BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023812
(277 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 18/188 (9%)
Query: 13 VAGLIAGVATVIVGHPFDTVKVKLQKHNTEVHGIRYKNGLHCTARILRTEGVRGLYRGAT 72
+AG G V V P D VKV+ Q G RY++ + I R EG+RGL++G +
Sbjct: 109 LAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTS 168
Query: 73 PSFLGMAFESSLLFGIYSQTKQ-LLQGGVQSGGPQPNVIIP---SAAFGGSIISFVLC-P 127
P+ A + Y K LL+ + + +P ++AFG + V+ P
Sbjct: 169 PNVARNAIVNCAELVTYDLIKDTLLKANLMTDD------LPCHFTSAFGAGFCTTVIASP 222
Query: 128 SELVKCRMQVQGTDSLVPKSVRYTSPLDCALRTVKQEGVMAIFRGGSTTFLREAIGNAVF 187
++VK R +Y S CAL +++EG A ++G +FLR N V
Sbjct: 223 VDVVKTRYMNSALG-------QYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVM 275
Query: 188 FSVYEHVR 195
F YE ++
Sbjct: 276 FVTYEQLK 283
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 14/189 (7%)
Query: 14 AGLIAGVATVIVGHPFDTVKVKLQKHNTEVHGI-------RYKNGLHCTARILRTEGVRG 66
AG A +A +I P DT KV+LQ E G+ +Y+ L ++RTEG R
Sbjct: 8 AGTAACIADLIT-FPLDTAKVRLQIQG-ESQGLVRTAASAQYRGVLGTILTMVRTEGPRS 65
Query: 67 LYRGATPSFLGMAFESSLLFGIYSQTKQLLQGGVQSGGPQPNVIIPSAAFGGSIISFVLC 126
LY G +S+ G+Y KQ G + G ++ S G++ V
Sbjct: 66 LYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTT--GALAVAVAQ 123
Query: 127 PSELVKCRMQVQGTDSLVPKSVRYTSPLDCALRTVKQEGVMAIFRGGSTTFLREAIGNAV 186
P+++VK R Q Q + RY S ++ ++EG+ +++G S R AI N
Sbjct: 124 PTDVVKVRFQAQ---ARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCA 180
Query: 187 FFSVYEHVR 195
Y+ ++
Sbjct: 181 ELVTYDLIK 189
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 18 AGVATVIVGHPFDTVKVKLQKHNTEVHGIRYKNGLHCTARILRTEGVRGLYRGATPSFLG 77
AG T ++ P D VK + N+ + +Y + HC +LR EG R Y+G PSFL
Sbjct: 212 AGFCTTVIASPVDVVKTRYM--NSALG--QYHSAGHCALTMLRKEGPRAFYKGFMPSFLR 267
Query: 78 MAFESSLLFGIYSQTKQLLQGGVQS 102
+ + ++F Y Q K+ L QS
Sbjct: 268 LGSWNVVMFVTYEQLKRALMAAYQS 292
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 90/195 (46%), Gaps = 25/195 (12%)
Query: 14 AGLIAGVATVIVGHPFDTVKVKLQKHNTEVHGIRYKNGL-HCTARILRTEGVRGLYRGAT 72
+G AG ++ +P D + +L + R GL +C +I +++G+RGLY+G
Sbjct: 118 SGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFN 177
Query: 73 PSFLGMAFESSLLFGIYSQTKQLLQGGVQSGGPQP-NV-IIPSAAFGGSIIS---FVLCP 127
S G+ + FG+Y K +L P P NV II S ++ + V P
Sbjct: 178 VSVQGIIIYRAAYFGVYDTAKGML--------PDPKNVHIIVSWMIAQTVTAVAGLVSYP 229
Query: 128 SELVKCRMQVQ----GTDSLVPKSVRYTSPLDCALRTVKQEGVMAIFRGGSTTFLREAIG 183
+ V+ RM +Q G D + YT +DC + K EG A F+G + LR +G
Sbjct: 230 FDTVRRRMMMQSGRKGAD------IMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR-GMG 282
Query: 184 NAVFFSVYEHVRYYM 198
A +Y+ ++ ++
Sbjct: 283 GAFVLVLYDEIKKFV 297
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 79/192 (41%), Gaps = 8/192 (4%)
Query: 10 KEYVAGLIAGVATVIVGHPFDTVKVKLQKHNTEVH---GIRYKNGLHCTARILRTEGVRG 66
K+++AG +A + P + VK+ LQ + +YK + C RI + +G
Sbjct: 9 KDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLS 68
Query: 67 LYRGATPSFLGMAFESSLLFGIYSQTKQLLQGGVQSGGPQPNVIIPSAAFGGSIISFVLC 126
