Query 023813
Match_columns 277
No_of_seqs 131 out of 1186
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 06:50:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 9.8E-36 2.1E-40 268.3 27.9 268 7-276 9-311 (358)
2 PRK11272 putative DMT superfam 100.0 5.1E-32 1.1E-36 239.2 28.1 254 11-275 8-267 (292)
3 PRK11453 O-acetylserine/cystei 100.0 5.2E-31 1.1E-35 233.6 25.7 251 13-275 6-269 (299)
4 PRK11689 aromatic amino acid e 100.0 3.7E-31 8E-36 234.1 24.7 249 9-275 2-269 (295)
5 PRK10532 threonine and homoser 100.0 7.8E-31 1.7E-35 231.8 25.8 253 5-275 6-263 (293)
6 PRK15430 putative chlorampheni 100.0 7.9E-31 1.7E-35 232.1 24.9 262 5-276 2-268 (296)
7 TIGR00950 2A78 Carboxylate/Ami 100.0 1E-29 2.2E-34 220.5 25.5 240 23-275 1-246 (260)
8 TIGR00688 rarD rarD protein. T 100.0 8.6E-29 1.9E-33 214.6 23.8 249 11-268 2-255 (256)
9 TIGR03340 phn_DUF6 phosphonate 99.9 7.3E-26 1.6E-30 198.9 21.7 256 13-275 3-265 (281)
10 TIGR00817 tpt Tpt phosphate/ph 99.9 2.7E-25 6E-30 197.2 23.7 245 28-276 19-276 (302)
11 PTZ00343 triose or hexose phos 99.9 1.4E-22 2.9E-27 183.2 26.5 246 25-275 63-330 (350)
12 COG0697 RhaT Permeases of the 99.9 5.3E-22 1.2E-26 173.8 27.3 258 7-275 3-269 (292)
13 PF06027 DUF914: Eukaryotic pr 99.9 9.7E-19 2.1E-23 155.4 27.5 261 11-275 13-287 (334)
14 COG5006 rhtA Threonine/homoser 99.9 1.3E-19 2.7E-24 150.7 19.9 248 12-276 13-265 (292)
15 COG2962 RarD Predicted permeas 99.8 2.4E-18 5.2E-23 146.5 22.6 261 7-276 3-266 (293)
16 TIGR00776 RhaT RhaT L-rhamnose 99.8 3.8E-18 8.2E-23 150.5 23.0 244 13-276 3-267 (290)
17 KOG4510 Permease of the drug/m 99.6 2.3E-16 4.9E-21 132.3 3.6 252 11-275 38-307 (346)
18 PF08449 UAA: UAA transporter 99.5 6.4E-12 1.4E-16 111.7 24.6 230 40-275 32-279 (303)
19 COG2510 Predicted membrane pro 99.5 1.6E-13 3.4E-18 103.0 10.3 132 12-145 4-136 (140)
20 PF00892 EamA: EamA-like trans 99.5 1.2E-13 2.6E-18 105.8 8.1 120 21-144 1-122 (126)
21 KOG2765 Predicted membrane pro 99.4 6.3E-12 1.4E-16 110.5 12.9 188 88-275 170-372 (416)
22 PF04142 Nuc_sug_transp: Nucle 99.3 6.3E-10 1.4E-14 95.6 19.9 201 73-275 13-235 (244)
23 TIGR00950 2A78 Carboxylate/Ami 99.3 9.2E-11 2E-15 101.6 14.4 128 7-139 124-254 (260)
24 PF00892 EamA: EamA-like trans 99.2 2.7E-11 5.8E-16 92.6 7.7 108 164-275 1-108 (126)
25 COG2510 Predicted membrane pro 99.1 1E-09 2.2E-14 82.7 11.8 117 156-275 5-121 (140)
26 PF13536 EmrE: Multidrug resis 99.1 8.9E-11 1.9E-15 89.1 5.9 102 45-147 2-105 (113)
27 KOG1441 Glucose-6-phosphate/ph 99.1 1.2E-09 2.5E-14 96.5 13.1 245 27-275 33-289 (316)
28 KOG2234 Predicted UDP-galactos 99.0 2.7E-07 5.9E-12 81.4 24.3 259 11-275 15-304 (345)
29 KOG2766 Predicted membrane pro 99.0 1.1E-09 2.3E-14 91.9 8.1 222 39-275 47-281 (336)
30 PRK10532 threonine and homoser 98.9 3.3E-08 7.2E-13 87.4 14.2 123 10-138 147-270 (293)
31 PRK11272 putative DMT superfam 98.9 2.9E-08 6.4E-13 87.7 13.8 127 9-139 148-275 (292)
32 KOG1444 Nucleotide-sugar trans 98.8 2.7E-06 5.9E-11 74.2 21.1 246 26-275 27-282 (314)
33 PRK11689 aromatic amino acid e 98.8 1.4E-07 3.1E-12 83.4 12.9 123 10-139 155-277 (295)
34 KOG1580 UDP-galactose transpor 98.7 4.1E-07 8.9E-12 75.8 11.8 229 41-275 54-295 (337)
35 PRK15430 putative chlorampheni 98.7 3.9E-07 8.5E-12 80.7 12.3 120 152-275 6-127 (296)
36 PLN00411 nodulin MtN21 family 98.6 9.5E-07 2.1E-11 80.2 14.6 121 12-135 190-314 (358)
37 TIGR03340 phn_DUF6 phosphonate 98.6 1.4E-07 3E-12 83.0 8.9 130 10-143 143-278 (281)
38 PRK11453 O-acetylserine/cystei 98.6 2.5E-06 5.5E-11 75.6 14.8 128 10-138 142-276 (299)
39 TIGR00688 rarD rarD protein. T 98.5 1.1E-06 2.4E-11 76.1 11.9 119 154-275 2-124 (256)
40 TIGR00817 tpt Tpt phosphate/ph 98.5 9E-07 2E-11 78.5 9.8 125 9-135 143-279 (302)
41 KOG1581 UDP-galactose transpor 98.4 6.5E-05 1.4E-09 65.1 18.3 231 39-275 50-295 (327)
42 PF03151 TPT: Triose-phosphate 98.4 1.1E-05 2.3E-10 64.0 13.0 125 13-138 2-142 (153)
43 PF03151 TPT: Triose-phosphate 98.4 7.8E-06 1.7E-10 64.8 11.8 120 155-275 1-135 (153)
44 PF06800 Sugar_transport: Suga 98.4 3.5E-05 7.6E-10 66.6 16.3 190 75-274 43-248 (269)
45 TIGR00776 RhaT RhaT L-rhamnose 98.3 9.7E-06 2.1E-10 71.6 12.6 120 10-140 151-279 (290)
46 KOG1443 Predicted integral mem 98.3 0.00023 5E-09 61.9 20.2 203 71-274 77-296 (349)
47 COG0697 RhaT Permeases of the 98.2 3.4E-05 7.3E-10 67.2 14.1 123 10-139 153-277 (292)
48 PTZ00343 triose or hexose phos 98.2 5E-05 1.1E-09 68.9 14.6 130 9-139 192-338 (350)
49 PRK15051 4-amino-4-deoxy-L-ara 98.1 9.7E-06 2.1E-10 61.1 6.9 62 81-142 40-102 (111)
50 COG5006 rhtA Threonine/homoser 98.0 6E-05 1.3E-09 63.7 10.6 133 7-144 144-277 (292)
51 PF13536 EmrE: Multidrug resis 97.8 9.6E-05 2.1E-09 55.8 6.8 56 219-275 33-88 (113)
52 PRK13499 rhamnose-proton sympo 97.7 0.015 3.1E-07 52.5 21.4 260 8-274 4-316 (345)
53 KOG3912 Predicted integral mem 97.7 0.001 2.3E-08 57.2 12.8 120 83-202 92-225 (372)
54 PRK02971 4-amino-4-deoxy-L-ara 97.7 0.00054 1.2E-08 53.0 9.8 112 12-144 3-118 (129)
55 PF05653 Mg_trans_NIPA: Magnes 97.7 0.0029 6.4E-08 56.1 15.7 238 7-274 3-267 (300)
56 TIGR00803 nst UDP-galactose tr 97.7 0.0003 6.6E-09 59.5 9.1 119 152-275 83-206 (222)
57 PRK02971 4-amino-4-deoxy-L-ara 97.6 0.00086 1.9E-08 51.9 10.2 101 154-275 2-104 (129)
58 COG5070 VRG4 Nucleotide-sugar 97.6 0.00042 9E-09 57.7 8.7 226 41-274 38-277 (309)
59 KOG4314 Predicted carbohydrate 97.4 0.0011 2.4E-08 54.2 9.1 92 88-179 64-160 (290)
60 PF06027 DUF914: Eukaryotic pr 97.4 0.0024 5.1E-08 57.4 12.0 138 7-147 164-304 (334)
61 PF06800 Sugar_transport: Suga 97.4 0.00098 2.1E-08 57.7 8.9 120 7-135 134-253 (269)
62 COG2962 RarD Predicted permeas 97.4 0.0017 3.6E-08 56.3 10.2 121 152-275 5-126 (293)
63 KOG1442 GDP-fucose transporter 97.2 0.004 8.6E-08 53.6 10.6 235 39-274 60-308 (347)
64 PF08449 UAA: UAA transporter 97.2 0.0054 1.2E-07 54.5 11.8 127 12-139 155-287 (303)
65 PRK15051 4-amino-4-deoxy-L-ara 97.1 0.0025 5.4E-08 48.0 7.3 49 227-275 43-91 (111)
66 KOG2922 Uncharacterized conser 96.7 0.017 3.6E-07 50.9 10.1 237 4-273 14-280 (335)
67 KOG1582 UDP-galactose transpor 96.7 0.035 7.6E-07 47.8 11.5 243 25-274 57-313 (367)
68 PF10639 UPF0546: Uncharacteri 96.5 0.0088 1.9E-07 44.9 6.0 108 17-146 2-112 (113)
69 PF00893 Multi_Drug_Res: Small 96.3 0.0094 2E-07 43.3 5.4 50 88-137 40-90 (93)
70 PRK10650 multidrug efflux syst 96.3 0.038 8.2E-07 41.3 8.6 57 88-144 46-103 (109)
71 KOG4510 Permease of the drug/m 96.3 0.0017 3.7E-08 55.6 1.4 123 10-136 190-312 (346)
72 COG4975 GlcU Putative glucose 96.3 0.00059 1.3E-08 57.7 -1.6 243 12-274 3-262 (288)
73 PRK10452 multidrug efflux syst 95.9 0.021 4.5E-07 43.5 5.4 64 84-147 36-101 (120)
74 PRK13499 rhamnose-proton sympo 95.9 0.18 3.9E-06 45.5 12.2 125 8-133 171-321 (345)
75 PRK09541 emrE multidrug efflux 95.6 0.034 7.3E-07 41.7 5.4 61 84-144 36-98 (110)
76 PRK11431 multidrug efflux syst 95.6 0.042 9.2E-07 40.8 5.9 57 88-144 40-97 (105)
77 PF04657 DUF606: Protein of un 95.6 0.34 7.3E-06 37.9 11.3 118 17-138 7-130 (138)
78 COG2076 EmrE Membrane transpor 95.3 0.038 8.2E-07 40.9 4.9 59 84-142 36-96 (106)
79 KOG1441 Glucose-6-phosphate/ph 94.8 0.079 1.7E-06 47.2 6.3 101 8-110 160-268 (316)
80 KOG1583 UDP-N-acetylglucosamin 94.7 0.31 6.7E-06 42.3 9.3 224 41-275 34-296 (330)
81 PF04657 DUF606: Protein of un 94.5 0.57 1.2E-05 36.6 9.9 108 156-267 3-111 (138)
82 PF05653 Mg_trans_NIPA: Magnes 94.3 0.19 4.2E-06 44.6 7.6 101 150-275 3-104 (300)
83 PF00893 Multi_Drug_Res: Small 93.8 0.15 3.2E-06 37.0 4.9 47 230-276 38-85 (93)
84 KOG2765 Predicted membrane pro 93.3 0.4 8.7E-06 43.3 7.7 130 7-137 243-378 (416)
85 KOG1581 UDP-galactose transpor 92.5 1.7 3.7E-05 38.3 10.2 129 11-140 172-304 (327)
86 KOG1580 UDP-galactose transpor 92.0 0.2 4.3E-06 42.5 3.8 60 77-136 241-300 (337)
87 KOG1444 Nucleotide-sugar trans 91.2 1.3 2.8E-05 39.3 8.1 125 8-132 154-283 (314)
88 TIGR00803 nst UDP-galactose tr 88.9 2.7 5.9E-05 35.2 8.3 56 84-139 159-214 (222)
89 PRK10452 multidrug efflux syst 87.0 1.7 3.7E-05 33.1 5.2 49 228-276 37-86 (120)
90 PRK09541 emrE multidrug efflux 86.3 2 4.2E-05 32.2 5.2 46 230-275 39-85 (110)
91 COG4975 GlcU Putative glucose 84.0 0.087 1.9E-06 44.8 -3.4 118 10-136 151-268 (288)
92 PRK10650 multidrug efflux syst 82.9 13 0.00028 27.7 8.3 47 230-276 44-91 (109)
93 COG2076 EmrE Membrane transpor 82.8 3.3 7.1E-05 30.7 4.9 46 230-275 39-85 (106)
94 PRK11431 multidrug efflux syst 81.5 4.3 9.2E-05 30.1 5.2 47 230-276 38-85 (105)
95 COG3238 Uncharacterized protei 76.3 37 0.00079 26.9 10.1 108 13-122 7-115 (150)
96 COG3238 Uncharacterized protei 72.9 45 0.00098 26.4 9.9 111 154-267 5-116 (150)
97 COG5070 VRG4 Nucleotide-sugar 70.0 21 0.00046 30.3 6.8 95 37-132 182-279 (309)
98 KOG3912 Predicted integral mem 63.1 79 0.0017 28.0 9.1 54 6-59 171-225 (372)
99 KOG2922 Uncharacterized conser 63.1 7.2 0.00016 34.7 2.9 102 150-275 17-118 (335)
100 PF04142 Nuc_sug_transp: Nucle 62.9 98 0.0021 26.5 12.4 122 9-132 112-236 (244)
101 KOG4831 Unnamed protein [Funct 54.1 49 0.0011 24.6 5.4 101 13-132 5-108 (125)
102 KOG4314 Predicted carbohydrate 51.0 16 0.00035 30.4 2.9 42 233-274 65-106 (290)
103 PF10639 UPF0546: Uncharacteri 43.7 83 0.0018 23.6 5.5 45 230-274 50-95 (113)
104 PF05297 Herpes_LMP1: Herpesvi 38.5 10 0.00023 33.1 0.0 31 176-206 128-160 (381)
105 PF06570 DUF1129: Protein of u 38.0 92 0.002 25.8 5.7 18 12-29 112-129 (206)
106 KOG1442 GDP-fucose transporter 36.4 2.4E+02 0.0052 25.0 7.8 123 10-132 184-310 (347)
107 PF02673 BacA: Bacitracin resi 32.9 2.8E+02 0.0061 24.0 8.0 93 9-108 78-172 (259)
108 PF07857 DUF1632: CEO family ( 32.2 1.2E+02 0.0027 26.2 5.6 56 7-62 179-245 (254)
109 KOG1582 UDP-galactose transpor 27.6 2.1E+02 0.0045 25.3 6.0 96 37-132 217-315 (367)
110 KOG2766 Predicted membrane pro 25.4 77 0.0017 27.6 3.1 65 6-74 161-225 (336)
111 PF07123 PsbW: Photosystem II 24.4 62 0.0014 25.1 2.1 48 124-180 85-132 (138)
112 PF09945 DUF2177: Predicted me 22.3 3.5E+02 0.0076 20.8 5.9 44 156-201 78-121 (128)
113 PF11139 DUF2910: Protein of u 20.9 4.8E+02 0.01 21.5 8.6 18 112-129 161-178 (214)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=9.8e-36 Score=268.30 Aligned_cols=268 Identities=45% Similarity=0.754 Sum_probs=222.5
Q ss_pred hHhHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHH
Q 023813 7 FREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFI 86 (277)
Q Consensus 7 ~~~~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 86 (277)
+++.|+++.++++++.+++..++.|.+++.+++|..++++|+.+|+++++++...+ +|+++.++.+++++.++.+.|++
T Consensus 9 ~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~-~~~~~~~~~~~~~~~~l~l~g~~ 87 (358)
T PLN00411 9 RREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFT-NRSRSLPPLSVSILSKIGLLGFL 87 (358)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHH-HHhcccCcchHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999988765 33222134568888999999999
Q ss_pred HHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHH------hhccccccccchhh-hhhhhhheec--c--------
Q 023813 87 GVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLF------RMEKLALRTLSTQA-KIIGTMVSIS--V-------- 149 (277)
Q Consensus 87 ~~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~------~~e~~~~~~~~~i~-~~~g~~~~~~--~-------- 149 (277)
+.+++.+++.|++|+++++++++.+++|+++.++++++ +|||++++++.|+. .+.|+.+... +
T Consensus 88 g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~ 167 (358)
T PLN00411 88 GSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASS 167 (358)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccc
Confidence 87777899999999999999999999999999999988 59999999998876 5677665442 1
Q ss_pred -----------------CchhhHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhcCCC-Ccc
Q 023813 150 -----------------SNWVTGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPD-LSL 211 (277)
Q Consensus 150 -----------------~~~~~G~~l~l~~a~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-~~~ 211 (277)
++...|+.+.+.++++||+|++.+|+..+++|++...++|++.++++...+.....+++ ...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~ 247 (358)
T PLN00411 168 PPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSV 247 (358)
T ss_pred cccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 11245999999999999999999999988887656778888888888777776665432 223
Q ss_pred ccccchhhHHHHHHHHHHhHHHHHHHHHHHhhccCceeehhhhhhHHHHHHHHHHHHhCCcccCC
Q 023813 212 WRLKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHLG 276 (277)
Q Consensus 212 ~~~~~~~~~~~l~~~gv~~t~~~~~~~~~~~~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~~ 276 (277)
|...++.....++|.+++ +.++|.+|++++++.||++++.+.+++|++++++|++++||++++.
T Consensus 248 ~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~ 311 (358)
T PLN00411 248 WIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG 311 (358)
T ss_pred ceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH
Confidence 322222234567888875 6789999999999999999999999999999999999999999874
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=100.00 E-value=5.1e-32 Score=239.21 Aligned_cols=254 Identities=15% Similarity=0.118 Sum_probs=209.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHH-HH
Q 023813 11 LLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VL 89 (277)
Q Consensus 11 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 89 (277)
.-...+++..++||.+++++|...+ ++||.+++++|+.+++++++++...+ ++ +. .+++++......|.++ ..
T Consensus 8 ~~~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~-~~-~~---~~~~~~~~~~~~g~~~~~~ 81 (292)
T PRK11272 8 PLFGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLR-GH-PL---PTLRQWLNAALIGLLLLAV 81 (292)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHh-CC-CC---CcHHHHHHHHHHHHHHHHH
Confidence 3456678889999999999999875 69999999999999999998886543 22 11 2467888888889887 77
Q ss_pred HHHHHHHhc-cccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhh-hhhhhhheecc---CchhhHHHHHHHHHH
Q 023813 90 SQIFGYTGI-ACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQA-KIIGTMVSISV---SNWVTGGFLLAAQCF 164 (277)
Q Consensus 90 ~~~~~~~~l-~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~-~~~g~~~~~~~---~~~~~G~~l~l~~a~ 164 (277)
++.+++.+. +++++++++++.++.|+++++++.+ +|||++++++.++. ..+|+.+...+ ++...|+++.+.+++
T Consensus 82 ~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~ 160 (292)
T PRK11272 82 GNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASA 160 (292)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHH
Confidence 888999999 9999999999999999999999985 69999999998875 45776554332 123469999999999
Q ss_pred HHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhHHHHHHHHHHhHHHHHHHHHHHhhc
Q 023813 165 LLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLRL 244 (277)
Q Consensus 165 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~t~~~~~~~~~~~~~ 244 (277)
+||.|++..||..++. +...+.+++.++++...+.....+.+.. ...+.+.|..++++++++|.++|.+|++++|+
T Consensus 161 ~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~ 236 (292)
T PRK11272 161 SWAFGSVWSSRLPLPV--GMMAGAAEMLAAGVVLLIASLLSGERLT--ALPTLSGFLALGYLAVFGSIIAISAYMYLLRN 236 (292)
T ss_pred HHHHHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHHcCCccc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999875443 3566778888888887777665443211 11233568899999999999999999999999
Q ss_pred cCceeehhhhhhHHHHHHHHHHHHhCCcccC
Q 023813 245 KGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 245 ~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~ 275 (277)
.++++++.+.++||+++++++++++||++|+
T Consensus 237 ~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~ 267 (292)
T PRK11272 237 VRPALATSYAYVNPVVAVLLGTGLGGETLSP 267 (292)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 9999999999999999999999999999985
No 3
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=100.00 E-value=5.2e-31 Score=233.56 Aligned_cols=251 Identities=15% Similarity=0.098 Sum_probs=194.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHH-HHHH
Q 023813 13 LSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VLSQ 91 (277)
Q Consensus 13 ~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~ 91 (277)
.+..++++++||.+++++|.+++ ++||.+++++|+.++++.+.++. + +++ .+++ .....|++. ..++
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~--~-~~~-----~~~~---~~~~~g~~~~~~~~ 73 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFV--A-RPK-----VPLN---LLLGYGLTISFGQF 73 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHh--c-CCC-----CchH---HHHHHHHHHHHHHH
Confidence 35578889999999999999886 59999999999999887766553 2 111 1222 233446655 5566
Q ss_pred HHHHHhccc-cChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhh-hhhhhhheecc----Cc-hhhHHHHHHHHHH
Q 023813 92 IFGYTGIAC-SSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQA-KIIGTMVSISV----SN-WVTGGFLLAAQCF 164 (277)
Q Consensus 92 ~~~~~~l~~-~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~-~~~g~~~~~~~----~~-~~~G~~l~l~~a~ 164 (277)
.+++.++++ .++++++++.+++|+++.+++++++|||++++++.+.. ..+|+.+.+.+ .+ ...|+.+++.+++
T Consensus 74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal 153 (299)
T PRK11453 74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAF 153 (299)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHH
Confidence 788899998 58899999999999999999999999999999999876 56776665531 11 2369999999999
Q ss_pred HHHHHHHHHHHHHhhCChh--HHHHHHHHHHHHHHHHHHHHhcCCCC---ccccccchhhHHHHHHHHHHhHHHHHHHHH
Q 023813 165 LLSIWSILLTQIINIYPAE--LLVAFLYNLFAAVIAVPLCLFAEPDL---SLWRLKPDVALVSIVYSAFLGPSFNTIIHT 239 (277)
Q Consensus 165 ~~a~~~v~~~~~~~~~~~~--~~~~~~~~~~g~i~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~gv~~t~~~~~~~~ 239 (277)
+||+|++.+||..++.+++ .....+++..+.+.........+++. ..+...+...|..++|+|+++|+++|.+|+
T Consensus 154 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~ 233 (299)
T PRK11453 154 SWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWG 233 (299)
T ss_pred HHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999986654422 34455666666655554444433321 112222345688999999999999999999
Q ss_pred HHhhccCceeehhhhhhHHHHHHHHHHHHhCCcccC
Q 023813 240 WGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 240 ~~~~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~ 275 (277)
++++|.++++++.+.++||+++.++|++++||++++
T Consensus 234 ~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~ 269 (299)
T PRK11453 234 TLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTG 269 (299)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccH
Confidence 999999999999999999999999999999999986
No 4
>PRK11689 aromatic amino acid exporter; Provisional
Probab=100.00 E-value=3.7e-31 Score=234.06 Aligned_cols=249 Identities=13% Similarity=0.068 Sum_probs=190.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHH-
Q 023813 9 EALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG- 87 (277)
Q Consensus 9 ~~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~- 87 (277)
|.|+++.++.++++||++++..|.+.+ ++||..+.++|+.++++++.++. + +++ . ++.++ +....+.++
T Consensus 2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~-~~~P~~~~~~R~~~a~l~l~~~~--~-~~~-~-~~~~~----~~~~~~~l~~ 71 (295)
T PRK11689 2 SQKATLIGLIAILLWSTMVGLIRGVSE-SLGPVGGAAMIYSVSGLLLLLTV--G-FPR-L-RQFPK----RYLLAGGLLF 71 (295)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHHHHc--c-ccc-c-ccccH----HHHHHHhHHH
Confidence 567788999999999999999999876 49999999999999999888753 1 111 1 11112 222334545
Q ss_pred HHHHHHHHHhcc----ccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhh-hhhhhhheeccC------------
Q 023813 88 VLSQIFGYTGIA----CSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQA-KIIGTMVSISVS------------ 150 (277)
Q Consensus 88 ~~~~~~~~~~l~----~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~-~~~g~~~~~~~~------------ 150 (277)
..++.+++.+++ ++++++++++.+++|+++.+++++++|||++++++.++. ..+|+.+...++
T Consensus 72 ~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~ 151 (295)
T PRK11689 72 VSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNI 151 (295)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhcc
Confidence 777888888775 467888999999999999999999999999999999876 567776665421
Q ss_pred -chhhHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhHHHHHHHHHH
Q 023813 151 -NWVTGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIVYSAFL 229 (277)
Q Consensus 151 -~~~~G~~l~l~~a~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~ 229 (277)
+...|+++.+.+++|||.|++..||..++.+ +.... . ..+++.+.+.....+.+ ..+ .+.+.|..+++.++
T Consensus 152 ~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~-~~~~~--~-~~~~~~l~~~~~~~~~~--~~~-~~~~~~~~l~~~~~- 223 (295)
T PRK11689 152 ASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN-GITLF--F-ILTALALWIKYFLSPQP--AMV-FSLPAIIKLLLAAA- 223 (295)
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhccCCCC-chhHH--H-HHHHHHHHHHHHHhcCc--ccc-CCHHHHHHHHHHHH-
Confidence 1235999999999999999999999876655 45432 2 23333333333332211 111 23346777888885
Q ss_pred hHHHHHHHHHHHhhccCceeehhhhhhHHHHHHHHHHHHhCCcccC
Q 023813 230 GPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 230 ~t~~~~~~~~~~~~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~ 275 (277)
+++++|.+|++++|+.++++++.+.+++|+++++++++++||++++
T Consensus 224 ~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~ 269 (295)
T PRK11689 224 AMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSF 269 (295)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcH
Confidence 8999999999999999999999999999999999999999999985
No 5
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=100.00 E-value=7.8e-31 Score=231.78 Aligned_cols=253 Identities=16% Similarity=0.108 Sum_probs=201.0
Q ss_pred hhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHH
Q 023813 5 KFFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLS 84 (277)
Q Consensus 5 ~~~~~~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 84 (277)
+|.++.+++..+++++.+|+.++.++|.+.++ +||.+++++|+.++++++.++...+ +. +.+++++......|
T Consensus 6 ~~~~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~~---~~---~~~~~~~~~~~~~g 78 (293)
T PRK10532 6 RKLPVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKPW---RL---RFAKEQRLPLLFYG 78 (293)
T ss_pred cccccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhHH---hc---cCCHHHHHHHHHHH
Confidence 44566889999999999999999999999875 9999999999999999888764321 11 23567787888888
Q ss_pred HHHHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhhhhhhhhheec-----cCchhhHHHHH
Q 023813 85 FIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSIS-----VSNWVTGGFLL 159 (277)
Q Consensus 85 ~~~~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~~~g~~~~~~-----~~~~~~G~~l~ 159 (277)
++.+..+.+++++++|++++.++++.+++|+++.+++ +|++++.++.++ .+.|+.+.+. ++....|+++.
