Query 023812
Match_columns 277
No_of_seqs 170 out of 1773
Neff 8.7
Searched_HMMs 13730
Date Mon Mar 25 13:12:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023812.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023812hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1okca_ f.42.1.1 (A:) ADP,ATP 100.0 1.1E-36 8E-41 265.4 23.0 225 3-238 1-231 (292)
2 d1okca_ f.42.1.1 (A:) ADP,ATP 100.0 3.7E-32 2.7E-36 236.5 17.4 182 7-194 110-292 (292)
3 d1ppjg_ f.23.13.1 (G:) Ubiquin 54.9 10 0.00076 23.7 4.6 39 164-202 32-70 (75)
4 d3cx5h1 f.23.13.1 (H:2-94) Ubi 19.0 70 0.0051 20.5 4.0 35 163-197 41-75 (93)
5 d1mmca_ g.3.1.2 (A:) Antimicro 17.7 5.1 0.00037 19.5 -1.5 10 262-271 15-24 (30)
6 d1uptb_ a.193.1.1 (B:) Golgi a 15.0 77 0.0056 18.3 3.1 32 191-236 5-36 (58)
7 d2cr8a1 g.41.11.1 (A:8-48) MDM 14.3 34 0.0024 18.4 1.2 9 269-277 29-37 (41)
8 d1yroa1 d.2.1.2 (A:1-123) alph 11.1 73 0.0053 21.5 2.6 23 153-176 88-110 (123)
9 d2hwna1 a.31.1.1 (A:5-43) cAMP 10.6 1.2E+02 0.0084 16.0 2.8 26 165-190 4-29 (39)
10 d1y9ia_ a.195.1.1 (A:) Low tem 9.1 1.9E+02 0.014 20.2 4.4 47 184-232 108-154 (159)
No 1
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]}
Probab=100.00 E-value=1.1e-36 Score=265.38 Aligned_cols=225 Identities=17% Similarity=0.266 Sum_probs=193.2
Q ss_pred CCccchHHHHHHHHHHHHhhHhhcccHhHHHHHHhcCCCC---CCCcccCCHHHHHHHHHHhhchhhcccCcchhHHHHH
Q 023812 3 ESWGSGYKEYVAGLIAGVATVIVGHPFDTVKVKLQKHNTE---VHGIRYKNGLHCTARILRTEGVRGLYRGATPSFLGMA 79 (277)
Q Consensus 3 ~~~~~~~~~~~aG~~ag~~~~~i~~Pld~ik~rlq~~~~~---~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~ 79 (277)
|+..+..+++++|++|++++.+++||||+||+|+|+++.. .....+++.++.+++++++||+++||||+.+.+++..
T Consensus 1 ~~~~~~~~~~laG~~a~~i~~~~~~Pld~iK~r~Q~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~l~~~~ 80 (292)
T d1okca_ 1 DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYF 80 (292)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCCCcccccCCHHHHHHHHHHhhhhhhhhhccchhhhhhh
Confidence 4556788999999999999999999999999999998643 2345689999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHhCCCCCCCC---CchhHHHHHHHHHHHHHhhhccHHHHHHHHHhccCCCCCCCCCCCCCHHHH
Q 023812 80 FESSLLFGIYSQTKQLLQGGVQSGGP---QPNVIIPSAAFGGSIISFVLCPSELVKCRMQVQGTDSLVPKSVRYTSPLDC 156 (277)
Q Consensus 80 ~~~~~~f~~~~~~k~~l~~~~~~~~~---~~~~~~~ag~~Ag~~~~~v~~P~eviktrlq~~~~~~~~~~~~~y~~~~~~ 156 (277)
+...++|..||.+++.+.+....... .....+.+|.+||+++.++++|+|++|+|+|.+.... ...+.|.+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~P~~~ik~r~~~~~~~~--~~~~~~~~~~~~ 158 (292)
T d1okca_ 81 PTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG--AAQREFTGLGNC 158 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS--TTTCSCSSHHHH
T ss_pred cccchhHHHHHHHHHHHhcccccccccchhhhhhhhhhhhhhhhHHhhhhhhhhhheeeecccccc--ccccccccHHHH
Confidence 99999999999999998865433222 2334577899999999999999999999999987542 245578999999
Q ss_pred HHHHHHhhhhhhcchhhHHhHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 023812 157 ALRTVKQEGVMAIFRGGSTTFLREAIGNAVFFSVYEHVRYYMHLKLKAASSDHSNLIDMGIGIVSGGLGGVAVSILTALH 236 (277)
Q Consensus 157 ~~~i~~~eGi~glyrG~~~~~lr~~p~~~i~f~~ye~lk~~~~~~~~~~~~~~~~~~~~~~~~~sg~~ag~~a~~~t~P~ 236 (277)
+++++++||+++||+|+.++++|++|+++++|..||.+|+.+.+... ......+++|.+++.+++++|+|.