+RG + + +L F + KQ+ GGV + A GG+ + LC
Sbjct: 69 FWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLC 128
Query: 127 ---PSELVKCRMQVQGTDSLVPKSVRYTSPLDCALRTVKQEGVMAIFRGGSTTFLREAIG 183
P + + R+ + +T +C + K +G+ +++G + + I
Sbjct: 129 FVYPLDFARTRLAADVGKGAAQRE--FTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIY 186
Query: 184 NAVFFSVYEHVR 195
A +F VY+ +
Sbjct: 187 RAAYFGVYDTAK 198
>pdb|1CPT|A Chain A, Crystal Structure And Refinement Of Cytochrome P450-Terp
At 2.3 Angstroms Resolution
Length = 428
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 113 SAAFGGSIISFVLCPSELVKCRMQVQGTDSLVPKSVRYTSPLDCALRTV 161
S++ GG+II P +L + LV ++VR+T+P+ +RT
Sbjct: 273 SSSSGGAIIGLSRNPEQLALAKSDPALIPRLVDEAVRWTAPVKSFMRTA 321
>pdb|2BOV|B Chain B, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 251
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 3 ESWGSG-YKEYVAGLIAGVATVIVGHPFDTVKV--KLQKHNTEVHG-----IRYKNGLHC 54
++WG+ YK+Y GL IV + ++ KL+++ ++G I+ L
Sbjct: 56 KAWGNAQYKKY--GLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDK 113
Query: 55 TARILRTEGVRGLYRGATPSFLGMAFESSLL 85
+ ++T L+RG P++LG F+++LL
Sbjct: 114 SFNKMKTPENIMLFRGDDPAYLGTEFQNTLL 144
>pdb|1GZE|A Chain A, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
pdb|1GZE|B Chain B, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
pdb|1GZE|C Chain C, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
pdb|1GZE|D Chain D, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
Length = 211
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 3 ESWGSG-YKEYVAGLIAGVATVIVGHPFDTVKV--KLQKHNTEVHG-----IRYKNGLHC 54
++WG+ YK+Y GL IV + ++ KL+++ ++G I+ L
Sbjct: 16 KAWGNAQYKKY--GLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDK 73
Query: 55 TARILRTEGVRGLYRGATPSFLGMAFESSLL 85
+ ++T L+RG P++LG F+++LL
Sbjct: 74 SFNKMKTPENIMLFRGDDPAYLGTEFQNTLL 104
>pdb|2C8B|X Chain X, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
( Free State, Crystal Form Ii)
pdb|2C8C|A Chain A, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form I)
pdb|2C8C|B Chain B, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form I)
pdb|2C8C|C Chain C, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form I)
pdb|2C8C|D Chain D, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form I)
pdb|2C8D|A Chain A, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8D|B Chain B, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8D|C Chain C, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8D|D Chain D, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
Length = 211
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 3 ESWGSG-YKEYVAGLIAGVATVIVGHPFDTVKV--KLQKHNTEVHG-----IRYKNGLHC 54
++WG+ YK+Y GL IV + ++ KL+++ ++G I+ L
Sbjct: 16 KAWGNAQYKKY--GLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDK 73
Query: 55 TARILRTEGVRGLYRGATPSFLGMAFESSLL 85
+ ++T L+RG P++LG F+++LL
Sbjct: 74 SFNKMKTPENIMLFRGDDPAYLGTEFQNTLL 104