T Consensus 79 ~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~~~~~i-~~~Gv~li~~~~~~~~~~~~~G~ll~ 153 (293)
T PRK10532 79 VSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDFVWVVL-AVLGLWFLLPLGQDVSHVDLTGAALA 153 (293)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHHHHHHH-HHHHHheeeecCCCcccCChHHHHHH
Confidence 8887788999999999999999999999999998876 355554444322 3566655442 11234699999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhHHHHHHHHHHhHHHHHHHHH
Q 023813 160 AAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIVYSAFLGPSFNTIIHT 239 (277)
Q Consensus 160 l~~a~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~t~~~~~~~~ 239 (277)
+.++++||.|++..||..++.+ +... .++..++++...+.....+.+ ..+ +...|..++++|+++|.++|.+|+
T Consensus 154 l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~~-~~~---~~~~~~~~l~lgv~~t~~~~~l~~ 227 (293)
T PRK10532 154 LGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQAGE-ALW---HWSILPLGLAVAILSTALPYSLEM 227 (293)
T ss_pred HHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHccCc-ccC---CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999877765 4555 466677777777666543321 111 223466678999999999999999
Q ss_pred HHhhccCceeehhhhhhHHHHHHHHHHHHhCCcccC
Q 023813 240 WGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 240 ~~~~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~ 275 (277)
++++|.+++++|.+.++||+++.++|++++||++++
T Consensus 228 ~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~ 263 (293)
T PRK10532 228 IALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTL 263 (293)
T ss_pred HHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcH
Confidence 999999999999999999999999999999999985
No 6
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=100.00 E-value=7.9e-31 Score=232.07 Aligned_cols=262 Identities=10% Similarity=0.014 Sum_probs=192.4
Q ss_pred hhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCCc-hHHHHHHHHH
Q 023813 5 KFFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTV-VPSF-KFSILSRIIL 82 (277)
Q Consensus 5 ~~~~~~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-~~~~-~~~~~~~~~~ 82 (277)
|++++.|+++..++++++||.+++++|.. + ++||.++.++|+.++.+++.++...+ +++.. .++. +++++....
T Consensus 2 ~~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~- 77 (296)
T PRK15430 2 DAKQTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSIC-RQWSYLKTLIQTPQKIFMLA- 77 (296)
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHHHcCHHHHHHHH-
Confidence 34577889999999999999999999985 4 59999999999999998887776543 21110 0011 234443333
Q ss_pred HHHHH-HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhh-hhhhhhheeccCchhhHHHHHH
Q 023813 83 LSFIG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQA-KIIGTMVSISVSNWVTGGFLLA 160 (277)
Q Consensus 83 ~g~~~-~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~-~~~g~~~~~~~~~~~~G~~l~l 160 (277)
.+.++ +.++.++++|++++++++++++.+++|+++.+++++++|||+++++|.++. .++|+.+.+..++.. ..+.+
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~--~~~~l 155 (296)
T PRK15430 78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL--PIIAL 155 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc--cHHHH
Confidence 55555 889999999999999999999999999999999999999999999999886 568877665322211 25788
Q ss_pred HHHHHHHHHHHHHHHHHhhC-ChhHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhHHHHHHHHHHhHHHHHHHHH
Q 023813 161 AQCFLLSIWSILLTQIINIY-PAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIVYSAFLGPSFNTIIHT 239 (277)
Q Consensus 161 ~~a~~~a~~~v~~~~~~~~~-~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~t~~~~~~~~ 239 (277)
.++++||.|++..|+..++. .+....+.++..++........ +.+...+...+...+..+.+.|+ .+.++|.+|+
T Consensus 156 ~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~-~t~i~~~~~~ 231 (296)
T PRK15430 156 GLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSSTSHMGQNPMSLNLLLIAAGI-VTTVPLLCFT 231 (296)
T ss_pred HHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCcccccCCcHHHHHHHHHHHH-HHHHHHHHHH
Confidence 89999999999998875332 1223444555555554422221 11111111111112333444455 7889999999
Q ss_pred HHhhccCceeehhhhhhHHHHHHHHHHHHhCCcccCC
Q 023813 240 WGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHLG 276 (277)
Q Consensus 240 ~~~~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~~ 276 (277)
+++|+.|++++|++.+++|+++.++|++++||++++.
T Consensus 232 ~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~ 268 (296)
T PRK15430 232 AAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD 268 (296)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 9999999999999999999999999999999999863
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.97 E-value=1e-29 Score=220.48 Aligned_cols=240 Identities=18% Similarity=0.229 Sum_probs=199.6
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHH-HHHHHHHHHhcccc
Q 023813 23 TVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VLSQIFGYTGIACS 101 (277)
Q Consensus 23 wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~ 101 (277)
||.+++.+|...++..||.+..+.|+..+.+.+.+.... | + +++++.+....|.++ .+++.+++.|++|+
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~---~--~----~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~ 71 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR---R--P----PLKRLLRLLLLGALQIGVFYVLYFVAVKRL 71 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh---c--c----CHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999998777899999999999998888776421 2 1 245666777788887 89999999999999
Q ss_pred ChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhh-hhhhhhheecc---CchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023813 102 SPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQA-KIIGTMVSISV---SNWVTGGFLLAAQCFLLSIWSILLTQII 177 (277)
Q Consensus 102 ~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~-~~~g~~~~~~~---~~~~~G~~l~l~~a~~~a~~~v~~~~~~ 177 (277)
++++++++.++.|+++++++.+++|||++++++.++. ..+|+.+.... ++...|+.+.+.++++|+.+++..|+..
T Consensus 72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~ 151 (260)
T TIGR00950 72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLV 151 (260)
T ss_pred ChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 9999999999999999999999999999999999876 45776665442 2345799999999999999999999988
Q ss_pred hhCCh-hHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhHHHHHHHHHHhHHHHHHHHHHHhhccCceeehhhhhh
Q 023813 178 NIYPA-ELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPL 256 (277)
Q Consensus 178 ~~~~~-~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~t~~~~~~~~~~~~~~~~~~~s~~~~l 256 (277)
++.+. +.....+.+.++++...+.....+++. .. +...|..+++.+++++.++|.+|++++|+.++++++.+.++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~ 227 (260)
T TIGR00950 152 KKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALA 227 (260)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 76542 234555778888888777766544321 11 33467788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcccC
Q 023813 257 SVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 257 ~pv~a~i~~~~~l~E~~~~ 275 (277)
+|+++.+++++++||++++
T Consensus 228 ~pv~~~ll~~~~~~E~~~~ 246 (260)
T TIGR00950 228 EPLVALLLGLLILGETLSL 246 (260)
T ss_pred HHHHHHHHHHHHhCCCCCH
Confidence 9999999999999999985
No 8
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.97 E-value=8.6e-29 Score=214.63 Aligned_cols=249 Identities=9% Similarity=0.023 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCC---CCCCchHHH-HHHHHHHHHH
Q 023813 11 LLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTT---VVPSFKFSI-LSRIILLSFI 86 (277)
Q Consensus 11 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~g~~ 86 (277)
|++...++++++||.+++++|. .+ ++||.+++++|+.++.+++.++...++++++ +.++.++++ +..+...|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 5788999999999999999998 44 4999999999999999888777654411110 101122333 4456677877
Q ss_pred HHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhh-hhhhhhheeccCchhhHHHHHHHHHHH
Q 023813 87 GVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQA-KIIGTMVSISVSNWVTGGFLLAAQCFL 165 (277)
Q Consensus 87 ~~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~-~~~g~~~~~~~~~~~~G~~l~l~~a~~ 165 (277)
+..++.++++|++++++++++++.+++|+++++++++++|||+++++|.++. ..+|+.+...+++.. ..+++.++++
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~--~~~~l~aa~~ 157 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSL--PWEALVLAFS 157 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCc--hHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999876 557766543321111 1467899999
Q ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhHHHHHHHHHHhHHHHHHHHHHHhhcc
Q 023813 166 LSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLRLK 245 (277)
Q Consensus 166 ~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~t~~~~~~~~~~~~~~ 245 (277)
||.|.+..|+..++ +. ...... .........+.... +.++...+..+...|..+++.|++ |.++|.+|++++|+.
T Consensus 158 ~a~~~i~~~~~~~~-~~-~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l~~~a~~~~ 232 (256)
T TIGR00688 158 FTAYGLIRKALKNT-DL-AGFCLE-TLSLMPVAIYYLLQ-TDFATVQQTNPFPIWLLLVLAGLI-TGTPLLAFVIAANRL 232 (256)
T ss_pred HHHHHHHHhhcCCC-Cc-chHHHH-HHHHHHHHHHHHHH-hccCcccccCchhHHHHHHHHHHH-HHHHHHHHHHHHHcC
Confidence 99999999887543 32 222211 11111111111111 111111111222368888888886 899999999999999
Q ss_pred CceeehhhhhhHHHHHHHHHHHH
Q 023813 246 GPVYIAIFKPLSVVIAAITGIIF 268 (277)
Q Consensus 246 ~~~~~s~~~~l~pv~a~i~~~~~ 268 (277)
|+++++++.|+||+++.+++++.
T Consensus 233 ~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 233 PLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999764
No 9
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.95 E-value=7.3e-26 Score=198.91 Aligned_cols=256 Identities=15% Similarity=0.033 Sum_probs=184.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 023813 13 LSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQI 92 (277)
Q Consensus 13 ~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 92 (277)
....+.++++|+..+...|...++ -++ ..++++..+++++.++...+..++.+ ++.+++++......++.+..++.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 78 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYLAQVGW-SRLPATFWLLLAISAVANMVYFL 78 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhcccCCC-CCcchhhHHHHHHHHHHHHHHHH
Confidence 456678999999999999975444 344 35888888888888776543112222 22334444444444544589999
Q ss_pred HHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhhh-hhhhhheecc---CchhhHHHHHHHHHHHHHH
Q 023813 93 FGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAK-IIGTMVSISV---SNWVTGGFLLAAQCFLLSI 168 (277)
Q Consensus 93 ~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~-~~g~~~~~~~---~~~~~G~~l~l~~a~~~a~ 168 (277)
+++.|++++++++++.+.++.|+++.+++++++|||+++++|.|+.. ..|+.+...+ +....|+.+++.++++|+.
T Consensus 79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~ 158 (281)
T TIGR03340 79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAI 158 (281)
T ss_pred HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999874 4666554431 1234688899999999999
Q ss_pred HHHHHHHHHhhCChh---HHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhHHHHHHHHHHhHHHHHHHHHHHhhcc
Q 023813 169 WSILLTQIINIYPAE---LLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLRLK 245 (277)
Q Consensus 169 ~~v~~~~~~~~~~~~---~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~t~~~~~~~~~~~~~~ 245 (277)
|++..|+..++.++. ...+.++...+++...+.....++. .... ++..+...++.+.+.+.++|.+|++++++.
T Consensus 159 ~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~s~l~~~l~~~al~~~ 235 (281)
T TIGR03340 159 YSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR--SMFP-YARQILPSATLGGLMIGGAYALVLWAMTRL 235 (281)
T ss_pred hhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhcc--chhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999988764443311 1222333333322222222211211 1111 223455677888889999999999999999
Q ss_pred CceeehhhhhhHHHHHHHHHHHHhCCcccC
Q 023813 246 GPVYIAIFKPLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 246 ~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~ 275 (277)
|+++++.+.+++|+++.++|++++||+++.
T Consensus 236 ~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~ 265 (281)
T TIGR03340 236 PVATVVALRNTSIVFAVVLGIWFLNERWYL 265 (281)
T ss_pred CceEEEeecccHHHHHHHHHHHHhCCCccH
Confidence 999999999999999999999999999985
No 10
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.94 E-value=2.7e-25 Score=197.19 Aligned_cols=245 Identities=10% Similarity=0.056 Sum_probs=186.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHh
Q 023813 28 TLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSS 107 (277)
Q Consensus 28 ~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~a~ 107 (277)
...|.++++--+|...++.|+.++.+.+.+.... +.+++ ++.+++|+.++...|++++.++.+.+.|++|+++++++
T Consensus 19 ~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~ 95 (302)
T TIGR00817 19 IYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSS--GLPKR-LKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTH 95 (302)
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHh--CCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 4679888654679999999999998776655211 11222 35678899999999999988899999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHhhccccccccchhh-hhhhhhheecc--CchhhHHHHHHHHHHHHHHHHHHHHHHHh--hCCh
Q 023813 108 AISNLTPAFTFTLAVLFRMEKLALRTLSTQA-KIIGTMVSISV--SNWVTGGFLLAAQCFLLSIWSILLTQIIN--IYPA 182 (277)
Q Consensus 108 ~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~-~~~g~~~~~~~--~~~~~G~~l~l~~a~~~a~~~v~~~~~~~--~~~~ 182 (277)
++.+++|+++.+++.+++|||++++++.++. ...|+.+...+ +....|+++++.++++||.|++..||..+ +.+
T Consensus 96 li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~- 174 (302)
T TIGR00817 96 TIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLD- 174 (302)
T ss_pred HHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-
Confidence 9999999999999999999999999998876 45666544332 22346999999999999999999999877 565
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCc---cccc----cch-hhHHHHHHHHHHhHHHHHHHHHHHhhccCceeehhhh
Q 023813 183 ELLVAFLYNLFAAVIAVPLCLFAEPDLS---LWRL----KPD-VALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFK 254 (277)
Q Consensus 183 ~~~~~~~~~~~g~i~~~~~~~~~~~~~~---~~~~----~~~-~~~~~l~~~gv~~t~~~~~~~~~~~~~~~~~~~s~~~ 254 (277)
+...+.|++..+++.+.+.....|++.. ++.. .+. ..+...+..+..+....+.++++++++.++++.+.+.
T Consensus 175 ~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~ 254 (302)
T TIGR00817 175 KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGN 254 (302)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHh
Confidence 6899999999999988888776553210 1100 000 1111122222222222224566899999999999999
Q ss_pred hhHHHHHHHHHHHHhCCcccCC
Q 023813 255 PLSVVIAAITGIIFLGDTLHLG 276 (277)
Q Consensus 255 ~l~pv~a~i~~~~~l~E~~~~~ 276 (277)
+++|++++++|++++||++|+.
T Consensus 255 ~l~pv~~~~~~~~~lge~lt~~ 276 (302)
T TIGR00817 255 CMKRVVVIVVSILFFGTKISPQ 276 (302)
T ss_pred hhhhhheeeeehhhcCCCCchh
Confidence 9999999999999999999863
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.92 E-value=1.4e-22 Score=183.23 Aligned_cols=246 Identities=15% Similarity=0.127 Sum_probs=188.2
Q ss_pred HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 023813 25 GLNTLFKAAASKGLS-YYVFVAYSYPLATLALLPLPLIFRNTTTVVPSF--KFSILSRIILLSFIGVLSQIFGYTGIACS 101 (277)
Q Consensus 25 ~~~~~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~l~~~ 101 (277)
......|.++++ +| |..++.+|+.++.+....+...+ .++ + ++. .++++..++..|+++...+...+.|++++
T Consensus 63 ~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~~-~~~-~-~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~ 138 (350)
T PTZ00343 63 LYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWATG-FRK-I-PRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLG 138 (350)
T ss_pred HHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHhC-CCC-C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345678888765 99 99999999999987765543321 122 2 233 34578889999999954566677999999
Q ss_pred ChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhh-hhhhhhheecc-Cc-hhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 023813 102 SPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQA-KIIGTMVSISV-SN-WVTGGFLLAAQCFLLSIWSILLTQIIN 178 (277)
Q Consensus 102 ~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~-~~~g~~~~~~~-~~-~~~G~~l~l~~a~~~a~~~v~~~~~~~ 178 (277)
+++.++++.++.|+++.+++++++|||++++++.++. ...|+.++..+ .+ ...|++++++++++||.|++..|+..+
T Consensus 139 svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~ 218 (350)
T PTZ00343 139 AVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSSLRSIFAKKTMK 218 (350)
T ss_pred cHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999887 45666665542 22 256999999999999999999999876
Q ss_pred hCC------hhHHHHHHHHHHHHHHHHHHHHhcCCCC--cccc----ccchhhHHHHHHHHHHhHHHHHHHHHH----Hh
Q 023813 179 IYP------AELLVAFLYNLFAAVIAVPLCLFAEPDL--SLWR----LKPDVALVSIVYSAFLGPSFNTIIHTW----GL 242 (277)
Q Consensus 179 ~~~------~~~~~~~~~~~~g~i~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~gv~~t~~~~~~~~~----~~ 242 (277)
+.+ ++.....++...|+++..+.....|.+. ..+. ..+...+..+++. ++.+++.|.+|+. ++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~s~l~~~l~n~~~f~~l 297 (350)
T PTZ00343 219 NKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFK-IFFSGVWYYLYNEVAFYCL 297 (350)
T ss_pred ccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 532 2355666678899998888877555321 1110 0011122344454 5578999999995 99
Q ss_pred hccCceeehhhhhhHHHHHHHHHHHHhCCcccC
Q 023813 243 RLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 243 ~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~ 275 (277)
++.++.+.+...+++|++++++|++++||++|+
T Consensus 298 ~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~ 330 (350)
T PTZ00343 298 GKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTL 330 (350)
T ss_pred hccchhHHHHHHHHHHHHHhhhhHHHhCCCCch
Confidence 999999999999999999999999999999986
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.91 E-value=5.3e-22 Score=173.82 Aligned_cols=258 Identities=22% Similarity=0.281 Sum_probs=193.7
Q ss_pred hHhHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHH
Q 023813 7 FREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFI 86 (277)
Q Consensus 7 ~~~~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 86 (277)
++..+.....+...+.|+.++...|...++..++....+.|+..+.....+.... ++... .+. .++.......+.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~-~~~~~~~~~~~~~ 78 (292)
T COG0697 3 RALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL--EPRGL-RPA-LRPWLLLLLLALL 78 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh--hcccc-ccc-ccchHHHHHHHHH
Confidence 3445567777888899999999999987544777788888999999884444322 11111 111 2223344555555
Q ss_pred H-HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHH-HHhhccccccccchhh-hhhhhhheeccCc-----hhhHHHH
Q 023813 87 G-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAV-LFRMEKLALRTLSTQA-KIIGTMVSISVSN-----WVTGGFL 158 (277)
Q Consensus 87 ~-~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~-l~~~e~~~~~~~~~i~-~~~g~~~~~~~~~-----~~~G~~l 158 (277)
+ ..++.+++.++++++++.++.+.++.|+++.+++. +++|||++++++.++. ...|+.+....++ ...|+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~ 158 (292)
T COG0697 79 GLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLL 158 (292)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHH
Confidence 5 89999999999999999999999999999999997 6779999999999865 4677777666222 2479999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCChhHHHHH-HHHHHHHHHHHHHHHhcCCCCccccccchhhHHHHHHHHHHhHHHHHHH
Q 023813 159 LAAQCFLLSIWSILLTQIINIYPAELLVAF-LYNLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIVYSAFLGPSFNTII 237 (277)
Q Consensus 159 ~l~~a~~~a~~~v~~~~~~~~~~~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~t~~~~~~ 237 (277)
++.++++|+++++..|+.. +.+ +..... ++.. +...........+.+ ...+...+..+.+.|+++++++|.+
T Consensus 159 ~l~a~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~i~~~~ 231 (292)
T COG0697 159 ALAAALLWALYTALVKRLS-RLG-PVTLALLLQLL-LALLLLLLFFLSGFG----APILSRAWLLLLYLGVFSTGLAYLL 231 (292)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHH-HHHHHHHHHHhcccc----ccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887 444 355555 4444 222222222211111 1123346888899999999999999
Q ss_pred HHHHhhccCceeehhhhhhHHHHHHHHHHHHhCCcccC
Q 023813 238 HTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 238 ~~~~~~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~ 275 (277)
|++++++.+++.++.+.+++|+++.+++++++||+++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~ 269 (292)
T COG0697 232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSP 269 (292)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 99999999999999999999999999999999999975
No 13
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.85 E-value=9.7e-19 Score=155.36 Aligned_cols=261 Identities=16% Similarity=0.151 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHH
Q 023813 11 LLLSATVAVECTTVGLNTLFKAAASKGLS-YYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVL 89 (277)
Q Consensus 11 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 89 (277)
+..+..=..+++-.++...+....+.+.+ |..-.+.-+..-.++..+....|+++++. .+..+++++++++.+++-..
T Consensus 13 ~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~-~~~~~~~~w~y~lla~~Dv~ 91 (334)
T PF06027_consen 13 IVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKW-LKVLKRPWWKYFLLALLDVE 91 (334)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccc-hhhcchhHHHHHHHHHHHHH
Confidence 33333333444555666666655444443 44444554444444555555444122222 23335678888889999999
Q ss_pred HHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhh-hhhhhhheec-----c------CchhhHHH
Q 023813 90 SQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQA-KIIGTMVSIS-----V------SNWVTGGF 157 (277)
Q Consensus 90 ~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~-~~~g~~~~~~-----~------~~~~~G~~ 157 (277)
++++...|++||+.+.++++..+.-+++.+++++++|||.++.++.|+. ...|+++... + ++...||+
T Consensus 92 aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDl 171 (334)
T PF06027_consen 92 ANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDL 171 (334)
T ss_pred HHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHH
Confidence 9999999999999999999999999999999999999999999998876 4555454443 1 23468999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhcCCCC-ccccccchhhHHHHHHHHHHhHHHHHH
Q 023813 158 LLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDL-SLWRLKPDVALVSIVYSAFLGPSFNTI 236 (277)
Q Consensus 158 l~l~~a~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~gv~~t~~~~~ 236 (277)
+++.|+++||++++..++..++.| ..+...+..++|.++..+.....|.+. ...+..+ +.+...+ ...++...-|.
