BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023814
(276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana In Complex With C-Terminal Peptide
From Arabidopsis Serine Acetyltransferase
Length = 320
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/264 (65%), Positives = 211/264 (79%)
Query: 5 CEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGL 64
I KDVTELIG+TP+VYLNNV +GCV R+AAKLEMM+PCSSVKDRI +SMI DAE KGL
Sbjct: 1 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGL 60
Query: 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124
I PG++VLIE TSGNTG+GLAF AA++GYKLII MP++ S ERRIIL A G E+ L DPA
Sbjct: 61 IKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 120
Query: 125 VGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXX 184
G +G + K EEIL +TPNGY+L QFENPANP+IHYETTGPEIW +GGK+D F
Sbjct: 121 KGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGT 180
Query: 185 XXXXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDE 244
++LKE+N N+K+YG+EP ESA+L+GG+PG H IQGIGAG IP VL+V ++DE
Sbjct: 181 GGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDE 240
Query: 245 VITVSSEEAIETSKLLALKEGLLV 268
V+ VSS+E+I+ ++ LALKEGLLV
Sbjct: 241 VVQVSSDESIDMARQLALKEGLLV 264
>pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana
Length = 322
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/264 (65%), Positives = 211/264 (79%)
Query: 5 CEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGL 64
I KDVTELIG+TP+VYLNNV +GCV R+AAKLEMM+PCSSVKDRI +SMI DAE KGL
Sbjct: 3 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGL 62
Query: 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124
I PG++VLIE TSGNTG+GLAF AA++GYKLII MP++ S ERRIIL A G E+ L DPA
Sbjct: 63 IKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122
Query: 125 VGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXX 184
G +G + K EEIL +TPNGY+L QFENPANP+IHYETTGPEIW +GGK+D F
Sbjct: 123 KGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGT 182
Query: 185 XXXXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDE 244
++LKE+N N+K+YG+EP ESA+L+GG+PG H IQGIGAG IP VL+V ++DE
Sbjct: 183 GGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDE 242
Query: 245 VITVSSEEAIETSKLLALKEGLLV 268
V+ VSS+E+I+ ++ LALKEGLLV
Sbjct: 243 VVQVSSDESIDMARQLALKEGLLV 266
>pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana
O-Acetylserine Sulfhydrylase K46a Mutant
Length = 322
Score = 360 bits (925), Expect = e-100, Method: Compositional matrix adjust.
Identities = 171/264 (64%), Positives = 210/264 (79%)
Query: 5 CEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGL 64
I KDVTELIG+TP+VYLNNV +GCV R+AAKLEMM+PCSSV DRI +SMI DAE KGL
Sbjct: 3 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVADRIGFSMISDAEKKGL 62
Query: 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124
I PG++VLIE TSGNTG+GLAF AA++GYKLII MP++ S ERRIIL A G E+ L DPA
Sbjct: 63 IKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122
Query: 125 VGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXX 184
G +G + K EEIL +TPNGY+L QFENPANP+IHYETTGPEIW +GGK+D F
Sbjct: 123 KGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGT 182
Query: 185 XXXXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDE 244
++LKE+N N+K+YG+EP ESA+L+GG+PG H IQGIGAG IP VL+V ++DE
Sbjct: 183 GGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDE 242
Query: 245 VITVSSEEAIETSKLLALKEGLLV 268
V+ VSS+E+I+ ++ LALKEGLLV
Sbjct: 243 VVQVSSDESIDMARQLALKEGLLV 266
>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
pdb|4AEC|B Chain B, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
Length = 430
Score = 357 bits (917), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 169/266 (63%), Positives = 208/266 (78%)
Query: 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDK 62
D I +V++LIG TPMVYLN++ GCVA IAAKLE+M+PC SVKDRI YSM+ DAE K
Sbjct: 109 DGLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQK 168
Query: 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122
G I+PGK+VL+E TSGNTGIGLAFIAASRGY+LI+ MP++ S+ERR++L+A GAE+ L D
Sbjct: 169 GFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTD 228
Query: 123 PAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXX 182
PA G G V+K EEIL TP+ Y+L QF+NPANP+IHYETTGPEIW+D+ GKVD F
Sbjct: 229 PAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGI 288
Query: 183 XXXXXXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAML 242
RF+KEKNP +V G+EP+ES +L+GG+PG H IQGIGAG IP LD ++
Sbjct: 289 GTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIM 348
Query: 243 DEVITVSSEEAIETSKLLALKEGLLV 268
DEVI +SSEEAIET+K LALKEGL+V
Sbjct: 349 DEVIAISSEEAIETAKQLALKEGLMV 374
>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
Length = 344
Score = 319 bits (817), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 149/264 (56%), Positives = 195/264 (73%)
Query: 5 CEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGL 64
IKK V++LIG TP+VYLN V +GC A +A K EMMQP +S+KDR AY+MI DAE+K L
Sbjct: 23 TNIKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIKDRPAYAMITDAEEKNL 82
Query: 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124
ITPGKT LIE TSGN GI +AF+AA +GYK+++ MPS S+ERR+ +RA GAE+ L DPA
Sbjct: 83 ITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142
Query: 125 VGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXX 184
G G VKK E+L TPN ++L QF NPAN ++H+ETTGPEIW D+ G+VD F
Sbjct: 143 KGMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGS 202
Query: 185 XXXXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDE 244
++LK KNPN+K+YG+EPSES VLNGG+PG H I G G G P +LD+ ++++
Sbjct: 203 GGTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKPDILDLDVMEK 262
Query: 245 VITVSSEEAIETSKLLALKEGLLV 268
V+ VSSE+A+ +++LALKEGL+V
Sbjct: 263 VLEVSSEDAVNMARVLALKEGLMV 286
>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|E Chain E, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|F Chain F, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
Length = 344
Score = 317 bits (812), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 148/264 (56%), Positives = 194/264 (73%)
Query: 5 CEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGL 64
IKK V++LIG TP+VYLN V +GC A +A K EMMQP +S+ DR AY+MI DAE+K L
Sbjct: 23 TNIKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIADRPAYAMITDAEEKNL 82
Query: 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124
ITPGKT LIE TSGN GI +AF+AA +GYK+++ MPS S+ERR+ +RA GAE+ L DPA
Sbjct: 83 ITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142
Query: 125 VGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXX 184
G G VKK E+L TPN ++L QF NPAN ++H+ETTGPEIW D+ G+VD F
Sbjct: 143 KGMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGS 202
Query: 185 XXXXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDE 244
++LK KNPN+K+YG+EPSES VLNGG+PG H I G G G P +LD+ ++++
