Query 023814
Match_columns 276
No_of_seqs 167 out of 1172
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 06:51:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023814.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023814hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0031 CysK Cysteine synthase 100.0 7.8E-66 1.7E-70 443.0 28.8 266 9-276 3-270 (300)
2 PLN03013 cysteine synthase 100.0 4.7E-65 1E-69 461.4 29.1 270 7-276 113-382 (429)
3 PLN02565 cysteine synthase 100.0 1.9E-64 4.1E-69 448.8 29.8 270 7-276 5-274 (322)
4 PLN00011 cysteine synthase 100.0 1.2E-62 2.6E-67 438.5 30.4 276 1-276 1-276 (323)
5 PLN02556 cysteine synthase/L-3 100.0 1.6E-62 3.4E-67 442.5 29.8 269 7-275 49-317 (368)
6 TIGR01136 cysKM cysteine synth 100.0 9.8E-62 2.1E-66 429.0 29.2 264 12-276 2-265 (299)
7 PRK11761 cysM cysteine synthas 100.0 1.3E-61 2.8E-66 426.7 28.0 261 7-276 2-262 (296)
8 TIGR01139 cysK cysteine syntha 100.0 3.3E-61 7.1E-66 425.6 29.8 263 12-276 2-265 (298)
9 COG1171 IlvA Threonine dehydra 100.0 3.5E-62 7.6E-67 427.5 21.3 266 4-276 12-290 (347)
10 TIGR01138 cysM cysteine syntha 100.0 1.8E-60 4E-65 418.4 29.4 257 11-276 2-258 (290)
11 PRK10717 cysteine synthase A; 100.0 1.7E-59 3.7E-64 420.0 29.5 269 7-276 3-284 (330)
12 PLN02356 phosphateglycerate ki 100.0 2.2E-59 4.7E-64 424.3 28.4 269 7-276 43-369 (423)
13 cd01561 CBS_like CBS_like: Thi 100.0 4.3E-59 9.3E-64 410.9 29.4 260 16-276 1-262 (291)
14 PRK08526 threonine dehydratase 100.0 2.3E-59 4.9E-64 427.0 22.1 265 3-276 6-282 (403)
15 PLN02970 serine racemase 100.0 5.7E-59 1.2E-63 415.6 23.7 263 5-276 15-288 (328)
16 PRK06382 threonine dehydratase 100.0 1E-58 2.2E-63 424.8 23.6 265 3-276 11-287 (406)
17 PRK12483 threonine dehydratase 100.0 1.6E-58 3.6E-63 430.4 24.9 260 9-276 29-300 (521)
18 PRK07476 eutB threonine dehydr 100.0 8.4E-59 1.8E-63 413.9 21.8 265 3-276 5-283 (322)
19 KOG1252 Cystathionine beta-syn 100.0 7.7E-59 1.7E-63 397.7 19.5 269 7-275 42-315 (362)
20 PRK08198 threonine dehydratase 100.0 1.8E-58 3.9E-63 423.9 22.9 264 4-276 9-284 (404)
21 TIGR02991 ectoine_eutB ectoine 100.0 3.1E-58 6.7E-63 408.8 23.6 265 3-276 5-283 (317)
22 TIGR01137 cysta_beta cystathio 100.0 1.3E-57 2.7E-62 424.8 27.6 267 8-276 2-277 (454)
23 cd06447 D-Ser-dehyd D-Serine d 100.0 6.4E-58 1.4E-62 414.9 23.7 259 15-276 50-365 (404)
24 PRK08638 threonine dehydratase 100.0 8.4E-58 1.8E-62 407.9 24.0 262 4-275 14-288 (333)
25 TIGR02079 THD1 threonine dehyd 100.0 3.9E-58 8.4E-63 420.6 22.3 265 4-276 3-282 (409)
26 cd06448 L-Ser-dehyd Serine deh 100.0 1.6E-57 3.4E-62 404.2 24.2 256 17-276 1-271 (316)
27 PRK08639 threonine dehydratase 100.0 8.7E-58 1.9E-62 420.1 22.7 268 3-276 11-293 (420)
28 PLN02550 threonine dehydratase 100.0 1E-57 2.2E-62 427.3 23.2 260 9-276 101-372 (591)
29 PRK07048 serine/threonine dehy 100.0 1.2E-57 2.6E-62 406.6 21.9 264 4-276 11-286 (321)
30 PRK07334 threonine dehydratase 100.0 5E-58 1.1E-62 420.1 19.9 265 3-276 9-283 (403)
31 PRK08813 threonine dehydratase 100.0 2.6E-57 5.6E-62 404.2 23.9 255 3-276 25-290 (349)
32 PRK06110 hypothetical protein; 100.0 1.4E-57 3.1E-62 406.0 21.6 264 4-276 8-283 (322)
33 PRK06815 hypothetical protein; 100.0 2.1E-57 4.5E-62 404.2 21.8 265 3-276 6-283 (317)
34 TIGR01124 ilvA_2Cterm threonin 100.0 2.9E-57 6.4E-62 422.2 23.6 261 8-276 8-280 (499)
35 TIGR01127 ilvA_1Cterm threonin 100.0 3.2E-57 6.9E-62 412.7 22.1 250 18-276 1-262 (380)
36 KOG1250 Threonine/serine dehyd 100.0 3.2E-57 6.9E-62 393.6 20.9 262 7-276 56-329 (457)
37 PRK06608 threonine dehydratase 100.0 5.8E-57 1.3E-61 403.3 22.9 264 3-276 9-285 (338)
38 PRK02991 D-serine dehydratase; 100.0 8.3E-57 1.8E-61 412.2 24.4 259 15-276 73-388 (441)
39 TIGR02035 D_Ser_am_lyase D-ser 100.0 3.1E-56 6.6E-61 407.0 25.0 260 14-276 67-383 (431)
40 cd01562 Thr-dehyd Threonine de 100.0 1.2E-56 2.6E-61 397.9 21.6 266 2-276 2-279 (304)
41 PRK09224 threonine dehydratase 100.0 2.4E-56 5.3E-61 417.6 24.7 261 8-276 11-283 (504)
42 PRK08246 threonine dehydratase 100.0 2.8E-56 6E-61 395.4 23.2 259 3-276 9-279 (310)
43 PRK06352 threonine synthase; V 100.0 2.8E-56 6E-61 401.3 21.6 258 9-276 20-291 (351)
44 PRK08197 threonine synthase; V 100.0 2.4E-55 5.2E-60 401.3 23.6 258 10-276 72-354 (394)
45 PRK06721 threonine synthase; R 100.0 9.3E-55 2E-59 391.8 25.1 259 7-276 18-291 (352)
46 PRK07591 threonine synthase; V 100.0 4.7E-55 1E-59 401.6 23.0 259 10-276 82-364 (421)
47 cd01563 Thr-synth_1 Threonine 100.0 1E-54 2.2E-59 388.7 23.7 258 9-276 14-295 (324)
48 PRK07409 threonine synthase; V 100.0 1.4E-54 3.1E-59 391.3 24.3 257 9-276 23-295 (353)
49 PRK06381 threonine synthase; V 100.0 1.8E-54 3.9E-59 386.1 23.9 256 12-276 10-294 (319)
50 PRK06450 threonine synthase; V 100.0 1.8E-54 3.9E-59 386.7 23.9 243 10-276 51-315 (338)
51 PRK08329 threonine synthase; V 100.0 6.6E-54 1.4E-58 385.5 24.8 248 11-276 58-317 (347)
52 PRK06260 threonine synthase; V 100.0 5.6E-54 1.2E-58 392.7 22.9 257 9-276 59-341 (397)
53 KOG1251 Serine racemase [Signa 100.0 2.2E-54 4.9E-59 354.4 17.5 266 2-276 10-287 (323)
54 PLN02569 threonine synthase 100.0 2E-53 4.2E-58 394.1 24.9 260 10-276 126-412 (484)
55 PRK08206 diaminopropionate amm 100.0 8.9E-54 1.9E-58 390.4 22.2 268 5-276 30-348 (399)
56 PRK05638 threonine synthase; V 100.0 2.4E-52 5.2E-57 386.6 24.3 253 10-276 59-329 (442)
57 cd00640 Trp-synth-beta_II Tryp 100.0 1.7E-51 3.7E-56 354.0 25.9 220 18-276 1-221 (244)
58 TIGR00260 thrC threonine synth 100.0 4.3E-51 9.3E-56 365.8 21.9 257 9-276 15-297 (328)
59 TIGR01747 diampropi_NH3ly diam 100.0 4.3E-51 9.4E-56 369.2 21.4 265 7-276 13-329 (376)
60 PRK13028 tryptophan synthase s 100.0 6.7E-50 1.4E-54 362.4 26.1 263 9-276 53-362 (402)
61 TIGR01415 trpB_rel pyridoxal-p 100.0 1.1E-49 2.3E-54 363.9 26.5 261 7-276 58-378 (419)
62 TIGR03528 2_3_DAP_am_ly diamin 100.0 1.9E-50 4.2E-55 367.3 19.8 264 8-276 33-348 (396)
63 TIGR00263 trpB tryptophan synt 100.0 1.3E-49 2.7E-54 361.8 24.1 264 8-276 40-350 (385)
64 PRK04346 tryptophan synthase s 100.0 2E-49 4.3E-54 358.8 24.7 264 8-276 48-358 (397)
65 cd06446 Trp-synth_B Tryptophan 100.0 3.1E-49 6.8E-54 357.5 25.4 264 7-276 23-334 (365)
66 PRK12391 tryptophan synthase s 100.0 5.1E-49 1.1E-53 359.9 26.5 260 11-276 71-387 (427)
67 PLN02618 tryptophan synthase, 100.0 4.5E-49 9.7E-54 357.0 24.6 265 7-276 55-371 (410)
68 TIGR03844 cysteate_syn cysteat 100.0 2.4E-49 5.3E-54 360.0 20.9 256 12-276 57-353 (398)
69 KOG1481 Cysteine synthase [Ami 100.0 5.9E-49 1.3E-53 328.0 19.2 265 9-274 41-333 (391)
70 PRK03910 D-cysteine desulfhydr 100.0 3.5E-49 7.5E-54 353.5 17.6 262 8-275 6-292 (331)
71 TIGR01275 ACC_deam_rel pyridox 100.0 3.8E-49 8.2E-54 350.7 17.5 255 14-275 4-275 (311)
72 PRK13802 bifunctional indole-3 100.0 5.5E-48 1.2E-52 367.6 26.0 264 8-276 316-634 (695)
73 PF00291 PALP: Pyridoxal-phosp 100.0 5.4E-49 1.2E-53 348.9 16.6 256 11-276 1-280 (306)
74 PRK12390 1-aminocyclopropane-1 100.0 1.3E-48 2.9E-53 350.4 18.8 264 6-275 4-298 (337)
75 cd06449 ACCD Aminocyclopropane 100.0 9.6E-49 2.1E-53 347.4 17.4 253 18-276 1-282 (307)
76 TIGR01274 ACC_deam 1-aminocycl 100.0 8.8E-48 1.9E-52 345.0 19.5 263 7-275 4-297 (337)
77 PRK13803 bifunctional phosphor 100.0 3.1E-46 6.8E-51 356.0 24.1 264 8-276 261-570 (610)
78 PRK14045 1-aminocyclopropane-1 100.0 2.9E-46 6.3E-51 334.0 16.5 261 7-275 11-290 (329)
79 COG0498 ThrC Threonine synthas 100.0 4.3E-42 9.4E-47 309.7 18.9 257 10-276 69-347 (411)
80 COG0133 TrpB Tryptophan syntha 100.0 6.6E-34 1.4E-38 241.9 18.9 261 10-275 48-354 (396)
81 COG2515 Acd 1-aminocyclopropan 100.0 1.1E-32 2.4E-37 233.9 16.5 262 4-271 2-281 (323)
82 COG1350 Predicted alternative 100.0 2.6E-31 5.7E-36 226.6 18.4 265 7-276 68-388 (432)
83 PRK09225 threonine synthase; V 100.0 3.7E-31 7.9E-36 243.8 20.1 244 17-276 88-390 (462)
84 cd01560 Thr-synth_2 Threonine 100.0 3.1E-30 6.7E-35 237.8 20.1 244 18-276 88-393 (460)
85 KOG1395 Tryptophan synthase be 100.0 5.1E-29 1.1E-33 214.3 16.8 258 13-275 118-422 (477)
86 COG3048 DsdA D-serine dehydrat 99.9 1E-24 2.2E-29 184.9 16.2 259 14-275 75-390 (443)
87 PF03808 Glyco_tran_WecB: Glyc 89.5 2.4 5.3E-05 34.2 8.0 102 80-187 12-114 (172)
88 cd08230 glucose_DH Glucose deh 87.4 5.1 0.00011 36.0 9.6 53 66-119 171-223 (355)
89 COG0604 Qor NADPH:quinone redu 87.4 7.3 0.00016 34.9 10.4 57 62-121 137-193 (326)
90 PF05368 NmrA: NmrA-like famil 86.7 8.2 0.00018 32.3 9.9 50 72-122 2-51 (233)
91 cd08294 leukotriene_B4_DH_like 86.3 11 0.00024 33.1 11.0 58 61-121 137-194 (329)
92 TIGR03201 dearomat_had 6-hydro 86.2 12 0.00025 33.6 11.2 57 61-121 160-216 (349)
93 TIGR03366 HpnZ_proposed putati 85.9 7.2 0.00016 33.7 9.5 52 65-119 118-169 (280)
94 KOG0025 Zn2+-binding dehydroge 85.9 7.5 0.00016 34.3 9.1 86 33-122 124-216 (354)
95 cd06533 Glyco_transf_WecG_TagA 85.4 5.7 0.00012 32.0 7.9 118 81-207 11-131 (171)
96 TIGR02819 fdhA_non_GSH formald 83.9 18 0.0004 33.2 11.5 56 61-119 179-234 (393)
97 PRK09424 pntA NAD(P) transhydr 82.2 40 0.00086 32.3 13.2 52 67-122 164-215 (509)
98 TIGR02825 B4_12hDH leukotriene 81.5 19 0.0004 31.8 10.3 58 61-121 132-189 (325)
99 COG2130 Putative NADP-dependen 81.2 14 0.00029 32.9 8.8 58 60-120 143-201 (340)
100 cd01075 NAD_bind_Leu_Phe_Val_D 81.2 21 0.00045 29.5 9.9 66 49-118 6-75 (200)
101 cd08295 double_bond_reductase_ 80.8 23 0.00049 31.4 10.7 56 61-119 145-201 (338)
102 PF00107 ADH_zinc_N: Zinc-bind 80.7 9.4 0.0002 28.5 7.1 39 81-122 3-41 (130)
103 TIGR00670 asp_carb_tr aspartat 80.7 6.6 0.00014 34.8 7.0 51 72-122 153-208 (301)
104 TIGR03451 mycoS_dep_FDH mycoth 79.0 26 0.00057 31.4 10.6 57 61-120 170-226 (358)
105 cd08293 PTGR2 Prostaglandin re 79.0 30 0.00065 30.6 10.9 57 62-121 147-207 (345)
106 cd08281 liver_ADH_like1 Zinc-d 78.5 29 0.00064 31.3 10.8 57 61-120 185-241 (371)
107 PF00764 Arginosuc_synth: Argi 78.5 22 0.00047 32.8 9.7 127 72-206 1-138 (388)
108 cd08274 MDR9 Medium chain dehy 78.1 25 0.00055 31.1 10.2 57 60-120 170-226 (350)
109 cd08256 Zn_ADH2 Alcohol dehydr 78.1 39 0.00084 30.1 11.4 57 61-120 168-224 (350)
110 PLN03154 putative allyl alcoho 78.0 31 0.00067 30.9 10.7 58 61-121 152-210 (348)
111 PRK09880 L-idonate 5-dehydroge 77.9 25 0.00054 31.3 10.1 53 65-120 167-219 (343)
112 cd08233 butanediol_DH_like (2R 76.5 44 0.00096 29.7 11.3 58 61-121 166-223 (351)
113 TIGR02822 adh_fam_2 zinc-bindi 76.1 16 0.00035 32.4 8.3 56 61-120 159-214 (329)
114 TIGR01064 pyruv_kin pyruvate k 75.9 64 0.0014 30.6 12.4 123 83-212 261-407 (473)
115 PF02826 2-Hacid_dh_C: D-isome 75.9 33 0.00071 27.6 9.3 102 71-196 38-142 (178)
116 COG0800 Eda 2-keto-3-deoxy-6-p 75.1 48 0.001 27.7 11.5 91 52-154 27-117 (211)
117 PF04127 DFP: DNA / pantothena 74.4 19 0.00042 29.4 7.6 61 72-141 22-83 (185)
118 TIGR00696 wecB_tagA_cpsF bacte 74.2 29 0.00063 28.2 8.5 98 81-186 13-112 (177)
119 PF00185 OTCace: Aspartate/orn 73.6 11 0.00023 30.1 5.7 46 77-122 12-65 (158)
120 cd08292 ETR_like_2 2-enoyl thi 73.5 39 0.00084 29.4 10.0 56 61-119 133-188 (324)
121 PF01210 NAD_Gly3P_dh_N: NAD-d 73.4 7.7 0.00017 30.6 4.9 42 72-116 2-43 (157)
122 PF00107 ADH_zinc_N: Zinc-bind 72.9 16 0.00035 27.2 6.5 85 108-211 7-92 (130)
123 PF00070 Pyr_redox: Pyridine n 72.9 27 0.00058 23.8 7.8 49 72-120 2-59 (80)
124 PLN02740 Alcohol dehydrogenase 72.8 46 0.00099 30.2 10.5 57 61-120 192-248 (381)
125 cd00401 AdoHcyase S-adenosyl-L 72.8 18 0.00038 33.7 7.7 53 63-119 197-249 (413)
126 PF00106 adh_short: short chai 72.5 39 0.00084 26.1 8.9 55 70-124 2-60 (167)
127 KOG0024 Sorbitol dehydrogenase 72.0 23 0.00051 31.7 7.8 62 58-122 160-221 (354)
128 cd08289 MDR_yhfp_like Yhfp put 71.8 37 0.00081 29.6 9.5 49 68-119 147-195 (326)
129 cd08296 CAD_like Cinnamyl alco 71.7 48 0.001 29.3 10.2 52 64-119 160-211 (333)
130 KOG1201 Hydroxysteroid 17-beta 71.1 59 0.0013 28.8 10.1 74 68-142 38-113 (300)
131 PRK14030 glutamate dehydrogena 71.0 31 0.00066 32.4 8.9 53 48-100 207-259 (445)
132 KOG0023 Alcohol dehydrogenase, 70.9 23 0.00049 31.8 7.5 61 59-123 174-234 (360)
133 cd08297 CAD3 Cinnamyl alcohol 70.9 50 0.0011 29.1 10.2 53 64-119 162-214 (341)
134 cd08301 alcohol_DH_plants Plan 70.9 37 0.00081 30.5 9.5 57 61-120 181-237 (369)
135 COG1751 Uncharacterized conser 70.9 48 0.001 26.3 8.5 75 43-122 7-90 (186)
136 cd08239 THR_DH_like L-threonin 70.8 61 0.0013 28.6 10.7 58 60-120 156-213 (339)
137 PF01041 DegT_DnrJ_EryC1: DegT 70.8 7.7 0.00017 35.1 4.9 54 71-124 42-95 (363)
138 COG0159 TrpA Tryptophan syntha 70.6 45 0.00098 29.0 9.2 67 50-121 109-177 (265)
139 PRK12823 benD 1,6-dihydroxycyc 69.9 39 0.00085 28.5 8.9 72 69-140 9-81 (260)
140 PRK10309 galactitol-1-phosphat 69.6 35 0.00076 30.3 8.9 57 61-120 154-210 (347)
141 PRK13656 trans-2-enoyl-CoA red 69.6 95 0.0021 28.7 12.0 57 40-99 14-73 (398)
142 cd08300 alcohol_DH_class_III c 69.3 34 0.00073 30.9 8.8 57 61-120 180-236 (368)
143 PRK10754 quinone oxidoreductas 69.1 78 0.0017 27.6 11.1 55 62-119 135-189 (327)
144 TIGR01751 crot-CoA-red crotony 69.0 40 0.00087 30.8 9.3 56 63-121 185-240 (398)
145 TIGR02818 adh_III_F_hyde S-(hy 68.8 44 0.00094 30.2 9.4 57 61-120 179-235 (368)
146 PRK08628 short chain dehydroge 68.7 54 0.0012 27.5 9.6 55 69-123 8-62 (258)
147 cd08285 NADP_ADH NADP(H)-depen 68.4 73 0.0016 28.3 10.8 56 61-119 160-215 (351)
148 PRK05396 tdh L-threonine 3-deh 68.3 39 0.00085 29.9 8.9 51 67-120 163-213 (341)
149 cd08277 liver_alcohol_DH_like 68.2 41 0.00088 30.3 9.1 56 61-119 178-233 (365)
150 cd08288 MDR_yhdh Yhdh putative 68.0 47 0.001 28.9 9.3 51 67-120 146-196 (324)
151 COG1064 AdhP Zn-dependent alco 67.9 40 0.00086 30.5 8.6 60 59-122 158-217 (339)
152 COG2242 CobL Precorrin-6B meth 67.7 45 0.00098 27.4 8.2 57 65-122 32-90 (187)
153 PTZ00354 alcohol dehydrogenase 67.7 78 0.0017 27.5 10.7 56 63-121 136-191 (334)
154 PRK12743 oxidoreductase; Provi 67.6 40 0.00086 28.5 8.5 71 70-140 4-77 (256)
155 cd08287 FDH_like_ADH3 formalde 67.3 89 0.0019 27.5 11.2 53 62-117 163-215 (345)
156 cd08242 MDR_like Medium chain 67.2 53 0.0011 28.6 9.4 56 60-119 148-203 (319)
157 PRK08993 2-deoxy-D-gluconate 3 67.1 75 0.0016 26.7 10.1 54 69-123 11-64 (253)
158 PRK12481 2-deoxy-D-gluconate 3 66.8 60 0.0013 27.4 9.4 53 69-122 9-61 (251)
159 PRK13394 3-hydroxybutyrate deh 66.7 58 0.0013 27.3 9.3 55 69-123 8-63 (262)
160 PRK06935 2-deoxy-D-gluconate 3 66.6 58 0.0013 27.4 9.3 72 69-140 16-88 (258)
161 PRK06139 short chain dehydroge 66.6 40 0.00088 30.1 8.6 54 69-122 8-62 (330)
162 PRK12771 putative glutamate sy 66.5 16 0.00036 35.3 6.4 54 67-121 136-207 (564)
163 cd08246 crotonyl_coA_red croto 66.3 28 0.00061 31.6 7.7 54 64-120 190-243 (393)
164 PRK07109 short chain dehydroge 65.9 45 0.00097 29.8 8.8 55 69-123 9-64 (334)
165 cd08231 MDR_TM0436_like Hypoth 65.9 99 0.0021 27.6 11.4 53 63-119 173-226 (361)
166 TIGR00692 tdh L-threonine 3-de 64.9 61 0.0013 28.6 9.5 52 65-119 159-210 (340)
167 PRK08589 short chain dehydroge 64.7 52 0.0011 28.1 8.7 54 69-122 7-60 (272)
168 TIGR01832 kduD 2-deoxy-D-gluco 64.4 77 0.0017 26.3 9.6 54 69-123 6-59 (248)
169 PRK08226 short chain dehydroge 64.2 60 0.0013 27.3 9.0 54 69-122 7-60 (263)
170 PRK15408 autoinducer 2-binding 63.6 1.1E+02 0.0024 27.3 16.9 146 54-209 71-243 (336)
171 PRK08703 short chain dehydroge 63.0 87 0.0019 25.9 10.2 32 69-100 7-38 (239)
172 cd08291 ETR_like_1 2-enoyl thi 62.7 86 0.0019 27.4 10.0 50 70-122 145-195 (324)
173 KOG2616 Pyridoxalphosphate-dep 62.7 4.2 9.1E-05 34.1 1.3 31 245-275 148-178 (266)
174 cd08243 quinone_oxidoreductase 62.4 1E+02 0.0022 26.5 10.7 55 63-120 138-192 (320)
175 PRK05786 fabG 3-ketoacyl-(acyl 62.2 65 0.0014 26.6 8.7 33 69-101 6-38 (238)
176 PTZ00079 NADP-specific glutama 61.9 60 0.0013 30.6 8.9 54 48-101 216-269 (454)
177 PLN02827 Alcohol dehydrogenase 61.9 76 0.0016 28.8 9.6 56 61-119 187-242 (378)
178 PRK06182 short chain dehydroge 61.8 1E+02 0.0022 26.2 10.7 68 69-140 4-71 (273)
179 PF00290 Trp_syntA: Tryptophan 61.7 1.1E+02 0.0023 26.6 10.5 65 48-117 100-165 (259)
180 cd08284 FDH_like_2 Glutathione 61.2 65 0.0014 28.4 9.0 53 63-118 163-215 (344)
181 cd08269 Zn_ADH9 Alcohol dehydr 61.1 1.1E+02 0.0023 26.3 10.7 53 62-118 124-177 (312)
182 PRK05993 short chain dehydroge 60.9 1.1E+02 0.0023 26.2 10.3 52 69-123 5-56 (277)
183 PRK06114 short chain dehydroge 60.7 1E+02 0.0022 25.9 10.1 54 69-122 9-64 (254)
184 PF02887 PK_C: Pyruvate kinase 60.6 58 0.0013 24.1 7.3 68 70-141 19-87 (117)
185 cd05288 PGDH Prostaglandin deh 60.6 1.1E+02 0.0025 26.5 10.4 54 63-119 141-195 (329)
186 KOG1205 Predicted dehydrogenas 60.4 92 0.002 27.4 9.3 54 69-122 13-69 (282)
187 TIGR00561 pntA NAD(P) transhyd 60.4 44 0.00095 32.0 7.9 49 71-122 166-214 (511)
188 cd08298 CAD2 Cinnamyl alcohol 60.3 66 0.0014 28.1 8.8 54 61-118 161-214 (329)
189 PF13561 adh_short_C2: Enoyl-( 60.2 31 0.00066 28.9 6.4 48 76-123 4-53 (241)
190 cd08278 benzyl_alcohol_DH Benz 60.1 1.2E+02 0.0026 27.2 10.6 56 62-120 181-236 (365)
191 PRK10083 putative oxidoreducta 60.0 1.1E+02 0.0024 26.8 10.3 58 60-120 153-211 (339)
192 cd08258 Zn_ADH4 Alcohol dehydr 59.8 1.2E+02 0.0026 26.4 10.5 54 62-117 159-212 (306)
193 TIGR01316 gltA glutamate synth 59.6 45 0.00098 31.2 7.9 51 71-121 274-329 (449)
194 cd08245 CAD Cinnamyl alcohol d 59.5 75 0.0016 27.8 9.0 54 63-120 158-211 (330)
195 PF09837 DUF2064: Uncharacteri 59.1 76 0.0016 24.0 8.3 98 84-187 2-100 (122)
196 PLN02527 aspartate carbamoyltr 59.0 29 0.00063 30.8 6.1 45 78-122 163-210 (306)
197 cd05282 ETR_like 2-enoyl thioe 58.9 1.1E+02 0.0025 26.3 10.1 53 62-117 133-185 (323)
198 PRK07097 gluconate 5-dehydroge 58.7 83 0.0018 26.6 8.9 55 69-123 11-66 (265)
199 PRK08277 D-mannonate oxidoredu 58.5 89 0.0019 26.6 9.1 55 69-123 11-66 (278)
200 PF07279 DUF1442: Protein of u 58.5 58 0.0013 27.4 7.4 55 59-116 35-94 (218)
201 PRK15481 transcriptional regul 58.4 1.1E+02 0.0024 28.2 10.2 51 71-123 143-194 (431)
202 cd05211 NAD_bind_Glu_Leu_Phe_V 58.2 58 0.0013 27.3 7.6 52 50-101 4-55 (217)
203 PRK09422 ethanol-active dehydr 57.7 1.2E+02 0.0026 26.5 10.1 57 61-121 156-213 (338)
204 COG2518 Pcm Protein-L-isoaspar 57.6 1.1E+02 0.0025 25.5 9.2 110 53-184 58-171 (209)
205 cd08251 polyketide_synthase po 57.6 1.2E+02 0.0026 25.7 10.7 54 61-117 114-167 (303)
206 PLN02178 cinnamyl-alcohol dehy 57.4 48 0.001 30.1 7.5 52 66-120 177-228 (375)
207 PRK05557 fabG 3-ketoacyl-(acyl 57.4 1.1E+02 0.0023 25.2 9.5 55 69-123 6-62 (248)
208 PRK12937 short chain dehydroge 57.3 1.1E+02 0.0024 25.3 9.5 55 69-123 6-62 (245)
209 PLN02586 probable cinnamyl alc 57.3 76 0.0017 28.5 8.8 55 63-120 179-233 (360)
210 cd05313 NAD_bind_2_Glu_DH NAD( 57.2 62 0.0014 28.0 7.7 52 49-100 18-69 (254)
211 PRK06172 short chain dehydroge 57.1 94 0.002 25.9 8.9 54 69-122 8-62 (253)
212 cd08244 MDR_enoyl_red Possible 57.1 1.3E+02 0.0028 26.0 10.8 55 61-118 136-190 (324)
213 PRK07523 gluconate 5-dehydroge 56.7 90 0.002 26.1 8.7 54 69-122 11-65 (255)
214 cd08267 MDR1 Medium chain dehy 56.5 92 0.002 26.7 9.0 51 63-117 139-189 (319)
215 PRK08063 enoyl-(acyl carrier p 56.3 1.2E+02 0.0025 25.2 9.7 55 69-123 5-61 (250)
216 PRK07791 short chain dehydroge 56.2 1.3E+02 0.0028 26.0 9.8 73 69-141 7-90 (286)
217 COG0623 FabI Enoyl-[acyl-carri 56.2 67 0.0014 27.5 7.4 67 110-183 27-93 (259)
218 cd08259 Zn_ADH5 Alcohol dehydr 56.2 99 0.0022 26.8 9.2 53 63-118 158-210 (332)
219 COG1063 Tdh Threonine dehydrog 56.0 1.5E+02 0.0034 26.6 14.7 50 71-122 171-221 (350)
220 TIGR02823 oxido_YhdH putative 56.0 94 0.002 27.0 9.0 52 65-119 142-194 (323)
221 cd08240 6_hydroxyhexanoate_dh_ 55.5 1.2E+02 0.0027 26.8 9.8 50 67-119 175-224 (350)
222 COG0078 ArgF Ornithine carbamo 55.4 68 0.0015 28.5 7.6 49 74-122 159-213 (310)
223 cd05281 TDH Threonine dehydrog 55.4 93 0.002 27.5 8.9 51 66-119 162-212 (341)
224 PRK07792 fabG 3-ketoacyl-(acyl 55.3 1.1E+02 0.0024 26.8 9.2 55 69-123 13-69 (306)
225 cd08282 PFDH_like Pseudomonas 55.1 1E+02 0.0022 27.8 9.3 55 61-118 170-224 (375)
226 PRK07666 fabG 3-ketoacyl-(acyl 55.1 1.1E+02 0.0024 25.2 9.0 54 70-123 9-63 (239)
227 PRK12939 short chain dehydroge 54.9 1.1E+02 0.0024 25.3 8.9 54 69-122 8-62 (250)
228 cd08250 Mgc45594_like Mgc45594 54.8 1.4E+02 0.0031 25.9 10.9 54 63-119 135-188 (329)
229 PRK13376 pyrB bifunctional asp 54.7 35 0.00075 32.8 6.2 51 72-122 177-233 (525)
230 PRK08306 dipicolinate synthase 54.6 1.3E+02 0.0029 26.4 9.6 45 72-119 155-199 (296)
231 PLN02702 L-idonate 5-dehydroge 54.6 1.3E+02 0.0029 26.8 9.9 57 61-120 175-231 (364)
232 PRK08643 acetoin reductase; Va 54.5 1.3E+02 0.0028 25.2 9.4 53 70-122 4-57 (256)
233 PRK12935 acetoacetyl-CoA reduc 54.5 1.1E+02 0.0025 25.3 9.0 55 69-123 7-63 (247)
234 PRK08862 short chain dehydroge 54.5 1E+02 0.0022 25.6 8.6 72 69-140 6-79 (227)
235 PF12000 Glyco_trans_4_3: Gkyc 54.4 26 0.00056 28.3 4.6 42 161-208 54-95 (171)
236 TIGR02824 quinone_pig3 putativ 54.4 1.4E+02 0.003 25.6 11.0 56 61-119 133-188 (325)
237 PRK08303 short chain dehydroge 54.4 1.2E+02 0.0026 26.6 9.4 72 69-140 9-92 (305)
238 PF08659 KR: KR domain; Inter 54.3 80 0.0017 25.3 7.6 52 72-123 4-60 (181)
239 PRK12828 short chain dehydroge 54.0 1.2E+02 0.0026 24.7 9.1 55 69-123 8-63 (239)
240 PRK07478 short chain dehydroge 53.9 1.1E+02 0.0024 25.5 8.8 72 69-140 7-80 (254)
241 COG0300 DltE Short-chain dehyd 53.9 1.5E+02 0.0033 25.8 10.0 68 69-139 7-80 (265)
242 cd08264 Zn_ADH_like2 Alcohol d 53.9 90 0.002 27.2 8.5 49 62-117 157-205 (325)
243 PRK06128 oxidoreductase; Provi 53.8 1.5E+02 0.0032 25.7 10.0 55 69-123 56-113 (300)
244 cd05279 Zn_ADH1 Liver alcohol 53.8 1.7E+02 0.0036 26.3 10.5 54 61-117 177-230 (365)
245 PF02887 PK_C: Pyruvate kinase 53.7 44 0.00096 24.8 5.6 84 163-267 7-90 (117)
246 PRK08192 aspartate carbamoyltr 53.4 76 0.0017 28.7 7.9 51 72-122 162-218 (338)
247 PF01262 AlaDh_PNT_C: Alanine 53.3 64 0.0014 25.6 6.8 50 71-123 22-71 (168)
248 cd08262 Zn_ADH8 Alcohol dehydr 53.3 1.4E+02 0.003 26.3 9.7 54 61-117 155-208 (341)
249 PRK05876 short chain dehydroge 53.3 1.2E+02 0.0025 26.1 9.0 54 69-122 7-61 (275)
250 PRK06181 short chain dehydroge 52.5 1.1E+02 0.0024 25.7 8.7 53 70-122 3-56 (263)
251 PRK12938 acetyacetyl-CoA reduc 52.3 1.4E+02 0.0029 24.8 9.5 54 69-122 4-59 (246)
252 cd08253 zeta_crystallin Zeta-c 52.3 1.5E+02 0.0032 25.3 10.7 54 63-119 140-193 (325)
253 PRK12831 putative oxidoreducta 52.1 72 0.0016 30.0 7.9 51 71-121 283-338 (464)
254 cd08299 alcohol_DH_class_I_II_ 52.1 1.1E+02 0.0025 27.5 9.1 54 61-117 184-237 (373)
255 PRK08278 short chain dehydroge 52.1 1.5E+02 0.0032 25.3 9.9 54 69-122 7-68 (273)
256 TIGR02817 adh_fam_1 zinc-bindi 52.1 1.1E+02 0.0025 26.6 9.0 50 68-120 149-199 (336)
257 cd05280 MDR_yhdh_yhfp Yhdh and 51.8 1.3E+02 0.0028 26.1 9.2 48 69-119 148-195 (325)
258 cd05286 QOR2 Quinone oxidoredu 51.8 1.5E+02 0.0032 25.2 10.9 56 62-120 131-186 (320)
259 PRK06348 aspartate aminotransf 51.6 1.9E+02 0.004 26.2 11.7 51 71-122 91-141 (384)
260 PRK08261 fabG 3-ketoacyl-(acyl 51.3 1.9E+02 0.0041 26.8 10.6 55 69-123 211-265 (450)
261 PRK07454 short chain dehydroge 51.3 1.3E+02 0.0029 24.7 8.9 70 70-139 8-79 (241)
262 cd05283 CAD1 Cinnamyl alcohol 51.3 1.2E+02 0.0026 26.7 9.0 52 65-120 167-218 (337)
263 PRK08217 fabG 3-ketoacyl-(acyl 51.2 1.3E+02 0.0028 24.9 8.8 54 69-122 6-60 (253)
264 PRK06949 short chain dehydroge 51.2 1.1E+02 0.0023 25.6 8.3 33 69-101 10-42 (258)
265 PRK11891 aspartate carbamoyltr 51.2 74 0.0016 29.8 7.6 51 72-122 244-300 (429)
266 cd00288 Pyruvate_Kinase Pyruva 51.0 1.6E+02 0.0035 28.0 10.0 85 47-140 359-449 (480)
267 cd05285 sorbitol_DH Sorbitol d 50.8 1.6E+02 0.0035 26.0 9.7 58 60-120 155-212 (343)
268 PRK00779 ornithine carbamoyltr 50.7 77 0.0017 28.1 7.4 47 76-122 160-209 (304)
269 PRK12429 3-hydroxybutyrate deh 50.6 1.5E+02 0.0032 24.7 9.1 54 69-122 5-59 (258)
270 cd08260 Zn_ADH6 Alcohol dehydr 50.5 1.8E+02 0.0038 25.6 10.3 52 62-117 160-211 (345)
271 PRK05866 short chain dehydroge 50.4 1.2E+02 0.0026 26.3 8.7 53 70-122 42-95 (293)
272 cd08248 RTN4I1 Human Reticulon 50.4 1.1E+02 0.0023 27.0 8.6 48 68-119 163-210 (350)
273 PRK08017 oxidoreductase; Provi 50.4 1.5E+02 0.0032 24.7 9.6 51 70-123 4-54 (256)
274 PRK07890 short chain dehydroge 50.3 1.3E+02 0.0029 25.0 8.8 54 69-122 6-60 (258)
275 PRK05867 short chain dehydroge 50.2 1.4E+02 0.003 25.0 8.8 54 69-122 10-64 (253)
276 PRK06194 hypothetical protein; 50.2 1.6E+02 0.0035 25.1 9.4 55 69-123 7-62 (287)
277 PRK12744 short chain dehydroge 50.2 1.4E+02 0.003 25.1 8.8 54 69-122 9-67 (257)
278 PRK12826 3-ketoacyl-(acyl-carr 50.1 1.4E+02 0.003 24.6 8.8 54 69-122 7-61 (251)
279 cd08276 MDR7 Medium chain dehy 50.1 1.7E+02 0.0037 25.3 10.8 54 63-120 156-209 (336)
280 cd05278 FDH_like Formaldehyde 50.0 1.3E+02 0.0029 26.4 9.1 54 62-118 162-215 (347)
281 cd05188 MDR Medium chain reduc 49.9 1.5E+02 0.0032 24.6 9.8 52 63-118 130-181 (271)
282 cd08270 MDR4 Medium chain dehy 49.8 1.5E+02 0.0033 25.3 9.3 50 67-119 132-181 (305)
283 PRK12745 3-ketoacyl-(acyl-carr 49.7 1.5E+02 0.0033 24.6 9.4 53 70-122 4-58 (256)
284 PRK06124 gluconate 5-dehydroge 49.7 1.4E+02 0.003 25.0 8.7 54 69-122 12-66 (256)
285 PRK09134 short chain dehydroge 49.4 1.6E+02 0.0034 24.7 9.9 54 69-122 10-65 (258)
286 PRK11706 TDP-4-oxo-6-deoxy-D-g 49.4 57 0.0012 29.6 6.7 53 71-123 48-100 (375)
287 PRK14807 histidinol-phosphate 49.3 1.5E+02 0.0032 26.5 9.2 52 72-124 79-130 (351)
288 PRK07035 short chain dehydroge 49.3 1.5E+02 0.0033 24.6 9.0 54 69-122 9-63 (252)
289 cd08290 ETR 2-enoyl thioester 49.3 1.2E+02 0.0027 26.5 8.7 59 63-121 142-201 (341)
290 TIGR03206 benzo_BadH 2-hydroxy 49.0 1.4E+02 0.0031 24.7 8.7 55 69-123 4-59 (250)
291 cd01011 nicotinamidase Nicotin 49.0 1.1E+02 0.0023 25.0 7.7 62 54-119 128-196 (196)
292 PF13460 NAD_binding_10: NADH( 48.9 38 0.00083 26.8 4.9 46 72-122 2-47 (183)
293 PF13580 SIS_2: SIS domain; PD 48.9 39 0.00085 25.9 4.8 35 65-99 101-137 (138)
294 cd08249 enoyl_reductase_like e 48.8 1.1E+02 0.0024 27.0 8.4 49 66-118 153-201 (339)
295 PRK09257 aromatic amino acid a 48.5 2E+02 0.0044 26.1 10.2 79 42-122 67-148 (396)
296 PRK03692 putative UDP-N-acetyl 48.4 1.3E+02 0.0027 25.9 8.1 93 81-185 69-168 (243)
297 PRK12809 putative oxidoreducta 48.3 1.2E+02 0.0027 29.8 9.1 52 70-121 311-380 (639)
298 TIGR03325 BphB_TodD cis-2,3-di 47.9 1.7E+02 0.0036 24.6 9.4 51 69-122 6-57 (262)
299 PRK13982 bifunctional SbtC-lik 47.9 27 0.00058 33.1 4.2 42 76-123 280-321 (475)
300 KOG1177 Long chain fatty acid 47.7 2.6E+02 0.0057 26.8 10.6 91 33-124 68-158 (596)
301 PLN02514 cinnamyl-alcohol dehy 47.7 1.6E+02 0.0035 26.3 9.3 55 63-120 176-230 (357)
302 TIGR03590 PseG pseudaminic aci 47.7 1.8E+02 0.0038 25.2 9.2 81 34-123 2-88 (279)
303 PRK06077 fabG 3-ketoacyl-(acyl 47.6 1.4E+02 0.003 24.8 8.4 54 69-122 7-62 (252)
304 PRK07806 short chain dehydroge 47.5 1.6E+02 0.0035 24.3 9.7 54 69-122 7-62 (248)
305 KOG0022 Alcohol dehydrogenase, 47.3 2.2E+02 0.0047 25.7 12.0 112 65-213 190-301 (375)
306 PRK14031 glutamate dehydrogena 47.2 95 0.0021 29.2 7.7 53 48-100 207-259 (444)
307 cd05284 arabinose_DH_like D-ar 47.1 1.5E+02 0.0032 26.0 8.9 50 65-118 165-215 (340)
308 cd08261 Zn_ADH7 Alcohol dehydr 47.1 2E+02 0.0043 25.2 11.0 53 61-117 153-205 (337)
309 PRK07814 short chain dehydroge 47.1 1.5E+02 0.0034 24.9 8.7 54 69-122 11-65 (263)
310 PRK02610 histidinol-phosphate 46.9 1.2E+02 0.0026 27.3 8.4 52 72-123 94-145 (374)
311 PLN02342 ornithine carbamoyltr 46.8 95 0.0021 28.2 7.4 45 78-122 204-251 (348)
312 PRK05653 fabG 3-ketoacyl-(acyl 46.8 1.6E+02 0.0035 24.1 9.5 54 69-122 6-60 (246)
313 PRK10490 sensor protein KdpD; 46.6 3.2E+02 0.007 28.2 12.1 105 72-183 254-375 (895)
314 cd08255 2-desacetyl-2-hydroxye 46.5 1.7E+02 0.0036 24.8 8.9 50 62-115 92-142 (277)
315 PRK06701 short chain dehydroge 46.2 2E+02 0.0042 24.9 10.0 54 69-122 47-102 (290)
316 TIGR02415 23BDH acetoin reduct 46.2 1.7E+02 0.0037 24.2 9.0 52 71-122 3-55 (254)
317 PRK06079 enoyl-(acyl carrier p 45.6 1.5E+02 0.0034 24.8 8.4 32 69-100 8-41 (252)
318 PRK07677 short chain dehydroge 45.6 1.8E+02 0.0038 24.3 8.8 53 70-122 3-56 (252)
319 TIGR03540 DapC_direct LL-diami 45.4 2.3E+02 0.005 25.5 11.0 51 72-123 94-144 (383)
320 PRK07550 hypothetical protein; 45.4 2.3E+02 0.005 25.5 10.6 76 44-123 67-143 (386)
321 cd08185 Fe-ADH1 Iron-containin 45.3 1.4E+02 0.003 27.2 8.5 95 94-195 4-102 (380)
322 PLN00175 aminotransferase fami 45.3 2.5E+02 0.0054 25.8 10.8 51 72-123 118-168 (413)
323 cd08238 sorbose_phosphate_red 45.3 99 0.0022 28.4 7.6 58 63-122 171-238 (410)
324 PRK06947 glucose-1-dehydrogena 45.2 1.4E+02 0.003 24.8 8.0 54 70-123 4-59 (248)
325 TIGR00658 orni_carb_tr ornithi 45.1 1.2E+02 0.0026 26.9 7.8 45 78-122 158-208 (304)
326 PRK08085 gluconate 5-dehydroge 45.0 1.8E+02 0.0039 24.2 9.0 54 69-122 10-64 (254)
327 PRK09414 glutamate dehydrogena 44.6 1.1E+02 0.0023 28.9 7.6 53 48-100 211-263 (445)
328 PRK13243 glyoxylate reductase; 44.3 1.8E+02 0.004 26.0 9.0 96 71-190 152-247 (333)
329 PRK08936 glucose-1-dehydrogena 44.2 1.9E+02 0.0042 24.2 9.8 54 69-122 8-63 (261)
330 PRK02102 ornithine carbamoyltr 44.1 1.2E+02 0.0026 27.3 7.6 51 72-122 158-216 (331)
331 CHL00194 ycf39 Ycf39; Provisio 44.0 1E+02 0.0022 27.1 7.2 31 71-101 3-33 (317)
332 TIGR01318 gltD_gamma_fam gluta 43.9 1.1E+02 0.0024 28.8 7.8 50 71-120 143-210 (467)
333 PRK07200 aspartate/ornithine c 43.9 69 0.0015 29.6 6.2 44 79-122 205-254 (395)
334 PRK06113 7-alpha-hydroxysteroi 43.8 1.9E+02 0.0041 24.1 8.7 54 69-122 12-66 (255)
335 cd08286 FDH_like_ADH2 formalde 43.6 2E+02 0.0044 25.2 9.2 51 63-117 162-213 (345)
336 PRK08264 short chain dehydroge 43.6 1.4E+02 0.0029 24.6 7.7 33 69-101 7-40 (238)
337 PF06068 TIP49: TIP49 C-termin 43.5 1.2E+02 0.0026 27.9 7.5 55 44-100 27-85 (398)
338 PRK02255 putrescine carbamoylt 43.2 1.2E+02 0.0027 27.3 7.6 45 78-122 164-214 (338)
339 COG1454 EutG Alcohol dehydroge 43.1 1.5E+02 0.0033 27.2 8.2 98 93-197 6-107 (377)
340 PRK15454 ethanol dehydrogenase 42.8 1.1E+02 0.0023 28.3 7.4 22 164-188 98-119 (395)
341 TIGR01963 PHB_DH 3-hydroxybuty 42.7 1.9E+02 0.0042 23.9 8.6 53 70-122 3-56 (255)
342 PRK08213 gluconate 5-dehydroge 42.6 2E+02 0.0044 24.0 8.9 55 69-123 13-68 (259)
343 TIGR00936 ahcY adenosylhomocys 42.6 98 0.0021 28.8 7.0 94 66-187 193-286 (406)
344 PRK12810 gltD glutamate syntha 42.6 1.3E+02 0.0029 28.2 8.2 50 71-120 145-212 (471)
345 PRK07985 oxidoreductase; Provi 42.4 2.2E+02 0.0047 24.7 9.0 54 69-122 50-106 (294)
346 cd08254 hydroxyacyl_CoA_DH 6-h 42.1 2.3E+02 0.005 24.6 10.7 56 62-121 160-215 (338)
347 COG0399 WecE Predicted pyridox 42.0 81 0.0018 28.9 6.3 54 71-124 51-104 (374)
348 PLN02591 tryptophan synthase 41.9 2.3E+02 0.0049 24.4 12.0 31 83-113 122-152 (250)
349 cd08241 QOR1 Quinone oxidoredu 41.9 2.2E+02 0.0047 24.2 10.5 55 62-119 134-188 (323)
350 COG0836 {ManC} Mannose-1-phosp 41.9 32 0.00069 30.8 3.5 55 71-141 80-138 (333)
351 PRK05693 short chain dehydroge 41.9 2.2E+02 0.0047 24.1 10.2 51 70-123 3-53 (274)
352 PRK12775 putative trifunctiona 41.8 2.2E+02 0.0047 30.0 10.0 31 71-101 432-462 (1006)
353 TIGR02853 spore_dpaA dipicolin 41.6 2.4E+02 0.0053 24.7 10.3 44 71-117 153-196 (287)
354 PRK12859 3-ketoacyl-(acyl-carr 41.5 1.9E+02 0.0041 24.3 8.4 55 69-123 7-75 (256)
355 PRK09291 short chain dehydroge 41.2 1.2E+02 0.0026 25.3 7.0 32 70-101 4-35 (257)
356 COG1587 HemD Uroporphyrinogen- 40.9 2.2E+02 0.0049 24.1 8.7 121 81-210 86-213 (248)
357 COG0826 Collagenase and relate 40.9 2.8E+02 0.0061 25.2 10.6 102 96-207 8-119 (347)
358 PF00670 AdoHcyase_NAD: S-aden 40.9 1.8E+02 0.0039 23.3 7.4 93 65-185 20-112 (162)
359 KOG2862 Alanine-glyoxylate ami 40.7 1.9E+02 0.0041 26.1 8.0 83 70-153 69-154 (385)
360 PF02310 B12-binding: B12 bind 40.5 1.1E+02 0.0023 22.4 5.9 92 82-183 18-113 (121)
361 COG0169 AroE Shikimate 5-dehyd 40.4 91 0.002 27.4 6.2 72 30-102 87-159 (283)
362 PRK04523 N-acetylornithine car 40.4 62 0.0013 29.2 5.3 45 78-122 185-236 (335)
363 TIGR03531 selenium_SpcS O-phos 40.2 2.7E+02 0.006 26.2 9.7 81 39-122 91-179 (444)
364 TIGR02379 ECA_wecE TDP-4-keto- 40.2 87 0.0019 28.5 6.3 54 71-124 48-101 (376)
365 PRK06841 short chain dehydroge 40.2 2.2E+02 0.0047 23.7 9.0 33 69-101 16-48 (255)
366 PRK07904 short chain dehydroge 40.2 2.3E+02 0.0049 23.9 9.4 53 69-121 9-65 (253)
367 PRK12562 ornithine carbamoyltr 40.1 70 0.0015 28.9 5.5 44 79-122 168-217 (334)
368 PRK05854 short chain dehydroge 40.0 2.2E+02 0.0048 24.9 8.8 73 69-141 15-91 (313)
369 cd08234 threonine_DH_like L-th 40.0 2.5E+02 0.0055 24.4 10.0 54 61-117 153-206 (334)
370 cd08265 Zn_ADH3 Alcohol dehydr 39.9 1.5E+02 0.0033 26.7 8.0 54 63-119 199-252 (384)
371 PRK09147 succinyldiaminopimela 39.9 2.9E+02 0.0062 25.0 12.3 78 43-123 64-146 (396)
372 PRK06138 short chain dehydroge 39.9 2.2E+02 0.0047 23.6 9.1 53 69-122 6-59 (252)
373 PRK04284 ornithine carbamoyltr 39.8 1.3E+02 0.0029 27.0 7.3 45 78-122 166-216 (332)
374 PRK06101 short chain dehydroge 39.7 2.1E+02 0.0046 23.7 8.3 48 70-120 3-50 (240)
375 PRK01713 ornithine carbamoyltr 39.7 50 0.0011 29.8 4.6 44 79-122 168-217 (334)
376 PRK12747 short chain dehydroge 39.7 1.9E+02 0.0041 24.1 8.0 54 69-122 5-60 (252)
377 PRK13111 trpA tryptophan synth 39.6 2.2E+02 0.0047 24.6 8.3 72 48-123 72-151 (258)
378 KOG1198 Zinc-binding oxidoredu 39.5 2.3E+02 0.005 25.6 8.8 53 64-119 154-206 (347)
379 PRK09072 short chain dehydroge 39.4 2.3E+02 0.005 23.8 8.6 33 69-101 6-38 (263)
380 PRK07576 short chain dehydroge 39.4 2.3E+02 0.0051 23.9 9.0 54 69-122 10-64 (264)
381 PRK03562 glutathione-regulated 39.3 1.1E+02 0.0024 30.0 7.3 51 71-124 402-452 (621)
382 TIGR01831 fabG_rel 3-oxoacyl-( 39.2 2.2E+02 0.0047 23.4 9.1 52 72-123 2-55 (239)
383 KOG3857 Alcohol dehydrogenase, 39.2 1E+02 0.0022 28.1 6.1 10 201-210 175-184 (465)
384 PRK06505 enoyl-(acyl carrier p 39.0 2.5E+02 0.0053 24.0 9.6 71 69-140 8-82 (271)
385 cd08263 Zn_ADH10 Alcohol dehyd 38.8 2.7E+02 0.0058 24.8 9.3 51 64-117 184-234 (367)
386 PRK12779 putative bifunctional 38.8 1.2E+02 0.0027 31.5 7.7 51 70-120 307-375 (944)
387 PRK05826 pyruvate kinase; Prov 38.7 3.5E+02 0.0076 25.7 11.2 124 83-212 263-407 (465)
388 PF02737 3HCDH_N: 3-hydroxyacy 38.7 62 0.0013 26.2 4.6 30 72-101 2-31 (180)
389 PRK07774 short chain dehydroge 38.7 2.3E+02 0.0049 23.4 9.2 53 69-121 7-60 (250)
390 PRK06290 aspartate aminotransf 38.6 3.2E+02 0.0069 25.1 10.6 51 72-123 109-159 (410)
391 PRK13581 D-3-phosphoglycerate 38.6 3.1E+02 0.0068 26.4 10.0 95 71-189 142-236 (526)
392 PRK07775 short chain dehydroge 38.6 2.5E+02 0.0053 23.9 9.2 55 69-123 11-66 (274)
393 TIGR02095 glgA glycogen/starch 38.6 1.2E+02 0.0026 28.4 7.2 28 76-103 18-45 (473)
394 PRK11749 dihydropyrimidine deh 38.5 1.6E+02 0.0034 27.6 7.9 53 68-121 273-331 (457)
395 PRK00257 erythronate-4-phospha 38.5 1.1E+02 0.0023 28.2 6.6 55 45-100 89-147 (381)
396 PLN02918 pyridoxine (pyridoxam 38.4 2.8E+02 0.006 27.0 9.5 49 70-118 137-192 (544)
397 cd08283 FDH_like_1 Glutathione 38.3 2.5E+02 0.0055 25.3 9.2 56 61-119 178-234 (386)
398 PRK06500 short chain dehydroge 38.3 2.3E+02 0.0049 23.4 9.5 51 69-122 7-58 (249)
399 cd08235 iditol_2_DH_like L-idi 38.2 2.7E+02 0.0059 24.3 11.5 54 61-117 159-212 (343)
400 PF11760 CbiG_N: Cobalamin syn 38.2 53 0.0012 23.2 3.5 48 167-214 4-51 (84)
401 TIGR03316 ygeW probable carbam 38.1 92 0.002 28.4 6.0 44 79-122 188-237 (357)
402 PRK10669 putative cation:proto 37.9 1.4E+02 0.0031 28.7 7.7 50 71-123 419-468 (558)
403 PRK12749 quinate/shikimate deh 37.9 2.3E+02 0.005 24.8 8.4 32 71-102 126-157 (288)
404 PRK07231 fabG 3-ketoacyl-(acyl 37.8 2.3E+02 0.005 23.3 9.5 33 69-101 6-38 (251)
405 PF00702 Hydrolase: haloacid d 37.8 1.4E+02 0.003 24.0 6.7 66 51-123 131-203 (215)
406 PRK08265 short chain dehydroge 37.8 2.5E+02 0.0053 23.6 9.6 52 69-122 7-58 (261)
407 TIGR03877 thermo_KaiC_1 KaiC d 37.7 1.2E+02 0.0025 25.6 6.4 55 63-117 16-74 (237)