T Consensus 172 l~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~-~~~~~~v-~~~~~lf~~y~ 248 (334)
T PF06027_consen 172 LALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESIHWTS-QVIGLLV-GYALCLFLFYS 248 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccCCCh-hhHHHHH-HHHHHHHHHHH
Confidence 999999999999999999999887 588888899999999988888777642 2222211 2233222 22335667777
Q ss_pred HHHHHhhccCceeehhhhhhHHHHHHHHHHHHhCCcccC
Q 023813 237 IHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 237 ~~~~~~~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~ 275 (277)
+....++..+|+..++-..+..+++++++++++||++++
T Consensus 249 l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ 287 (334)
T PF06027_consen 249 LVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSW 287 (334)
T ss_pred HHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccH
Confidence 889999999999999999999999999999999999886
No 14
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.85 E-value=1.3e-19 Score=150.71 Aligned_cols=248 Identities=17% Similarity=0.064 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHH
Q 023813 12 LLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQ 91 (277)
Q Consensus 12 ~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 91 (277)
++..++.++..--....+.|..+.. ++|...+++|..++++++..+. | ..+ ++.+++|+..+..-|+.-+.-+
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~--R---Pwr-~r~~~~~~~~~~~yGvsLg~MN 85 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALF--R---PWR-RRLSKPQRLALLAYGVSLGGMN 85 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHh--h---HHH-hccChhhhHHHHHHHHHHHHHH
Confidence 5777777777666678889988765 9999999999999999988874 2 222 3567888999999999888888
Q ss_pred HHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhhhhhhhhheec-c----CchhhHHHHHHHHHHHH
Q 023813 92 IFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSIS-V----SNWVTGGFLLAAQCFLL 166 (277)
Q Consensus 92 ~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~~~g~~~~~~-~----~~~~~G~~l~l~~a~~~ 166 (277)
.+||.+++.+|-+.+..+-++-|+.++.++. ++.+-..|.++ .+.|+.+... + .-...|..+.+.+..||
T Consensus 86 l~FY~si~riPlGiAVAiEF~GPL~vA~~~s----Rr~~d~vwvaL-AvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~W 160 (292)
T COG5006 86 LLFYLSIERIPLGIAVAIEFTGPLAVALLSS----RRLRDFVWVAL-AVLGIWLLLPLGQSVWSLDPVGVALALGAGACW 160 (292)
T ss_pred HHHHHHHHhccchhhhhhhhccHHHHHHHhc----cchhhHHHHHH-HHHHHHhheeccCCcCcCCHHHHHHHHHHhHHH
Confidence 9999999999999999999999998887664 22222223332 2344444333 1 22358999999999999
Q ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhHHHHHHHHHHhHHHHHHHHHHHhhccC
Q 023813 167 SIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKG 246 (277)
Q Consensus 167 a~~~v~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~t~~~~~~~~~~~~~~~ 246 (277)
++|.+..+|..+..+ ...-+...+.+++++..++.....++ .. .++.-...-+..|+++|.+.|.+=..+++|.+
T Consensus 161 a~YIv~G~r~g~~~~-g~~g~a~gm~vAaviv~Pig~~~ag~--~l--~~p~ll~laLgvavlSSalPYsLEmiAL~rlp 235 (292)
T COG5006 161 ALYIVLGQRAGRAEH-GTAGVAVGMLVAALIVLPIGAAQAGP--AL--FSPSLLPLALGVAVLSSALPYSLEMIALRRLP 235 (292)
T ss_pred HHHHHHcchhcccCC-CchHHHHHHHHHHHHHhhhhhhhcch--hh--cChHHHHHHHHHHHHhcccchHHHHHHHhhCC
Confidence 999999999876555 36778889999999988887743321 11 12233555678899999999999999999999
Q ss_pred ceeehhhhhhHHHHHHHHHHHHhCCcccCC
Q 023813 247 PVYIAIFKPLSVVIAAITGIIFLGDTLHLG 276 (277)
Q Consensus 247 ~~~~s~~~~l~pv~a~i~~~~~l~E~~~~~ 276 (277)
....+....+||.++.+.|++++||++|+.
T Consensus 236 ~~~F~~LlSLePa~aAl~G~i~L~e~ls~~ 265 (292)
T COG5006 236 ARTFGTLLSLEPALAALSGLIFLGETLTLI 265 (292)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCCCCHH
Confidence 999999999999999999999999999863
No 15
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.83 E-value=2.4e-18 Score=146.53 Aligned_cols=261 Identities=11% Similarity=0.070 Sum_probs=198.4
Q ss_pred hHhHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCCchHHHHHHHHHHHH
Q 023813 7 FREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTV-VPSFKFSILSRIILLSF 85 (277)
Q Consensus 7 ~~~~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~ 85 (277)
++..|+++..+.+.++||..+...|.. ++ +|+.++.+.|..-+...+.......|+++.. +..-+.|.+..+...+.
T Consensus 3 ~~~~~Gil~~l~Ay~lwG~lp~y~kll-~~-~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~ 80 (293)
T COG2962 3 KDSRKGILLALLAYLLWGLLPLYFKLL-EP-LPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTAL 80 (293)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHH-cc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHH
Confidence 445689999999999999999999985 54 9999999999999988887665544122211 11113455666777777
Q ss_pred HHHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhhh-hhhhhheec-cCchhhHHHHHHHHH
Q 023813 86 IGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAK-IIGTMVSIS-VSNWVTGGFLLAAQC 163 (277)
Q Consensus 86 ~~~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~-~~g~~~~~~-~~~~~~G~~l~l~~a 163 (277)
+.+.++..|.|+.++-..-++|.=.+..|++..+++.+++|||+++-||.++.. .+|+..-.. .++.. ...+.=+
T Consensus 81 li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lp---wval~la 157 (293)
T COG2962 81 LIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLP---WVALALA 157 (293)
T ss_pred HHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCc---HHHHHHH
Confidence 779999999999999999999999999999999999999999999999998864 466555443 22221 3455557
Q ss_pred HHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhHHHHHHHHHHhHHHHHHHHHHHhh
Q 023813 164 FLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLR 243 (277)
Q Consensus 164 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~t~~~~~~~~~~~~ 243 (277)
+.|+.|...-|+. + .++ .+-....++.-.+...++....+.+++..+..++..+..++..|+ .|+++-.+|..+-|
T Consensus 158 ~sf~~Ygl~RK~~-~-v~a-~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~-vTavpL~lf~~aa~ 233 (293)
T COG2962 158 LSFGLYGLLRKKL-K-VDA-LTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGL-VTAVPLLLFAAAAK 233 (293)
T ss_pred HHHHHHHHHHHhc-C-Cch-HHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhH-HHHHHHHHHHHHHh
Confidence 8899999985554 3 332 555556666666666666655543332122123445777778888 77999999999999
Q ss_pred ccCceeehhhhhhHHHHHHHHHHHHhCCcccCC
Q 023813 244 LKGPVYIAIFKPLSVVIAAITGIIFLGDTLHLG 276 (277)
Q Consensus 244 ~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~~ 276 (277)
|.+-+..+.+.|.+|..-.+++++++||+++..
T Consensus 234 ~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~ 266 (293)
T COG2962 234 RLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD 266 (293)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 999999999999999999999999999999853
No 16
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.82 E-value=3.8e-18 Score=150.51 Aligned_cols=244 Identities=16% Similarity=0.112 Sum_probs=178.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCch-HHHHHHHHHHHHHHHHHH
Q 023813 13 LSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFK-FSILSRIILLSFIGVLSQ 91 (277)
Q Consensus 13 ~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~ 91 (277)
++..++++++||++.+..|... +.++.++. |..++.+++..+.... +++ +.+ ++.+..-+..|++-+.++
T Consensus 3 ~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~-~~~----~~~~~~~~~~g~l~G~~w~ig~ 73 (290)
T TIGR00776 3 ILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIF-VLP----EFWALSIFLVGLLSGAFWALGQ 73 (290)
T ss_pred hHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHH-hCC----cccccHHHHHHHHHHHHHHhhh
Confidence 5678889999999999999863 68888886 8888888887766554 211 112 233333444455557888
Q ss_pred HHHHHhccccChhhHhhhhh-hhHHHHHHHHHHHhhccccccc----cchhh-hhhhhhheec---c-------CchhhH
Q 023813 92 IFGYTGIACSSPTLSSAISN-LTPAFTFTLAVLFRMEKLALRT----LSTQA-KIIGTMVSIS---V-------SNWVTG 155 (277)
Q Consensus 92 ~~~~~~l~~~~~~~a~~l~~-~~P~~~~~l~~l~~~e~~~~~~----~~~i~-~~~g~~~~~~---~-------~~~~~G 155 (277)
.+++.++++++.+.+..+.+ +.|++.++.+.+++|||.++++ ..++. ..+|+.+... + .+...|
T Consensus 74 ~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~G 153 (290)
T TIGR00776 74 INQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKG 153 (290)
T ss_pred hhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhH
Confidence 99999999999999999888 8888999999999999999987 55554 3355443322 1 222589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHH---HHHHHHHHHHHHHhcCCCCccccccchhhHHHHHHHHHHhHH
Q 023813 156 GFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLY---NLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIVYSAFLGPS 232 (277)
Q Consensus 156 ~~l~l~~a~~~a~~~v~~~~~~~~~~~~~~~~~~~---~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~t~ 232 (277)
..+.+.++++|+.|.+..|+. +++ |...++.+ ++.++........ ..+ .+ .+...+..++ .|++ +.
T Consensus 154 i~~~l~sg~~y~~~~~~~~~~--~~~-~~~~~~~~~~g~~~~~~~~~~~~~-~~~---~~--~~~~~~~~~~-~Gi~-~~ 222 (290)
T TIGR00776 154 ILLLLMSTIGYLVYVVVAKAF--GVD-GLSVLLPQAIGMVIGGIIFNLGHI-LAK---PL--KKYAILLNIL-PGLM-WG 222 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--CCC-cceehhHHHHHHHHHHHHHHHHHh-ccc---ch--HHHHHHHHHH-HHHH-HH
Confidence 999999999999999999875 344 57774443 4444443222211 011 11 1222344444 8887 79
Q ss_pred HHHHHHHHHhh-ccCceeehhhhhhHHHHHHHHHHHHhCCcccCC
Q 023813 233 FNTIIHTWGLR-LKGPVYIAIFKPLSVVIAAITGIIFLGDTLHLG 276 (277)
Q Consensus 233 ~~~~~~~~~~~-~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~~ 276 (277)
+++.+|..+.+ +.++++++..++.||+.+.+.+++++||+.++-
T Consensus 223 ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~ 267 (290)
T TIGR00776 223 IGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR 267 (290)
T ss_pred HHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 99999999999 999999999999999999999999999998753
No 17
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.62 E-value=2.3e-16 Score=132.33 Aligned_cols=252 Identities=17% Similarity=0.160 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHH
Q 023813 11 LLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLS 90 (277)
Q Consensus 11 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 90 (277)
++...+.+. .++.+..+..+..++ .+|.+..-.|++.-.++..|-...+ +.....|+-.| ..++.+|+.|..+
T Consensus 38 ~gl~l~~vs-~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~-~~~v~gp~g~R---~~LiLRg~mG~tg 110 (346)
T KOG4510|consen 38 LGLLLLTVS-YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYY-MQPVIGPEGKR---KWLILRGFMGFTG 110 (346)
T ss_pred cCceehhhH-HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEE-eeeeecCCCcE---EEEEeehhhhhhH
Confidence 344444444 677777777777653 6999999999776666655544332 11111122112 2456689999888
Q ss_pred HHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhh-hhhhhhheec------------c----Cchh
Q 023813 91 QIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQA-KIIGTMVSIS------------V----SNWV 153 (277)
Q Consensus 91 ~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~-~~~g~~~~~~------------~----~~~~ 153 (277)
....|++++|.+-+.|+++....|.++.++++.++||+.++-..++.. .+.|+++.+- + +...
T Consensus 111 vmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~ 190 (346)
T KOG4510|consen 111 VMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDI 190 (346)
T ss_pred HHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccC
Confidence 889999999999999999999999999999999999999998777654 5677666553 0 1224
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccc-chhhHHHHHHHHHHhHH
Q 023813 154 TGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLK-PDVALVSIVYSAFLGPS 232 (277)
Q Consensus 154 ~G~~l~l~~a~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gv~~t~ 232 (277)
.|-+..+.+++.-|--.++.|+..|+.+. .....|..+++.+...+.....+ .++.+ ...+|+..+.+|+++ .
T Consensus 191 ~gt~aai~s~lf~asvyIilR~iGk~~h~-~msvsyf~~i~lV~s~I~~~~ig----~~~lP~cgkdr~l~~~lGvfg-f 264 (346)
T KOG4510|consen 191 PGTVAAISSVLFGASVYIILRYIGKNAHA-IMSVSYFSLITLVVSLIGCASIG----AVQLPHCGKDRWLFVNLGVFG-F 264 (346)
T ss_pred CchHHHHHhHhhhhhHHHHHHHhhccccE-EEEehHHHHHHHHHHHHHHhhcc----ceecCccccceEEEEEehhhh-h
Confidence 57777888887777777777887777653 44455667777776666554332 23332 334677788899955 8
Q ss_pred HHHHHHHHHhhccCceeehhhhhhHHHHHHHHHHHHhCCcccC
Q 023813 233 FNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~ 275 (277)
+++.+...++|+-.+..+++..+.+.++|.++.++++||.+|+
T Consensus 265 igQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ 307 (346)
T KOG4510|consen 265 IGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTI 307 (346)
T ss_pred HHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChH
Confidence 9999999999999999999999999999999999999999985
No 18
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.53 E-value=6.4e-12 Score=111.65 Aligned_cols=230 Identities=15% Similarity=0.170 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhhhhhhhHHHHHH
Q 023813 40 YYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFT 119 (277)
Q Consensus 40 p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~ 119 (277)
|..+++..+....+.-.+..... +++. .+++.+.++...+++..++..+-+.+++|+|.+.-.++-...|+.+++
T Consensus 32 ~~~lt~~q~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi 106 (303)
T PF08449_consen 32 PLFLTFVQFAFNALFSFILLSLF-KFPK----SRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMI 106 (303)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhc-cccC----CCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHH
Confidence 88999999999888777665543 2111 223344566677888888999999999999999999999999999999
Q ss_pred HHHHHhhccccccccchhhhh-hhhhheec-c-------C----chhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-hhHH
Q 023813 120 LAVLFRMEKLALRTLSTQAKI-IGTMVSIS-V-------S----NWVTGGFLLAAQCFLLSIWSILLTQIINIYP-AELL 185 (277)
Q Consensus 120 l~~l~~~e~~~~~~~~~i~~~-~g~~~~~~-~-------~----~~~~G~~l~l~~a~~~a~~~v~~~~~~~~~~-~~~~ 185 (277)
++.+++|+|.+++++.++... +|+.+.-. + + +...|+.+.+.+.++.+...+.++|..++++ ++.+
T Consensus 107 ~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~ 186 (303)
T PF08449_consen 107 LGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWE 186 (303)
T ss_pred HHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 999999999999999987754 55544433 0 1 1124999999999999999999999976644 4578
Q ss_pred HHHHHHHHHHHHHHHHHHh--cCCCCc--cccccchhhHHHHHHHHHHhHHHHHHHHHHHhhccCceeehhhhhhHHHHH
Q 023813 186 VAFLYNLFAAVIAVPLCLF--AEPDLS--LWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIA 261 (277)
Q Consensus 186 ~~~~~~~~g~i~~~~~~~~--~~~~~~--~~~~~~~~~~~~l~~~gv~~t~~~~~~~~~~~~~~~~~~~s~~~~l~pv~a 261 (277)
..+|...++.+...+.... .++..+ .+...+++.+..++...+ ...++....++..++.|+...+....+--+.+
T Consensus 187 ~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~-~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~s 265 (303)
T PF08449_consen 187 LMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL-TGALGQFFIFYLIKKFSALTTTIVTTLRKFLS 265 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHH
Confidence 8999999999888877776 322111 111223334555555555 55777788888899999999999999999999
Q ss_pred HHHHHHHhCCcccC
Q 023813 262 AITGIIFLGDTLHL 275 (277)
Q Consensus 262 ~i~~~~~l~E~~~~ 275 (277)
++++++++||++++
T Consensus 266 illS~~~f~~~~~~ 279 (303)
T PF08449_consen 266 ILLSVIIFGHPLSP 279 (303)
T ss_pred HHHHHHhcCCcCCh
Confidence 99999999999886
No 19
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.51 E-value=1.6e-13 Score=103.02 Aligned_cols=132 Identities=15% Similarity=0.105 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHH
Q 023813 12 LLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQ 91 (277)
Q Consensus 12 ~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 91 (277)
..++.++++++||...++.|+..+ ++||..-++.|.......+..+.... ++.+....++.|.+..++..|+.+++.+
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~-g~~~~~~~~~~k~~lflilSGla~glsw 81 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVT-GNWQAGGEIGPKSWLFLILSGLAGGLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhc-CceecccccCcceehhhhHHHHHHHHHH
Confidence 467889999999999999999986 59999999999999999988887765 3333212367888999999998889999
Q ss_pred HHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhhhh-hhhhh
Q 023813 92 IFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKI-IGTMV 145 (277)
Q Consensus 92 ~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~~-~g~~~ 145 (277)
.+||.+++.-.++...-+-.+.|.++.++++++++||++.++|.|+..+ +|+++
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gail 136 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAIL 136 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeee
Confidence 9999999999999999999999999999999999999999999988754 55543
No 20
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.48 E-value=1.2e-13 Score=105.84 Aligned_cols=120 Identities=21% Similarity=0.294 Sum_probs=101.0
Q ss_pred HHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHH-HHHHHHHHHhcc
Q 023813 21 CTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VLSQIFGYTGIA 99 (277)
Q Consensus 21 ~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~ 99 (277)
++||...++.|...++ +||.+.+++|+..+.+ +.+..... ++++. .+.+.+++......|.++ ..++.+++.+++
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLIL-GRKPF-KNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhh-ccccc-cCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 4799999999998765 9999999999999997 55555554 33332 356678888888889987 999999999999
Q ss_pred ccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhhh-hhhhh
Q 023813 100 CSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAK-IIGTM 144 (277)
Q Consensus 100 ~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~-~~g~~ 144 (277)
+++++.++.+.++.|+++.+++++++||+++++++.+... ..|+.
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~ 122 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVV 122 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998887654 34443
No 21
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.38 E-value=6.3e-12 Score=110.49 Aligned_cols=188 Identities=17% Similarity=0.281 Sum_probs=144.9
Q ss_pred HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhhhhhhhhheec-c----------CchhhHH
Q 023813 88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSIS-V----------SNWVTGG 156 (277)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~~~g~~~~~~-~----------~~~~~G~ 156 (277)
..+++.+..++++|+++..+++.++..+|+..++.++..||+++.+..++..-+|+++.+. + .+...|+
T Consensus 170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~llG~ 249 (416)
T KOG2765|consen 170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLLGN 249 (416)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhHHH
Confidence 8899999999999999999999999999999999999999999997777764444444443 1 1236899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCC---hhHHHHHHHHHHHHHHHHHHHHhcCC-CCccccccchhhHHHHHHHHHHhHH
Q 023813 157 FLLAAQCFLLSIWSILLTQIINIYP---AELLVAFLYNLFAAVIAVPLCLFAEP-DLSLWRLKPDVALVSIVYSAFLGPS 232 (277)
Q Consensus 157 ~l~l~~a~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gv~~t~ 232 (277)
++.+.+|+.||+|.++.||...+++ +-.....+..++..+++++...+... ..+.++.++..+...++..+.++|.
T Consensus 250 llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtv 329 (416)
T KOG2765|consen 250 LLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTV 329 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHH
Confidence 9999999999999999999876653 21222334444445555544433211 1123455555566677888999999
Q ss_pred HHHHHHHHHhhccCceeehhhhhhHHHHHHHHHHHHhCCcccC
Q 023813 233 FNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~ 275 (277)
++-++|.+++--.+|..+.+-..++.+.|++.+.++=|.++++
T Consensus 330 vSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~ 372 (416)
T KOG2765|consen 330 VSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSA 372 (416)
T ss_pred HHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCH
Confidence 9999999999999999999999999999999998887777764
No 22
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.29 E-value=6.3e-10 Score=95.59 Aligned_cols=201 Identities=12% Similarity=0.173 Sum_probs=149.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhhh-hhhhhheec---
Q 023813 73 KFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAK-IIGTMVSIS--- 148 (277)
Q Consensus 73 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~-~~g~~~~~~--- 148 (277)
++||..++.+.+++..+.+.+.+.++++.+++.-.++.++-.+++++++++++|+|++++||.++.. ..|+.+.-.
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 5788899999999999999999999999999999999999999999999999999999999999874 466555443
Q ss_pred -c---------------CchhhHHHHHHHHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHHHHHHHhcCCCC-c
Q 023813 149 -V---------------SNWVTGGFLLAAQCFLLSIWSILLTQIINIYPAE-LLVAFLYNLFAAVIAVPLCLFAEPDL-S 210 (277)
Q Consensus 149 -~---------------~~~~~G~~l~l~~a~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~~g~i~~~~~~~~~~~~~-~ 210 (277)
+ .+...|.++.+.++++-+...+..+|..|+.+.+ .........+|.+...+.....+.+. .
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~ 172 (244)
T PF04142_consen 93 QSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAIS 172 (244)
T ss_pred cccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 1 0135799999999999999999999999885422 44454555666666555544433211 1
Q ss_pred cccccchhhHHHHHHHHHHhHHHHHHHHHHHhhccCceeehhhhhhHHHHHHHHHHHHhCCcccC
Q 023813 211 LWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 211 ~~~~~~~~~~~~l~~~gv~~t~~~~~~~~~~~~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~ 275 (277)
+-.. .+.+-...+..++..+++=.+....+|+.|...=+......-+.+.+.++.++|+++|.
T Consensus 173 ~~g~--f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~ 235 (244)
T PF04142_consen 173 ESGF--FHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSL 235 (244)
T ss_pred cCCc--hhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 1000 01111112223334455556667778888888778888889999999999999999985
No 23
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.28 E-value=9.2e-11 Score=101.57 Aligned_cols=128 Identities=20% Similarity=0.220 Sum_probs=106.1
Q ss_pred hHhHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHH
Q 023813 7 FREALLLSATVAVECTTVGLNTLFKAAASKGLSY--YVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLS 84 (277)
Q Consensus 7 ~~~~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p--~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 84 (277)
+.+.++..+.+.++++|+...+..|...+ +.+| .....+|+.++.+++.++.... +++ ...+.+++......|
T Consensus 124 ~~~~~G~~~~l~a~~~~a~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~---~~~~~~~~~~~~~~~ 198 (260)
T TIGR00950 124 SINPAGLLLGLGSGISFALGTVLYKRLVK-KEGPELLQFTGWVLLLGALLLLPFAWFL-GPN---PQALSLQWGALLYLG 198 (260)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHhh-cCCchHHHHHHHHHHHHHHHHHHHHHhc-CCC---CCcchHHHHHHHHHH
Confidence 34467899999999999999999999864 3664 4556678999999988887654 222 223567777788889
Q ss_pred HHH-HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhhh
Q 023813 85 FIG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAK 139 (277)
Q Consensus 85 ~~~-~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~ 139 (277)
+++ .+++.++++++++.+++.++.+.++.|+++.+++++++||+++++++.|...
T Consensus 199 ~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~l 254 (260)
T TIGR00950 199 LIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGAL 254 (260)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 888 8999999999999999999999999999999999999999999997766543
No 24
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.24 E-value=2.7e-11 Score=92.63 Aligned_cols=108 Identities=21% Similarity=0.370 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhHHHHHHHHHHhHHHHHHHHHHHhh
Q 023813 164 FLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLR 243 (277)
Q Consensus 164 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~t~~~~~~~~~~~~ 243 (277)
++||.+.+..|+..++.| |...+.+....+++ ..+.....+... ....+.+.+....+.+.+++.+++.+++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 478999999999999877 69999999999998 666655544321 12223345777888899889999999999999
Q ss_pred ccCceeehhhhhhHHHHHHHHHHHHhCCcccC
Q 023813 244 LKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 244 ~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~ 275 (277)
+.++++++.+.+++|+++.+++++++||+++.
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~ 108 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSW 108 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999985
No 25
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.14 E-value=1e-09 Score=82.65 Aligned_cols=117 Identities=12% Similarity=0.120 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhHHHHHHHHHHhHHHHH
Q 023813 156 GFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIVYSAFLGPSFNT 235 (277)
Q Consensus 156 ~~l~l~~a~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~t~~~~ 235 (277)
.++.+.+++.++...+..|--.|+.+ |...+........+.+.......+. .+.-...++..|..++..|+ +++++.
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~-~~~~~~~~~k~~lflilSGl-a~glsw 81 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGN-WQAGGEIGPKSWLFLILSGL-AGGLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCc-eecccccCcceehhhhHHHH-HHHHHH
Confidence 57899999999999999888888766 5777888888777777777766542 11111125567899999996 999999
Q ss_pred HHHHHHhhccCceeehhhhhhHHHHHHHHHHHHhCCcccC
Q 023813 236 IIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 236 ~~~~~~~~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~ 275 (277)
.+|++++|+.+++++.+..-..|++++++|++++||++|.
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~ 121 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSL 121 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCH
Confidence 9999999999999999999999999999999999999985
No 26
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.13 E-value=8.9e-11 Score=89.05 Aligned_cols=102 Identities=25% Similarity=0.354 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHH-HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHH
Q 023813 45 AYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVL 123 (277)
Q Consensus 45 ~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l 123 (277)
.+|+..+.+.+..+...+++.+...+..+++++..++..|.++ ..++.++++|+++.+ +..+.+.+++|+++.+++.+
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 6899999999998887751211111233456667777788888 599999999999999 58889999999999999999
Q ss_pred Hhhccccccccchhh-hhhhhhhee
Q 023813 124 FRMEKLALRTLSTQA-KIIGTMVSI 147 (277)
Q Consensus 124 ~~~e~~~~~~~~~i~-~~~g~~~~~ 147 (277)
++|||++++++.++. ..+|+++..