>pdb|2C8G|A Chain A, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8G|B Chain B, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8G|C Chain C, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8G|D Chain D, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8H|A Chain A, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Nad- Bound State, Crystal Form I)
pdb|2C8H|B Chain B, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Nad- Bound State, Crystal Form I)
pdb|2C8H|C Chain C, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Nad- Bound State, Crystal Form I)
pdb|2C8H|D Chain D, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Nad- Bound State, Crystal Form I)
Length = 211
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 3 ESWGSG-YKEYVAGLIAGVATVIVGHPFDTVKV--KLQKHNTEVHG-----IRYKNGLHC 54
++WG+ YK+Y GL IV + ++ KL+++ ++G I+ L
Sbjct: 16 KAWGNAQYKKY--GLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDK 73
Query: 55 TARILRTEGVRGLYRGATPSFLGMAFESSLL 85
+ ++T L+RG P++LG F+++LL
Sbjct: 74 SFNKMKTPENIMLFRGDDPAYLGTEFQNTLL 104
>pdb|2C8E|E Chain E, Structure Of The Artt Motif E214n Mutant C3bot1 Exoenzyme
(Free State, Crystal Form Iii)
pdb|2C8E|F Chain F, Structure Of The Artt Motif E214n Mutant C3bot1 Exoenzyme
(Free State, Crystal Form Iii)
pdb|2C8E|G Chain G, Structure Of The Artt Motif E214n Mutant C3bot1 Exoenzyme
(Free State, Crystal Form Iii)
pdb|2C8F|E Chain E, Structure Of The Artt Motif E214n Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form Iii)
pdb|2C8F|F Chain F, Structure Of The Artt Motif E214n Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form Iii)
pdb|2C8F|G Chain G, Structure Of The Artt Motif E214n Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form Iii)
Length = 211
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 3 ESWGSG-YKEYVAGLIAGVATVIVGHPFDTVKV--KLQKHNTEVHG-----IRYKNGLHC 54
++WG+ YK+Y GL IV + ++ KL+++ ++G I+ L
Sbjct: 16 KAWGNAQYKKY--GLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDK 73
Query: 55 TARILRTEGVRGLYRGATPSFLGMAFESSLL 85
+ ++T L+RG P++LG F+++LL
Sbjct: 74 SFNKMKTPENIMLFRGDDPAYLGTEFQNTLL 104
>pdb|2A78|B Chain B, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|B Chain B, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 223
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 3 ESWGSG-YKEYVAGLIAGVATVIVGHPFDTVKV--KLQKHNTEVHG-----IRYKNGLHC 54
++WG+ YK+Y GL IV + ++ KL+++ ++G I+ L
Sbjct: 28 KAWGNAQYKKY--GLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDK 85
Query: 55 TARILRTEGVRGLYRGATPSFLGMAFESSLL 85
+ ++T L+RG P++LG F+++LL
Sbjct: 86 SFNKMKTPENIMLFRGDDPAYLGTEFQNTLL 116
>pdb|1G24|A Chain A, The Crystal Structure Of Exoenzyme C3 From Clostridium
Botulinum
pdb|1G24|B Chain B, The Crystal Structure Of Exoenzyme C3 From Clostridium
Botulinum
pdb|1G24|C Chain C, The Crystal Structure Of Exoenzyme C3 From Clostridium
Botulinum
pdb|1G24|D Chain D, The Crystal Structure Of Exoenzyme C3 From Clostridium
Botulinum
pdb|1GZF|A Chain A, Structure Of The Clostridium Botulinum C3 Exoenzyme (Wild-