408 cd08279 Zn_ADH_class_III Class 37.7 3E+02 0.0064 24.5 11.1 53 62-117 177-229 (363)
409 PRK08227 autoinducer 2 aldolas 37.6 2.8E+02 0.006 24.2 9.4 87 32-123 75-179 (264)
410 PRK05973 replicative DNA helic 37.6 1.5E+02 0.0034 25.2 7.0 54 63-116 59-116 (237)
411 PRK05650 short chain dehydroge 37.5 2.5E+02 0.0055 23.7 8.9 52 71-122 3-55 (270)
412 PRK14804 ornithine carbamoyltr 37.4 1.9E+02 0.0041 25.8 7.8 29 76-104 161-189 (311)
413 PRK01688 histidinol-phosphate 37.3 1.6E+02 0.0035 26.3 7.6 52 72-124 77-129 (351)
414 PRK06202 hypothetical protein; 37.3 41 0.00089 28.2 3.5 38 175-212 62-99 (232)
415 PRK03515 ornithine carbamoyltr 37.2 63 0.0014 29.2 4.8 44 79-122 168-217 (336)
416 PF13450 NAD_binding_8: NAD(P) 37.1 53 0.0012 21.8 3.4 28 76-103 3-30 (68)
417 PRK15438 erythronate-4-phospha 37.0 1.2E+02 0.0025 28.0 6.5 55 45-100 89-147 (378)
418 cd06324 PBP1_ABC_sugar_binding 36.8 2.8E+02 0.006 23.9 17.7 45 163-210 192-240 (305)
419 PRK13984 putative oxidoreducta 36.5 1.6E+02 0.0034 28.8 7.8 49 72-120 286-352 (604)
420 PRK15469 ghrA bifunctional gly 36.5 3E+02 0.0065 24.5 9.0 95 71-189 138-232 (312)
421 cd05289 MDR_like_2 alcohol deh 36.5 2.6E+02 0.0057 23.6 10.0 51 63-117 140-190 (309)
422 COG1433 Uncharacterized conser 36.4 1.9E+02 0.0041 21.9 7.3 51 81-134 54-104 (121)
423 PRK06198 short chain dehydroge 36.4 2.5E+02 0.0055 23.3 9.7 54 69-122 7-62 (260)
424 TIGR03552 F420_cofC 2-phospho- 36.3 2.3E+02 0.0049 22.8 10.7 70 111-186 61-130 (195)
425 PRK12769 putative oxidoreducta 36.3 1.6E+02 0.0035 29.1 7.9 50 71-120 329-396 (654)
426 PRK06720 hypothetical protein; 36.2 2.2E+02 0.0048 22.6 9.7 31 69-99 17-47 (169)
427 PRK07060 short chain dehydroge 36.2 2E+02 0.0044 23.6 7.7 52 69-123 10-62 (245)
428 PLN02253 xanthoxin dehydrogena 36.2 2.4E+02 0.0052 23.9 8.3 32 69-100 19-50 (280)
429 cd08550 GlyDH-like Glycerol_de 36.1 1.4E+02 0.003 26.9 6.9 34 174-210 77-110 (349)
430 cd01078 NAD_bind_H4MPT_DH NADP 36.1 2.3E+02 0.005 22.8 8.1 31 69-99 29-59 (194)
431 TIGR00511 ribulose_e2b2 ribose 36.1 2.2E+02 0.0048 25.2 8.0 56 66-122 114-173 (301)
432 CHL00200 trpA tryptophan synth 36.1 2.9E+02 0.0063 23.9 12.0 65 51-120 107-173 (263)
433 COG0075 Serine-pyruvate aminot 35.8 80 0.0017 29.1 5.2 30 72-101 83-112 (383)
434 PRK12770 putative glutamate sy 35.7 1.9E+02 0.0041 25.9 7.7 51 71-121 174-230 (352)
435 PRK06483 dihydromonapterin red 35.6 2.5E+02 0.0054 23.0 10.3 52 70-123 4-55 (236)
436 PRK12814 putative NADPH-depend 35.6 2.8E+02 0.006 27.5 9.4 53 67-120 322-380 (652)
437 PF04122 CW_binding_2: Putativ 35.3 1.6E+02 0.0034 20.6 10.0 77 44-125 4-83 (92)
438 PRK09860 putative alcohol dehy 35.3 2.1E+02 0.0046 26.2 8.1 95 93-195 8-107 (383)
439 PF11814 DUF3335: Peptidase_C3 35.3 1E+02 0.0023 25.7 5.4 26 78-103 53-78 (207)
440 cd08272 MDR6 Medium chain dehy 35.2 2.8E+02 0.0062 23.6 10.4 56 61-120 138-193 (326)
441 PRK08335 translation initiatio 35.2 1.7E+02 0.0037 25.6 7.0 47 50-100 120-168 (275)
442 PLN02583 cinnamoyl-CoA reducta 35.0 3E+02 0.0065 23.8 8.9 33 69-101 7-39 (297)
443 TIGR01829 AcAcCoA_reduct aceto 34.9 2.5E+02 0.0054 23.0 8.0 52 71-122 3-56 (242)
444 PRK10624 L-1,2-propanediol oxi 34.9 1.7E+02 0.0037 26.7 7.4 24 166-193 81-104 (382)
445 PF13380 CoA_binding_2: CoA bi 34.9 1.6E+02 0.0035 21.8 6.0 48 72-119 59-106 (116)
446 PRK05717 oxidoreductase; Valid 34.8 2.7E+02 0.0058 23.2 9.4 52 69-122 11-62 (255)
447 PRK06702 O-acetylhomoserine am 34.6 3.9E+02 0.0085 25.0 10.1 78 72-154 79-160 (432)
448 PLN02477 glutamate dehydrogena 34.6 1.9E+02 0.0041 26.9 7.6 52 49-101 186-238 (410)
449 PRK06836 aspartate aminotransf 34.6 3.5E+02 0.0076 24.5 10.6 51 72-123 99-149 (394)
450 PRK11658 UDP-4-amino-4-deoxy-L 34.4 1.2E+02 0.0025 27.6 6.2 52 72-123 51-102 (379)
451 PRK08862 short chain dehydroge 34.3 2.6E+02 0.0057 23.1 8.0 75 105-184 19-93 (227)
452 PRK05476 S-adenosyl-L-homocyst 34.3 1.4E+02 0.003 28.0 6.6 48 67-118 211-258 (425)
453 TIGR00511 ribulose_e2b2 ribose 34.2 1.7E+02 0.0036 26.0 6.9 48 50-101 126-175 (301)
454 PRK07392 threonine-phosphate d 34.2 2.1E+02 0.0045 25.6 7.8 50 72-123 77-126 (360)
455 PRK06123 short chain dehydroge 34.1 2.6E+02 0.0056 23.0 8.0 53 70-122 4-58 (248)
456 TIGR03538 DapC_gpp succinyldia 34.1 3.6E+02 0.0077 24.4 12.3 79 43-123 63-145 (393)
457 PRK11609 nicotinamidase/pyrazi 33.9 2.7E+02 0.0058 22.9 8.9 58 60-121 138-204 (212)
458 PF13478 XdhC_C: XdhC Rossmann 33.9 61 0.0013 25.0 3.7 31 72-102 1-31 (136)
459 PRK09853 putative selenate red 33.7 1.8E+02 0.0038 30.6 7.8 50 71-120 541-608 (1019)
460 PRK08912 hypothetical protein; 33.6 3.6E+02 0.0078 24.3 12.6 78 43-123 62-140 (387)
461 PRK12778 putative bifunctional 33.6 1.8E+02 0.0039 29.3 7.8 51 71-121 572-628 (752)
462 PRK08594 enoyl-(acyl carrier p 33.6 2.9E+02 0.0063 23.2 9.5 72 69-140 8-84 (257)
463 TIGR01830 3oxo_ACP_reduc 3-oxo 33.5 2.6E+02 0.0057 22.7 8.6 51 72-122 2-54 (239)
464 PHA02542 41 41 helicase; Provi 33.4 4.3E+02 0.0093 25.1 11.2 49 63-111 185-237 (473)
465 PRK08251 short chain dehydroge 33.4 2.8E+02 0.006 22.9 8.9 32 70-101 4-35 (248)
466 PRK09242 tropinone reductase; 33.4 2.8E+02 0.0062 23.0 8.8 55 69-123 10-67 (257)
467 PRK04870 histidinol-phosphate 33.2 2.7E+02 0.0058 24.8 8.3 52 72-124 84-135 (356)
468 cd08252 AL_MDR Arginate lyase 33.1 1.9E+02 0.0041 25.2 7.2 49 68-119 150-199 (336)
469 COG2085 Predicted dinucleotide 33.1 2.9E+02 0.0064 23.1 10.2 31 72-102 4-34 (211)
470 TIGR01470 cysG_Nterm siroheme 33.1 2.8E+02 0.0061 22.9 10.6 33 71-103 11-43 (205)
471 PRK15409 bifunctional glyoxyla 32.9 2.5E+02 0.0054 25.1 7.9 102 71-196 147-251 (323)
472 PRK06197 short chain dehydroge 32.9 3.3E+02 0.007 23.6 8.8 33 69-101 17-49 (306)
473 PRK09730 putative NAD(P)-bindi 32.8 2.8E+02 0.006 22.7 9.7 52 71-122 4-57 (247)
474 PRK06463 fabG 3-ketoacyl-(acyl 32.7 2.9E+02 0.0063 23.0 10.7 68 69-139 8-75 (255)
475 TIGR01292 TRX_reduct thioredox 32.7 2.2E+02 0.0049 24.2 7.6 49 71-119 143-195 (300)
476 COG1224 TIP49 DNA helicase TIP 32.7 1.2E+02 0.0027 27.8 5.7 60 36-98 34-98 (450)
477 PRK09545 znuA high-affinity zi 32.6 2.4E+02 0.0052 25.0 7.7 91 72-171 206-306 (311)
478 TIGR01317 GOGAT_sm_gam glutama 32.6 1.1E+02 0.0023 29.1 5.8 50 71-120 145-212 (485)
479 PRK08535 translation initiatio 32.6 1.7E+02 0.0038 26.0 6.8 58 65-123 118-179 (310)
480 cd05276 p53_inducible_oxidored 32.5 3.1E+02 0.0067 23.2 10.3 54 63-119 135-188 (323)
481 PRK14805 ornithine carbamoyltr 32.4 1.7E+02 0.0037 25.9 6.7 24 79-102 158-181 (302)
482 PRK12726 flagellar biosynthesi 32.4 2.6E+02 0.0056 26.0 7.9 77 41-124 212-294 (407)
483 PRK09754 phenylpropionate diox 32.3 3.7E+02 0.008 24.4 9.2 49 72-120 147-205 (396)
484 PRK05872 short chain dehydroge 32.3 3.1E+02 0.0068 23.6 8.4 32 69-100 10-41 (296)
485 PF03446 NAD_binding_2: NAD bi 32.3 1.9E+02 0.0041 22.7 6.4 45 72-119 4-48 (163)
486 PRK08340 glucose-1-dehydrogena 32.2 2.8E+02 0.006 23.2 7.9 30 71-100 3-32 (259)
487 PRK10358 putative rRNA methyla 32.2 59 0.0013 25.8 3.4 25 76-101 11-35 (157)
488 PLN02494 adenosylhomocysteinas 32.1 2.2E+02 0.0048 27.1 7.6 93 66-186 252-344 (477)
489 KOG1197 Predicted quinone oxid 32.0 2.4E+02 0.0051 24.8 7.1 55 60-117 139-193 (336)
490 smart00822 PKS_KR This enzymat 32.0 2.2E+02 0.0049 21.4 8.8 52 71-122 3-59 (180)
491 PRK07366 succinyldiaminopimela 32.0 3.8E+02 0.0083 24.1 10.1 77 44-123 68-145 (388)
492 TIGR01327 PGDH D-3-phosphoglyc 31.9 2.8E+02 0.0061 26.6 8.6 103 71-196 140-244 (525)
493 PRK01438 murD UDP-N-acetylmura 31.9 1.9E+02 0.0041 27.1 7.4 49 72-120 19-69 (480)
494 PRK07856 short chain dehydroge 31.8 3E+02 0.0065 22.8 8.2 33 69-101 7-39 (252)
495 cd08191 HHD 6-hydroxyhexanoate 31.8 3E+02 0.0066 25.1 8.5 20 174-195 79-98 (386)
496 KOG4175 Tryptophan synthase al 31.7 3.1E+02 0.0067 23.0 11.0 69 38-113 101-169 (268)
497 PRK08339 short chain dehydroge 31.6 3.2E+02 0.0069 23.1 8.5 32 69-100 9-40 (263)
498 PRK07023 short chain dehydroge 31.6 2.6E+02 0.0055 23.1 7.5 48 71-122 4-51 (243)
499 cd08232 idonate-5-DH L-idonate 31.5 2.3E+02 0.005 24.7 7.6 48 67-117 165-212 (339)
500 PRK11914 diacylglycerol kinase 31.4 1.9E+02 0.0041 25.3 6.9 58 40-101 14-73 (306)
No 1
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.8e-66 Score=442.97 Aligned_cols=266 Identities=55% Similarity=0.914 Sum_probs=252.1
Q ss_pred HHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 023814 9 KDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (276)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a 88 (276)
+.+.+.+++|||++++++....+++||+|+|++||+||.|||.|.+|+.+|+++|.+.||.+ ||++||||+|++||+.|
T Consensus 3 ~~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~t-IVE~TSGNTGI~LA~va 81 (300)
T COG0031 3 ESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGT-IVEATSGNTGIALAMVA 81 (300)
T ss_pred cchHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCCE-EEEcCCChHHHHHHHHH
Confidence 45778899999999999988878999999999999999999999999999999999999976 99999999999999999
Q ss_pred HHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCC-hhHHHHHHHHHHHhCCC-ccccCCCCCCcchHhhhhchHHH
Q 023814 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVG-FEGFVKKGEEILNRTPN-GYILGQFENPANPEIHYETTGPE 166 (276)
Q Consensus 89 ~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~E 166 (276)
+.+|+++++|||++.+++|++.|++|||+|+.++...+ +..+.+++++++++.++ .++.+||+||.|+++||.|++.|
T Consensus 82 a~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~E 161 (300)
T COG0031 82 AAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPE 161 (300)
T ss_pred HHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHH
Confidence 99999999999999999999999999999999997444 78899999999999877 67788999999999999999999
Q ss_pred HHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcccccccCCCCCCcccccccccCeEE
Q 023814 167 IWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246 (276)
Q Consensus 167 i~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~d~~~ 246 (276)
|++|+++.+|++|+++|||||++|++++||+.+|++++++|||++|+.+..+. .++.++||+.+++|..++.+.+|+++
T Consensus 162 I~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~-g~~~i~GIG~~~ip~~~~~~~iD~v~ 240 (300)
T COG0031 162 IWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE-GPHKIEGIGAGFVPENLDLDLIDEVI 240 (300)
T ss_pred HHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCC-CCcccCCCCCCcCCcccccccCceEE
Confidence 99999888999999999999999999999999999999999999998777666 88999999999999888889999999
Q ss_pred EeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 247 TVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 247 ~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
.|+|+|+++++++|+++||+++++|||+++
T Consensus 241 ~V~d~~A~~~~r~La~~eGilvG~SsGA~~ 270 (300)
T COG0031 241 RVSDEEAIATARRLAREEGLLVGISSGAAL 270 (300)
T ss_pred EECHHHHHHHHHHHHHHhCeeecccHHHHH
Confidence 999999999999999999999999999874
No 2
>PLN03013 cysteine synthase
Probab=100.00 E-value=4.7e-65 Score=461.39 Aligned_cols=270 Identities=66% Similarity=1.111 Sum_probs=253.1
Q ss_pred hhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 023814 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (276)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~ 86 (276)
+++++.+.+++|||++++.++...+.+||+|+|++|||||||||+|.+++..++++|.+.||+++||++|+||||+|+|+
T Consensus 113 ~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~ 192 (429)
T PLN03013 113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAF 192 (429)
T ss_pred HHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHH
Confidence 56789999999999999999887778999999999999999999999999999999999998666999999999999999
Q ss_pred HHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHH
Q 023814 87 IAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPE 166 (276)
Q Consensus 87 ~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (276)
+|+.+|++++||||+++++.|+++|+.+||+|+.+++..+++++++.+++++++.++++|++||+||.|+++||+|+|+|
T Consensus 193 ~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~E 272 (429)
T PLN03013 193 IAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPE 272 (429)
T ss_pred HHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876557788999999988866789999999999997799999999
Q ss_pred HHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcccccccCCCCCCcccccccccCeEE
Q 023814 167 IWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246 (276)
Q Consensus 167 i~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~d~~~ 246 (276)
|++|++++||+||+|+|+||+++|+++++|+.+|++|||||||++++.+.++++.++.++|++.+..|+.++..++|+++
T Consensus 273 I~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~vv 352 (429)
T PLN03013 273 IWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVI 352 (429)
T ss_pred HHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEEE
Confidence 99999778999999999999999999999999999999999999998887777777888999998888888888999999
Q ss_pred EeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 247 TVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 247 ~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
.|+|+|+++++++|++++|+++|||||+++
T Consensus 353 ~VsD~ea~~a~r~La~~eGi~vG~SSGAal 382 (429)
T PLN03013 353 AISSEEAIETAKQLALKEGLMVGISSGAAA 382 (429)
T ss_pred EECHHHHHHHHHHHHHHcCCEEecCHHHHH
Confidence 999999999999999999999999999864
No 3
>PLN02565 cysteine synthase
Probab=100.00 E-value=1.9e-64 Score=448.78 Aligned_cols=270 Identities=75% Similarity=1.186 Sum_probs=248.0
Q ss_pred hhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 023814 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (276)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~ 86 (276)
..+.+...+++|||++++.++...+.+||+|+|++|||||||||+|.+++..+.++|.+.+|.+.||++|+||||+|+|+
T Consensus 5 ~~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~ 84 (322)
T PLN02565 5 IAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAF 84 (322)
T ss_pred hhhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHH
Confidence 44578899999999999887665567999999999999999999999999999999988888667999999999999999
Q ss_pred HHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHH
Q 023814 87 IAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPE 166 (276)
Q Consensus 87 ~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (276)
+|+++|++|+||||+++++.|+++|+.|||+|+.+++..+++++.+.+++++++.++.||++||+||.|+..||+|+++|
T Consensus 85 ~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~E 164 (322)
T PLN02565 85 MAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPE 164 (322)
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875556788899999988765789999999999987899999999
Q ss_pred HHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcccccccCCCCCCcccccccccCeEE
Q 023814 167 IWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246 (276)
Q Consensus 167 i~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~d~~~ 246 (276)
|++|+++.||+||+|+|+||+++|++++||+.+|++|||+|||++|+++.++++.++.+++++.+..|..+..+.+|+++
T Consensus 165 i~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~v 244 (322)
T PLN02565 165 IWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVV 244 (322)
T ss_pred HHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCCcCCHhHCCEEE
Confidence 99999767999999999999999999999999999999999999998887777777788999887667666667899999
Q ss_pred EeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 247 TVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 247 ~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
.|+|+|+++++++|++++|+++|||||+++
T Consensus 245 ~V~d~ea~~a~~~l~~~~gi~vg~ssga~l 274 (322)
T PLN02565 245 QVSSDEAIETAKLLALKEGLLVGISSGAAA 274 (322)
T ss_pred EECHHHHHHHHHHHHHHhCcEEeccHHHHH
Confidence 999999999999999999999999999874
No 4
>PLN00011 cysteine synthase
Probab=100.00 E-value=1.2e-62 Score=438.46 Aligned_cols=276 Identities=74% Similarity=1.157 Sum_probs=251.6
Q ss_pred CccccchhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChH
Q 023814 1 MEDKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNT 80 (276)
Q Consensus 1 ~~~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~ 80 (276)
|++.+-..+.+...+++|||+++++++...|.+||+|+|++|||||||||++.+++..++++|.+.|+..+||++|+|||
T Consensus 1 ~~~~~~~~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~ 80 (323)
T PLN00011 1 MEDRCLIKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNT 80 (323)
T ss_pred CcchhhHHhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChH
Confidence 67777788889999999999999998876668999999999999999999999999999999999888556999999999
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhh
Q 023814 81 GIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHY 160 (276)
Q Consensus 81 g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (276)
|+|+|++|+.+|++|+||||+++++.|+++|+.+||+|+.++.....++.++.+++++++.++++|++||+|+.++..||
T Consensus 81 g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~ 160 (323)
T PLN00011 81 GIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHY 160 (323)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHH
Confidence 99999999999999999999999999999999999999999865444566788888888765788899999999887799
Q ss_pred hchHHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcccccccCCCCCCccccccc
Q 023814 161 ETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVA 240 (276)
Q Consensus 161 ~t~~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~ 240 (276)
.++++||++|+.+.||+||+|+|+||+++|+++++|+.+|++|||||||++++++..+++..+.+++++.+..|..+...
T Consensus 161 ~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~ 240 (323)
T PLN00011 161 RTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLT 240 (323)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCcccChh
Confidence 99999999999668999999999999999999999999999999999999998887777777778888887667666677
Q ss_pred ccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 241 MLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 241 ~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
.+|+++.|+|+|+++++++|++++|+++|||||++|
T Consensus 241 ~~d~~v~V~d~e~~~a~~~l~~~~Gi~~~~ssga~l 276 (323)
T PLN00011 241 IVDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAA 276 (323)
T ss_pred hCCeEEEECHHHHHHHHHHHHHhcCCeEcccHHHHH
Confidence 899999999999999999999999999999999874
No 5
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=1.6e-62 Score=442.54 Aligned_cols=269 Identities=58% Similarity=0.980 Sum_probs=247.9
Q ss_pred hhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 023814 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (276)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~ 86 (276)
+++++.+.+++|||+++++++...|++||+|+|++|||||||||++.+++.+++++|.+.||.++||++|+||||+|+|+
T Consensus 49 ~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~ 128 (368)
T PLN02556 49 IKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAF 128 (368)
T ss_pred hhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHH
Confidence 45788999999999999999877789999999999999999999999999999999999998767999999999999999
Q ss_pred HHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHH
Q 023814 87 IAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPE 166 (276)
Q Consensus 87 ~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (276)
+|+.+|++|+||||++++..|+++|+.+||+|+.+++..++...++.+.+++++.++++|++||+||.++++||.++++|
T Consensus 129 ~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~E 208 (368)
T PLN02556 129 MAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPE 208 (368)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999864445578888888888877889999999999987799999999
Q ss_pred HHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcccccccCCCCCCcccccccccCeEE
Q 023814 167 IWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246 (276)
Q Consensus 167 i~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~d~~~ 246 (276)
|++|+.+.+|+||+|+|||||++|+++++|+.+|++|||||||++++.+..+++..+.+++++.+..|..++..++|+++
T Consensus 209 I~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~~v 288 (368)
T PLN02556 209 IWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVL 288 (368)
T ss_pred HHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCeeeeeccCCCCccccchhhCCeEE
Confidence 99998668999999999999999999999999999999999999998777777666777888877667777778999999
Q ss_pred EeCHHHHHHHHHHHHHHcCCeeecCcccc
Q 023814 247 TVSSEEAIETSKLLALKEGLLVRLCFKYC 275 (276)
Q Consensus 247 ~v~d~e~~~a~~~l~~~eGi~~~pss~~a 275 (276)
.|+|+|+++++++|++++|+++|||||++
T Consensus 289 ~Vsd~ea~~a~r~l~~~eGi~vg~ssgA~ 317 (368)
T PLN02556 289 EVSSEDAVNMARELALKEGLMVGISSGAN 317 (368)
T ss_pred EECHHHHHHHHHHHHHHcCCEEecCHHHH
Confidence 99999999999999999999999999985
No 6
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=9.8e-62 Score=429.04 Aligned_cols=264 Identities=59% Similarity=0.973 Sum_probs=241.5
Q ss_pred hcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHc
Q 023814 12 TELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASR 91 (276)
Q Consensus 12 ~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~ 91 (276)
...+++|||+++++|+...|.+||+|+|++|||||||+|++.+++..++++|.+.++++ |+++|+||||+|+|++|+++
T Consensus 2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~~~ 80 (299)
T TIGR01136 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDT-IIEATSGNTGIALAMVAAAK 80 (299)
T ss_pred ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCCE-EEEeCCChHHHHHHHHHHHc
Confidence 45789999999999998888899999999999999999999999999999998777765 99999999999999999999
Q ss_pred CCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHHHHhhh
Q 023814 92 GYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDS 171 (276)
Q Consensus 92 g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~ 171 (276)
|++|+||||+++++.|+++|+.+||+|+.++++.+++++.+.+++++++.++++++++|+|+.++..||+++++||++|+
T Consensus 81 G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql 160 (299)
T TIGR01136 81 GYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT 160 (299)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999997655788999999998876467899999999986679999999999999
Q ss_pred CCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcccccccCCCCCCcccccccccCeEEEeCHH
Q 023814 172 GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSE 251 (276)
Q Consensus 172 ~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~d~~~~v~d~ 251 (276)
+++||+||+|+|+||+++|++.+|++.+|.+|||+|||++++++....+....+.+++.+..|+.+..+++|+++.|+|+
T Consensus 161 ~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~ 240 (299)
T TIGR01136 161 DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDE 240 (299)
T ss_pred CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHH
Confidence 76799999999999999999999999999999999999999888766555556677777767777777889999999999
Q ss_pred HHHHHHHHHHHHcCCeeecCccccC
Q 023814 252 EAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 252 e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
|+++++++|++++|+++|||||+++
T Consensus 241 e~~~a~~~l~~~~gi~~e~ssaa~~ 265 (299)
T TIGR01136 241 DAIETARRLAREEGILVGISSGAAV 265 (299)
T ss_pred HHHHHHHHHHHHhCceEcchHHHHH
Confidence 9999999999999999999999864
No 7
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=1.3e-61 Score=426.68 Aligned_cols=261 Identities=42% Similarity=0.679 Sum_probs=233.2
Q ss_pred hhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 023814 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (276)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~ 86 (276)
.+++|...+++|||+++++|+...|.+||+|+|++|||||||||++.+++.+++++|.+.++++ ||++|+||||+|+|+
T Consensus 2 ~~~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~-vv~aSsGN~g~alA~ 80 (296)
T PRK11761 2 AYPTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDT-LIEATSGNTGIALAM 80 (296)
T ss_pred ccccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCCE-EEEeCCChHHHHHHH
Confidence 3567888999999999999988778899999999999999999999999999999998888755 999999999999999
Q ss_pred HHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHH
Q 023814 87 IAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPE 166 (276)
Q Consensus 87 ~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (276)
+|+.+|++|+||||+++++.|++.|+.+||+|+.++...+++++.+.+++++++. +++|++||+|+.++..||.|+++|
T Consensus 81 ~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~E 159 (296)
T PRK11761 81 IAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPE 159 (296)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHH
Confidence 9999999999999999999999999999999999996556888888899988876 789999999999987789999999
Q ss_pred HHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcccccccCCCCCCcccccccccCeEE
Q 023814 167 IWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246 (276)
Q Consensus 167 i~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~d~~~ 246 (276)
|++|+++.+|+||+|+|+||+++|++++||+++|++|||+|||++++.+.+ +.++.....+..++...+|+++
T Consensus 160 i~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g-------~~~~~~~~~~~~~~~~~vd~~v 232 (296)
T PRK11761 160 IWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPG-------IRRWPEEYLPKIFDASRVDRVL 232 (296)
T ss_pred HHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCcC-------CCCCCCCcCCcccChhhCCEEE
Confidence 999997679999999999999999999999999999999999998876532 1111122233444567899999
Q ss_pred EeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 247 TVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 247 ~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
.|+|+|+++++++|++++|+++|||||++|
T Consensus 233 ~V~d~e~~~a~~~l~~~~gi~ve~ssga~l 262 (296)
T PRK11761 233 DVSQQEAENTMRRLAREEGIFCGVSSGGAV 262 (296)
T ss_pred EECHHHHHHHHHHHHHHhCceEchhHHHHH
Confidence 999999999999999999999999999874
No 8
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=3.3e-61 Score=425.61 Aligned_cols=263 Identities=60% Similarity=0.958 Sum_probs=238.0
Q ss_pred hcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHc
Q 023814 12 TELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASR 91 (276)
Q Consensus 12 ~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~ 91 (276)
..++++|||+++++ ....|.+||+|+|++|||||||||++.+++..+.++|++.++.+ |+++|+||||+|+|++|+++
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~~~ 79 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKT-IVEPTSGNTGIALAMVAAAR 79 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCCE-EEEeCCChhHHHHHHHHHHc
Confidence 45789999999998 45567899999999999999999999999999999998777755 99999999999999999999
Q ss_pred CCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCC-ccccCCCCCCcchHhhhhchHHHHHhh
Q 023814 92 GYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN-GYILGQFENPANPEIHYETTGPEIWND 170 (276)
Q Consensus 92 g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~Ei~~q 170 (276)
|++|+||||+++++.|++.|+.+||+|+.+++..++.++.+.+++++++.++ +++++||+||.++..||.|+++||++|
T Consensus 80 Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 159 (298)
T TIGR01139 80 GYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRD 159 (298)
T ss_pred CCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999754456788889998887643 458999999998778999999999999
Q ss_pred hCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcccccccCCCCCCcccccccccCeEEEeCH
Q 023814 171 SGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSS 250 (276)
Q Consensus 171 ~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~d~~~~v~d 250 (276)
+++.||+||+|+|+||+++|++.+|++++|++|||+|||.+++.+...+..++.+++++.+..+..++...+|+++.|+|
T Consensus 160 ~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d 239 (298)
T TIGR01139 160 TDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSD 239 (298)
T ss_pred hCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECH
Confidence 97679999999999999999999999999999999999999987776666666778888776677777778999999999
Q ss_pred HHHHHHHHHHHHHcCCeeecCccccC
Q 023814 251 EEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 251 ~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
+|+++++++|+++|||++|||||+++
T Consensus 240 ~e~~~a~~~l~~~~gi~~~pssga~l 265 (298)
T TIGR01139 240 EEAIETARRLAAEEGILVGISSGAAV 265 (298)
T ss_pred HHHHHHHHHHHHhcCceEcccHHHHH
Confidence 99999999999999999999999864
No 9
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-62 Score=427.45 Aligned_cols=266 Identities=23% Similarity=0.298 Sum_probs=240.7
Q ss_pred ccchhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 023814 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (276)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a 83 (276)
....+.+++..+.+|||++++.|++.+|.+||+|+|++||+||||.|||++.++.+.+++.. ..+||++|+||||++
T Consensus 12 i~~A~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~---~~gViaaSaGNHaQG 88 (347)
T COG1171 12 ILAAAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEER---AAGVIAASAGNHAQG 88 (347)
T ss_pred HHHHHHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhh---cCceEEecCCcHHHH
Confidence 34567899999999999999999999999999999999999999999999999987533221 344999999999999
Q ss_pred HHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhch
Q 023814 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (276)
Q Consensus 84 ~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (276)
+|++|+++|+|++||||+++|+.|++.++.|||+|+.++. +|+++.+.+.++++++ ++.|++|||+|+.+ +||+|+
T Consensus 89 vA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~--~~dda~~~a~~~a~~~-G~~~i~pfD~p~vi-AGQGTi 164 (347)
T COG1171 89 VAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGD--NFDDAYAAAEELAEEE-GLTFVPPFDDPDVI-AGQGTI 164 (347)
T ss_pred HHHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEEeCCCCCccee-ecccHH
Confidence 9999999999999999999999999999999999999994 6999999999999998 89999999999998 699999
Q ss_pred HHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcccc----CC-CC-----cccccccCCCCC-
Q 023814 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GG-QP-----GKHLIQGIGAGV- 232 (276)
Q Consensus 164 ~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~----~~-~~-----~~~~~~gi~~~~- 232 (276)
+.||++|++..||+||||+|+||+++|++.++|...|++|||||||++++++. .| .+ ..+.++|+++..
T Consensus 165 ~lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~ 244 (347)
T COG1171 165 ALEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRP 244 (347)
T ss_pred HHHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHHHHHcCCceeecCCCCccccccccCCC
Confidence 99999999655799999999999999999999999999999999999998754 34 22 345678887643
Q ss_pred --CcccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 233 --IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 233 --~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
.+|.+.++++|+++.|+|+|+.++++.+++++++++||+|++++
T Consensus 245 g~~tf~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGAlal 290 (347)
T COG1171 245 GDLTFEILRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGALAL 290 (347)
T ss_pred CHHHHHHHHHcCCcEEEECHHHHHHHHHHHHhcCCeeccccHHHHH
Confidence 57888999999999999999999999999999999999999864
No 10
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=1.8e-60 Score=418.42 Aligned_cols=257 Identities=40% Similarity=0.706 Sum_probs=230.3
Q ss_pred HhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHH
Q 023814 11 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAAS 90 (276)
Q Consensus 11 i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~ 90 (276)
|...+++|||+++++++...|.+||+|+|++|||||||||++.+++..++++|++.++++ ||++|+||||+|+|++|++
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~~ 80 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDV-LIEATSGNTGIALAMIAAL 80 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCCE-EEEECCChHHHHHHHHHHH
Confidence 466799999999999988888999999999999999999999999999999998888765 9999999999999999999
Q ss_pred cCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHHHHhh
Q 023814 91 RGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWND 170 (276)
Q Consensus 91 ~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q 170 (276)
+|++|+||||+++++.|++.|+.+||+|+.++...+++++.+.+++++++. +.+|++||+|+.++..||.++++||++|
T Consensus 81 ~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q 159 (290)
T TIGR01138 81 KGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRG-EGKLLDQFNNPDNPYAHYTSTGPEIWQQ 159 (290)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC-CCCCCCccCCcccHHHHhHhHHHHHHHH
Confidence 999999999999999999999999999999987556888889999998886 4568899999999876789999999999
Q ss_pred hCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcccccccCCCCCCcccccccccCeEEEeCH
Q 023814 171 SGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSS 250 (276)
Q Consensus 171 ~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~d~~~~v~d 250 (276)
+++++|+||+|+|+||+++|++.+||+++|++|||+|||.+++.+.+ +.+++.+..|..+....+|+++.|+|
T Consensus 160 ~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g-------~~~~~~~~~~~~~~~~~~d~~v~V~d 232 (290)
T TIGR01138 160 TGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPG-------IRRWPTEYLPGIFDASLVDRVLDIHQ 232 (290)
T ss_pred cCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccC-------CCCCCCCcCCcccChhhCcEEEEECH
Confidence 97679999999999999999999999999999999999999866532 12233333344455667999999999
Q ss_pred HHHHHHHHHHHHHcCCeeecCccccC
Q 023814 251 EEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 251 ~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
+|+++++++|++++|+++|||||++|
T Consensus 233 ~e~~~a~~~l~~~~gi~~g~ssga~l 258 (290)
T TIGR01138 233 RDAENTMRELAVREGIFCGVSSGGAV 258 (290)
T ss_pred HHHHHHHHHHHHHhCceEcHhHHHHH
Confidence 99999999999999999999999864
No 11
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=1.7e-59 Score=420.02 Aligned_cols=269 Identities=44% Similarity=0.713 Sum_probs=234.4
Q ss_pred hhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 023814 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (276)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~ 86 (276)
+++.+.+.+++|||++++++++.+|.+||+|+|++|||||||+|++.+++..++++|++.++.+ ||++|+||||+|+|+
T Consensus 3 ~~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~~-vv~aSsGN~g~alA~ 81 (330)
T PRK10717 3 IFEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGGT-IVEGTAGNTGIGLAL 81 (330)
T ss_pred hhhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCCE-EEEeCCcHHHHHHHH
Confidence 4678899999999999999998888999999999999999999999999999999998888755 999999999999999
Q ss_pred HHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCC------ChhHHHHHHHHHHHhC-CCccccCCCCCCcchHhh
Q 023814 87 IAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAV------GFEGFVKKGEEILNRT-PNGYILGQFENPANPEIH 159 (276)
Q Consensus 87 ~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~------~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~g 159 (276)
+|+++|++|+||||+++++.|+++|+.+||+|+.++... ..+.+.+.+.++.++. .+++|++||+||.++..|
T Consensus 82 ~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (330)
T PRK10717 82 VAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAH 161 (330)
T ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHH
Confidence 999999999999999999999999999999999998531 1223344445544443 268899999999987779
Q ss_pred hhchHHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcccc---CCC---CcccccccCCCCCC
Q 023814 160 YETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN---GGQ---PGKHLIQGIGAGVI 233 (276)
Q Consensus 160 ~~t~~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~---~~~---~~~~~~~gi~~~~~ 233 (276)
|.|+++||++|++..+|+||+|+|+||+++|++++|++.+|+++||+|||++++.+. .+. ...+.+++++.+..