Sbjct: 203 GGTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKPDILDLDVMEK 262
Query: 245 VITVSSEEAIETSKLLALKEGLLV 268
V+ VSSE+A+ +++LALKEGL+V
Sbjct: 263 VLEVSSEDAVNMARVLALKEGLMV 286
>pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine
Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc
Baa-535 M
Length = 314
Score = 255 bits (652), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 127/262 (48%), Positives = 173/262 (66%), Gaps = 1/262 (0%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I +++T+LIG TP+V L V DG A + AKLE P S+KDRI +MI AE GLI
Sbjct: 7 IAENITQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGLIK 66
Query: 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVG 126
P T+++E TSGNTGI LA ++A+RGYK ++ MP T SIERR++LRA GAE+ L A G
Sbjct: 67 P-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGAEG 125
Query: 127 FEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXX 186
G + K EE+ +I QFENPANP +H TT E+W D+ GKVD F
Sbjct: 126 MAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGVGTGG 185
Query: 187 XXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246
+ +K++ P+ + +EP+ S VL+GGQ G H IQGIGAG +PPVLD+A++DEVI
Sbjct: 186 TITGVAQVIKQRRPSAQFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDLALVDEVI 245
Query: 247 TVSSEEAIETSKLLALKEGLLV 268
TV +++A+E ++ +A +EGLLV
Sbjct: 246 TVGNDDALELARRMATEEGLLV 267
>pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine
Sulfhydrylase (oass) From Mycobacterium Tuberculosis In
Complex With The Reaction Intermediate
Alpha-aminoacrylate
Length = 313
Score = 254 bits (650), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 127/262 (48%), Positives = 171/262 (65%), Gaps = 1/262 (0%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I +D+T+LIG TP+V L V DG VA I AKLE P +SVKDRI +M++ AE GLI
Sbjct: 6 IAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIK 65
Query: 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVG 126
P T+++E TSGNTGI LA + A+RGY+ ++ MP T S+ERR++LRA GAE+ L A G
Sbjct: 66 P-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADG 124
Query: 127 FEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXX 186
G + K EE+ ++ QFENPANP IH TT E+W D+ GKVD
Sbjct: 125 MSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGG 184
Query: 187 XXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246
+ +KE+ P+ + +EP+ S VL+GGQ G H IQGIGAG +PPVLD ++DE+I
Sbjct: 185 TITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEII 244
Query: 247 TVSSEEAIETSKLLALKEGLLV 268
TV +E+A+ ++ LA +EGLLV
Sbjct: 245 TVGNEDALNVARRLAREEGLLV 266
>pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis
pdb|2Q3C|A Chain A, 2.1 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis In Complex With The Inhibitory Peptide Dfsi
Length = 313
Score = 253 bits (645), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 126/262 (48%), Positives = 170/262 (64%), Gaps = 1/262 (0%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I +D+T+LIG TP+V L V DG VA I AKLE P +SV DRI +M++ AE GLI
Sbjct: 6 IAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVXDRIGVAMLQAAEQAGLIK 65
Query: 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVG 126
P T+++E TSGNTGI LA + A+RGY+ ++ MP T S+ERR++LRA GAE+ L A G
Sbjct: 66 P-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADG 124
Query: 127 FEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXX 186
G + K EE+ ++ QFENPANP IH TT E+W D+ GKVD
Sbjct: 125 MSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGG 184
Query: 187 XXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246
+ +KE+ P+ + +EP+ S VL+GGQ G H IQGIGAG +PPVLD ++DE+I
Sbjct: 185 TITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEII 244
Query: 247 TVSSEEAIETSKLLALKEGLLV 268
TV +E+A+ ++ LA +EGLLV
Sbjct: 245 TVGNEDALNVARRLAREEGLLV 266
>pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|B Chain B, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|C Chain C, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|D Chain D, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
Length = 314
Score = 252 bits (643), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 125/261 (47%), Positives = 171/261 (65%), Gaps = 1/261 (0%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I +++ +LIG TP+V L V DG A + AKLE P S+KDRI +MI AE GLI
Sbjct: 7 IAENIAQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGLIK 66
Query: 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVG 126
P T+++E TSGNTGI LA ++A+RGYK ++ MP T SIERR++LRA GAE+ L A G
Sbjct: 67 P-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGAEG 125
Query: 127 FEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXX 186
G + K EE+ +I QFENPANP +H TT E+W D+ GKVD F
Sbjct: 126 MAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGVGTGG 185
Query: 187 XXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246
+ +K++ P+ + +EP+ S VL+GGQ G H IQGIGAG +PPVLD+A++DEVI
Sbjct: 186 TITGVAQVIKQRRPSAQFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDLALVDEVI 245
Query: 247 TVSSEEAIETSKLLALKEGLL 267
TV +++A+E ++ +A +EGLL
Sbjct: 246 TVGNDDALELARRMATEEGLL 266
>pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From
Geobacillus Kaustophilus Hta426
Length = 308
Score = 229 bits (585), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 122/241 (50%), Positives = 161/241 (66%), Gaps = 4/241 (1%)
Query: 11 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKT 70
+TELIG TP V LN +VD A + KLE M P SSVKDRIA +MI+ AE G + PG T
Sbjct: 8 ITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGDT 67
Query: 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGF 130
+ +E TSGNTGIGLA +AA++GYK +++MP T S+ERR +LRA GAE+ L A G G
Sbjct: 68 I-VEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQGMRGA 126
Query: 131 VKKGEEILNRTPNGYIL-GQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXX 189
+ K EE++ +GY + QF+N ANPEIH TTG EI G ++DAF
Sbjct: 127 IAKAEELVRE--HGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGGTIT 184
Query: 190 XXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVS 249
+ L+E PNIK+Y +EP++S VL+GG+PG H IQGIGAG +P +LD ++ D VITV+
Sbjct: 185 GAGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGAGFVPDILDTSIYDGVITVT 244
Query: 250 S 250
+
Sbjct: 245 T 245
>pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1OAS|B Chain B, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1FCJ|A Chain A, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|B Chain B, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|C Chain C, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|D Chain D, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
Length = 322
Score = 224 bits (572), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 124/272 (45%), Positives = 175/272 (64%), Gaps = 13/272 (4%)
Query: 5 CEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGL 64
+I +D + IGHTP+V LN + +G RI AK+E P SVK RI +MI DAE +G+