T Consensus 159 ~~~~~~~~G~~~l~~G~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~---------~~~~~~~~~~~~~~~~a~~~t~P~ 229 (292)
T d1okca_ 159 ITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKN---------VHIIVSWMIAQTVTAVAGLVSYPF 229 (292)
T ss_dssp HHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGC---------SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccchhhhhccccccccceehHhhhhhhhccchhhhcccccc---------cchHHHHHHHHHHHHHHhhccccH
Confidence 99999999999999999999999999999999999999976543211 245577899999999999999996
Q ss_pred HH
Q 023812 237 FY 238 (277)
Q Consensus 237 ~~ 238 (277)
.-
T Consensus 230 dv 231 (292)
T d1okca_ 230 DT 231 (292)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 2
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]}
Probab=99.98 E-value=3.7e-32 Score=236.48 Aligned_cols=182 Identities=24% Similarity=0.379 Sum_probs=159.9
Q ss_pred chHHHHHHHHHHHHhhHhhcccHhHHHHHHhcCCCC-CCCcccCCHHHHHHHHHHhhchhhcccCcchhHHHHHHhhhHH
Q 023812 7 SGYKEYVAGLIAGVATVIVGHPFDTVKVKLQKHNTE-VHGIRYKNGLHCTARILRTEGVRGLYRGATPSFLGMAFESSLL 85 (277)
Q Consensus 7 ~~~~~~~aG~~ag~~~~~i~~Pld~ik~rlq~~~~~-~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~~~ 85 (277)
+...++++|++|++++..+.+|+|++|+|+|.+... ...+.+.+..+.+++++++||++++|+|+.+++++.++..+++
T Consensus 110 ~~~~~~~~~~~a~~~~~~~~~P~~~ik~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~G~~~~~~~~~~~~~~~ 189 (292)
T d1okca_ 110 YFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAY 189 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhHHhhhhhhhhhheeeeccccccccccccccHHHHHHHhhhccchhhhhccccccccceehHhhhh
Confidence 345678899999999999999999999999998753 2345688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCchhHHHHHHHHHHHHHhhhccHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHhhh
Q 023812 86 FGIYSQTKQLLQGGVQSGGPQPNVIIPSAAFGGSIISFVLCPSELVKCRMQVQGTDSLVPKSVRYTSPLDCALRTVKQEG 165 (277)
Q Consensus 86 f~~~~~~k~~l~~~~~~~~~~~~~~~~ag~~Ag~~~~~v~~P~eviktrlq~~~~~~~~~~~~~y~~~~~~~~~i~~~eG 165 (277)
|.+||.+|+.+.+. ........+.++.+++++++++++|+|+||+|+|.+.... ....+|+++++++++++++||
T Consensus 190 ~~~~~~~k~~~~~~---~~~~~~~~~~~~~~~~~~a~~~t~P~dvvktR~q~~~~~~--~~~~~y~~~~~~~~~i~~~eG 264 (292)
T d1okca_ 190 FGVYDTAKGMLPDP---KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRK--GADIMYTGTVDCWRKIAKDEG 264 (292)