T Consensus 162 ~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~ 241 (330)
T PRK10717 162 YETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGRI 241 (330)
T ss_pred HHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCCcCCCCCcccCcCCCCcC
Confidence 999999999999767999999999999999999999999999999999999985332 122 23467788888766
Q ss_pred cccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 234 PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 234 ~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
++.+....+|+++.|+|+|+++++++|++++||++|||||+++
T Consensus 242 ~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vepssga~l 284 (330)
T PRK10717 242 TANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGINV 284 (330)
T ss_pred CcccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEeecHHHHH
Confidence 6666666789999999999999999999999999999999864
No 12
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=2.2e-59 Score=424.30 Aligned_cols=269 Identities=36% Similarity=0.605 Sum_probs=231.9
Q ss_pred hhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 023814 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (276)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~ 86 (276)
....+...+++|||+++++|+...|.+||+|+|++|||||||||++.+++..+.++|.+.|+.. |+++||||||+++|+
T Consensus 43 ~~~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~-VveaSSGN~g~alA~ 121 (423)
T PLN02356 43 PRNGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGV-VTEGSAGSTAISLAT 121 (423)
T ss_pred hhhhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCE-EEEeCCHHHHHHHHH
Confidence 5567888899999999999988888999999999999999999999999999999998777655 888999999999999
Q ss_pred HHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCC-----CCCh-hHHH---HHHHHHHHh-----------------
Q 023814 87 IAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP-----AVGF-EGFV---KKGEEILNR----------------- 140 (276)
Q Consensus 87 ~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~-----~~~~-~~~~---~~a~~~~~~----------------- 140 (276)
+|+++|++|+||||+++++.|+++|+.|||+|+.+++ ..++ ..+. +.+.+++++
T Consensus 122 ~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~ 201 (423)
T PLN02356 122 VAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNG 201 (423)
T ss_pred HHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhcccccccccccccc
Confidence 9999999999999999999999999999999999964 1222 1111 234444433
Q ss_pred ---------------CCCccccCCCCCCcchHhhhhchHHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEE
Q 023814 141 ---------------TPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVY 205 (276)
Q Consensus 141 ---------------~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vi 205 (276)
.++.+|++||+|+.++.+|+..+|+||++|+++++|+||+|+||||+++|+++++|+.+|++|||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVi 281 (423)
T PLN02356 202 CISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCF 281 (423)
T ss_pred ccccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEE
Confidence 13678999999999977666667999999997789999999999999999999999999999999
Q ss_pred EEecCCCcccc-------------CCC----CcccccccCCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHHcCCee
Q 023814 206 GIEPSESAVLN-------------GGQ----PGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLV 268 (276)
Q Consensus 206 gVe~~~~~~~~-------------~~~----~~~~~~~gi~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~ 268 (276)
+|||.+++.+. .++ +.++.++|++.+..|+.++.+.+|+++.|+|+|+++++++|++++|+++
T Consensus 282 gVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~v 361 (423)
T PLN02356 282 LIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFV 361 (423)
T ss_pred EEecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCcCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeE
Confidence 99999886332 121 1256789999887788888889999999999999999999999999999
Q ss_pred ecCccccC
Q 023814 269 RLCFKYCF 276 (276)
Q Consensus 269 ~pss~~al 276 (276)
|||||+++
T Consensus 362 g~Ssaa~l 369 (423)
T PLN02356 362 GSSSAMNC 369 (423)
T ss_pred eECHHHHH
Confidence 99999864
No 13
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=4.3e-59 Score=410.89 Aligned_cols=260 Identities=57% Similarity=0.918 Sum_probs=235.2
Q ss_pred CCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcE
Q 023814 16 GHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKL 95 (276)
Q Consensus 16 ~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~ 95 (276)
|+|||+++++++...|.+||+|+|++|||||||+|++.+++..+.++|+..++.+ |+++|+||||+|+|++|+++|++|
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~~-vv~~SsGN~g~alA~~a~~~G~~~ 79 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTT-IIEPTSGNTGIGLAMVAAAKGYRF 79 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCCE-EEEeCCChHHHHHHHHHHHcCCeE
Confidence 6899999999998888999999999999999999999999999999998666654 999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHHCCCEEEEeCCCC--ChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHHHHhhhCC
Q 023814 96 IIIMPSTYSIERRIILRALGAEVYLADPAV--GFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGG 173 (276)
Q Consensus 96 ~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~ 173 (276)
+||||+++++.|+++|+.+||+|+.++... +++++.+.+++++++.++++|++||+||.+++.+++|+++||++|++.
T Consensus 80 ~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~ 159 (291)
T cd01561 80 IIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDG 159 (291)
T ss_pred EEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999998642 347888899998887657899999999999974445999999999976
Q ss_pred CcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcccccccCCCCCCcccccccccCeEEEeCHHHH
Q 023814 174 KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEA 253 (276)
Q Consensus 174 ~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~d~~~~v~d~e~ 253 (276)
.||+||+|+|+||+++|++.+|+++.|.++||+|||++++.+.......+.+++|+.+..++.+...++|+++.|+|+|+
T Consensus 160 ~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e~ 239 (291)
T cd01561 160 KVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEA 239 (291)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHHH
Confidence 79999999999999999999999999999999999999987744445567788998876677777778999999999999
Q ss_pred HHHHHHHHHHcCCeeecCccccC
Q 023814 254 IETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 254 ~~a~~~l~~~eGi~~~pss~~al 276 (276)
+++++.|++++|+++||+||++|
T Consensus 240 ~~a~~~l~~~~gi~~epssa~a~ 262 (291)
T cd01561 240 FAMARRLAREEGLLVGGSSGAAV 262 (291)
T ss_pred HHHHHHHHHHhCeeEcccHHHHH
Confidence 99999999999999999999864
No 14
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=2.3e-59 Score=427.03 Aligned_cols=265 Identities=22% Similarity=0.297 Sum_probs=235.0
Q ss_pred cccchhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 023814 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (276)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~ 82 (276)
+....++++...+++|||+++++|++..|.+||+|+|++|||||||+|++.+++..+.+.+. .++||++|+||||+
T Consensus 6 ~i~~a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNhg~ 81 (403)
T PRK08526 6 KIYQAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQK----QHGVIAASAGNHAQ 81 (403)
T ss_pred HHHHHHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECccHHHH
Confidence 45567889999999999999999998888999999999999999999999999998876543 34599999999999
Q ss_pred HHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhc
Q 023814 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (276)
Q Consensus 83 a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (276)
++|++|+++|++|+||||++++..|++.++.|||+|+.++. +++++.+.+.+++++. +++|++||+||.++ +||+|
T Consensus 82 avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~--~~~~a~~~a~~~a~~~-g~~~v~p~~~~~~i-~G~gt 157 (403)
T PRK08526 82 GVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--NYDEAYAFALEYAKEN-NLTFIHPFEDEEVM-AGQGT 157 (403)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEeeCCCCCHHHH-hhhHH
Confidence 99999999999999999999999999999999999999984 6899999999998886 78999999999887 69999
Q ss_pred hHHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCCC-
Q 023814 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV- 232 (276)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~- 232 (276)
+++||++|++ .+|+||+|+|+||+++|++.++|..+|++|||||||++++++. .+++ ..+.++|++.+.
T Consensus 158 ia~EI~eq~~-~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~ 236 (403)
T PRK08526 158 IALEMLDEIS-DLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDA 236 (403)
T ss_pred HHHHHHHhcC-CCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCCC
Confidence 9999999994 6999999999999999999999999999999999999998753 2332 345667776542
Q ss_pred --CcccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 233 --IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 233 --~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
.++.+..+++|+++.|+|+|+.++++.|++++|+++||||+++|
T Consensus 237 ~~~~~~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ve~aga~~l 282 (403)
T PRK08526 237 SPINLAIILECVDDFVQVDDEEIANAILFLLEKQKIVVEGAGAASV 282 (403)
T ss_pred CHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEeeHHHHHHH
Confidence 12333457899999999999999999999999999999998764
No 15
>PLN02970 serine racemase
Probab=100.00 E-value=5.7e-59 Score=415.61 Aligned_cols=263 Identities=21% Similarity=0.247 Sum_probs=230.5
Q ss_pred cchhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHH
Q 023814 5 CEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGL 84 (276)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~ 84 (276)
...++++...+++|||++++++++.+|.+||+|+|++|||||||||++.+++.++.+++. .++||++|+||||+|+
T Consensus 15 ~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~----~~~vv~aSsGN~g~al 90 (328)
T PLN02970 15 REARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA----EKGVVTHSSGNHAAAL 90 (328)
T ss_pred HHHHHHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc----CCeEEEECCcHHHHHH
Confidence 345678889999999999999988888899999999999999999999999999875553 3459999999999999
Q ss_pred HHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchH
Q 023814 85 AFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTG 164 (276)
Q Consensus 85 A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 164 (276)
|++|+++|++|+||||+++++.|++.|+.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+++ ||+|++
T Consensus 91 A~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~la~~~-g~~~~~~~~n~~~~~-g~~t~g 166 (328)
T PLN02970 91 ALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--TVESREAVAARVQQET-GAVLIHPYNDGRVIS-GQGTIA 166 (328)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcchhh-ehHHHH
Confidence 999999999999999999999999999999999999985 5788888899998874 889999999999885 999999
Q ss_pred HHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCCC--C
Q 023814 165 PEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV--I 233 (276)
Q Consensus 165 ~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~--~ 233 (276)
+||++|++ .||+||+|+|+||+++|++++||+.+|++|||+|||.+++++. .+++ .++..++++.+. .
T Consensus 167 ~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~~~~~ 245 (328)
T PLN02970 167 LEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGLRASLGDL 245 (328)
T ss_pred HHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHHHHHHcCCceeCCCCCCccccccCCcCHH
Confidence 99999995 6999999999999999999999999999999999999997653 2321 234555665431 1
Q ss_pred cccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 234 PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 234 ~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
++....+.+|+++.|+|+|+++++++|++++|+++|||||++|
T Consensus 246 ~~~~~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ve~s~aa~l 288 (328)
T PLN02970 246 TWPVVRDLVDDVITVDDKEIIEAMKLCYERLKVVVEPSGAIGL 288 (328)
T ss_pred HHHHHHhhCCEEEEECHHHHHHHHHHHHHhcCcEEeHHHHHHH
Confidence 2334567899999999999999999999999999999999874
No 16
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=1e-58 Score=424.84 Aligned_cols=265 Identities=24% Similarity=0.304 Sum_probs=235.5
Q ss_pred cccchhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 023814 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (276)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~ 82 (276)
+....+.++...+++|||+++++|++..|.+||+|+|++|||||||+|++.+++..+.+.+. ..+||++|+||||+
T Consensus 11 ~i~~a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~----~~gvv~aSsGN~g~ 86 (406)
T PRK06382 11 DILYAKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL----RNGVITASAGNHAQ 86 (406)
T ss_pred HHHHHHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc----CCeEEEECCCHHHH
Confidence 34457789999999999999999998888999999999999999999999999988776553 23499999999999
Q ss_pred HHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhc
Q 023814 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (276)
Q Consensus 83 a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (276)
|+|++|+++|++|+||||++++..|++.++.|||+|+.++. +++++.+.+++++++. +++|++||+|+.+++ ||+|
T Consensus 87 a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~~~~a~~~a~~la~~~-~~~~v~~~~~~~~i~-g~~t 162 (406)
T PRK06382 87 GVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--DYDEAHRYADKIAMDE-NRTFIEAFNDRWVIS-GQGT 162 (406)
T ss_pred HHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCccCChHHHH-HHHH
Confidence 99999999999999999999999999999999999999984 5889999999999886 789999999999885 9999
Q ss_pred hHHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCccc----cCCCC-----cccccccCCCCC-
Q 023814 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVL----NGGQP-----GKHLIQGIGAGV- 232 (276)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~----~~~~~-----~~~~~~gi~~~~- 232 (276)
+++||++|++ .||+||+|+|+||+++|+++++|+.+|++|||||||++++++ ..+++ ..+.++|++.+.
T Consensus 163 ~~~Ei~eq~~-~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~ 241 (406)
T PRK06382 163 IGLEIMEDLP-DLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYP 241 (406)
T ss_pred HHHHHHHhcC-CCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCc
Confidence 9999999994 799999999999999999999999999999999999999875 23332 245677887653
Q ss_pred --CcccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 233 --IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 233 --~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
.++.+..+++|+++.|+|+|+.+++++|++++|+++|||||+++
T Consensus 242 ~~~~~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~~epsga~~l 287 (406)
T PRK06382 242 GDLTFDIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAEPSGAVGL 287 (406)
T ss_pred cHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHHcCceechHHHHHH
Confidence 23445678999999999999999999999999999999988753
No 17
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=1.6e-58 Score=430.37 Aligned_cols=260 Identities=26% Similarity=0.320 Sum_probs=231.5
Q ss_pred HHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 023814 9 KDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (276)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a 88 (276)
.+|...+.+|||+++++|++.+|.+||+|+|++|||||||+|+|.+++..+.++.. .++||++|+||||+++|++|
T Consensus 29 ~~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~----~~GVV~aSaGNha~gvA~aA 104 (521)
T PRK12483 29 ARVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQL----ARGVITASAGNHAQGVALAA 104 (521)
T ss_pred HHHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHh----cCcEEEECCCHHHHHHHHHH
Confidence 46778999999999999999899999999999999999999999999987764332 23499999999999999999
Q ss_pred HHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHHHH
Q 023814 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIW 168 (276)
Q Consensus 89 ~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 168 (276)
+++|++|+||||++++..|++.++.|||+|+.++. +|+++.+.+.+++++. +++|++||+||.++ +||+|+|+||+
T Consensus 105 ~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~--~~d~a~~~A~~la~e~-g~~~v~pfdd~~vi-aGqgTig~EI~ 180 (521)
T PRK12483 105 ARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGE--SFPDALAHALKLAEEE-GLTFVPPFDDPDVI-AGQGTVAMEIL 180 (521)
T ss_pred HHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeeCCCCChHHH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999984 6899999999999887 78999999999998 49999999999
Q ss_pred hhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCCC---Cccc
Q 023814 169 NDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV---IPPV 236 (276)
Q Consensus 169 ~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~---~~~~ 236 (276)
+|+++.||+||+|+|+||+++|++.++|.++|++|||||||++++++. .+++ ..+.++|++.+. .++.
T Consensus 181 eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~ 260 (521)
T PRK12483 181 RQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFE 260 (521)
T ss_pred HHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHH
Confidence 999656999999999999999999999999999999999999998764 2322 234567776543 3455
Q ss_pred ccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 237 LDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 237 ~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
+.++++|+++.|+|+|+.+++++|++++|+++|||||+++
T Consensus 261 ~~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~vEpagAaal 300 (521)
T PRK12483 261 LCRHYVDEVVTVSTDELCAAIKDIYDDTRSITEPAGALAV 300 (521)
T ss_pred HHHHhCCEEEEECHHHHHHHHHHHHHhCCcEEeHHHHHHH
Confidence 5678999999999999999999999999999999998764
No 18
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=8.4e-59 Score=413.92 Aligned_cols=265 Identities=22% Similarity=0.301 Sum_probs=233.2
Q ss_pred cccchhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 023814 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (276)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~ 82 (276)
++...+.+|...+++|||+++++++...|.+||+|+|++|||||||||++.+++.++.+.+. .++||++|+||||+
T Consensus 5 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~----~~gvv~aSsGN~g~ 80 (322)
T PRK07476 5 DIYRARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQER----ARGVVTASTGNHGR 80 (322)
T ss_pred HHHHHHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhh----CCeEEEECCChHHH
Confidence 45567899999999999999999998888999999999999999999999999999998886 33499999999999
Q ss_pred HHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhc
Q 023814 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (276)
Q Consensus 83 a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (276)
|+|++|+++|++|+||||+++++.|++.|+.|||+|+.++. +++++.+.+.+++++. +++|++||+||.+++ ||+|
T Consensus 81 alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~~-g~~t 156 (322)
T PRK07476 81 ALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGR--SQDDAQAEVERLVREE-GLTMVPPFDDPRIIA-GQGT 156 (322)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcceee-chhH
Confidence 99999999999999999999999999999999999999984 4788899999998876 779999999999985 9999
Q ss_pred hHHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCCC-
Q 023814 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV- 232 (276)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~- 232 (276)
+++||++|++ ++|+||+|+|+||+++|++.+||..+|++|||+|||++++++. .+++ ..+..++++.+.
T Consensus 157 ~~~Ei~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~ 235 (322)
T PRK07476 157 IGLEILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIG 235 (322)
T ss_pred HHHHHHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCceeCCCCCCcccccccccc
Confidence 9999999995 6899999999999999999999999999999999999887543 2322 223445553221
Q ss_pred ----CcccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 233 ----IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 233 ----~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
.++.+....+|+++.|+|+|+++++++|++++|+++||+|++++
T Consensus 236 ~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ve~a~a~~l 283 (322)
T PRK07476 236 LDNRYTFAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVEGAGAVGI 283 (322)
T ss_pred CCcHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCceEeChhHHHH
Confidence 23345567899999999999999999999999999999998864
No 19
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-59 Score=397.66 Aligned_cols=269 Identities=65% Similarity=1.031 Sum_probs=255.5
Q ss_pred hhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 023814 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (276)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~ 86 (276)
..+...+.+|+|||+.++++.....++||+|+|.+||+||.|||.++.|+.+|+.+|.+.||++++++.||||+|+++|+
T Consensus 42 ~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~ 121 (362)
T KOG1252|consen 42 ILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAY 121 (362)
T ss_pred hhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHH
Confidence 55678899999999999998776678999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhH---HHHHHHHHHHhCCCccccCCCCCCcchHhhhhch
Q 023814 87 IAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEG---FVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (276)
Q Consensus 87 ~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (276)
+|+..|++|+++||++.+.+|+..|+++||+|++++....+.. +...+.++..+.++.+.++||.||.|+.+||.++
T Consensus 122 ~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~tt 201 (362)
T KOG1252|consen 122 MAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYETT 201 (362)
T ss_pred HHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccccc
Confidence 9999999999999999999999999999999999997666665 8889999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcc--cccccCCCCCCcccccccc
Q 023814 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGK--HLIQGIGAGVIPPVLDVAM 241 (276)
Q Consensus 164 ~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~~~~~~~--~~~~gi~~~~~~~~~~~~~ 241 (276)
+.||++|+.+.+|.+|.++|||||++|+++++|+.+|+++|++|||..|..+....+.+ +.++|||.++.|..++...
T Consensus 202 g~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~~~ 281 (362)
T KOG1252|consen 202 GPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLDTKL 281 (362)
T ss_pred cHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCccceeccccCcCccccchHH
Confidence 99999999999999999999999999999999999999999999999998777777776 8899999999999999999
Q ss_pred cCeEEEeCHHHHHHHHHHHHHHcCCeeecCcccc
Q 023814 242 LDEVITVSSEEAIETSKLLALKEGLLVRLCFKYC 275 (276)
Q Consensus 242 ~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a 275 (276)
+|+.+.+.++|++.++++|+++||+.++.|||++
T Consensus 282 vd~~~~~~~d~A~~~Ar~La~eeGll~G~SSGan 315 (362)
T KOG1252|consen 282 VDEVLKVSSDEAIEMARRLALEEGLLVGISSGAN 315 (362)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhCeeecccchHH
Confidence 9999999999999999999999999999999986
No 20
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=1.8e-58 Score=423.91 Aligned_cols=264 Identities=25% Similarity=0.370 Sum_probs=233.8
Q ss_pred ccchhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 023814 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (276)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a 83 (276)
....++++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++.++.+++. ..+||++|+||||++
T Consensus 9 i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~a 84 (404)
T PRK08198 9 IEEARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER----ARGVVAASAGNHAQG 84 (404)
T ss_pred HHHHHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECCCHHHHH
Confidence 3457788999999999999999998888999999999999999999999999998875553 345999999999999
Q ss_pred HHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhch
Q 023814 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (276)
Q Consensus 84 ~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (276)
+|++|+++|++|+||||++++..|+++++.|||+|+.++. +++++.+.+++++++. +++|++||+||.++ .||+|+
T Consensus 85 lA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~~~~~~-~g~~t~ 160 (404)
T PRK08198 85 VAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGD--VYDEALAKAQELAEET-GATFVHPFDDPDVI-AGQGTI 160 (404)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCCccHH-HHHHHH
Confidence 9999999999999999999999999999999999999973 6899999999998886 78999999999988 599999
Q ss_pred HHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCCC--
Q 023814 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV-- 232 (276)
Q Consensus 164 ~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~-- 232 (276)
|+||++|++ ++|+||+|+|+||+++|++.+||+.+|++|||||||.+++++. .+++ ..+..+|++.+.
T Consensus 161 a~EI~~q~~-~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~~ 239 (404)
T PRK08198 161 GLEILEDLP-DVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPG 239 (404)
T ss_pred HHHHHHhCC-CCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCcC
Confidence 999999994 7999999999999999999999999999999999999998763 2332 233455665432
Q ss_pred -CcccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 233 -IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 233 -~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
.++.+.++++|+++.|+|+|+.+++++|++++|+++|||||++|
T Consensus 240 ~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e~sga~~l 284 (404)
T PRK08198 240 DLTFEIIRELVDDVVTVSDEEIARAILLLLERAKLVVEGAGAVSV 284 (404)
T ss_pred HHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEehHHHHHH
Confidence 34445678999999999999999999999999999999998764
No 21
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=3.1e-58 Score=408.84 Aligned_cols=265 Identities=22% Similarity=0.286 Sum_probs=232.1
Q ss_pred cccchhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 023814 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (276)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~ 82 (276)
+....++++.+.+++|||++++++++..|.+||+|+|++|||||||||++.+++..+.+... ..+||++|+||||+
T Consensus 5 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 80 (317)
T TIGR02991 5 DIERAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR----AAGVVAASTGNHGR 80 (317)
T ss_pred HHHHHHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhcc----CCeEEEECCCHHHH
Confidence 45667899999999999999999988888899999999999999999999999988764322 23499999999999
Q ss_pred HHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhc
Q 023814 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (276)
Q Consensus 83 a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (276)
|+|++|+++|++|+||||+++++.|++.|+.|||+|+.++. +++++.+.+++++++. +++|++||+||.++ .||+|
T Consensus 81 alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~-~g~~t 156 (317)
T TIGR02991 81 ALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--SQDDAQEEVERLVADR-GLTMLPPFDHPDIV-AGQGT 156 (317)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeeCCCCChHHH-hhHHH
Confidence 99999999999999999999999999999999999999995 5788888999998876 78999999999998 59999
Q ss_pred hHHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCC--CC
Q 023814 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIG--AG 231 (276)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~--~~ 231 (276)
+++||++|++ .+|+||+|+|+||+++|++++||+++|++|||+|||++++++. .+++ .++.+++++ .+
T Consensus 157 ~a~Ei~~q~~-~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~ 235 (317)
T TIGR02991 157 LGLEVVEQMP-DLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIG 235 (317)
T ss_pred HHHHHHHhCC-CCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhccC
Confidence 9999999995 6899999999999999999999999999999999999887653 2322 234555552 22
Q ss_pred ---CCcccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 232 ---VIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 232 ---~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
..++.+..+++|+++.|+|+|+++++++|++++|+++||+|++++
T Consensus 236 ~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve~s~a~~~ 283 (317)
T TIGR02991 236 LDNRVTFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVEGAGAVGI 283 (317)
T ss_pred CCCHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEcchHHHHH
Confidence 234556778899999999999999999999999999999998764
No 22
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=1.3e-57 Score=424.82 Aligned_cols=267 Identities=43% Similarity=0.716 Sum_probs=235.2
Q ss_pred hHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 023814 8 KKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (276)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~ 87 (276)
++.+...+++|||+++++++..+|.+||+|+|++|||||||+|++.+++.++.++|++.+|++ ||++|+||||+|+|++
T Consensus 2 ~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~-vv~~ssGN~g~alA~~ 80 (454)
T TIGR01137 2 RDNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDT-IIEPTSGNTGIGLALV 80 (454)
T ss_pred ccchHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCCE-EEEeCCcHHHHHHHHH
Confidence 456778899999999999998888899999999999999999999999999999999888755 9999999999999999
Q ss_pred HHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChh---HHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchH
Q 023814 88 AASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFE---GFVKKGEEILNRTPNGYILGQFENPANPEIHYETTG 164 (276)
Q Consensus 88 a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 164 (276)
|+++|++|++|||+++++.|+.+++.+||+|+.++....++ ...+.+.+++++.++.+|++||+|+.++..||.++|
T Consensus 81 a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~ 160 (454)
T TIGR01137 81 AAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTG 160 (454)
T ss_pred HHHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhH
Confidence 99999999999999999999999999999999998542233 235667777776546788899999999877999999
Q ss_pred HHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCccccCCC------CcccccccCCCCCCccccc
Q 023814 165 PEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQ------PGKHLIQGIGAGVIPPVLD 238 (276)
Q Consensus 165 ~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~~~~------~~~~~~~gi~~~~~~~~~~ 238 (276)
+||++|+++.||+||+|+||||+++|++.+|++.+|++|||||||++++ +..+. ..++.+++++.+..|+.++
T Consensus 161 ~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 239 (454)
T TIGR01137 161 PEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSI-LAQPENLNKTGRTPYKVEGIGYDFIPTVLD 239 (454)
T ss_pred HHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCc-ccCCCcccCCCCCCccCCCCCCCCCCCcCC
Confidence 9999999767999999999999999999999999999999999999885 33321 1234677887765666677
Q ss_pred ccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 239 VAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 239 ~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
...+|+++.|+|+|+++++++|++++|+++|||||+++
T Consensus 240 ~~~~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ssg~~~ 277 (454)
T TIGR01137 240 RKVVDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAV 277 (454)
T ss_pred chhCCeEEEECHHHHHHHHHHHHHHhCccCcHHHHHHH
Confidence 78899999999999999999999999999999999864
No 23
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=6.4e-58 Score=414.92 Aligned_cols=259 Identities=20% Similarity=0.256 Sum_probs=224.1
Q ss_pred cCCCcceecccccCCCC--------ceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHcCCCCCCC-----------
Q 023814 15 IGHTPMVYLNNVVDGCV--------ARIAAKLEMMQP-CSSVKDRIAYSMIKD-----AEDKGLITPGK----------- 69 (276)
Q Consensus 15 ~~~TPl~~~~~l~~~~g--------~~v~~K~E~~~p-tGS~K~R~a~~~~~~-----a~~~g~~~~~~----------- 69 (276)
+++|||+++++++..+| .+||+|+|++|| |||||||++.+++.. +++.|.+.|+.
T Consensus 50 ~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~ 129 (404)
T cd06447 50 IIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFR 129 (404)
T ss_pred ccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhh
Confidence 99999999999887654 799999999999 999999999999864 67888887775
Q ss_pred -----eEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCc
Q 023814 70 -----TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNG 144 (276)
Q Consensus 70 -----~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 144 (276)
.+||++|+||||+|+|++|+.+|++|+||||+++++.|++.|+.+||+|+.++. +++++.+.+.+++++.++.
T Consensus 130 ~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~--~~~~a~~~a~~la~~~~~~ 207 (404)
T cd06447 130 KLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYET--DYSKAVEEGRKQAAADPMC 207 (404)
T ss_pred hcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHHCCCe
Confidence 369999999999999999999999999999999999999999999999999984 6889999999999887567
Q ss_pred cccCCCCCCcchHhhhhchHHHHHhhhCC---C-----cCEEEEecCCCcchHHHHHHHHhh-CCCcEEEEEecCCCccc
Q 023814 145 YILGQFENPANPEIHYETTGPEIWNDSGG---K-----VDAFIAGIGTGGTVTGAGRFLKEK-NPNIKVYGIEPSESAVL 215 (276)
Q Consensus 145 ~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~---~-----~d~vvvpvG~Gg~~~Gi~~~~~~~-~~~~~vigVe~~~~~~~ 215 (276)
+|+++++++..+ +||+|+++||++|+++ + ||+||+|+|+||+++|++++||+. .|+++||+|||++++.+
T Consensus 208 ~~v~~~n~~~~i-aG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~ 286 (404)
T cd06447 208 YFVDDENSRDLF-LGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCM 286 (404)
T ss_pred EeCCCCCchhHH-hhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHH
Confidence 889997555555 6999999999999952 3 458999999999999999999997 78899999999998754
Q ss_pred c----CCCC-----------cccccccCCCCC---CcccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 216 N----GGQP-----------GKHLIQGIGAGV---IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 216 ~----~~~~-----------~~~~~~gi~~~~---~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
. .+.. ..+.++||+++. .++.+.++.+|+++.|+|+|+.+++++|++++|+++|||||++|
T Consensus 287 ~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v~Vsd~ei~~a~r~La~~~gi~vepSgAa~l 365 (404)
T cd06447 287 LLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLMEPLLSGIYTVEDDELYRLLAMLKDSENIEVEPSAAAGF 365 (404)
T ss_pred HHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHHHHhCCcEEEECHHHHHHHHHHHHHHcCcEEeHHHHHHH
Confidence 2 2211 235667777654 23334567899999999999999999999999999999999874
No 24
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=8.4e-58 Score=407.93 Aligned_cols=262 Identities=26% Similarity=0.336 Sum_probs=228.7
Q ss_pred ccchhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 023814 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (276)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a 83 (276)
....+++|...+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.+... ..+|+++|+||||+|
T Consensus 14 i~~a~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~~SsGN~g~a 89 (333)
T PRK08638 14 IIEAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEK----RKGVVACSAGNHAQG 89 (333)
T ss_pred HHHHHHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhc----CCeEEEeCCcHHHHH
Confidence 4457889999999999999999988888899999999999999999999999988765332 234999999999999
Q ss_pred HHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhch
Q 023814 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (276)
Q Consensus 84 ~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (276)
+|++|+.+|++|+||||+++++.|+++++.+||+|+.+++ +++++.+.+++++++. +++|++||+||.++ .||.|+
T Consensus 90 lA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~a~~~-g~~~~~~~~~~~~~-~g~~t~ 165 (333)
T PRK08638 90 VALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGD--NFNDTIAKVEEIVEEE-GRTFIPPYDDPKVI-AGQGTI 165 (333)
T ss_pred HHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEEcCcCCCcchh-ccccHH
Confidence 9999999999999999999999999999999999999974 5889999999999886 78999999999998 499999
Q ss_pred HHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCc-----ccccccCCCCCCc
Q 023814 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQPG-----KHLIQGIGAGVIP 234 (276)
Q Consensus 164 ~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~----~~~~~-----~~~~~gi~~~~~~ 234 (276)
++||++|+ +++|+||+|+|+||+++|++.+||+.+|++|||+|||++++++. .+++. .+..++++.. .|
T Consensus 166 a~Ei~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~-~p 243 (333)
T PRK08638 166 GLEILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVS-RP 243 (333)
T ss_pred HHHHHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCC-Cc
Confidence 99999999 57999999999999999999999999999999999999987543 34332 1233455433 23
Q ss_pred ccc----cccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCcccc
Q 023814 235 PVL----DVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYC 275 (276)
Q Consensus 235 ~~~----~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a 275 (276)
..+ .++++|+++.|+|+|+++++++|++++|+++|||+|++
T Consensus 244 ~~~~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~~e~sgA~~ 288 (333)
T PRK08638 244 GNLTYEIVRELVDDIVLVSEDEIRNAMKDLIQRNKVVTEGAGALA 288 (333)
T ss_pred cHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeechhHHHH
Confidence 333 24789999999999999999999999999999998865
No 25
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=3.9e-58 Score=420.57 Aligned_cols=265 Identities=23% Similarity=0.313 Sum_probs=231.2
Q ss_pred ccchhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 023814 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (276)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a 83 (276)
....++++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++..+.+... ..+||++|+||||++
T Consensus 3 i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~gvv~aSsGN~g~a 78 (409)
T TIGR02079 3 IEAARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQL----AKGVVCASAGNHAQG 78 (409)
T ss_pred HHHHHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHH
Confidence 4557789999999999999999998888999999999999999999999999987543221 234999999999999
Q ss_pred HHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE---EeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhh
Q 023814 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY---LADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHY 160 (276)
Q Consensus 84 ~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~---~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (276)
+|++|+++|+||+||||+++++.|+++++.|||+|+ .++ .+|+++.+.+.+++++. +++|++||+||.++ .||
T Consensus 79 ~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g--~~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~~-~g~ 154 (409)
T TIGR02079 79 FAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVG--DTFDQCAAAAREHVEDH-GGTFIPPFDDPRII-EGQ 154 (409)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeC--CCHHHHHHHHHHHHHhc-CCEEeCCCCCHhHh-hhh
Confidence 999999999999999999999999999999999743 444 46899999999999886 78999999999988 499
Q ss_pred hchHHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCC
Q 023814 161 ETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAG 231 (276)
Q Consensus 161 ~t~~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~ 231 (276)
+|+++||++|++..||+||+|+|+||+++|++.++|+.+|++|||||||++++++. .+++ ..+.++|++..
T Consensus 155 ~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~ 234 (409)
T TIGR02079 155 GTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVK 234 (409)
T ss_pred HHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCC
Confidence 99999999999766999999999999999999999999999999999999998764 2332 23556777765
Q ss_pred CC---cccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 232 VI---PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 232 ~~---~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
.. ++.+...++|+++.|+|+|+.+++++|++++|+++|||||++|
T Consensus 235 ~~g~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve~agaa~l 282 (409)
T TIGR02079 235 RVGDLNFKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAEPAGALSI 282 (409)
T ss_pred CCcHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceecchHHHHH
Confidence 43 2334567899999999999999999999999999999998864
No 26
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=1.6e-57 Score=404.15 Aligned_cols=256 Identities=23% Similarity=0.269 Sum_probs=223.8
Q ss_pred CCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEE
Q 023814 17 HTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLI 96 (276)
Q Consensus 17 ~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ 96 (276)
+|||+++++++...|.+||+|+|++|||||||||++.+++.+++++|. .+++ +||++|+||||+|+|++|+.+|++|+
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~~~-~vv~aSsGN~g~alA~~a~~~G~~~~ 78 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NECV-HVVCSSGGNAGLAAAYAARKLGVPCT 78 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-ccCC-eEEEeCCcHHHHHHHHHHHHcCCCEE
Confidence 699999999988788899999999999999999999999999998884 2334 49999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHHHHhhhCC--C
Q 023814 97 IIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGG--K 174 (276)
Q Consensus 97 ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~--~ 174 (276)
||||+++++.|++.|+.+||+|+.++.. .++++.+.+++++++.++++|++||+||.+++ ||.|+++||++|+++ .
T Consensus 79 iv~p~~~~~~k~~~l~~~GA~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~~~-g~~t~~~Ei~~q~~~~~~ 156 (316)
T cd06448 79 IVVPESTKPRVVEKLRDEGATVVVHGKV-WWEADNYLREELAENDPGPVYVHPFDDPLIWE-GHSSMVDEIAQQLQSQEK 156 (316)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEECCc-hHHHHHHHHHHHHhccCCcEEeCCCCCchhhc-cccHHHHHHHHHccccCC
Confidence 9999999999999999999999999853 26677777888877654789999999999985 899999999999975 5
Q ss_pred cCEEEEecCCCcchHHHHHHHHhhC-CCcEEEEEecCCCcccc----CCCC-----cccccccCCCCCCcc---cccccc
Q 023814 175 VDAFIAGIGTGGTVTGAGRFLKEKN-PNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVIPP---VLDVAM 241 (276)
Q Consensus 175 ~d~vvvpvG~Gg~~~Gi~~~~~~~~-~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~~~~---~~~~~~ 241 (276)
||+||+|+|+||+++|++++|++.+ |+++||+|||++++++. .++. ..+.++|++.+..+. ....+.
T Consensus 157 ~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~ 236 (316)
T cd06448 157 VDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEH 236 (316)
T ss_pred CCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhc
Confidence 9999999999999999999999996 99999999999997654 2222 235667887765543 234456
Q ss_pred cCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 242 LDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 242 ~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
.|+++.|+|+|+++++++|++++||++|||||+++
T Consensus 237 ~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~ssaa~l 271 (316)
T cd06448 237 NIKSEVVSDRDAVQACLRFADDERILVEPACGAAL 271 (316)
T ss_pred CCeEEEECHHHHHHHHHHHHHHcCceechhHHHHH
Confidence 89999999999999999999999999999999874
No 27
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=8.7e-58 Score=420.12 Aligned_cols=268 Identities=23% Similarity=0.330 Sum_probs=231.7
Q ss_pred cccchhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 023814 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (276)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~ 82 (276)
++...++++...+++|||++++++++..|.+||+|+|++|||||||+|+|.+++..+.+... ..+||++|+||||+
T Consensus 11 ~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~~Vv~aSsGN~g~ 86 (420)
T PRK08639 11 DIDKAAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEEL----AAGVVCASAGNHAQ 86 (420)
T ss_pred HHHHHHHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHH
Confidence 34557789999999999999999988888999999999999999999999999988533221 23599999999999
Q ss_pred HHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeC-CCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhh
Q 023814 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD-PAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYE 161 (276)
Q Consensus 83 a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (276)
++|++|+++|++|+||||+++++.|++.++.|||+|+.+. ...+++++.+.+.+++++. +++|++||+||.++ +||+
T Consensus 87 alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~-g~~~~~~~~~~~~~-~G~~ 164 (420)
T PRK08639 87 GVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEET-GATFIPPFDDPDVI-AGQG 164 (420)
T ss_pred HHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhc-CCcccCCCCChhHh-cchh
Confidence 9999999999999999999999999999999999754332 1246899999999999886 78999999999988 5999
Q ss_pred chHHHHHhhhCCC--cCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCC
Q 023814 162 TTGPEIWNDSGGK--VDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGA 230 (276)
Q Consensus 162 t~~~Ei~~q~~~~--~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~ 230 (276)
|+|+||++|+++. ||+||+|+|+||+++|++.++|+.+|++|||||||++++++. .+.+ ..+.++|++.
T Consensus 165 tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v 244 (420)
T PRK08639 165 TVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAV 244 (420)
T ss_pred HHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeeccccc
Confidence 9999999999755 999999999999999999999999999999999999998753 2332 2455677775
Q ss_pred CCC---cccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 231 GVI---PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 231 ~~~---~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
+.. ++.+..+++|+++.|+|+|+.+++++|++++|+++|||||+++
T Consensus 245 ~~~g~~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e~sga~~l 293 (420)
T PRK08639 245 ARVGDLTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAEPAGALSI 293 (420)
T ss_pred CCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceecchHHHHH
Confidence 432 3345567899999999999999999999999999999988763
No 28
>PLN02550 threonine dehydratase
Probab=100.00 E-value=1e-57 Score=427.31 Aligned_cols=260 Identities=22% Similarity=0.302 Sum_probs=230.4
Q ss_pred HHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 023814 9 KDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (276)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a 88 (276)
.++...+.+|||+++++|++.+|.+||+|+|++|||||||+|++.+++..+.+... ..+||++|+||||+++|++|
T Consensus 101 ~~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~----~~GVV~aSaGNhAqgvA~aA 176 (591)
T PLN02550 101 AKVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQL----DKGVICSSAGNHAQGVALSA 176 (591)
T ss_pred hhhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcC----CCCEEEECCCHHHHHHHHHH
Confidence 35668899999999999999899999999999999999999999999998754332 23499999999999999999
Q ss_pred HHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHHHH
Q 023814 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIW 168 (276)
Q Consensus 89 ~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 168 (276)
+++|++|+||||++++..|++.++.|||+|+.++. +|+++.+.+.+++++. +++|++||+||.++ +||+|+|+||+
T Consensus 177 ~~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~--~~dea~~~A~~la~e~-g~~fi~pfddp~vi-aGqgTig~EI~ 252 (591)
T PLN02550 177 QRLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGD--SYDEAQAYAKQRALEE-GRTFIPPFDHPDVI-AGQGTVGMEIV 252 (591)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEECCCCChHHH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999984 5899999999999886 77899999999998 59999999999
Q ss_pred hhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCCC---Cccc
Q 023814 169 NDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV---IPPV 236 (276)
Q Consensus 169 ~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~---~~~~ 236 (276)
+|+++.+|+||+|+|+||+++|++.++|.++|++|||||||++++++. .+++ ..+.++|+.... .++.
T Consensus 253 eQl~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~ 332 (591)
T PLN02550 253 RQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFR 332 (591)
T ss_pred HHcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHH
Confidence 999656999999999999999999999999999999999999998763 3332 234566776542 2344
Q ss_pred ccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 237 LDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 237 ~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
+.++++|+++.|+|+|+.++++++++++|+++||+||+++
T Consensus 333 i~~~~vD~vV~Vsd~eI~~Ai~~l~e~~givvEpAGA~al 372 (591)
T PLN02550 333 LCRELVDGVVLVSRDAICASIKDMFEEKRSILEPAGALAL 372 (591)
T ss_pred HHHhhCCEEEEECHHHHHHHHHHHHHHCCCEEeHHHHHHH
Confidence 5678999999999999999999999999999999998764
No 29
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=1.2e-57 Score=406.58 Aligned_cols=264 Identities=20% Similarity=0.271 Sum_probs=228.7
Q ss_pred ccchhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 023814 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (276)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a 83 (276)
....++++..++++|||++++++++..|.+||+|+|++|||||||||++.+++.++.+++. ..+||++|+||||+|
T Consensus 11 i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~a 86 (321)
T PRK07048 11 VAAAAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR----RAGVVTFSSGNHAQA 86 (321)
T ss_pred HHHHHHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhc----CCcEEEeCCCHHHHH
Confidence 4557789999999999999999988788999999999999999999999999998775432 234999999999999
Q ss_pred HHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhch
Q 023814 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (276)
Q Consensus 84 ~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (276)
+|++|+.+|++|++|||+++++.|+++|+.+||+|+.++. +++++.+.+++++++. +++|++||+|+.++ .||+|+
T Consensus 87 lA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~--~~~~~~~~a~~l~~~~-g~~~~~~~~~~~~~-~g~~t~ 162 (321)
T PRK07048 87 IALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDR--YTEDREEIGRRLAEER-GLTLIPPYDHPHVI-AGQGTA 162 (321)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEECCCCCcchh-hccchH
Confidence 9999999999999999999999999999999999999985 4778888889988886 78999999999987 599999
Q ss_pred HHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCccc----cCCCC-----cccccccCCCCC--
Q 023814 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVL----NGGQP-----GKHLIQGIGAGV-- 232 (276)
Q Consensus 164 ~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~----~~~~~-----~~~~~~gi~~~~-- 232 (276)
++||++|++ .||+||+|+|+||+++|++.++|+.+|+++||||||++++++ ..++. ..+.++++....
T Consensus 163 ~~EI~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~~ 241 (321)
T PRK07048 163 AKELFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHLG 241 (321)
T ss_pred HHHHHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcccCCCCCCcccccccCCcc
Confidence 999999995 799999999999999999999999999999999999998753 23322 123344443221
Q ss_pred -CcccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 233 -IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 233 -~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
..+....+++|+++.|+|+|+++++++|++++||++||||++++
T Consensus 242 ~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps~a~~l 286 (321)
T PRK07048 242 NYTFPIIRRLVDDIVTVSDAELVDAMRFFAERMKIVVEPTGCLGA 286 (321)
T ss_pred HHHHHHHHHhCCceEEECHHHHHHHHHHHHHhCCceeccHHHHHH
Confidence 12333457899999999999999999999999999999998764
No 30
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=5e-58 Score=420.13 Aligned_cols=265 Identities=21% Similarity=0.263 Sum_probs=235.3
Q ss_pred cccchhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 023814 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (276)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~ 82 (276)
+....++++..++++|||+++++++..+|.+||+|+|++|||||||||++.+++.++.+... ..+||++|+||||+
T Consensus 9 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 84 (403)
T PRK07334 9 DIRAAAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER----ARGVIAMSAGNHAQ 84 (403)
T ss_pred HHHHHHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh----CCcEEEECCcHHHH
Confidence 45567889999999999999999988888899999999999999999999999988754432 23499999999999
Q ss_pred HHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhc
Q 023814 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (276)
Q Consensus 83 a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (276)
|+|++|+++|++|+||||+++++.|+++|+.+||+|+.++. +++++++.+++++++. +++|++||+||.++ .||.|
T Consensus 85 alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~--~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~-~g~~t 160 (403)
T PRK07334 85 GVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGE--TLDEARAHARELAEEE-GLTFVHPYDDPAVI-AGQGT 160 (403)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEecCCCCCHHHH-HhHHH
Confidence 99999999999999999999999999999999999999974 5889999999998886 78999999999988 59999
Q ss_pred hHHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcccc----CCC---CcccccccCCCC---C
Q 023814 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQ---PGKHLIQGIGAG---V 232 (276)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~----~~~---~~~~~~~gi~~~---~ 232 (276)
+++||++|++ .+|+||+|+|+||+++|++++||+.+|++|||||||++++++. ++. ..++.+++++.+ .
T Consensus 161 ~~~Ei~~q~~-~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~ 239 (403)
T PRK07334 161 VALEMLEDAP-DLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVALPCGGSTIAEGIAVKQPGQ 239 (403)
T ss_pred HHHHHHhcCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCCccCCCCCccceecCCCccH
Confidence 9999999994 7999999999999999999999999999999999999997764 211 134567888743 3
Q ss_pred CcccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 233 IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 233 ~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
.|+.++.+++|+++.|+|+|+++++++|++++|+++|||||+++
T Consensus 240 ~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~~s~a~~~ 283 (403)
T PRK07334 240 LTLEIVRRLVDDILLVSEADIEQAVSLLLEIEKTVVEGAGAAGL 283 (403)
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEechHHHHH
Confidence 45666778999999999999999999999999999999999864
No 31
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=2.6e-57 Score=404.16 Aligned_cols=255 Identities=24% Similarity=0.303 Sum_probs=225.6
Q ss_pred cccchhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 023814 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (276)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~ 82 (276)
+....+++|+.++.+|||++++.+ +||+|+|++|||||||+|++.+++..+.+.+. .++||++|+||||+
T Consensus 25 ~i~~A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~----~~~VV~aSsGN~G~ 94 (349)
T PRK08813 25 DVLAAQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGD----ERPVICASAGNHAQ 94 (349)
T ss_pred HHHHHHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC----CCeEEEECCCHHHH
Confidence 345577899999999999998765 49999999999999999999999999999886 33599999999999
Q ss_pred HHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhc
Q 023814 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (276)
Q Consensus 83 a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (276)
|+|++|+++|++|+||||+++++.|+++++.|||+|+.++. +|+++.+.+++++++. +++|++||+||.+++ ||+|
T Consensus 95 alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~--~~~~a~~~a~~la~~~-g~~~v~~~~np~~i~-G~~T 170 (349)
T PRK08813 95 GVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGN--SYDEAYAFARELADQN-GYRFLSAFDDPDVIA-GQGT 170 (349)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCccCChHHHH-HHHH
Confidence 99999999999999999999999999999999999999974 6899999999999886 889999999999995 9999
Q ss_pred hHHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcccc---CCC-----CcccccccCCCC---
Q 023814 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN---GGQ-----PGKHLIQGIGAG--- 231 (276)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~---~~~-----~~~~~~~gi~~~--- 231 (276)
+++||++|. ||+||+|+|+||+++|++.++|+ +.++||||||++++++. .+. ...+.++|++..
