Query 023812
Match_columns 277
No_of_seqs 170 out of 1773
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 13:12:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 4E-41 1.4E-45 297.2 23.4 226 3-239 2-233 (297)
2 2lck_A Mitochondrial uncouplin 100.0 1.3E-40 4.4E-45 294.9 22.2 218 10-239 3-226 (303)
3 2lck_A Mitochondrial uncouplin 100.0 3.8E-38 1.3E-42 279.0 15.8 189 6-202 102-290 (303)
4 1okc_A ADP, ATP carrier protei 100.0 3.1E-36 1E-40 266.0 17.8 184 8-197 112-296 (297)
5 3tgu_G UQCRQ, mitochondrial ub 51.4 22 0.00074 24.1 4.2 41 164-204 32-72 (81)
6 1q90_R Cytochrome B6-F complex 49.8 30 0.001 21.0 4.3 28 214-241 12-39 (49)
7 1pp9_G Ubiquinol-cytochrome C 43.7 44 0.0015 22.5 4.9 42 164-205 32-73 (81)
8 1jdm_A Sarcolipin; helix, memb 32.4 36 0.0012 18.1 2.2 19 242-260 8-26 (31)
9 2jr3_A Pelovaterin; beta-defen 24.2 16 0.00055 20.3 0.0 11 259-269 29-40 (42)
10 1fjk_A Cardiac phospholamban; 21.2 1.1E+02 0.0039 17.9 3.3 9 245-253 34-42 (52)
11 4adi_A E1 envelope glycoprotei 20.6 21 0.00072 29.6 0.0 10 124-133 148-157 (473)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=4e-41 Score=297.24 Aligned_cols=226 Identities=17% Similarity=0.265 Sum_probs=191.0
Q ss_pred CCccchHHHHHHHHHHHHhhHhhcccHhHHHHHHhcCCCCC---CCcccCCHHHHHHHHHHhhchhhcccCcchhHHHHH
Q 023812 3 ESWGSGYKEYVAGLIAGVATVIVGHPFDTVKVKLQKHNTEV---HGIRYKNGLHCTARILRTEGVRGLYRGATPSFLGMA 79 (277)
Q Consensus 3 ~~~~~~~~~~~aG~~ag~~~~~i~~Pld~ik~rlq~~~~~~---~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~ 79 (277)
|+..+.++++++|++||+++.+++||+|++|+|+|++.... ...+|++.++++++++++||++|||||+.+++++.+
T Consensus 2 ~~~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~ 81 (297)
T 1okc_A 2 DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYF 81 (297)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHH
Confidence 45567889999999999999999999999999999986421 234689999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHhCCCCCCC---CCchhHHHHHHHHHHHHHhhhccHHHHHHHHHhccCCCCCCCCCCCCCHHHH
Q 023812 80 FESSLLFGIYSQTKQLLQGGVQSGG---PQPNVIIPSAAFGGSIISFVLCPSELVKCRMQVQGTDSLVPKSVRYTSPLDC 156 (277)
Q Consensus 80 ~~~~~~f~~~~~~k~~l~~~~~~~~---~~~~~~~~ag~~Ag~~~~~v~~P~eviktrlq~~~~~~~~~~~~~y~~~~~~ 156 (277)
+..+++|.+||.+|+.+.+..+... ......+++|++||+++.++++|+|+||+|+|++.... +...+|++.+++
T Consensus 82 ~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~--~~~~~~~~~~~~ 159 (297)
T 1okc_A 82 PTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG--AAQREFTGLGNC 159 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS--TTTCSCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC--CcCcCCCCHHHH
Confidence 9999999999999996543222111 12345688999999999999999999999999985321 134579999999
Q ss_pred HHHHHHhhhhhhcchhhHHhHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 023812 157 ALRTVKQEGVMAIFRGGSTTFLREAIGNAVFFSVYEHVRYYMHLKLKAASSDHSNLIDMGIGIVSGGLGGVAVSILTALH 236 (277)
Q Consensus 157 ~~~i~~~eGi~glyrG~~~~~lr~~p~~~i~f~~ye~lk~~~~~~~~~~~~~~~~~~~~~~~~~sg~~ag~~a~~~t~P~ 236 (277)
+++|+++||++|||||+.++++|++|+++++|.+||.+|+.+.+.. + .+....+++|++||++++++++|.