Sbjct: 1 SKIYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGV 57
Query: 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124
+ PG L+E T+GNTGI LA++AA+RGYKL + MP T SIERR +L+ALGA + L + A
Sbjct: 58 LKPG-VELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGA 116
Query: 125 VGFEGFVKKGEEILNRTPNGY-ILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXX 183
G +G ++K EEI+ P Y +L QF NPANPEIH +TTGPEIW D+ G+VD F
Sbjct: 117 KGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVG 176
Query: 184 XXXXXXXXXRFLK--EKNPNIKVYGIEPSESAVLNGG------QPGKHLIQGIGAGVIPP 235
R++K + ++ +EP++S V+ +PG H IQGIGAG IP
Sbjct: 177 TGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPG 236
Query: 236 VLDVAMLDEVITVSSEEAIETSKLLALKEGLL 267
LD+ ++D+V+ +++EEAI T++ L +EG+L
Sbjct: 237 NLDLKLIDKVVGITNEEAISTARRLMEEEGIL 268
>pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
pdb|1D6S|B Chain B, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
Length = 322
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/272 (45%), Positives = 174/272 (63%), Gaps = 13/272 (4%)
Query: 5 CEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGL 64
+I +D + IGHTP+V LN + +G RI AK+E P SV RI +MI DAE +G+
Sbjct: 1 SKIYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVACRIGANMIWDAEKRGV 57
Query: 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124
+ PG L+E T+GNTGI LA++AA+RGYKL + MP T SIERR +L+ALGA + L + A
Sbjct: 58 LKPG-VELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGA 116
Query: 125 VGFEGFVKKGEEILNRTPNGY-ILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXX 183
G +G ++K EEI+ P Y +L QF NPANPEIH +TTGPEIW D+ G+VD F
Sbjct: 117 KGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVG 176
Query: 184 XXXXXXXXXRFLK--EKNPNIKVYGIEPSESAVLNGG------QPGKHLIQGIGAGVIPP 235
R++K + ++ +EP++S V+ +PG H IQGIGAG IP
Sbjct: 177 TGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPG 236
Query: 236 VLDVAMLDEVITVSSEEAIETSKLLALKEGLL 267
LD+ ++D+V+ +++EEAI T++ L +EG+L
Sbjct: 237 NLDLKLIDKVVGITNEEAISTARRLMEEEGIL 268
>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase
pdb|4AIR|B Chain B, Leishmania Major Cysteine Synthase
Length = 354
Score = 218 bits (555), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 109/261 (41%), Positives = 160/261 (61%), Gaps = 1/261 (0%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
+ + + +LIG TP +YLN + + A++ K+E P +SVKDR+ +++ AE +G +
Sbjct: 32 VAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKLI 90
Query: 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVG 126
PGK+V++E +SGNTG+ LA + A RGYK+II MP + S+ERR +LR GAEV L A+G
Sbjct: 91 PGKSVVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALG 150
Query: 127 FEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXX 186
+G V ++I+ PN + QF N IH ETTGPEIW + VD F
Sbjct: 151 MKGAVTMAKKIVTANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGG 210
Query: 187 XXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246
R LK+ + ++ +EP ES VL+GG+PG H IQGIG G +P VLD +++DEV
Sbjct: 211 TLTGVARALKKMGSHARIVAVEPMESPVLSGGKPGAHKIQGIGPGFVPDVLDRSLIDEVF 270
Query: 247 TVSSEEAIETSKLLALKEGLL 267
V+ ++AIET+ L +G+
Sbjct: 271 CVAGDDAIETALKLTRSDGVF 291
>pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase
pdb|2ECO|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Methylvalerate
pdb|2ECQ|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 3-Hydroxylactate
pdb|2EFY|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
pdb|2EFY|B Chain B, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
Length = 304
Score = 216 bits (551), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 119/259 (45%), Positives = 166/259 (64%), Gaps = 10/259 (3%)
Query: 15 IGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK-TVLI 73
IG TP+V L VV+ +A + KLE + P S+KDR A+ MIKDAE++G++ PG V++
Sbjct: 7 IGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIV 66
Query: 74 ELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA----VGFEG 129
E TSGNTGIGLA IAASRGY+LI+ MP+ S ER+ +L+A GAE+ L DP E
Sbjct: 67 EPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREE 126
Query: 130 FVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXX 189
++ EE+ P+ QF+NPAN HYETTGPE++ G++DAF
Sbjct: 127 ALRLKEELGAFMPD-----QFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTIT 181
Query: 190 XXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVS 249
R+LKE+ P++KV +EP+ S VL+GG+ G+H QG+G G IP LD+++LD VI V
Sbjct: 182 GVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVW 241
Query: 250 SEEAIETSKLLALKEGLLV 268
E+A ++ LA +EGL +
Sbjct: 242 EEDAFPLARRLAREEGLFL 260
>pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani In Complex With Designed
Tetrapeptide
pdb|3TBH|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase In
Complex With Octapeptide Derived From Serine Acetyl
Transferase Of Leishmania Donovani
pdb|3SPX|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani
Length = 334
Score = 216 bits (550), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/261 (40%), Positives = 161/261 (61%), Gaps = 1/261 (0%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
+ + + +LIG TP +YLN + + A++ K+E P +SV DR+ +++ AE +G +
Sbjct: 11 VAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVXDRLGFAIYDKAEKEGKLI 69
Query: 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVG 126
PGK++++E +SGNTG+ LA + A RGYK+II MP + S+ERR +LR GAEV L A+G
Sbjct: 70 PGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALG 129
Query: 127 FEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXX 186
+G V ++I+ PN + QF N IH ETTGPEIW + VD F
Sbjct: 130 MKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGG 189
Query: 187 XXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246
R LK+ + ++ +EP+ES VL+GG+PG H IQGIG G +P VLD +++DEV+
Sbjct: 190 TLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGIGPGFVPDVLDRSLIDEVL 249
Query: 247 TVSSEEAIETSKLLALKEGLL 267
V+ ++AIET+ L +G+
Sbjct: 250 CVAGDDAIETALKLTRSDGVF 270
>pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
pdb|3FCA|B Chain B, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
Length = 291
Score = 208 bits (529), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 123/257 (47%), Positives = 159/257 (61%), Gaps = 9/257 (3%)
Query: 13 ELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVL 72
LIG TP+V L D +RI KLE P SVKDR A MI DAE +GL+ G +
Sbjct: 4 RLIGSTPIVRL----DSIDSRIXLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG---I 56
Query: 73 IELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVK 132
+E TSGN GI +A I A RG+++I+ MP T S+ERR +L+ LGAE+ L +G +G V+
Sbjct: 57 VEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVE 116
Query: 133 KGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXX 192
K EI +R ++L QFENP N H TTGPEI ++DAF
Sbjct: 117 KALEI-SRETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVG 175