T Consensus 171 ig~EI~e~~---pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p~ 245 (349)
T PRK08813 171 VGIELAAHA---PDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVKVKIPG 245 (349)
T ss_pred HHHHHHcCC---CCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchHHHHHcCCCcccCCCCceecccccCCcc
Confidence 999999874 79999999999999999999996 56999999999987642 122 124567777753
Q ss_pred CCcccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 232 VIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 232 ~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
..++.+..+++|+++.|+|+|+.+++++|++++|+++|||||++|
T Consensus 246 ~~~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~aga~al 290 (349)
T PRK08813 246 FLTRRLCSSLLDDVVIVREAELRETLVRLALEEHVIAEGAGALAL 290 (349)
T ss_pred hhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEEEcHHHHH
Confidence 244556678899999999999999999999999999999999874
No 32
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-57 Score=405.98 Aligned_cols=264 Identities=18% Similarity=0.209 Sum_probs=230.4
Q ss_pred ccchhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 023814 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (276)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a 83 (276)
....++++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++..+.+++... ..||++|+||||+|
T Consensus 8 i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~---~~vv~aSsGN~g~a 84 (322)
T PRK06110 8 LEAAAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRV---RGVISATRGNHGQS 84 (322)
T ss_pred HHHHHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCC---ceEEEECCCHHHHH
Confidence 345678899999999999999999888889999999999999999999999999998776433 34999999999999
Q ss_pred HHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhch
Q 023814 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (276)
Q Consensus 84 ~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (276)
+|++|+++|++|+||||+++++.|+++|+.+||+|+.++ .+++++.+.+.++++++ ++||+++| ||.++ .||.|+
T Consensus 85 lA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~--~~~~~~~~~a~~~~~~~-~~~~~~~~-~~~~~-~G~~t~ 159 (322)
T PRK06110 85 VAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHG--EDFQAAREEAARLAAER-GLHMVPSF-HPDLV-RGVATY 159 (322)
T ss_pred HHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEEC--CCHHHHHHHHHHHHHhc-CCEEcCCC-CChHH-hccchH
Confidence 999999999999999999999999999999999999997 36889999999998886 78999998 67777 499999
Q ss_pred HHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCCCC-
Q 023814 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI- 233 (276)
Q Consensus 164 ~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~~- 233 (276)
++||++|++ ++|+||+|+|+||+++|++.++++.+|++|||+|||++++++. .++. ..+..++++....
T Consensus 160 ~~Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~ 238 (322)
T PRK06110 160 ALELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPD 238 (322)
T ss_pred HHHHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCcc
Confidence 999999995 6999999999999999999999999999999999999987653 3332 2344556654321
Q ss_pred c--ccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 234 P--PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 234 ~--~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
+ +.+..+++|+++.|+|+|+++++++|++++|+++||+|+++|
T Consensus 239 ~~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~ssaa~l 283 (322)
T PRK06110 239 PEALEVIRAGADRIVRVTDDEVAAAMRAYFTDTHNVAEGAGAAAL 283 (322)
T ss_pred HHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEehHHHHHH
Confidence 2 223457899999999999999999999999999999999864
No 33
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-57 Score=404.15 Aligned_cols=265 Identities=23% Similarity=0.276 Sum_probs=230.7
Q ss_pred cccchhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 023814 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (276)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~ 82 (276)
+....++++.+.+++|||++++++++..|.+||+|+|++|||||||||++.+++..+.+... ..+||++|+||||+
T Consensus 6 ~i~~a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~g~ 81 (317)
T PRK06815 6 AILEAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQR----QQGVITASSGNHGQ 81 (317)
T ss_pred HHHHHHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhc----CceEEEECCChHHH
Confidence 45567889999999999999999988888999999999999999999999999987643322 23499999999999
Q ss_pred HHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhc
Q 023814 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (276)
Q Consensus 83 a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (276)
|+|++|+++|++|+||||+++++.|++.|+.+||+|+.++. +++++.+.+++++++. +.+|++||+||.++ .||+|
T Consensus 82 alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~-~g~~t 157 (317)
T PRK06815 82 GVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGG--DALNAELAARRAAEQQ-GKVYISPYNDPQVI-AGQGT 157 (317)
T ss_pred HHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEecCCCChhhh-cchhH
Confidence 99999999999999999999999999999999999999985 4788888899988876 78899999999888 49999
Q ss_pred hHHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCCCC
Q 023814 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI 233 (276)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~~ 233 (276)
+++||++|++ .||+||+|+|+||+++|++.+|++++|+++||||||++++++. .+++ ..+.+++++.+..
T Consensus 158 ~a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~ 236 (317)
T PRK06815 158 IGMELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVE 236 (317)
T ss_pred HHHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCc
Confidence 9999999995 6999999999999999999999999999999999999998654 2222 2235566643322
Q ss_pred ----cccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 234 ----PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 234 ----~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
++.+..+++|+++.|+|+|+++++++|++++||++|||||+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~vepssg~al 283 (317)
T PRK06815 237 PGAITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVAL 283 (317)
T ss_pred ccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEecHHHHHH
Confidence 2334567899999999999999999999999999999998764
No 34
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=2.9e-57 Score=422.22 Aligned_cols=261 Identities=26% Similarity=0.337 Sum_probs=231.7
Q ss_pred hHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 023814 8 KKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (276)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~ 87 (276)
..++...+.+|||+++++|++.+|.+||+|+|++|||||||+|+|.+++..+.++.. ..+||++|+||||+++|++
T Consensus 8 ~~~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~a 83 (499)
T TIGR01124 8 TARVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFS 83 (499)
T ss_pred HhHhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHH
Confidence 457888999999999999999889999999999999999999999999988743322 2459999999999999999
Q ss_pred HHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHHH
Q 023814 88 AASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEI 167 (276)
Q Consensus 88 a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 167 (276)
|+++|++|+||||+++|..|++.++.+||+|+.++. +++++.+.+.+++++. +++|++||+||.++ +||+|+|+||
T Consensus 84 a~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~--~~d~a~~~a~~la~~~-g~~~i~p~~~~~~i-~G~gtig~EI 159 (499)
T TIGR01124 84 AARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGA--NFDDAKAKAIELSQEK-GLTFIHPFDDPLVI-AGQGTLALEI 159 (499)
T ss_pred HHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCc--CHHHHHHHHHHHHHhc-CCEeeCCCCChHHH-HhhHHHHHHH
Confidence 999999999999999999999999999999999974 6899999999999886 78999999999998 5999999999
Q ss_pred HhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCCC---Ccc
Q 023814 168 WNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV---IPP 235 (276)
Q Consensus 168 ~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~---~~~ 235 (276)
++|++..+|+||+|+|+||+++|++.++|..+|++|||||||++++++. .+++ ..+.++|+++.. .++
T Consensus 160 ~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~ 239 (499)
T TIGR01124 160 LRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETF 239 (499)
T ss_pred HHhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHH
Confidence 9999767999999999999999999999999999999999999998653 2332 234557776543 245
Q ss_pred cccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 236 VLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 236 ~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
.+.++++|+++.|+|+|+.++++.|++++|+++|||||+++
T Consensus 240 ~~~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~EpagA~~l 280 (499)
T TIGR01124 240 RLCQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAEPAGALAL 280 (499)
T ss_pred HHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEEechHHHHH
Confidence 56678999999999999999999999999999999998764
No 35
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=3.2e-57 Score=412.74 Aligned_cols=250 Identities=24% Similarity=0.335 Sum_probs=224.3
Q ss_pred CcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEE
Q 023814 18 TPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLII 97 (276)
Q Consensus 18 TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~i 97 (276)
|||+++++|++..|.+||+|+|++|||||||||++.+++..+.++++ ..+||++|+||||+++|++|+++|++|+|
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~i 76 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQR----QRGVVAASAGNHAQGVAYAAKKFGIKAVI 76 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhcc----CCEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 89999999998889999999999999999999999999999988875 33599999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHHHHhhhCCCcCE
Q 023814 98 IMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDA 177 (276)
Q Consensus 98 vvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~ 177 (276)
|||+++++.|+++++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.++ .||+|+++||++|++ .||+
T Consensus 77 v~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~a~~~a~~~~~~~-~~~~~~~~~~~~~~-~g~~t~~~Ei~~q~~-~~D~ 151 (380)
T TIGR01127 77 VMPESAPPSKVKATKSYGAEVILHGD--DYDEAYAFATSLAEEE-GRVFVHPFDDEFVM-AGQGTIGLEIMEDIP-DVDT 151 (380)
T ss_pred EEcCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCChhhh-hhhHHHHHHHHHhCC-CCCE
Confidence 99999999999999999999999974 6899999999998886 78999999999988 599999999999995 7999
Q ss_pred EEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCCC---CcccccccccCeE
Q 023814 178 FIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV---IPPVLDVAMLDEV 245 (276)
Q Consensus 178 vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~---~~~~~~~~~~d~~ 245 (276)
||+|+|+||+++|++.++|+.+|++|||||||++++++. .+++ ..+.++|++.+. .++.+..+++|++
T Consensus 152 vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~ 231 (380)
T TIGR01127 152 VIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDV 231 (380)
T ss_pred EEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEE
Confidence 999999999999999999999999999999999997653 3332 234566776432 2344566889999
Q ss_pred EEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 246 ITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 246 ~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
+.|+|+|+.+++++|++++|+++|||||+++
T Consensus 232 v~V~d~e~~~a~~~l~~~~gi~~e~s~a~~l 262 (380)
T TIGR01127 232 VTVDEEEIANAIYLLLERHKILAEGAGAAGV 262 (380)
T ss_pred EEECHHHHHHHHHHHHHhcCeEechHHHHHH
Confidence 9999999999999999999999999998764
No 36
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-57 Score=393.61 Aligned_cols=262 Identities=21% Similarity=0.261 Sum_probs=237.9
Q ss_pred hhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 023814 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (276)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~ 86 (276)
.+.+++..+-.|||.+.-.|++.+|.++|+|+|++||+||||.||+.+++.++-++++ ..+|+++|.||||.++|+
T Consensus 56 ~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~----~~gViasSaGNha~a~Ay 131 (457)
T KOG1250|consen 56 AHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQK----KAGVIASSAGNHAQAAAY 131 (457)
T ss_pred hhhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhh----cCceEEecCccHHHHHHH
Confidence 5567888999999999988999999999999999999999999999999988776664 456999999999999999
Q ss_pred HHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHH
Q 023814 87 IAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPE 166 (276)
Q Consensus 87 ~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (276)
+|+++|+|++||||..+|..|++.++.+||+|+..+ .+|+++..+|.++++++ ++.|++|||+|+.| +|++|++.|
T Consensus 132 aa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G--~~~deAk~~a~~lAke~-gl~yI~pfDhP~I~-aGqgTig~E 207 (457)
T KOG1250|consen 132 AARKLGIPATIVMPVATPLMKIQRCRNLGATVILSG--EDWDEAKAFAKRLAKEN-GLTYIPPFDHPDIW-AGQGTIGLE 207 (457)
T ss_pred HHHhcCCceEEEecCCChHHHHHHHhccCCEEEEec--ccHHHHHHHHHHHHHhc-CceecCCCCCchhh-cCcchHHHH
Confidence 999999999999999999999999999999999998 46999999999999998 89999999999998 599999999
Q ss_pred HHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCCC---Cc
Q 023814 167 IWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV---IP 234 (276)
Q Consensus 167 i~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~---~~ 234 (276)
|.+|+...+++|+||||+||+++||+.|+|+..|+++|||||+.+|.++. .+++ ..+.++|++... ..
T Consensus 208 Il~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~t 287 (457)
T KOG1250|consen 208 ILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENT 287 (457)
T ss_pred HHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhhHHH
Confidence 99999765669999999999999999999999999999999999998764 3443 345667888654 34
Q ss_pred ccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 235 PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 235 ~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
+.+.+.++|.++.|+|+|+.+++.+|.++|..++||++|+||
T Consensus 288 f~~a~~~~d~vvvV~~~ei~aaI~~l~edek~vvEpAgaaaL 329 (457)
T KOG1250|consen 288 FELAQKLVDRVVVVEDDEIAAAILRLFEDEKMVVEPAGAAAL 329 (457)
T ss_pred HHHHHhcCceEEEeccHHHHHHHHHHHHhhhheeccchHHHH
Confidence 556788999999999999999999999999999999999875
No 37
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=5.8e-57 Score=403.28 Aligned_cols=264 Identities=17% Similarity=0.171 Sum_probs=229.5
Q ss_pred cccchhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 023814 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (276)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~ 82 (276)
++...++++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++.++.++|.+. ++||++|+||||+
T Consensus 9 ~i~~A~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~---~~vv~~SsGN~g~ 85 (338)
T PRK06608 9 NIAAAHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP---DKIVAYSTGNHGQ 85 (338)
T ss_pred HHHHHHHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC---CeEEEECCCHHHH
Confidence 3455778899999999999999999888999999999999999999999999999999988642 3499999999999
Q ss_pred HHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhc
Q 023814 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (276)
Q Consensus 83 a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (276)
++|++|+++|++|++|||+++++.|+++++.+||+|+.++. .+++.+.+.+ +++ +++||++||+|+.+++ ||+|
T Consensus 86 alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a~~-~~~-~~~~~~~~~~~~~~~~-g~~t 159 (338)
T PRK06608 86 AVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKAKE-DEE-QGFYYIHPSDSDSTIA-GAGT 159 (338)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHHHH-HHh-CCCEEcCCCCCHHHhc-cHHH
Confidence 99999999999999999999999999999999999999973 3677777777 544 4789999999999984 9999
Q ss_pred hHHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC------cccccccCCCCC
Q 023814 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP------GKHLIQGIGAGV 232 (276)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~----~~~~------~~~~~~gi~~~~ 232 (276)
+++||++|++.+||+||+|+|+||+++|++.++|+.+++++||||||++++++. .++. ..+..++++.+.
T Consensus 160 ~a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~ 239 (338)
T PRK06608 160 LCYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLS 239 (338)
T ss_pred HHHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCC
Confidence 999999999767999999999999999999999999999999999999997532 3322 234567777643
Q ss_pred Cc---ccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 233 IP---PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 233 ~~---~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
.. +.+. +.+|+++.|+|+|+++++++|++++|+++|||||+++
T Consensus 240 ~~~~~~~~~-~~~d~~v~Vsd~e~~~a~~~l~~~~gi~vepssaa~l 285 (338)
T PRK06608 240 VSARTFEYL-KKLDDFYLVEEYEIYYWTAWLTHLLKVICEPSSAINM 285 (338)
T ss_pred CCHHHHHHH-HhCCCEEEECHHHHHHHHHHHHHHcCcEEchHHHHHH
Confidence 22 2222 3479999999999999999999999999999999874
No 38
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=8.3e-57 Score=412.25 Aligned_cols=259 Identities=21% Similarity=0.248 Sum_probs=224.5
Q ss_pred cCCCcceecccccCCCC--------ceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHcCCCCCCC-----------
Q 023814 15 IGHTPMVYLNNVVDGCV--------ARIAAKLEMMQP-CSSVKDRIAYSMIKD-----AEDKGLITPGK----------- 69 (276)
Q Consensus 15 ~~~TPl~~~~~l~~~~g--------~~v~~K~E~~~p-tGS~K~R~a~~~~~~-----a~~~g~~~~~~----------- 69 (276)
+++|||++++.+++.+| .+||+|+|++|| |||||+|++.+++.. +++.|.+.|+.
T Consensus 73 ~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~ 152 (441)
T PRK02991 73 IIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFR 152 (441)
T ss_pred ccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhh
Confidence 89999999999887654 699999999999 999999999999875 45778766653
Q ss_pred -----eEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCc
Q 023814 70 -----TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNG 144 (276)
Q Consensus 70 -----~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 144 (276)
.+||++|+||||+|+|++|+.+|++|+||||+++++.|+++|+.|||+|+.++. +|+++.+.+++++++.++.
T Consensus 153 ~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~--~~~~a~~~A~~la~~~~~~ 230 (441)
T PRK02991 153 QFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEG--DYGVAVEEGRKAAESDPNC 230 (441)
T ss_pred hhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhcCCe
Confidence 359999999999999999999999999999999999999999999999999984 6899999999998876567
Q ss_pred cccCCCCCCcchHhhhhchHHHHHhhhCC--------CcCEEEEecCCCcchHHHHHHHHhh-CCCcEEEEEecCCCccc
Q 023814 145 YILGQFENPANPEIHYETTGPEIWNDSGG--------KVDAFIAGIGTGGTVTGAGRFLKEK-NPNIKVYGIEPSESAVL 215 (276)
Q Consensus 145 ~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~--------~~d~vvvpvG~Gg~~~Gi~~~~~~~-~~~~~vigVe~~~~~~~ 215 (276)
+|+++++++.++ +||+|+++||++|+++ .||+||+|+|+||+++|++.+||++ .|+++||+|||++++++
T Consensus 231 ~~~~~~~~~~~i-aG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~ 309 (441)
T PRK02991 231 YFIDDENSRTLF-LGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCM 309 (441)
T ss_pred EeCCCCCchhHH-HhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHH
Confidence 889998777776 6999999999999963 2679999999999999999999997 68899999999998754
Q ss_pred c----CCCC-----------cccccccCCCCCC---cccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 216 N----GGQP-----------GKHLIQGIGAGVI---PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 216 ~----~~~~-----------~~~~~~gi~~~~~---~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
. .++. ..+.++|++.+.. ++.+.++++|+++.|+|+|+.+++++|++++|+++|||||++|
T Consensus 310 ~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~~~~vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS~Aaal 388 (441)
T PRK02991 310 LLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGVYTVSDETLYRLLGLLADTEGIRLEPSALAGM 388 (441)
T ss_pred HHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceeeHHHHHHH
Confidence 2 2321 2356677776532 3444567899999999999999999999999999999999874
No 39
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=3.1e-56 Score=406.99 Aligned_cols=260 Identities=20% Similarity=0.238 Sum_probs=225.0
Q ss_pred ccCCCcceecccccCCC--------CceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHcCCCCCCC----------
Q 023814 14 LIGHTPMVYLNNVVDGC--------VARIAAKLEMMQP-CSSVKDRIAYSMIKD-----AEDKGLITPGK---------- 69 (276)
Q Consensus 14 ~~~~TPl~~~~~l~~~~--------g~~v~~K~E~~~p-tGS~K~R~a~~~~~~-----a~~~g~~~~~~---------- 69 (276)
++++|||++++++++.+ +.+||+|+|++|| |||||||++.+++.. +++.|.+.++.
T Consensus 67 ~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~ 146 (431)
T TIGR02035 67 GIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKF 146 (431)
T ss_pred CccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhh
Confidence 89999999999988743 5799999999999 999999999999864 67888877764
Q ss_pred ------eEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCC
Q 023814 70 ------TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN 143 (276)
Q Consensus 70 ------~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~ 143 (276)
.+||++|+||||+|+|++|+.+|++|+||||+++++.|++.|+.|||+|+.++. +|+++.+.+++++++.++
T Consensus 147 ~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~--~~~~a~~~A~~la~~~~~ 224 (431)
T TIGR02035 147 KDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYES--DYGVAVEEGRKNADADPM 224 (431)
T ss_pred hhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCC
Confidence 369999999999999999999999999999999999999999999999999985 689999999999988756
Q ss_pred ccccCCCCCCcchHhhhhchHHHHHhhhCC--------CcCEEEEecCCCcchHHHHHHHHhh-CCCcEEEEEecCCCcc
Q 023814 144 GYILGQFENPANPEIHYETTGPEIWNDSGG--------KVDAFIAGIGTGGTVTGAGRFLKEK-NPNIKVYGIEPSESAV 214 (276)
Q Consensus 144 ~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~--------~~d~vvvpvG~Gg~~~Gi~~~~~~~-~~~~~vigVe~~~~~~ 214 (276)
.||+++. |+.++.+||+|+++||++|+++ .||+|++|+|+||+++|+++++|++ +|++|||+|||+++++
T Consensus 225 ~~~~d~~-n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~ 303 (431)
T TIGR02035 225 CYFVDDE-NSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPC 303 (431)
T ss_pred eEECCCC-CcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHH
Confidence 7777774 5566668999999999999953 4779999999999999999999997 7899999999999975
Q ss_pred cc----CCC-----------CcccccccCCCCCCc---ccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 215 LN----GGQ-----------PGKHLIQGIGAGVIP---PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 215 ~~----~~~-----------~~~~~~~gi~~~~~~---~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
+. .++ ...+.++||+++..+ +.+.++++|+++.|+|+|+.+++++|++++||++|||||+++
T Consensus 304 ~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~~~~vd~vv~VsD~ei~~a~~~L~~~egi~vEpSsaa~l 383 (431)
T TIGR02035 304 MLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLMEPLLSGIYTVDDYTLYDLLRILAESEGKRLEPSALAGM 383 (431)
T ss_pred HHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeEcHHHHHHH
Confidence 42 222 124677888876432 223456899999999999999999999999999999998764
No 40
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=1.2e-56 Score=397.87 Aligned_cols=266 Identities=25% Similarity=0.344 Sum_probs=234.2
Q ss_pred ccccchhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHH
Q 023814 2 EDKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTG 81 (276)
Q Consensus 2 ~~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g 81 (276)
+++++.++.|.+.+++|||+++++|+..+|.+||+|+|++|||||||||++.+++.++++.+. ..+||++|+||||
T Consensus 2 ~~~~~~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~----~~~iv~~ssGN~g 77 (304)
T cd01562 2 EDILAAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER----AKGVVAASAGNHA 77 (304)
T ss_pred hHHHHHHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc----CCcEEEECCCHHH
Confidence 456778899999999999999999988888999999999999999999999999999887762 2349999999999
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhh
Q 023814 82 IGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYE 161 (276)
Q Consensus 82 ~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (276)
+|+|++|+++|++|++|||++.++.|+++|+.+||+|+.+++ +++++++.+++++++. +++|++||+|+.+++ ||.
T Consensus 78 ~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~--~~~~~~~~a~~la~~~-~~~~~~~~~n~~~~~-g~~ 153 (304)
T cd01562 78 QGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGE--DFDEAEAKARELAEEE-GLTFIHPFDDPDVIA-GQG 153 (304)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcchhc-cHH
Confidence 999999999999999999999999999999999999999995 4889999999999886 789999999999884 999
Q ss_pred chHHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCCC
Q 023814 162 TTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV 232 (276)
Q Consensus 162 t~~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~ 232 (276)
++++||++|++ .||+||+|+||||+++|++++||+.++.+|||+|||.+++.+. .+.. ..+..++++.+.
T Consensus 154 ~~~~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~ 232 (304)
T cd01562 154 TIGLEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKR 232 (304)
T ss_pred HHHHHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccccCCC
Confidence 99999999996 4999999999999999999999999999999999999987653 2222 133445665432
Q ss_pred ---CcccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 233 ---IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 233 ---~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
.++.+..+++|+++.|+|+|+++++++|+++|||++|||||+++
T Consensus 233 ~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a~ 279 (304)
T cd01562 233 PGELTFEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEPAGALAL 279 (304)
T ss_pred chHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEchhHHHHH
Confidence 12334667899999999999999999999999999999998764
No 41
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=2.4e-56 Score=417.62 Aligned_cols=261 Identities=25% Similarity=0.327 Sum_probs=230.7
Q ss_pred hHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 023814 8 KKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (276)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~ 87 (276)
..++...+.+|||+++++|++.+|.+||+|+|++|||||||+|+|.+++..+.+... ..+||++|+||||+++|++
T Consensus 11 ~~~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gvV~aSaGNha~avA~a 86 (504)
T PRK09224 11 TARVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQL----ARGVITASAGNHAQGVALS 86 (504)
T ss_pred HHHhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhc----CCEEEEECcCHHHHHHHHH
Confidence 357888999999999999999889999999999999999999999999988764322 3459999999999999999
Q ss_pred HHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHHH
Q 023814 88 AASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEI 167 (276)
Q Consensus 88 a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 167 (276)
|+++|++|+||||++++..|++.++.+||+|+.++. +|+++.+.+.+++++. +++|++||+||.++ +||+|+++||
T Consensus 87 a~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~--~~~~a~~~a~~l~~~~-g~~~v~~f~~~~~i-~G~gTi~~EI 162 (504)
T PRK09224 87 AARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGD--SFDEAYAHAIELAEEE-GLTFIHPFDDPDVI-AGQGTIAMEI 162 (504)
T ss_pred HHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcHHH-HhHHHHHHHH
Confidence 999999999999999999999999999999999984 6899999999998886 78999999999998 5999999999
Q ss_pred HhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccCCCCC---Ccc
Q 023814 168 WNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV---IPP 235 (276)
Q Consensus 168 ~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~---~~~ 235 (276)
++|++..||+||+|+|+||+++|++.++|.++|++|||||||++++++. .+++ ..+.++|++.+. .++
T Consensus 163 ~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~ 242 (504)
T PRK09224 163 LQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETF 242 (504)
T ss_pred HHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHH
Confidence 9999655999999999999999999999999999999999999998753 2332 123456666432 234
Q ss_pred cccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 236 VLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 236 ~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
.+.++++|+++.|+|+|+.+++++|++++|+++|||||+++
T Consensus 243 ~~~~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~~epagA~~l 283 (504)
T PRK09224 243 RLCQEYVDDVITVDTDEICAAIKDVFEDTRSIAEPAGALAL 283 (504)
T ss_pred HHHHhcCCeEEEECHHHHHHHHHHHHHhcCeEEcHHHHHHH
Confidence 55678999999999999999999999999999999998764
No 42
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=2.8e-56 Score=395.40 Aligned_cols=259 Identities=24% Similarity=0.323 Sum_probs=224.9
Q ss_pred cccchhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 023814 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (276)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~ 82 (276)
++...+++|...+++|||+++++++.. +.+||+|+|++|||||||||++.+++.++.+ + .++||++|+||||+
T Consensus 9 ~i~~a~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~-----~~~vv~aSsGN~g~ 81 (310)
T PRK08246 9 DVRAAAQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-P-----AAGVVAASGGNAGL 81 (310)
T ss_pred HHHHHHHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-c-----CCeEEEeCCCHHHH
Confidence 445678899999999999999998765 7899999999999999999999999988765 2 23499999999999
Q ss_pred HHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhc
Q 023814 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (276)
Q Consensus 83 a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (276)
|+|++|+++|++|+||||+++++.|+.+++.+||+|+.++. +++++++.+.+++++. +++|++||+||.+++ ||+|
T Consensus 82 a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~i~-g~~t 157 (310)
T PRK08246 82 AVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EYADALEAAQAFAAET-GALLCHAYDQPEVLA-GAGT 157 (310)
T ss_pred HHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeCCCCCChhhhc-chHH
Confidence 99999999999999999999999999999999999999985 5788999999988876 889999999999985 9999
Q ss_pred hHHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCccc-----ccccCCCCCC
Q 023814 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQPGKH-----LIQGIGAGVI 233 (276)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~----~~~~~~~-----~~~gi~~~~~ 233 (276)
+++||++|+ +.||+||+|+|+||+++|++.+|+. .+|||+|||++++++. .++.... ..++++.+..
T Consensus 158 ~~~Ei~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~ 233 (310)
T PRK08246 158 LGLEIEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRV 233 (310)
T ss_pred HHHHHHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCCCCCceeccccCCCc
Confidence 999999999 4799999999999999999999964 4899999999998654 3443222 2234444432
Q ss_pred ---cccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 234 ---PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 234 ---~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
++.+.++++|+++.|+|+|+++++++|++++|+++|||||+++
T Consensus 234 ~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~e~s~aa~l 279 (310)
T PRK08246 234 GEIAFALARAHVVTSVLVSDEAIIAARRALWEELRLAVEPGAATAL 279 (310)
T ss_pred cHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceeehHHHHHH
Confidence 3446677899999999999999999999999999999999864
No 43
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=2.8e-56 Score=401.32 Aligned_cols=258 Identities=22% Similarity=0.289 Sum_probs=220.4
Q ss_pred HHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 023814 9 KDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (276)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a 88 (276)
+++++.+|+|||+++++++..+|.+||+|+|++|||||||||++.+++.++.++|. + +||++|+||||+|+|++|
T Consensus 20 ~~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~----~-~vV~aSsGN~G~AlA~~a 94 (351)
T PRK06352 20 PMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGA----E-AVICASTGNTSAAAAAYA 94 (351)
T ss_pred CccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCCC----C-EEEEECCcHHHHHHHHHH
Confidence 35788999999999999988788899999999999999999999999999999885 3 499999999999999999
Q ss_pred HHcCCcEEEEecCC-CCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHHH
Q 023814 89 ASRGYKLIIIMPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEI 167 (276)
Q Consensus 89 ~~~g~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 167 (276)
+.+|++|+||||++ .++.|+.+|+.+||+|+.++. +++++.+.+++++++. +.++++ +.||.+++ ||.|+++||
T Consensus 95 a~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~~~-G~~t~~~EI 169 (351)
T PRK06352 95 TRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQG--NFDEALKSVRELAETE-AVTLVN-SVNPYRLE-GQKTAAFEI 169 (351)
T ss_pred HHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-Cccccc-CCCcccee-eHHHHHHHH
Confidence 99999999999997 589999999999999999985 5888999999998875 556655 45999985 999999999
Q ss_pred HhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCC-----cEEEEEecCCCccccCCCCc---ccccccCCCCC-Cccccc
Q 023814 168 WNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPN-----IKVYGIEPSESAVLNGGQPG---KHLIQGIGAGV-IPPVLD 238 (276)
Q Consensus 168 ~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~-----~~vigVe~~~~~~~~~~~~~---~~~~~gi~~~~-~~~~~~ 238 (276)
++|++..||+||+|+|+||+++|++++||+++|+ ++||+|||++++++..+++. .+..+++..+. ..+...
T Consensus 170 ~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~~~~~~~~ia~~l~~~~~~~~~~~ 249 (351)
T PRK06352 170 CEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGKPIDNPETIATAIRIGNPASWGLA 249 (351)
T ss_pred HHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCCCcCCCCcceeEEEeCCCCcHHHH
Confidence 9999767999999999999999999999998877 89999999999766555432 22334444332 112222
Q ss_pred ccccC----eEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 239 VAMLD----EVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 239 ~~~~d----~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
...+| .++.|+|+|+++++++|++++||++||+||+++
T Consensus 250 ~~~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~vepssaaal 291 (351)
T PRK06352 250 EAARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIEPGSAASL 291 (351)
T ss_pred HHHHHHhCCEEEEECHHHHHHHHHHHHhhcCceEchhHHHHH
Confidence 22333 589999999999999999999999999999874
No 44
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=2.4e-55 Score=401.32 Aligned_cols=258 Identities=23% Similarity=0.215 Sum_probs=223.6
Q ss_pred HHhcccCCCcceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 023814 10 DVTELIGHTPMVYLNNVVDGCV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (276)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g-~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a 88 (276)
.+++++|+|||++++++++.+| .+||+|+|++|||||||||++.+++.++.++|. .+||++|+||||+|+|++|
T Consensus 72 ~vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~a 146 (394)
T PRK08197 72 IVSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGV-----KHLAMPTNGNAGAAWAAYA 146 (394)
T ss_pred CCccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHH
Confidence 4788999999999999988887 599999999999999999999999999999885 3499999999999999999
Q ss_pred HHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHHHH
Q 023814 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIW 168 (276)
Q Consensus 89 ~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 168 (276)
+++|++|+||||+++++.|+++|+.+||+|+.+++ +++++.+.+++.+++. ++++++++.||.+++ |++|+++||+
T Consensus 147 a~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~~~~~~~~np~~ie-G~~t~a~Ei~ 222 (394)
T PRK08197 147 ARAGIRATIFMPADAPEITRLECALAGAELYLVDG--LISDAGKIVAEAVAEY-GWFDVSTLKEPYRIE-GKKTMGLELA 222 (394)
T ss_pred HHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CcccccCCCCccchh-cHHHHHHHHH
Confidence 99999999999999999999999999999999985 5788888999988876 789999999999995 9999999999
Q ss_pred hhhCCC-cCEEEEecCCCcchHHHHHHHHhh-------CCCcEEEEEecCCCcccc----CCCC-------cccccccCC
Q 023814 169 NDSGGK-VDAFIAGIGTGGTVTGAGRFLKEK-------NPNIKVYGIEPSESAVLN----GGQP-------GKHLIQGIG 229 (276)
Q Consensus 169 ~q~~~~-~d~vvvpvG~Gg~~~Gi~~~~~~~-------~~~~~vigVe~~~~~~~~----~~~~-------~~~~~~gi~ 229 (276)
+|++++ ||+||+|+|+||+++|++++|+++ .+.+|||+|||++++++. .+.. ..+..+++.
T Consensus 223 eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~ 302 (394)
T PRK08197 223 EQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIR 302 (394)
T ss_pred HHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhh
Confidence 999754 999999999999999999999997 388999999999997653 2221 123344554
Q ss_pred CCCCcc--c---ccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 230 AGVIPP--V---LDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 230 ~~~~~~--~---~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
.+.... . ..+++.+.++.|+|+|+++++++|+++|||++|||||+++
T Consensus 303 ~~~~~~~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaal 354 (394)
T PRK08197 303 VPKALGDFLVLDAVRETGGCAIAVSDDAILAAQRELAREEGLFACPEGAATF 354 (394)
T ss_pred CCCCCCHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceECchHHHHH
Confidence 332111 1 1235677899999999999999999999999999999874
No 45
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=9.3e-55 Score=391.78 Aligned_cols=259 Identities=25% Similarity=0.303 Sum_probs=220.9
Q ss_pred hhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 023814 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (276)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~ 86 (276)
...++++.+++|||++++++++.+|.+||+|+|++|||||||||++.+++.+++++|. .+||++|+||||+|+|+
T Consensus 18 ~~~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~alA~ 92 (352)
T PRK06721 18 NTPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGS-----EAIICASTGNTSASAAA 92 (352)
T ss_pred CCCccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHH
Confidence 3446788899999999999988888899999999999999999999999999999885 34999999999999999
Q ss_pred HHHHcCCcEEEEecCCC-CHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHH
Q 023814 87 IAASRGYKLIIIMPSTY-SIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGP 165 (276)
Q Consensus 87 ~a~~~g~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 165 (276)
+|+++|++|+||||++. ++.|+++|+.+||+|+.+++ +++++.+.+++++++. ++++.+ +.||.+++ ||.|+++
T Consensus 93 ~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~~~-G~~t~~~ 167 (352)
T PRK06721 93 YAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--NFDDALKAVRNIAAEE-PITLVN-SVNPYRIE-GQKTAAF 167 (352)
T ss_pred HHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhC-Cceecc-CCCchhhh-hhhhHHH
Confidence 99999999999999975 88999999999999999984 5888889999998876 566665 56888885 9999999
Q ss_pred HHHhhhCCCcCEEEEecCCCcchHHHHH----HHHhhC-CCcEEEEEecCCCccccCCCC---cccccccCCCCCCccc-
Q 023814 166 EIWNDSGGKVDAFIAGIGTGGTVTGAGR----FLKEKN-PNIKVYGIEPSESAVLNGGQP---GKHLIQGIGAGVIPPV- 236 (276)
Q Consensus 166 Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~----~~~~~~-~~~~vigVe~~~~~~~~~~~~---~~~~~~gi~~~~~~~~- 236 (276)
||++|+++.||+||+|+|+||+++|++. ++|+.+ |+++||+|||++++++..+.. ..+..++++.+. |..
T Consensus 168 Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g~~~~~~~tia~~l~~~~-~~~~ 246 (352)
T PRK06721 168 EICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKGHVIDEPETIATAIRIGN-PASW 246 (352)
T ss_pred HHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhCCcCCCCCceeeccccCC-CCCH
Confidence 9999997679999999999999998554 445554 889999999999987765443 233455665542 211
Q ss_pred -----ccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 237 -----LDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 237 -----~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
....++|+++.|+|+|+++++++|+++|||++|||||++|
T Consensus 247 ~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~eGi~vepssgaal 291 (352)
T PRK06721 247 SYAVEAAEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEPGSNASL 291 (352)
T ss_pred HHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCcccCchHHHHH
Confidence 1245789999999999999999999999999999999864
No 46
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=4.7e-55 Score=401.62 Aligned_cols=259 Identities=19% Similarity=0.244 Sum_probs=224.9
Q ss_pred HHhcccCCCcceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 023814 10 DVTELIGHTPMVYLNNVVDGCV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (276)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g-~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a 88 (276)
++++.+|+|||+++++|++.+| .+||+|+|++|||||||||++.+++..|.+.|. + +|+++|+||||+|+|++|
T Consensus 82 ~v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~----~-~vv~aSsGN~g~alA~~a 156 (421)
T PRK07591 82 PVDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGF----T-TVACASTGNLANSVAAHA 156 (421)
T ss_pred CCcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCC----C-EEEEeCCCHHHHHHHHHH
Confidence 4788999999999999998888 599999999999999999999999999999985 3 499999999999999999
Q ss_pred HHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHHHH
Q 023814 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIW 168 (276)
Q Consensus 89 ~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 168 (276)
+++|++|+||||+++++.|+.+++.+||+|+.+++ +|+++.+.+++++++.++++|++++.||..++ ||+|+++||+
T Consensus 157 a~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g--~~d~a~~~a~~~~~~~~~~~~~n~~~~p~~ie-G~~Tia~Ei~ 233 (421)
T PRK07591 157 ARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDG--NYDDVNRLCSELANEHEGWGFVNINLRPYYAE-GSKTLGYEVA 233 (421)
T ss_pred HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCCEEEecCCCCccccc-chHHHHHHHH
Confidence 99999999999999999999999999999999995 58899999999988765788888888999885 9999999999
Q ss_pred hhhCCC-cCEEEEecCCCcchHHHHHHHHhh-------CCCcEEEEEecCCCcccc----CCCC------cccccccCCC
Q 023814 169 NDSGGK-VDAFIAGIGTGGTVTGAGRFLKEK-------NPNIKVYGIEPSESAVLN----GGQP------GKHLIQGIGA 230 (276)
Q Consensus 169 ~q~~~~-~d~vvvpvG~Gg~~~Gi~~~~~~~-------~~~~~vigVe~~~~~~~~----~~~~------~~~~~~gi~~ 230 (276)
+|++++ ||+||+|+|+||+++|++++|+++ .+.+|||+|||++++++. .+.. ..+..+++..
T Consensus 234 eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~ 313 (421)
T PRK07591 234 EQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAI 313 (421)
T ss_pred HHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhheec
Confidence 999755 999999999999999999999998 578999999999986653 2221 2234455543
Q ss_pred CCC-----cccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 231 GVI-----PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 231 ~~~-----~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
+.. .....+++.+.++.|+|+|+++++++|++++||++||+||+++
T Consensus 314 ~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~epssaaal 364 (421)
T PRK07591 314 GNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLARTEGIFTETAGGVTV 364 (421)
T ss_pred CCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCeeecchHHHHH
Confidence 321 1122345678999999999999999999999999999998864
No 47
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=1e-54 Score=388.66 Aligned_cols=258 Identities=24% Similarity=0.270 Sum_probs=224.8
Q ss_pred HHHhcccCCCcceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 023814 9 KDVTELIGHTPMVYLNNVVDGCV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (276)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g-~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~ 87 (276)
+++.+.+++|||+++++|+...| .+||+|+|++|||||||||++.+++.++.++|. . +||++|+||||+|+|++
T Consensus 14 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~----~-~vv~~SsGN~g~alA~~ 88 (324)
T cd01563 14 DIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGV----K-AVACASTGNTSASLAAY 88 (324)
T ss_pred CcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCC----C-EEEEeCCCHHHHHHHHH
Confidence 56899999999999999988766 799999999999999999999999999999884 4 49999999999999999
Q ss_pred HHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHHH
Q 023814 88 AASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEI 167 (276)
Q Consensus 88 a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 167 (276)
|+.+|++|++|||+++++.|+++|+.+||+|+.++. +++++.+.+++++++. ++|++||+|+.+++ ||.+++.||
T Consensus 89 a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~--~~~~~~~~n~~~~~-g~~t~~~Ei 163 (324)
T cd01563 89 AARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--NFDDALRLVRELAEEN--WIYLSNSLNPYRLE-GQKTIAFEI 163 (324)
T ss_pred HHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--cHHHHHHHHHHHHHhc--CeeccCCCCcceec-chhhhHHHH
Confidence 999999999999999999999999999999999985 5788899999998875 78899999999985 999999999
Q ss_pred HhhhCC-CcCEEEEecCCCcchHHHHHHHHhhC------CCcEEEEEecCCCcccc----CCCC-------cccccccCC
Q 023814 168 WNDSGG-KVDAFIAGIGTGGTVTGAGRFLKEKN------PNIKVYGIEPSESAVLN----GGQP-------GKHLIQGIG 229 (276)
Q Consensus 168 ~~q~~~-~~d~vvvpvG~Gg~~~Gi~~~~~~~~------~~~~vigVe~~~~~~~~----~~~~-------~~~~~~gi~ 229 (276)
++|+++ .||+||+|+|+||+++|++.+|+... ++++||||||.+++.+. .+.. ..+.+++++
T Consensus 164 ~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~gl~ 243 (324)
T cd01563 164 AEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIR 243 (324)
T ss_pred HHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceeeeee
Confidence 999964 69999999999999999999999875 57999999999986542 2211 234456666
Q ss_pred CCCCc-----ccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 230 AGVIP-----PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 230 ~~~~~-----~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
.+..+ +.+..++.|+++.|+|+|+++++++|++++|+++|||||+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~al 295 (324)
T cd01563 244 IGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFVEPASAASL 295 (324)
T ss_pred cCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCceeCchHHHHH
Confidence 54211 112345678999999999999999999999999999999864
No 48
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=1.4e-54 Score=391.28 Aligned_cols=257 Identities=24% Similarity=0.286 Sum_probs=221.2
Q ss_pred HHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 023814 9 KDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (276)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a 88 (276)
+++++++|+|||++++.|+...|.+||+|+|++|||||||||++.+++..++++|. . +||++|+||||+++|++|
T Consensus 23 ~~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~----~-~iv~aSsGN~g~alA~~a 97 (353)
T PRK07409 23 PVVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGA----K-AVICASTGNTSASAAAYA 97 (353)
T ss_pred CcccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC----C-EEEEECCcHHHHHHHHHH
Confidence 34788999999999999988778899999999999999999999999999998885 3 599999999999999999
Q ss_pred HHcCCcEEEEecCC-CCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHHH
Q 023814 89 ASRGYKLIIIMPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEI 167 (276)
Q Consensus 89 ~~~g~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 167 (276)
+++|++|+||||++ .++.|++.|+.+||+|+.+++ +++++.+.++++++++ +.+++++ .||.+++ ||.|+++||
T Consensus 98 ~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~l~~~~-~~~~~~~-~n~~~~~-g~~t~~~EI 172 (353)
T PRK07409 98 ARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG--NFDDALEIVRELAEKY-PVTLVNS-VNPYRIE-GQKTAAFEI 172 (353)
T ss_pred HHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CceecCC-CCchhhh-hHHHHHHHH
Confidence 99999999999997 589999999999999999985 5889999999988876 4666665 5999885 999999999
Q ss_pred HhhhCCCcCEEEEecCCCcchHHHHHHHHhhCC------CcEEEEEecCCCccccCCCCc---ccccccCCCCCCcccc-
Q 023814 168 WNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNP------NIKVYGIEPSESAVLNGGQPG---KHLIQGIGAGVIPPVL- 237 (276)
Q Consensus 168 ~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~------~~~vigVe~~~~~~~~~~~~~---~~~~~gi~~~~~~~~~- 237 (276)
++|+++.||+||+|+|+||+++|++.+|++..+ .+|||+|||.+++++..+++. .+..++++.+. |..+
T Consensus 173 ~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g~~~~~~~ti~~~l~~~~-~~~~~ 251 (353)
T PRK07409 173 VDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRGEPVKNPETIATAIRIGN-PASWD 251 (353)
T ss_pred HHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhCCcCCCCcceeeeeecCC-CCCHH
Confidence 999976799999999999999999999998743 489999999998776654432 23445555432 2222
Q ss_pred -----cccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 238 -----DVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 238 -----~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
.+++.++++.|+|+|+++++++|++++|+++|||||++|
T Consensus 252 ~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~pssa~al 295 (353)
T PRK07409 252 KAVAARDESGGLIDAVTDEEILEAYRLLARKEGVFCEPASAASV 295 (353)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCceeCchHHHHH
Confidence 234567899999999999999999999999999999874
No 49
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=1.8e-54 Score=386.11 Aligned_cols=256 Identities=21% Similarity=0.278 Sum_probs=217.1
Q ss_pred hcccCCCcceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHH
Q 023814 12 TELIGHTPMVYLNNVVDGCV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAAS 90 (276)
Q Consensus 12 ~~~~~~TPl~~~~~l~~~~g-~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~ 90 (276)
...+++|||+++++|++.+| .+||+|+|++|||||||||++.+++.+++++|. ++||++|+||||+|+|++|+.
T Consensus 10 ~~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~lv~aSsGN~g~alA~~aa~ 84 (319)
T PRK06381 10 EKPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGY-----SGITVGTCGNYGASIAYFARL 84 (319)
T ss_pred cccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHH
Confidence 45689999999999998887 699999999999999999999999999999985 349999999999999999999
Q ss_pred cCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCC-CC-cchHhhhhchHHHHH
Q 023814 91 RGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFE-NP-ANPEIHYETTGPEIW 168 (276)
Q Consensus 91 ~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~-~~~~~g~~t~~~Ei~ 168 (276)
+|++|+||||++++..|+++|+.+||+|+.+++ +++++.+.+++++++. ++|++++++ || .++ .||.|+++||+
T Consensus 85 ~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~-~G~~t~a~Ei~ 160 (319)
T PRK06381 85 YGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDG--KYEEAVERSRKFAKEN-GIYDANPGSVNSVVDI-EAYSAIAYEIY 160 (319)
T ss_pred cCCcEEEEECCCCCHHHHHHHHHcCCEEEEcCC--CHHHHHHHHHHHHHHc-CcEecCCCCCCcchHh-hhHHHHHHHHH
Confidence 999999999999999999999999999999985 4788999999998875 788888886 76 456 59999999999
Q ss_pred hhhCCCcCEEEEecCCCcchHHHHHHHHhh------CCCcEEEEEecCCCcccc----CCCCc------ccccc-cCCCC
Q 023814 169 NDSGGKVDAFIAGIGTGGTVTGAGRFLKEK------NPNIKVYGIEPSESAVLN----GGQPG------KHLIQ-GIGAG 231 (276)
Q Consensus 169 ~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~------~~~~~vigVe~~~~~~~~----~~~~~------~~~~~-gi~~~ 231 (276)
+|++..||+||+|+|+||+++|++++|+++ .|.++||+|||.+++++. .+... .+..+ .++.+
T Consensus 161 ~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~ 240 (319)
T PRK06381 161 EALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEP 240 (319)
T ss_pred HHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCC
Confidence 999767999999999999999999999998 789999999999886542 22111 01111 11111
Q ss_pred CC---------cccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 232 VI---------PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 232 ~~---------~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
.. ...+..++.++++.|+|+|+++++++|+++|||++||+||+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~g~~~~v~d~e~~~a~~~la~~egi~~epssa~al 294 (319)
T PRK06381 241 LVSYRSFDGDNALEAIYDSHGYAFGFSDDEMVKYAELLRRMEGLNALPASASAL 294 (319)
T ss_pred cccccCCCHHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhCCcccCchHHHHH
Confidence 10 0112345677999999999999999999999999999999864
No 50
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=1.8e-54 Score=386.72 Aligned_cols=243 Identities=24% Similarity=0.255 Sum_probs=205.8
Q ss_pred HHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHH
Q 023814 10 DVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAA 89 (276)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~ 89 (276)
.+++++|+|||++.+ +||+|+|++|||||||||++.++++++.++|. ++|+++|+||||.|+|++|+
T Consensus 51 ~vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~-----~~vv~aSsGN~g~slA~~aa 117 (338)
T PRK06450 51 FISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGI-----KQISEDSSGNAGASIAAYGA 117 (338)
T ss_pred CCCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC-----CEEEEECCcHHHHHHHHHHH
Confidence 478899999999864 69999999999999999999999999999874 35999999999999999999
Q ss_pred HcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHHHHh
Q 023814 90 SRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWN 169 (276)
Q Consensus 90 ~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 169 (276)
++|++|+||||+++++.|+.+|+.|||+|+.+++ +++++.+. +++. +.+|++++.||.+++ ||+|+++||++
T Consensus 118 ~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~--~~~~~~~~----a~~~-g~~~~~~~~np~~ie-G~kTia~EI~e 189 (338)
T PRK06450 118 AAGIEVKIFVPETASGGKLKQIESYGAEVVRVRG--SREDVAKA----AENS-GYYYASHVLQPQFRD-GIRTLAYEIAK 189 (338)
T ss_pred HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHH----HHhc-CeEeccCCCCccHHH-HHHHHHHHHHH
Confidence 9999999999999999999999999999999985 46655443 4444 678888999999996 99999999999
Q ss_pred hhCC-CcCEEEEecCCCcchHHHHHHHHhhCC------CcEEEEEecCCCcccc----CCCC-----cccccccCCCCCC
Q 023814 170 DSGG-KVDAFIAGIGTGGTVTGAGRFLKEKNP------NIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI 233 (276)
Q Consensus 170 q~~~-~~d~vvvpvG~Gg~~~Gi~~~~~~~~~------~~~vigVe~~~~~~~~----~~~~-----~~~~~~gi~~~~~ 233 (276)
|+++ .||+||+|+|+||+++|++++|+++.+ .+|||+|||++++++. +... ..+..++|..+.
