Query 023813
Match_columns 277
No_of_seqs 131 out of 1186
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 13:13:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 97.9 1E-05 3.5E-10 62.1 5.2 51 226-276 35-86 (137)
2 2i68_A Protein EMRE; transmemb 97.9 1.2E-05 4.1E-10 61.8 4.9 59 82-140 34-94 (137)
3 3b5d_A Multidrug transporter E 97.9 2.2E-05 7.4E-10 58.1 5.7 61 82-142 34-96 (110)
4 3b5d_A Multidrug transporter E 97.4 0.0002 6.8E-09 52.8 5.3 51 226-276 35-86 (110)
5 2l2t_A Receptor tyrosine-prote 5.3 5.4E+02 0.019 14.9 3.1 8 55-62 28-35 (44)
6 2ks1_B Epidermal growth factor 5.2 5.5E+02 0.019 14.8 3.1 11 52-62 26-36 (44)
7 2hac_A T-cell surface glycopro 4.2 5.3E+02 0.018 13.9 1.8 15 118-132 17-31 (33)
8 3tij_A NUPC family protein; me 3.9 1.1E+03 0.036 21.0 4.6 16 250-265 302-317 (424)
9 1gl4_A Nidogen-1, entactin; im 3.2 4.2E+02 0.014 22.2 1.3 37 95-132 88-124 (285)
10 1q90_R Cytochrome B6-F complex 3.1 9.1E+02 0.031 14.2 3.6 18 70-87 7-24 (49)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.93 E-value=1e-05 Score=62.14 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=37.6
Q ss_pred HHHHhHHHHHHHHHHHhhccCceeehhh-hhhHHHHHHHHHHHHhCCcccCC
Q 023813 226 SAFLGPSFNTIIHTWGLRLKGPVYIAIF-KPLSVVIAAITGIIFLGDTLHLG 276 (277)
Q Consensus 226 ~gv~~t~~~~~~~~~~~~~~~~~~~s~~-~~l~pv~a~i~~~~~l~E~~~~~ 276 (277)
+++++++++|.+|++++|+.+++.+.++ ..+.|+++.++|++++||++|+.
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~ 86 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP 86 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 5677889999999999999999999998 89999999999999999999874
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.89 E-value=1.2e-05 Score=61.77 Aligned_cols=59 Identities=19% Similarity=0.070 Sum_probs=41.3
Q ss_pred HHHHHH-HHHHHHHHHhccccChhhHhhh-hhhhHHHHHHHHHHHhhccccccccchhhhh
Q 023813 82 LLSFIG-VLSQIFGYTGIACSSPTLSSAI-SNLTPAFTFTLAVLFRMEKLALRTLSTQAKI 140 (277)
Q Consensus 82 ~~g~~~-~~~~~~~~~~l~~~~~~~a~~l-~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~~ 140 (277)
+.+++. .++++++..++++.+++.+..+ .++.|++++++++++++|++++.++.|+..+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LI 94 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLI 94 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 356666 8899999999999999999888 8999999999999999999999987776644
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.86 E-value=2.2e-05 Score=58.06 Aligned_cols=61 Identities=18% Similarity=0.064 Sum_probs=53.2
Q ss_pred HHHHHH-HHHHHHHHHhccccChhhHhhh-hhhhHHHHHHHHHHHhhccccccccchhhhhhh
Q 023813 82 LLSFIG-VLSQIFGYTGIACSSPTLSSAI-SNLTPAFTFTLAVLFRMEKLALRTLSTQAKIIG 142 (277)
Q Consensus 82 ~~g~~~-~~~~~~~~~~l~~~~~~~a~~l-~~~~P~~~~~l~~l~~~e~~~~~~~~~i~~~~g 142 (277)
..+++. .+++.++..++++.|.+.+..+ ..+.|+++++.+++++||+++++++.|+..++.
