Query 023813
Match_columns 277
No_of_seqs 131 out of 1186
Neff 8.8
Searched_HMMs 13730
Date Mon Mar 25 13:13:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023813.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023813hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 11.3 89 0.0065 14.5 2.8 18 154-171 3-20 (27)
2 d1gl4a1 d.22.1.2 (A:399-631) D 3.3 1.9E+02 0.014 21.5 1.3 38 95-133 42-79 (233)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 2.8 3.6E+02 0.026 12.5 2.2 14 261-274 15-28 (30)
4 d1xioa_ f.13.1.1 (A:) Sensory 2.0 1.1E+03 0.079 16.3 17.6 39 88-126 48-93 (226)
5 d1wpga4 f.33.1.1 (A:1-124,A:24 1.9 1.5E+03 0.11 17.5 11.5 65 37-101 264-337 (472)
6 d1v54c_ f.25.1.1 (C:) Mitochon 1.8 1E+03 0.074 17.1 3.9 15 17-31 161-175 (259)
7 d1ppjg_ f.23.13.1 (G:) Ubiquin 1.7 8.5E+02 0.062 14.2 3.0 22 222-244 44-65 (75)
8 d1w53a_ a.186.1.2 (A:) Phospho 1.6 8.4E+02 0.061 14.6 2.4 23 26-48 30-52 (84)
9 d3cx5h1 f.23.13.1 (H:2-94) Ubi 1.4 1.1E+03 0.08 14.3 3.0 21 223-244 55-75 (93)
10 d1h2sa_ f.13.1.1 (A:) Sensory 1.2 1.6E+03 0.12 15.3 14.4 36 88-123 48-90 (225)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.27 E-value=89 Score=14.52 Aligned_cols=18 Identities=6% Similarity=0.093 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 023813 154 TGGFLLAAQCFLLSIWSI 171 (277)
Q Consensus 154 ~G~~l~l~~a~~~a~~~v 171 (277)
+|.+.+-++.++||.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 577777778888887753
No 2
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.31 E-value=1.9e+02 Score=21.51 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=30.2
Q ss_pred HHhccccChhhHhhhhhhhHHHHHHHHHHHhhccccccc
Q 023813 95 YTGIACSSPTLSSAISNLTPAFTFTLAVLFRMEKLALRT 133 (277)
Q Consensus 95 ~~~l~~~~~~~a~~l~~~~P~~~~~l~~l~~~e~~~~~~ 133 (277)
+.+++.+++..+..+..+.|+.. .++|+|-||.-....
T Consensus 42 ytaIs~IP~~~G~~L~~L~~ig~-~igWlFA~e~~~a~N 79 (233)
T d1gl4a1 42 YTAISTIPETVGYSLLPLAPIGG-IIGWMFAVEQDGFKN 79 (233)
T ss_dssp EEEEESCCHHHHGGGTTCTHHHH-HHHHHTCEECTTCCC
T ss_pred EEEccCCChhHhhhhhhhhhhcC-ceeeeEEeecCCccC
Confidence 35788899999999999999664 568889888877653
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.77 E-value=3.6e+02 Score=12.53 Aligned_cols=14 Identities=21% Similarity=0.171 Sum_probs=6.8
Q ss_pred HHHHHHHHhCCccc
Q 023813 261 AAITGIIFLGDTLH 274 (277)
Q Consensus 261 a~i~~~~~l~E~~~ 274 (277)
+..+-.+++.|++.
T Consensus 15 ~lfffaiffreppr 28 (30)
T d2axtt1 15 ALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHTSCCCC
T ss_pred HHHHHHHHhcCCCC
Confidence 33333455666553
No 4
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=2.02 E-value=1.1e+03 Score=16.33 Aligned_cols=39 Identities=13% Similarity=-0.095 Sum_probs=17.1
Q ss_pred HHHHHHHHHhccccChhhHhhh-------hhhhHHHHHHHHHHHhh
Q 023813 88 VLSQIFGYTGIACSSPTLSSAI-------SNLTPAFTFTLAVLFRM 126 (277)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~a~~l-------~~~~P~~~~~l~~l~~~ 126 (277)
+.++.....+...++.+...+. .-++|+....+..+...