Query: 193 RFLKEKNPN-IKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSE 251
R LK N +K+ +EP++S VL+GGQPGKH IQGIGAG +P +LD +++DEVITV E
Sbjct: 176 RVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDE 235
Query: 252 EAIETSKLLALKEGLLV 268
EA E ++ LA KEGLLV
Sbjct: 236 EAYEMARYLAKKEGLLV 252
>pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
Length = 303
Score = 207 bits (528), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 123/257 (47%), Positives = 159/257 (61%), Gaps = 9/257 (3%)
Query: 13 ELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVL 72
LIG TP+V L D +RI KLE P SVKDR A MI DAE +GL+ G +
Sbjct: 16 RLIGSTPIVRL----DSIDSRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG---I 68
Query: 73 IELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVK 132
+E TSGN GI +A I A RG+++I+ MP T S+ERR +L+ LGAE+ L +G +G V+
Sbjct: 69 VEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVE 128
Query: 133 KGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXX 192
K EI +R ++L QFENP N H TTGPEI ++DAF
Sbjct: 129 KALEI-SRETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVG 187
Query: 193 RFLKEKNPN-IKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSE 251
R LK N +K+ +EP++S VL+GGQPGKH IQGIGAG +P +LD +++DEVITV E
Sbjct: 188 RVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDE 247
Query: 252 EAIETSKLLALKEGLLV 268
EA E ++ LA KEGLLV
Sbjct: 248 EAYEMARYLAKKEGLLV 264
>pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex
pdb|3IQG|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnwni
pdb|3IQH|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnydi
pdb|3IQI|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mneni
Length = 316
Score = 184 bits (468), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 114/269 (42%), Positives = 159/269 (59%), Gaps = 11/269 (4%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I D + IG+TP+V L + G + K+E P SV RI +M+ AE G +T
Sbjct: 3 IYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVXCRIGANMVWQAEKDGTLT 60
Query: 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVG 126
GK + ++ TSGNTGI LA++AA+RGYK+ + MP T S+ER+ +L LG + L + A G
Sbjct: 61 KGKEI-VDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKG 119
Query: 127 FEGFVKKGEEILNRTPNGYI-LGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXX 185
+G + K EEI+ P+ Y+ L QFENPANP+IH ETTGPEIW D+ GKVD
Sbjct: 120 MKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTG 179
Query: 186 XXXXXXXRFLK-EKNPNIKVYGIEPSESAVLNGG------QPGKHLIQGIGAGVIPPVLD 238
R +K + I +EP ES V++ +PG H IQGIGAG IP LD
Sbjct: 180 GSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLD 239
Query: 239 VAMLDEVITVSSEEAIETSKLLALKEGLL 267
++++D V TV S+ A+ T++ L +EG+L
Sbjct: 240 LSIIDRVETVDSDTALATARRLMAEEGIL 268
>pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|B Chain B, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|C Chain C, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|D Chain D, Crystal Structure Of Cysteine Synthase B
Length = 303
Score = 176 bits (447), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 143/255 (56%), Gaps = 9/255 (3%)
Query: 13 ELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVL 72
+ IG+TP+V L + + + KLE P SVKDR A SMI +AE +G I PG VL
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VL 64
Query: 73 IELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVK 132
IE TSGNTGI LA IAA +GY++ ++MP S ERR +RA GAE+ L G EG
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 133 KGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXX 192
E+ NR G +L QF NP NP HY TTGPEIW +GG++ F
Sbjct: 125 LALEMANRG-EGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 193 RFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEE 252
RF++E++ + + G++P E + + G I+ +P + + +++DEV+ + +
Sbjct: 184 RFMREQSKPVTIVGLQPEEGSSIPG-------IRRWPTEYLPGIFNASLVDEVLDIHQRD 236
Query: 253 AIETSKLLALKEGLL 267
A T + LA++EG+
Sbjct: 237 AENTMRELAVREGIF 251
>pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O-
Acetylserine Sulfhydrylase
Length = 303
Score = 174 bits (441), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 98/255 (38%), Positives = 142/255 (55%), Gaps = 9/255 (3%)
Query: 13 ELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVL 72
+ IG+TP+V L + + + KLE P SV DR A SMI +AE +G I PG VL
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGEIKPGD-VL 64
Query: 73 IELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVK 132
IE TSGNTGI LA IAA +GY++ ++MP S ERR +RA GAE+ L G EG
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 133 KGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXX 192
E+ NR G +L QF NP NP HY TTGPEIW +GG++ F
Sbjct: 125 LALEMANRG-EGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 193 RFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEE 252
RF++E++ + + G++P E + + G I+ +P + + +++DEV+ + +
Sbjct: 184 RFMREQSKPVTIVGLQPEEGSSIPG-------IRRWPTEYLPGIFNASLVDEVLDIHQRD 236
Query: 253 AIETSKLLALKEGLL 267
A T + LA++EG+
Sbjct: 237 AENTMRELAVREGIF 251
>pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase B
Length = 303
Score = 173 bits (439), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 142/255 (55%), Gaps = 9/255 (3%)
Query: 13 ELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVL 72
+ IG+TP+V L + + + KLE P SV DR A SMI +AE +G I PG VL
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGRIKPGD-VL 64
Query: 73 IELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVK 132
IE TSGNTGI LA IAA +GY++ ++MP S ERR +RA GAE+ L G EG
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 133 KGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXX 192
E+ NR G +L QF NP NP+ HY TTGPEIW +GG++ F
Sbjct: 125 LALEMANRG-EGKLLDQFNNPDNPKAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 193 RFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEE 252
F++E++ + + G++P E + + G I+ +P + + +++DEV+ + +
Sbjct: 184 EFMREQSKPVTIVGLQPEEGSSIPG-------IRRWPTEYLPGIFNASLVDEVLDIHQRD 236
Query: 253 AIETSKLLALKEGLL 267
A T + LA++EG+
Sbjct: 237 AENTMRELAVREGIF 251
>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|B Chain B, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|C Chain C, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|D Chain D, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|E Chain E, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|F Chain F, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
Length = 363
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/272 (39%), Positives = 145/272 (53%), Gaps = 11/272 (4%)
Query: 6 EIKKDVTELIGHTPMVYLNNVVD--GCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKG 63
+I D+ + IG TPMV +N + G + AK E SVKDRI+ MI+DAE G
Sbjct: 32 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDG 91
Query: 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123
+ PG T+ IE TSGNTGIGLA AA RGY+ II+MP S E+ +LRALGAE+