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~ 105 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIA 105 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999998876 446655443
No 27
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.12 E-value=1.2e-09 Score=96.47 Aligned_cols=245 Identities=11% Similarity=0.113 Sum_probs=174.0
Q ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhccccChh
Q 023813 27 NTLFKAAAS--KGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPT 104 (277)
Q Consensus 27 ~~~~k~~~~--~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~ 104 (277)
....|..++ +.--|..++..++..+.+.+......+ .++.. +..++..+..++-.|++.++...+-..++++.+++
T Consensus 33 ~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~-~~~~~-~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~Vs 110 (316)
T KOG1441|consen 33 IILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLK-LVPPS-KISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVS 110 (316)
T ss_pred EEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhc-CCCCC-ccccccchHHHHHHHHHHHHHHHhcchhhhccchh
Confidence 345577666 434677888888888877766665443 22221 11133456677778998899999999999999999
Q ss_pred hHhhhhhhhHHHHHHHHHHHhhccccccccchhh-hhhhhhheecc-Cc-hhhHHHHHHHHHHHHHHHHHHHHHHHh--h
Q 023813 105 LSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQA-KIIGTMVSISV-SN-WVTGGFLLAAQCFLLSIWSILLTQIIN--I 179 (277)
Q Consensus 105 ~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~-~~~g~~~~~~~-~~-~~~G~~l~l~~a~~~a~~~v~~~~~~~--~ 179 (277)
-...+-.++|+++.++++++.+|+.+++.+..+. ...|+.++-.+ .+ ...|...++.+.+..+..++..|+..+ +
T Consensus 111 F~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~ 190 (316)
T KOG1441|consen 111 FYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFALRNILSKKLLTSKG 190 (316)
T ss_pred HHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999999999999999999999999999988766 44666655553 32 358999999999999999999999874 2
Q ss_pred --CChhHHHHHHHHHHHHHHHH-HHHHhcCCCCc-cccc-cchhhHHHHHHHHHHhHHHHHHHHHHHhhccCceeehhhh
Q 023813 180 --YPAELLVAFLYNLFAAVIAV-PLCLFAEPDLS-LWRL-KPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFK 254 (277)
Q Consensus 180 --~~~~~~~~~~~~~~g~i~~~-~~~~~~~~~~~-~~~~-~~~~~~~~l~~~gv~~t~~~~~~~~~~~~~~~~~~~s~~~ 254 (277)
. ++.....++.-++.+.+. |.....|++.. .+.. .+.......++..+ ....-....+..+.|.+|.+-++.+
T Consensus 191 ~~~-~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv-~~f~~Nls~f~~ig~tSalT~~V~g 268 (316)
T KOG1441|consen 191 ESL-NSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNSV-LAFLLNLSAFLVIGRTSALTYSVAG 268 (316)
T ss_pred ccc-CchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHHH-HHHHHHHHHHHHHcccCchhhhhhc
Confidence 3 358888888888888777 66665554321 0011 11112222222322 1122223456777899999999999
Q ss_pred hhHHHHHHHHHHHHhCCcccC
Q 023813 255 PLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 255 ~l~pv~a~i~~~~~l~E~~~~ 275 (277)
.+--.+.+..|+++++|+.|+
T Consensus 269 ~~K~~~vi~~s~~iF~~pvt~ 289 (316)
T KOG1441|consen 269 HMKRIVVIVVSWLIFGNPVTF 289 (316)
T ss_pred cceEEEEEEeEeeeecCCCch
Confidence 888888899999999997764
No 28
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.04 E-value=2.7e-07 Score=81.44 Aligned_cols=259 Identities=11% Similarity=0.133 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHHHHHHhhccC---CCCCC------chHHHHH
Q 023813 11 LLLSATVAVECTTVGLNTLFKAAASKG---LSYYVFVAYSYPLATLALLPLPLIFRNTT---TVVPS------FKFSILS 78 (277)
Q Consensus 11 ~~~~~ll~~~~~wg~~~~~~k~~~~~~---~~p~~~~~~R~~~a~l~l~~~~~~~~~~~---~~~~~------~~~~~~~ 78 (277)
..++.++...+.++......|..-..+ ..|...++.--.+-.++.....+.. .|+ +..+. -.++|..
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~-~~~~~~~~~~~l~~~i~~~~~~~l 93 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFE-ERKYAKKSLKSLSKEILAAPRETL 93 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHH-hhHHhhhhhhhcCHHHHhChHHHH
Confidence 446777778889999999999875555 6788888888877777776666554 211 11011 1355788
Q ss_pred HHHHHHHHHHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhh-hhhhhhheec---------
Q 023813 79 RIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQA-KIIGTMVSIS--------- 148 (277)
Q Consensus 79 ~~~~~g~~~~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~-~~~g~~~~~~--------- 148 (277)
+..+.+++.++.+-..|.++.+.++++-.+..++--+.|+++..+++|+|.+++||.++. ...|+.+.-.
T Consensus 94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~ 173 (345)
T KOG2234|consen 94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAK 173 (345)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence 888889999888889999999999999999999999999999999999999999999987 4577776652
Q ss_pred ----cCchhhHHHHHHHHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHHHHHHHhcCCC-C--cc-ccccchhh
Q 023813 149 ----VSNWVTGGFLLAAQCFLLSIWSILLTQIINIYPAE-LLVAFLYNLFAAVIAVPLCLFAEPD-L--SL-WRLKPDVA 219 (277)
Q Consensus 149 ----~~~~~~G~~l~l~~a~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~~g~i~~~~~~~~~~~~-~--~~-~~~~~~~~ 219 (277)
..+...|...++.++++-+.-.++.++..|+.+.+ +..+.-...+|.+...+.....+.. . .+ ++-.+...
T Consensus 174 ~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~v 253 (345)
T KOG2234|consen 174 SESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIV 253 (345)
T ss_pred CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHH
Confidence 12346899999999999999999999998874432 3333333444555444444332211 1 11 11111223
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhccCceeehhhhhhHHHHHHHHHHHHhCCcccC
Q 023813 220 LVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 220 ~~~l~~~gv~~t~~~~~~~~~~~~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~ 275 (277)
|..++..++ +=.+-..-+|+.|...=+-...+..+++.+.++.++|-++|.
T Consensus 254 w~vVl~~a~-----gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~ 304 (345)
T KOG2234|consen 254 WLVVLLNAV-----GGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTL 304 (345)
T ss_pred HHHHHHHhc-----cchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchH
Confidence 444444444 445555556666666656666678888888998888887764
No 29
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.02 E-value=1.1e-09 Score=91.95 Aligned_cols=222 Identities=18% Similarity=0.157 Sum_probs=161.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhhhhhhhHHHHH
Q 023813 39 SYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTF 118 (277)
Q Consensus 39 ~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~ 118 (277)
.|..-.|.-+.+=+++-.++..+| |+. .+.. |.+++++++...=++++...+.|||+-....++---.-..+.
T Consensus 47 ~Pt~QtFl~Y~LLalVY~~~~~fR--~~~--~~~~---~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~ 119 (336)
T KOG2766|consen 47 APTSQTFLNYVLLALVYGPIMLFR--RKY--IKAK---WRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVL 119 (336)
T ss_pred CccHHHHHHHHHHHHHHhhHHHhh--hHH--HHHH---HHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHH
Confidence 466778888888888889988876 222 1222 334777788776677788899999998888887665555778
Q ss_pred HHHHHHhhccccccccchhh-hhhhhhheec----------cCchhhHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHH
Q 023813 119 TLAVLFRMEKLALRTLSTQA-KIIGTMVSIS----------VSNWVTGGFLLAAQCFLLSIWSILLTQIINIYPAELLVA 187 (277)
Q Consensus 119 ~l~~l~~~e~~~~~~~~~i~-~~~g~~~~~~----------~~~~~~G~~l~l~~a~~~a~~~v~~~~~~~~~~~~~~~~ 187 (277)
+++++++|.|.++.++.|+. ++.|+++.+. +.+-..||++++.++.+||+.++..+.+.|+.|. .+..
T Consensus 120 ~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d~-~elm 198 (336)
T KOG2766|consen 120 VLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNADR-VELM 198 (336)
T ss_pred HHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHHHHHhcCcH-HHHH
Confidence 99999999999999777764 5666665554 1234589999999999999999999999998874 8888
Q ss_pred HHHHHHHHHHHHHHHHhcCC-CCccccccchhhHHHHHHHH-HHhHHHHHHHHHHHhhccCceeehhhhhhHHHHHHHHH
Q 023813 188 FLYNLFAAVIAVPLCLFAEP-DLSLWRLKPDVALVSIVYSA-FLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITG 265 (277)
Q Consensus 188 ~~~~~~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g-v~~t~~~~~~~~~~~~~~~~~~~s~~~~l~pv~a~i~~ 265 (277)
....++|+++..+- .+++. +....+ ++++. ..|++ .+...+-|.+....+|..+++..++-......++.++
T Consensus 199 ~~lgLfGaIIsaIQ-~i~~~~~~~tl~--w~~~i--~~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i- 272 (336)
T KOG2766|consen 199 GFLGLFGAIISAIQ-FIFERHHVSTLH--WDSAI--FLYLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI- 272 (336)
T ss_pred HHHHHHHHHHHHHH-HhhhccceeeEe--ehHHH--HHHHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH-
Confidence 89999999998888 44443 222222 22222 22232 2233445555666778999999999999999999888
Q ss_pred HHHhCCcccC
Q 023813 266 IIFLGDTLHL 275 (277)
Q Consensus 266 ~~~l~E~~~~ 275 (277)
-.+|-+.+|
T Consensus 273 -~~FgYhv~w 281 (336)
T KOG2766|consen 273 -RTFGYHVDW 281 (336)
T ss_pred -HHHhcchhh
Confidence 556655554
No 30
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.91 E-value=3.3e-08 Score=87.40 Aligned_cols=123 Identities=11% Similarity=0.061 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHH-H
Q 023813 10 ALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-V 88 (277)
Q Consensus 10 ~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~ 88 (277)
..+.+..+.++++|+...+..|... ++.+|...... ..++++++.++.... .. . ...+...+...+..|++. .
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~-~~~~~~~~~~~-~~~~~~~l~~~~~~~-~~--~-~~~~~~~~~~~l~lgv~~t~ 220 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAG-AEHGPATVAIG-SLIAALIFVPIGALQ-AG--E-ALWHWSILPLGLAVAILSTA 220 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh-ccCCchHHHHH-HHHHHHHHHHHHHHc-cC--c-ccCCHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999975 44788777554 456666677766543 21 1 123344454556788888 8
Q ss_pred HHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhh
Q 023813 89 LSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQA 138 (277)
Q Consensus 89 ~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~ 138 (277)
+.+.+++++++++++++++.+.++.|++..++++++++|++++.++.|..
T Consensus 221 ~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~ 270 (293)
T PRK10532 221 LPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALG 270 (293)
T ss_pred HHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 89999999999999999999999999999999999999999999554443
No 31
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.91 E-value=2.9e-08 Score=87.69 Aligned_cols=127 Identities=11% Similarity=-0.033 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHH-
Q 023813 9 EALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG- 87 (277)
Q Consensus 9 ~~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~- 87 (277)
+.++.++.++++++|+...+..|... . -++....++++.++++++.++.... +.... ...+.+++..+...|+++
T Consensus 148 ~~~G~l~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~i~~l~i~~s 223 (292)
T PRK11272 148 NPWGAILILIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLS-GERLT-ALPTLSGFLALGYLAVFGS 223 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHc-CCccc-ccCCHHHHHHHHHHHHHHH
Confidence 35688999999999999999999853 3 3456677899999999888876543 22111 112456777888889988
Q ss_pred HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhhh
Q 023813 88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAK 139 (277)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~ 139 (277)
.+.+.++++++++.++++++.+.++.|++.+++++++++|++++.++.|...
T Consensus 224 ~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~l 275 (292)
T PRK11272 224 IIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGV 275 (292)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999996665543
No 32
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=2.7e-06 Score=74.15 Aligned_cols=246 Identities=14% Similarity=0.141 Sum_probs=176.0
Q ss_pred HHHHHHHHHhCCCCHHHHHH--HHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhccccCh
Q 023813 26 LNTLFKAAASKGLSYYVFVA--YSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSP 103 (277)
Q Consensus 26 ~~~~~k~~~~~~~~p~~~~~--~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~ 103 (277)
.-+.-|.++.+.=-|..+.. ++.+...+++...-.. |-.+.+++++++.++++-..++..+....-..+++|.+.
T Consensus 27 m~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~---~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnV 103 (314)
T KOG1444|consen 27 MTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL---GLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNV 103 (314)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh---ceeecCCcChHHHHHHccHHHHHHHHHHHccccccccCc
Confidence 45566777765223444444 8888887776655322 222235678888888888899888888888999999999
Q ss_pred hhHhhhhhhhHHHHHHHHHHHhhccccccccchhh-hhhhhhheec-cCchh-hHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 023813 104 TLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQA-KIIGTMVSIS-VSNWV-TGGFLLAAQCFLLSIWSILLTQIINIY 180 (277)
Q Consensus 104 ~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~-~~~g~~~~~~-~~~~~-~G~~l~l~~a~~~a~~~v~~~~~~~~~ 180 (277)
..-.++=..+|+++++...+++|.+++++.|..+. .+.|...... +..+. .|-.+.+...++-+.+.+..|+..+..
T Consensus 104 pm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~ 183 (314)
T KOG1444|consen 104 PMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAAFVVYVKKSVDSA 183 (314)
T ss_pred hHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999888765 4455444443 22333 478999999999999999999876542
Q ss_pred C-hhHHHHHHHHHHHHHHHHHHHHhcCC-C--Ccccc-ccchhhHHHHHHHHHHhHHHHHHHHHHHhhccCceeehhhhh
Q 023813 181 P-AELLVAFLYNLFAAVIAVPLCLFAEP-D--LSLWR-LKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKP 255 (277)
Q Consensus 181 ~-~~~~~~~~~~~~g~i~~~~~~~~~~~-~--~~~~~-~~~~~~~~~l~~~gv~~t~~~~~~~~~~~~~~~~~~~s~~~~ 255 (277)
+ ......+|..+...+.+.+..+++++ | ....+ ......+..+...++.+-++.|..+ +-.+..+++.-+..+.
T Consensus 184 ~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~-~ct~~~SAtT~tivG~ 262 (314)
T KOG1444|consen 184 NLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSF-LCTRVNSATTTTIVGA 262 (314)
T ss_pred cccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHH-HHHhhccccceeehhh
Confidence 2 12677889999999988888877654 1 00111 1112346677788887777777654 3446677777888886
Q ss_pred hHHHHHHHHHHHHhCCcccC
Q 023813 256 LSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 256 l~pv~a~i~~~~~l~E~~~~ 275 (277)
..-....+-..++.|+++++
T Consensus 263 ~n~l~t~l~~ll~~d~~~~~ 282 (314)
T KOG1444|consen 263 KNKLLTYLGGLLFGDKPFTF 282 (314)
T ss_pred hhhHHHHHHHHhcCCceech
Confidence 66666777777777777765
No 33
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.76 E-value=1.4e-07 Score=83.42 Aligned_cols=123 Identities=17% Similarity=0.116 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHH
Q 023813 10 ALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVL 89 (277)
Q Consensus 10 ~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 89 (277)
..+.++.+.++++|+...+..|... ++.+|..... ..+.+.+.+..... + ... ...+...+..+...|+...+
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~-~~~~~~~~~~---~~~~~~l~~~~~~~-~-~~~-~~~~~~~~~~l~~~~~~t~~ 227 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYA-RGKNGITLFF---ILTALALWIKYFLS-P-QPA-MVFSLPAIIKLLLAAAAMGF 227 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc-CCCCchhHHH---HHHHHHHHHHHHHh-c-Ccc-ccCCHHHHHHHHHHHHHHHH
Confidence 3478899999999999999999964 4578776432 33444444433322 2 111 23455667676666754488
Q ss_pred HHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhhh
Q 023813 90 SQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAK 139 (277)
Q Consensus 90 ~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~ 139 (277)
.+.++++++++.+++.++.+.++.|++..++++++++|++++.++.|...
T Consensus 228 ~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~l 277 (295)
T PRK11689 228 GYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAM 277 (295)
T ss_pred HHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997766553
No 34
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.66 E-value=4.1e-07 Score=75.80 Aligned_cols=229 Identities=14% Similarity=0.117 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhhhhhhhHHHHHHH
Q 023813 41 YVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTL 120 (277)
Q Consensus 41 ~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l 120 (277)
..+++.++..-.+.-=.+..++ ++.+.++. + -+.+...+.-..+.+..-+.++++.|=.+..+=-+.-|+=++++
T Consensus 54 laLVf~qC~~N~vfAkvl~~ir-~~~~~D~t---~-~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMil 128 (337)
T KOG1580|consen 54 LALVFFQCTANTVFAKVLFLIR-KKTEIDNT---P-TKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMIL 128 (337)
T ss_pred HHHHHHHHHHHHHHHHhheeec-ccccccCC---c-chHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeee
Confidence 4566666665555432333333 21111111 1 12233334444788888899999998877777778889999999
Q ss_pred HHHHhhccccccccchhhhh-hhhhheec---------cCchhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Q 023813 121 AVLFRMEKLALRTLSTQAKI-IGTMVSIS---------VSNWVTGGFLLAAQCFLLSIWSILLTQIINIYP-AELLVAFL 189 (277)
Q Consensus 121 ~~l~~~e~~~~~~~~~i~~~-~g~~~~~~---------~~~~~~G~~l~l~~a~~~a~~~v~~~~~~~~~~-~~~~~~~~ 189 (277)
++++.|++.+|++...+..+ +|+.+..- +.....|.++.+.+-..=..-...+.|..+++. +....+.+
T Consensus 129 GVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~ 208 (337)
T KOG1580|consen 129 GVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFY 208 (337)
T ss_pred ehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHH
Confidence 99999999999988877644 56555443 233468999999888877777788888755432 33678888
Q ss_pred HHHHHHHHHHHHHHhcCCCCc--cccccchhhHHHHHHHHHHhHHHHHHHHHHHhhccCceeehhhhhhHHHHHHHHHHH
Q 023813 190 YNLFAAVIAVPLCLFAEPDLS--LWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGII 267 (277)
Q Consensus 190 ~~~~g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~gv~~t~~~~~~~~~~~~~~~~~~~s~~~~l~pv~a~i~~~~ 267 (277)
.++.+++.+..-..+.++-++ -+..-.+..|..+..+++ ++++++++.+.-+..-||-.-|+++...-.|+++.+++
T Consensus 209 ~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVl 287 (337)
T KOG1580|consen 209 TNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVL 287 (337)
T ss_pred HHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHH
Confidence 999998887766666543211 111123345667777777 88999999999999999999999999999999999999
Q ss_pred HhCCcccC
Q 023813 268 FLGDTLHL 275 (277)
Q Consensus 268 ~l~E~~~~ 275 (277)
+++.+++.
T Consensus 288 lf~npls~ 295 (337)
T KOG1580|consen 288 LFNNPLSG 295 (337)
T ss_pred HhcCcCcH
Confidence 99998864
No 35
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.65 E-value=3.9e-07 Score=80.71 Aligned_cols=120 Identities=14% Similarity=0.171 Sum_probs=92.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhcCCCCccc--cccchhhHHHHHHHHHH
Q 023813 152 WVTGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLW--RLKPDVALVSIVYSAFL 229 (277)
Q Consensus 152 ~~~G~~l~l~~a~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gv~ 229 (277)
...|.++.+.++++|+...+..|.. ++.| |.+..++...++.+.+.+...... +.... ...+...+. ....+.+
T Consensus 6 ~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~ 81 (296)
T PRK15430 6 TRQGVLLALAAYFIWGIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICR-QWSYLKTLIQTPQKIF-MLAVSAV 81 (296)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHcCHHHHH-HHHHHHH
Confidence 4579999999999999999999764 5666 699999999999887766654332 11110 011122232 2335555
Q ss_pred hHHHHHHHHHHHhhccCceeehhhhhhHHHHHHHHHHHHhCCcccC
Q 023813 230 GPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 230 ~t~~~~~~~~~~~~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~ 275 (277)
.....+.++++++++.+++.++...++.|++..+++++++||+++.
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~ 127 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRR 127 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 7778899999999999999999999999999999999999999875
No 36
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.64 E-value=9.5e-07 Score=80.20 Aligned_cols=121 Identities=11% Similarity=0.065 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHhhccCCC---CCCchHHHHHHHHHHHHHH
Q 023813 12 LLSATVAVECTTVGLNTLFKAAASKGLSY-YVFVAYSYPLATLALLPLPLIFRNTTTV---VPSFKFSILSRIILLSFIG 87 (277)
Q Consensus 12 ~~~~ll~~~~~wg~~~~~~k~~~~~~~~p-~~~~~~R~~~a~l~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~ 87 (277)
+...++.++++|+...+..|..... .|| ...+++...++.+.+.+..... ++... ....+.. ...++..++..
T Consensus 190 G~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~-~~~i~y~~i~t 266 (358)
T PLN00411 190 GGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVV-EKNNPSVWIIHFDIT-LITIVTMAIIT 266 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHH-ccCCcccceeccchH-HHHHHHHHHHH
Confidence 6678888999999999999987654 655 4667777777777666555543 22111 0111222 22233344444
Q ss_pred HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccc
Q 023813 88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLS 135 (277)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~ 135 (277)
.+++.++++++++.+++.++...++.|+++.++++++++|++++.++.
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~i 314 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLI 314 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 678899999999999999999999999999999999999999999543
No 37
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.63 E-value=1.4e-07 Score=82.97 Aligned_cols=130 Identities=16% Similarity=0.029 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHH
Q 023813 10 ALLLSATVAVECTTVGLNTLFKAAASKGLSYY----VFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSF 85 (277)
Q Consensus 10 ~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~----~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 85 (277)
.++..+.++++++|+...+..|... ++.+|. ....+.+...++.+.+....+ +++ . ...+..++......+.
T Consensus 143 ~~g~~~~l~aal~~a~~~i~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~-~~~~~~~~~~~~~~~~ 218 (281)
T TIGR03340 143 RKAYAWALAAALGTAIYSLSDKAAA-LGVPAFYSALGYLGIGFLAMGWPFLLLYLKR-HGR-S-MFPYARQILPSATLGG 218 (281)
T ss_pred hhHHHHHHHHHHHHHHhhhhccccc-cchhcccccHHHHHHHHHHHHHHHHHHHHHH-hcc-c-hhhhHHHHHHHHHHHH
Confidence 4566778889999999999999753 234442 233334433322222322222 111 1 1112223344445555
Q ss_pred HH-HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhhhh-hhh
Q 023813 86 IG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKI-IGT 143 (277)
Q Consensus 86 ~~-~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~~-~g~ 143 (277)
+. .+.+.++++++++.+++.++.+.++.|++..++++++++|++++.++.|...+ .|+
T Consensus 219 ~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv 278 (281)
T TIGR03340 219 LMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGL 278 (281)
T ss_pred HHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhH
Confidence 55 88999999999999999999999999999999999999999999988776533 443
No 38
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.55 E-value=2.5e-06 Score=75.62 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHhhccCCC----CCCchHHHHHHHHHH
Q 023813 10 ALLLSATVAVECTTVGLNTLFKAAASKG--LSYYVFVAYSYPLATLALLPLPLIFRNTTTV----VPSFKFSILSRIILL 83 (277)
Q Consensus 10 ~~~~~~ll~~~~~wg~~~~~~k~~~~~~--~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 83 (277)
..+.++.+.++++|+...+..|...+++ .+.....++-..++.+.+....... +.... ....+..++..++..
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l 220 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLIL-DGSATMIHSLVTIDMTTILSLMYL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHh-cCchhhhhhhccCCHHHHHHHHHH
Confidence 4688899999999999999999864332 1223334444444444333332222 21110 013456778888888
Q ss_pred HHHH-HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhh
Q 023813 84 SFIG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQA 138 (277)
Q Consensus 84 g~~~-~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~ 138 (277)
|++. .+.+.+++.++++.++++++.+.++.|++..++++++++|++++.++.|..
T Consensus 221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~ 276 (299)
T PRK11453 221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAV 276 (299)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 9988 899999999999999999999999999999999999999999999655443
No 39
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.54 E-value=1.1e-06 Score=76.07 Aligned_cols=119 Identities=10% Similarity=0.140 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhcCCC---Cccccccchhh-HHHHHHHHHH
Q 023813 154 TGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPD---LSLWRLKPDVA-LVSIVYSAFL 229 (277)
Q Consensus 154 ~G~~l~l~~a~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~---~~~~~~~~~~~-~~~l~~~gv~ 229 (277)
.|..+.+.++++|+...+..|. ..+.| |.++.++..+++++.+.+......+. ...++...... +..+...|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 4788999999999999999997 45666 69999999999988776655433210 00111111112 3344555654
Q ss_pred hHHHHHHHHHHHhhccCceeehhhhhhHHHHHHHHHHHHhCCcccC
Q 023813 230 GPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 230 ~t~~~~~~~~~~~~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~ 275 (277)
....+.++++++++.+++.++...++.|++..+++++++||+++.
T Consensus 80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~ 124 (256)
T TIGR00688 80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISR 124 (256)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 578889999999999999999999999999999999999999985
No 40
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.48 E-value=9e-07 Score=78.53 Aligned_cols=125 Identities=15% Similarity=0.110 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchH---------HHHH
Q 023813 9 EALLLSATVAVECTTVGLNTLFKAAASK-GLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKF---------SILS 78 (277)
Q Consensus 9 ~~~~~~~ll~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~---------~~~~ 78 (277)
+..+.+..++++++|+...+..|...++ +.||..+..+-+..+++.+.|+.... +.... ...+. ....