T Consensus 190 ql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~- 268 (338)
T PRK06450 190 DLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTR- 268 (338)
T ss_pred HcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCC-
Confidence 9974 599999999999999999999999864 3899999999987654 2211 123445554432
Q ss_pred cccc------cccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 234 PPVL------DVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 234 ~~~~------~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
|... .++. ++.+.|+|+|+++++++|++ +||++|||||++|
T Consensus 269 p~~~~~~~~~i~~~-g~~v~V~d~ei~~a~~~La~-~Gi~vepssaaal 315 (338)
T PRK06450 269 PFLLDYMVKALSEY-GECIVVSDNEIVEAWKELAK-KGLLVEYSSATVY 315 (338)
T ss_pred CCCHHHHHHHHHhc-CcEEEECHHHHHHHHHHHHH-cCCEEChhHHHHH
Confidence 3222 2334 79999999999999999987 6999999999874
No 51
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=6.6e-54 Score=385.53 Aligned_cols=248 Identities=23% Similarity=0.249 Sum_probs=217.0
Q ss_pred HhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHH
Q 023814 11 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAAS 90 (276)
Q Consensus 11 i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~ 90 (276)
+++++|.|||+++. .+||+|+|++|||||||||++.+++.++.+.|. .+||++|+||||+|+|++|++
T Consensus 58 ~sl~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~ 125 (347)
T PRK08329 58 PHLTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGI-----NEVVIDSSGNAALSLALYSLS 125 (347)
T ss_pred CcCCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCC-----CEEEEECCCcHHHHHHHHHHH
Confidence 67889999999873 489999999999999999999999999999985 349999999999999999999
Q ss_pred cCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHHHHhh
Q 023814 91 RGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWND 170 (276)
Q Consensus 91 ~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q 170 (276)
+|++|+||||+++++.|+.+++.+||+|+.+++ +++++.+.+.+++++. +.+|++++.||.+++ ||+|+++||++|
T Consensus 126 ~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~--~~~~~~~~a~~l~~~~-~~~~~~~~~np~~~e-G~~t~~~Ei~eq 201 (347)
T PRK08329 126 EGIKVHVFVSYNASKEKISLLSRLGAELHFVEG--DRMEVHEEAVKFSKRN-NIPYVSHWLNPYFLE-GTKTIAYEIYEQ 201 (347)
T ss_pred cCCcEEEEECCCChHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeccCCCCchhhc-cchhHHHHHHHH
Confidence 999999999999999999999999999999985 3677888888888875 678889999999986 999999999999
Q ss_pred hCCCcCEEEEecCCCcchHHHHHHHHhhC------CCcEEEEEecCCCccccC-CCCcccccccCCCCCCcc-----ccc
Q 023814 171 SGGKVDAFIAGIGTGGTVTGAGRFLKEKN------PNIKVYGIEPSESAVLNG-GQPGKHLIQGIGAGVIPP-----VLD 238 (276)
Q Consensus 171 ~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~------~~~~vigVe~~~~~~~~~-~~~~~~~~~gi~~~~~~~-----~~~ 238 (276)
++ .||+||+|+|+||+++|++++|+++. +.+|||+|||++++++.. .....+.+++++.+..+. .+.
T Consensus 202 l~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~~~~~t~a~gi~i~~~~~~~~~~~~l 280 (347)
T PRK08329 202 IG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRSKSENKLADGIAIPEPPRKEEMLRAL 280 (347)
T ss_pred cC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhccCCCCceeeeEEeCCCCCHHHHHHHH
Confidence 96 79999999999999999999999874 568999999999876653 233456777887664332 233
Q ss_pred ccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 239 VAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 239 ~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
+++.+.++.|+|+|+++++++|++ +||++||+||+++
T Consensus 281 ~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~vepssa~a~ 317 (347)
T PRK08329 281 EESNGFCISVGEEETRAALHWLRR-MGFLVEPTSAVAL 317 (347)
T ss_pred HHhCCEEEEECHHHHHHHHHHHHh-cCceECccHHHHH
Confidence 456778999999999999999986 7999999999874
No 52
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=5.6e-54 Score=392.67 Aligned_cols=257 Identities=26% Similarity=0.265 Sum_probs=221.5
Q ss_pred HHHhcccCCCcceecccccCCCCc-eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 023814 9 KDVTELIGHTPMVYLNNVVDGCVA-RIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (276)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~-~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~ 87 (276)
+.+++.+|+|||+++++++..+|. +||+|+|++|||||||||++.+++.+++++|. + +||++|+||||+|+|++
T Consensus 59 ~~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~----~-~vv~aSsGN~g~alA~~ 133 (397)
T PRK06260 59 KIVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGV----K-TVACASTGNTSASLAAY 133 (397)
T ss_pred CcccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCC----C-EEEEeCCcHHHHHHHHH
Confidence 358889999999999999888886 99999999999999999999999999999885 3 49999999999999999
Q ss_pred HHHcCCcEEEEecCC-CCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHH
Q 023814 88 AASRGYKLIIIMPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPE 166 (276)
Q Consensus 88 a~~~g~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (276)
|+++|++|+||||++ +++.|+.+++.+||+|+.+++ +++++.+.+++++++. ++|+++++ ||.+++ ||+|+++|
T Consensus 134 aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-g~y~~~~~-np~~~~-G~~t~a~E 208 (397)
T PRK06260 134 AARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG--NFDDALDMVVELAKEG-KIYLLNSI-NPFRLE-GQKTIGFE 208 (397)
T ss_pred HHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--cHHHHHHHHHHHHhhC-CEEeecCC-Cchhhc-chhhHHHH
Confidence 999999999999997 789999999999999999985 5889999999998876 78888887 999985 99999999
Q ss_pred HHhhhCC-CcCEEEEecCCCcchHHHHHHHHhhCC------CcEEEEEecCCCcccc----CCCC-------cccccccC
Q 023814 167 IWNDSGG-KVDAFIAGIGTGGTVTGAGRFLKEKNP------NIKVYGIEPSESAVLN----GGQP-------GKHLIQGI 228 (276)
Q Consensus 167 i~~q~~~-~~d~vvvpvG~Gg~~~Gi~~~~~~~~~------~~~vigVe~~~~~~~~----~~~~-------~~~~~~gi 228 (276)
|++|+++ .||+||+|+|+||+++|++++|+++.+ .+|||+||+++++++. .+.. ..+..+++
T Consensus 209 i~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i 288 (397)
T PRK06260 209 IADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAI 288 (397)
T ss_pred HHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeee
Confidence 9999976 699999999999999999999998763 4799999999997653 2221 12334444
Q ss_pred CCCCCccc------ccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 229 GAGVIPPV------LDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 229 ~~~~~~~~------~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
..+. |.. ..++..++++.|+|+|+++++++|++++||++||+||+++
T Consensus 289 ~i~~-p~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaal 341 (397)
T PRK06260 289 RIGN-PVNAPKALRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVEPASAASV 341 (397)
T ss_pred EeCC-CCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeCchHHHHH
Confidence 4321 211 2334567899999999999999999999999999999874
No 53
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-54 Score=354.35 Aligned_cols=266 Identities=23% Similarity=0.340 Sum_probs=236.7
Q ss_pred ccccchhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHH
Q 023814 2 EDKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTG 81 (276)
Q Consensus 2 ~~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g 81 (276)
++....++|+.+++..||.+.++.+.+..|.+||+|+|++|.+|+||.|||.+.+..+.++.+ .++|++.||||||
T Consensus 10 ~dv~~A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~----~kgvithSSGNHa 85 (323)
T KOG1251|consen 10 EDVRAAHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKR----AKGVITHSSGNHA 85 (323)
T ss_pred HHHHHHHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhh----cCceEeecCCcHH
Confidence 355678999999999999999999999999999999999999999999999999988874443 3459999999999
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhh
Q 023814 82 IGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYE 161 (276)
Q Consensus 82 ~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (276)
+|+|++|+.+|+|++||||++.|..|+..++.|||+|+++++. .+++.+.++++.++. +.+.++||++|..+ +||+
T Consensus 86 qAlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~--~~sRE~va~~ltee~-g~~~i~Py~~p~vI-aGqg 161 (323)
T KOG1251|consen 86 QALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEPT--VESRESVAKDLTEET-GYYLIHPYNHPSVI-AGQG 161 (323)
T ss_pred HHHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecCc--cchHHHHHHHHHHhc-CcEEeCCCCCccee-eccc
Confidence 9999999999999999999999999999999999999999964 567788899999987 78899999999998 6999
Q ss_pred chHHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcc----ccCCCC-----cccccccCCC--
Q 023814 162 TTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV----LNGGQP-----GKHLIQGIGA-- 230 (276)
Q Consensus 162 t~~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~----~~~~~~-----~~~~~~gi~~-- 230 (276)
|++.|++||.+ .+|.+|||+|+||+++|++...+.+.|+++|++|||++.+. +..+.. ..++++|...
T Consensus 162 TiA~ElleqVg-~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~ 240 (323)
T KOG1251|consen 162 TIALELLEQVG-EIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSH 240 (323)
T ss_pred hHHHHHHHhhC-ccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhhcc
Confidence 99999999995 89999999999999999999999999999999999988753 222322 3445666654
Q ss_pred -CCCcccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 231 -GVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 231 -~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
+..+|.+.++++|+++.|+|+|+.++++.++++-.+.+||+++.+|
T Consensus 241 lG~~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vEPTa~lgf 287 (323)
T KOG1251|consen 241 LGPLTWPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVEPTAALGF 287 (323)
T ss_pred ccccchHHHHHHhhhheeecHHHHHHHHHHHHHHHheeeccchhHHH
Confidence 3367888899999999999999999999999999999999998764
No 54
>PLN02569 threonine synthase
Probab=100.00 E-value=2e-53 Score=394.06 Aligned_cols=260 Identities=18% Similarity=0.146 Sum_probs=222.1
Q ss_pred HHhcccCCCcceecccccCC-CC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 023814 10 DVTELIGHTPMVYLNNVVDG-CV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (276)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~-~g-~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~ 87 (276)
.+++++|+|||+++++|+.. +| .+||+|+|++|||||||||++.+++..+.+.|........|+++|+||||.|+|++
T Consensus 126 ~vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAay 205 (484)
T PLN02569 126 IVSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAY 205 (484)
T ss_pred ceecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHH
Confidence 37889999999999999887 77 58999999999999999999999999998876422112459999999999999999
Q ss_pred HHHcCCcEEEEecCC-CCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHH
Q 023814 88 AASRGYKLIIIMPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPE 166 (276)
Q Consensus 88 a~~~g~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (276)
|+++|++|+||||++ .+..|+.+|+.+||+|+.+++ +|+++++.+++++++. ++|+++++ ||.+++ ||+|+++|
T Consensus 206 aa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g--~~d~a~~~a~e~~~~~-~~~~~n~~-Np~~ie-G~kT~a~E 280 (484)
T PLN02569 206 CAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT--DFDGCMRLIREVTAEL-PIYLANSL-NSLRLE-GQKTAAIE 280 (484)
T ss_pred HHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEecCCC-CcchhH-hHHHHHHH
Confidence 999999999999996 788999999999999999995 6899999999988876 68888888 999986 99999999
Q ss_pred HHhhhCCC-cCEEEEecCCCcchHHHHHHHHhhC------CCcEEEEEecCCCcccc----CCC-------CcccccccC
Q 023814 167 IWNDSGGK-VDAFIAGIGTGGTVTGAGRFLKEKN------PNIKVYGIEPSESAVLN----GGQ-------PGKHLIQGI 228 (276)
Q Consensus 167 i~~q~~~~-~d~vvvpvG~Gg~~~Gi~~~~~~~~------~~~~vigVe~~~~~~~~----~~~-------~~~~~~~gi 228 (276)
|++|++++ ||+||+|+|+||+++|++++|+++. +.+|||+||+++++++. .+. ..++.+++|
T Consensus 281 I~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi 360 (484)
T PLN02569 281 ILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRAYKSGWEEFKPVKANPTFASAI 360 (484)
T ss_pred HHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHHHHcCCCccccCCCCCccchhh
Confidence 99999765 9999999999999999999999874 45899999999997654 222 134566777
Q ss_pred CCCCCccccc------ccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 229 GAGVIPPVLD------VAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 229 ~~~~~~~~~~------~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
+.+ .|..+. .+.-+.++.|+|+|+++++++ ++++||++||+||++|
T Consensus 361 ~i~-~P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~-a~~~Gi~vepssAaal 412 (484)
T PLN02569 361 QIG-DPVSIDRAVYALKESNGIVEEATEEELMDAQAE-ADKTGMFLCPHTGVAL 412 (484)
T ss_pred ccC-CCccHHHHHHHHHHhCCEEEEECHHHHHHHHHH-HHHCCcEECchHHHHH
Confidence 665 344322 223345799999999999999 8899999999999875
No 55
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=8.9e-54 Score=390.39 Aligned_cols=268 Identities=20% Similarity=0.195 Sum_probs=224.7
Q ss_pred cchhHHH--hcccCCCcceecccccCCCC-ceEEEEeCCC-CCCCChhhHHHHHHHHHHHH--cCCC-------------
Q 023814 5 CEIKKDV--TELIGHTPMVYLNNVVDGCV-ARIAAKLEMM-QPCSSVKDRIAYSMIKDAED--KGLI------------- 65 (276)
Q Consensus 5 ~~~~~~i--~~~~~~TPl~~~~~l~~~~g-~~v~~K~E~~-~ptGS~K~R~a~~~~~~a~~--~g~~------------- 65 (276)
...++++ ...+++|||+++++|++.+| .+||+|+|++ |||||||+|++.+.+..+.. .+.-
T Consensus 30 ~~a~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~ 109 (399)
T PRK08206 30 KKARAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGE 109 (399)
T ss_pred HHHHHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhH
Confidence 4466778 56899999999999998888 6999999998 59999999999998887753 2210
Q ss_pred ----CCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhC
Q 023814 66 ----TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRT 141 (276)
Q Consensus 66 ----~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 141 (276)
.++ .+|+++|+||||+|+|++|+.+|++|+||||+++++.|+..|+.+||+|+.++. +++++.+.+.+++++.
T Consensus 110 ~~~~~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~ 186 (399)
T PRK08206 110 VREKLGD-ITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDG--NYDDSVRLAAQEAQEN 186 (399)
T ss_pred HHHhccC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHHc
Confidence 012 249999999999999999999999999999999999999999999999999994 5889999999998876
Q ss_pred CCccccC-----CCCC-CcchHhhhhchHHHHHhhhCC---CcCEEEEecCCCcchHHHHHHHHhhC--CCcEEEEEecC
Q 023814 142 PNGYILG-----QFEN-PANPEIHYETTGPEIWNDSGG---KVDAFIAGIGTGGTVTGAGRFLKEKN--PNIKVYGIEPS 210 (276)
Q Consensus 142 ~~~~~~~-----~~~~-~~~~~~g~~t~~~Ei~~q~~~---~~d~vvvpvG~Gg~~~Gi~~~~~~~~--~~~~vigVe~~ 210 (276)
+++|++ ||+| |.++.+||.|+++||++|+++ .||+||+|+|+||+++|++.+|++++ +.+|||+|||+
T Consensus 187 -g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~ 265 (399)
T PRK08206 187 -GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPD 265 (399)
T ss_pred -CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCC
Confidence 777775 6765 555557999999999999975 59999999999999999999999984 47999999999
Q ss_pred CCcccc----CCCC------cccccccCCCCC---CcccccccccCeEEEeCHHHHHHHHHHHHH----HcCCeeecCcc
Q 023814 211 ESAVLN----GGQP------GKHLIQGIGAGV---IPPVLDVAMLDEVITVSSEEAIETSKLLAL----KEGLLVRLCFK 273 (276)
Q Consensus 211 ~~~~~~----~~~~------~~~~~~gi~~~~---~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~----~eGi~~~pss~ 273 (276)
+++++. .+.+ ..+..+++.++. .++.+.++.+|+++.|+|+|+.+++++|++ ++|+++|||||
T Consensus 266 gs~~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgA 345 (399)
T PRK08206 266 QADCLYQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGESGA 345 (399)
T ss_pred CCchHHHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecchHH
Confidence 997653 2322 134556675543 234456678999999999999999999996 78999999999
Q ss_pred ccC
Q 023814 274 YCF 276 (276)
Q Consensus 274 ~al 276 (276)
++|
T Consensus 346 a~l 348 (399)
T PRK08206 346 VGL 348 (399)
T ss_pred HHH
Confidence 874
No 56
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=2.4e-52 Score=386.62 Aligned_cols=253 Identities=19% Similarity=0.222 Sum_probs=214.3
Q ss_pred HHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHH
Q 023814 10 DVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAA 89 (276)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~ 89 (276)
.+++++++|||++++ ++..+|.+||+|+|++|||||||||++.+++.++++.|. .+|+++|+||||+|+|++|+
T Consensus 59 ~v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa 132 (442)
T PRK05638 59 IISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYAA-----NGFIVASDGNAAASVAAYSA 132 (442)
T ss_pred ccccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCC-----CEEEEeCCChHHHHHHHHHH
Confidence 367899999999984 666678899999999999999999999999999998874 44999999999999999999
Q ss_pred HcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHHHHh
Q 023814 90 SRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWN 169 (276)
Q Consensus 90 ~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 169 (276)
++|++|+||||+++++.|+.+|+.+||+|+.+++ +++++.+.+++++++. ++|++++++||.+++ ||+|+++||++
T Consensus 133 ~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-~~~~~~~~~np~~~e-G~~t~a~Ei~e 208 (442)
T PRK05638 133 RAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGE--SVDEAIEYAEELARLN-GLYNVTPEYNIIGLE-GQKTIAFELWE 208 (442)
T ss_pred HcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECC--CHHHHHHHHHHHHHhC-CeEecCCCCChhHhh-hHHHHHHHHHH
Confidence 9999999999999999999999999999999984 6889999999988875 789999999999996 99999999999
Q ss_pred hhCCCcCEEEEecCCCcchHHHHHHHHhhCC------CcEEEEEecCCCcccc----CCCC--cccccccCCCCCCcc--
Q 023814 170 DSGGKVDAFIAGIGTGGTVTGAGRFLKEKNP------NIKVYGIEPSESAVLN----GGQP--GKHLIQGIGAGVIPP-- 235 (276)
Q Consensus 170 q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~------~~~vigVe~~~~~~~~----~~~~--~~~~~~gi~~~~~~~-- 235 (276)
|++ ||+||+|+|+||+++|++++|+++.+ .+|||+|||++++++. ++.. ..+...++..+. |.
T Consensus 209 q~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~~~~~~t~a~gl~~~~-p~~~ 285 (442)
T PRK05638 209 EIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIASEILGNKTKCNETKALGLYVKN-PVMK 285 (442)
T ss_pred HHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHHHHHhcCCCCCCCceeeeEeeCC-CCCH
Confidence 995 99999999999999999999999875 3799999999987653 2221 223344553321 21
Q ss_pred ----cccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 236 ----VLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 236 ----~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
...+++.+.++.|+|+++.++.+.++ ++||++|||||+++
T Consensus 286 ~~~~~~i~~~~g~~~~v~d~~i~~a~~~l~-~eGi~~epssaaa~ 329 (442)
T PRK05638 286 EYVSEAIKESGGTAVVVNEEEIMAGEKLLA-KEGIFAELSSAVVM 329 (442)
T ss_pred HHHHHHHHHhCCEEEEECHHHHHHHHHHHH-hcCceecchHHHHH
Confidence 11234456788899888888777665 57999999999874
No 57
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=1.7e-51 Score=353.96 Aligned_cols=220 Identities=45% Similarity=0.623 Sum_probs=206.1
Q ss_pred CcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEE
Q 023814 18 TPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLII 97 (276)
Q Consensus 18 TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~i 97 (276)
|||++++++++..+.+||+|+|++|||||||||++.+++..+.++|.+ ++. .||++|+||||.|+|++|+++|++|++
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~~~-~vv~~ssGN~g~alA~~a~~~g~~~~v 78 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-PKG-VIIESTGGNTGIALAAAAARLGLKCTI 78 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-CCC-EEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 899999999887778999999999999999999999999999998865 444 499999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHHHHhhhCC-CcC
Q 023814 98 IMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGG-KVD 176 (276)
Q Consensus 98 vvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~-~~d 176 (276)
|+|.+.++.|+++|+.+|++|+.++.+ ++++.+.+++++++.++++|+++|+|+.+++ ||.++++||++|++. .||
T Consensus 79 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~-g~~~~~~Ei~~q~~~~~~d 155 (244)
T cd00640 79 VMPEGASPEKVAQMRALGAEVVLVPGD--FDDAIALAKELAEEDPGAYYVNQFDNPANIA-GQGTIGLEILEQLGGQKPD 155 (244)
T ss_pred EECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhCCCCEecCCCCCHHHHH-HHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999954 8899999999999855899999999999996 899999999999976 599
Q ss_pred EEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcccccccCCCCCCcccccccccCeEEEeCHHHHHHH
Q 023814 177 AFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIET 256 (276)
Q Consensus 177 ~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~d~~~~v~d~e~~~a 256 (276)
+||+|+|+||+++|++.+|++.+|.++||+||| +++.|+|+|++++
T Consensus 156 ~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~----------------------------------~~~~v~d~~~~~a 201 (244)
T cd00640 156 AVVVPVGGGGNIAGIARALKELLPNVKVIGVEP----------------------------------EVVTVSDEEALEA 201 (244)
T ss_pred EEEEecCccHHHHHHHHHHHHhCCCCEEEEEee----------------------------------eEEEECHHHHHHH
Confidence 999999999999999999999999999999998 8899999999999
Q ss_pred HHHHHHHcCCeeecCccccC
Q 023814 257 SKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 257 ~~~l~~~eGi~~~pss~~al 276 (276)
+++|++++|+++||+||+++
T Consensus 202 ~~~l~~~~gi~~~pssa~~~ 221 (244)
T cd00640 202 IRLLAREEGILVEPSSAAAL 221 (244)
T ss_pred HHHHHHHcCceECHhHHHHH
Confidence 99999999999999998764
No 58
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=4.3e-51 Score=365.82 Aligned_cols=257 Identities=24% Similarity=0.213 Sum_probs=216.8
Q ss_pred HHHhcccCCCcceecccccCCCCc-eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 023814 9 KDVTELIGHTPMVYLNNVVDGCVA-RIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (276)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~-~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~ 87 (276)
+.+...+++|||++++++...+|. +||+|+|++|||||||||++.+++.++.++|. .+||++|+||||+|+|++
T Consensus 15 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~vv~aSsGN~g~a~A~~ 89 (328)
T TIGR00260 15 DLVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGN-----DTVLCASTGNTGAAAAAY 89 (328)
T ss_pred hhhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHH
Confidence 457888999999999999887886 99999999999999999999999999998885 359999999999999999
Q ss_pred HHHcCCcEEEEecCC-CCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCC--CcchHhhhhchH
Q 023814 88 AASRGYKLIIIMPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFEN--PANPEIHYETTG 164 (276)
Q Consensus 88 a~~~g~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~g~~t~~ 164 (276)
|+.+|++|+||||++ +++.|+..++.+||+|+.+++ +++++.+.+++++++. +.++.++ .| |.+++ ||.|++
T Consensus 90 a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~~~~~~~~~~~~~~~~-~~~~~~~-~n~~~~~~~-g~~t~~ 164 (328)
T TIGR00260 90 AGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--NFDDAQRLVKQLFGDK-EALGLNS-VNSIPYRLE-GQKTYA 164 (328)
T ss_pred hccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--CHHHHHHHHHHHHhhc-Ceeeccc-CCCCCeEee-eehhHH
Confidence 999999999999998 899999999999999999985 5889999999988875 4455544 45 77775 899999
Q ss_pred HHHHhhhCC-CcCEEEEecCCCcchHHHHHHHHhhCC-----CcEEEEEecCCCcccc-----CCCCc-----ccccccC
Q 023814 165 PEIWNDSGG-KVDAFIAGIGTGGTVTGAGRFLKEKNP-----NIKVYGIEPSESAVLN-----GGQPG-----KHLIQGI 228 (276)
Q Consensus 165 ~Ei~~q~~~-~~d~vvvpvG~Gg~~~Gi~~~~~~~~~-----~~~vigVe~~~~~~~~-----~~~~~-----~~~~~gi 228 (276)
+||++|+++ .||+||+|+|+||+++|++.+|++... .+++++|||.+++++. .++.. .+..+++
T Consensus 165 ~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~~~l 244 (328)
T TIGR00260 165 FEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAADIVRAFLESGQWEPIEDPATLSTAI 244 (328)
T ss_pred HHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEEEcCCCChHHHHHHcCCCcCcCCCCCccCcce
Confidence 999999974 799999999999999999999998521 2499999999995432 23221 2334555
Q ss_pred CCCCCccc------ccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 229 GAGVIPPV------LDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 229 ~~~~~~~~------~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
+.+ .|.. +.++++|+.+.|+|+|+++++++|++++||++||+||+++
T Consensus 245 ~~~-~p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~al 297 (328)
T TIGR00260 245 DIG-NPANWERALELFRRSNGNAEDVSDEEILEAIKLLAREEGYFVEPHSAVSV 297 (328)
T ss_pred ecC-CCCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHHHhcCeeECchHHHHH
Confidence 433 2222 2346789999999999999999999999999999999874
No 59
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=4.3e-51 Score=369.22 Aligned_cols=265 Identities=18% Similarity=0.203 Sum_probs=221.0
Q ss_pred hhHHHhcccCCCcceecccccCCCC-ceEEEEeCCCCC-CCChhhHHHHHHHHHHHHc----------------CCCCC-
Q 023814 7 IKKDVTELIGHTPMVYLNNVVDGCV-ARIAAKLEMMQP-CSSVKDRIAYSMIKDAEDK----------------GLITP- 67 (276)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g-~~v~~K~E~~~p-tGS~K~R~a~~~~~~a~~~----------------g~~~~- 67 (276)
.+.++..+ .+|||++++.|++.+| .+||+|+|++|+ |||||+|++.+.+..+.++ +.+.+
T Consensus 13 ~~~~~~~~-~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (376)
T TIGR01747 13 FHKKIPGY-RPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEK 91 (376)
T ss_pred HHHhCCCC-CCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhh
Confidence 45666555 8999999999999899 599999999985 8999999999999887552 11111
Q ss_pred -CCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccc
Q 023814 68 -GKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYI 146 (276)
Q Consensus 68 -~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (276)
+..+||++|+||||+|+|++|+.+|++|+||||+++++.|+..|+.+||+|+.+++ +|+++.+.+++++++. ++++
T Consensus 92 ~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~--~~~~a~~~a~~~~~~~-g~~~ 168 (376)
T TIGR01747 92 MGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDM--NYDDTVRLAMQMAQQH-GWVV 168 (376)
T ss_pred cCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CcEE
Confidence 13459999999999999999999999999999999999999999999999999984 5889999999988876 6777
Q ss_pred cC-----CCCC--CcchHhhhhchHHHHHhhhCC----CcCEEEEecCCCcchHHHHHHHHhhCC--CcEEEEEecCCCc
Q 023814 147 LG-----QFEN--PANPEIHYETTGPEIWNDSGG----KVDAFIAGIGTGGTVTGAGRFLKEKNP--NIKVYGIEPSESA 213 (276)
Q Consensus 147 ~~-----~~~~--~~~~~~g~~t~~~Ei~~q~~~----~~d~vvvpvG~Gg~~~Gi~~~~~~~~~--~~~vigVe~~~~~ 213 (276)
++ +|+| |..+ .||+|+++||++|+++ .||+||+|+|+||+++|++.++++..+ .++||+|||++++
T Consensus 169 ~~~~~~~~~~~~~~~ii-~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~ 247 (376)
T TIGR01747 169 VQDTAWEGYEKIPTWIM-QGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKAD 247 (376)
T ss_pred eccccccccccCCchHH-HHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCC
Confidence 76 4655 4444 6999999999999963 699999999999999999999987654 3799999999998
Q ss_pred ccc----C--CCC------cccccccCCCCC---CcccccccccCeEEEeCHHHHHHHHHHHHHHc----CCeeecCccc
Q 023814 214 VLN----G--GQP------GKHLIQGIGAGV---IPPVLDVAMLDEVITVSSEEAIETSKLLALKE----GLLVRLCFKY 274 (276)
Q Consensus 214 ~~~----~--~~~------~~~~~~gi~~~~---~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~e----Gi~~~pss~~ 274 (276)
++. . +++ ..+.+++|+++. .++.+.++..+.++.|+|+|+.+++++|++.. ++++|||+++
T Consensus 248 ~~~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epaga~ 327 (376)
T TIGR01747 248 CLYQSAVKKDGDIVNVGGDMATIMAGLACGEPNPISWEILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPRIISGESGAV 327 (376)
T ss_pred HHHHHHHhcCCCeEEcCCCccccccccccCCcchHHHHHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCchHH
Confidence 763 2 332 135667887653 24556678899999999999999999999865 5999999998
Q ss_pred cC
Q 023814 275 CF 276 (276)
Q Consensus 275 al 276 (276)
++
T Consensus 328 ~l 329 (376)
T TIGR01747 328 GL 329 (376)
T ss_pred HH
Confidence 73
No 60
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=6.7e-50 Score=362.38 Aligned_cols=263 Identities=22% Similarity=0.211 Sum_probs=209.4
Q ss_pred HHHhcccC-CCcceecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 023814 9 KDVTELIG-HTPMVYLNNVVDGC-VARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (276)
Q Consensus 9 ~~i~~~~~-~TPl~~~~~l~~~~-g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~ 86 (276)
..+..+++ +|||+++++|++.+ |.+||+|+|++|||||||+|.+..++..+++.|+ ...|+++|+||||+|+|+
T Consensus 53 ~~~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~ 128 (402)
T PRK13028 53 YLLKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGK----KRLIAETGAGQHGVATAT 128 (402)
T ss_pred HHHHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHH
Confidence 44566776 79999999999888 5899999999999999999999999999999886 444667899999999999
Q ss_pred HHHHcCCcEEEEecCCCCH---HHHHHHHHCCCEEEEeCC-CCChhHHHHHHHH-HHHhCCCccccCC-C----CCCcch
Q 023814 87 IAASRGYKLIIIMPSTYSI---ERRIILRALGAEVYLADP-AVGFEGFVKKGEE-ILNRTPNGYILGQ-F----ENPANP 156 (276)
Q Consensus 87 ~a~~~g~~~~ivvp~~~~~---~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~-~~~~~~~~~~~~~-~----~~~~~~ 156 (276)
+|+++|++|+||||+.... .++.+|+.+||+|+.++. ..+++++.+.+.+ ++++.++.+|+.+ . ..|.++
T Consensus 129 aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v 208 (402)
T PRK13028 129 AAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMV 208 (402)
T ss_pred HHHHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHH
Confidence 9999999999999986433 568899999999999984 3468888888855 4555345666532 1 123445
Q ss_pred HhhhhchHHHHHhhhC----CCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCC--------CccccCCCCc---
Q 023814 157 EIHYETTGPEIWNDSG----GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSE--------SAVLNGGQPG--- 221 (276)
Q Consensus 157 ~~g~~t~~~Ei~~q~~----~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~--------~~~~~~~~~~--- 221 (276)
..||++++.||.+|+. ..||+||+|||+||+++|++.+|++ .++++||||||.+ ++++..+++.
T Consensus 209 ~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~ 287 (402)
T PRK13028 209 RDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIH 287 (402)
T ss_pred HHHhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCCCCcccccccccccCCCcceec
Confidence 5699999999999972 3599999999999999999999986 4889999999998 5566544331
Q ss_pred -----------------ccccccCCCCC-Cccc--ccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 222 -----------------KHLIQGIGAGV-IPPV--LDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 222 -----------------~~~~~gi~~~~-~~~~--~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
.+...+++.+. .|.. +.....++++.|+|+|+++++++|+++|||+++++||+++
T Consensus 288 g~~~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~~~~~v~VtD~eal~a~~~La~~eGIi~~~~sa~al 362 (402)
T PRK13028 288 GFKSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDEEALDAFFLLSRTEGIIPALESSHAV 362 (402)
T ss_pred ccceeeccccCCCcCCccceeccccCCCCCHHHHHHHHhcCcEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHH
Confidence 12233444322 1221 3345568999999999999999999999999999999874
No 61
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=1.1e-49 Score=363.87 Aligned_cols=261 Identities=22% Similarity=0.239 Sum_probs=207.1
Q ss_pred hhHHHhcccCCCcceecccccCCCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEE-eCCChHHHH
Q 023814 7 IKKDVTELIGHTPMVYLNNVVDGCV--ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIE-LTSGNTGIG 83 (276)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g--~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~-~ssGN~g~a 83 (276)
+.+.+.+..++|||+++++|++.+| ++||+|+|++|||||||+|++.+++.+++++|. .+ +++ +|+||||+|
T Consensus 58 v~~~~~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~----~~-~vtetssGN~G~a 132 (419)
T TIGR01415 58 VLKRYAQIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGA----KR-LVTETGAGQWGSA 132 (419)
T ss_pred HHHHHHhcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCC----Ce-EEEecCchHHHHH
Confidence 4444454546899999999998776 699999999999999999999999999999996 34 564 689999999
Q ss_pred HHHHHHHcCCcEEEEecCCC---CHHHHHHHHHCCCEEEEeCCCCChhH------------------HHHHHHHHHHhCC
Q 023814 84 LAFIAASRGYKLIIIMPSTY---SIERRIILRALGAEVYLADPAVGFEG------------------FVKKGEEILNRTP 142 (276)
Q Consensus 84 ~A~~a~~~g~~~~ivvp~~~---~~~~~~~~~~~Ga~v~~~~~~~~~~~------------------~~~~a~~~~~~~~ 142 (276)
+|++|+++|++|+||||+.. ++.|+.+|+.+||+|+.++.+ +++ ++..+.+.+++.+
T Consensus 133 lA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~--~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~ 210 (419)
T TIGR01415 133 LSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSE--FTEFGREVLKEDPDHPGSLGIAISEAIEYALSDE 210 (419)
T ss_pred HHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCc--hhhHHHHhhhcccccccchHHHHHHHHHHHHhCC
Confidence 99999999999999999854 568899999999999999853 222 3556777776654
Q ss_pred -CccccCCCCCCcchHhhhhchHHHHHhhhCC---CcCEEEEecCCCcchHHHHHHHHhh----CCCcEEEEEecCCCcc
Q 023814 143 -NGYILGQFENPANPEIHYETTGPEIWNDSGG---KVDAFIAGIGTGGTVTGAGRFLKEK----NPNIKVYGIEPSESAV 214 (276)
Q Consensus 143 -~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~---~~d~vvvpvG~Gg~~~Gi~~~~~~~----~~~~~vigVe~~~~~~ 214 (276)
..|+++++.| . ...||.++|+||++|++. .||+||+|+|+||+++|++.+|.+. .+++|||+|||++|+.
T Consensus 211 ~~~y~~~~~~n-~-~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~ 288 (419)
T TIGR01415 211 DTKYSLGSVLN-H-VLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPT 288 (419)
T ss_pred CCEEEeCCCCc-H-HHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChh
Confidence 3455555544 2 336999999999999964 4999999999999999999988432 2579999999999987
Q ss_pred ccCCCC-----------cccccccCCCCCCcccc-----------------cccccCeEEEeCHHHHHHHHHHHHHHcCC
Q 023814 215 LNGGQP-----------GKHLIQGIGAGVIPPVL-----------------DVAMLDEVITVSSEEAIETSKLLALKEGL 266 (276)
Q Consensus 215 ~~~~~~-----------~~~~~~gi~~~~~~~~~-----------------~~~~~d~~~~v~d~e~~~a~~~l~~~eGi 266 (276)
+..+.. ....+.+++..+.|..+ ....+++.+.|+|+|+++++++|+++|||
T Consensus 289 l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi 368 (419)
T TIGR01415 289 LTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGI 368 (419)
T ss_pred hhcCcccccccccccCCcceeeeecCCCCCCcceeccccccCCccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCC
Confidence 765431 11233455555444322 12344578999999999999999999999
Q ss_pred eeecCccccC
Q 023814 267 LVRLCFKYCF 276 (276)
Q Consensus 267 ~~~pss~~al 276 (276)
+++|+||+++
T Consensus 369 ~~epssa~al 378 (419)
T TIGR01415 369 VPAPESAHAI 378 (419)
T ss_pred ccccHHHHHH
Confidence 9999999874
No 62
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=1.9e-50 Score=367.29 Aligned_cols=264 Identities=18% Similarity=0.167 Sum_probs=215.4
Q ss_pred hHHHhcccCCCcceecccccCCCC-ceEEEEeCCCCC-CCChhhHHHHHHHHHHHH--cCCC--------------C--C
Q 023814 8 KKDVTELIGHTPMVYLNNVVDGCV-ARIAAKLEMMQP-CSSVKDRIAYSMIKDAED--KGLI--------------T--P 67 (276)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~g-~~v~~K~E~~~p-tGS~K~R~a~~~~~~a~~--~g~~--------------~--~ 67 (276)
+.++ ..+.+|||++++.|++.+| .+||+|+|++|+ |||||+||+.+.+..+.+ .|.. . .
T Consensus 33 ~~~~-~~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~ 111 (396)
T TIGR03528 33 HQSF-PGYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKL 111 (396)
T ss_pred HhcC-CCCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhc
Confidence 3444 3568999999999998888 699999999985 999999999999987632 2210 0 0
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCcccc
Q 023814 68 GKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYIL 147 (276)
Q Consensus 68 ~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (276)
...+||++|+||||+|+|++|+++|++|+||||+++++.|++.|+.+||+|+.++. +++++.+.+++++++. +++|+
T Consensus 112 ~~~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~~-g~~~v 188 (396)
T TIGR03528 112 GDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDL--NYDDAVRLAWKMAQEN-GWVMV 188 (396)
T ss_pred cCcEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEee
Confidence 01259999999999999999999999999999999999999999999999999984 5889999999998876 77777
Q ss_pred C-----CCCC--CcchHhhhhchHHHHHhhhC----CCcCEEEEecCCCcchHHHHHHHHhh-CCC-cEEEEEecCCCcc
Q 023814 148 G-----QFEN--PANPEIHYETTGPEIWNDSG----GKVDAFIAGIGTGGTVTGAGRFLKEK-NPN-IKVYGIEPSESAV 214 (276)
Q Consensus 148 ~-----~~~~--~~~~~~g~~t~~~Ei~~q~~----~~~d~vvvpvG~Gg~~~Gi~~~~~~~-~~~-~~vigVe~~~~~~ 214 (276)
+ +|+| +..+ +||.|+++||++|++ +.||+||+|+|+||+++|++.++++. .+. ++||+|||+++++
T Consensus 189 ~~~~~~~~~~~~~~~i-~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~ 267 (396)
T TIGR03528 189 QDTAWEGYEKIPTWIM-QGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADC 267 (396)
T ss_pred ccccccccccCchHHH-HHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCch
Confidence 5 5765 3333 699999999999996 26999999999999999999989654 343 5999999999987
Q ss_pred ccC------CCC------cccccccCCCCC---CcccccccccCeEEEeCHHHHHHHHHHHHH----HcCCeeecCcccc
Q 023814 215 LNG------GQP------GKHLIQGIGAGV---IPPVLDVAMLDEVITVSSEEAIETSKLLAL----KEGLLVRLCFKYC 275 (276)
Q Consensus 215 ~~~------~~~------~~~~~~gi~~~~---~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~----~eGi~~~pss~~a 275 (276)
+.. +.+ ..+.+++++++. .++.+.++++|+++.|+|+|+.+++++|++ ++++++|||||++
T Consensus 268 l~~s~~~~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsga~~ 347 (396)
T TIGR03528 268 LYRSAIADDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVISGESGAVG 347 (396)
T ss_pred HHHHHHhcCCCEEEeCCCccceecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceeecCcHHHH
Confidence 642 221 124566776532 234455678999999999999999999998 6799999999986
Q ss_pred C
Q 023814 276 F 276 (276)
Q Consensus 276 l 276 (276)
+
T Consensus 348 ~ 348 (396)
T TIGR03528 348 T 348 (396)
T ss_pred H
Confidence 3
No 63
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=1.3e-49 Score=361.79 Aligned_cols=264 Identities=21% Similarity=0.253 Sum_probs=204.6
Q ss_pred hHHHhcccC-CCcceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHH
Q 023814 8 KKDVTELIG-HTPMVYLNNVVDGCV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLA 85 (276)
Q Consensus 8 ~~~i~~~~~-~TPl~~~~~l~~~~g-~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A 85 (276)
+..+..+++ +|||+++++|++.+| .+||+|+|++|||||||+|++..++..+++.|. ...|+++|+||||+|+|
T Consensus 40 ~~~~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~----~~vi~e~ssGN~G~alA 115 (385)
T TIGR00263 40 NELLRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRIIAETGAGQHGVATA 115 (385)
T ss_pred HHHHHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHH
Confidence 344455554 899999999998877 899999999999999999999999999888885 44455799999999999
Q ss_pred HHHHHcCCcEEEEecCC-CCH--HHHHHHHHCCCEEEEeCCC-CChhHHHH-HHHHHHHhCCCcccc-CCCCC----Ccc
Q 023814 86 FIAASRGYKLIIIMPST-YSI--ERRIILRALGAEVYLADPA-VGFEGFVK-KGEEILNRTPNGYIL-GQFEN----PAN 155 (276)
Q Consensus 86 ~~a~~~g~~~~ivvp~~-~~~--~~~~~~~~~Ga~v~~~~~~-~~~~~~~~-~a~~~~~~~~~~~~~-~~~~~----~~~ 155 (276)
++|+++|++|+||||+. .+. .++++|+.+||+|+.++.. ..++++.+ .+.+++++.++.+|+ .++.| |.+
T Consensus 116 ~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~ 195 (385)
T TIGR00263 116 TAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTM 195 (385)
T ss_pred HHHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHH
Confidence 99999999999999985 443 5788999999999999753 44666644 444556554455565 33332 345
Q ss_pred hHhhhhchHHHHHhhhC----CCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCc--------cccCCCCc--
Q 023814 156 PEIHYETTGPEIWNDSG----GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA--------VLNGGQPG-- 221 (276)
Q Consensus 156 ~~~g~~t~~~Ei~~q~~----~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~--------~~~~~~~~-- 221 (276)
+..||+|+++||++|+. ..||+||+|+|+||+++|++.+|.. .|++|||||||+++. .+..+.+.
T Consensus 196 ~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~ 274 (385)
T TIGR00263 196 VRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVL 274 (385)
T ss_pred HHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEe
Confidence 55799999999999973 2589999999999999999998855 699999999999852 23323211
Q ss_pred ------------------ccccccCCCCCC-c--ccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 222 ------------------KHLIQGIGAGVI-P--PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 222 ------------------~~~~~gi~~~~~-~--~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
.+..++++.... | +.+.....|+++.|+|+|+++++++|+++|||+++||||+++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~~~~~v~Vsd~e~~~a~~~la~~egi~~~~ssaaal 350 (385)
T TIGR00263 275 HGMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATYEAITDDEALEAFKLLSRNEGIIPALESSHAL 350 (385)
T ss_pred cCcccccccCCCCcccccceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCeechHHHHHH
Confidence 122233433211 2 223445678999999999999999999999999999999874
No 64
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=2e-49 Score=358.75 Aligned_cols=264 Identities=21% Similarity=0.270 Sum_probs=205.6
Q ss_pred hHHHhcccC-CCcceecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHH
Q 023814 8 KKDVTELIG-HTPMVYLNNVVDGC-VARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLA 85 (276)
Q Consensus 8 ~~~i~~~~~-~TPl~~~~~l~~~~-g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A 85 (276)
...+..++| +|||+++++|++.+ |.+||+|+|++|||||||+|++...+..+++.|+ +..|+++|+||||+|+|
T Consensus 48 ~~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A 123 (397)
T PRK04346 48 DYLLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGK----KRIIAETGAGQHGVATA 123 (397)
T ss_pred HHHHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHH
Confidence 344566777 59999999999988 5899999999999999999999999999999886 45466689999999999
Q ss_pred HHHHHcCCcEEEEecCCC-C--HHHHHHHHHCCCEEEEeCC-CCChhHHHHHHHH-HHHhCCCcccc-CCCCC----Ccc
Q 023814 86 FIAASRGYKLIIIMPSTY-S--IERRIILRALGAEVYLADP-AVGFEGFVKKGEE-ILNRTPNGYIL-GQFEN----PAN 155 (276)
Q Consensus 86 ~~a~~~g~~~~ivvp~~~-~--~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~-~~~~~~~~~~~-~~~~~----~~~ 155 (276)
++|+++|++|+||||+.. + ..++.+|+.+||+|+.++. ..++.++.+.+.+ +.++.++.+|+ .+..+ |.+
T Consensus 124 ~~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~ 203 (397)
T PRK04346 124 TAAALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTM 203 (397)
T ss_pred HHHHHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHH
Confidence 999999999999999853 3 3578899999999999984 3467777666655 45553455554 22222 344
Q ss_pred hHhhhhchHHHHHhhhC----CCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCc--------cccCCCCc--
Q 023814 156 PEIHYETTGPEIWNDSG----GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA--------VLNGGQPG-- 221 (276)
Q Consensus 156 ~~~g~~t~~~Ei~~q~~----~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~--------~~~~~~~~-- 221 (276)
+..||+|++.||.+|+. ..||+||+|||+||+++|++.+|++ .|++|||||||.++. ++..+++.