T Consensus 160 ~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~-----~----~~~~~~~~~g~~ag~~a~~~t~P~ 230 (297)
T 1okc_A 160 ITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK-----N----VHIIVSWMIAQTVTAVAGLVSYPF 230 (297)
T ss_dssp HHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG-----C----SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC-----C----ccHHHHHHHHHHHHHHHHHhcChH
Confidence 9999999999999999999999999999999999999998654321 1 245567899999999999999997
Q ss_pred HHH
Q 023812 237 FYF 239 (277)
Q Consensus 237 ~~~ 239 (277)
--+
T Consensus 231 dvv 233 (297)
T 1okc_A 231 DTV 233 (297)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.3e-40 Score=294.93 Aligned_cols=218 Identities=22% Similarity=0.310 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHhhHhhcccHhHHHHHHhcCCCCC------CCcccCCHHHHHHHHHHhhchhhcccCcchhHHHHHHhhh
Q 023812 10 KEYVAGLIAGVATVIVGHPFDTVKVKLQKHNTEV------HGIRYKNGLHCTARILRTEGVRGLYRGATPSFLGMAFESS 83 (277)
Q Consensus 10 ~~~~aG~~ag~~~~~i~~Pld~ik~rlq~~~~~~------~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~ 83 (277)
.++++|++||+++.+++||+|++|+|+|++.... ...+|++.++++++++++||++|||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 3689999999999999999999999999986532 1346899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCchhHHHHHHHHHHHHHhhhccHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHh
Q 023812 84 LLFGIYSQTKQLLQGGVQSGGPQPNVIIPSAAFGGSIISFVLCPSELVKCRMQVQGTDSLVPKSVRYTSPLDCALRTVKQ 163 (277)
Q Consensus 84 ~~f~~~~~~k~~l~~~~~~~~~~~~~~~~ag~~Ag~~~~~v~~P~eviktrlq~~~~~~~~~~~~~y~~~~~~~~~i~~~ 163 (277)
++|.+||.+|+.+.+..+ ..+....+++|++||+++.++++|+|+||+|+|++... +...+|++.++++++|+++
T Consensus 83 i~f~~ye~~k~~~~~~~~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~---~~~~~~~~~~~~~~~i~~~ 157 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSE--HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA---GGGRRYQSTVEAYKTIARE 157 (303)
T ss_dssp HTTTHHHHHHHHHSCCCS--SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC---CCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCc--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc---CCCCCCCCHHHHHHHHHHh
Confidence 999999999999875422 35667788999999999999999999999999998643 1345799999999999999
Q ss_pred hhhhhcchhhHHhHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023812 164 EGVMAIFRGGSTTFLREAIGNAVFFSVYEHVRYYMHLKLKAASSDHSNLIDMGIGIVSGGLGGVAVSILTALHFYF 239 (277)
Q Consensus 164 eGi~glyrG~~~~~lr~~p~~~i~f~~ye~lk~~~~~~~~~~~~~~~~~~~~~~~~~sg~~ag~~a~~~t~P~~~~ 239 (277)
||++|||||+.++++|++|+.+++|.+||.+|+.+.+.... ..+....+++|++||++++++++|.--+
T Consensus 158 eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~-------~~~~~~~~~~g~~ag~~~~~~~~P~dvv 226 (303)
T 2lck_A 158 EGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLM-------TDDLPCHFTSAFGAGFCTTVIASPVDVV 226 (303)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSC-------CSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-------CCchHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 99999999999999999999999999999999887643211 1244578999999999999999996543
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.8e-38 Score=279.00 Aligned_cols=189 Identities=27% Similarity=0.373 Sum_probs=170.0
Q ss_pred cchHHHHHHHHHHHHhhHhhcccHhHHHHHHhcCCCCCCCcccCCHHHHHHHHHHhhchhhcccCcchhHHHHHHhhhHH
Q 023812 6 GSGYKEYVAGLIAGVATVIVGHPFDTVKVKLQKHNTEVHGIRYKNGLHCTARILRTEGVRGLYRGATPSFLGMAFESSLL 85 (277)
Q Consensus 6 ~~~~~~~~aG~~ag~~~~~i~~Pld~ik~rlq~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~~~ 85 (277)
.+.+..+++|++||+++.++++|+|++|+|+|++.......+|++.++++++++++||++|||||+.+++++.++..+++