Sbjct: 92 TLKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPT 150
Query: 124 AVGF---EGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXX 180
F E V + N PN +IL Q+ N +NP HY+TT EI GK+D
Sbjct: 151 NARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVA 210
Query: 181 XXXXXXXXXXXXRFLKEKNPNIKVYGIEP-----SESAVLNGGQPGKHLIQGIGAGVIPP 235
R LKEK P ++ G++P +E LN + + ++GIG IP
Sbjct: 211 SVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPT 270
Query: 236 VLDVAMLDEVITVSSEEAIETSKLLALKEGLL 267
VLD ++D+ + EEA +++L +EGLL
Sbjct: 271 VLDRTVVDKWFKSNDEEAFTFARMLIAQEGLL 302
>pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|B Chain B, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|C Chain C, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|D Chain D, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|E Chain E, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|F Chain F, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|G Chain G, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|H Chain H, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
Length = 303
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/255 (38%), Positives = 141/255 (55%), Gaps = 9/255 (3%)
Query: 13 ELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVL 72
+ IG+TP+V L + + I KLE P SVKDR A SMI +AE +G I PG VL
Sbjct: 6 QTIGNTPLVKLQRIGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VL 64
Query: 73 IELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVK 132
IE TSGNTGI LA IAA +GY++ ++MP S ERR +RA GAE+ L G EG +
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEG-AR 123
Query: 133 KGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXX 192
++ G +L QF NP NP HY TTGPEIW + G++ F
Sbjct: 124 DLALAMSERGEGKLLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGTITGVS 183
Query: 193 RFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEE 252
RFL+E+ + + G++P E + + G I+ A +P + + +++DEV+ + +
Sbjct: 184 RFLREQEKPVTIVGLQPEEGSSIPG-------IRRWPAEYMPGIFNASLVDEVLDIHQND 236
Query: 253 AIETSKLLALKEGLL 267
A T + LA++EG+
Sbjct: 237 AENTMRELAVREGIF 251
>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
Length = 435
Score = 171 bits (434), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/272 (39%), Positives = 145/272 (53%), Gaps = 11/272 (4%)
Query: 6 EIKKDVTELIGHTPMVYLNNVVD--GCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKG 63
+I D+ + IG TPMV +N + G + AK E SVKDRI+ MI+DAE G
Sbjct: 97 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDG 156
Query: 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123
+ PG T+ IE TSGNTGIGLA AA RGY+ II+MP S E+ +LRALGAE+
Sbjct: 157 TLKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPT 215
Query: 124 AVGF---EGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXX 180
F E V + N PN +IL Q+ N +NP HY+TT EI GK+D
Sbjct: 216 NARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVA 275
Query: 181 XXXXXXXXXXXXRFLKEKNPNIKVYGIEP-----SESAVLNGGQPGKHLIQGIGAGVIPP 235
R LKEK P ++ G++P +E LN + + ++GIG IP
Sbjct: 276 SVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPT 335
Query: 236 VLDVAMLDEVITVSSEEAIETSKLLALKEGLL 267
VLD ++D+ + EEA +++L +EGLL
Sbjct: 336 VLDRTVVDKWFKSNDEEAFTFARMLIAQEGLL 367
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 141/271 (52%), Gaps = 11/271 (4%)
Query: 4 KCEIKKDVTELIGHTPMVYLNNV--VDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAED 61
+ +I ++ E+IG TP+V LNN+ DG + AK E + P SVKDRI Y M++DAE+
Sbjct: 47 RQQITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEE 106
Query: 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121
+GL+ PG T+ IE TSGNTGIGLA A +GYK II+MP S E+ LR LGA++
Sbjct: 107 QGLLKPGYTI-IEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRT 165
Query: 122 DPAVGF---EGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 178
+ EG + +++ TPN +L Q+ N NP HY+ T EI KVD
Sbjct: 166 PTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMI 225
Query: 179 XXXXXXXXXXXXXXRFLKEKNPNIKVYGIEP-----SESAVLNGGQPGKHLIQGIGAGVI 233
R +KE+ P+ ++ G++P + A LN + ++GIG
Sbjct: 226 VVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGYDFP 285
Query: 234 PPVLDVAMLDEVITVSSEEAIETSKLLALKE 264
P V D ++D + + S+ L +E
Sbjct: 286 PTVFDDTVVDVWTKIGDSDCFPMSRRLNAEE 316
>pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
pdb|2PQM|B Chain B, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
Length = 343
Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 100/269 (37%), Positives = 148/269 (55%), Gaps = 7/269 (2%)
Query: 4 KCEIKKDVTELIGHTPMVYLNNVVDGCV----ARIAAKLEMMQPCSSVKDRIAYSMIKDA 59
+ I ++ E IG TP+V L+ V + RI KLE P SSVKDR+ ++++ A
Sbjct: 10 RKRIYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQA 69
Query: 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119
G + PG + IE TSGNTGI L A GY++ I MPST S+ER++I++A GAE+
Sbjct: 70 IKDGRLKPGMEI-IESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELI 128
Query: 120 LADPAVGFEGFVKKGEEILNRTPNGYILG-QFENPANPEIHYETTGPEIWNDSGGKVDAF 178
L + G G +++ +++ P Y + QF NP N H+ T EIW D+ G+VD
Sbjct: 129 LTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVDIV 187
Query: 179 XXXXXXXXXXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLD 238
LKEK IK+ +EP ESAVL G G H IQGIGAG IP +
Sbjct: 188 VSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIPDIYK 247
Query: 239 VAMLDEVITVSSEEAIETSKLLALKEGLL 267
+DE+I + +++A + ++ + +G++
Sbjct: 248 KEFVDEIIPIKTQDAWKMARAVVKYDGIM 276
>pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
pdb|3BM5|B Chain B, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
Length = 338
Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 100/269 (37%), Positives = 148/269 (55%), Gaps = 7/269 (2%)
Query: 4 KCEIKKDVTELIGHTPMVYLNNVVDGCV----ARIAAKLEMMQPCSSVKDRIAYSMIKDA 59
+ I ++ E IG TP+V L+ V + RI KLE P SSVKDR+ ++++ A
Sbjct: 9 RKRIYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQA 68
Query: 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119
G + PG + IE TSGNTGI L A GY++ I MPST S+ER++I++A GAE+
Sbjct: 69 IKDGRLKPGMEI-IESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELI 127
Query: 120 LADPAVGFEGFVKKGEEILNRTPNGYILG-QFENPANPEIHYETTGPEIWNDSGGKVDAF 178
L + G G +++ +++ P Y + QF NP N H+ T EIW D+ G+VD
Sbjct: 128 LTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVDIV 186
Query: 179 XXXXXXXXXXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLD 238
LKEK IK+ +EP ESAVL G G H IQGIGAG IP +
Sbjct: 187 VSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIPDIYK 246
Query: 239 VAMLDEVITVSSEEAIETSKLLALKEGLL 267
+DE+I + +++A + ++ + +G++
Sbjct: 247 KEFVDEIIPIKTQDAWKMARAVVKYDGIM 275
>pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
pdb|3DWG|B Chain B, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
Length = 325
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 132/263 (50%), Gaps = 16/263 (6%)