T Consensus 48 ~~~Y~~ma~~~g~~~~~~~~v~~~RYiDW~lTtPlll~~l~l~~~~ 93 (226)
T d1xioa_ 48 GLAYMAMAIDQGKVEAAGQIAHYARYIDWMVTTPLLLLSLSWTAMQ 93 (226)
T ss_dssp HHHHHHHHHC---------CTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCeeeecCceeeHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4444444444444433333322 23789888777766543
No 5
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=1.88 E-value=1.5e+03 Score=17.49 Aligned_cols=65 Identities=8% Similarity=-0.119 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-------Hh-hccCCCCCCchHHHHHHHHHHHHHH-HHHHHHHHHhcccc
Q 023813 37 GLSYYVFVAYSYPLATLALLPLPL-------IF-RNTTTVVPSFKFSILSRIILLSFIG-VLSQIFGYTGIACS 101 (277)
Q Consensus 37 ~~~p~~~~~~R~~~a~l~l~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~ 101 (277)
-++|.++.+.=+..-.+.-..+.. .+ ++|+.+.+.++++.+.++...|... ......+++...+.
T Consensus 264 pl~~~qILwinli~d~lpaiaL~~ep~d~~iM~~~Pr~~~~~li~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~ 337 (472)
T d1wpga4 264 ALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYA 337 (472)
T ss_dssp SCCHHHHHHHHHTTTHHHHHHHTTCCCCSGGGGSCCCCTTCCSSCTHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred cccHHHHHHHHHHhHHHHHHHHhcCCCchhhhcCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999998877654432222211 01 1122222335666667766666655 45555556655443
No 6
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.79 E-value=1e+03 Score=17.08 Aligned_cols=15 Identities=20% Similarity=0.067 Sum_probs=6.7
Q ss_pred HHHHHHhHHHHHHHH
Q 023813 17 VAVECTTVGLNTLFK 31 (277)
Q Consensus 17 l~~~~~wg~~~~~~k 31 (277)
+..+++-|..+...|
T Consensus 161 l~~t~~lg~~Fl~~q 175 (259)
T d1v54c_ 161 LFITITLGVYFTLLQ 175 (259)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444444
No 7
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.73 E-value=8.5e+02 Score=14.16 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=15.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhc
Q 023813 222 SIVYSAFLGPSFNTIIHTWGLRL 244 (277)
Q Consensus 222 ~l~~~gv~~t~~~~~~~~~~~~~ 244 (277)
-+++.+. ..+++|..|.|+-++
T Consensus 44 ~~l~v~P-Pfi~~Y~iy~W~~~~ 65 (75)
T d1ppjg_ 44 CILRVAP-PFVAFYLVYTWGTQE 65 (75)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHH
T ss_pred hceEEcC-HHHHHHHHHHHHHHH
Confidence 3445544 778999999998754
No 8
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=1.57 E-value=8.4e+02 Score=14.55 Aligned_cols=23 Identities=0% Similarity=-0.016 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHH
Q 023813 26 LNTLFKAAASKGLSYYVFVAYSY 48 (277)
Q Consensus 26 ~~~~~k~~~~~~~~p~~~~~~R~ 48 (277)
.-=++|.+++++++|-.++-..-
T Consensus 30 ~~~fsre~iek~IsPEeIV~iHk 52 (84)
T d1w53a_ 30 AQKFSRKTIEHQIPPEEIISIHR 52 (84)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH
Confidence 44567777888999999887654
No 9
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=1.41 E-value=1.1e+03 Score=14.27 Aligned_cols=21 Identities=10% Similarity=0.031 Sum_probs=14.9
Q ss_pred HHHHHHHhHHHHHHHHHHHhhc
Q 023813 223 IVYSAFLGPSFNTIIHTWGLRL 244 (277)
Q Consensus 223 l~~~gv~~t~~~~~~~~~~~~~ 244 (277)
++|.+. ..+++|..|.|+-++
T Consensus 55 ~lyv~P-Pfi~~Y~iy~Wa~~~ 75 (93)
T d3cx5h1 55 FLYVLI-PAGIYWYWWKNGNEY 75 (93)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHH
T ss_pred ceEEcc-hHHHHHHHHHHHHHH
Confidence 344444 678999999998764
No 10
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=1.22 E-value=1.6e+03 Score=15.34 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=17.8
Q ss_pred HHHHHHHHHhccccChhhHhhh-------hhhhHHHHHHHHHH
Q 023813 88 VLSQIFGYTGIACSSPTLSSAI-------SNLTPAFTFTLAVL 123 (277)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~a~~l-------~~~~P~~~~~l~~l 123 (277)
+.++.....+..+++.+...+. .-++|+....+..+
T Consensus 48 a~~Y~~m~~g~g~~~~~~~~i~~~RYvDW~lT~PLll~~l~ll 90 (225)
T d1h2sa_ 48 AVAYVVMALGVGWVPVAERTVFAPRYIDWILTTPLIVYFLGLL 90 (225)
T ss_dssp HHHHHHHHTTCSEECCTTSCEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCccccccceehHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433444555554444432 22789876555443
Done!