T Consensus 102 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~ 181 (303)
T 2lck_A 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAE 181 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999987543445789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCchhHHHHHHHHHHHHHhhhccHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHhhh
Q 023812 86 FGIYSQTKQLLQGGVQSGGPQPNVIIPSAAFGGSIISFVLCPSELVKCRMQVQGTDSLVPKSVRYTSPLDCALRTVKQEG 165 (277)
Q Consensus 86 f~~~~~~k~~l~~~~~~~~~~~~~~~~ag~~Ag~~~~~v~~P~eviktrlq~~~~~~~~~~~~~y~~~~~~~~~i~~~eG 165 (277)
|.+||.+|+.+.+... ........+++|++||++++++++|+|+||+|+|.+.. .+|+++++++++|+++||
T Consensus 182 f~~ye~~k~~l~~~~~-~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~-------~~y~~~~~~~~~i~~~eG 253 (303)
T 2lck_A 182 LVTYDLIKDTLLKANL-MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL-------GQYHSAGHCALTMLRKEG 253 (303)
T ss_dssp HHHHHHHHHTTTTTTS-CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS-------SSCCSHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhccC-CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc-------cccCCHHHHHHHHHHHcC
Confidence 9999999998865432 23455677899999999999999999999999999753 359999999999999999
Q ss_pred hhhcchhhHHhHHHHHhhhHHHHHHHHHHHHHHHhhc
Q 023812 166 VMAIFRGGSTTFLREAIGNAVFFSVYEHVRYYMHLKL 202 (277)
Q Consensus 166 i~glyrG~~~~~lr~~p~~~i~f~~ye~lk~~~~~~~ 202 (277)
++|||||+.++++|.+|..+++|.+||.+|+.+.+..
T Consensus 254 ~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~ 290 (303)
T 2lck_A 254 PRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAY 290 (303)
T ss_dssp THHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred hHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998776543
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.1e-36 Score=265.96 Aligned_cols=184 Identities=24% Similarity=0.415 Sum_probs=159.7
Q ss_pred hHHHHHHHHHHHHhhHhhcccHhHHHHHHhcCCCC-CCCcccCCHHHHHHHHHHhhchhhcccCcchhHHHHHHhhhHHH
Q 023812 8 GYKEYVAGLIAGVATVIVGHPFDTVKVKLQKHNTE-VHGIRYKNGLHCTARILRTEGVRGLYRGATPSFLGMAFESSLLF 86 (277)
Q Consensus 8 ~~~~~~aG~~ag~~~~~i~~Pld~ik~rlq~~~~~-~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~~~f 86 (277)
.+..+++|++||+++.++++|+|++|+|+|++... ....+|++.++++++++++||++|||||+.+++++.++..+++|
T Consensus 112 ~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f 191 (297)
T 1okc_A 112 FAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYF 191 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999998642 22457899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCchhHHHHHHHHHHHHHhhhccHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHhhhh
Q 023812 87 GIYSQTKQLLQGGVQSGGPQPNVIIPSAAFGGSIISFVLCPSELVKCRMQVQGTDSLVPKSVRYTSPLDCALRTVKQEGV 166 (277)
Q Consensus 87 ~~~~~~k~~l~~~~~~~~~~~~~~~~ag~~Ag~~~~~v~~P~eviktrlq~~~~~~~~~~~~~y~~~~~~~~~i~~~eGi 166 (277)
.+||.+|+.+.+. ...+....+++|++||++++++++|+|+||+|+|++.... +....|+++++++++|+++||+
T Consensus 192 ~~ye~~k~~~~~~---~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~--~~~~~y~~~~~~~~~i~~~eG~ 266 (297)
T 1okc_A 192 GVYDTAKGMLPDP---KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRK--GADIMYTGTVDCWRKIAKDEGP 266 (297)
T ss_dssp HHHHHHHHSSCGG---GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC--GGGCSCSSHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHhccC---CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCC--CCCCCCCCHHHHHHHHHHHcCc
Confidence 9999999976543 2345566788999999999999999999999999875321 1345799999999999999999
Q ss_pred hhcchhhHHhHHHHHhhhHHHHHHHHHHHHH
Q 023812 167 MAIFRGGSTTFLREAIGNAVFFSVYEHVRYY 197 (277)
Q Consensus 167 ~glyrG~~~~~lr~~p~~~i~f~~ye~lk~~ 197 (277)
+|||||+.++++|. +..+++|.+||.+|+.