Query: 13 ELIGHTPMVYLNNVV-------DGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLI 65
+ +G+TP+V L + DG R+ AKLE P S+KDR A MI+ AE GL+
Sbjct: 11 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLL 70
Query: 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAV 125
PG T+L E TSGNTGI LA A +GY+LI +MP S+ERR +L GA++ +
Sbjct: 71 RPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 129
Query: 126 GFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXX 185
G V +E+ P+ +L Q+ NPAN + HY TGPE+ D ++ F
Sbjct: 130 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 188
Query: 186 XXXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEV 245
RFL+E N+K+ EP G + ++ + G +P + D +L
Sbjct: 189 GTLMGTGRFLREHVANVKIVAAEPRYGE-------GVYALRNMDEGFVPELYDPEILTAR 241
Query: 246 ITVSSEEAIETSKLLALKEGLLV 268
+V + +A+ ++ L EG+
Sbjct: 242 YSVGAVDAVRRTRELVHTEGIFA 264
>pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
pdb|3DWI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
Length = 323
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 131/263 (49%), Gaps = 16/263 (6%)
Query: 13 ELIGHTPMVYLNNVV-------DGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLI 65
+ +G+TP+V L + DG R+ AKLE P S+KDR A MI+ AE GL+
Sbjct: 9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLL 68
Query: 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAV 125
PG T+L E TSGNTGI LA A +GY+LI +MP S+ERR +L GA++ +
Sbjct: 69 RPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 127
Query: 126 GFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXX 185
G V +E+ P+ +L Q+ NPAN + HY TGPE+ D ++ F
Sbjct: 128 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 186
Query: 186 XXXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEV 245
RFL+E N+ + EP G + ++ + G +P + D +L
Sbjct: 187 GTLMGTGRFLREHVANVAIVAAEPRYG-------EGVYALRNMDEGFVPELYDPEILTAR 239
Query: 246 ITVSSEEAIETSKLLALKEGLLV 268
+V + +A+ ++ L EG+
Sbjct: 240 YSVGAVDAVRRTRELVHTEGIFA 262
>pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3DKI|B Chain B, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3FGP|A Chain A, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
pdb|3FGP|B Chain B, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
Length = 326
Score = 134 bits (337), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 131/263 (49%), Gaps = 16/263 (6%)
Query: 13 ELIGHTPMVYLNNVV-------DGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLI 65
+ +G+TP+V L + DG R+ AKLE P S+ DR A MI+ AE GL+
Sbjct: 12 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIXDRPAVRMIEQAEADGLL 71
Query: 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAV 125
PG T+L E TSGNTGI LA A +GY+LI +MP S+ERR +L GA++ +
Sbjct: 72 RPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 130
Query: 126 GFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXX 185
G V +E+ P+ +L Q+ NPAN + HY TGPE+ D ++ F
Sbjct: 131 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 189
Query: 186 XXXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEV 245
RFL+E N+K+ EP G + ++ + G +P + D +L
Sbjct: 190 GTLMGTGRFLREHVANVKIVAAEPRYG-------EGVYALRNMDEGFVPELYDPEILTAR 242
Query: 246 ITVSSEEAIETSKLLALKEGLLV 268
+V + +A+ ++ L EG+
Sbjct: 243 YSVGAVDAVRRTRELVHTEGIFA 265
>pdb|1WKV|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|1WKV|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|3VSA|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
pdb|3VSA|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
Length = 389
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 112/245 (45%), Gaps = 26/245 (10%)
Query: 33 RIAAKLEMMQPCS-SVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASR 91
R+ KLE P S SVKDR A +I + + G +++ + TS N G+ L+ +A
Sbjct: 111 RVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEKG-SLVADATSSNFGVALSAVARLY 167
Query: 92 GYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN-GYI-LGQ 149
GY+ + +P +++ R LGA+V + DP V ++ + N G++ + Q
Sbjct: 168 GYRARVYLPGAAEEFGKLLPRLLGAQV-IVDPEA--PSTVHLLPRVMKDSKNEGFVHVNQ 224
Query: 150 FENPANPEIHYETTGPEIWNDS---GGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYG 206
F N AN E H T EI+ S G + +L+ +P+I+
Sbjct: 225 FYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVL 284
Query: 207 IEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVIT---VSSEEAIETSKLLALK 263
++P++ + G I+ + G +L + MLD T V+ EEA+E +A
Sbjct: 285 VQPAQGDSIPG-------IRRVETG----MLWINMLDISYTLAEVTLEEAMEAVVEVARS 333
Query: 264 EGLLV 268
+GL++
Sbjct: 334 DGLVI 338
>pdb|3VSC|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSC|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSD|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
pdb|3VSD|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
Length = 389
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 111/245 (45%), Gaps = 26/245 (10%)
Query: 33 RIAAKLEMMQPCS-SVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASR 91
R+ KLE P S SV DR A +I + + G +++ + TS N G+ L+ +A
Sbjct: 111 RVWLKLEWYNPFSLSVADRPAVEIISRLSRR--VEKG-SLVADATSSNFGVALSAVARLY 167
Query: 92 GYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN-GYI-LGQ 149
GY+ + +P +++ R LGA+V + DP V ++ + N G++ + Q
Sbjct: 168 GYRARVYLPGAAEEFGKLLPRLLGAQV-IVDPEA--PSTVHLLPRVMKDSKNEGFVHVNQ 224
Query: 150 FENPANPEIHYETTGPEIWNDS---GGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYG 206
F N AN E H T EI+ S G + +L+ +P+I+
Sbjct: 225 FYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVL 284
Query: 207 IEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVIT---VSSEEAIETSKLLALK 263
++P++ + G I+ + G +L + MLD T V+ EEA+E +A
Sbjct: 285 VQPAQGDSIPG-------IRRVETG----MLWINMLDISYTLAEVTLEEAMEAVVEVARS 333
Query: 264 EGLLV 268
+GL++
Sbjct: 334 DGLVI 338
>pdb|1TDJ|A Chain A, Threonine Deaminase (Biosynthetic) From E. Coli
Length = 514
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
++ V E TP+ + + I K E QP S K R AY+M+ GL
Sbjct: 21 LRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMA-----GLTE 75
Query: 67 PGKTV-LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120
K +I ++GN G+AF +A G K +I+MP+ + + +R G EV L
Sbjct: 76 EQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLL 130
>pdb|3HMK|A Chain A, Crystal Structure Of Serine Racemase
pdb|3HMK|B Chain B, Crystal Structure Of Serine Racemase
pdb|3L6C|A Chain A, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
pdb|3L6C|B Chain B, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
Length = 339
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 101/246 (41%), Gaps = 22/246 (8%)
Query: 37 KLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLI 96
K E+ Q S K R A + I+ L K V+ +SGN G L + A G
Sbjct: 45 KCELFQKTGSFKIRGALNAIRGLIPDTLEGKPKAVVTH-SSGNHGQALTYAAKLEGIPAY 103
Query: 97 IIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANP 156
I++P T +++ ++A GA + ++P+ E + I+ T G ++ + PA