T Consensus 204 v~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~ 282 (397)
T PRK04346 204 VRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVL 282 (397)
T ss_pred HHHhcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCCccccccccchhhcCCeeee
Confidence 55699999999999973 3699999999999999999999976 889999999999862 22222221
Q ss_pred ------------------ccccccCCCCCC-c--ccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 222 ------------------KHLIQGIGAGVI-P--PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 222 ------------------~~~~~gi~~~~~-~--~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
.+...|+..+.. | ..+.....++++.|+|+|+++++++|+++|||+.+++|++|+
T Consensus 283 ~g~~~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~~~~~v~VtD~eal~a~~~L~~~eGIi~~~esa~Al 358 (397)
T PRK04346 283 HGAKTYLLQDEDGQILETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDDEALEAFQLLSRLEGIIPALESSHAL 358 (397)
T ss_pred ccccceecccCCCccCCCceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCEeccHHHHHH
Confidence 112234433221 2 223345667999999999999999999999999888888763
No 65
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=3.1e-49 Score=357.48 Aligned_cols=264 Identities=22% Similarity=0.227 Sum_probs=204.6
Q ss_pred hhHHHhccc-CCCcceecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEE-eCCChHHHH
Q 023814 7 IKKDVTELI-GHTPMVYLNNVVDGC-VARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIE-LTSGNTGIG 83 (276)
Q Consensus 7 ~~~~i~~~~-~~TPl~~~~~l~~~~-g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~-~ssGN~g~a 83 (276)
++.....++ .+|||++++++++.+ +.+||+|+|++|||||||||.+..++..+.++|. .. +|+ +|+||||+|
T Consensus 23 ~~~~~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~----~~-vv~~~ssGN~g~a 97 (365)
T cd06446 23 LRELYKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KR-VIAETGAGQHGVA 97 (365)
T ss_pred HHHHhhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC----Ce-EEEecCchHHHHH
Confidence 344445444 499999999998877 5899999999999999999999999999998886 34 555 699999999
Q ss_pred HHHHHHHcCCcEEEEecCCCC---HHHHHHHHHCCCEEEEeCCC-CChhHHHHHHHHH-HHhCCC-ccccCCC----CCC
Q 023814 84 LAFIAASRGYKLIIIMPSTYS---IERRIILRALGAEVYLADPA-VGFEGFVKKGEEI-LNRTPN-GYILGQF----ENP 153 (276)
Q Consensus 84 ~A~~a~~~g~~~~ivvp~~~~---~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~-~~~~~~-~~~~~~~----~~~ 153 (276)
+|++|+++|++|+||||+..+ +.|+++|+.+||+|+.++.. ..+++++..+.+. +++.++ .|+++++ .++
T Consensus 98 lA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~ 177 (365)
T cd06446 98 TATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYP 177 (365)
T ss_pred HHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCch
Confidence 999999999999999998643 36788999999999999853 2456666555444 333223 3433332 123
Q ss_pred cchHhhhhchHHHHHhhhC----CCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCccccCC--------CC-
Q 023814 154 ANPEIHYETTGPEIWNDSG----GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGG--------QP- 220 (276)
Q Consensus 154 ~~~~~g~~t~~~Ei~~q~~----~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~~~--------~~- 220 (276)
.++++||+|+++||++|+. ..||+||+|+|+||+++|+++++++ .+++|||||||.+++.+.+. ..
T Consensus 178 ~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~~ 256 (365)
T cd06446 178 NMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTAG 256 (365)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeeccCCCcc
Confidence 4566899999999999985 2699999999999999999998877 56899999999998766421 11
Q ss_pred -------------------cccccccCCCC-CCcc--cccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 221 -------------------GKHLIQGIGAG-VIPP--VLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 221 -------------------~~~~~~gi~~~-~~~~--~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
..+.+++++.+ ..+. .+..+++|+++.|+|+|+++++++|+++|||++||+||+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~epssgaal 334 (365)
T cd06446 257 VLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPALESSHAI 334 (365)
T ss_pred eecchhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHHHHHHhcCceeCccchHHH
Confidence 11223344432 1121 24456789999999999999999999999999999999864
No 66
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=5.1e-49 Score=359.90 Aligned_cols=260 Identities=20% Similarity=0.228 Sum_probs=207.6
Q ss_pred HhcccCCCcceecccccCCCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEE-eCCChHHHHHHHH
Q 023814 11 VTELIGHTPMVYLNNVVDGCV--ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIE-LTSGNTGIGLAFI 87 (276)
Q Consensus 11 i~~~~~~TPl~~~~~l~~~~g--~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~-~ssGN~g~a~A~~ 87 (276)
+...+++|||+++++|++.+| .+||+|+|++|||||||+|++..++.++.++|. .. +++ +|+||||+|+|++
T Consensus 71 ~~~~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~----~~-~vtetgsGN~G~alA~a 145 (427)
T PRK12391 71 IYRLWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGI----KR-LTTETGAGQWGSALALA 145 (427)
T ss_pred HHcccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCC----CE-EEEccCchHHHHHHHHH
Confidence 346778999999999988776 699999999999999999999999999999996 34 665 5799999999999
Q ss_pred HHHcCCcEEEEecCCC---CHHHHHHHHHCCCEEEEeCCCCC----------------hhHHHHHHHHHHHhCCCccccC
Q 023814 88 AASRGYKLIIIMPSTY---SIERRIILRALGAEVYLADPAVG----------------FEGFVKKGEEILNRTPNGYILG 148 (276)
Q Consensus 88 a~~~g~~~~ivvp~~~---~~~~~~~~~~~Ga~v~~~~~~~~----------------~~~~~~~a~~~~~~~~~~~~~~ 148 (276)
|+++|++|+||||+.. ++.|+.+|+.+||+|+.++.+.+ ...++.++.+.+++.++.+|..
T Consensus 146 aa~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~ 225 (427)
T PRK12391 146 CALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYAL 225 (427)
T ss_pred HHHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEc
Confidence 9999999999999743 56889999999999999985311 1125667777776654555554
Q ss_pred CCCCCcchHhhhhchHHHHHhhhC---CCcCEEEEecCCCcchHHHHHHHHh---hC-CCcEEEEEecCCCccccCCCC-
Q 023814 149 QFENPANPEIHYETTGPEIWNDSG---GKVDAFIAGIGTGGTVTGAGRFLKE---KN-PNIKVYGIEPSESAVLNGGQP- 220 (276)
Q Consensus 149 ~~~~~~~~~~g~~t~~~Ei~~q~~---~~~d~vvvpvG~Gg~~~Gi~~~~~~---~~-~~~~vigVe~~~~~~~~~~~~- 220 (276)
+..+ .+...||.++|+||++|++ ..||+||+|+|+||+++|++.+|.+ .+ +++|||+|||++|+++..+..
T Consensus 226 ~s~~-~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~ 304 (427)
T PRK12391 226 GSVL-NHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYA 304 (427)
T ss_pred CCCC-cHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhcccccc
Confidence 4432 3344699999999999985 3699999999999999999997743 34 889999999999988765421
Q ss_pred -------c---ccccccCCCCCCccccc-----------------ccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCcc
Q 023814 221 -------G---KHLIQGIGAGVIPPVLD-----------------VAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFK 273 (276)
Q Consensus 221 -------~---~~~~~gi~~~~~~~~~~-----------------~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~ 273 (276)
. ...+.+++.++.|..+. ...+.+.+.|+|+|+++++++|+++|||+++|+||
T Consensus 305 ~~~gd~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~g~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~ 384 (427)
T PRK12391 305 YDFGDTAGLTPLLKMYTLGHDFVPPPIHAGGLRYHGMAPLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAPESS 384 (427)
T ss_pred ccccccccCCccceeEecCCCCCCccccccccccCCchHHHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeechHHH
Confidence 1 12355666655444331 22344889999999999999999999999999999
Q ss_pred ccC
Q 023814 274 YCF 276 (276)
Q Consensus 274 ~al 276 (276)
+++
T Consensus 385 ~al 387 (427)
T PRK12391 385 HAI 387 (427)
T ss_pred HHH
Confidence 764
No 67
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=4.5e-49 Score=357.03 Aligned_cols=265 Identities=20% Similarity=0.284 Sum_probs=206.0
Q ss_pred hhHHHhcccC-CCcceecccccCCC------CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCCh
Q 023814 7 IKKDVTELIG-HTPMVYLNNVVDGC------VARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGN 79 (276)
Q Consensus 7 ~~~~i~~~~~-~TPl~~~~~l~~~~------g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN 79 (276)
....+..++| +|||+++++|++.+ |++||+|+|++|||||||+|.+...+..+++.|+ +..|+++|+||
T Consensus 55 ~~~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~----~~vIaesgaGN 130 (410)
T PLN02618 55 LAGILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGK----KRIIAETGAGQ 130 (410)
T ss_pred HHHHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCC----CEEEEEcCcHH
Confidence 4566788896 89999999999876 5899999999999999999999999988888885 45355667999
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCC---CHHHHHHHHHCCCEEEEeCC-CCChhHHHHHH-HHHHHhCCCcccc-CCCC--
Q 023814 80 TGIGLAFIAASRGYKLIIIMPSTY---SIERRIILRALGAEVYLADP-AVGFEGFVKKG-EEILNRTPNGYIL-GQFE-- 151 (276)
Q Consensus 80 ~g~a~A~~a~~~g~~~~ivvp~~~---~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a-~~~~~~~~~~~~~-~~~~-- 151 (276)
||+|+|++|+++|++|+||||+.. +..|+.+|+.+||+|+.++. +.+++++...+ ++++++.++.+|+ .+..
T Consensus 131 hG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp 210 (410)
T PLN02618 131 HGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGP 210 (410)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCC
Confidence 999999999999999999999864 35677899999999999964 35678887444 5576654455555 2211
Q ss_pred C--CcchHhhhhchHHHHHhhh----CCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCc--------cccC
Q 023814 152 N--PANPEIHYETTGPEIWNDS----GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA--------VLNG 217 (276)
Q Consensus 152 ~--~~~~~~g~~t~~~Ei~~q~----~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~--------~~~~ 217 (276)
+ +.....++.++|.||.+|+ +..||+||+|||+||+++|++.+|+. .|++|||||||.++. ++..
T Consensus 211 ~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~~ 289 (410)
T PLN02618 211 HPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGFGLDSGKHAATLTK 289 (410)
T ss_pred CCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCCcccccccccchhc
Confidence 1 2233468999999998776 34699999999999999999999975 789999999999872 2332
Q ss_pred CCC--------------------cccccccCCCCCC-cc--cccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccc
Q 023814 218 GQP--------------------GKHLIQGIGAGVI-PP--VLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKY 274 (276)
Q Consensus 218 ~~~--------------------~~~~~~gi~~~~~-~~--~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~ 274 (276)
+++ ..+..+||..+.. |. .+.....|+++.|+|+|+++++++|+++|||+.+++|++
T Consensus 290 g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~~~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~~~sSa~ 369 (410)
T PLN02618 290 GEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDTGRAEYYSVTDEEALEAFQRLSRLEGIIPALETSH 369 (410)
T ss_pred CCcceeccccccccccccCCCCCCcchhhhhcCCCCcHHHHHHHhhcCcEEEEECHHHHHHHHHHHHHHcCceEchhHHH
Confidence 322 1122234433211 21 123346789999999999999999999999999999998
Q ss_pred cC
Q 023814 275 CF 276 (276)
Q Consensus 275 al 276 (276)
|+
T Consensus 370 a~ 371 (410)
T PLN02618 370 AL 371 (410)
T ss_pred HH
Confidence 74
No 68
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=2.4e-49 Score=359.99 Aligned_cols=256 Identities=15% Similarity=0.081 Sum_probs=209.9
Q ss_pred hcccCCCcceecccccCCCCc-eEEEE-------eCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 023814 12 TELIGHTPMVYLNNVVDGCVA-RIAAK-------LEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (276)
Q Consensus 12 ~~~~~~TPl~~~~~l~~~~g~-~v~~K-------~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a 83 (276)
....+.|||+++++|++.+|. +||+| +|++|||||||||++.+++..+.+.|. +.|+++|+||||+|
T Consensus 57 ~~~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~-----~~Vv~aSsGN~g~a 131 (398)
T TIGR03844 57 LRTRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGG-----KTLVVASAGNTGRA 131 (398)
T ss_pred CCCCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCC-----CEEEEECCCHHHHH
Confidence 346678999999999988887 99995 555999999999999999999998883 45999999999999
Q ss_pred HHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhch
Q 023814 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (276)
Q Consensus 84 ~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (276)
+|++|+++|++|+||||++++..+...++.+|++|+.+++ +|+++.+.++++++++ +++..++++||..+ .|++|+
T Consensus 132 lA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~~d~a~~~a~~~a~~~-g~~~~~~~~~p~~i-eG~~Ti 207 (398)
T TIGR03844 132 FAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--DYTDAIALADRIATLP-GFVPEGGARNVARR-DGMGTV 207 (398)
T ss_pred HHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--CHHHHHHHHHHHHHhC-CccccCCCCCHHHH-hhHHHH
Confidence 9999999999999999998654444445789999999984 6899999999998876 55444566788887 499999
Q ss_pred HHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhC-------CCcEEEEEecCCCcccc----CCCCc-----------
Q 023814 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKN-------PNIKVYGIEPSESAVLN----GGQPG----------- 221 (276)
Q Consensus 164 ~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~-------~~~~vigVe~~~~~~~~----~~~~~----------- 221 (276)
++||++|++..||+||+|+|+|+++.|++.+++++. ..+++++||+++++++. .+...
T Consensus 208 ~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~ 287 (398)
T TIGR03844 208 MLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAE 287 (398)
T ss_pred HHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHHHHHHcCCCccccccCCcccc
Confidence 999999997449999999999988999999988742 34799999999998653 23221
Q ss_pred ----ccccccCCCCCCcc-------cccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 222 ----KHLIQGIGAGVIPP-------VLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 222 ----~~~~~gi~~~~~~~-------~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
.+..+++..+..+. ...++..++++.|+|+|+.++++.|++++|+++||+||+++
T Consensus 288 ~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~l~~~~gi~vEpa~A~al 353 (398)
T TIGR03844 288 NSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKLFEESEGIDILPAAAVAV 353 (398)
T ss_pred ccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhCCccccccHHHHH
Confidence 23445554332221 22456789999999999999999999999999999999874
No 69
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.9e-49 Score=327.96 Aligned_cols=265 Identities=40% Similarity=0.625 Sum_probs=229.5
Q ss_pred HHHhcccCCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 023814 9 KDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (276)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a 88 (276)
+-+...+|+|||++++.|++..|++|+.|.|.+||.||-|||.|.+++..|++.|++-|+.. |++.|+||+|+++|..|
T Consensus 41 ~Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg~-v~EGtaGsTgIslA~v~ 119 (391)
T KOG1481|consen 41 SGVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGGT-VVEGTAGSTGISLAHVA 119 (391)
T ss_pred chhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCce-EEecCCCccchhHHHhh
Confidence 45677899999999999999999999999999999999999999999999999999999955 99999999999999999
Q ss_pred HHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCC-----Ch-hHHHHHHHHHHHhCC--CccccCCCCCCcchHhhh
Q 023814 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAV-----GF-EGFVKKGEEILNRTP--NGYILGQFENPANPEIHY 160 (276)
Q Consensus 89 ~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~-----~~-~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~g~ 160 (276)
+.+|++|+|+||++.+++|.+.++.+||+|+.|++.. .| ..+.+.|.+...+.. ..+|.+||+|+.|+.+||
T Consensus 120 ~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHy 199 (391)
T KOG1481|consen 120 RALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHY 199 (391)
T ss_pred hhcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHh
Confidence 9999999999999999999999999999999987531 12 234444444443331 247789999999999999
Q ss_pred hchHHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCC-cEEEEEecCCCcccc-------------CCC----Ccc
Q 023814 161 ETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPN-IKVYGIEPSESAVLN-------------GGQ----PGK 222 (276)
Q Consensus 161 ~t~~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~-~~vigVe~~~~~~~~-------------~~~----~~~ 222 (276)
.++|+|||.|..+++|.+++.+|||||++|+.+++|+..+. +.++-.+|.++.... .+. ...
T Consensus 200 etTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~d 279 (391)
T KOG1481|consen 200 ETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVD 279 (391)
T ss_pred cCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcc
Confidence 99999999999999999999999999999999999998876 899999999984321 111 134
Q ss_pred cccccCCCCCCccc--ccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccc
Q 023814 223 HLIQGIGAGVIPPV--LDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKY 274 (276)
Q Consensus 223 ~~~~gi~~~~~~~~--~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~ 274 (276)
++.+|||...++.+ +...++|+.+.|+|++++++.+.|...+|+|++.||+.
T Consensus 280 ti~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr~Ll~~dGLFvGsSsa~ 333 (391)
T KOG1481|consen 280 TITEGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSRYLLDNDGLFVGSSSAL 333 (391)
T ss_pred hhhhcccccccccccccchhhhhhheecChHHHHHHHHHhhhcCceEecchhhH
Confidence 56688887666544 45678999999999999999999999999999999985
No 70
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=3.5e-49 Score=353.46 Aligned_cols=262 Identities=21% Similarity=0.202 Sum_probs=212.4
Q ss_pred hHHHhcccCCCcceecccccCCCCceEEEEeCCCCCC--CChhhHHHHHHHHHHHHcCCCCCCCeEEEEeC--CChHHHH
Q 023814 8 KKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPC--SSVKDRIAYSMIKDAEDKGLITPGKTVLIELT--SGNTGIG 83 (276)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~pt--GS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~s--sGN~g~a 83 (276)
.+++...+++|||++++.|++..|.+||+|+|++||+ ||||||++.+++.+++++|. + +||+++ +||||+|
T Consensus 6 ~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~----~-~vvt~g~s~gN~g~a 80 (331)
T PRK03910 6 FPRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGA----D-TLITAGAIQSNHARQ 80 (331)
T ss_pred CCCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCC----C-EEEEcCcchhHHHHH
Confidence 4567889999999999999887888999999999996 59999999999999998885 3 488774 5899999
Q ss_pred HHHHHHHcCCcEEEEecCCCCH--------HHHHHHHHCCCEEEEeCCCCChhH-HHHHHHHHHHhCCCcc-ccCCCCCC
Q 023814 84 LAFIAASRGYKLIIIMPSTYSI--------ERRIILRALGAEVYLADPAVGFEG-FVKKGEEILNRTPNGY-ILGQFENP 153 (276)
Q Consensus 84 ~A~~a~~~g~~~~ivvp~~~~~--------~~~~~~~~~Ga~v~~~~~~~~~~~-~~~~a~~~~~~~~~~~-~~~~~~~~ 153 (276)
+|++|+.+|++|++|||++.+. .|+..|+.+||+|+.++...++.+ +...+.++.++.+..+ ++.++.|+
T Consensus 81 lA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 160 (331)
T PRK03910 81 TAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNA 160 (331)
T ss_pred HHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCc
Confidence 9999999999999999998875 456899999999999986533333 3445666665542233 45677888
Q ss_pred cchHhhhhchHHHHHhhhCC---CcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCccccCCCC---ccccccc
Q 023814 154 ANPEIHYETTGPEIWNDSGG---KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQP---GKHLIQG 227 (276)
Q Consensus 154 ~~~~~g~~t~~~Ei~~q~~~---~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~~~~~---~~~~~~g 227 (276)
.+.+ ||.+++.||++|+++ .||+||+|+||||+++|++++|++.+|+++||||||++++.+..... .....++
T Consensus 161 ~~~~-g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~a~~ 239 (331)
T PRK03910 161 LGAL-GYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKVAKLAQATAEL 239 (331)
T ss_pred hhHH-HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 8885 889999999999963 69999999999999999999999999999999999998865432111 1122334
Q ss_pred CCCC--C--CcccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecC-cccc
Q 023814 228 IGAG--V--IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLC-FKYC 275 (276)
Q Consensus 228 i~~~--~--~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~ps-s~~a 275 (276)
++.+ . ..+.+..+++|+.+.|+|+|+++++++|++++||++||+ ||++
T Consensus 240 ~g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~ep~ysg~~ 292 (331)
T PRK03910 240 LGLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLARTEGILLDPVYTGKA 292 (331)
T ss_pred cCCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCccccccHHHH
Confidence 4432 1 123456788999999999999999999999999999996 7765
No 71
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=3.8e-49 Score=350.73 Aligned_cols=255 Identities=19% Similarity=0.156 Sum_probs=205.1
Q ss_pred ccCCCcceecccccCCCCceEEEEeCCCCCC--CChhhHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChHHHHHHHHHH
Q 023814 14 LIGHTPMVYLNNVVDGCVARIAAKLEMMQPC--SSVKDRIAYSMIKDAEDKGLITPGKTVLIEL--TSGNTGIGLAFIAA 89 (276)
Q Consensus 14 ~~~~TPl~~~~~l~~~~g~~v~~K~E~~~pt--GS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~--ssGN~g~a~A~~a~ 89 (276)
.-.+|||+++++++...|.+||+|+|++||| ||||||++.+++..++++|. +.||++ |+||||+|+|++|+
T Consensus 4 ~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~-----~~vv~~g~ssGN~g~alA~~a~ 78 (311)
T TIGR01275 4 IPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGA-----DTVITVGAIQSNHARATALAAK 78 (311)
T ss_pred CCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHHHHHHHHHH
Confidence 4579999999999888888999999999998 99999999999999999985 348998 66999999999999
Q ss_pred HcCCcEEEEecCCC-CHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHH----hCC-CccccCCCCCCcchHhhhhch
Q 023814 90 SRGYKLIIIMPSTY-SIERRIILRALGAEVYLADPAVGFEGFVKKGEEILN----RTP-NGYILGQFENPANPEIHYETT 163 (276)
Q Consensus 90 ~~g~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~----~~~-~~~~~~~~~~~~~~~~g~~t~ 163 (276)
++|+++++|||++. +..+..+++.+||+|+.+++. ++.+..+.+.++++ +.+ ..+++.++.||.+.+ |+.++
T Consensus 79 ~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-g~~~~ 156 (311)
T TIGR01275 79 KLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAE-EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLGTL-GYVEA 156 (311)
T ss_pred HhCCceEEEecCCccCCCCHHHHHHcCCEEEEECch-hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHHHH-HHHHH
Confidence 99999999999865 456677789999999999852 34455555555443 221 234567788988886 77789
Q ss_pred HHHHHhhhCC--CcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCccccCCC---CcccccccCCCC-CCcccc
Q 023814 164 GPEIWNDSGG--KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQ---PGKHLIQGIGAG-VIPPVL 237 (276)
Q Consensus 164 ~~Ei~~q~~~--~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~~~~---~~~~~~~gi~~~-~~~~~~ 237 (276)
++||++|+++ .||+||+|+|||||++|++.+||+++|+++|||||++.+....... ...+..++++.+ ...+.+
T Consensus 157 ~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 236 (311)
T TIGR01275 157 VLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLEVKASEVIPE 236 (311)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 9999999964 6999999999999999999999999999999999987653211110 112344566543 223445
Q ss_pred cccccCeEEEeCHHHHHHHHHHHHHHcCCeeecC-cccc
Q 023814 238 DVAMLDEVITVSSEEAIETSKLLALKEGLLVRLC-FKYC 275 (276)
Q Consensus 238 ~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~ps-s~~a 275 (276)
..++.+..+.|+|+|+++++++|++++||++||+ ||++
T Consensus 237 ~~~~~~~~~~v~d~e~~~~~~~la~~~gi~vep~~sg~~ 275 (311)
T TIGR01275 237 LDDYSGPGYGKPTSEVAEIVKKVASREGIILDPVYTGKA 275 (311)
T ss_pred ECCcccCcCCCCCHHHHHHHHHHHHHhCCccCcchHHHH
Confidence 5667889999999999999999999999999995 6654
No 72
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=5.5e-48 Score=367.59 Aligned_cols=264 Identities=20% Similarity=0.229 Sum_probs=207.0
Q ss_pred hHHHhcccC-CCcceecccccCC----CC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChH
Q 023814 8 KKDVTELIG-HTPMVYLNNVVDG----CV--ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNT 80 (276)
Q Consensus 8 ~~~i~~~~~-~TPl~~~~~l~~~----~g--~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~ 80 (276)
...+..++| +|||+++++|++. +| .+||+|+|++|||||||+|++.+++..+++.|+ .+.|+++|+|||
T Consensus 316 ~~~~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~----~~~IvetssGNh 391 (695)
T PRK13802 316 ATLNQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGK----TRVIAETGAGQH 391 (695)
T ss_pred HHHHHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCC----CCEEEEECcHHH
Confidence 344567888 9999999998753 44 799999999999999999999999999999997 455889999999
Q ss_pred HHHHHHHHHHcCCcEEEEecCCC---CHHHHHHHHHCCCEEEEeCCC-CChhHHHHHH-HHHHHhCC-CccccCCCCCC-
Q 023814 81 GIGLAFIAASRGYKLIIIMPSTY---SIERRIILRALGAEVYLADPA-VGFEGFVKKG-EEILNRTP-NGYILGQFENP- 153 (276)
Q Consensus 81 g~a~A~~a~~~g~~~~ivvp~~~---~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a-~~~~~~~~-~~~~~~~~~~~- 153 (276)
|+|+|++|+++|++|+||||+.. +..|+.+|+.+||+|+.++.. .+++++.+.+ ++++++.+ ..|+++++.||
T Consensus 392 G~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~ 471 (695)
T PRK13802 392 GVATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPH 471 (695)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCC
Confidence 99999999999999999999853 678999999999999999843 3677876655 55665533 34667777654
Q ss_pred ---cchHhhhhchHHHHHhhhCC-----CcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCccccC--------
Q 023814 154 ---ANPEIHYETTGPEIWNDSGG-----KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNG-------- 217 (276)
Q Consensus 154 ---~~~~~g~~t~~~Ei~~q~~~-----~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~~-------- 217 (276)
.++.+||+++|+||++|+.. .||+||+|||+||+++|++.+|++ .|++|||||||.++....+
T Consensus 472 P~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~ 550 (695)
T PRK13802 472 PFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAP 550 (695)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhhhhh
Confidence 34557999999999999952 699999999999999999999976 6899999999998743221
Q ss_pred --CCC-----------c---------ccccccCCCCCC-cccccccccCeE--EEeCHHHHHHHHHHHHHHcCCeeecCc
Q 023814 218 --GQP-----------G---------KHLIQGIGAGVI-PPVLDVAMLDEV--ITVSSEEAIETSKLLALKEGLLVRLCF 272 (276)
Q Consensus 218 --~~~-----------~---------~~~~~gi~~~~~-~~~~~~~~~d~~--~~v~d~e~~~a~~~l~~~eGi~~~pss 272 (276)
+.+ . .+...||..+.+ |..-....++.+ +.|+|+|+++++++|+++|||+++|+|
T Consensus 551 g~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~~~~l~~~~rv~~~~vtD~eal~a~~~La~~EGIipa~eS 630 (695)
T PRK13802 551 GTGELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEHAWLKDIGRVNYSWATDEEAMNAFKDLCETEGIIPAIES 630 (695)
T ss_pred ccCCccccccceeecccCCCCCccCccccccccCCCCCCchhHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCccccchH
Confidence 110 0 011122221111 211112234544 899999999999999999999999999
Q ss_pred cccC
Q 023814 273 KYCF 276 (276)
Q Consensus 273 ~~al 276 (276)
|+|+
T Consensus 631 ~hAv 634 (695)
T PRK13802 631 SHAV 634 (695)
T ss_pred HHHH
Confidence 9874
No 73
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=5.4e-49 Score=348.86 Aligned_cols=256 Identities=37% Similarity=0.517 Sum_probs=206.1
Q ss_pred HhcccCCCcceecc--cccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 023814 11 VTELIGHTPMVYLN--NVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (276)
Q Consensus 11 i~~~~~~TPl~~~~--~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a 88 (276)
|++++++|||++++ .++...+.+||+|+|++|||||||||++.+++.++++++. .+|+++|+||||.|+|++|
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~-----~~vv~assGN~g~a~A~~a 75 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGG-----RTVVGASSGNHGRALAYAA 75 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTT-----SEEEEESSSHHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccccc-----ceeeeeccCCceehhhhhh
Confidence 57889999999975 4455567899999999999999999999999999998874 4499999999999999999
Q ss_pred HHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhC-----CCccccCCCCCCcchHhhhhch
Q 023814 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRT-----PNGYILGQFENPANPEIHYETT 163 (276)
Q Consensus 89 ~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~ 163 (276)
+.+|++|++|+|+++++.|+++++.+||+|+.++. +++++.+.+.+++++. +....++++ ++.+...||.++
T Consensus 76 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~ 152 (306)
T PF00291_consen 76 ARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPG--DVEGAFDDAQELAKERAELLSPFNGELNQY-NNPNVIAGYATI 152 (306)
T ss_dssp HHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESS--THHHHHHHHHHHHHHHHHHHHHSTTEESTT-TSHHHHHHHHHH
T ss_pred hhccccceeeeccccccccccceeeecceEEEccc--cccccccccccccccccccccccccccCcc-cchhhhhhhhhc
Confidence 99999999999999999999999999999999985 3444555554444321 000115666 444444799999
Q ss_pred HHHHHhhhCCCcCE--EEEecCCCcchHHHHHHHHh--hCCCcEEEEEecCCCcccc----CCCC----cccccccCCCC
Q 023814 164 GPEIWNDSGGKVDA--FIAGIGTGGTVTGAGRFLKE--KNPNIKVYGIEPSESAVLN----GGQP----GKHLIQGIGAG 231 (276)
Q Consensus 164 ~~Ei~~q~~~~~d~--vvvpvG~Gg~~~Gi~~~~~~--~~~~~~vigVe~~~~~~~~----~~~~----~~~~~~gi~~~ 231 (276)
++||++|+. .||. ||+|+|+||+++|++.+++. . |+++||+|++.+++.+. .+.. ..+.+++++.+
T Consensus 153 ~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~ 230 (306)
T PF00291_consen 153 GLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIAGLGVP 230 (306)
T ss_dssp HHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSSTGGTSS
T ss_pred chhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCccccccccccccccccceeeeecccCC
Confidence 999999997 6665 99999999999999999999 7 89999999999987653 2332 12455678766
Q ss_pred C-Cc----ccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 232 V-IP----PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 232 ~-~~----~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
. .+ +.+.++++++++.|+|+|+.+++++|+++|||++||++++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~~a~a~ 280 (306)
T PF00291_consen 231 MPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAEREGILVEPSSAAAL 280 (306)
T ss_dssp SCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHH
T ss_pred ccchhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCcEEcHHHHHHH
Confidence 4 12 234566778889999999999999999999999999999763
No 74
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=1.3e-48 Score=350.45 Aligned_cols=264 Identities=20% Similarity=0.189 Sum_probs=211.2
Q ss_pred chhHHHhcccCCCcceecccccCCCC--ceEEEEeCCCCCC---CChhhHHHHHHHHHHHHcCCCCCCCeEEEEe--CCC
Q 023814 6 EIKKDVTELIGHTPMVYLNNVVDGCV--ARIAAKLEMMQPC---SSVKDRIAYSMIKDAEDKGLITPGKTVLIEL--TSG 78 (276)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~g--~~v~~K~E~~~pt---GS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~--ssG 78 (276)
...+++.+.+++|||+++++++..+| .+||+|+|++||+ ||||||.+.+++.+++++|. .+ |+++ |+|
T Consensus 4 ~~~~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~----~~-vvs~G~s~G 78 (337)
T PRK12390 4 QKFPRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA----DT-LVSIGGVQS 78 (337)
T ss_pred CCCCccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC----CE-EEEeCCCcc
Confidence 34457888999999999999887777 7999999999987 78899999999999999996 44 8887 889
Q ss_pred hHHHHHHHHHHHcCCcEEEEecCCCC--------HHHHHHHHHCCCEEEEeCCCC--ChhHHHHHHHHHHHhCCCccc-c
Q 023814 79 NTGIGLAFIAASRGYKLIIIMPSTYS--------IERRIILRALGAEVYLADPAV--GFEGFVKKGEEILNRTPNGYI-L 147 (276)
Q Consensus 79 N~g~a~A~~a~~~g~~~~ivvp~~~~--------~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~~~~~-~ 147 (276)
|||+|+|++|+++|++|++|++..++ ..|+..++.+||+|+.++... .+.++++.+.+.+++..+..| +
T Consensus 79 N~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (337)
T PRK12390 79 NHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAI 158 (337)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEe
Confidence 99999999999999999999876554 236778999999999998631 234667677777666434334 4
Q ss_pred CCCCC--CcchHhhhhchHHHHHhh---hCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCccccCCCC--
Q 023814 148 GQFEN--PANPEIHYETTGPEIWND---SGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQP-- 220 (276)
Q Consensus 148 ~~~~~--~~~~~~g~~t~~~Ei~~q---~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~~~~~-- 220 (276)
+.+.+ +... .||.++++||++| ++++||+||+|+|||||++|++.+|++..|++||||||+++++.+...+.
T Consensus 159 ~~~~~~~~~~~-~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~~~~ 237 (337)
T PRK12390 159 PAGASDHPLGG-LGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQVLR 237 (337)
T ss_pred CCcCCCCCccc-HHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHH
Confidence 44433 3334 4889999999998 44479999999999999999999999999999999999999876543211
Q ss_pred -cccccccCCCC--CCc--ccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecC-cccc
Q 023814 221 -GKHLIQGIGAG--VIP--PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLC-FKYC 275 (276)
Q Consensus 221 -~~~~~~gi~~~--~~~--~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~ps-s~~a 275 (276)
..+.+++++.+ ..+ +.+..+++|+.+.|+|+|+++++++|++++||++||+ ||.+
T Consensus 238 ~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~ep~ysg~~ 298 (337)
T PRK12390 238 IARNTAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCARLEGMLTDPVYEGKS 298 (337)
T ss_pred HHHHHHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHHhcCccccccHHHHH
Confidence 22333444443 222 2356678999999999999999999999999999997 7765
No 75
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=9.6e-49 Score=347.39 Aligned_cols=253 Identities=23% Similarity=0.231 Sum_probs=202.7
Q ss_pred CcceecccccCCC--CceEEEEeCCCCCC---CChhhHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChHHHHHHHHHHH
Q 023814 18 TPMVYLNNVVDGC--VARIAAKLEMMQPC---SSVKDRIAYSMIKDAEDKGLITPGKTVLIEL--TSGNTGIGLAFIAAS 90 (276)
Q Consensus 18 TPl~~~~~l~~~~--g~~v~~K~E~~~pt---GS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~--ssGN~g~a~A~~a~~ 90 (276)
|||+++++|+..+ +.+||+|+|++||+ ||||||++.+++..++++|. +.||++ |+||||+|+|++|+.
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~-----~~vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA-----DTLVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC-----CEEEECCCchhHHHHHHHHHHHH
Confidence 8999999998877 57999999999998 56799999999999999885 348888 689999999999999
Q ss_pred cCCcEEEEecCCCC--------HHHHHHHHHCCCEEEEeCCCC--ChhHHHHHHHHHHHhC-CCccc-cCCC-CCCcchH
Q 023814 91 RGYKLIIIMPSTYS--------IERRIILRALGAEVYLADPAV--GFEGFVKKGEEILNRT-PNGYI-LGQF-ENPANPE 157 (276)
Q Consensus 91 ~g~~~~ivvp~~~~--------~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~-~~~~~-~~~~-~~~~~~~ 157 (276)
+|++|++|||++.+ ..|+++++.+||+|+.++... ...++.+.+.+..++. +..++ .+++ +||.+.+
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLGGL 155 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCcccHH
Confidence 99999999999876 468999999999999998642 1123333333333333 22344 4555 4999985
Q ss_pred hhhhchHHHHHhhhCC---CcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCccccCCCC---cccccccCC--
Q 023814 158 IHYETTGPEIWNDSGG---KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQP---GKHLIQGIG-- 229 (276)
Q Consensus 158 ~g~~t~~~Ei~~q~~~---~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~~~~~---~~~~~~gi~-- 229 (276)
||.+++.||++|+++ .||+||+|+||||+++|++.+|++.+|++|||+|+|.+++.+..... ....+.+++
T Consensus 156 -G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~ 234 (307)
T cd06449 156 -GYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLE 234 (307)
T ss_pred -HHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999864 69999999999999999999999999999999999999875532111 001222233
Q ss_pred CCCCcccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeec-CccccC
Q 023814 230 AGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRL-CFKYCF 276 (276)
Q Consensus 230 ~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~p-ss~~al 276 (276)
.+..++.++.+++|+.+.|+|+|+++++++|++++||++|| +||+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~~Gi~~ep~ytg~~~ 282 (307)
T cd06449 235 VKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARLEGIITDPVYEGKSM 282 (307)
T ss_pred CCcccEEEecCcccCCCCCCCHHHHHHHHHHHHHhCCccccchHHHHH
Confidence 22345567778899999999999999999999999999999 577653
No 76
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=8.8e-48 Score=345.04 Aligned_cols=263 Identities=21% Similarity=0.188 Sum_probs=211.6
Q ss_pred hhHHHhcccCCCcceecccccCCCCc--eEEEEeCCCCCC---CChhhHHHHHHHHHHHHcCCCCCCCeEEEEe--CCCh
Q 023814 7 IKKDVTELIGHTPMVYLNNVVDGCVA--RIAAKLEMMQPC---SSVKDRIAYSMIKDAEDKGLITPGKTVLIEL--TSGN 79 (276)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~--~v~~K~E~~~pt---GS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~--ssGN 79 (276)
-.+++.+.+++|||++++++++.+|. +||+|+|++||+ ||||||++.+++.+++++|+ . .|+++ |+||
T Consensus 4 ~~~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~----~-~vvs~ggs~gN 78 (337)
T TIGR01274 4 RFPRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGC----T-TLVSIGGIQSN 78 (337)
T ss_pred cCCccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCC----C-EEEECCCCcch
Confidence 35678889999999999999988764 999999999986 78899999999999999996 3 48877 7799
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCC--------HHHHHHHHHCCCEEEEeCCCC--ChhHHHHHHHHHHHhCC-CccccC
Q 023814 80 TGIGLAFIAASRGYKLIIIMPSTYS--------IERRIILRALGAEVYLADPAV--GFEGFVKKGEEILNRTP-NGYILG 148 (276)
Q Consensus 80 ~g~a~A~~a~~~g~~~~ivvp~~~~--------~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~-~~~~~~ 148 (276)
||+|+|++|+++|++|+||||+..+ +.|+.+|+.+||+|+.++... ...+.+..+.+.+++.+ ..|+++
T Consensus 79 ~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~ 158 (337)
T TIGR01274 79 QTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIP 158 (337)
T ss_pred HHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEeC
Confidence 9999999999999999999998653 589999999999999998531 12356666666665552 335555
Q ss_pred CCC--CCcchHhhhhchHHHHHhhh---CCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCccccCCC---C
Q 023814 149 QFE--NPANPEIHYETTGPEIWNDS---GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQ---P 220 (276)
Q Consensus 149 ~~~--~~~~~~~g~~t~~~Ei~~q~---~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~~~~---~ 220 (276)
.+. ++...+ |+.++++||++|+ +.+||+||+|+|+|||++|++++|++..+++||||||+++++.+.... .
T Consensus 159 ~~~~~~~~~~~-G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~~~ 237 (337)
T TIGR01274 159 AGCSDHPLGGL-GFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQILRI 237 (337)
T ss_pred CCCCCCccchh-HHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHH
Confidence 543 455554 8999999999995 347999999999999999999999999999999999999997653221 1
Q ss_pred cccccccCCCCC--Cc--ccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecC-cccc
Q 023814 221 GKHLIQGIGAGV--IP--PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLC-FKYC 275 (276)
Q Consensus 221 ~~~~~~gi~~~~--~~--~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~ps-s~~a 275 (276)
..+.+++++.+. .+ +.+...++|+.+.|+|+|+++++++|+++||+++||+ ||.+
T Consensus 238 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGi~~ep~ytg~~ 297 (337)
T TIGR01274 238 ARNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCAKMEGVLTDPVYEGKS 297 (337)
T ss_pred HHHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHHHhcCCccCcchHHHH
Confidence 223445555432 11 3566778899999999999999999999999999996 6543
No 77
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=3.1e-46 Score=356.03 Aligned_cols=264 Identities=23% Similarity=0.237 Sum_probs=205.5
Q ss_pred hHHHhcccC-CCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 023814 8 KKDVTELIG-HTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (276)
Q Consensus 8 ~~~i~~~~~-~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~ 86 (276)
...+..+++ +|||+++++|++.+|.+||+|+|++|||||||+|.+...+..+++.|+ ++.|+++|+||||+|+|+
T Consensus 261 ~~~~~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~ 336 (610)
T PRK13803 261 KRLLQNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATAT 336 (610)
T ss_pred HHHHHHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCC----CEEEEecChHHHHHHHHH
Confidence 344556665 899999999998888999999999999999999999999998888885 454557899999999999
Q ss_pred HHHHcCCcEEEEecCCC---CHHHHHHHHHCCCEEEEeCCC-CChhHHHHHHHH-HHHhCCCccccCCCC---C--Ccch
Q 023814 87 IAASRGYKLIIIMPSTY---SIERRIILRALGAEVYLADPA-VGFEGFVKKGEE-ILNRTPNGYILGQFE---N--PANP 156 (276)
Q Consensus 87 ~a~~~g~~~~ivvp~~~---~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~-~~~~~~~~~~~~~~~---~--~~~~ 156 (276)
+|+++|++|+||||+.. +..++.+|+.+||+|+.++.. .++.++.+++.+ +..+.++.+|+.+.. + |.++
T Consensus 337 ~aa~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v 416 (610)
T PRK13803 337 ACALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMV 416 (610)
T ss_pred HHHHcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHH
Confidence 99999999999999864 356888999999999999852 456677555544 434444566664432 2 3444
Q ss_pred HhhhhchHHHHHhhhC----CCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCc--------cccCCCCc---
Q 023814 157 EIHYETTGPEIWNDSG----GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA--------VLNGGQPG--- 221 (276)
Q Consensus 157 ~~g~~t~~~Ei~~q~~----~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~--------~~~~~~~~--- 221 (276)
..||+|++.||++|+. ..||+||+|+|+||+++|++.+|++ .|+++||||||.++. ++..+++.
T Consensus 417 ~~~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~ 495 (610)
T PRK13803 417 AYFQSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLH 495 (610)
T ss_pred HHHhhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeec
Confidence 4589999999999984 2599999999999999999999964 789999999999862 23333221
Q ss_pred -----------------ccccccCCCCCC-ccc--ccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 222 -----------------KHLIQGIGAGVI-PPV--LDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 222 -----------------~~~~~gi~~~~~-~~~--~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
.+...|+..+.. |.. +.....++++.|+|+|+++++++|+++|||+++++||+++
T Consensus 496 g~~~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa~al 570 (610)
T PRK13803 496 GSMTYLMQDENGQILEPHSISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKLLAKLEGIIPALESSHAL 570 (610)
T ss_pred cceeeeecccCCcccCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCccCcHHHHHH
Confidence 122334443221 221 2234456899999999999999999999999999999874
No 78
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=2.9e-46 Score=334.02 Aligned_cols=261 Identities=18% Similarity=0.210 Sum_probs=203.5
Q ss_pred hhHHHhcccCCCcceecccccCCCCceEEEEeCCCCCC--CChhhHHHHHHHHHHHHcCCCCCCCeEEE--EeCCChHHH
Q 023814 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPC--SSVKDRIAYSMIKDAEDKGLITPGKTVLI--ELTSGNTGI 82 (276)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~pt--GS~K~R~a~~~~~~a~~~g~~~~~~~~vv--~~ssGN~g~ 82 (276)
-++++.+..++|||++++++++..|.+||+|+|++||+ ||||+|++.+++.++.++|. ++ |+ ++|+||||+
T Consensus 11 ~~~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~----~~-vv~~~~ssGN~g~ 85 (329)
T PRK14045 11 KFPRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA----DV-VITVGAVHSNHAF 85 (329)
T ss_pred cCCCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC----CE-EEEeCccHHHHHH
Confidence 34688999999999999999887789999999999996 89999999999999999886 44 66 579999999
Q ss_pred HHHHHHHHcCCcEEEEecCCCCHH-HHHHHHHCCCEEEEeCCCCC---hhHHHHHHHHHHHhCCCccc-cCCCCCCcchH
Q 023814 83 GLAFIAASRGYKLIIIMPSTYSIE-RRIILRALGAEVYLADPAVG---FEGFVKKGEEILNRTPNGYI-LGQFENPANPE 157 (276)
Q Consensus 83 a~A~~a~~~g~~~~ivvp~~~~~~-~~~~~~~~Ga~v~~~~~~~~---~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 157 (276)
|+|++|+++|++|++|||.+.+.. +...++.+||+++.++...+ ++.+.+.+.++.++.+..|+ ..++.||.+.+
T Consensus 86 alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~~~ 165 (329)
T PRK14045 86 VTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVGTL 165 (329)
T ss_pred HHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhHHH
Confidence 999999999999999999875433 66677899999998874322 23556666666655434454 46667888886
Q ss_pred hhhhchHHHHHhhhC---CCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcc-ccCC----CCcccccccCC
Q 023814 158 IHYETTGPEIWNDSG---GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV-LNGG----QPGKHLIQGIG 229 (276)
Q Consensus 158 ~g~~t~~~Ei~~q~~---~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~-~~~~----~~~~~~~~gi~ 229 (276)
||.+...||++|++ ..+|+||+|+|||||++|++.+++..+|++|||||+|.+... +... ......+.+++
T Consensus 166 -g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~~~~~~~~~~~g~~ 244 (329)
T PRK14045 166 -GYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVKNLVKKTKELLGVK 244 (329)
T ss_pred -HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 66555569999986 369999999999999999999999999999999999976321 2110 00112234454
Q ss_pred CCC-CcccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeec-Ccccc
Q 023814 230 AGV-IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRL-CFKYC 275 (276)
Q Consensus 230 ~~~-~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~p-ss~~a 275 (276)
... .+...+. ..|++..++ +|+++++++|+++|||++|| +||.+
T Consensus 245 ~~~~~~~~~d~-~~~~y~~~~-~e~~~~~~~la~~eGi~ldpvytgk~ 290 (329)
T PRK14045 245 VKVQEPELYDY-SFGEYGKIT-KEVAKLIRSVGTMEGLILDPVYTGKA 290 (329)
T ss_pred CCccceEeccc-ccCCCCCCC-HHHHHHHHHHHHhhCCCCccchHHHH
Confidence 433 2322333 448877777 79999999999999999999 77754
No 79
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-42 Score=309.71 Aligned_cols=257 Identities=24% Similarity=0.234 Sum_probs=219.1
Q ss_pred HHhcccCCCcceecccccCCCCc---eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 023814 10 DVTELIGHTPMVYLNNVVDGCVA---RIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (276)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g~---~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~ 86 (276)
......+.||+++.+++...++. ++|+|.|.+|||||||||++..++..+.+.|. .+|+++||||+|.|+|+
T Consensus 69 ~~~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-----~~I~~ASSGnTgAs~aa 143 (411)
T COG0498 69 AVSLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-----KTILCASSGNTGASAAA 143 (411)
T ss_pred hhhhhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-----CEEEEeCCchHHHHHHH
Confidence 45777899999999888877763 59999999999999999999999999999883 24999999999999999
Q ss_pred HHHHcCCcEEEEecCC-CCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHH
Q 023814 87 IAASRGYKLIIIMPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGP 165 (276)
Q Consensus 87 ~a~~~g~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 165 (276)
++.+.|++|+|++|++ ++..|+.+|..+|++++.+++ +||+|++.+++++++. ++++....-||.+++ ||.|+++
T Consensus 144 ya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G--~fDda~~~vk~~~~~~-~~~~~~nsiNp~rle-gq~t~~f 219 (411)
T COG0498 144 YAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDG--NFDDAQELVKEAANRE-GLLSAVNSINPYRLE-GQKTYAF 219 (411)
T ss_pred HhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcC--cHHHHHHHHHHHHhhC-CceeeccccCHHHhh-hhhhhHh
Confidence 9999999999999998 999999999999999999995 6999999999999865 557776777888886 9999999
Q ss_pred HHHhhhC-CCcCEEEEecCCCcchHHHHHHHHhhCCC------cEEEEEecCCCccccCCC-----CcccccccCCCCCC
Q 023814 166 EIWNDSG-GKVDAFIAGIGTGGTVTGAGRFLKEKNPN------IKVYGIEPSESAVLNGGQ-----PGKHLIQGIGAGVI 233 (276)
Q Consensus 166 Ei~~q~~-~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~------~~vigVe~~~~~~~~~~~-----~~~~~~~gi~~~~~ 233 (276)
||++|++ ..||+|++|+|+||++.|++++|++..|. +++.+|+++++.++.... ...+...+|..+ .