T Consensus 267 ~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~ 296 (297)
T 1okc_A 267 KAFFKGAWSNVLRG-MGGAFVLVLYDEIKKF 296 (297)
T ss_dssp GGGGTTHHHHHHHH-HHHHHHHHHHHTC---
T ss_pred CeEecchHHHHHhh-ccceeeehHHHHHHhh
Confidence 99999999999996 5679999999999865
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=51.40 E-value=22 Score=24.11 Aligned_cols=41 Identities=10% Similarity=0.038 Sum_probs=31.0
Q ss_pred hhhhhcchhhHHhHHHHHhhhHHHHHHHHHHHHHHHhhccc
Q 023812 164 EGVMAIFRGGSTTFLREAIGNAVFFSVYEHVRYYMHLKLKA 204 (277)
Q Consensus 164 eGi~glyrG~~~~~lr~~p~~~i~f~~ye~lk~~~~~~~~~ 204 (277)
.|+...+|-+...++..+|..++.+.+|++.++.-.....+
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rK 72 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRK 72 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45555566677788888999999999999998877655433
No 6
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=49.82 E-value=30 Score=20.96 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023812 214 DMGIGIVSGGLGGVAVSILTALHFYFFL 241 (277)
Q Consensus 214 ~~~~~~~sg~~ag~~a~~~t~P~~~~~~ 241 (277)
....+.+..+..+..+..+.+|.+.+|+
T Consensus 12 Rqfln~l~~G~~a~~a~~~~~P~v~ffv 39 (49)
T 1q90_R 12 RNIMNLILAGGAGLPITTLALGYGAFFV 39 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhheeec
Confidence 3445667777788888999999999884
No 7
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=43.74 E-value=44 Score=22.53 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=32.4
Q ss_pred hhhhhcchhhHHhHHHHHhhhHHHHHHHHHHHHHHHhhcccC
Q 023812 164 EGVMAIFRGGSTTFLREAIGNAVFFSVYEHVRYYMHLKLKAA 205 (277)
Q Consensus 164 eGi~glyrG~~~~~lr~~p~~~i~f~~ye~lk~~~~~~~~~~ 205 (277)
.|+...+|-+...++..+|..++.+.+|+..++.-.....++
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rKn 73 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKN 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCCC
Confidence 566667777777888889998999999999998776554433
No 8
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=32.35 E-value=36 Score=18.05 Aligned_cols=19 Identities=32% Similarity=0.663 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023812 242 LCFSFTLILFYLLCFLVLV 260 (277)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~ 260 (277)
||.-||++|.-++..-.+|
T Consensus 8 Lf~NFt~vLI~vlLi~llV 26 (31)
T 1jdm_A 8 LFLNFTIVLITVILMWLLV 26 (31)
T ss_dssp SHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455676666555444444
No 9
>2jr3_A Pelovaterin; beta-defensin like peptide, chinese SOFT-shelled turtle eggshell, antibacterial peptide, eggshell matrix; NMR {Pelodiscus sinensis}
Probab=24.24 E-value=16 Score=20.34 Aligned_cols=11 Identities=64% Similarity=1.645 Sum_probs=7.4
Q ss_pred HHhcC-cccccc
Q 023812 259 LVSCS-TFGCCK 269 (277)
Q Consensus 259 ~~~~~-~~~~~~ 269 (277)
-|.|| .||||.
T Consensus 29 tvgcsggfgccr 40 (42)
T 2jr3_A 29 TVGCSGGFGCCR 40 (42)
T ss_dssp CSSSCTTEEBCB
T ss_pred EeeccCCcceee
Confidence 45676 478885
No 10
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=21.24 E-value=1.1e+02 Score=17.92 Aligned_cols=9 Identities=56% Similarity=1.091 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 023812 245 SFTLILFYL 253 (277)
Q Consensus 245 ~~~~~~~~~ 253 (277)
-|+|||..|
T Consensus 34 nfclilicl 42 (52)
T 1fjk_A 34 NFCLILIFL 42 (52)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 11
>4adi_A E1 envelope glycoprotein; viral protein, membrane fusion; HET: NAG NGA; 1.80A {Rubella virus} PDB: 4adg_A* 4adj_A* 4b3v_A*
Probab=20.60 E-value=21 Score=29.65 Aligned_cols=10 Identities=30% Similarity=0.464 Sum_probs=4.1
Q ss_pred hhccHHHHHH
Q 023812 124 VLCPSELVKC 133 (277)
Q Consensus 124 v~~P~evikt 133 (277)
+-+|-.++|.
T Consensus 148 vqhphktvrv 157 (473)
T 4adi_A 148 VQHPHKTVRV 157 (473)
T ss_dssp CCCGGGCEEE
T ss_pred hhCCCceEEE
Confidence 3344444433
Done!