Type) In Complex With Nad
pdb|1GZF|B Chain B, Structure Of The Clostridium Botulinum C3 Exoenzyme (Wild-
Type) In Complex With Nad
pdb|1GZF|C Chain C, Structure Of The Clostridium Botulinum C3 Exoenzyme (Wild-
Type) In Complex With Nad
pdb|1GZF|D Chain D, Structure Of The Clostridium Botulinum C3 Exoenzyme (Wild-
Type) In Complex With Nad
pdb|1UZI|A Chain A, C3 Exoenzyme From Clostridium Botulinum, Tetragonal Form
pdb|1UZI|B Chain B, C3 Exoenzyme From Clostridium Botulinum, Tetragonal Form
pdb|2C89|A Chain A, Structure Of The Wild-Type C3bot1 Exoenzyme (Free State,
Crystal Form I)
pdb|2C89|B Chain B, Structure Of The Wild-Type C3bot1 Exoenzyme (Free State,
Crystal Form I)
pdb|2C89|C Chain C, Structure Of The Wild-Type C3bot1 Exoenzyme (Free State,
Crystal Form I)
pdb|2C89|D Chain D, Structure Of The Wild-Type C3bot1 Exoenzyme (Free State,
Crystal Form I)
pdb|2C8A|A Chain A, Structure Of The Wild-Type C3bot1 Exoenzyme (Nicotinamide-
Bound State, Crystal Form I)
pdb|2C8A|B Chain B, Structure Of The Wild-Type C3bot1 Exoenzyme (Nicotinamide-
Bound State, Crystal Form I)
pdb|2C8A|C Chain C, Structure Of The Wild-Type C3bot1 Exoenzyme (Nicotinamide-
Bound State, Crystal Form I)
pdb|2C8A|D Chain D, Structure Of The Wild-Type C3bot1 Exoenzyme (Nicotinamide-
Bound State, Crystal Form I)
Length = 211
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 3 ESWGSG-YKEYVAGLIAGVATVIVGHPFDTVKV--KLQKHNTEVHG-----IRYKNGLHC 54
++WG+ YK+Y GL IV + ++ KL+++ ++G I+ L
Sbjct: 16 KAWGNAQYKKY--GLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDK 73
Query: 55 TARILRTEGVRGLYRGATPSFLGMAFESSLL 85
+ ++T L+RG P++LG F+++LL
Sbjct: 74 SFNKMKTPENIMLFRGDDPAYLGTEFQNTLL 104
>pdb|2B3M|A Chain A, Crystal Structure Of Protein Af1124 From Archaeoglobus
Fulgidus
pdb|3K67|A Chain A, Crystal Structure Of Protein Af1124 From Archaeoglobus
Fulgidus
pdb|3K67|B Chain B, Crystal Structure Of Protein Af1124 From Archaeoglobus
Fulgidus
Length = 159
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 116 FGGSIISFVLCPSELVKCRMQVQGTDSLVPKSVRYTSPLDCALRTVKQEGVMA 168
FGG ++ +L S + ++ GT L+ +S RYTSP+ V+ EGV++
Sbjct: 78 FGGRVVHGMLTTSLVSAAVARLPGTVVLLEQSFRYTSPVRIG-DVVRVEGVVS 129
>pdb|4DQN|A Chain A, Crystal Structure Of The Branched-Chain Aminotransferase
From Streptococcus Mutans
Length = 345
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 5 WGSGYKEYVAGLIAGVATVIVGHPFDTVKVKLQKHNTEVHGIRYKNGLHCTARILRTEGV 64
+G+G Y+ L+ GV VI HP D + G +K GL T +++ +
Sbjct: 121 YGTGATLYLRPLLIGVGDVIGVHPADEYIFTIFAMPV---GNYFKGGLAPTNFLIQDDYD 177
Query: 65 RGLYRGATPSFLGMAFESSLLFGIYSQTKQL 95
R G + +G + +SLL G + +Q
Sbjct: 178 RAAPHGTGAAKVGGNYAASLLPGKVAHERQF 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,192,858
Number of Sequences: 62578
Number of extensions: 260668
Number of successful extensions: 592
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 579
Number of HSP's gapped (non-prelim): 16
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)