T Consensus 220 e~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~~~~~T~a~am~I~-~ 298 (411)
T COG0498 220 EIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIG-N 298 (411)
T ss_pred HHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhcccccccccccccccccC-C
Confidence 9999997 37999999999999999999999998764 788999999987654321 223344555544 3
Q ss_pred ccccc------ccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 234 PPVLD------VAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 234 ~~~~~------~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
|.++. .+..+.++.|+|+|+++++++++++||+++||+||+++
T Consensus 299 p~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l~~~eG~~~eP~sA~av 347 (411)
T COG0498 299 PSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGILIEPHSAVAV 347 (411)
T ss_pred CCCHHHHHHHHHhcCCceEEeCHHHHHHHHHHHHHhCCcccCccHHHHH
Confidence 44432 22345689999999999999999999999999999864
No 80
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-34 Score=241.94 Aligned_cols=261 Identities=22% Similarity=0.268 Sum_probs=198.8
Q ss_pred HHhcccC-CCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 023814 10 DVTELIG-HTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (276)
Q Consensus 10 ~i~~~~~-~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a 88 (276)
.+..+.| +|||+..++|++.+|.+||+|+|++|+||+||...+.-.+.-|++.|+ ++.|.+...|.||.|.|.+|
T Consensus 48 ~l~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~ 123 (396)
T COG0133 48 LLKDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAA 123 (396)
T ss_pred HHHHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHH
Confidence 3444554 699999999999999999999999999999999999999999999998 67677778899999999999
Q ss_pred HHcCCcEEEEecCCC---CHHHHHHHHHCCCEEEEeC-CCCChhHHHHHHHH-HHHhCCCcccc-----CCCCCCcchHh
Q 023814 89 ASRGYKLIIIMPSTY---SIERRIILRALGAEVYLAD-PAVGFEGFVKKGEE-ILNRTPNGYIL-----GQFENPANPEI 158 (276)
Q Consensus 89 ~~~g~~~~ivvp~~~---~~~~~~~~~~~Ga~v~~~~-~~~~~~~~~~~a~~-~~~~~~~~~~~-----~~~~~~~~~~~ 158 (276)
+++|++|+|||-... +..++.+|+.+||+|+.|. ++.+..++.++|.+ +..+.+..+|+ .|.--|..+..
T Consensus 124 A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRd 203 (396)
T COG0133 124 ALFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRD 203 (396)
T ss_pred HHhCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHH
Confidence 999999999998632 4567889999999999987 44567788877754 55555566664 22223555556
Q ss_pred hhhchHHHHHhhh----CCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCc--------cccCCCCc-----
Q 023814 159 HYETTGPEIWNDS----GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA--------VLNGGQPG----- 221 (276)
Q Consensus 159 g~~t~~~Ei~~q~----~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~--------~~~~~~~~----- 221 (276)
.|+.|+.|..+|+ +.-||+||.|||+|++..|++..|.. .+++++||||+.+.. ++..++++
T Consensus 204 FQ~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~ 282 (396)
T COG0133 204 FQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGM 282 (396)
T ss_pred HHHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC-CCCceEEEeccCcCccCCCccceeecCCCceeeecc
Confidence 8999999988885 33599999999999999999988854 477999999998753 23333321
Q ss_pred ---------------ccccccCCCCC-Cccc--ccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCcccc
Q 023814 222 ---------------KHLIQGIGAGV-IPPV--LDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYC 275 (276)
Q Consensus 222 ---------------~~~~~gi~~~~-~~~~--~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a 275 (276)
-++..||..+. -|.. +...-.-+.+.|+|+|++++.+.|.+.|||+.--.|+.|
T Consensus 283 ~tyllQd~~GQi~e~hSISAGLDYPgVGPeha~l~~~gRa~y~~itD~EAl~af~~L~r~EGIIPALESsHA 354 (396)
T COG0133 283 KTYLLQDEDGQILESHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDEEALEAFQLLSRLEGIIPALESSHA 354 (396)
T ss_pred cceeeEcCCCCEeeeeeeccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcCcchhhhhHHH
Confidence 01112332221 1221 112223478999999999999999999999976666544
No 81
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-32 Score=233.95 Aligned_cols=262 Identities=22% Similarity=0.213 Sum_probs=208.3
Q ss_pred ccchhHHHhcccCCCcceecccccCCCCceEEEEeCCCCC--CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEe--CCCh
Q 023814 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQP--CSSVKDRIAYSMIKDAEDKGLITPGKTVLIEL--TSGN 79 (276)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~v~~K~E~~~p--tGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~--ssGN 79 (276)
+..-++|+....++||+.++++++..+|.+||+||||+.+ .|.+|.|...+++.+|..+|. ++ +|++ ..+|
T Consensus 2 ~l~rf~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~----dT-lvT~GgiQSN 76 (323)
T COG2515 2 NLSRFPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGA----DT-LVTYGGIQSN 76 (323)
T ss_pred CcccCCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCC----cE-EEEecccchh
Confidence 3445678888999999999999999999999999999976 789999999999999999996 44 9988 6799
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCC----CHHHHHHHHHCCCEEEEeCCCCCh--hHHHHHHHHHHHhCCCccccCCC--C
Q 023814 80 TGIGLAFIAASRGYKLIIIMPSTY----SIERRIILRALGAEVYLADPAVGF--EGFVKKGEEILNRTPNGYILGQF--E 151 (276)
Q Consensus 80 ~g~a~A~~a~~~g~~~~ivvp~~~----~~~~~~~~~~~Ga~v~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~--~ 151 (276)
|.+++|++|+++|++|+.++.... -..++.....+|+++..++...++ +...+..++..++.++..|+.|- .
T Consensus 77 h~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~ 156 (323)
T COG2515 77 HVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGS 156 (323)
T ss_pred HHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCc
Confidence 999999999999999999998765 122556667799999999976665 44455555555555555554333 3
Q ss_pred CCcchHhhhhchHHHHHhhhC--CCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCccccCCCC---cccccc
Q 023814 152 NPANPEIHYETTGPEIWNDSG--GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQP---GKHLIQ 226 (276)
Q Consensus 152 ~~~~~~~g~~t~~~Ei~~q~~--~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~~~~~---~~~~~~ 226 (276)
||... .||...+.||.+|.. -++|+|||++|||||.||+..++...+++.+|||+...+.+.....+. ..+.++
T Consensus 157 ~~~g~-lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~ 235 (323)
T COG2515 157 SPLGA-LGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAE 235 (323)
T ss_pred Ccccc-ccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHHHHHHHHHHHHH
Confidence 55544 489999999999986 479999999999999999999999999999999999888764321111 122233
Q ss_pred cCCCC-CCcccccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecC
Q 023814 227 GIGAG-VIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLC 271 (276)
Q Consensus 227 gi~~~-~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~ps 271 (276)
.++.. ...+.++.++....+.++.+|.+++.+.+++.|||..||-
T Consensus 236 ~~~~~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDpV 281 (323)
T COG2515 236 LLGLGSEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDPV 281 (323)
T ss_pred HcCCCCCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCcccccc
Confidence 33333 2334566778888899999999999999999999999983
No 82
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.98 E-value=2.6e-31 Score=226.59 Aligned_cols=265 Identities=21% Similarity=0.225 Sum_probs=203.4
Q ss_pred hhHHHhcccCCCcceecccccCCCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHH
Q 023814 7 IKKDVTELIGHTPMVYLNNVVDGCV--ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGL 84 (276)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g--~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~ 84 (276)
+++.....-++|||++..+|.+.+| ++||+|.|...||||||...|.....+++..|. ...+.+...|.+|.|+
T Consensus 68 v~e~Y~~~gRPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~----~rl~TETGAGQWGsAl 143 (432)
T COG1350 68 VREAYLQIGRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGA----KRLTTETGAGQWGSAL 143 (432)
T ss_pred HHHHHHHhCCCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCc----eeeecccCCchHHHHH
Confidence 3334344447999999999988766 799999999999999999999999999999986 4423344679999999
Q ss_pred HHHHHHcCCcEEEEecCCC---CHHHHHHHHHCCCEEEEeCCCCC----------------hhHHHHHHHHHHHhCCCcc
Q 023814 85 AFIAASRGYKLIIIMPSTY---SIERRIILRALGAEVYLADPAVG----------------FEGFVKKGEEILNRTPNGY 145 (276)
Q Consensus 85 A~~a~~~g~~~~ivvp~~~---~~~~~~~~~~~Ga~v~~~~~~~~----------------~~~~~~~a~~~~~~~~~~~ 145 (276)
+++|+.+|++|+|||-... .+.+..+|+.+||+|+..+...+ .-=++.+|.+.+.++++..
T Consensus 144 slA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~k 223 (432)
T COG1350 144 SLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTK 223 (432)
T ss_pred HHHHHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCce
Confidence 9999999999999998744 45677889999999998764321 1126777888877776666
Q ss_pred ccCCCCCCcchHhhhhchHHHHHhhh---CCCcCEEEEecCCCcchHHHHHHHHhh--C--CCcEEEEEecCCCccccCC
Q 023814 146 ILGQFENPANPEIHYETTGPEIWNDS---GGKVDAFIAGIGTGGTVTGAGRFLKEK--N--PNIKVYGIEPSESAVLNGG 218 (276)
Q Consensus 146 ~~~~~~~~~~~~~g~~t~~~Ei~~q~---~~~~d~vvvpvG~Gg~~~Gi~~~~~~~--~--~~~~vigVe~~~~~~~~~~ 218 (276)
|.....-.+.. .||..+|.|..+|+ +..||++|-|||+|++++|+..-|-.. . ...++|+|+|..|+.+..|
T Consensus 224 Y~lGSVlnhvl-lhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~G 302 (432)
T COG1350 224 YSLGSVLNHVL-LHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTKG 302 (432)
T ss_pred ecchhHHHHHH-HHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCccccc
Confidence 65443222333 59999999996665 556999999999999999998877432 1 2389999999999988765
Q ss_pred CCc-----------ccccccCCCCCCcccccc---cc--------------cCeEEEeCHHHHHHHHHHHHHHcCCeeec
Q 023814 219 QPG-----------KHLIQGIGAGVIPPVLDV---AM--------------LDEVITVSSEEAIETSKLLALKEGLLVRL 270 (276)
Q Consensus 219 ~~~-----------~~~~~gi~~~~~~~~~~~---~~--------------~d~~~~v~d~e~~~a~~~l~~~eGi~~~p 270 (276)
+.. ...+-.||..+.|+.+.. +| +-+.+..+++|++++++.|++.|||+--|
T Consensus 303 eY~YD~gDtagltPllKMyTlGhd~vpPpihAgGLRYHG~aPtls~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiVPAP 382 (432)
T COG1350 303 EYRYDFGDTAGLTPLLKMYTLGHDYVPPPIHAGGLRYHGVAPTLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGIVPAP 382 (432)
T ss_pred eeeccCCchhccchhhhhhccCCCccCCCcccccccccCcChHHHHHHHcCcccceecChHHHHHHHHHHHHhcCCccCC
Confidence 431 113446666666655432 22 22568899999999999999999999999
Q ss_pred CccccC
Q 023814 271 CFKYCF 276 (276)
Q Consensus 271 ss~~al 276 (276)
.|+.|+
T Consensus 383 EsaHAi 388 (432)
T COG1350 383 ESAHAI 388 (432)
T ss_pred cchhhH
Confidence 998763
No 83
>PRK09225 threonine synthase; Validated
Probab=99.98 E-value=3.7e-31 Score=243.85 Aligned_cols=244 Identities=16% Similarity=0.107 Sum_probs=185.1
Q ss_pred CCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHH---HHHHHHHcCCCCCCCeEEEEeCCChHHHHH-HHHHHHcC
Q 023814 17 HTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYS---MIKDAEDKGLITPGKTVLIELTSGNTGIGL-AFIAASRG 92 (276)
Q Consensus 17 ~TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~---~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~-A~~a~~~g 92 (276)
.+||.+++ .++|+.--+++||||||||++.. ++.++.+ +. ...|+++||||+|.|+ |.++.+.|
T Consensus 88 ~~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~g 155 (462)
T PRK09225 88 IAPLVQLD-------DNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPN 155 (462)
T ss_pred ccceEEeC-------CCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCC
Confidence 37887764 26999888999999999999988 7888877 42 3459999999999998 78899999
Q ss_pred CcEEEEecCC-CCHHHHHHHHHC-CCEEEEeCCCCChhHHHHHHHHHHHhC-----CCccccCCCCCCcchHhhhhchHH
Q 023814 93 YKLIIIMPST-YSIERRIILRAL-GAEVYLADPAVGFEGFVKKGEEILNRT-----PNGYILGQFENPANPEIHYETTGP 165 (276)
Q Consensus 93 ~~~~ivvp~~-~~~~~~~~~~~~-Ga~v~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~~~ 165 (276)
++|+|++|++ ++..+..+|..+ |++|+.+.-.++|++|.+.++++..+. -+++-.+. -|+.+++ ||.+.++
T Consensus 156 i~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G~fDD~q~~vk~~~~d~~~~~~~~l~saNS-iN~~Ri~-gQ~~yyf 233 (462)
T PRK09225 156 VRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEGNFDDCQALVKAAFNDEELKEKLKLSSANS-INIGRLL-AQIVYYF 233 (462)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCCCHHHHHHHHHHHhhchhhhhcCceEEEec-cCHHHHH-HHHHHHH
Confidence 9999999996 999999999999 998744333356999999988876552 13444444 3777775 9999999
Q ss_pred HHHhhhCC---CcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCccc----cCCCC-----cccccccCCCCCC
Q 023814 166 EIWNDSGG---KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVL----NGGQP-----GKHLIQGIGAGVI 233 (276)
Q Consensus 166 Ei~~q~~~---~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~----~~~~~-----~~~~~~gi~~~~~ 233 (276)
|+++|+.+ .||+|+||+|+||++.|.+.+.+.-.|-+|+|+++... +.+ ..+.. ..+...+|..+ .
T Consensus 234 ea~~ql~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~n~n-~~l~~~~~~G~y~~~~~~~T~s~amdI~-~ 311 (462)
T PRK09225 234 YAYLQLGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVATNEN-DVLTRFLKTGVYDPRPTVATLSPAMDIS-V 311 (462)
T ss_pred HHHHHhccccCCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEecCC-hHHHHHHHcCCCccCCCCCCcCchhhcC-C
Confidence 99999964 38999999999999999999954445667999997333 232 23322 12333444333 2
Q ss_pred cccccc---------------------cccC---------------eEEEeCHHHHHHHHHHHHHHcCCeeecCccccC
Q 023814 234 PPVLDV---------------------AMLD---------------EVITVSSEEAIETSKLLALKEGLLVRLCFKYCF 276 (276)
Q Consensus 234 ~~~~~~---------------------~~~d---------------~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~al 276 (276)
|.++.+ +.-. ..+.|+|+|+.++++++++++|+++||+||+++
T Consensus 312 psn~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~~~~G~~~dPhtAva~ 390 (462)
T PRK09225 312 SSNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSDEETLATIREVYEEYGYLIDPHTAVAY 390 (462)
T ss_pred CCcHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHHHhCCEEECchHHHHH
Confidence 323221 0001 568899999999999999999999999999874
No 84
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.97 E-value=3.1e-30 Score=237.84 Aligned_cols=244 Identities=14% Similarity=0.058 Sum_probs=184.5
Q ss_pred CcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHH---HHHHHHcCCCCCCCeEEEEeCCChHHHHH-HHHHHHcCC
Q 023814 18 TPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSM---IKDAEDKGLITPGKTVLIELTSGNTGIGL-AFIAASRGY 93 (276)
Q Consensus 18 TPl~~~~~l~~~~g~~v~~K~E~~~ptGS~K~R~a~~~---~~~a~~~g~~~~~~~~vv~~ssGN~g~a~-A~~a~~~g~ 93 (276)
+||.++. .++|++-.+++||||||||++..+ +.++.++.. +...|+++||||+|.|. +.++.+.|+
T Consensus 88 ~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~---~~~~Il~ATSGdTG~Aa~aaf~~~~gi 157 (460)
T cd01560 88 APLVQLG-------DNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRN---ERITILVATSGDTGSAAIEGFRGKPNV 157 (460)
T ss_pred cceEEeC-------CCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcC---CCeEEEEcCCCcHHHHHHHHHhCcCCC
Confidence 7877764 279999999999999999999876 666655410 14559999999999994 888999999
Q ss_pred cEEEEecCC-CCHHHHHHHHHCCC---EEEEeCCCCChhHHHHHHHHHHHhC-----CCccccCCCCCCcchHhhhhchH
Q 023814 94 KLIIIMPST-YSIERRIILRALGA---EVYLADPAVGFEGFVKKGEEILNRT-----PNGYILGQFENPANPEIHYETTG 164 (276)
Q Consensus 94 ~~~ivvp~~-~~~~~~~~~~~~Ga---~v~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~~ 164 (276)
+|+|++|++ +++.+..+|..+|+ +++.+++ +|++|++.++++..+. -+++-.+. -|+.+++ +|.+.+
T Consensus 158 ~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G--~fDd~q~~vk~~~~d~~~~~~~~l~saNS-iN~~Ri~-~Q~~yy 233 (460)
T cd01560 158 DVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEG--DFDDCQSLVKALFADEDFNKKLKLSSANS-INWARIL-AQIVYY 233 (460)
T ss_pred EEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcC--CHHHHHHHHHHHhcChhhHhcceEEEEec-cCHHHHH-HHHHHH
Confidence 999999995 99999999999997 7888874 6999999988876542 13333444 3777775 999999
Q ss_pred HHHHhhhCC----CcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCc---cccCCCC------cccccccCCCC
Q 023814 165 PEIWNDSGG----KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA---VLNGGQP------GKHLIQGIGAG 231 (276)
Q Consensus 165 ~Ei~~q~~~----~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~---~~~~~~~------~~~~~~gi~~~ 231 (276)
+|+++|+.+ .|+.|+||+|+||++.|++.+.+.-.|-.|+|+++....- .+..|.. ..+...+|...
T Consensus 234 f~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n~il~~~~~~G~y~~~~~~~~T~spamdI~ 313 (460)
T cd01560 234 FYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNENDVLRRFFKTGRYDRRESLKQTLSPAMDIL 313 (460)
T ss_pred HHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCChHHHHHHHcCCCcCCCCCCCCcCchhhcC
Confidence 999999963 5899999999999999999997665577899997654431 1122322 12233344332
Q ss_pred CCcccccc---c--cc-------------------------------CeEEEeCHHHHHHHHHHHHHHcCCeeecCcccc
Q 023814 232 VIPPVLDV---A--ML-------------------------------DEVITVSSEEAIETSKLLALKEGLLVRLCFKYC 275 (276)
Q Consensus 232 ~~~~~~~~---~--~~-------------------------------d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a 275 (276)
.|.++.+ . .- -..+.|+|+|+.++++++++++|+++||+||++
T Consensus 314 -~psn~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~~~~~~G~~vdPhtAva 392 (460)
T cd01560 314 -KSSNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIREVYEETGYLIDPHTAVG 392 (460)
T ss_pred -CCCCHHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHHHHHHhcCEEECchHHHH
Confidence 2333211 0 00 156899999999999999999999999999987
Q ss_pred C
Q 023814 276 F 276 (276)
Q Consensus 276 l 276 (276)
+
T Consensus 393 ~ 393 (460)
T cd01560 393 V 393 (460)
T ss_pred H
Confidence 4
No 85
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.96 E-value=5.1e-29 Score=214.31 Aligned_cols=258 Identities=22% Similarity=0.246 Sum_probs=184.5
Q ss_pred cccCCCcceecccccCCC--CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHH
Q 023814 13 ELIGHTPMVYLNNVVDGC--VARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAAS 90 (276)
Q Consensus 13 ~~~~~TPl~~~~~l~~~~--g~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~ 90 (276)
..-++|||++.++|.+.+ |.+||+|+|++||+||||...+...+..+++.|+ +..|.+...|.||.|+|.+|++
T Consensus 118 y~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGk----knviaETGAGQhGvatA~a~a~ 193 (477)
T KOG1395|consen 118 YLGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGK----KNVIAETGAGQHGVATATACAK 193 (477)
T ss_pred HcCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcc----cceeeccCCCccchHHHHHHHH
Confidence 455789999999998754 6899999999999999999999999999999997 6656677889999999999999
Q ss_pred cCCcEEEEecCC---CCHHHHHHHHHCCCEEEEeCCC-CChhHHHHHHHHHH-HhCCCcccc-----CCCCCCcchHhhh
Q 023814 91 RGYKLIIIMPST---YSIERRIILRALGAEVYLADPA-VGFEGFVKKGEEIL-NRTPNGYIL-----GQFENPANPEIHY 160 (276)
Q Consensus 91 ~g~~~~ivvp~~---~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~-~~~~~~~~~-----~~~~~~~~~~~g~ 160 (276)
+|++|+|+|-.. ....++-+|+.+||+|+.+... .+.+++-..+.++. ...+-.+|+ .++--|......+
T Consensus 194 FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fh 273 (477)
T KOG1395|consen 194 FGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFH 273 (477)
T ss_pred hCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHH
Confidence 999999999753 2567888999999999998742 33444444443332 222222332 2222233333467
Q ss_pred hchHHHHHhhh----CCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcc--------ccCCCCc-------
Q 023814 161 ETTGPEIWNDS----GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV--------LNGGQPG------- 221 (276)
Q Consensus 161 ~t~~~Ei~~q~----~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~--------~~~~~~~------- 221 (276)
.+|+.|-..|+ +..||.||.|+|+|++.+|+..-|.. ...+++|||+..+.+. +..+.++
T Consensus 274 svIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~-dk~v~~igveaagdg~dtp~hsatltagd~Gv~hG~~t 352 (477)
T KOG1395|consen 274 SVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIR-DKSVGMIGVEAAGDGVDTPKHSATLTAGDVGVFHGVTT 352 (477)
T ss_pred HHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhc-cchhheeeeeecccccCCcchhceeeccccccccccee
Confidence 88888876664 34599999999999999999988865 3457889998766431 1122211
Q ss_pred ------------ccc-cccCCCCC-Cccc--ccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCcccc
Q 023814 222 ------------KHL-IQGIGAGV-IPPV--LDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYC 275 (276)
Q Consensus 222 ------------~~~-~~gi~~~~-~~~~--~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a 275 (276)
++. -.||..+. -|.. +...-..+++.|+|.|+++..++|.+.|||+.-+.+..|
T Consensus 353 y~lq~~dGqi~~phsIsAGLdYpGvgPels~~k~~grae~isitd~eclegfk~~srlEGIIPAlEssHA 422 (477)
T KOG1395|consen 353 YVLQDTDGQIFDPHSISAGLDYPGVGPELSHLKETGRAEFISITDAECLEGFKQLSRLEGIIPALESSHA 422 (477)
T ss_pred eeeeccCCccccCCccccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcccccCCchhhH
Confidence 111 12332211 1211 112234589999999999999999999999987766544
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.93 E-value=1e-24 Score=184.93 Aligned_cols=259 Identities=19% Similarity=0.211 Sum_probs=208.8
Q ss_pred ccCCCcceeccccc--------CCCCceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHcCCCCCCC----------
Q 023814 14 LIGHTPMVYLNNVV--------DGCVARIAAKLEMMQP-CSSVKDRIAYSMIKD-----AEDKGLITPGK---------- 69 (276)
Q Consensus 14 ~~~~TPl~~~~~l~--------~~~g~~v~~K~E~~~p-tGS~K~R~a~~~~~~-----a~~~g~~~~~~---------- 69 (276)
++-++||+..+... +....++|+|+++.-| +||+|.|+..|-+.. |++.|.+.-.+
T Consensus 75 GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f 154 (443)
T COG3048 75 GIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEF 154 (443)
T ss_pred CeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHH
Confidence 45567888765432 2233589999999999 899999998887643 45666544221
Q ss_pred ------eEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCC
Q 023814 70 ------TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN 143 (276)
Q Consensus 70 ------~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~ 143 (276)
-.|...|+||.|.|+....+.+|+++++-|..+..++|.+++|+.|.+|+... .+|..+.++-++-+++.+.
T Consensus 155 ~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe--~DY~~AVeeGRk~a~~DP~ 232 (443)
T COG3048 155 KDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYE--QDYGVAVEEGRKEAESDPN 232 (443)
T ss_pred HHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEec--chhhHHHHHhhhhhccCCc
Confidence 14677899999999999999999999999999999999999999999999988 4688999999999998888
Q ss_pred ccccCCCCCCcchHhhhhchHHHHHhhhCC--------CcCEEEEecCCCcchHHHHHHHHhhC-CCcEEEEEecCCCcc
Q 023814 144 GYILGQFENPANPEIHYETTGPEIWNDSGG--------KVDAFIAGIGTGGTVTGAGRFLKEKN-PNIKVYGIEPSESAV 214 (276)
Q Consensus 144 ~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~--------~~d~vvvpvG~Gg~~~Gi~~~~~~~~-~~~~vigVe~~~~~~ 214 (276)
.||++.-.+-... .||...+..|..|++. .|-.|..|||.||.-.|++.++|..+ .++.++-+||..+|+
T Consensus 233 c~FiDDE~S~~LF-LGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPthsPc 311 (443)
T COG3048 233 CFFIDDENSRTLF-LGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPC 311 (443)
T ss_pred eEEecccchhhhh-hhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCChH
Confidence 8998775444445 5999999999999742 36789999999999999999999876 569999999999998
Q ss_pred ccCCC---------------CcccccccCCCCCCcc---cccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecCcccc
Q 023814 215 LNGGQ---------------PGKHLIQGIGAGVIPP---VLDVAMLDEVITVSSEEAIETSKLLALKEGLLVRLCFKYC 275 (276)
Q Consensus 215 ~~~~~---------------~~~~~~~gi~~~~~~~---~~~~~~~d~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a 275 (276)
+.-+. ...+.++|++++.... ...++..|.+++|+|+..++...+|++.||+.+|||+-++
T Consensus 312 MlLGv~tGlHe~ISVqdiGidn~TaADGLAVgRpSgfVgr~me~lL~G~~TvdD~~ly~lL~~L~~~e~~rlEPSalAg 390 (443)
T COG3048 312 MLLGVYTGLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRAMERLLDGYYTVDDQTLYDLLGWLAQEEGIRLEPSALAG 390 (443)
T ss_pred HHHhhhhccccceeeEeecccccccccceeecCccchHHHHHHHHhCCcEEechHHHHHHHHHHHHhcCcccCchhhhc
Confidence 64211 1234567777764322 2346789999999999999999999999999999998654
No 87
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=89.48 E-value=2.4 Score=34.20 Aligned_cols=102 Identities=19% Similarity=0.167 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHcCCcE-EEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHh
Q 023814 80 TGIGLAFIAASRGYKL-IIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 158 (276)
Q Consensus 80 ~g~a~A~~a~~~g~~~-~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 158 (276)
-|..+.++++.+|.++ .-+.+.+.-..-+..+...|-+|.+++++ -+...+.+..+.+..++.-.+..++-+... .
T Consensus 12 DG~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~-~ 88 (172)
T PF03808_consen 12 DGMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYHHGYFDE-E 88 (172)
T ss_pred CCHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEecCCCCCh-h
Confidence 3578899999999887 33333333345566777889999999864 233344445555665543332222111111 1
Q ss_pred hhhchHHHHHhhhCCCcCEEEEecCCCcc
Q 023814 159 HYETTGPEIWNDSGGKVDAFIAGIGTGGT 187 (276)
Q Consensus 159 g~~t~~~Ei~~q~~~~~d~vvvpvG~Gg~ 187 (276)
-...+..+| ++ ..||.|+++.|+---
T Consensus 89 ~~~~i~~~I-~~--~~pdiv~vglG~PkQ 114 (172)
T PF03808_consen 89 EEEAIINRI-NA--SGPDIVFVGLGAPKQ 114 (172)
T ss_pred hHHHHHHHH-HH--cCCCEEEEECCCCHH
Confidence 122333233 22 258999999987643
No 88
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=87.40 E-value=5.1 Score=35.97 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=41.0
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 66 ~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
.++.+.+|. ..|..|...+..|+.+|.+++++.+...++.|++.++.+|++.+
T Consensus 171 ~~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 171 WNPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV 223 (355)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence 455664444 56999999999999999986666655456788899999999864
No 89
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=87.36 E-value=7.3 Score=34.90 Aligned_cols=57 Identities=26% Similarity=0.465 Sum_probs=43.6
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEe
Q 023814 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (276)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 121 (276)
...+.+|++.+|...+|.-|......|+++|...++.+. +..|.+.++.+||+.+..
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~---s~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVS---SSEKLELLKELGADHVIN 193 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEec---CHHHHHHHHhcCCCEEEc
Confidence 466778888888888999999999999999984444333 346667999999976654
No 90
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=86.72 E-value=8.2 Score=32.29 Aligned_cols=50 Identities=34% Similarity=0.440 Sum_probs=41.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeC
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 122 (276)
+|+..+|+.|..++.+....+.++++++.+. +....+.++..|++++..+
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d 51 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEAD 51 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeecc
Confidence 5778899999999999988999999999875 4556777888999988655
No 91
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=86.30 E-value=11 Score=33.09 Aligned_cols=58 Identities=24% Similarity=0.284 Sum_probs=43.3
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEe
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 121 (276)
+...+.+|++.+|...+|..|.++...|+.+|.+++++.. +..+.+.++.+|++-+..
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~---s~~~~~~l~~~Ga~~vi~ 194 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAG---SDDKVAWLKELGFDAVFN 194 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 3455677777566667899999999999999998655443 457888889999965443
No 92
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=86.21 E-value=12 Score=33.61 Aligned_cols=57 Identities=19% Similarity=0.284 Sum_probs=40.4
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEe
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 121 (276)
....+.++++.+|... |..|.+++..|+.+|.+++++ +.++.|++.++.+|++.+..
T Consensus 160 ~~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 160 VQAGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAI---DIDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceEec
Confidence 3344667777444444 999999999999999964433 23567888889999975543
No 93
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=85.94 E-value=7.2 Score=33.75 Aligned_cols=52 Identities=23% Similarity=0.300 Sum_probs=38.8
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 65 ~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
..++++ |+....|..|...+..|+.+|.+.++++ +.++.|++..+.+|++.+
T Consensus 118 ~~~g~~-VlV~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~ 169 (280)
T TIGR03366 118 DLKGRR-VLVVGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATAL 169 (280)
T ss_pred CCCCCE-EEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEe
Confidence 346666 4555678999999999999999855555 346678888899998644
No 94
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=85.91 E-value=7.5 Score=34.28 Aligned_cols=86 Identities=26% Similarity=0.319 Sum_probs=61.6
Q ss_pred eEEEEeCCCCC-----CCChhhHHHHHHHHHHHHcCCCCCCCeEEE-EeCCChHHHHHHHHHHHcCCcEEEEecCCCCH-
Q 023814 33 RIAAKLEMMQP-----CSSVKDRIAYSMIKDAEDKGLITPGKTVLI-ELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI- 105 (276)
Q Consensus 33 ~v~~K~E~~~p-----tGS~K~R~a~~~~~~a~~~g~~~~~~~~vv-~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~- 105 (276)
+-++|.++.-| |-+.---.|+-||.+-.+.. +|+. |+ -++.+--|+++--.|+.+|++.+-++.+...-
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~---~GD~-vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ie 199 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLN---KGDS-VIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIE 199 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhcC---CCCe-eeecCcccHHHHHHHHHHHHhCcceEEEeecCccHH
Confidence 57788888655 44555567777888776644 4565 43 33445567778888999999999999876543
Q ss_pred HHHHHHHHCCCEEEEeC
Q 023814 106 ERRIILRALGAEVYLAD 122 (276)
Q Consensus 106 ~~~~~~~~~Ga~v~~~~ 122 (276)
+-.++++.+||+-+..+
T Consensus 200 el~~~Lk~lGA~~ViTe 216 (354)
T KOG0025|consen 200 ELKKQLKSLGATEVITE 216 (354)
T ss_pred HHHHHHHHcCCceEecH
Confidence 44567899999988776
No 95
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=85.41 E-value=5.7 Score=32.02 Aligned_cols=118 Identities=20% Similarity=0.216 Sum_probs=62.1
Q ss_pred HHHHHHHHHHcCCcEEEEecC-CCCHHHHHHHHHCCCEEEEeCCCCChhHHHH-HHHHHHHhCCCccccCCCCCCcchHh
Q 023814 81 GIGLAFIAASRGYKLIIIMPS-TYSIERRIILRALGAEVYLADPAVGFEGFVK-KGEEILNRTPNGYILGQFENPANPEI 158 (276)
Q Consensus 81 g~a~A~~a~~~g~~~~ivvp~-~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~ 158 (276)
|..+.++++.+|.+..--++. +.-..-++.+...+.+|.++++. ++..+ .+..+.+..++...+..++.+...+
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~---~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~- 86 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAK---PEVLEKAAERLRARYPGLKIVGYHHGYFGPE- 86 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCC---HHHHHHHHHHHHHHCCCcEEEEecCCCCChh-
Confidence 578899999999983222222 11233455566678999999864 33333 3445556665543332122222211
Q ss_pred hhhchHHHHHhhhC-CCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEE
Q 023814 159 HYETTGPEIWNDSG-GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGI 207 (276)
Q Consensus 159 g~~t~~~Ei~~q~~-~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigV 207 (276)
. -.+|.+++. ..||.|+++.|+---=. .....+...+..-+++|
T Consensus 87 ~----~~~i~~~I~~~~pdiv~vglG~PkQE~-~~~~~~~~l~~~v~~~v 131 (171)
T cd06533 87 E----EEEIIERINASGADILFVGLGAPKQEL-WIARHKDRLPVPVAIGV 131 (171)
T ss_pred h----HHHHHHHHHHcCCCEEEEECCCCHHHH-HHHHHHHHCCCCEEEEe
Confidence 1 112444432 25999999999755332 22233333444445554
No 96
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=83.92 E-value=18 Score=33.17 Aligned_cols=56 Identities=27% Similarity=0.316 Sum_probs=41.9
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
+...+.++++.+| ...|..|..++..|+.+|.+.+++... .+.|++..+.+|++.+
T Consensus 179 ~~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~d~--~~~r~~~a~~~Ga~~v 234 (393)
T TIGR02819 179 VTAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVGDL--NPARLAQARSFGCETV 234 (393)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEeCC--CHHHHHHHHHcCCeEE
Confidence 3345667777455 677899999999999999987664422 4678888999999843
No 97
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=82.22 E-value=40 Score=32.32 Aligned_cols=52 Identities=21% Similarity=0.220 Sum_probs=41.0
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeC
Q 023814 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (276)
Q Consensus 67 ~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 122 (276)
|+.+ |+....|..|.+.+..|+.+|-.++++ +..+.++++.+.+|++.+.++
T Consensus 164 pg~k-VlViGaG~iGL~Ai~~Ak~lGA~V~a~---D~~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 164 PPAK-VLVIGAGVAGLAAIGAAGSLGAIVRAF---DTRPEVAEQVESMGAEFLELD 215 (509)
T ss_pred CCCE-EEEECCcHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEEec
Confidence 4445 888999999999999999999853332 346788899999999966554
No 98
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=81.46 E-value=19 Score=31.76 Aligned_cols=58 Identities=26% Similarity=0.340 Sum_probs=43.5
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEe
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 121 (276)
+.+.+.+|++.+|...+|-.|.+++..|+.+|.+++++.. +..+.+.++.+|++.+..
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAFN 189 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 4555677777556666799999999999999998665543 457888889999965443
No 99
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=81.22 E-value=14 Score=32.90 Aligned_cols=58 Identities=26% Similarity=0.355 Sum_probs=47.0
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHH-CCCEEEE
Q 023814 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRA-LGAEVYL 120 (276)
Q Consensus 60 ~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~-~Ga~v~~ 120 (276)
++-|..++|.+.+|++.+|-.|.-+--.|+..|.+++-+.- +.+|.+.+.. +|-+...
T Consensus 143 l~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaG---g~eK~~~l~~~lGfD~~i 201 (340)
T COG2130 143 LDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAG---GAEKCDFLTEELGFDAGI 201 (340)
T ss_pred HHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecC---CHHHHHHHHHhcCCceee
Confidence 45666777888889999999999999999999999998876 4588888887 6666543
No 100
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=81.21 E-value=21 Score=29.51 Aligned_cols=66 Identities=24% Similarity=0.168 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHc---CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHH-HCCCEE
Q 023814 49 DRIAYSMIKDAEDK---GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILR-ALGAEV 118 (276)
Q Consensus 49 ~R~a~~~~~~a~~~---g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~-~~Ga~v 118 (276)
-+|..+.+..+.+. +.--.|. +++....||.|..+|......|.+++++ .. +..+++.+. .+|++.
T Consensus 6 g~Gv~~~~~~~~~~~~~~~~l~gk-~v~I~G~G~vG~~~A~~L~~~G~~Vvv~-D~--~~~~~~~~~~~~g~~~ 75 (200)
T cd01075 6 AYGVFLGMKAAAEHLLGTDSLEGK-TVAVQGLGKVGYKLAEHLLEEGAKLIVA-DI--NEEAVARAAELFGATV 75 (200)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCC-EEEEECCCHHHHHHHHHHHHCCCEEEEE-cC--CHHHHHHHHHHcCCEE
Confidence 36777777776655 3222333 4777888999999999999999988743 32 334444433 346553
No 101
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=80.80 E-value=23 Score=31.41 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=42.5
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHH-CCCEEE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRA-LGAEVY 119 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~-~Ga~v~ 119 (276)
+...+++|++.+|...+|..|.+++..|+.+|.++++... +..|.+.++. +|++-+
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~---~~~~~~~~~~~lGa~~v 201 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAG---SDEKVDLLKNKLGFDDA 201 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCcee
Confidence 3455677888677777899999999999999998555443 4577888877 999644
No 102
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=80.70 E-value=9.4 Score=28.54 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeC
Q 023814 81 GIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (276)
Q Consensus 81 g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 122 (276)
|...+..|+.+|.+++++.+ ++.|++.++.+|++.+...
T Consensus 3 G~~a~q~ak~~G~~vi~~~~---~~~k~~~~~~~Ga~~~~~~ 41 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDR---SEEKLELAKELGADHVIDY 41 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTESEEEET
T ss_pred HHHHHHHHHHcCCEEEEEEC---CHHHHHHHHhhcccccccc
Confidence 55666667777744444443 4567777777776665544
No 103
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=80.65 E-value=6.6 Score=34.84 Aligned_cols=51 Identities=24% Similarity=0.206 Sum_probs=40.1
Q ss_pred EEEeCC---ChHHHHHHHHHHHcCCcEEEEecCCC--CHHHHHHHHHCCCEEEEeC
Q 023814 72 LIELTS---GNTGIGLAFIAASRGYKLIIIMPSTY--SIERRIILRALGAEVYLAD 122 (276)
Q Consensus 72 vv~~ss---GN~g~a~A~~a~~~g~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~~~ 122 (276)
|+-... +|.+.|+..+++++|++++++.|+.. ++..++.++..|+++...+
T Consensus 153 va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 153 IALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred EEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 544444 59999999999999999999999864 5555667777898887765
No 104
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=79.03 E-value=26 Score=31.40 Aligned_cols=57 Identities=23% Similarity=0.205 Sum_probs=41.0
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
+.+.+.++++.+|. ..|-.|.+++..|+.+|.+.++.+.. ++.|.+.++.+|++-+.
T Consensus 170 ~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~~--~~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 170 NTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAVDI--DDRKLEWAREFGATHTV 226 (358)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEE
Confidence 44556777775555 56889999999999999974444432 55778888899996443
No 105
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=79.00 E-value=30 Score=30.59 Aligned_cols=57 Identities=30% Similarity=0.424 Sum_probs=39.4
Q ss_pred cCCCCCC--CeEEEEeCCChHHHHHHHHHHHcCC-cEEEEecCCCCHHHHHHHHH-CCCEEEEe
Q 023814 62 KGLITPG--KTVLIELTSGNTGIGLAFIAASRGY-KLIIIMPSTYSIERRIILRA-LGAEVYLA 121 (276)
Q Consensus 62 ~g~~~~~--~~~vv~~ssGN~g~a~A~~a~~~g~-~~~ivvp~~~~~~~~~~~~~-~Ga~v~~~ 121 (276)
.+.+.++ ++.+|...+|..|.++...|+.+|. +++++.+ +..+.+.++. +|++-+..
T Consensus 147 ~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~ 207 (345)
T cd08293 147 KGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAIN 207 (345)
T ss_pred hccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEE
Confidence 3445554 5656666779999999999999998 5555533 4567777765 99975544
No 106
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=78.47 E-value=29 Score=31.29 Aligned_cols=57 Identities=19% Similarity=0.367 Sum_probs=40.7
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
+...+.++++.+|. ..|..|..++..|+.+|.+.++++. .++.|++.++.+|++.+.
T Consensus 185 ~~~~i~~g~~VlV~-G~G~vG~~a~~lak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i 241 (371)
T cd08281 185 NTAGVRPGQSVAVV-GLGGVGLSALLGAVAAGASQVVAVD--LNEDKLALARELGATATV 241 (371)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEc--CCHHHHHHHHHcCCceEe
Confidence 34456677775554 5689999999999999995444443 356788888999996443
No 107
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=78.47 E-value=22 Score=32.77 Aligned_cols=127 Identities=20% Similarity=0.274 Sum_probs=66.3
Q ss_pred EEEeCCC-hHHHHHHHHHHHcCCcEEEEecCCC----C-HHHHHHHHHCCC-EEEEeCCCCChhHHHHHHHHHHHhCCCc
Q 023814 72 LIELTSG-NTGIGLAFIAASRGYKLIIIMPSTY----S-IERRIILRALGA-EVYLADPAVGFEGFVKKGEEILNRTPNG 144 (276)
Q Consensus 72 vv~~ssG-N~g~a~A~~a~~~g~~~~ivvp~~~----~-~~~~~~~~~~Ga-~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 144 (276)
|+.+|.| .+...+.+...+.+++++.|.-+-- . ..-.+....+|| +++.++....|. .+.+....+. +.
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~--~~~i~~aI~a--nA 76 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFA--EDYIFPAIKA--NA 76 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHH--HHTHHHHHHT--T-
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHH--HHHHHHHHHH--HH
Confidence 4556776 5666666767767789888874311 1 223345677999 999998431111 1111222222 33
Q ss_pred cccCCCC---CCcchHhhhhchHHHHHhhhCCCcCEEEEe-cCCCcchHHHHHHHHhhCCCcEEEE
Q 023814 145 YILGQFE---NPANPEIHYETTGPEIWNDSGGKVDAFIAG-IGTGGTVTGAGRFLKEKNPNIKVYG 206 (276)
Q Consensus 145 ~~~~~~~---~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvp-vG~Gg~~~Gi~~~~~~~~~~~~vig 206 (276)
.|-..|- ...++. ...-..|+.++.+ .++|.-. .|-|--..=+-.+++.+.|+.+|++
T Consensus 77 ~Yeg~YpL~tsl~Rpl--Ia~~~v~~A~~~g--a~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 77 LYEGRYPLSTSLARPL--IAKKLVEVAREEG--ADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp -BTTTB--CCCCHHHH--HHHHHHHHHHHHT---SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred HhCCCccccccchHHH--HHHHHHHHHHHcC--CeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 4433331 112222 2233346666663 6888874 5777777777788889999999874
No 108
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=78.11 E-value=25 Score=31.08 Aligned_cols=57 Identities=30% Similarity=0.454 Sum_probs=41.8
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 60 ~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
.+...+.++.+.+|...+|..|.+++..|+.+|.+++++... . +.+.++.+|++.+.
T Consensus 170 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~---~-~~~~~~~~g~~~~~ 226 (350)
T cd08274 170 LERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA---A-KEEAVRALGADTVI 226 (350)
T ss_pred HhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc---h-hhHHHHhcCCeEEE
Confidence 344556777776666677999999999999999996655432 2 66777889997443
No 109
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=78.08 E-value=39 Score=30.06 Aligned_cols=57 Identities=28% Similarity=0.394 Sum_probs=42.2
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
+...+.++.+.+| ...|..|.+++..|+.+|...++.+.. ++.|.+.++.+|++.+.