T Consensus 143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~ 220 (302)
T TIGR00817 143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFIT-EGPPF-LPHGFMQAISGVNVTKIY 220 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHH-cchHH-HHHHHHHhhcccCchHHH
Confidence 4558888999999999999999997641 58999999999999999999987654 21110 00000 0111
Q ss_pred H-HHHHHHHH-HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccc
Q 023813 79 R-IILLSFIG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLS 135 (277)
Q Consensus 79 ~-~~~~g~~~-~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~ 135 (277)
. .+..+... ...+.+++.+++++++.++++..+..|+++.++++++++|+++..++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~ 279 (302)
T TIGR00817 221 TVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVF 279 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHH
Confidence 1 22223222 334467788999999999999999999999999999999999998543
No 41
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.38 E-value=6.5e-05 Score=65.14 Aligned_cols=231 Identities=14% Similarity=0.085 Sum_probs=159.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhhhhhhhHHHHH
Q 023813 39 SYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTF 118 (277)
Q Consensus 39 ~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~ 118 (277)
+|..+++..-+.+.++-..... .++.. ...++.+..+...++...+...|-+.+++|.+=.+-.+==..=-+=++
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~---~~k~~--~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVm 124 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLK---WWKKE--LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVM 124 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHh---ccccc--CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHH
Confidence 6777788877777766544332 22222 122445666667788888899999999999975444443332223345
Q ss_pred HHHHHHhhccccccccchhhhhhhhhheec------------cCchhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-hhHH
Q 023813 119 TLAVLFRMEKLALRTLSTQAKIIGTMVSIS------------VSNWVTGGFLLAAQCFLLSIWSILLTQIINIYP-AELL 185 (277)
Q Consensus 119 ~l~~l~~~e~~~~~~~~~i~~~~g~~~~~~------------~~~~~~G~~l~l~~a~~~a~~~v~~~~~~~~~~-~~~~ 185 (277)
+.+.++.|.|.++++..-...+.+++..+. +++...|..++...-+.=+.-+..++++.+++. ++..
T Consensus 125 lmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~ 204 (327)
T KOG1581|consen 125 LMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLH 204 (327)
T ss_pred HHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhH
Confidence 888899999999987664444433333332 134468999988888888888889999887643 3588
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC--CCccccccchhhHHHHHHHHHHhHHHHHHHHHHHhhccCceeehhhhhhHHHHHHH
Q 023813 186 VAFLYNLFAAVIAVPLCLFAEP--DLSLWRLKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAI 263 (277)
Q Consensus 186 ~~~~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gv~~t~~~~~~~~~~~~~~~~~~~s~~~~l~pv~a~i 263 (277)
++++.++++++.........+. +..++-..+++.+.-++.... ..++++.+.++-+++-|+-..+.++..-=.+++.
T Consensus 205 mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~ 283 (327)
T KOG1581|consen 205 MMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIM 283 (327)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHH
Confidence 8999999999887776443221 111222223444555555555 4479999999999999999999999999999999
Q ss_pred HHHHHhCCcccC
Q 023813 264 TGIIFLGDTLHL 275 (277)
Q Consensus 264 ~~~~~l~E~~~~ 275 (277)
++.+.+|.+++.
T Consensus 284 lS~i~f~h~~s~ 295 (327)
T KOG1581|consen 284 LSCIVFGHPLSS 295 (327)
T ss_pred HHHHHhCCccch
Confidence 999999988764
No 42
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.38 E-value=1.1e-05 Score=64.02 Aligned_cols=125 Identities=19% Similarity=0.266 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC---Cc-------hHHH
Q 023813 13 LSATVAVECTTVGLNTLFKAAASK------GLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVP---SF-------KFSI 76 (277)
Q Consensus 13 ~~~ll~~~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~---~~-------~~~~ 76 (277)
++..+.+.++-+...+..|...++ ..+|.++..+-...+.+.+.+..... ++.+... .. ..+.
T Consensus 2 ~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 2 FILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLL-EGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHhhhhhhcchHHH
Confidence 567788999999999999998876 68999999999999999999988776 3322100 01 1233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhh
Q 023813 77 LSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQA 138 (277)
Q Consensus 77 ~~~~~~~g~~~~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~ 138 (277)
+..++..|+++...+.+.+..++++++.+.++....-.+.+.++++++++|+++++++.|+.
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~ 142 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIV 142 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHH
Confidence 45556667777889999999999999999999999999999999999999999999777665
No 43
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.37 E-value=7.8e-06 Score=64.84 Aligned_cols=120 Identities=13% Similarity=0.299 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------CChhHHHHHHHHHHHHHHHHHHHHhcCCCCc--cc-ccc------chhh
Q 023813 155 GGFLLAAQCFLLSIWSILLTQIINI------YPAELLVAFLYNLFAAVIAVPLCLFAEPDLS--LW-RLK------PDVA 219 (277)
Q Consensus 155 G~~l~l~~a~~~a~~~v~~~~~~~~------~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~--~~-~~~------~~~~ 219 (277)
|.++++.++++.|++++..|+..++ ..++.....+....+.+.+.+.+...|++.. .. +.. ..+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 6789999999999999999988655 2356888889999999999999888775321 11 110 1233
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhccCceeehhhhhhHHHHHHHHHHHHhCCcccC
Q 023813 220 LVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 220 ~~~l~~~gv~~t~~~~~~~~~~~~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~ 275 (277)
+..++..|+.+ ..-....+..+++.+|...++...+..+...++|++++||++|.
T Consensus 81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~ 135 (153)
T PF03151_consen 81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITP 135 (153)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCH
Confidence 44555555533 45555677888999999999999999999999999999999885
No 44
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.36 E-value=3.5e-05 Score=66.61 Aligned_cols=190 Identities=16% Similarity=0.105 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccChhhHhhhhh-hhHHHHHHHHHHHhhccccccccc-hh---h-hhhhhhheec
Q 023813 75 SILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISN-LTPAFTFTLAVLFRMEKLALRTLS-TQ---A-KIIGTMVSIS 148 (277)
Q Consensus 75 ~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~a~~l~~-~~P~~~~~l~~l~~~e~~~~~~~~-~i---~-~~~g~~~~~~ 148 (277)
+.+...++.|++=.+.|...+.+.++.+.+.+.=+.. .+=+.+.+.+.++++|.-+.+++. +. . .++|+.+.-.
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 6677777777777899999999999999888776654 455567889999999999887764 22 1 1233322222
Q ss_pred -----c-----CchhhHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchh
Q 023813 149 -----V-----SNWVTGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLKPDV 218 (277)
Q Consensus 149 -----~-----~~~~~G~~l~l~~a~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 218 (277)
+ .+...|....+.+++.|..|.+..|.. +.+ +.....-| .+|-++.........++. .++ ..
T Consensus 123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~--~~~-~~~~~lPq-aiGm~i~a~i~~~~~~~~-~~~---k~ 194 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF--HVS-GWSAFLPQ-AIGMLIGAFIFNLFSKKP-FFE---KK 194 (269)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc--CCC-hhHhHHHH-HHHHHHHHHHHhhccccc-ccc---cc
Confidence 1 123568999999999999999997653 333 35544433 333333322222211111 111 12
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhhccCceeehhhhhhHHHHHHHHHHHHhCCccc
Q 023813 219 ALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLH 274 (277)
Q Consensus 219 ~~~~l~~~gv~~t~~~~~~~~~~~~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~ 274 (277)
.|..++ .|+ .=.++-.++..+.++.|.+.+=.++-+.++.+.+.|.+++||+=+
T Consensus 195 ~~~nil-~G~-~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt 248 (269)
T PF06800_consen 195 SWKNIL-TGL-IWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKT 248 (269)
T ss_pred hHHhhH-HHH-HHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCc
Confidence 233322 233 235677888999999999999999999999999999999999743
No 45
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.33 E-value=9.7e-06 Score=71.62 Aligned_cols=120 Identities=13% Similarity=-0.057 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHH----HHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHH
Q 023813 10 ALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYP----LATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSF 85 (277)
Q Consensus 10 ~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~----~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 85 (277)
.|+....+++.+.++......|.. + .||.+.++.... .+.+++.++ + + . + +. +.+.....+..|+
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~~~~~~---~-~-~-~-~~-~~~~~~~~~~~Gi 219 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF--G-VDGLSVLLPQAIGMVIGGIIFNLGH---I-L-A-K-PL-KKYAILLNILPGL 219 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc--C-CCcceehhHHHHHHHHHHHHHHHHH---h-c-c-c-ch-HHHHHHHHHHHHH
Confidence 679999999999999999999964 3 799988666654 444444333 1 1 1 2 22 3334445555777
Q ss_pred HHHHHHHHHHHhcc-ccChhhHhhhhhhhHHHHHHHHHHHhhcccccccc----chhhhh
Q 023813 86 IGVLSQIFGYTGIA-CSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTL----STQAKI 140 (277)
Q Consensus 86 ~~~~~~~~~~~~l~-~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~----~~i~~~ 140 (277)
+-++.+.+|+.+.+ +.+++.++.+.+..|+..++.+++++||+.+++++ .|...+
T Consensus 220 ~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lI 279 (290)
T TIGR00776 220 MWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILI 279 (290)
T ss_pred HHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHH
Confidence 77888999999999 99999999999999999999999999999999988 554433
No 46
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.32 E-value=0.00023 Score=61.85 Aligned_cols=203 Identities=16% Similarity=0.211 Sum_probs=129.7
Q ss_pred CchHHHHHH-HHHHHHHHHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhhhhhhhhheec-
Q 023813 71 SFKFSILSR-IILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSIS- 148 (277)
Q Consensus 71 ~~~~~~~~~-~~~~g~~~~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~~~g~~~~~~- 148 (277)
+.+|++..+ ....|+..++.-.+-+++++|++.+.=+..=+..++|+.+++..+.-||.+|.-..-+..+.+++..+.
T Consensus 77 ~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~ 156 (349)
T KOG1443|consen 77 VLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTY 156 (349)
T ss_pred CCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEe
Confidence 567887765 444455558888889999999999888888889999999999999999999985443333322233332
Q ss_pred -cCch-hhHHHHHHHHHHHHHHHHHHHHHHHhhCC----hhHHHHHHHHHHHHHHHHHHHHhcCCCC-----ccccc-cc
Q 023813 149 -VSNW-VTGGFLLAAQCFLLSIWSILLTQIINIYP----AELLVAFLYNLFAAVIAVPLCLFAEPDL-----SLWRL-KP 216 (277)
Q Consensus 149 -~~~~-~~G~~l~l~~a~~~a~~~v~~~~~~~~~~----~~~~~~~~~~~~g~i~~~~~~~~~~~~~-----~~~~~-~~ 216 (277)
+.++ ..|.++++.++++-++-=.......++.| +|........-.-.+.+.+....+|++. ..++. .+
T Consensus 157 KsTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~ 236 (349)
T KOG1443|consen 157 KSTQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDT 236 (349)
T ss_pred cccceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCc
Confidence 3333 46888888887775544433333333322 3455555544444455566666666531 12221 12
Q ss_pred hhhHHHHHHHHHHhHHHHHHH---HHHHhhccCceeehhhhhhHHHHHHHHHHHHhCCccc
Q 023813 217 DVALVSIVYSAFLGPSFNTII---HTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLH 274 (277)
Q Consensus 217 ~~~~~~l~~~gv~~t~~~~~~---~~~~~~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~ 274 (277)
...+..+...+. +...++.+ =+..+.+.+.-..+++.-..-+-..++|.++.+|+++
T Consensus 237 ~~~~rv~g~i~l-~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls 296 (349)
T KOG1443|consen 237 GLILRVIGLISL-GGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLS 296 (349)
T ss_pred cHHHHHHHHHHH-HHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchh
Confidence 222333333332 33444443 2334577888889999999999999999999999987
No 47
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.24 E-value=3.4e-05 Score=67.21 Aligned_cols=123 Identities=22% Similarity=0.152 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHH-
Q 023813 10 ALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVA-YSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG- 87 (277)
Q Consensus 10 ~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~-~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~- 87 (277)
..+....+.+.++|+...+..|... ..++..... +.+..+.....+.... .+. .+.+.+++......|+++
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~g~~~~ 225 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFFLS--GFG---APILSRAWLLLLYLGVFST 225 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHhc--ccc---ccCCHHHHHHHHHHHHHHH
Confidence 5788999999999999999999765 367777776 4444222222222211 111 134567788888899998
Q ss_pred HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhhh
Q 023813 88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAK 139 (277)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~ 139 (277)
...+.+++.+++..+++..+.+.++.|++..++++++++|+++..++.|...
T Consensus 226 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~l 277 (292)
T COG0697 226 GLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAAL 277 (292)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999997776543
No 48
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.20 E-value=5e-05 Score=68.89 Aligned_cols=130 Identities=13% Similarity=0.088 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCC----------CCc
Q 023813 9 EALLLSATVAVECTTVGLNTLFKAAASK------GLSYYVFVAYSYPLATLALLPLPLIFRNTTTVV----------PSF 72 (277)
Q Consensus 9 ~~~~~~~ll~~~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~----------~~~ 72 (277)
+..+.++.++++++|+...+..|...++ +.++..+..+-..++++.++|+.... +..... ...
T Consensus 192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~-e~~~~~~~~~~~~~~~~~~ 270 (350)
T PTZ00343 192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFF-EGKKWVPVWTNYTANMTNY 270 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhhhccccc
Confidence 4568899999999999999999998753 26677777777889999988887643 211000 000
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhhh
Q 023813 73 KFSILSR-IILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAK 139 (277)
Q Consensus 73 ~~~~~~~-~~~~g~~~~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~ 139 (277)
....... .+..++...+.+.+-|++++++++.+.++..++-|+++.++++++++|++++.++.|.+.
T Consensus 271 ~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~l 338 (350)
T PTZ00343 271 TKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAV 338 (350)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHH
Confidence 1111111 122222224444555579999999999999999999999999999999999997666553
No 49
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.12 E-value=9.7e-06 Score=61.12 Aligned_cols=62 Identities=18% Similarity=0.120 Sum_probs=54.1
Q ss_pred HHHHHHH-HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhhhhhh
Q 023813 81 ILLSFIG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIG 142 (277)
Q Consensus 81 ~~~g~~~-~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~~~g 142 (277)
...++++ +.++.++..++++.|.+.+..+.++.|+++.+++++++|||++++++.|+..++.
T Consensus 40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~ 102 (111)
T PRK15051 40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIG 102 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 3344455 7899999999999999999999999999999999999999999999988875533
No 50
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.04 E-value=6e-05 Score=63.75 Aligned_cols=133 Identities=16% Similarity=0.110 Sum_probs=108.0
Q ss_pred hHhHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHH
Q 023813 7 FREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFI 86 (277)
Q Consensus 7 ~~~~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 86 (277)
..|..+..+.+.+..||+..-+..|.+- +..|-.+-+..-+.+++++..|+.... .... -.+.+-+..-+..+++
T Consensus 144 ~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g-~~~~g~~g~a~gm~vAaviv~Pig~~~-ag~~---l~~p~ll~laLgvavl 218 (292)
T COG5006 144 SLDPVGVALALGAGACWALYIVLGQRAG-RAEHGTAGVAVGMLVAALIVLPIGAAQ-AGPA---LFSPSLLPLALGVAVL 218 (292)
T ss_pred cCCHHHHHHHHHHhHHHHHHHHHcchhc-ccCCCchHHHHHHHHHHHHHhhhhhhh-cchh---hcChHHHHHHHHHHHH
Confidence 4455678888999999999999999974 346777888899999999999997643 2111 1234445556677888
Q ss_pred H-HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhhhhhhhh
Q 023813 87 G-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTM 144 (277)
Q Consensus 87 ~-~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~~~g~~ 144 (277)
. .+.+.+...++++.+...-+++.++.|.+.++.++++++|.+++.||.++..++...
T Consensus 219 SSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAs 277 (292)
T COG5006 219 SSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAAS 277 (292)
T ss_pred hcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 8 899999999999999999999999999999999999999999999999887554433
No 51
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.76 E-value=9.6e-05 Score=55.78 Aligned_cols=56 Identities=16% Similarity=0.310 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhhccCceeehhhhhhHHHHHHHHHHHHhCCcccC
Q 023813 219 ALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 219 ~~~~l~~~gv~~t~~~~~~~~~~~~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~ 275 (277)
.+...+..|.+....++.+|.++.++.++ .+++...+.|+++.+++++++||+++.
T Consensus 33 ~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~ 88 (113)
T PF13536_consen 33 PWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSP 88 (113)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 34455556776667899999999999995 888999999999999999999999985
No 52
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.75 E-value=0.015 Score=52.48 Aligned_cols=260 Identities=14% Similarity=0.049 Sum_probs=140.3
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHHHHH-HHHHhhccCCC-C-CCchHHHHHHHHHH
Q 023813 8 REALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYS-YPLATLALLP-LPLIFRNTTTV-V-PSFKFSILSRIILL 83 (277)
Q Consensus 8 ~~~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R-~~~a~l~l~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~ 83 (277)
+-..+++..+++.++||+.++-.|. .++ -+ .+.-+.- ..++.++.-. ..... .+.-. . ...+.+.+..-++.
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~-w~-wE~~W~v~gi~~wl~~~~~~g~~~-~~~f~~~~~~~~~~~~~~~~l~ 79 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKK-WS-WETMWSVGGIFSWLILPWLIAALL-LPDFWAYYSSFSGSTLLPVFLF 79 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCC-Cc-hhHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHhcCHHHHHHHHHH
Confidence 3466899999999999999999998 343 33 1111110 1111111110 00000 11100 0 12345556666666
Q ss_pred HHHHHHHHHHHHHhccccChhhHhhh-hhhhHHHHHHHHHHHhhccc---cccccc----hhh-hhhhhhheec-----c
Q 023813 84 SFIGVLSQIFGYTGIACSSPTLSSAI-SNLTPAFTFTLAVLFRMEKL---ALRTLS----TQA-KIIGTMVSIS-----V 149 (277)
Q Consensus 84 g~~~~~~~~~~~~~l~~~~~~~a~~l-~~~~P~~~~~l~~l~~~e~~---~~~~~~----~i~-~~~g~~~~~~-----~ 149 (277)
|++=...+..++.++++.+.+.+.-+ ..++=+..+++..++++|-. +..+.. +++ ..+|+.+.-. +
T Consensus 80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~ 159 (345)
T PRK13499 80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKE 159 (345)
T ss_pred HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 76668999999999999999887666 44778888888888888765 333322 111 1223222211 1
Q ss_pred -------C---chhhHHHHHHHHHHHHHHHH-------HHHHHHH-hhCChhHHHHHHH---HHHHHHHH-HHHHHh---
Q 023813 150 -------S---NWVTGGFLLAAQCFLLSIWS-------ILLTQII-NIYPAELLVAFLY---NLFAAVIA-VPLCLF--- 204 (277)
Q Consensus 150 -------~---~~~~G~~l~l~~a~~~a~~~-------v~~~~~~-~~~~~~~~~~~~~---~~~g~i~~-~~~~~~--- 204 (277)
+ +...|...++++.+.+++|+ ...+... .+.+ +.....-+ ++.|+.+. .+++..
T Consensus 160 ~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~-~~~~~lp~~~~~~~G~~~~n~~~~~~~~~ 238 (345)
T PRK13499 160 RKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVD-PLYAALPSYVVIMGGGAITNLGFCFIRLA 238 (345)
T ss_pred cccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 23589999999999999999 4443321 1222 22222222 22444433 333332
Q ss_pred cCCCC---ccccccc---hhhHHHHHHHHHHhHHHHHHHHHHHhhccCceeehh---hh-hhHHHHHHHHHHHHhCCccc
Q 023813 205 AEPDL---SLWRLKP---DVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAI---FK-PLSVVIAAITGIIFLGDTLH 274 (277)
Q Consensus 205 ~~~~~---~~~~~~~---~~~~~~l~~~gv~~t~~~~~~~~~~~~~~~~~~~s~---~~-~l~pv~a~i~~~~~l~E~~~ 274 (277)
.+.+. .+..... .......+..|+ .=.+++.+|..+-++.|...... +. -+..+++.+.|. ++||.=+
T Consensus 239 k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~-~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~ 316 (345)
T PRK13499 239 KNKDLSLKADFSLAKPLLITNVLLSALAGV-MWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKG 316 (345)
T ss_pred hCCCcccchhccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccC
Confidence 11111 1111100 011111122222 33566677777778877664444 44 555688999998 5999744
No 53
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=97.71 E-value=0.001 Score=57.23 Aligned_cols=120 Identities=17% Similarity=0.180 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhhhh-hhhhheec----------c--
Q 023813 83 LSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKI-IGTMVSIS----------V-- 149 (277)
Q Consensus 83 ~g~~~~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~~-~g~~~~~~----------~-- 149 (277)
-+++-..+..+.|.|+.+|+++.-..+=...-+|+.+++.-+++.+++.++|.++... .|.++.-. .
T Consensus 92 Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~ 171 (372)
T KOG3912|consen 92 PALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDY 171 (372)
T ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCcccc
Confidence 4566677788899999999998888888889999999999999999999999998754 55443332 0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHHHHHH
Q 023813 150 SNWVTGGFLLAAQCFLLSIWSILLTQIINIYP-AELLVAFLYNLFAAVIAVPLC 202 (277)
Q Consensus 150 ~~~~~G~~l~l~~a~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~g~i~~~~~~ 202 (277)
++-..|+++.+.+-+.-|+..+.-+|..++.+ +|.....|+.++|.++....+
T Consensus 172 s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~ 225 (372)
T KOG3912|consen 172 SSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLA 225 (372)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHH
Confidence 22357999999999999999999888766533 679999999999965554443
No 54
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.67 E-value=0.00054 Score=52.99 Aligned_cols=112 Identities=19% Similarity=0.162 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHH-HHH
Q 023813 12 LLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIG-VLS 90 (277)
Q Consensus 12 ~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~ 90 (277)
+++.++...++=+....+.|.+.++ .++.+.... . . ...... . .+ ..++..|+.. .++
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~------~~~~~~--~----~p------~~~i~lgl~~~~la 61 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-I------AALLAF--G----LA------LRAVLLGLAGYALS 61 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-H------HHHHHH--h----cc------HHHHHHHHHHHHHH
Confidence 5777777777778889999998765 444332221 1 0 000000 0 01 1245568877 899
Q ss_pred HHHHHHhccccChhhHhhhhhhhHHHHHHHHHH--Hhhccccccccchhhhh-hhhh
Q 023813 91 QIFGYTGIACSSPTLSSAISNLTPAFTFTLAVL--FRMEKLALRTLSTQAKI-IGTM 144 (277)
Q Consensus 91 ~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l--~~~e~~~~~~~~~i~~~-~g~~ 144 (277)
+.++..++++.+.+.+.-+.+..+..+.+.++. ++||+++++++.|+..+ +|+.
T Consensus 62 ~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~ 118 (129)
T PRK02971 62 MLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVW 118 (129)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888888884 79999999988887754 4433
No 55
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.66 E-value=0.0029 Score=56.11 Aligned_cols=238 Identities=13% Similarity=0.122 Sum_probs=129.0
Q ss_pred hHhHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHH
Q 023813 7 FREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFI 86 (277)
Q Consensus 7 ~~~~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 86 (277)
.++.-+....+.++++-+......|....+ .+. .-. + +++.. ++. .++..+ ..|+.
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r-~~~---~~~---------------~-~~~~~-~~~-l~~~~W--~~G~~ 58 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLR-LPR---GSL---------------R-AGSGG-RSY-LRRPLW--WIGLL 58 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc---ccc---------------c-ccchh-hHH-HhhHHH--HHHHH
Confidence 455667788888888889888888876432 110 000 0 00000 111 122222 23444
Q ss_pred H-HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhh-hhhhhhheec----cCc-h-------
Q 023813 87 G-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQA-KIIGTMVSIS----VSN-W------- 152 (277)
Q Consensus 87 ~-~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~-~~~g~~~~~~----~~~-~------- 152 (277)
. .++..+-+.++.+.|++..+=+....-++..+++..++|||++++++.|.. ...|..+.+. +++ .
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~ 138 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIA 138 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHH
Confidence 4 667778889999999999888888899999999999999999999999876 5577655543 110 0
Q ss_pred ---hhHH--HHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHH-------HHHHHhcCCCCccccccchhhH
Q 023813 153 ---VTGG--FLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIA-------VPLCLFAEPDLSLWRLKPDVAL 220 (277)
Q Consensus 153 ---~~G~--~l~l~~a~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~i~~-------~~~~~~~~~~~~~~~~~~~~~~ 220 (277)
..+. ...+....+..+.....+|..++ +.......+.++|+... ..+....+++ -+..++..|
T Consensus 139 ~~~~~~fl~y~~~~~~~~~~L~~~~~~r~g~~--~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~---~~f~~~~~y 213 (300)
T PF05653_consen 139 LLSQPGFLVYFILVLVLILILIFFIKPRYGRR--NILVYISICSLIGSFTVLSAKAISILIKLTFSGD---NQFTYPLTY 213 (300)
T ss_pred HhcCcceehhHHHHHHHHHHHHHhhcchhccc--ceEEEEEEeccccchhhhHHHHHHHHHHHHhcCc---hhhhhhHHH
Confidence 0111 11111111112222222221111 11111111222222111 1111111111 112233345
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhccCceeehhhhhh-HHHHHHHHHHHHhCCccc
Q 023813 221 VSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPL-SVVIAAITGIIFLGDTLH 274 (277)
Q Consensus 221 ~~l~~~gv~~t~~~~~~~~~~~~~~~~~~~s~~~~l-~pv~a~i~~~~~l~E~~~ 274 (277)
..++.+ +.+........++++++.|++.+.+..+. --.++.+-|.++++|.-+
T Consensus 214 ~l~~~~-v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~ 267 (300)
T PF05653_consen 214 LLLLVL-VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSR 267 (300)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhccccc
Confidence 444333 33556666678999999999998887776 455666667778887543
No 56
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=97.66 E-value=0.0003 Score=59.50 Aligned_cols=119 Identities=11% Similarity=0.088 Sum_probs=70.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHHHHHHHhcCCCC-cccc---ccchhhHHHHHHH
Q 023813 152 WVTGGFLLAAQCFLLSIWSILLTQIINIYPAEL-LVAFLYNLFAAVIAVPLCLFAEPDL-SLWR---LKPDVALVSIVYS 226 (277)
Q Consensus 152 ~~~G~~l~l~~a~~~a~~~v~~~~~~~~~~~~~-~~~~~~~~~g~i~~~~~~~~~~~~~-~~~~---~~~~~~~~~l~~~ 226 (277)
...|....+.++++-+.-.+.+++..|+.+... ........++.+...........+. ..+. -.+...|.