Sbjct: 104 IVVPQTAPNCKKLAIQAYGASIVYSEPS--DESRENVAQRIIQET-EGILVHPNQEPAVI 160
Query: 157 EIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYGIEPS------ 210
T E+ N VDA +K P++KVY EPS
Sbjct: 161 A-GQGTIALEVLNQV-PLVDALVVPVGGGGMVAGIAITIKTLKPSVKVYAAEPSNADDCY 218
Query: 211 ESAVLNGGQPGKHLIQGIGAGV--------IPPVLDVAMLDEVITVSSEEAIETSKLLAL 262
+S + P H + I GV P + D ++D+V TV+ +E ++L+
Sbjct: 219 QSKLKGELTPNLHPPETIADGVKSSIGLNTWPIIRD--LVDDVFTVTEDEIKYATQLVWE 276
Query: 263 KEGLLV 268
+ LL+
Sbjct: 277 RMKLLI 282
>pdb|1VE5|A Chain A, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|B Chain B, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|C Chain C, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|D Chain D, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
Length = 311
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 39 EMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIII 98
E +Q S K R A S K L L+ ++SGN G+A+ A G K +++
Sbjct: 42 EHLQKTGSFKARGALS-------KALALENPKGLLAVSSGNHAQGVAYAAQVLGVKALVV 94
Query: 99 MPSTYSIERRIILRALGAEV 118
MP S ++ RA GAEV
Sbjct: 95 MPEDASPYKKACARAYGAEV 114
>pdb|3L6B|A Chain A, X-Ray Crystal Structure Of Human Serine Racemase In
Complex Malonate A Potent Inhibitor
Length = 346
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 99/246 (40%), Gaps = 22/246 (8%)
Query: 37 KLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLI 96
K E+ Q S K R A + ++ L K V+ +SGN G L + A G
Sbjct: 45 KCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTH-SSGNHGQALTYAAKLEGIPAY 103
Query: 97 IIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANP 156
I++P T +++ ++A GA + +P+ V K + G ++ + PA
Sbjct: 104 IVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENVAKR---VTEETEGIMVHPNQEPAVI 160
Query: 157 EIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYGIEPSES---- 212
T E+ N VDA +K P++KVY EPS +
Sbjct: 161 A-GQGTIALEVLNQVP-LVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCY 218
Query: 213 -AVLNGG-----QPGKHLIQG----IGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLAL 262
+ L G P + + G IG P + D ++D++ TV+ +E ++L+
Sbjct: 219 QSKLKGKLMPNLYPPETIADGVKSSIGLNTWPIIRD--LVDDIFTVTEDEIKCATQLVWE 276
Query: 263 KEGLLV 268
+ LL+
Sbjct: 277 RMKLLI 282
>pdb|3L6R|A Chain A, The Structure Of Mammalian Serine Racemase: Evidence For
Conformational Changes Upon Inhibitor Binding
Length = 346
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 100/254 (39%), Gaps = 38/254 (14%)
Query: 37 KLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLI 96
K E+ Q S R A + ++ L K V+ +SGN G L + A G
Sbjct: 45 KCELFQKTGSFXIRGALNAVRSLVPDALERKPKAVVTH-SSGNHGQALTYAAKLEGIPAY 103
Query: 97 IIMPSTYSIERRIILRALGAEVYLADPA-VGFEGFVKKGEEIL-------NRTPNGYILG 148
I++P T +++ ++A GA + +P+ E K+ E N+ P I G
Sbjct: 104 IVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENVAKRVTEETEGIXVHPNQEP-AVIAG 162
Query: 149 QFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYGIE 208
Q T E+ N VDA +K P++KVY E
Sbjct: 163 Q-----------GTIALEVLNQVP-LVDALVVPVGGGGXLAGIAITVKALKPSVKVYAAE 210
Query: 209 PSES-----AVLNGG-----QPGKHLIQG----IGAGVIPPVLDVAMLDEVITVSSEEAI 254
PS + + L G P + + G IG P + D ++D++ TV+ +E
Sbjct: 211 PSNADDCYQSKLKGKLXPNLYPPETIADGVKSSIGLNTWPIIRD--LVDDIFTVTEDEIK 268
Query: 255 ETSKLLALKEGLLV 268
++L+ + LL+
Sbjct: 269 CATQLVWERXKLLI 282
>pdb|4D9I|A Chain A, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9I|B Chain B, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9N|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
pdb|4D9N|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
Length = 398
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122
K T GN G G+A+ A G +I MP + ER + LGAE + D
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9M|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
pdb|4D9M|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
Length = 398
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122
K T GN G G+A+ A G +I MP + ER + LGAE + D
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9K|A Chain A, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|D Chain D, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|B Chain B, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|C Chain C, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
Length = 398
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122
K T GN G G+A+ A G +I MP + ER + LGAE + D
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|3IAU|A Chain A, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
pdb|3IAU|B Chain B, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
Length = 366
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 88/229 (38%), Gaps = 17/229 (7%)
Query: 37 KLEMMQPCSSVKDRIAYSMIKDAE----DKGLITPGKTVLIELTSGNTGIGLAFIAASRG 92
K E Q S R AY+M+ + DKG+IT ++GN G+A
Sbjct: 80 KREDKQRVFSFXLRGAYNMMSNLSREELDKGVITA--------SAGNHAQGVALAGQRLN 131
Query: 93 YKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFEN 152
I+MP+T + +RALG +V L F+ E+ + YI F++
Sbjct: 132 CVAKIVMPTTTPQIKIDAVRALGGDVVLYGKT--FDEAQTHALELSEKDGLKYI-PPFDD 188
Query: 153 PANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYGIEPSES 212
P + T G EI N + A F K+ PN K+ G+EP +
Sbjct: 189 PGVIK-GQGTIGTEI-NRQLKDIHAVFIPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGA 246
Query: 213 AVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLA 261
A + H ++ + VA++ E +E I+ L+A
Sbjct: 247 ASMTLSLHEGHRVKLSNVDTFADGVAVALVGEYTFAKCQELIDGMVLVA 295
>pdb|2D1F|A Chain A, Structure Of Mycobacterium Tuberculosis Threonine Synthase
pdb|2D1F|B Chain B, Structure Of Mycobacterium Tuberculosis Threonine Synthase
Length = 360
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 2 EDKCEIKKD---VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKD 58
D+ + D VT L G TP++ N+ I K+E + P S KDR + D
Sbjct: 20 RDRLPVGDDWTPVTLLEGGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTD 79
Query: 59 AEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100
A + G+ ++ ++GNT A AA G +++P
Sbjct: 80 A-----LAHGQRAVLCASTGNTSASAAAYAARAGITCAVLIP 116
>pdb|4D9G|A Chain A, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
pdb|4D9G|B Chain B, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
Length = 398
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122
K T GN G G+A+ A G +I P + ER + LGAE + D
Sbjct: 112 KXTFATTTDGNHGRGVAWAAQQLGQNAVIYXPKGSAQERVDAILNLGAECIVTD 165
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 31.6 bits (70), Expect = 0.49, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRA 113
+G + PG++VLI SG G IA SRG + + + S E+R L+A
Sbjct: 1662 RGRMQPGESVLIHSGSGGVGQAAIAIALSRGCR---VFTTVGSAEKRAYLQA 1710
>pdb|1V71|A Chain A, Crystal Structure Of S.pombe Serine Racemase
pdb|1WTC|A Chain A, Crystal Structure Of S.ponbe Serine Racemase Complex With
Amppcp
pdb|2ZPU|A Chain A, Crystal Structure Of Modified Serine Racemase From
S.Pombe.