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~ 96 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICA 96 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 345555 8899999999999999999888 799999999999999999999998888775533
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.41 E-value=0.0002 Score=52.78 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=46.3
Q ss_pred HHHHhHHHHHHHHHHHhhccCceeehhh-hhhHHHHHHHHHHHHhCCcccCC
Q 023813 226 SAFLGPSFNTIIHTWGLRLKGPVYIAIF-KPLSVVIAAITGIIFLGDTLHLG 276 (277)
Q Consensus 226 ~gv~~t~~~~~~~~~~~~~~~~~~~s~~-~~l~pv~a~i~~~~~l~E~~~~~ 276 (277)
.+++..+++|.++.+++|+.+.+.+.++ ..+.|+++.+.+++++||++|+.
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~ 86 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP 86 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH
Confidence 4566788999999999999999999888 89999999999999999999863
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=5.34 E-value=5.4e+02 Score=14.87 Aligned_cols=8 Identities=13% Similarity=-0.172 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q 023813 55 LLPLPLIF 62 (277)
Q Consensus 55 l~~~~~~~ 62 (277)
+..+.+.+
T Consensus 28 ~~~~~~~R 35 (44)
T 2l2t_A 28 LTFAVYVR 35 (44)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 33333434
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=5.21 E-value=5.5e+02 Score=14.80 Aligned_cols=11 Identities=18% Similarity=-0.125 Sum_probs=4.3
Q ss_pred HHHHHHHHHHh
Q 023813 52 TLALLPLPLIF 62 (277)
Q Consensus 52 ~l~l~~~~~~~ 62 (277)
.+.+..+.+.+
T Consensus 26 ii~~~~~~~~R 36 (44)
T 2ks1_B 26 VVALGIGLFMR 36 (44)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 33333343444
No 7
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=4.22 E-value=5.3e+02 Score=13.94 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=8.9
Q ss_pred HHHHHHHhhcccccc
Q 023813 118 FTLAVLFRMEKLALR 132 (277)
Q Consensus 118 ~~l~~l~~~e~~~~~ 132 (277)
.++..++.|||++..
T Consensus 17 ii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 17 VILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhhcc
Confidence 344455677777653
No 8
>3tij_A NUPC family protein; membrane transporter, nucleoside transporter, drug transport uridine, nucleosides, membrane protein; HET: URI DMU; 2.44A {Vibrio cholerae}
Probab=3.87 E-value=1.1e+03 Score=20.95 Aligned_cols=16 Identities=19% Similarity=0.137 Sum_probs=7.5
Q ss_pred ehhhhhhHHHHHHHHH
Q 023813 250 IAIFKPLSVVIAAITG 265 (277)
Q Consensus 250 ~s~~~~l~pv~a~i~~ 265 (277)
=.+++|+--+++-++|
T Consensus 302 q~IlGyif~P~A~lmG 317 (424)
T 3tij_A 302 EMLLGWLFAPLAFLIG 317 (424)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHHhC
Confidence 3344555444444444
No 9
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A
Probab=3.22 E-value=4.2e+02 Score=22.17 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=30.6
Q ss_pred HHhccccChhhHhhhhhhhHHHHHHHHHHHhhcccccc
Q 023813 95 YTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALR 132 (277)
Q Consensus 95 ~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~ 132 (277)
+.+++.++......+..+.|+. ..++|++-||.-...
T Consensus 88 ytais~Ip~~~G~~l~~L~~ig-~~igWlfA~e~~~~~ 124 (285)
T 1gl4_A 88 YTAISTIPETVGYSLLPLAPIG-GIIGWMFAVEQDGFK 124 (285)
T ss_dssp EEEEESCCHHHHGGGTTCTHHH-HHHHHHTCEECTTCC
T ss_pred EEEeccCChhhchhhhhhhhhc-cceeeeeecccCccc
Confidence 4678899999999999999955 788899988876654
No 10
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=3.14 E-value=9.1e+02 Score=14.20 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=14.0
Q ss_pred CCchHHHHHHHHHHHHHH
Q 023813 70 PSFKFSILSRIILLSFIG 87 (277)
Q Consensus 70 ~~~~~~~~~~~~~~g~~~ 87 (277)
+..+||+++..+..|..+
T Consensus 7 pdm~RRqfln~l~~G~~a 24 (49)
T 1q90_R 7 PDMNKRNIMNLILAGGAG 24 (49)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHH
Confidence 567889888887777766
Done!