T ss_dssp HHHHHHHHHSSCGG---GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC--GGGCSCSSHHHHHHHHHHHHC
T ss_pred hhhccchhhhcccc---cccchHHHHHHHHHHHHHHhhccccHHHHHHHHHhcCCCC--CCCCCCCCHHHHHHHHHHhcC
Confidence 99999999876543 3445667788999999999999999999999999986532 234579999999999999999
Q ss_pred hhhcchhhHHhHHHHHhhhHHHHHHHHHH
Q 023812 166 VMAIFRGGSTTFLREAIGNAVFFSVYEHV 194 (277)
Q Consensus 166 i~glyrG~~~~~lr~~p~~~i~f~~ye~l 194 (277)
++|||||+.++++|.+| +++.|.+||.+
T Consensus 265 ~~~lyrG~~~~~~r~i~-~~i~~~~ye~l 292 (292)
T d1okca_ 265 PKAFFKGAWSNVLRGMG-GAFVLVLYDEI 292 (292)
T ss_dssp GGGGGTTHHHHHHHHHH-HHHHHHHHHTC
T ss_pred cCcccccHHHHHHHHHH-HHhhhhHhhcC
Confidence 99999999999999776 58899999963
No 3
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=54.90 E-value=10 Score=23.69 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=31.4
Q ss_pred hhhhhcchhhHHhHHHHHhhhHHHHHHHHHHHHHHHhhc
Q 023812 164 EGVMAIFRGGSTTFLREAIGNAVFFSVYEHVRYYMHLKL 202 (277)
Q Consensus 164 eGi~glyrG~~~~~lr~~p~~~i~f~~ye~lk~~~~~~~ 202 (277)
.|+...+|-+...++..+|...+.+.+|++.++......
T Consensus 32 ~gi~N~~RR~~~~~l~v~PPfi~~Y~iy~W~~~~~~~~~ 70 (75)
T d1ppjg_ 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSK 70 (75)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHhHHhceEEcCHHHHHHHHHHHHHHHHHHHh
Confidence 566677777888889999999999999999987665443
No 4
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.98 E-value=70 Score=20.49 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=29.7
Q ss_pred hhhhhhcchhhHHhHHHHHhhhHHHHHHHHHHHHH
Q 023812 163 QEGVMAIFRGGSTTFLREAIGNAVFFSVYEHVRYY 197 (277)
Q Consensus 163 ~eGi~glyrG~~~~~lr~~p~~~i~f~~ye~lk~~ 197 (277)
+.|+...||-+...++..+|..++.+.+|+..++.
T Consensus 41 ~~~ifN~~RR~r~q~lyv~PPfi~~Y~iy~Wa~~~ 75 (93)
T d3cx5h1 41 HNAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEY 75 (93)
T ss_dssp TTTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccHHHHhhhhhceEEcchHHHHHHHHHHHHHH
Confidence 35777788888889999999999999999998764
No 5
>d1mmca_ g.3.1.2 (A:) Antimicrobial peptide 2, AC-AMP2 {Tassel (Amaranthus caudatus) [TaxId: 3567]}
Probab=17.68 E-value=5.1 Score=19.51 Aligned_cols=10 Identities=50% Similarity=1.218 Sum_probs=6.6
Q ss_pred cCccccccCC
Q 023812 262 CSTFGCCKNH 271 (277)
Q Consensus 262 ~~~~~~~~~~ 271 (277)
||.||-|...