T Consensus 83 ~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 157 (222)
T TIGR00803 83 PVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWI----- 157 (222)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHH-----
Confidence 356667777777777777888887755543211 1111112222222111111111110 0111 11111221
Q ss_pred HHHhHHHHHHHHHHHhhccCceeehhhhhhHHHHHHHHHHHHhCCcccC
Q 023813 227 AFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 227 gv~~t~~~~~~~~~~~~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~ 275 (277)
-++..+.+..+..+.+|+.|+...+.....+++++.+++++++||+++.
T Consensus 158 ~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~ 206 (222)
T TIGR00803 158 VGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISS 206 (222)
T ss_pred HHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccH
Confidence 1234566777888999999999999999999999999999999999985
No 57
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.62 E-value=0.00086 Score=51.85 Aligned_cols=101 Identities=18% Similarity=0.168 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhHHHHHHHHHHhHHH
Q 023813 154 TGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIVYSAFLGPSF 233 (277)
Q Consensus 154 ~G~~l~l~~a~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~t~~ 233 (277)
.|.++.+.+.++-+..++.-|+-.++.++ ...... .. ...... . + ....+++|+++.++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-----~~-~~~~~~-~--~-----------p~~~i~lgl~~~~l 60 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-----FI-AALLAF-G--L-----------ALRAVLLGLAGYAL 60 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-----HH-HHHHHH-h--c-----------cHHHHHHHHHHHHH
Confidence 36778889999999999999988777653 332211 00 011110 0 0 01136778889999
Q ss_pred HHHHHHHHhhccCceeehhhhhhHHHHHHHHHHH--HhCCcccC
Q 023813 234 NTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGII--FLGDTLHL 275 (277)
Q Consensus 234 ~~~~~~~~~~~~~~~~~s~~~~l~pv~a~i~~~~--~l~E~~~~ 275 (277)
++.+|.+++++.|.+.+.++....++...+.++. ++||++|+
T Consensus 61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~ 104 (129)
T PRK02971 61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSL 104 (129)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 9999999999999999999999999888888885 89999986
No 58
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.60 E-value=0.00042 Score=57.71 Aligned_cols=226 Identities=14% Similarity=0.231 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhhhhhhhHHHHHHH
Q 023813 41 YVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTL 120 (277)
Q Consensus 41 ~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l 120 (277)
+.+.+.+.+...+.+..+-..+ - .+++.++...++..+++-..--+.---+++|.+...=++.-+++.+.++..
T Consensus 38 flll~vQSlvcvv~l~iLk~l~---~---~~fR~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAyg 111 (309)
T COG5070 38 FLLLAVQSLVCVVGLLILKFLR---L---VEFRLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYG 111 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh---H---hheehhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhh
Confidence 3556666666655555442221 1 112233344444556665544555567899999999999999999999999
Q ss_pred HHHHhhccccccccchhh-hhhhhhheeccC---------chhhHHHHHHHHHHHHHHHHHHHHHHHhh--CChhHHHHH
Q 023813 121 AVLFRMEKLALRTLSTQA-KIIGTMVSISVS---------NWVTGGFLLAAQCFLLSIWSILLTQIINI--YPAELLVAF 188 (277)
Q Consensus 121 ~~l~~~e~~~~~~~~~i~-~~~g~~~~~~~~---------~~~~G~~l~l~~a~~~a~~~v~~~~~~~~--~~~~~~~~~ 188 (277)
..++++.|++...-.... .++...++-.++ ..+.|-++....++.-|.|.+..|+..|- ..+ ....+
T Consensus 112 Evl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d-~dtmf 190 (309)
T COG5070 112 EVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKD-FDTMF 190 (309)
T ss_pred HHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccch-hhHHH
Confidence 999999998876433211 111111111111 23578889999999999999988876542 223 77799
Q ss_pred HHHHHHHHHHHHHHHhcCC-CCcccc-ccchhhHHHHHHHHHHhHHHHHHHHHHHhhccCceeehhhhhhHHHHHHHHHH
Q 023813 189 LYNLFAAVIAVPLCLFAEP-DLSLWR-LKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGI 266 (277)
Q Consensus 189 ~~~~~g~i~~~~~~~~~~~-~~~~~~-~~~~~~~~~l~~~gv~~t~~~~~~~~~~~~~~~~~~~s~~~~l~pv~a~i~~~ 266 (277)
|..+.+..++..+.+++|+ ++.... .-+.+.+.+++..|+.+-+++| +-.|-++-.+++.-|.++-+.-.-..+-|.
T Consensus 191 YnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy-~saWcvrVtSSTtySMvGALNKlp~alaGl 269 (309)
T COG5070 191 YNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISY-CSAWCVRVTSSTTYSMVGALNKLPIALAGL 269 (309)
T ss_pred HhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhh-ccceeEeehhhhHHHHHHHhhhChHHHhhh
Confidence 9999999999999888764 332222 1233456677778875555554 345567778888888888888878888889
Q ss_pred HHhCCccc
Q 023813 267 IFLGDTLH 274 (277)
Q Consensus 267 ~~l~E~~~ 274 (277)
+++||+.+
T Consensus 270 vffdap~n 277 (309)
T COG5070 270 VFFDAPVN 277 (309)
T ss_pred hhcCCchh
Confidence 99998865
No 59
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=97.45 E-value=0.0011 Score=54.19 Aligned_cols=92 Identities=18% Similarity=0.220 Sum_probs=79.3
Q ss_pred HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhhhhhhhhheec--c---CchhhHHHHHHHH
Q 023813 88 VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSIS--V---SNWVTGGFLLAAQ 162 (277)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~~~g~~~~~~--~---~~~~~G~~l~l~~ 162 (277)
.+.++.|..+++.++++.++.+....-.|+.+++++.+++++..-++.+....+|+++.+. + .+.+.|+.....+
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~iGi~~AV~S 143 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEIIGIACAVGS 143 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhhhhHHHHHHH
Confidence 6788999999999999999999999999999999999999999987777666666555554 1 2346899999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 023813 163 CFLLSIWSILLTQIINI 179 (277)
Q Consensus 163 a~~~a~~~v~~~~~~~~ 179 (277)
++.-|.|.+.-|+....
T Consensus 144 A~~aAlYKV~FK~~iGn 160 (290)
T KOG4314|consen 144 AFMAALYKVLFKMFIGN 160 (290)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999998754
No 60
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.43 E-value=0.0024 Score=57.38 Aligned_cols=138 Identities=13% Similarity=-0.014 Sum_probs=100.8
Q ss_pred hHhHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCc--hHHHHHHHHHHH
Q 023813 7 FREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSF--KFSILSRIILLS 84 (277)
Q Consensus 7 ~~~~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g 84 (277)
.++.++.+..+.++.++|.+.+.-+..+++ .|+.++..+=-+++.++..+..... +++.. .++ +.+....++.-+
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~il-e~~~i-~~~~w~~~~~~~~v~~~ 240 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAIL-ERSGI-ESIHWTSQVIGLLVGYA 240 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHhe-ehhhh-hccCCChhhHHHHHHHH
Confidence 466889999999999999999999998765 8999988888888888888777665 55443 222 333333333333
Q ss_pred HHHHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhhh-hhhhhhee
Q 023813 85 FIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAK-IIGTMVSI 147 (277)
Q Consensus 85 ~~~~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~-~~g~~~~~ 147 (277)
+.....+.+.-..++.++|....+=.-+..++..+.+.+++||+++|....+... .+|.++..
T Consensus 241 ~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~ 304 (334)
T PF06027_consen 241 LCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYN 304 (334)
T ss_pred HHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEE
Confidence 3335566666778888888877776677889999999999999999987766553 35544443
No 61
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.41 E-value=0.00098 Score=57.75 Aligned_cols=120 Identities=13% Similarity=-0.013 Sum_probs=87.1
Q ss_pred hHhHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHH
Q 023813 7 FREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFI 86 (277)
Q Consensus 7 ~~~~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 86 (277)
++..|+++.++.+.+.+.....+.|.. +++|....+=. .++.++-..+.... .++ +...|+..+-+..|++
T Consensus 134 ~~~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPq-aiGm~i~a~i~~~~-~~~----~~~~k~~~~nil~G~~ 204 (269)
T PF06800_consen 134 SNMKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQ-AIGMLIGAFIFNLF-SKK----PFFEKKSWKNILTGLI 204 (269)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHH-HHHHHHHHHHHhhc-ccc----cccccchHHhhHHHHH
Confidence 445778999999999988888888863 37887776644 33333322222221 111 1122333444566888
Q ss_pred HHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccc
Q 023813 87 GVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLS 135 (277)
Q Consensus 87 ~~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~ 135 (277)
-+..+.+++.+.+..+.+.+-.+.++.++..++.+.+++||+-++|++.
T Consensus 205 w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~ 253 (269)
T PF06800_consen 205 WGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMI 253 (269)
T ss_pred HHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHH
Confidence 7889999999999999999999999999999999999999999988664
No 62
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.40 E-value=0.0017 Score=56.30 Aligned_cols=121 Identities=14% Similarity=0.186 Sum_probs=92.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhcCCCCcccc-ccchhhHHHHHHHHHHh
Q 023813 152 WVTGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWR-LKPDVALVSIVYSAFLG 230 (277)
Q Consensus 152 ~~~G~~l~l~~a~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gv~~ 230 (277)
...|.++++.+-+.|...-...|-+ ++.| +.++..+-.+.+...+........+....++ ..+++.+......+..
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l- 81 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL-EPLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL- 81 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-ccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH-
Confidence 3579999999999999999887654 5566 5888888888888777666555432211222 2234456665655553
Q ss_pred HHHHHHHHHHHhhccCceeehhhhhhHHHHHHHHHHHHhCCcccC
Q 023813 231 PSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 231 t~~~~~~~~~~~~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~ 275 (277)
-......|.|+.++.....+|+=.++.|.+.+++|.+++||+++.
T Consensus 82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~ 126 (293)
T COG2962 82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSR 126 (293)
T ss_pred HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccH
Confidence 367888999999999999999999999999999999999999975
No 63
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.004 Score=53.56 Aligned_cols=235 Identities=13% Similarity=0.166 Sum_probs=130.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhccCCC--CC--CchHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhhhhhhhH
Q 023813 39 SYYVFVAYSYPLATLALLPLPLIFRNTTTV--VP--SFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTP 114 (277)
Q Consensus 39 ~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~a~~l~~~~P 114 (277)
.|..+..++++....+...+....++-+.+ .+ +++.+....+.-+++.-.+.-.+=..+++|.+++-=-+==+++-
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLtt 139 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTT 139 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhh
Confidence 578889999988887776665443111111 01 23222222333333332222223334556665443333333566
Q ss_pred HHHHHHHHHHhhccccccccchhh-hhhhhhheeccC----c-hhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-hhHHHH
Q 023813 115 AFTFTLAVLFRMEKLALRTLSTQA-KIIGTMVSISVS----N-WVTGGFLLAAQCFLLSIWSILLTQIINIYP-AELLVA 187 (277)
Q Consensus 115 ~~~~~l~~l~~~e~~~~~~~~~i~-~~~g~~~~~~~~----~-~~~G~~l~l~~a~~~a~~~v~~~~~~~~~~-~~~~~~ 187 (277)
+|+.++.++++|+|-+..-..+.. .+.|-.+++-.+ . .+.|.+++..++++-|+..+..|+.....+ .-+..+
T Consensus 140 vFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt 219 (347)
T KOG1442|consen 140 VFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLT 219 (347)
T ss_pred hHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhH
Confidence 799999999999998776322111 111211111111 1 368999999999999999999987654433 236888
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcccc---ccchhhHHHHHHHHHHhHHHHHHHHHHHhhccCceeehhhhhhHHHHHHHH
Q 023813 188 FLYNLFAAVIAVPLCLFAEPDLSLWR---LKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAIT 264 (277)
Q Consensus 188 ~~~~~~g~i~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gv~~t~~~~~~~~~~~~~~~~~~~s~~~~l~pv~a~i~ 264 (277)
.|..+.+.++..+...+.++-...+. ......|..+...|+++-.++|.- .+-+|-.+|-+=.+...---.-=.++
T Consensus 220 ~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvT-g~QIK~TSplThnISgTAka~aQTvl 298 (347)
T KOG1442|consen 220 AYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVT-GWQIKVTSPLTHNISGTAKAAAQTVL 298 (347)
T ss_pred HHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhhee-eEEEEecccceeeecHhHHHHHHHHH
Confidence 99999999988888776653111122 112234666666666554444432 11233444444444444444444566
Q ss_pred HHHHhCCccc
Q 023813 265 GIIFLGDTLH 274 (277)
Q Consensus 265 ~~~~l~E~~~ 274 (277)
++.+++|.-+
T Consensus 299 Av~~y~E~ks 308 (347)
T KOG1442|consen 299 AVAYYSETKS 308 (347)
T ss_pred HHHHHHHHhh
Confidence 7777887654
No 64
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.21 E-value=0.0054 Score=54.46 Aligned_cols=127 Identities=17% Similarity=0.118 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH--hhccCCCCCCc---hHHHHHHHHHHHH
Q 023813 12 LLSATVAVECTTVGLNTLFKAAASK-GLSYYVFVAYSYPLATLALLPLPLI--FRNTTTVVPSF---KFSILSRIILLSF 85 (277)
Q Consensus 12 ~~~~ll~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~g~ 85 (277)
+++.++.+.++=|...+..+...++ +.++.+..++-..++.+...+.... .++-... .+. +...+..++..++
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~-~~f~~~~p~~~~~l~~~s~ 233 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSA-IRFISAHPSVLLYLLLFSL 233 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHH-HHHHHHhHHHHHHHHHHHH
Confidence 8889999999999999999998854 7899999999999999988877766 2111110 011 1223455666777
Q ss_pred HHHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhhh
Q 023813 86 IGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAK 139 (277)
Q Consensus 86 ~~~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~ 139 (277)
.++.++.+.+.-.++.++...+++..+--+++.+++.+++++++++.+|.|+..
T Consensus 234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~l 287 (303)
T PF08449_consen 234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVL 287 (303)
T ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHH
Confidence 778888888889999999999999999999999999999999999997776653
No 65
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.12 E-value=0.0025 Score=47.96 Aligned_cols=49 Identities=8% Similarity=0.017 Sum_probs=44.8
Q ss_pred HHHhHHHHHHHHHHHhhccCceeehhhhhhHHHHHHHHHHHHhCCcccC
Q 023813 227 AFLGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 227 gv~~t~~~~~~~~~~~~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~ 275 (277)
++...+.++.++..++++.+.+.+.+..++.++++.+.|++++||++|+
T Consensus 43 ~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~ 91 (111)
T PRK15051 43 ALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSP 91 (111)
T ss_pred HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 3456678999999999999999999999999999999999999999986
No 66
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.017 Score=50.88 Aligned_cols=237 Identities=13% Similarity=0.104 Sum_probs=131.6
Q ss_pred hhhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHH
Q 023813 4 RKFFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILL 83 (277)
Q Consensus 4 ~~~~~~~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (277)
++.+++.++....+.+..+.|+++..-|.+..+ ... ... | ..... .+. .++..+ ..
T Consensus 14 ~~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r-~~~---~~~---------------r-a~~gg-~~y-l~~~~W--w~ 69 (335)
T KOG2922|consen 14 RMSSDNIIGLVLAISSSIFIGSSFILKKKGLKR-AGA---SGL---------------R-AGEGG-YGY-LKEPLW--WA 69 (335)
T ss_pred hhccCceeeeeehhhccEEEeeehhhhHHHHHH-Hhh---hcc---------------c-ccCCC-cch-hhhHHH--HH
Confidence 344566777888888899999999999987643 100 000 1 11111 122 123222 23
Q ss_pred HHHH-HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhh-hhhhhhheec---cCc-------
Q 023813 84 SFIG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQA-KIIGTMVSIS---VSN------- 151 (277)
Q Consensus 84 g~~~-~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~-~~~g~~~~~~---~~~------- 151 (277)
|++- .++...=|-+..+.|++..+-+..+.-+..++++..++|||+++....|.. .++|..+.+. .++
T Consensus 70 G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~e 149 (335)
T KOG2922|consen 70 GMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEE 149 (335)
T ss_pred HHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHH
Confidence 6654 677777778888999999999999999999999999999999999666654 4566555544 000
Q ss_pred -h----hhHH---HHHHHHHHHHHHHHHHHHHHHhhCC--hhHHHHHHHHHHHHHH-------HHHHHHhcCCCCccccc
Q 023813 152 -W----VTGG---FLLAAQCFLLSIWSILLTQIINIYP--AELLVAFLYNLFAAVI-------AVPLCLFAEPDLSLWRL 214 (277)
Q Consensus 152 -~----~~G~---~l~l~~a~~~a~~~v~~~~~~~~~~--~~~~~~~~~~~~g~i~-------~~~~~~~~~~~~~~~~~ 214 (277)
+ ..+. ...+...++.=.+. ..+++. ..+.....+.+.|... ...+-...++++ +.
T Consensus 150 l~~~~~~~~Fliy~~~iil~~~il~~~-----~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~---ql 221 (335)
T KOG2922|consen 150 VWELATEPGFLVYVIIIILIVLILIFF-----YAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNN---QL 221 (335)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHhee-----ecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCc---cc
Confidence 0 1111 11111111111111 112222 1233333333333110 011111122222 22
Q ss_pred cchhhHHHHHHHHHHhHHHHHHHHHHHhhccCceeehhhhhh-HHHHHHHHHHHHhCCcc
Q 023813 215 KPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYIAIFKPL-SVVIAAITGIIFLGDTL 273 (277)
Q Consensus 215 ~~~~~~~~l~~~gv~~t~~~~~~~~~~~~~~~~~~~s~~~~l-~pv~a~i~~~~~l~E~~ 273 (277)
..+..|..++..+. +........+.+++..+++.+++..|. -..+++.-|.++++|--
T Consensus 222 ~~~~ty~~~l~~~~-~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~ 280 (335)
T KOG2922|consen 222 FYPLTWIFLLVVAT-CVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWS 280 (335)
T ss_pred ccHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhc
Confidence 23344555444433 445566668999999999988887776 56677777888888753
No 67
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.69 E-value=0.035 Score=47.84 Aligned_cols=243 Identities=8% Similarity=0.077 Sum_probs=143.3
Q ss_pred HHHHHHHHHHh-CCCCHH--HHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 023813 25 GLNTLFKAAAS-KGLSYY--VFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIACS 101 (277)
Q Consensus 25 ~~~~~~k~~~~-~~~~p~--~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~ 101 (277)
.+...-..... .++.|. .+++.++++-.-+-+.-.... +.++ +.+++|.... ++.+-...+.+-.-++.|.