pdb|2ZR8|A Chain A, Crystal Structure Of Modified Serine Racemase Complexed
With Serine
Length = 323
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 107/286 (37%), Gaps = 35/286 (12%)
Query: 2 EDKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDR---IAYSMIKD 58
+D + + + TP++ + V VA + K E Q + K R A S + +
Sbjct: 11 DDVASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNE 70
Query: 59 AEDK-GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117
A+ K G++T +SGN +A A G IIMP + + G +
Sbjct: 71 AQRKAGVLT--------FSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQ 122
Query: 118 VYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDA 177
V + D + K +EI R I+ +++P + T E++ + G +DA
Sbjct: 123 VIMYDRYK--DDREKMAKEISERE-GLTIIPPYDHP-HVLAGQGTAAKELFEEVG-PLDA 177
Query: 178 FXXXXXXXXXXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVL 237
+ PN +VYG+EP N GQ + +
Sbjct: 178 LFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAG---NDGQQSFRKGSIVHIDTPKTIA 234
Query: 238 DVAM---------------LDEVITVSSEEAIETSKLLALKEGLLV 268
D A +D+++TVS EE I+ K A + ++V
Sbjct: 235 DGAQTQHLGNYTFSIIKEKVDDILTVSDEELIDCLKFYAARMKIVV 280
>pdb|2ZSJ|A Chain A, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|B Chain B, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|C Chain C, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|D Chain D, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
Length = 352
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 11 VTELIGHTPMVYLNNVVD--GCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPG 68
VT G+TP++ +N+ G +I K E + P S KDR I A + G
Sbjct: 24 VTLYEGNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKA-----VEAG 78
Query: 69 KTVLIELTSGNT 80
K +I ++GNT
Sbjct: 79 KRAVICASTGNT 90
>pdb|3MZ2|A Chain A, Crystal Structure Of A Glycerophosphoryl Diester
Phosphodiesterase (Bdi_3922) From Parabacteroides
Distasonis Atcc 8503 At 1.55 A Resolution
pdb|3MZ2|B Chain B, Crystal Structure Of A Glycerophosphoryl Diester
Phosphodiesterase (Bdi_3922) From Parabacteroides
Distasonis Atcc 8503 At 1.55 A Resolution
Length = 292
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 193 RFLKEKNPNIKVYGIEPSESAVL---NGGQPGKHLIQGIGAGVIPPVLDV 239
RF EKNPN ++ AV + G P H+ +G + P V +V
Sbjct: 171 RFFYEKNPNFXFEAFVKTKEAVQDYEDNGIPWSHIXAYVGPKITPEVREV 220
>pdb|3SS7|X Chain X, Crystal Structure Of Holo D-Serine Dehydratase From
Escherichia Coli At 1.55 A Resolution
pdb|3SS9|X Chain X, Crystal Structure Of Holo D-Serine Dehydratase From
Escherichia Coli At 1.97 A Resolution
Length = 442
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 76 TSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV--YLADPAVGFEGFVKK 133
++GN G+ + ++A G+K+ + M + ++ LR+ G V Y D V V++
Sbjct: 167 STGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVA----VEE 222
Query: 134 GEEILNRTPNGYILGQFENPANPEIHYETTGPEI---WNDSGGKVDA 177
G + PN + + EN + Y G + + G VDA
Sbjct: 223 GRKAAQSDPNCFFIDD-ENSRTLFLGYSVAGQRLKAQFAQQGRIVDA 268
>pdb|3R0Z|A Chain A, Crystal Structure Of Apo D-Serine Deaminase From
Salmonella Typhimurium
Length = 448
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 76 TSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV--YLADPAVGFEGFVKK 133
++GN G+ + ++A G+K+ + M + ++ LR+ G V Y D V V++
Sbjct: 165 STGNLGLSIGIMSACIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEDDYGVA----VEQ 220
Query: 134 GEEILNRTPNGYILGQFENPANPEIHYETTGPEI---WNDSGGKVDA 177
G + PN + + EN + Y G + + G VDA
Sbjct: 221 GRKAAQSDPNCFFIDD-ENSRTLFLGYAVAGQRLKAQFAQQGRVVDA 266
>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester
Reductase (Cgi- 63)
Length = 357
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 41 MQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI--AASRGYKLIII 98
+ PC+ AY M+ D E + PG +V+ + N+G+G A I AA+ G + I +
Sbjct: 150 VNPCT------AYRMLMDFEQ---LQPGDSVI--QNASNSGVGQAVIQIAAALGLRTINV 198
Query: 99 M---PSTYSIERRIILRALGAE 117
+ P + R L++LGAE
Sbjct: 199 VRDRPDIQKLSDR--LKSLGAE 218
>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
pdb|2VCY|B Chain B, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
Length = 344
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 41 MQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI--AASRGYKLIII 98
+ PC+ AY M+ D E + PG +V+ + N+G+G A I AA+ G + I +
Sbjct: 137 VNPCT------AYRMLMDFEQ---LQPGDSVI--QNASNSGVGQAVIQIAAALGLRTINV 185
Query: 99 M---PSTYSIERRIILRALGAE 117
+ P + R L++LGAE
Sbjct: 186 VRDRPDIQKLSDR--LKSLGAE 205
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of
Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) At 1.48 A Resolution
pdb|4AVX|A Chain A, Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1.68 A
Resolution
Length = 226
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 195 LKEKNPNIKVYGIEPSESAVLNGGQ 219
+ +KNP++ +Y +E ES V N GQ
Sbjct: 54 VNDKNPHVALYALEVMESVVKNCGQ 78
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human
Inad- Like Protein
Length = 116
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 65 ITPGKTVLIELTSGNTGIGLAFIAA 89
I PG+ ++IE++ G +G+GL+ +
Sbjct: 13 IVPGQEMIIEISKGRSGLGLSIVGG 37
>pdb|1PQW|A Chain A, Putative Enoyl Reductase Domain Of Polyketide Synthase
pdb|1PQW|B Chain B, Putative Enoyl Reductase Domain Of Polyketide Synthase
Length = 198
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122
G ++PG+ VLI +G G+ IA G + I + S +R +L LG E
Sbjct: 34 GRLSPGERVLIHSATGGVGMAAVSIAKMIGAR---IYTTAGSDAKREMLSRLGVEY---- 86
Query: 123 PAVGFEGFVKKGEEILNRTPNGY 145
VG V +EIL T +GY
Sbjct: 87 --VGDSRSVDFADEILELT-DGY 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,046,230
Number of Sequences: 62578
Number of extensions: 320708
Number of successful extensions: 985
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 863
Number of HSP's gapped (non-prelim): 68
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)