T Consensus 15 csqfgycg~g 24 (30)
T d1mmca_ 15 CSQFGYCGKG 24 (30)
T ss_dssp ECTTSCEESS
T ss_pred hhhcCcccCC
Confidence 6777777544
No 6
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.02 E-value=77 Score=18.25 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 023812 191 YEHVRYYMHLKLKAASSDHSNLIDMGIGIVSGGLGGVAVSILTALH 236 (277)
Q Consensus 191 ye~lk~~~~~~~~~~~~~~~~~~~~~~~~~sg~~ag~~a~~~t~P~ 236 (277)
+|++|+.+.++....+ .-.+|-++++++-+|+
T Consensus 5 ~EYLRnvLfeYMmG~E--------------~~tlaKVi~av~kF~~ 36 (58)
T d1uptb_ 5 FEYLRKVLFEYMMGRE--------------TKTMAKVITTVLKFPD 36 (58)
T ss_dssp HHHHHHHHHHHHTTSS--------------HHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHcCcc--------------hhHHHHHHHHHHhCCH
Confidence 6889999888875432 2345556666655554
No 7
>d2cr8a1 g.41.11.1 (A:8-48) MDM4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.30 E-value=34 Score=18.39 Aligned_cols=9 Identities=56% Similarity=1.254 Sum_probs=6.0
Q ss_pred cCCCCCCCC
Q 023812 269 KNHYPDCSR 277 (277)
Q Consensus 269 ~~~~~~~~~ 277 (277)
||-||||+|
T Consensus 29 k~Wlpd~p~ 37 (41)
T d2cr8a1 29 KDWYSDCSK 37 (41)
T ss_dssp CCCCCCCCC
T ss_pred HhhcCCccc
Confidence 566777764
No 8
>d1yroa1 d.2.1.2 (A:1-123) alpha-Lactalbumin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.09 E-value=73 Score=21.52 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhhhhhcchhhHHh
Q 023812 153 PLDCALRTVKQEGVMAIFRGGSTT 176 (277)
Q Consensus 153 ~~~~~~~i~~~eGi~glyrG~~~~ 176 (277)
-..|+++|++++|+.+ |.++...
T Consensus 88 di~CAkkI~~~~G~~a-W~~w~~~ 110 (123)
T d1yroa1 88 DIACAKKILAIKGIDY-WKAYKPM 110 (123)
T ss_dssp HHHHHHHHHHHTCGGG-STTHHHH
T ss_pred HHHHHHHHHHHcCcch-hHHHHHH
Confidence 4579999999999876 6666543
No 9
>d2hwna1 a.31.1.1 (A:5-43) cAMP-dependent protein kinase type II regulatory subunit {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.63 E-value=1.2e+02 Score=15.96 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=14.7
Q ss_pred hhhhcchhhHHhHHHHHhhhHHHHHH
Q 023812 165 GVMAIFRGGSTTFLREAIGNAVFFSV 190 (277)
Q Consensus 165 Gi~glyrG~~~~~lr~~p~~~i~f~~ 190 (277)
|+..+-++++--++|.=|...+.|..
T Consensus 4 gL~~lL~~ftrevLR~qP~di~~faa 29 (39)
T d2hwna1 4 GLTELLQGYTVEVLRQQPPDLVDFAV 29 (39)
T ss_dssp THHHHHHHHHHHHHHHCCSCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHCCchHHHHHH
Confidence 45555566666666666655444443
No 10
>d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein, LtrC {Listeria monocytogenes [TaxId: 1639]}
Probab=9.12 E-value=1.9e+02 Score=20.18 Aligned_cols=47 Identities=15% Similarity=0.066 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 023812 184 NAVFFSVYEHVRYYMHLKLKAASSDHSNLIDMGIGIVSGGLGGVAVSIL 232 (277)
Q Consensus 184 ~~i~f~~ye~lk~~~~~~~~~~~~~~~~~~~~~~~~~sg~~ag~~a~~~ 232 (277)
..+.|..+|..|....++.++ ......-.+.=.+++|.+|++.+.+.
T Consensus 108 gf~~Fr~~D~~Kpg~i~~ld~--~~~g~~gv~lDDivagi~Aa~~srla 154 (159)
T d1y9ia_ 108 GFTNYGYIDKVKPGILAKLNE--HDGIAVHTFLDDIVGAIAAAAASRLA 154 (159)
T ss_dssp GHHHHHHHHHHCCTHHHHTTC--CCSSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchHHHHHHHh--cCCCCccchHHHHHHHHHHHHHHHHH
Done!