T Consensus 57 ~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~-~~k~--r~iP~rtY~~---la~~t~gtmGLsn~SlgYL 130 (367)
T KOG1582|consen 57 VYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLI-QTKR--RVIPWRTYVI---LAFLTVGTMGLSNGSLGYL 130 (367)
T ss_pred HHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEee-cccc--eecchhHhhh---hHhhhhhccccCcCccccc
Confidence 34444444333 246654 566777766544333333222 1122 3455664433 4444444444444555555
Q ss_pred ChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhh-hhhhhhheec-----cCch-hhHHHHHHHHHHHHHHHHHHHH
Q 023813 102 SPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQA-KIIGTMVSIS-----VSNW-VTGGFLLAAQCFLLSIWSILLT 174 (277)
Q Consensus 102 ~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~-~~~g~~~~~~-----~~~~-~~G~~l~l~~a~~~a~~~v~~~ 174 (277)
+=.+-.+.-.+--+=+++.+.++-+.|.++.+..+.. ..+|.+..-. .+++ ..|..+.-.+-++=|.-.-+++
T Consensus 131 NYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQE 210 (367)
T KOG1582|consen 131 NYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADAVIGNVQE 210 (367)
T ss_pred cCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHHHhhHHHH
Confidence 4333222222222223466777777777777655432 3344332221 2344 4688888888888887777777
Q ss_pred HHHhhCC-hhHHHHHHHHHHHHHHHHHHHHhcCCCCcccc---ccchhhHHHHHHHHHHhHHHHHHHHHHHhhccCceee
Q 023813 175 QIINIYP-AELLVAFLYNLFAAVIAVPLCLFAEPDLSLWR---LKPDVALVSIVYSAFLGPSFNTIIHTWGLRLKGPVYI 250 (277)
Q Consensus 175 ~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gv~~t~~~~~~~~~~~~~~~~~~~ 250 (277)
+..+..+ +..+..+|...+|.+.+.......++-.+.|. .++.+.....++.+. ++-++...-...++.-|+..+
T Consensus 211 k~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~-~gylG~~~VLalI~~fGA~~a 289 (367)
T KOG1582|consen 211 KAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL-AGYLGIVFVLALIKLFGALIA 289 (367)
T ss_pred HHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH-HhHhhHHHHHHHHHHhchhHH
Confidence 7766544 23677888888888888777776654333333 123233444444444 556677777778888999999
Q ss_pred hhhhhhHHHHHHHHHHHHhCCccc
Q 023813 251 AIFKPLSVVIAAITGIIFLGDTLH 274 (277)
Q Consensus 251 s~~~~l~pv~a~i~~~~~l~E~~~ 274 (277)
+.++..---.++++|++++.+++|
T Consensus 290 atvTTaRKavTi~lSfllFsKPfT 313 (367)
T KOG1582|consen 290 ATVTTARKAVTILLSFLLFSKPFT 313 (367)
T ss_pred HHHHHhHhHHHHHHHHHHHcCchH
Confidence 999999999999999999999887
No 68
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.49 E-value=0.0088 Score=44.91 Aligned_cols=108 Identities=17% Similarity=0.137 Sum_probs=72.2
Q ss_pred HHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHH-HHHHHHHHH
Q 023813 17 VAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFI-GVLSQIFGY 95 (277)
Q Consensus 17 l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~ 95 (277)
+++.++||..++++|.+... .++..-.. |..-.... .++ +++.. ..+. +-.+...|+
T Consensus 2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~~~~~-----Ll~----------n~~y~-----ipf~lNq~GSv~f~ 59 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQEIKF-----LLL----------NPKYI-----IPFLLNQSGSVLFF 59 (113)
T ss_pred eeehHHhcCchHHHHHHHhh-cCCccchH-HHHHHHHH-----HHH----------hHHHH-----HHHHHHHHHHHHHH
Confidence 45788999999999998653 55544331 32111111 111 12211 2333 366778999
Q ss_pred HhccccChhhHhhhh-hhhHHHHHHHHHHHhhccccccccchhhh-hhhhhhe
Q 023813 96 TGIACSSPTLSSAIS-NLTPAFTFTLAVLFRMEKLALRTLSTQAK-IIGTMVS 146 (277)
Q Consensus 96 ~~l~~~~~~~a~~l~-~~~P~~~~~l~~l~~~e~~~~~~~~~i~~-~~g~~~~ 146 (277)
+.+...+.+.+.-+. +++=++|.+.++++.+|..+++++.|... ..|+.+|
T Consensus 60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 999999999988885 67888889999888888888888888764 4565554
No 69
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.35 E-value=0.0094 Score=43.29 Aligned_cols=50 Identities=20% Similarity=0.080 Sum_probs=29.3
Q ss_pred HHHHHHHHHhccccChhhHhhh-hhhhHHHHHHHHHHHhhccccccccchh
Q 023813 88 VLSQIFGYTGIACSSPTLSSAI-SNLTPAFTFTLAVLFRMEKLALRTLSTQ 137 (277)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~a~~l-~~~~P~~~~~l~~l~~~e~~~~~~~~~i 137 (277)
..+++++..++++.+.+.+-.+ ..+..+.+++.+.+++||+++++++.++
T Consensus 40 ~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi 90 (93)
T PF00893_consen 40 GLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGI 90 (93)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHH
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhhe
Confidence 7888999999999999999555 5688999999999999999999966554
No 70
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.34 E-value=0.038 Score=41.34 Aligned_cols=57 Identities=9% Similarity=-0.003 Sum_probs=48.0
Q ss_pred HHHHHHHHHhccccChhhHhhhh-hhhHHHHHHHHHHHhhccccccccchhhhhhhhh
Q 023813 88 VLSQIFGYTGIACSSPTLSSAIS-NLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTM 144 (277)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~a~~l~-~~~P~~~~~l~~l~~~e~~~~~~~~~i~~~~g~~ 144 (277)
..++++.-.++++.|.+.+=.+- ...-+.+++.+.+++||++++.++.++..+++++
T Consensus 46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GV 103 (109)
T PRK10650 46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGM 103 (109)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 78889999999999999987664 4777888999999999999999998887654433
No 71
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.31 E-value=0.0017 Score=55.61 Aligned_cols=123 Identities=12% Similarity=0.025 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHH
Q 023813 10 ALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVL 89 (277)
Q Consensus 10 ~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 89 (277)
.++....+.+.+.=+...+..|.. ..+.+....+.+=..++.+.-.+.+... ..-+ .+..+||++..+.+|++|.+
T Consensus 190 ~~gt~aai~s~lf~asvyIilR~i-Gk~~h~~msvsyf~~i~lV~s~I~~~~i-g~~~--lP~cgkdr~l~~~lGvfgfi 265 (346)
T KOG4510|consen 190 IPGTVAAISSVLFGASVYIILRYI-GKNAHAIMSVSYFSLITLVVSLIGCASI-GAVQ--LPHCGKDRWLFVNLGVFGFI 265 (346)
T ss_pred CCchHHHHHhHhhhhhHHHHHHHh-hccccEEEEehHHHHHHHHHHHHHHhhc-ccee--cCccccceEEEEEehhhhhH
Confidence 344566666666666777777765 3457777666666666666655554333 2222 34567888888889999999
Q ss_pred HHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccch
Q 023813 90 SQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLST 136 (277)
Q Consensus 90 ~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~ 136 (277)
+|.+.-.|+|.--++..++.-++.-++..+.-.++++|.+++..|.|
T Consensus 266 gQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~G 312 (346)
T KOG4510|consen 266 GQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVG 312 (346)
T ss_pred HHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhc
Confidence 99999999999999999999999999999999999999999985443
No 72
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.25 E-value=0.00059 Score=57.66 Aligned_cols=243 Identities=15% Similarity=0.127 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHH
Q 023813 12 LLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQ 91 (277)
Q Consensus 12 ~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 91 (277)
.++..++=++.||+.+..+... +=.|.+-.-.-- ++++++....+.. .+ |..+.+.+..-++.|++=...|
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT-~GALifaiiv~~~-~~----p~~T~~~~iv~~isG~~Ws~GQ 73 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTT-LGALIFAIIVFLF-VS----PELTLTIFIVGFISGAFWSFGQ 73 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec---CCChhHhhhhcc-HHHHHHHHHHhee-ec----CccchhhHHHHHHhhhHhhhhh
Confidence 3566677889999888776542 235555443333 3444443333322 12 4456666666566666668899
Q ss_pred HHHHHhccccChhhHhhhhh-hhHHHHHHHHHHHhhccccccccc-hhhhhhhhhhee--c---c---------CchhhH
Q 023813 92 IFGYTGIACSSPTLSSAISN-LTPAFTFTLAVLFRMEKLALRTLS-TQAKIIGTMVSI--S---V---------SNWVTG 155 (277)
Q Consensus 92 ~~~~~~l~~~~~~~a~~l~~-~~P~~~~~l~~l~~~e~~~~~~~~-~i~~~~g~~~~~--~---~---------~~~~~G 155 (277)
..-+.++++.+++.+.=+.+ ++=+-+.+++++.+||.-+..+.. |....+-+++++ . + ++...|
T Consensus 74 ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkg 153 (288)
T COG4975 74 ANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKG 153 (288)
T ss_pred hhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhh
Confidence 99999999999999877755 455667888888999988876542 221111111111 1 1 123578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhCChhHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhHHHHHHHHHHhHHHH
Q 023813 156 GFLLAAQCFLLSIWSILLTQII-NIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIVYSAFLGPSFN 234 (277)
Q Consensus 156 ~~l~l~~a~~~a~~~v~~~~~~-~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~t~~~ 234 (277)
....+.|++.|-.|.+..+... +..+ .+.-.+..|+.|++... ....+. .. ....|..++ -|+ .=+.+
T Consensus 154 i~~L~iSt~GYv~yvvl~~~f~v~g~s-aiLPqAiGMv~~ali~~----~~~~~~-~~---~K~t~~nii-~G~-~Wa~G 222 (288)
T COG4975 154 IVILLISTLGYVGYVVLFQLFDVDGLS-AILPQAIGMVIGALILG----FFKMEK-RF---NKYTWLNII-PGL-IWAIG 222 (288)
T ss_pred eeeeeeeccceeeeEeeeccccccchh-hhhHHHHHHHHHHHHHh----hccccc-ch---HHHHHHHHh-hHH-HHHhh
Confidence 9999999999999999876543 1122 12223344444443322 222110 11 112233332 233 22466
Q ss_pred HHHHHHHhhccCceeehhhhhhHHHHHHHHHHHHhCCccc
Q 023813 235 TIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLH 274 (277)
Q Consensus 235 ~~~~~~~~~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~ 274 (277)
...+..+.++.|....=.++-+..+.+.+=++++++|+=|
T Consensus 223 Nl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKt 262 (288)
T COG4975 223 NLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKT 262 (288)
T ss_pred HHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCc
Confidence 6778888888888877667777788888889999999754
No 73
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=95.89 E-value=0.021 Score=43.51 Aligned_cols=64 Identities=20% Similarity=0.205 Sum_probs=52.1
Q ss_pred HHHH-HHHHHHHHHhccccChhhHhhhh-hhhHHHHHHHHHHHhhccccccccchhhhhhhhhhee
Q 023813 84 SFIG-VLSQIFGYTGIACSSPTLSSAIS-NLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTMVSI 147 (277)
Q Consensus 84 g~~~-~~~~~~~~~~l~~~~~~~a~~l~-~~~P~~~~~l~~l~~~e~~~~~~~~~i~~~~g~~~~~ 147 (277)
.+.+ +.+++++..++++.|.+.+-.+. ...-+.+++.+.++++|++++.++.++..++..++.+
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l 101 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLI 101 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 4444 88999999999999999988875 5788899999999999999999888887554433333
No 74
>PRK13499 rhamnose-proton symporter; Provisional
Probab=95.87 E-value=0.18 Score=45.53 Aligned_cols=125 Identities=14% Similarity=-0.012 Sum_probs=74.0
Q ss_pred HhHHHHHHHHHHHHHhHHHH-------HHHHHHHhCCCCHHHHHHHHHH---HHHHHHH-HHHHHh--hccCC---CCCC
Q 023813 8 REALLLSATVAVECTTVGLN-------TLFKAAASKGLSYYVFVAYSYP---LATLALL-PLPLIF--RNTTT---VVPS 71 (277)
Q Consensus 8 ~~~~~~~~ll~~~~~wg~~~-------~~~k~~~~~~~~p~~~~~~R~~---~a~l~l~-~~~~~~--~~~~~---~~~~ 71 (277)
+..|+.+.++++.+..+... +..+.+.+.+.+|.....-.+. ++..+.- .++..+ |+++. .+.+
T Consensus 171 ~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~ 250 (345)
T PRK13499 171 NLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFS 250 (345)
T ss_pred chHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcc
Confidence 44788888888888777766 5666554456777766666655 5555443 333321 11111 0011
Q ss_pred chHHHHHHH----HHHHHHHHHHHHHHHHhccccChhhHhh---hh-hhhHHHHHHHHHHHhhcccc--ccc
Q 023813 72 FKFSILSRI----ILLSFIGVLSQIFGYTGIACSSPTLSSA---IS-NLTPAFTFTLAVLFRMEKLA--LRT 133 (277)
Q Consensus 72 ~~~~~~~~~----~~~g~~~~~~~~~~~~~l~~~~~~~a~~---l~-~~~P~~~~~l~~l~~~e~~~--~~~ 133 (277)
-+++.+.+- .+.|+.=+..+.++.+|-+..+.+.+.. +. ++.-++.++-+. ++||+-+ +|+
T Consensus 251 ~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~ 321 (345)
T PRK13499 251 LAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRP 321 (345)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccc
Confidence 122223333 4445544777888899888886665555 65 555566677676 5899988 543
No 75
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=95.58 E-value=0.034 Score=41.74 Aligned_cols=61 Identities=18% Similarity=0.081 Sum_probs=49.6
Q ss_pred HHHH-HHHHHHHHHhccccChhhHhhh-hhhhHHHHHHHHHHHhhccccccccchhhhhhhhh
Q 023813 84 SFIG-VLSQIFGYTGIACSSPTLSSAI-SNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTM 144 (277)
Q Consensus 84 g~~~-~~~~~~~~~~l~~~~~~~a~~l-~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~~~g~~ 144 (277)
.+.+ .+++.++..++++.|.+.+-.+ ....-+.+++.++++++|++++.++.++..++..+
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GV 98 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGV 98 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 4444 7888999999999999998777 44777888999999999999999888877554333
No 76
>PRK11431 multidrug efflux system protein; Provisional
Probab=95.57 E-value=0.042 Score=40.81 Aligned_cols=57 Identities=11% Similarity=0.017 Sum_probs=48.2
Q ss_pred HHHHHHHHHhccccChhhHhhhhh-hhHHHHHHHHHHHhhccccccccchhhhhhhhh
Q 023813 88 VLSQIFGYTGIACSSPTLSSAISN-LTPAFTFTLAVLFRMEKLALRTLSTQAKIIGTM 144 (277)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~a~~l~~-~~P~~~~~l~~l~~~e~~~~~~~~~i~~~~g~~ 144 (277)
..++++...++++.|.+.+=.+-. ..-+.+++.+.+++||++++.++.++..++..+
T Consensus 40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GV 97 (105)
T PRK11431 40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGI 97 (105)
T ss_pred HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 788999999999999999877644 778889999999999999999988887554433
No 77
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=95.55 E-value=0.34 Score=37.86 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=74.6
Q ss_pred HHHHHHhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 023813 17 VAVECTTVGLNTLFKAAASKGL-SYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGY 95 (277)
Q Consensus 17 l~~~~~wg~~~~~~k~~~~~~~-~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 95 (277)
+.+..+-+.+..+.-..-++ . +|..-++.-+..+.+.+..+.... +++.. ...+..+++.+ .-|++|...-.+..
T Consensus 7 ~~aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~~~i~~~~~-~~~~~-~~~~~~p~w~~-lGG~lG~~~V~~~~ 82 (138)
T PF04657_consen 7 LLAGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFILLLIILLIT-GRPSL-ASLSSVPWWAY-LGGLLGVFFVLSNI 82 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHh-ccccc-chhccCChHHh-ccHHHHHHHHHHHH
Confidence 33333444444444333233 4 499999999999999998887776 33222 22222223333 36888888888899
Q ss_pred HhccccChhhHhhhhhh-hHHHHHHHHHH----Hhhccccccccchhh
Q 023813 96 TGIACSSPTLSSAISNL-TPAFTFTLAVL----FRMEKLALRTLSTQA 138 (277)
Q Consensus 96 ~~l~~~~~~~a~~l~~~-~P~~~~~l~~l----~~~e~~~~~~~~~i~ 138 (277)
..++..+++++..+.-+ +-+...++..+ ..|++++++|..+..
T Consensus 83 ~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~ 130 (138)
T PF04657_consen 83 ILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLA 130 (138)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHH
Confidence 99999999998887665 44444555553 356777777666554
No 78
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=95.34 E-value=0.038 Score=40.90 Aligned_cols=59 Identities=24% Similarity=0.162 Sum_probs=48.6
Q ss_pred HHHH-HHHHHHHHHhccccChhhHhhh-hhhhHHHHHHHHHHHhhccccccccchhhhhhh
Q 023813 84 SFIG-VLSQIFGYTGIACSSPTLSSAI-SNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIG 142 (277)
Q Consensus 84 g~~~-~~~~~~~~~~l~~~~~~~a~~l-~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~~~g 142 (277)
.+.+ ..++.+.-.+++++|.+.+=.+ ...--..+.+.++++++|+.+..++.++..++.
T Consensus 36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~Liia 96 (106)
T COG2076 36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILA 96 (106)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHH
Confidence 3344 7888999999999999998665 457788899999999999999998888765433
No 79
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=94.78 E-value=0.079 Score=47.20 Aligned_cols=101 Identities=15% Similarity=0.159 Sum_probs=70.7
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHH-HHHHHhhccCCC---C-CCchHHHHHH
Q 023813 8 REALLLSATVAVECTTVGLNTLFKAAAS---KGLSYYVFVAYSYPLATLALL-PLPLIFRNTTTV---V-PSFKFSILSR 79 (277)
Q Consensus 8 ~~~~~~~~ll~~~~~wg~~~~~~k~~~~---~~~~p~~~~~~R~~~a~l~l~-~~~~~~~~~~~~---~-~~~~~~~~~~ 79 (277)
=+..+++....+.+..+...++.|..+. .++++.++..+-.-++...++ |+.... +.... . ...+.. ...
T Consensus 160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~-~~~~~~~~~~~~~~~~-~~~ 237 (316)
T KOG1441|consen 160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYV-EGNKFVGFLTAPWFVT-FLI 237 (316)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhh-cccceeeeeccccchh-hHH
Confidence 3567899999999999999999999883 369999999999999999999 887664 32221 0 122233 333
Q ss_pred HHHHHHHHHHHHHHHHHhccccChhhHhhhh
Q 023813 80 IILLSFIGVLSQIFGYTGIACSSPTLSSAIS 110 (277)
Q Consensus 80 ~~~~g~~~~~~~~~~~~~l~~~~~~~a~~l~ 110 (277)
....+++....+..-|+.+.+++|-+=++..
T Consensus 238 ~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g 268 (316)
T KOG1441|consen 238 LLLNSVLAFLLNLSAFLVIGRTSALTYSVAG 268 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCchhhhhhc
Confidence 3334466666667777788887766555444
No 80
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=94.72 E-value=0.31 Score=42.29 Aligned_cols=224 Identities=12% Similarity=0.110 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhccc-cChhhHhhhhhhhHHHHHH
Q 023813 41 YVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQIFGYTGIAC-SSPTLSSAISNLTPAFTFT 119 (277)
Q Consensus 41 ~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~a~~l~~~~P~~~~~ 119 (277)
-.+++.+|++-+.-=+++--- -...+ ++++.|++...+..= ...+.+=.+++++ ++...=.++=.-.++.+++
T Consensus 34 NLITFaqFlFia~eGlif~sk--f~~~k-~kiplk~Y~i~V~mF---F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~ 107 (330)
T KOG1583|consen 34 NLITFAQFLFIATEGLIFTSK--FFTVK-PKIPLKDYAITVAMF---FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMI 107 (330)
T ss_pred eehHHHHHHHHHHhceeeecc--ccccC-CCCchhhhheehhee---eeeeeeccceeeecccceEEEEEecCcHHHHHH
Confidence 357778887766544443211 11222 567778776644321 2333444455554 3333334444557888999
Q ss_pred HHHHHhhccccccccchhhhh-hhhhheec-------------c-C-------chhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023813 120 LAVLFRMEKLALRTLSTQAKI-IGTMVSIS-------------V-S-------NWVTGGFLLAAQCFLLSIWSILLTQII 177 (277)
Q Consensus 120 l~~l~~~e~~~~~~~~~i~~~-~g~~~~~~-------------~-~-------~~~~G~~l~l~~a~~~a~~~v~~~~~~ 177 (277)
+++++.++|.+.+|...+..+ +|+.++-. + + .+..|..+...+.+.-|...+.+++.-
T Consensus 108 ~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y 187 (330)
T KOG1583|consen 108 LGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTY 187 (330)
T ss_pred HHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888755 77776654 0 1 134788888888888888888888776
Q ss_pred hhCC-hhHHHHHHHHHHHHHHHHHHHH----------hcCCC-CccccccchhhHHHHHHHHHHhHHHHHHHHHHHh---
Q 023813 178 NIYP-AELLVAFLYNLFAAVIAVPLCL----------FAEPD-LSLWRLKPDVALVSIVYSAFLGPSFNTIIHTWGL--- 242 (277)
Q Consensus 178 ~~~~-~~~~~~~~~~~~g~i~~~~~~~----------~~~~~-~~~~~~~~~~~~~~l~~~gv~~t~~~~~~~~~~~--- 242 (277)
|+++ ++.+..+|.=.......+...- -.|.. .+.....-+..|..++ ...+.++.=..++
T Consensus 188 ~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl-----~n~L~Qy~CikgVy~L 262 (330)
T KOG1583|consen 188 QKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLL-----FNVLTQYFCIKGVYIL 262 (330)
T ss_pred HHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHH-----HHHHHHHHHHHhhhhh
Confidence 5543 5567788876554433222210 00000 0001111123454443 2233344333333
Q ss_pred -hccCceeehhhhhhHHHHHHHHHHHHhCCcccC
Q 023813 243 -RLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 243 -~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~ 275 (277)
.+.++-++++...+--.++.++|++.++.++|+
T Consensus 263 ~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~ 296 (330)
T KOG1583|consen 263 TTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTP 296 (330)
T ss_pred hceecceEEEEeeeHHHHHHHhheeeEecCCCCH
Confidence 455666789999999999999999999999875
No 81
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=94.51 E-value=0.57 Score=36.56 Aligned_cols=108 Identities=10% Similarity=0.063 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhHHHHHHHHHHhHHHHH
Q 023813 156 GFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIVYSAFLGPSFNT 235 (277)
Q Consensus 156 ~~l~l~~a~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~t~~~~ 235 (277)
.++.+.+..+-++....+.++.++..+|..-+.+....|.+...++....++. +++......|+... -|++ ...--
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~l-G~~~V 78 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGLL-GVFFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHHH-HHHHH
Confidence 45677788888899999999988877679989999999999888887776542 12111111232222 3443 34555
Q ss_pred HHHHHHhhccCceeehhhhh-hHHHHHHHHHHH
Q 023813 236 IIHTWGLRLKGPVYIAIFKP-LSVVIAAITGII 267 (277)
Q Consensus 236 ~~~~~~~~~~~~~~~s~~~~-l~pv~a~i~~~~ 267 (277)
....+.++|.|++....... -+-+.+.+++.+
T Consensus 79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~f 111 (138)
T PF04657_consen 79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHF 111 (138)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 66788889999997555444 477777777765
No 82
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=94.31 E-value=0.19 Score=44.58 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=69.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCh-hHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhHHHHHHHHH
Q 023813 150 SNWVTGGFLLAAQCFLLSIWSILLTQIINIYPA-ELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIVYSAF 228 (277)
Q Consensus 150 ~~~~~G~~l~l~~a~~~a~~~v~~~~~~~~~~~-~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv 228 (277)
.++..|..+.+.|+++.+....++|+..++.++ +.+... . .... +. + ..|+ .|.
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~-----~-----~~~~--------l~--~-~~W~----~G~ 57 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGS-----G-----GRSY--------LR--R-PLWW----IGL 57 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-----h-----hhHH--------Hh--h-HHHH----HHH
Confidence 456789999999999999999999987665432 011000 0 0000 00 0 1122 133
Q ss_pred HhHHHHHHHHHHHhhccCceeehhhhhhHHHHHHHHHHHHhCCcccC
Q 023813 229 LGPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 229 ~~t~~~~~~~~~~~~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~ 275 (277)
...+++..+...++.-.+.+.++++..+.-++..+++..++||+++.
T Consensus 58 ~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~ 104 (300)
T PF05653_consen 58 LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTR 104 (300)
T ss_pred HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchH
Confidence 33345556667777889999999999999999999999999999874
No 83
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=93.83 E-value=0.15 Score=36.99 Aligned_cols=47 Identities=21% Similarity=0.400 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHhhccCceee-hhhhhhHHHHHHHHHHHHhCCcccCC
Q 023813 230 GPSFNTIIHTWGLRLKGPVYI-AIFKPLSVVIAAITGIIFLGDTLHLG 276 (277)
Q Consensus 230 ~t~~~~~~~~~~~~~~~~~~~-s~~~~l~pv~a~i~~~~~l~E~~~~~ 276 (277)
.-++++.++..++|+.+.+.+ +...-+..+...+.|+.++||++|+.
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~ 85 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS 85 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 557889999999999999987 55566889999999999999999874
No 84
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=93.32 E-value=0.4 Score=43.31 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=94.5
Q ss_pred hHhHHHHHHHHHHHHHhHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHHHHHHhhccCCC--CCCchHHHHHHHH
Q 023813 7 FREALLLSATVAVECTTVGLNTLFKAAASKG---LSYYVFVAYSYPLATLALLPLPLIFRNTTTV--VPSFKFSILSRII 81 (277)
Q Consensus 7 ~~~~~~~~~ll~~~~~wg~~~~~~k~~~~~~---~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~--~~~~~~~~~~~~~ 81 (277)
.+...+.++.+++++.+|..-++.|.=..++ ++-..+-.+=-++..++++|..+.. ..-.. ..-.+..+...++
T Consensus 243 ~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL-~~~~~e~F~lP~~~q~~~vv 321 (416)
T KOG2765|consen 243 SRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIIL-DFFGEERFELPSSTQFSLVV 321 (416)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHH-HHhccCcccCCCCceeEeee
Confidence 3446789999999999999999999865432 5565666666677777777665554 22111 1122344566677
Q ss_pred HHHHHH-HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchh
Q 023813 82 LLSFIG-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQ 137 (277)
Q Consensus 82 ~~g~~~-~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i 137 (277)
..++++ .+..++|.+|.-.+++-.+++=.+++....++...++.+.++++...+|-
T Consensus 322 ~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGs 378 (416)
T KOG2765|consen 322 FNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGS 378 (416)
T ss_pred HhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHH
Confidence 789999 89999999999999999998877766667777788888888888855543
No 85
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.51 E-value=1.7 Score=38.26 Aligned_cols=129 Identities=10% Similarity=-0.040 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---CCchHHHHHHHHHHHHH
Q 023813 11 LLLSATVAVECTTVGLNTLFKAAASK-GLSYYVFVAYSYPLATLALLPLPLIFRNTTTVV---PSFKFSILSRIILLSFI 86 (277)
Q Consensus 11 ~~~~~ll~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~ 86 (277)
.+++.+..-..+=|..+.-.+..... .+++.++.+.-.++..+.-....... +....+ -+.+..-++-++..+.+
T Consensus 172 ~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~q-g~~~~av~F~~~hp~~~~Di~l~s~~ 250 (327)
T KOG1581|consen 172 IGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQ-GHLLPAVSFIKEHPDVAFDILLYSTC 250 (327)
T ss_pred HhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcC-CCCchHHHHHHcChhHHHHHHHHHHh
Confidence 34444444444444444444444433 68999999999998888777664332 111110 11123335557778999
Q ss_pred HHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhhhh
Q 023813 87 GVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAKI 140 (277)
Q Consensus 87 ~~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~~ 140 (277)
|+.+|.+.|+-++.-++-+-+.+..+-=++..+++.+.++.++++.+|.++...
T Consensus 251 gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iV 304 (327)
T KOG1581|consen 251 GAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIV 304 (327)
T ss_pred hhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeee
Confidence 999999999999999999999999999999999999999999999977655433
No 86
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.04 E-value=0.2 Score=42.47 Aligned_cols=60 Identities=22% Similarity=0.257 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccch
Q 023813 77 LSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLST 136 (277)
Q Consensus 77 ~~~~~~~g~~~~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~ 136 (277)
+..+...++.+.++|.|.|.-+.+-++-+.+++..+--+|+.+.+++++.+.++.|||.|
T Consensus 241 ~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlg 300 (337)
T KOG1580|consen 241 FWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLG 300 (337)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHH
Confidence 445666788889999999999999999999999999999999999999999999997654
No 87
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.15 E-value=1.3 Score=39.25 Aligned_cols=125 Identities=18% Similarity=0.135 Sum_probs=86.0
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhhccC----CCCCCchHHHHHHHHH
Q 023813 8 REALLLSATVAVECTTVGLNTLFKAAASK-GLSYYVFVAYSYPLATLALLPLPLIFRNTT----TVVPSFKFSILSRIIL 82 (277)
Q Consensus 8 ~~~~~~~~ll~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 82 (277)
-+..+|.++......=....+..|.-.+. +.+-..++++-.+++.+.+.......++.+ ..+.......+....+
T Consensus 154 f~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~l 233 (314)
T KOG1444|consen 154 FNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLL 233 (314)
T ss_pred ecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHH
Confidence 34457888888888888888888887764 577778899999999888877765542211 1101112333555666
Q ss_pred HHHHHHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhcccccc
Q 023813 83 LSFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALR 132 (277)
Q Consensus 83 ~g~~~~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~ 132 (277)
.|+++.+-.++-+++.++.++.+-++.....-+.+.+...++.+++.++.
T Consensus 234 Scv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~ 283 (314)
T KOG1444|consen 234 SCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL 283 (314)
T ss_pred HHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechh
Confidence 77777888889999999999888877775555555555556666666665
No 88
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=88.94 E-value=2.7 Score=35.23 Aligned_cols=56 Identities=11% Similarity=-0.018 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccchhhh
Q 023813 84 SFIGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLSTQAK 139 (277)
Q Consensus 84 g~~~~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~ 139 (277)
.+.++..+.|..+-+++.++..-+....+.++++.+++.++++|+++..+|.|...
T Consensus 159 ~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~l 214 (222)
T TIGR00803 159 GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAIL 214 (222)
T ss_pred HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 44457777889999999999999999999999999999999999999997766543
No 89
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=86.98 E-value=1.7 Score=33.05 Aligned_cols=49 Identities=10% Similarity=0.272 Sum_probs=38.6
Q ss_pred HHhHHHHHHHHHHHhhccCceee-hhhhhhHHHHHHHHHHHHhCCcccCC
Q 023813 228 FLGPSFNTIIHTWGLRLKGPVYI-AIFKPLSVVIAAITGIIFLGDTLHLG 276 (277)
Q Consensus 228 v~~t~~~~~~~~~~~~~~~~~~~-s~~~~l~pv~a~i~~~~~l~E~~~~~ 276 (277)
+..-+++++++..++|+.+.+.+ +...-+--+...+.|++++||++|+.
T Consensus 37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~ 86 (120)
T PRK10452 37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM 86 (120)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 33557888999999999888864 33356788888999999999999863
No 90
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=86.31 E-value=2 Score=32.19 Aligned_cols=46 Identities=17% Similarity=0.168 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHhhccCceee-hhhhhhHHHHHHHHHHHHhCCcccC
Q 023813 230 GPSFNTIIHTWGLRLKGPVYI-AIFKPLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 230 ~t~~~~~~~~~~~~~~~~~~~-s~~~~l~pv~a~i~~~~~l~E~~~~ 275 (277)
.-++++.++..++|+.+.+.+ +...-+.-+...+.|++++||++|+
T Consensus 39 ~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~ 85 (110)
T PRK09541 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL 85 (110)
T ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 446777788888888777753 3335567777888999999999875
No 91
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=84.03 E-value=0.087 Score=44.85 Aligned_cols=118 Identities=18% Similarity=0.094 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHH
Q 023813 10 ALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVL 89 (277)
Q Consensus 10 ~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 89 (277)
.|+...++...+-+-..-+..+.---++.+...--+.-+.++++++... +. . ++. .|+...-++.|+.=+.
T Consensus 151 kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~~~-----~~--~-~~~-~K~t~~nii~G~~Wa~ 221 (288)
T COG4975 151 KKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILGFF-----KM--E-KRF-NKYTWLNIIPGLIWAI 221 (288)
T ss_pred hhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHhhc-----cc--c-cch-HHHHHHHHhhHHHHHh
Confidence 3455555555554443333333321234555544455556666543331 11 1 222 3444455567887788
Q ss_pred HHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccccch
Q 023813 90 SQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRTLST 136 (277)
Q Consensus 90 ~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~~~~ 136 (277)
.+.+++.+-+..+.+++=-+.++..+..++-+.+++|||-++|++..
T Consensus 222 GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~ 268 (288)
T COG4975 222 GNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVY 268 (288)
T ss_pred hHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhh
Confidence 99999999998888888888888888999999999999999998753
No 92
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=82.91 E-value=13 Score=27.71 Aligned_cols=47 Identities=11% Similarity=0.085 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHhhccCcee-ehhhhhhHHHHHHHHHHHHhCCcccCC
Q 023813 230 GPSFNTIIHTWGLRLKGPVY-IAIFKPLSVVIAAITGIIFLGDTLHLG 276 (277)
Q Consensus 230 ~t~~~~~~~~~~~~~~~~~~-~s~~~~l~pv~a~i~~~~~l~E~~~~~ 276 (277)
.-+++|++...++|+.+.+. -+...-+--+.+.+.+++++||++|+.
T Consensus 44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~ 91 (109)
T PRK10650 44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK 91 (109)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 44788889999999988885 466666778888999999999999863
No 93
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=82.79 E-value=3.3 Score=30.74 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHhhccCcee-ehhhhhhHHHHHHHHHHHHhCCcccC
Q 023813 230 GPSFNTIIHTWGLRLKGPVY-IAIFKPLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 230 ~t~~~~~~~~~~~~~~~~~~-~s~~~~l~pv~a~i~~~~~l~E~~~~ 275 (277)
.-..+|.+...++|+.+.+. -++.+-.--+...+.|++++||++++
T Consensus 39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~ 85 (106)
T COG2076 39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSL 85 (106)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCH
Confidence 44678888888888888774 46677778888899999999999875
No 94
>PRK11431 multidrug efflux system protein; Provisional
Probab=81.48 E-value=4.3 Score=30.10 Aligned_cols=47 Identities=23% Similarity=0.374 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHhhccCcee-ehhhhhhHHHHHHHHHHHHhCCcccCC
Q 023813 230 GPSFNTIIHTWGLRLKGPVY-IAIFKPLSVVIAAITGIIFLGDTLHLG 276 (277)
Q Consensus 230 ~t~~~~~~~~~~~~~~~~~~-~s~~~~l~pv~a~i~~~~~l~E~~~~~ 276 (277)
.-+.+|++...++|+.+.+. -+...-+--+.+.+.|++++||++|+.
T Consensus 38 ~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~ 85 (105)
T PRK11431 38 AMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA 85 (105)
T ss_pred HHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 44677788888888877774 455566777888899999999998863
No 95
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.28 E-value=37 Score=26.91 Aligned_cols=108 Identities=12% Similarity=-0.096 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 023813 13 LSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLSQI 92 (277)
Q Consensus 13 ~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 92 (277)
.+..+++.++-.....+.-..-+..=+|..-.+.-+..+.+++..+.+.+ +++.. ....++.-++...-|++|+.+-.
T Consensus 7 ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~-~~~~~-~a~~~~~pwW~~~GG~lGa~~vt 84 (150)
T COG3238 7 LLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIK-QGHPG-LAAVASAPWWAWIGGLLGAIFVT 84 (150)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHh-cCCCc-hhhccCCchHHHHccchhhhhhh
Confidence 34444444444444444443323212599999999999999988887775 33222 11112212222334566654444
Q ss_pred HHHHhccccChhhHhhhhh-hhHHHHHHHHH
Q 023813 93 FGYTGIACSSPTLSSAISN-LTPAFTFTLAV 122 (277)
Q Consensus 93 ~~~~~l~~~~~~~a~~l~~-~~P~~~~~l~~ 122 (277)
.-.......++++...+.- -+-+...++..
T Consensus 85 ~s~~l~p~lGa~~t~~l~i~gQli~glliD~ 115 (150)
T COG3238 85 SSILLAPRLGAATTIALVIAGQLIMGLLIDH 115 (150)
T ss_pred hhHHhccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 4445556666555444333 23333344443
No 96
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.88 E-value=45 Score=26.39 Aligned_cols=111 Identities=12% Similarity=0.079 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhHHHHHHHHHHhHHH
Q 023813 154 TGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIVYSAFLGPSF 233 (277)
Q Consensus 154 ~G~~l~l~~a~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~t~~ 233 (277)
...+..+.+..+-...+-.+.|+.+..++|..-..+....|++.+..+..+.++.+ .++......|+... -|+++ ++
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~-~~a~~~~~pwW~~~-GG~lG-a~ 81 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHP-GLAAVASAPWWAWI-GGLLG-AI 81 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCC-chhhccCCchHHHH-ccchh-hh
Confidence 34567778888888888889999988887888888999999988888777654432 12211111222211 12222 11
Q ss_pred HHHHHHHHhhccCcee-ehhhhhhHHHHHHHHHHH
Q 023813 234 NTIIHTWGLRLKGPVY-IAIFKPLSVVIAAITGII 267 (277)
Q Consensus 234 ~~~~~~~~~~~~~~~~-~s~~~~l~pv~a~i~~~~ 267 (277)
=-+.-....+|.|++. ..+...-+-+.+.+++-+
T Consensus 82 ~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~f 116 (150)
T COG3238 82 FVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHF 116 (150)
T ss_pred hhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 1122445567777774 555555677777776654
No 97
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=69.98 E-value=21 Score=30.30 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhccCCC---CCCchHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhhhhhhh
Q 023813 37 GLSYYVFVAYSYPLATLALLPLPLIFRNTTTV---VPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLT 113 (277)
Q Consensus 37 ~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~a~~l~~~~ 113 (277)
+.--.+-.++..+++..++..+.... +.... ...++.-.+...++.|++..+-.+|--|.++-+++.+-+.+..+.
T Consensus 182 Nf~d~dtmfYnNllslPiL~~~s~~~-edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALN 260 (309)
T COG5070 182 NFKDFDTMFYNNLLSLPILLSFSFLF-EDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALN 260 (309)
T ss_pred ccchhhHHHHhhhHHHHHHHHHHHHh-ccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhh
Confidence 35567788999999999998887766 32111 122333345567777888777778888999999888877777776
Q ss_pred HHHHHHHHHHHhhcccccc
Q 023813 114 PAFTFTLAVLFRMEKLALR 132 (277)
Q Consensus 114 P~~~~~l~~l~~~e~~~~~ 132 (277)
-.-.++-+.+++.|+.+..
T Consensus 261 Klp~alaGlvffdap~nf~ 279 (309)
T COG5070 261 KLPIALAGLVFFDAPVNFL 279 (309)
T ss_pred hChHHHhhhhhcCCchhHH
Confidence 5555666666666666554
No 98
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=63.11 E-value=79 Score=27.98 Aligned_cols=54 Identities=6% Similarity=-0.134 Sum_probs=41.8
Q ss_pred hhHhHHHHHHHHHHHHHhHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHH
Q 023813 6 FFREALLLSATVAVECTTVGLNTLFKAAA-SKGLSYYVFVAYSYPLATLALLPLP 59 (277)
Q Consensus 6 ~~~~~~~~~~ll~~~~~wg~~~~~~k~~~-~~~~~p~~~~~~R~~~a~l~l~~~~ 59 (277)
.++...+.++.+.+.++-+..++.=...+ .++++|.+.+.+.-.++.+++..+.
T Consensus 171 ~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~ 225 (372)
T KOG3912|consen 171 YSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLA 225 (372)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHH
Confidence 34556788899999999999998864433 4589999999999988866665444
No 99
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.10 E-value=7.2 Score=34.72 Aligned_cols=102 Identities=20% Similarity=0.183 Sum_probs=69.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhHHHHHHHHHH
Q 023813 150 SNWVTGGFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPLCLFAEPDLSLWRLKPDVALVSIVYSAFL 229 (277)
Q Consensus 150 ~~~~~G~~l~l~~a~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~ 229 (277)
.++..|.++.+.|++.-....++.|+-.++... ..-. .++. .+..--...| +.|++
T Consensus 17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~----~~~r--------------a~~g--g~~yl~~~~W----w~G~l 72 (335)
T KOG2922|consen 17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA----SGLR--------------AGEG--GYGYLKEPLW----WAGML 72 (335)
T ss_pred cCceeeeeehhhccEEEeeehhhhHHHHHHHhh----hccc--------------ccCC--CcchhhhHHH----HHHHH
Confidence 445678899999999888888887776655321 1000 0011 1111111112 34566
Q ss_pred hHHHHHHHHHHHhhccCceeehhhhhhHHHHHHHHHHHHhCCcccC
Q 023813 230 GPSFNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLHL 275 (277)
Q Consensus 230 ~t~~~~~~~~~~~~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~~ 275 (277)
..++|-...+-+..-.+++.+++++.+.-+..++++..+++|++++
T Consensus 73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~ 118 (335)
T KOG2922|consen 73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNL 118 (335)
T ss_pred HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777779999999999999999999999999999874
No 100
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=62.92 E-value=98 Score=26.50 Aligned_cols=122 Identities=14% Similarity=0.064 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHHHHHHHHHhhccCC-CCCCchHHHHHHHHHHHHH
Q 023813 9 EALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYS-YPLATLALLPLPLIFRNTTT-VVPSFKFSILSRIILLSFI 86 (277)
Q Consensus 9 ~~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R-~~~a~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ 86 (277)
...++.+.+.++++=|...+..-..+++.-.|...-=.+ ...+.++-++....+ ++.. .+..+ ...+-.....-++
T Consensus 112 ~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~-~~~~~~~~g~-f~G~~~~~~~~i~ 189 (244)
T PF04142_consen 112 PLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLS-DGSAISESGF-FHGYSWWVWIVIF 189 (244)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcc-cccccccCCc-hhhcchHHHHHHH
Confidence 356788888888899999999977777643444333333 444444444443333 2211 10111 1111111222222
Q ss_pred H-HHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhcccccc
Q 023813 87 G-VLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALR 132 (277)
Q Consensus 87 ~-~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~ 132 (277)
. +.+-...-.-++|.+.-.=..-....-+.+.+++..+++.+++..
T Consensus 190 ~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~ 236 (244)
T PF04142_consen 190 LQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLS 236 (244)
T ss_pred HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchH
Confidence 2 444455556678887776666677788888999999999999987
No 101
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=54.12 E-value=49 Score=24.56 Aligned_cols=101 Identities=18% Similarity=0.118 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHH
Q 023813 13 LSATVAVECTTVGLNTLFKAAASKGLSYYVF--VAYSYPLATLALLPLPLIFRNTTTVVPSFKFSILSRIILLSFIGVLS 90 (277)
Q Consensus 13 ~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~--~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 90 (277)
...++.+...||..++++|.+-. +.+..-- .-+|. ..+ +-+. ..++++.+.. =.++-..
T Consensus 5 ~~~lvaVgllWG~Tnplirrgs~-g~~~v~~~~~k~~~-----------~lq-e~~t--l~l~w~Y~iP----FllNqcg 65 (125)
T KOG4831|consen 5 MDKLVAVGLLWGATNPLIRRGSL-GWDKVKSSSRKIMI-----------ALQ-EMKT--LFLNWEYLIP----FLLNQCG 65 (125)
T ss_pred HHHHHHHHHHHccccHHHHHHHh-hHhhccCchHHHHH-----------HHH-HHHH--HHHhHHHHHH----HHHHHhh
Confidence 34567889999999999998743 3322111 01111 001 1111 1123333332 2233445
Q ss_pred HHHHHHhccccChhhHhhhhh-hhHHHHHHHHHHHhhcccccc
Q 023813 91 QIFGYTGIACSSPTLSSAISN-LTPAFTFTLAVLFRMEKLALR 132 (277)
Q Consensus 91 ~~~~~~~l~~~~~~~a~~l~~-~~P~~~~~l~~l~~~e~~~~~ 132 (277)
...||+-+++++-+.+.=+.+ ++-.|+.+.+..+..|-...+
T Consensus 66 Saly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~ 108 (125)
T KOG4831|consen 66 SALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGL 108 (125)
T ss_pred HHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccce
Confidence 678888899988777665544 566788888886654444444
No 102
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=51.04 E-value=16 Score=30.37 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhccCceeehhhhhhHHHHHHHHHHHHhCCccc
Q 023813 233 FNTIIHTWGLRLKGPVYIAIFKPLSVVIAAITGIIFLGDTLH 274 (277)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~s~~~~l~pv~a~i~~~~~l~E~~~ 274 (277)
.+.+.|..+++++.++.++....-.--|-.+++++.+||++.
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~ 106 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFM 106 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchh
Confidence 345788999999999999999999999999999999999875
No 103
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=43.67 E-value=83 Score=23.63 Aligned_cols=45 Identities=13% Similarity=0.114 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHhhccCceeehhhh-hhHHHHHHHHHHHHhCCccc
Q 023813 230 GPSFNTIIHTWGLRLKGPVYIAIFK-PLSVVIAAITGIIFLGDTLH 274 (277)
Q Consensus 230 ~t~~~~~~~~~~~~~~~~~~~s~~~-~l~pv~a~i~~~~~l~E~~~ 274 (277)
....+-..|++.+++.|-+.+.+.. .+.-+++++.++++.+|..+
T Consensus 50 lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~ 95 (113)
T PF10639_consen 50 LNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVIS 95 (113)
T ss_pred HHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccc
Confidence 3345667899999999999988885 88899999999776665544
No 104
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=38.48 E-value=10 Score=33.13 Aligned_cols=31 Identities=10% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHhhCChh-HHHHHHHHHH-HHHHHHHHHHhcC
Q 023813 176 IINIYPAE-LLVAFLYNLF-AAVIAVPLCLFAE 206 (277)
Q Consensus 176 ~~~~~~~~-~~~~~~~~~~-g~i~~~~~~~~~~ 206 (277)
+.+++.+. +++.+++..+ =++++.+++....
T Consensus 128 lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L~ 160 (381)
T PF05297_consen 128 LLRELGASFWTILAFCLAFLLAIVLLIIAVLLH 160 (381)
T ss_dssp ---------------------------------
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34554431 3444443322 2445555555544
No 105
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=38.03 E-value=92 Score=25.81 Aligned_cols=18 Identities=6% Similarity=-0.176 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 023813 12 LLSATVAVECTTVGLNTL 29 (277)
Q Consensus 12 ~~~~ll~~~~~wg~~~~~ 29 (277)
++..+++.++..|.....
T Consensus 112 gi~tli~~~i~~G~~~~~ 129 (206)
T PF06570_consen 112 GIITLILVSIVGGLVFYF 129 (206)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 444444444444443333
No 106
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.41 E-value=2.4e+02 Score=24.97 Aligned_cols=123 Identities=18% Similarity=0.111 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhhcc-CCC-CCCc-hHHHHHHHHHHHH
Q 023813 10 ALLLSATVAVECTTVGLNTLFKAAASK-GLSYYVFVAYSYPLATLALLPLPLIFRNT-TTV-VPSF-KFSILSRIILLSF 85 (277)
Q Consensus 10 ~~~~~~ll~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~-~~~-~~~~-~~~~~~~~~~~g~ 85 (277)
..+.++.+.+.+.=+.+.+..|..... +=....+.++-...+.+..+|...+.++- +.+ .+.+ ..+-|....+.|+
T Consensus 184 ~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsgl 263 (347)
T KOG1442|consen 184 WIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGL 263 (347)
T ss_pred hhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHH
Confidence 457888888999999999999965332 11235678888899999999988765111 111 0222 3444555667788
Q ss_pred HHHHHHHHHHHhccccChhhHhhhhhhhHHHHHHHHHHHhhcccccc
Q 023813 86 IGVLSQIFGYTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALR 132 (277)
Q Consensus 86 ~~~~~~~~~~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~ 132 (277)
+|..-.+.-.+-++.|+|-+=.+=...-...=++++..+.+|..+.-
T Consensus 264 fgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~l 310 (347)
T KOG1442|consen 264 FGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGL 310 (347)
T ss_pred HHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhh
Confidence 88433344455666666544333332333344567777777765544
No 107
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=32.86 E-value=2.8e+02 Score=24.02 Aligned_cols=93 Identities=18% Similarity=0.146 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCchHHHHHHHHHHHHH
Q 023813 9 EALLLSATVAVECTTVGLNTLFKAAASKGL-SYYVFVAYSYPLATLALLPLPLIFRNT-TTVVPSFKFSILSRIILLSFI 86 (277)
Q Consensus 9 ~~~~~~~ll~~~~~wg~~~~~~k~~~~~~~-~p~~~~~~R~~~a~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ 86 (277)
+.+-...++++++.=+......|...++.. +....+.+-..+.++++...-..+ ++ +++..+++.+| .+..|++
T Consensus 78 ~~~~~~~iiiatip~~v~G~~~~~~i~~~~~~~~~~v~~~Li~~g~lL~~~~~~~-~~~~~~~~~~~~~d---al~iGl~ 153 (259)
T PF02673_consen 78 DRRLLLLIIIATIPTGVVGLLFKDFIEALFFSSPLVVAIALIITGLLLWLADRLK-RKGRKDEEDITFKD---ALIIGLA 153 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHc-cCCCCCcccCCHHH---HHHHHHH
Confidence 344555666777777777766666555544 244556666666666655544333 22 11113445544 3445665
Q ss_pred HHHHHHHHHHhccccChhhHhh
Q 023813 87 GVLSQIFGYTGIACSSPTLSSA 108 (277)
Q Consensus 87 ~~~~~~~~~~~l~~~~~~~a~~ 108 (277)
.+++ ..-|++..+++.++.
T Consensus 154 Q~lA---l~PGiSRSG~Ti~~~ 172 (259)
T PF02673_consen 154 QGLA---LIPGISRSGATITAG 172 (259)
T ss_pred HHcc---cCCCcChHHHHHHHH
Confidence 5433 456777766554433
No 108
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=32.17 E-value=1.2e+02 Score=26.21 Aligned_cols=56 Identities=7% Similarity=-0.117 Sum_probs=41.9
Q ss_pred hHhHHHHHHHHHHHHHhHHHHHHHHHHHhCC-------CCHHHHHHHHH----HHHHHHHHHHHHHh
Q 023813 7 FREALLLSATVAVECTTVGLNTLFKAAASKG-------LSYYVFVAYSY----PLATLALLPLPLIF 62 (277)
Q Consensus 7 ~~~~~~~~~ll~~~~~wg~~~~~~k~~~~~~-------~~p~~~~~~R~----~~a~l~l~~~~~~~ 62 (277)
++|.-+....+++.+++|++++-.+..-+++ -++...++-.+ +.+.+.+..++..+
T Consensus 179 ~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~ 245 (254)
T PF07857_consen 179 KKRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIK 245 (254)
T ss_pred cchhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhh
Confidence 3567788889999999999999999986553 25556666654 56677777887775
No 109
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=27.58 E-value=2.1e+02 Score=25.33 Aligned_cols=96 Identities=17% Similarity=0.190 Sum_probs=68.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhcc-CCC--CCCchHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhhhhhhh
Q 023813 37 GLSYYVFVAYSYPLATLALLPLPLIFRNT-TTV--VPSFKFSILSRIILLSFIGVLSQIFGYTGIACSSPTLSSAISNLT 113 (277)
Q Consensus 37 ~~~p~~~~~~R~~~a~l~l~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~a~~l~~~~ 113 (277)
.-+..+.+++...++.+.++......++- +.+ -.+-+.|.....+..+..+.+++.+...=++.-++..++.+...-
T Consensus 217 ~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaR 296 (367)
T KOG1582|consen 217 PASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTAR 296 (367)
T ss_pred CCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhH
Confidence 45667888888888888877666543110 000 012246677777778888877777777777778888888888888
Q ss_pred HHHHHHHHHHHhhcccccc
Q 023813 114 PAFTFTLAVLFRMEKLALR 132 (277)
Q Consensus 114 P~~~~~l~~l~~~e~~~~~ 132 (277)
-..+.+++.+++.++++-.
T Consensus 297 KavTi~lSfllFsKPfT~q 315 (367)
T KOG1582|consen 297 KAVTILLSFLLFSKPFTEQ 315 (367)
T ss_pred hHHHHHHHHHHHcCchHHH
Confidence 8899999999887777664
No 110
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=25.45 E-value=77 Score=27.64 Aligned_cols=65 Identities=5% Similarity=-0.143 Sum_probs=49.0
Q ss_pred hhHhHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchH
Q 023813 6 FFREALLLSATVAVECTTVGLNTLFKAAASKGLSYYVFVAYSYPLATLALLPLPLIFRNTTTVVPSFKF 74 (277)
Q Consensus 6 ~~~~~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~ 74 (277)
..+..|+.++.++++.+++.+++.-...+++ .|-.++...--++++++-.+=... +|++. ..+.|
T Consensus 161 gsnp~~GD~lvi~GATlYaVSNv~EEflvkn-~d~~elm~~lgLfGaIIsaIQ~i~--~~~~~-~tl~w 225 (336)
T KOG2766|consen 161 GSNPVKGDFLVIAGATLYAVSNVSEEFLVKN-ADRVELMGFLGLFGAIISAIQFIF--ERHHV-STLHW 225 (336)
T ss_pred CCCCccCcEEEEecceeeeeccccHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHhh--hccce-eeEee
Confidence 4556788888889999999999999887654 899999999989998887665333 44444 34444
No 111
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=24.41 E-value=62 Score=25.06 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=33.3
Q ss_pred HhhccccccccchhhhhhhhhheeccCchhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 023813 124 FRMEKLALRTLSTQAKIIGTMVSISVSNWVTGGFLLAAQCFLLSIWSILLTQIINIY 180 (277)
Q Consensus 124 ~~~e~~~~~~~~~i~~~~g~~~~~~~~~~~~G~~l~l~~a~~~a~~~v~~~~~~~~~ 180 (277)
+-.||++-- |..+.++-++..+|-++.-+-.+.|++|.+..|.+-++.
T Consensus 85 LVDeRlste---------GTGL~lGlsn~~LgwIL~gVf~lIWslY~~~~~~l~ede 132 (138)
T PF07123_consen 85 LVDERLSTE---------GTGLPLGLSNNLLGWILLGVFGLIWSLYFVYTSTLDEDE 132 (138)
T ss_pred HHHHHhcCC---------CccccccccCchhHHHHHHHHHHHHHHHHhhccccCCCc
Confidence 347887764 333444434556788888888899999999988765443
No 112
>PF09945 DUF2177: Predicted membrane protein (DUF2177); InterPro: IPR018687 This family of putative membrane proteins has no known function.
Probab=22.30 E-value=3.5e+02 Score=20.75 Aligned_cols=44 Identities=9% Similarity=0.124 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHH
Q 023813 156 GFLLAAQCFLLSIWSILLTQIINIYPAELLVAFLYNLFAAVIAVPL 201 (277)
Q Consensus 156 ~~l~l~~a~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~ 201 (277)
.--++.+.++|+.|..-+-...|+.| ...+..=...|++.....
T Consensus 78 ~~GallGl~~YgtYdlTN~Atlk~W~--~~~~liD~~WG~~lt~~s 121 (128)
T PF09945_consen 78 LYGALLGLFAYGTYDLTNLATLKDWP--LKVTLIDIAWGTFLTALS 121 (128)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHCCCC--ccHHHHHHhHHHHHHHHH
Confidence 34478889999999999888889886 455555555555544433
No 113
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=20.93 E-value=4.8e+02 Score=21.50 Aligned_cols=18 Identities=33% Similarity=0.255 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHhhccc
Q 023813 112 LTPAFTFTLAVLFRMEKL 129 (277)
Q Consensus 112 ~~P~~~~~l~~l~~~e~~ 129 (277)
..|....++.+...+||.
T Consensus 161 ~~~~~~pll~~~~~~~r~ 178 (214)
T PF11139_consen 161 SLPALLPLLAYLVAPERA 178 (214)
T ss_pred HHHHHHHHHHHHHhHHHH
Confidence 557777777777766665
Done!