T Consensus 168 ~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v~ 224 (350)
T cd08256 168 DRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVVL 224 (350)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEEe
Confidence 4455667777455 667999999999999999887666554 45677888889986543
No 110
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=77.99 E-value=31 Score=30.93 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=42.2
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHH-HCCCEEEEe
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILR-ALGAEVYLA 121 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~-~~Ga~v~~~ 121 (276)
+.+.+.+|++.+|...+|..|..+...|+.+|.+++++.. +..|.+.++ .+|++-+.-
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~---~~~k~~~~~~~lGa~~vi~ 210 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAG---SSQKVDLLKNKLGFDEAFN 210 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhcCCCEEEE
Confidence 3455677777667767799999999999999997554432 556777776 799975543
No 111
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=77.89 E-value=25 Score=31.33 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=38.8
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 65 ~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
..++++.+|. .+|..|......|+.+|.+.++++.. ++.|++..+.+|++.+.
T Consensus 167 ~~~g~~VlV~-G~G~vG~~aiqlak~~G~~~Vi~~~~--~~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 167 DLQGKRVFVS-GVGPIGCLIVAAVKTLGAAEIVCADV--SPRSLSLAREMGADKLV 219 (343)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEeC--CHHHHHHHHHcCCcEEe
Confidence 3466674554 56999999999999999865554432 46788888999997554
No 112
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=76.50 E-value=44 Score=29.68 Aligned_cols=58 Identities=28% Similarity=0.372 Sum_probs=40.3
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEe
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 121 (276)
+...+.++.+.+|. ..|..|.+++..|+.+|.+.++++. .+..+.+.++.+|++.+..
T Consensus 166 ~~~~~~~g~~vlI~-g~g~vG~~a~q~a~~~G~~~v~~~~--~~~~~~~~~~~~ga~~~i~ 223 (351)
T cd08233 166 RRSGFKPGDTALVL-GAGPIGLLTILALKAAGASKIIVSE--PSEARRELAEELGATIVLD 223 (351)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEEC
Confidence 34456677674555 4689999999999999995444443 3556777778899875543
No 113
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=76.07 E-value=16 Score=32.44 Aligned_cols=56 Identities=20% Similarity=0.167 Sum_probs=40.1
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
....+.+|++.+|.. .|..|...+..|+.+|.+++++.+ ++.|.+.++.+|++.+.
T Consensus 159 ~~~~~~~g~~VlV~G-~g~iG~~a~~~a~~~G~~vi~~~~---~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 159 LRASLPPGGRLGLYG-FGGSAHLTAQVALAQGATVHVMTR---GAAARRLALALGAASAG 214 (329)
T ss_pred HhcCCCCCCEEEEEc-CCHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHhCCceec
Confidence 345567777745544 588898888899999987444333 45678899999997543
No 114
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=75.87 E-value=64 Score=30.64 Aligned_cols=123 Identities=12% Similarity=0.104 Sum_probs=72.9
Q ss_pred HHHHHHHHcCCcEEEEe-----------cCCCCHHHHHHHHHCCCEEEEeCCC---CCh-hHHHHHHHHHHHhCCCcc--
Q 023814 83 GLAFIAASRGYKLIIIM-----------PSTYSIERRIILRALGAEVYLADPA---VGF-EGFVKKGEEILNRTPNGY-- 145 (276)
Q Consensus 83 a~A~~a~~~g~~~~ivv-----------p~~~~~~~~~~~~~~Ga~v~~~~~~---~~~-~~~~~~a~~~~~~~~~~~-- 145 (276)
-+..+|+.+|+++.+.. |..+....+......|++.+....+ +.| .++.+...+.+++.+..+
T Consensus 261 ~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~ 340 (473)
T TIGR01064 261 KMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAY 340 (473)
T ss_pred HHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccch
Confidence 34667899999988865 3334456677777789998877532 122 355554444443221111
Q ss_pred ---ccCCCC-C---CcchHhhhhchHHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCC
Q 023814 146 ---ILGQFE-N---PANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 212 (276)
Q Consensus 146 ---~~~~~~-~---~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~ 212 (276)
|-.+.. . .... ......+.++.+.+ +.+.||+..-||.++--+++ ..|...|+++.+...
T Consensus 341 ~~~~~~~~~~~~~~~~~~-~~ia~~a~~~a~~~--~akaIVv~T~SG~TA~~vSr----~rp~~PIiAvT~~~~ 407 (473)
T TIGR01064 341 LTNFNDRKNSDPKPSTIT-EAIALSAVEAAEKL--DAKAIVVLTESGRTARLLSK----YRPNAPIIAVTPNER 407 (473)
T ss_pred hhhhhhhhcccccCCChH-HHHHHHHHHHHhhc--CCCEEEEEcCChHHHHHHHh----hCCCCCEEEEcCCHH
Confidence 111100 0 0111 12334445666666 47899999999998765554 479999999987554
No 115
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=75.86 E-value=33 Score=27.63 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=63.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCcccc-CC
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYIL-GQ 149 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 149 (276)
+|..-..|+-|+++|..++.+|++++.+-|...+.. .....+.+. . ++++.. ++. +...+ -|
T Consensus 38 tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~~--~----~l~ell-------~~a-Div~~~~p 100 (178)
T PF02826_consen 38 TVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVEY--V----SLDELL-------AQA-DIVSLHLP 100 (178)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEEE--S----SHHHHH-------HH--SEEEE-SS
T ss_pred EEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hccccccee--e----ehhhhc-------chh-hhhhhhhc
Confidence 377789999999999999999999999887643222 233444421 1 233332 222 22222 22
Q ss_pred CCCCcchHhhhhchHHHHHhhhCCCcCEEEEecCCCcchHH--HHHHHH
Q 023814 150 FENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTG--AGRFLK 196 (276)
Q Consensus 150 ~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~Gg~~~G--i~~~~~ 196 (276)
. ++. -...+..|.+++++ ++.+++-++-|+.+-- +..+++
T Consensus 101 l-t~~----T~~li~~~~l~~mk--~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 101 L-TPE----TRGLINAEFLAKMK--PGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp S-STT----TTTSBSHHHHHTST--TTEEEEESSSGGGB-HHHHHHHHH
T ss_pred c-ccc----cceeeeeeeeeccc--cceEEEeccchhhhhhhHHHHHHh
Confidence 2 222 23467778889984 6999999999998753 344443
No 116
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=75.13 E-value=48 Score=27.75 Aligned_cols=91 Identities=15% Similarity=0.096 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHH
Q 023814 52 AYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFV 131 (276)
Q Consensus 52 a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~ 131 (276)
+..+...+.+.|. ...=|+..|=-..-+....++.+. ++.|=.-.-.+++..++....||+.+..+...
T Consensus 27 a~~~a~Ali~gGi----~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~------ 95 (211)
T COG0800 27 ALPLAKALIEGGI----PAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGLN------ 95 (211)
T ss_pred HHHHHHHHHHcCC----CeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCCC------
Confidence 3445555556664 333456677777888888888888 44443333337788888889999999888531
Q ss_pred HHHHHHHHhCCCccccCCCCCCc
Q 023814 132 KKGEEILNRTPNGYILGQFENPA 154 (276)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~ 154 (276)
.+..+.+.++ +..|++...+|.
T Consensus 96 ~ev~~~a~~~-~ip~~PG~~Tpt 117 (211)
T COG0800 96 PEVAKAANRY-GIPYIPGVATPT 117 (211)
T ss_pred HHHHHHHHhC-CCcccCCCCCHH
Confidence 2333444444 556665544444
No 117
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=74.36 E-value=19 Score=29.43 Aligned_cols=61 Identities=26% Similarity=0.314 Sum_probs=38.6
Q ss_pred EEE-eCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhC
Q 023814 72 LIE-LTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRT 141 (276)
Q Consensus 72 vv~-~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 141 (276)
+++ .|||-+|.++|.++...|..++++.....-+. -.+.+++.+. +.++-.+...+...+.
T Consensus 22 ~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~---sa~em~~~~~~~~~~~ 83 (185)
T PF04127_consen 22 FITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVE---SAEEMLEAVKELLPSA 83 (185)
T ss_dssp EEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-S---SHHHHHHHHHHHGGGG
T ss_pred EecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEec---chhhhhhhhccccCcc
Confidence 444 49999999999999999999999987742111 2577888776 3456666666665544
No 118
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=74.22 E-value=29 Score=28.16 Aligned_cols=98 Identities=15% Similarity=0.158 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcCCcEEEEecC-CCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhh
Q 023814 81 GIGLAFIAASRGYKLIIIMPS-TYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIH 159 (276)
Q Consensus 81 g~a~A~~a~~~g~~~~ivvp~-~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 159 (276)
|..+.++++.+|.+..--++. +.-..-++.....|.+|.++++. -+...+.++.+.++.++.-... ++.+...+ -
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~--~~v~~~~~~~l~~~yP~l~i~g-~~g~f~~~-~ 88 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGK--PDVLQQLKVKLIKEYPKLKIVG-AFGPLEPE-E 88 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCCEEEE-ECCCCChH-H
Confidence 567899999999764222221 11123344556688899999864 2233444555556665433221 11111111 1
Q ss_pred hhchHHHHHhhhC-CCcCEEEEecCCCc
Q 023814 160 YETTGPEIWNDSG-GKVDAFIAGIGTGG 186 (276)
Q Consensus 160 ~~t~~~Ei~~q~~-~~~d~vvvpvG~Gg 186 (276)
-.+|.+++. ..+|.|+|+.|+=-
T Consensus 89 ----~~~i~~~I~~s~~dil~VglG~Pk 112 (177)
T TIGR00696 89 ----RKAALAKIARSGAGIVFVGLGCPK 112 (177)
T ss_pred ----HHHHHHHHHHcCCCEEEEEcCCcH
Confidence 123444442 24899999998643
No 119
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=73.62 E-value=11 Score=30.05 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=36.1
Q ss_pred CChHHHHHHHHHHHcCCcEEEEecCC--CCH--HHH----HHHHHCCCEEEEeC
Q 023814 77 SGNTGIGLAFIAASRGYKLIIIMPST--YSI--ERR----IILRALGAEVYLAD 122 (276)
Q Consensus 77 sGN~g~a~A~~a~~~g~~~~ivvp~~--~~~--~~~----~~~~~~Ga~v~~~~ 122 (276)
.+|.+.|++..++++|+.++++.|+. .+. ..+ +..+..|.++..++
T Consensus 12 ~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 12 HNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp TSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred CChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 47999999999999999999999987 454 223 23445688888884
No 120
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=73.51 E-value=39 Score=29.41 Aligned_cols=56 Identities=29% Similarity=0.340 Sum_probs=39.0
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
+...+.++.+.+|...+|..|.+++..|+.+|.+.+++... ..+.+.++.+|++-+
T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~~ 188 (324)
T cd08292 133 DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRR---DAGVAELRALGIGPV 188 (324)
T ss_pred HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHhcCCCEE
Confidence 33456677775555567899999999999999987666543 345566666787533
No 121
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=73.38 E-value=7.7 Score=30.64 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=33.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCC
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGA 116 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga 116 (276)
|....+||+|.++|...+..|.+++++.++. ...+.++..+-
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~---~~~~~i~~~~~ 43 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE---EQIEEINETRQ 43 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH---HHHHHHHHHTS
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHHhCC
Confidence 6677899999999999999999999998864 55566665433
No 122
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=72.91 E-value=16 Score=27.21 Aligned_cols=85 Identities=21% Similarity=0.290 Sum_probs=48.3
Q ss_pred HHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHHHHhhhCC-CcCEEEEecCCCc
Q 023814 108 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGG-KVDAFIAGIGTGG 186 (276)
Q Consensus 108 ~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~-~~d~vvvpvG~Gg 186 (276)
++..+.+|++|+.++.+ ++.. +++++.+-..+++. .+.+ ...+|.+-.++ .+|++|-++|++.
T Consensus 7 ~q~ak~~G~~vi~~~~~---~~k~----~~~~~~Ga~~~~~~-~~~~--------~~~~i~~~~~~~~~d~vid~~g~~~ 70 (130)
T PF00107_consen 7 IQLAKAMGAKVIATDRS---EEKL----ELAKELGADHVIDY-SDDD--------FVEQIRELTGGRGVDVVIDCVGSGD 70 (130)
T ss_dssp HHHHHHTTSEEEEEESS---HHHH----HHHHHTTESEEEET-TTSS--------HHHHHHHHTTTSSEEEEEESSSSHH
T ss_pred HHHHHHcCCEEEEEECC---HHHH----HHHHhhcccccccc-cccc--------cccccccccccccceEEEEecCcHH
Confidence 56778999999998854 2333 34444421222222 2222 33344444443 5999999999876
Q ss_pred chHHHHHHHHhhCCCcEEEEEecCC
Q 023814 187 TVTGAGRFLKEKNPNIKVYGIEPSE 211 (276)
Q Consensus 187 ~~~Gi~~~~~~~~~~~~vigVe~~~ 211 (276)
++. .+++.+.+.=+++-+-..+
T Consensus 71 ~~~---~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 TLQ---EAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHH---HHHHHEEEEEEEEEESSTS
T ss_pred HHH---HHHHHhccCCEEEEEEccC
Confidence 554 4555555555665554433
No 123
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=72.86 E-value=27 Score=23.79 Aligned_cols=49 Identities=29% Similarity=0.230 Sum_probs=37.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-----H----HHHHHHHHCCCEEEE
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-----I----ERRIILRALGAEVYL 120 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-----~----~~~~~~~~~Ga~v~~ 120 (276)
++.-.+|..|.-+|.+.+.+|.+++++.+.+.. + .-.+.++..|.+++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 677788999999999999999999999875432 1 124467777777765
No 124
>PLN02740 Alcohol dehydrogenase-like
Probab=72.81 E-value=46 Score=30.21 Aligned_cols=57 Identities=23% Similarity=0.262 Sum_probs=40.3
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
+...+.+|++.+|. ..|.-|.+++..|+.+|.+-++.+. .++.|++.++.+|++.+.
T Consensus 192 ~~~~~~~g~~VlV~-G~G~vG~~a~q~ak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 192 NTANVQAGSSVAIF-GLGAVGLAVAEGARARGASKIIGVD--INPEKFEKGKEMGITDFI 248 (381)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCCcEEEEc--CChHHHHHHHHcCCcEEE
Confidence 34556777774444 5799999999999999985334332 245788888899997543
No 125
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=72.78 E-value=18 Score=33.67 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=40.4
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
+...+|++ |+....|.-|+.+|..++.+|.+++++ . .++.+....+.+|+++.
T Consensus 197 ~~~l~Gkt-VvViG~G~IG~~va~~ak~~Ga~ViV~-d--~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 197 DVMIAGKV-AVVAGYGDVGKGCAQSLRGQGARVIVT-E--VDPICALQAAMEGYEVM 249 (413)
T ss_pred CCCCCCCE-EEEECCCHHHHHHHHHHHHCCCEEEEE-E--CChhhHHHHHhcCCEEc
Confidence 44445655 999999999999999999999975553 2 34567777888998654
No 126
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=72.54 E-value=39 Score=26.15 Aligned_cols=55 Identities=31% Similarity=0.330 Sum_probs=39.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCH----HHHHHHHHCCCEEEEeCCC
Q 023814 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI----ERRIILRALGAEVYLADPA 124 (276)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~----~~~~~~~~~Ga~v~~~~~~ 124 (276)
+.+|+..++.-|+++|..-...|-..++++..+.+. ..+..++..|.++..+..+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D 60 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECD 60 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccc
Confidence 347888999999999999888877666666655222 2345567788988877643
No 127
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.00 E-value=23 Score=31.73 Aligned_cols=62 Identities=19% Similarity=0.268 Sum_probs=50.8
Q ss_pred HHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeC
Q 023814 58 DAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (276)
Q Consensus 58 ~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 122 (276)
+|-+.+..++|.+ ++....|.-|...-.+|+.+|-+=++++.- .+.|++..+.+||+++.-.
T Consensus 160 HAcr~~~vk~Gs~-vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~--~~~Rle~Ak~~Ga~~~~~~ 221 (354)
T KOG0024|consen 160 HACRRAGVKKGSK-VLVLGAGPIGLLTGLVAKAMGASDVVITDL--VANRLELAKKFGATVTDPS 221 (354)
T ss_pred hhhhhcCcccCCe-EEEECCcHHHHHHHHHHHHcCCCcEEEeec--CHHHHHHHHHhCCeEEeec
Confidence 4555666777766 888999999999999999999988888764 6788898899999988654
No 128
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=71.80 E-value=37 Score=29.58 Aligned_cols=49 Identities=24% Similarity=0.289 Sum_probs=35.7
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 68 GKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 68 ~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
+++.+|...+|..|.+++..|+.+|.++++... +..+.+.++.+|++-+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v 195 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTG---KADAADYLKKLGAKEV 195 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEec---CHHHHHHHHHcCCCEE
Confidence 446456666799999999999999998655533 3456777788998544
No 129
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=71.66 E-value=48 Score=29.26 Aligned_cols=52 Identities=27% Similarity=0.357 Sum_probs=37.8
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 64 ~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
.+.++.+.+|.. +|..|.+++..|+.+|.+++++.+ +..++..++.+|++-+
T Consensus 160 ~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~ 211 (333)
T cd08296 160 GAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHHY 211 (333)
T ss_pred CCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcEE
Confidence 455666645554 899999999999999998555433 3456777788998543
No 130
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.09 E-value=59 Score=28.78 Aligned_cols=74 Identities=24% Similarity=0.292 Sum_probs=52.8
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCcEEEE-ecCCCCHHHHHHHHHCC-CEEEEeCCCCChhHHHHHHHHHHHhCC
Q 023814 68 GKTVLIELTSGNTGIGLAFIAASRGYKLIII-MPSTYSIERRIILRALG-AEVYLADPAVGFEGFVKKGEEILNRTP 142 (276)
Q Consensus 68 ~~~~vv~~ssGN~g~a~A~~a~~~g~~~~iv-vp~~~~~~~~~~~~~~G-a~v~~~~~~~~~~~~~~~a~~~~~~~~ 142 (276)
|+..+||.+++-.|+++|.--++.|.+.++. +......+..+.++..| ++-+.|+-+ ++++..+.+.++-++.+
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis-~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDIS-DREEIYRLAKKVKKEVG 113 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCC-CHHHHHHHHHHHHHhcC
Confidence 3566788888889999999988888855443 22344566677787777 445566653 57888888888888774
No 131
>PRK14030 glutamate dehydrogenase; Provisional
Probab=70.98 E-value=31 Score=32.44 Aligned_cols=53 Identities=19% Similarity=0.072 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEec
Q 023814 48 KDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (276)
Q Consensus 48 K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp 100 (276)
=-||..+.+..+.+.........+|+....||-|..+|.....+|.+++.+..
T Consensus 207 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD 259 (445)
T PRK14030 207 TGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISG 259 (445)
T ss_pred cHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 45677787776654332333334599999999999999999999999988654
No 132
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.93 E-value=23 Score=31.79 Aligned_cols=61 Identities=28% Similarity=0.401 Sum_probs=44.4
Q ss_pred HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCC
Q 023814 59 AEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (276)
Q Consensus 59 a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 123 (276)
+++.| +.||+..-|..-.| .|.---.+|+.+|++++++-.. +..|.+.++.+||+....-.
T Consensus 174 Lk~~g-~~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~--~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 174 LKRSG-LGPGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTS--SKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred hHHcC-CCCCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCC--chhHHHHHHhcCcceeEEec
Confidence 45556 45887744444555 7776677899999999998543 44677889999999887653
No 133
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=70.91 E-value=50 Score=29.09 Aligned_cols=53 Identities=26% Similarity=0.328 Sum_probs=38.5
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 64 ~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
.+.++.+.+|...++..|.+++..|+.+|.+++++... +.+.+.++.+|++-+
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~v 214 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVG---DEKLELAKELGADAF 214 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHcCCcEE
Confidence 45666675666666779999999999999986665443 466677788887644
No 134
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=70.90 E-value=37 Score=30.51 Aligned_cols=57 Identities=23% Similarity=0.231 Sum_probs=40.0
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
+...+.++++.+|. .+|..|.+++..|+.+|...++++.. +..+++.++.+|++.+.
T Consensus 181 ~~~~~~~g~~VlV~-G~g~vG~~a~q~ak~~G~~~vi~~~~--~~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 181 NVAKVKKGSTVAIF-GLGAVGLAVAEGARIRGASRIIGVDL--NPSKFEQAKKFGVTEFV 237 (369)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEE
Confidence 33456677774554 57999999999999999843343332 35678888999996444
No 135
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=70.87 E-value=48 Score=26.29 Aligned_cols=75 Identities=19% Similarity=0.297 Sum_probs=51.5
Q ss_pred CCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecC---------CCCHHHHHHHHH
Q 023814 43 PCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS---------TYSIERRIILRA 113 (276)
Q Consensus 43 ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~---------~~~~~~~~~~~~ 113 (276)
|.--+-++.....+.+|.+.|- ..-||.+|+|.++.-++-+..- .+++++|.-. ..+++-.+.++.
T Consensus 7 pG~eNT~~tle~a~erA~elgi----k~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGI----KHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCc----ceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHHH
Confidence 4445678888888889988875 4545666788888766554432 3788777632 225666788888
Q ss_pred CCCEEEEeC
Q 023814 114 LGAEVYLAD 122 (276)
Q Consensus 114 ~Ga~v~~~~ 122 (276)
.|++|..-.
T Consensus 82 rGa~v~~~s 90 (186)
T COG1751 82 RGAKVLTQS 90 (186)
T ss_pred cCceeeeeh
Confidence 999987643
No 136
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=70.85 E-value=61 Score=28.57 Aligned_cols=58 Identities=28% Similarity=0.341 Sum_probs=40.3
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 60 ~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
.+...+.++++.+|. ..|..|..++..|+.+|.+-++++. .++.|.+.++.+|++.+.
T Consensus 156 l~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~~~--~~~~~~~~~~~~ga~~~i 213 (339)
T cd08239 156 LRRVGVSGRDTVLVV-GAGPVGLGALMLARALGAEDVIGVD--PSPERLELAKALGADFVI 213 (339)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEE
Confidence 333445677775555 5689999999999999998333332 245777888899996543
No 137
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=70.78 E-value=7.7 Score=35.14 Aligned_cols=54 Identities=22% Similarity=0.200 Sum_probs=41.9
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCC
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (276)
..+..+||..+..+|+.+..++-.-.|++|.-+.......+...|+++++++-+
T Consensus 42 ~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~ 95 (363)
T PF01041_consen 42 YAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDID 95 (363)
T ss_dssp EEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BE
T ss_pred eEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEecc
Confidence 488889999999888888333333788899988889999999999999999843
No 138
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=70.63 E-value=45 Score=29.00 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEe-CCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCC-CEEEEe
Q 023814 50 RIAYSMIKDAEDKGLITPGKTVLIEL-TSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALG-AEVYLA 121 (276)
Q Consensus 50 R~a~~~~~~a~~~g~~~~~~~~vv~~-ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~G-a~v~~~ 121 (276)
+|....+.++.+.|. +. ++.. --=.+..-+-.+|+++|+..+.+++.+++..+++++.... .-|+.+
T Consensus 109 ~Gie~F~~~~~~~Gv----dG-livpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~v 177 (265)
T COG0159 109 YGIEKFLRRAKEAGV----DG-LLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYV 177 (265)
T ss_pred hhHHHHHHHHHHcCC----CE-EEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEE
Confidence 344455566666664 22 3333 2224445566666666777666666666666666666555 444444
No 139
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=69.88 E-value=39 Score=28.46 Aligned_cols=72 Identities=22% Similarity=0.275 Sum_probs=44.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCC-CChhHHHHHHHHHHHh
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA-VGFEGFVKKGEEILNR 140 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 140 (276)
++.+|+..+|.-|.++|......|.+++++-.........+.+...|.++..+..+ .+.++..+...+..++
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEA 81 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 45588889999999999998889998877654322222334555667776654422 2333444444444443
No 140
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=69.64 E-value=35 Score=30.34 Aligned_cols=57 Identities=23% Similarity=0.243 Sum_probs=41.1
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
+...+.++++.+|. ..|..|.+++..|+.+|.+.++.+.. +..+++.++.+|++-+.
T Consensus 154 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i 210 (347)
T PRK10309 154 HLAQGCEGKNVIII-GAGTIGLLAIQCAVALGAKSVTAIDI--NSEKLALAKSLGAMQTF 210 (347)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCceEe
Confidence 34445667775555 57999999999999999986555432 55777888899996443
No 141
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=69.60 E-value=95 Score=28.74 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=36.5
Q ss_pred CCCCCCChhhHHHHHHHHHHHHcCCCCCC-CeEEEEeCCChHHHH--HHHHHHHcCCcEEEEe
Q 023814 40 MMQPCSSVKDRIAYSMIKDAEDKGLITPG-KTVLIELTSGNTGIG--LAFIAASRGYKLIIIM 99 (276)
Q Consensus 40 ~~~ptGS~K~R~a~~~~~~a~~~g~~~~~-~~~vv~~ssGN~g~a--~A~~a~~~g~~~~ivv 99 (276)
+.+|.|..+ .....+.+.+.+|.+..| +..+|+..++..|.| +|.+. ..|..++++.
T Consensus 14 ~~hp~gc~~--~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 14 TAHPVGCEA--NVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred CCCCHHHHH--HHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 456777543 345666777777776433 556777777767777 45555 6788877765
No 142
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=69.31 E-value=34 Score=30.87 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=40.2
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
+...+.++++.+|. .+|..|.+++..|+.+|.+.++.+.. ++.|++.++.+|++.+.
T Consensus 180 ~~~~~~~g~~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~~--~~~~~~~~~~lGa~~~i 236 (368)
T cd08300 180 NTAKVEPGSTVAVF-GLGAVGLAVIQGAKAAGASRIIGIDI--NPDKFELAKKFGATDCV 236 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCEEE
Confidence 34456677775555 56999999999999999953444422 45677888889996443
No 143
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=69.10 E-value=78 Score=27.60 Aligned_cols=55 Identities=24% Similarity=0.204 Sum_probs=39.7
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
.+.+.++.+.+|....|..|.+++..|+.+|++++.+.+ +..+...++.+|++-+
T Consensus 135 ~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~---~~~~~~~~~~~g~~~~ 189 (327)
T PRK10754 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---SAQKAQRAKKAGAWQV 189 (327)
T ss_pred hcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCCEE
Confidence 455667777555557889999999999999998665543 3456667778888533
No 144
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=69.00 E-value=40 Score=30.78 Aligned_cols=56 Identities=29% Similarity=0.355 Sum_probs=41.2
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEe
Q 023814 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (276)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 121 (276)
..+.++.+.+|...+|..|.+++..|+.+|.+.+++. .+..+.+.++.+|++.+.-
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~---~~~~~~~~~~~~g~~~~v~ 240 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVV---SSPEKAEYCRELGAEAVID 240 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEEec
Confidence 3455666756666779999999999999999875543 2456778888899875543
No 145
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=68.85 E-value=44 Score=30.19 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=40.5
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
+...+.++++.+|. ..|..|...+..|+.+|.+.++.+. .++.|++.++.+|++.+.
T Consensus 179 ~~~~~~~g~~VlV~-G~G~iG~~a~q~Ak~~G~~~Vi~~~--~~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 179 NTAKVEEGDTVAVF-GLGGIGLSVIQGARMAKASRIIAID--INPAKFELAKKLGATDCV 235 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHhCCCeEE
Confidence 34556677775555 5699999999999999995344432 256788888899996543
No 146
>PRK08628 short chain dehydrogenase; Provisional
Probab=68.73 E-value=54 Score=27.52 Aligned_cols=55 Identities=22% Similarity=0.170 Sum_probs=39.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 123 (276)
.+.+|+..+|-.|.++|..-...|.+++++..........+.++..|.+++.+..
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQV 62 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEc
Confidence 4558888889999999999888999988776543333334556667877766553
No 147
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=68.38 E-value=73 Score=28.26 Aligned_cols=56 Identities=27% Similarity=0.206 Sum_probs=39.9
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
+...+.++.+.+|. .+|..|.+++..|+.+|.+.++.+.. +..+.+..+.+|++-+
T Consensus 160 ~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~~ 215 (351)
T cd08285 160 ELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGS--RPNRVELAKEYGATDI 215 (351)
T ss_pred HccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCceE
Confidence 44456677775555 57899999999999999975555443 3467778888998543
No 148
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=68.27 E-value=39 Score=29.85 Aligned_cols=51 Identities=29% Similarity=0.364 Sum_probs=37.5
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 67 ~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
++++.+|. ..|..|.++...|+.+|.+.++++ +.+..+.+.++.+|++.+.
T Consensus 163 ~g~~vlV~-~~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~~ 213 (341)
T PRK05396 163 VGEDVLIT-GAGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRAV 213 (341)
T ss_pred CCCeEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEEe
Confidence 55665664 468999999999999999644444 3466788888889996543
No 149
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=68.23 E-value=41 Score=30.28 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=40.2
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
+.+.+.++.+.+|. .+|..|.+++..|+.+|...++++.. ...|++.++.+|++-+
T Consensus 178 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~~~~~ga~~~ 233 (365)
T cd08277 178 NTAKVEPGSTVAVF-GLGAVGLSAIMGAKIAGASRIIGVDI--NEDKFEKAKEFGATDF 233 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCcE
Confidence 44556777775555 57999999999999999854443332 4577888888998644
No 150
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=68.00 E-value=47 Score=28.92 Aligned_cols=51 Identities=25% Similarity=0.308 Sum_probs=38.1
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 67 ~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
++.+.+|...+|..|.+++..|+.+|.+++++.. ++.|.+.++.+|++-+.
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~---~~~~~~~~~~~g~~~~~ 196 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTG---RPEEADYLRSLGASEII 196 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCEEE
Confidence 3456455556799999999999999998665543 45778888899985443
No 151
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=67.90 E-value=40 Score=30.48 Aligned_cols=60 Identities=27% Similarity=0.312 Sum_probs=45.5
Q ss_pred HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeC
Q 023814 59 AEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (276)
Q Consensus 59 a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 122 (276)
++....+.||+. |....-|-.|.....+|+.+|.+++.|-. +..|.+..+.+||+.+...
T Consensus 158 alk~~~~~pG~~-V~I~G~GGlGh~avQ~Aka~ga~Via~~~---~~~K~e~a~~lGAd~~i~~ 217 (339)
T COG1064 158 ALKKANVKPGKW-VAVVGAGGLGHMAVQYAKAMGAEVIAITR---SEEKLELAKKLGADHVINS 217 (339)
T ss_pred ehhhcCCCCCCE-EEEECCcHHHHHHHHHHHHcCCeEEEEeC---ChHHHHHHHHhCCcEEEEc
Confidence 444455778876 77777777777777788999977777744 5688888999999988765
No 152
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=67.73 E-value=45 Score=27.37 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=27.0
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCC-CHHHHHHHHHCCCE-EEEeC
Q 023814 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-SIERRIILRALGAE-VYLAD 122 (276)
Q Consensus 65 ~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~-~~~~~~~~~~~Ga~-v~~~~ 122 (276)
++|++. ++.-..|.-++++-++...-..+++.+=.+.. -....+-++.||.+ +..+.
T Consensus 32 ~~~g~~-l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~ 90 (187)
T COG2242 32 PRPGDR-LWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVE 90 (187)
T ss_pred CCCCCE-EEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 335554 77777776666666662223334444332211 11122334556653 44444
No 153
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=67.72 E-value=78 Score=27.51 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=41.5
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEe
Q 023814 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (276)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 121 (276)
+.+.++.+.+|...+|..|.+++..|+.+|.+.+++.. +..+.+.++.+|++.+..
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~~ 191 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTS---SEEKVDFCKKLAAIILIR 191 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEe
Confidence 55667777566667899999999999999998765433 456677777899864443
No 154
>PRK12743 oxidoreductase; Provisional
Probab=67.63 E-value=40 Score=28.46 Aligned_cols=71 Identities=14% Similarity=0.210 Sum_probs=45.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC--HHHHHHHHHCCCEEEEeCCC-CChhHHHHHHHHHHHh
Q 023814 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADPA-VGFEGFVKKGEEILNR 140 (276)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 140 (276)
+.+|+..+|.-|.++|......|.+++++...+.+ ....+.++.+|.+++.+..+ .+.++..+...++.++
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQR 77 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 45888889999999999999999988776544322 22245566788877765432 2333344444444443
No 155
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=67.34 E-value=89 Score=27.54 Aligned_cols=53 Identities=28% Similarity=0.481 Sum_probs=38.7
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCE
Q 023814 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (276)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 117 (276)
...+.++.+.+| ..+|..|.+++..|+..|.+.++.+.. +..+.+.++.+|++
T Consensus 163 ~~~~~~g~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~ga~ 215 (345)
T cd08287 163 SAGVRPGSTVVV-VGDGAVGLCAVLAAKRLGAERIIAMSR--HEDRQALAREFGAT 215 (345)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHcCCc
Confidence 344556667556 558999999999999999986555544 34567778889985
No 156
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=67.15 E-value=53 Score=28.63 Aligned_cols=56 Identities=27% Similarity=0.385 Sum_probs=40.1
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 60 ~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
.+.+.+.++.+.+|. .+|-.|.+++..|+.+|.+++++. .++.+.+.++.+|+...
T Consensus 148 ~~~~~~~~g~~vlV~-g~g~vg~~~~q~a~~~G~~vi~~~---~~~~~~~~~~~~g~~~~ 203 (319)
T cd08242 148 LEQVPITPGDKVAVL-GDGKLGLLIAQVLALTGPDVVLVG---RHSEKLALARRLGVETV 203 (319)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCcEE
Confidence 345556677775555 578999999999999999954432 23567788888998754
No 157
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=67.09 E-value=75 Score=26.71 Aligned_cols=54 Identities=20% Similarity=0.184 Sum_probs=38.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 123 (276)
++.+|+..+|.-|.++|......|.+++++- ........+.++..+.+++.+..
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~-~~~~~~~~~~~~~~~~~~~~~~~ 64 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGIN-IVEPTETIEQVTALGRRFLSLTA 64 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEec-CcchHHHHHHHHhcCCeEEEEEC
Confidence 4568899999999999999988999877652 22234445666667777765543
No 158
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=66.80 E-value=60 Score=27.35 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=38.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 122 (276)
++.+|+..++.-|.++|......|.+++++-... .+...+.++..|.+++.+.
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~ 61 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-APETQAQVEALGRKFHFIT 61 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-HHHHHHHHHHcCCeEEEEE
Confidence 4558888999999999999889999988764432 2233445666787776554
No 159
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=66.68 E-value=58 Score=27.29 Aligned_cols=55 Identities=15% Similarity=0.057 Sum_probs=39.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCC-CHHHHHHHHHCCCEEEEeCC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-SIERRIILRALGAEVYLADP 123 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~~~~ 123 (276)
.+.+|+..+|..|.+++......|..++++..... .....+.++..|.++..+..
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAM 63 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEEC
Confidence 45688999999999999999999998776655421 12334456667888766553
No 160
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=66.65 E-value=58 Score=27.41 Aligned_cols=72 Identities=24% Similarity=0.208 Sum_probs=43.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCC-CChhHHHHHHHHHHHh
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA-VGFEGFVKKGEEILNR 140 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 140 (276)
++.+|+..+|.-|.++|..-...|.+++++......+...+.+...|.++..+..+ .+.++..+...+..+.
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 88 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEE 88 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45588889999999999998889999888766521122233455567666554432 2233333344444433
No 161
>PRK06139 short chain dehydrogenase; Provisional
Probab=66.57 E-value=40 Score=30.10 Aligned_cols=54 Identities=30% Similarity=0.272 Sum_probs=37.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~ 122 (276)
++.+|+..+|-.|.++|......|.+++++...... ....+.++..|+++..+.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~ 62 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVP 62 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEE
Confidence 455888888999999999999999997776543211 122345667888876554
No 162
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=66.46 E-value=16 Score=35.25 Aligned_cols=54 Identities=22% Similarity=0.272 Sum_probs=41.1
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCC------------------CCHHHHHHHHHCCCEEEEe
Q 023814 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPST------------------YSIERRIILRALGAEVYLA 121 (276)
Q Consensus 67 ~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~------------------~~~~~~~~~~~~Ga~v~~~ 121 (276)
+|++ |+...+|..|.+.|..++++|.++++|=... ....+++.++.+|++++.-
T Consensus 136 ~g~~-V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~ 207 (564)
T PRK12771 136 TGKR-VAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLG 207 (564)
T ss_pred CCCE-EEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 4555 8889999999999999999999987764221 1245677788899987653
No 163
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=66.27 E-value=28 Score=31.64 Aligned_cols=54 Identities=33% Similarity=0.389 Sum_probs=40.6
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 64 ~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
.+.++.+.+|...+|..|.+++..|+.+|.+.+++.+ +..+.+.++.+|++.+.
T Consensus 190 ~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~---s~~~~~~~~~~G~~~~i 243 (393)
T cd08246 190 TVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVS---SEEKAEYCRALGAEGVI 243 (393)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 3556667556556799999999999999999765543 56778888889986443
No 164
>PRK07109 short chain dehydrogenase; Provisional
Probab=65.92 E-value=45 Score=29.78 Aligned_cols=55 Identities=24% Similarity=0.230 Sum_probs=38.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeCC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (276)
++.+|+..+|--|.++|......|.+++++...... ....+.++..|++++.+..
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~ 64 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVA 64 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEe
Confidence 455888889999999999988899988776653211 1224456678888776543
No 165
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=65.87 E-value=99 Score=27.55 Aligned_cols=53 Identities=30% Similarity=0.412 Sum_probs=37.1
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCC-cEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGY-KLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~-~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
+...++.+.+|. .+|..|.+++..|+.+|. +++++. .+..+...++.+|++-+
T Consensus 173 ~~~~~g~~vlI~-g~g~vG~~~~~lak~~G~~~v~~~~---~~~~~~~~~~~~g~~~v 226 (361)
T cd08231 173 GPVGAGDTVVVQ-GAGPLGLYAVAAAKLAGARRVIVID---GSPERLELAREFGADAT 226 (361)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc---CCHHHHHHHHHcCCCeE
Confidence 434466675565 579999999999999999 544442 25567777788898533
No 166
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=64.89 E-value=61 Score=28.65 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=37.6
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 65 ~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
+.++.+.+|. .+|-.|.+++..|+.+|.+.++++ +.++.+.+.++.+|++.+
T Consensus 159 ~~~g~~vlI~-~~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~ 210 (340)
T TIGR00692 159 PISGKSVLVT-GAGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGATYV 210 (340)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCcEE
Confidence 4456665664 468888888889999998855555 346788888888998543
No 167
>PRK08589 short chain dehydrogenase; Validated
Probab=64.68 E-value=52 Score=28.10 Aligned_cols=54 Identities=17% Similarity=0.099 Sum_probs=36.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 122 (276)
++.+|+..+|--|.++|..-...|.+++++-.........+.++..|.++..+.
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYH 60 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEE
Confidence 455888888899999999888889988877554111222445566676665544
No 168
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=64.36 E-value=77 Score=26.34 Aligned_cols=54 Identities=22% Similarity=0.207 Sum_probs=37.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 123 (276)
++.+|+..+|.-|.++|......|..++++.... .....+.++..+.++..+..
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~-~~~~~~~~~~~~~~~~~~~~ 59 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE-PSETQQQVEALGRRFLSLTA 59 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch-HHHHHHHHHhcCCceEEEEC
Confidence 4558888889999999999988999877765432 23334556667776665543
No 169
>PRK08226 short chain dehydrogenase; Provisional
Probab=64.17 E-value=60 Score=27.35 Aligned_cols=54 Identities=26% Similarity=0.146 Sum_probs=36.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 122 (276)
.+.+|+..+|.-|.++|......|.+++++-.........+.+...|.++..+.
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVV 60 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEE
Confidence 455888899999999999988899987766543211222334445576765544
No 170
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=63.58 E-value=1.1e+02 Score=27.34 Aligned_cols=146 Identities=18% Similarity=0.208 Sum_probs=72.5
Q ss_pred HHHHHHHHcCCCCCCCeEEEEe-CCChHHHHHHHHHHHcCCcEEEEecCCC-----------CHHH---H--H-HHHHCC
Q 023814 54 SMIKDAEDKGLITPGKTVLIEL-TSGNTGIGLAFIAASRGYKLIIIMPSTY-----------SIER---R--I-ILRALG 115 (276)
Q Consensus 54 ~~~~~a~~~g~~~~~~~~vv~~-ssGN~g~a~A~~a~~~g~~~~ivvp~~~-----------~~~~---~--~-~~~~~G 115 (276)
..+..+++++. +. |+.. ...+.-......++..|+|++.+-.... .... . + ..+.+|
T Consensus 71 ~~i~~li~~~v----dg-Iiv~~~d~~al~~~l~~a~~~gIpVV~~d~~~~~~~~~~~V~~~~~~~~G~~~~~~l~~~l~ 145 (336)
T PRK15408 71 QLINNFVNQGY----NA-IIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPEQLGSMLVEMAAKQVG 145 (336)
T ss_pred HHHHHHHHcCC----CE-EEEecCCHHHHHHHHHHHHHCCCeEEEeCCCCCCccceEEEecCCHHHHHHHHHHHHHHhcC
Confidence 56667777775 34 4443 3333334444557788999888743210 0111 1 1 122233
Q ss_pred ---CEEEEeCCCCCh---hHHHHHHHHH-HHhCCCccccC-CCCCCcchHhhhhchHHHHHhhhCCCcCEEEEecCCCcc
Q 023814 116 ---AEVYLADPAVGF---EGFVKKGEEI-LNRTPNGYILG-QFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGT 187 (276)
Q Consensus 116 ---a~v~~~~~~~~~---~~~~~~a~~~-~~~~~~~~~~~-~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~Gg~ 187 (276)
.+|..+.+..+. .+..+-..+. .++.++...+. ++.+. ....++ ....++++.- +++|.|+++ +...
T Consensus 146 ~g~gki~il~g~~~~~~~~~r~~g~~~~l~~~~p~~~vv~~~~~~~-d~~~a~-~~~~~lL~~~-pdi~aI~~~--~~~~ 220 (336)
T PRK15408 146 KDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQFGYN-DATKSL-QTAEGILKAY-PDLDAIIAP--DANA 220 (336)
T ss_pred CCCCEEEEEECCCCCccHHHHHHHHHHHHHhhCCCCEEEeecCCCC-cHHHHH-HHHHHHHHHC-CCCcEEEEC--CCcc
Confidence 566655432211 1111222222 23333433332 22222 222233 2444555553 678999987 3444
Q ss_pred hHHHHHHHHhhCC-CcEEEEEec
Q 023814 188 VTGAGRFLKEKNP-NIKVYGIEP 209 (276)
Q Consensus 188 ~~Gi~~~~~~~~~-~~~vigVe~ 209 (276)
+.|+..++++.+. +++|+|.+.
T Consensus 221 ~~Ga~~Al~~~g~~~v~VvG~D~ 243 (336)
T PRK15408 221 LPAAAQAAENLKRDKVAIVGFST 243 (336)
T ss_pred HHHHHHHHHhCCCCCEEEEEeCC
Confidence 5588899988754 678888863
No 171
>PRK08703 short chain dehydrogenase; Provisional
Probab=62.98 E-value=87 Score=25.92 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=25.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEec
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp 100 (276)
.+.+|+..+|..|.++|......|..++++.+
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r 38 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVAR 38 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 45588889999999999988888988666544
No 172
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=62.67 E-value=86 Score=27.45 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=35.6
Q ss_pred eEEEE-eCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeC
Q 023814 70 TVLIE-LTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (276)
Q Consensus 70 ~~vv~-~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 122 (276)
..++. ..+|..|.++...|+.+|.+++++.+ +..|.+.++.+|++-+...
T Consensus 145 ~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i~~ 195 (324)
T cd08291 145 KAVVHTAAASALGRMLVRLCKADGIKVINIVR---RKEQVDLLKKIGAEYVLNS 195 (324)
T ss_pred cEEEEccCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEEC
Confidence 43454 57788998888899999997554433 4577788888999755443
No 173
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=62.65 E-value=4.2 Score=34.13 Aligned_cols=31 Identities=19% Similarity=0.090 Sum_probs=28.7
Q ss_pred EEEeCHHHHHHHHHHHHHHcCCeeecCcccc
Q 023814 245 VITVSSEEAIETSKLLALKEGLLVRLCFKYC 275 (276)
Q Consensus 245 ~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a 275 (276)
...|+++|..+++...++..+.+++|.+|+|
T Consensus 148 se~vS~ee~~~ti~k~yes~~YiLdPHTAVa 178 (266)
T KOG2616|consen 148 SERVSNEETTQTIKKIYESNHYILDPHTAVA 178 (266)
T ss_pred hhhcCcHHHHHHHHHHhccCCeeecCchHHH
Confidence 4678999999999999999999999999986
No 174
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=62.38 E-value=1e+02 Score=26.49 Aligned_cols=55 Identities=27% Similarity=0.364 Sum_probs=39.2
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
+.+.++.+.+|...+|..|.++...|+..|.+++.+.+. ..+.+.++.+|++-+.
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 192 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRS---PERAALLKELGADEVV 192 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEEE
Confidence 345566675666667999999999999999996555443 4566777788885443
No 175
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.21 E-value=65 Score=26.56 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=28.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~ 101 (276)
++.+|+..+|..|.+++......|.+++++...
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 455888899999999999999999998887664
No 176
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=61.92 E-value=60 Score=30.59 Aligned_cols=54 Identities=13% Similarity=-0.047 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecC
Q 023814 48 KDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (276)
Q Consensus 48 K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~ 101 (276)
=-+|..+.+..+.+.........+|+....||-|..+|.....+|.+++.+...
T Consensus 216 TG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~ 269 (454)
T PTZ00079 216 TGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDS 269 (454)
T ss_pred cHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcC
Confidence 346777777776543322222345899999999999999999999888866553
No 177
>PLN02827 Alcohol dehydrogenase-like
Probab=61.90 E-value=76 Score=28.81 Aligned_cols=56 Identities=23% Similarity=0.284 Sum_probs=40.1
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
+...+.++++.+|. ..|--|..++..|+.+|.+.++.+.. ++.|.+.++.+|++-+
T Consensus 187 ~~~~~~~g~~VlV~-G~G~vG~~~iqlak~~G~~~vi~~~~--~~~~~~~a~~lGa~~~ 242 (378)
T PLN02827 187 NVADVSKGSSVVIF-GLGTVGLSVAQGAKLRGASQIIGVDI--NPEKAEKAKTFGVTDF 242 (378)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCcEE
Confidence 34456677774555 56889999999999999875554432 4577888889999644
No 178
>PRK06182 short chain dehydrogenase; Validated
Probab=61.83 E-value=1e+02 Score=26.24 Aligned_cols=68 Identities=19% Similarity=0.185 Sum_probs=44.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHh
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNR 140 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 140 (276)
++.+|+.++|.-|.++|......|.+++++... ..+++.+...+.+++.++-. +.++..+...++.+.
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~~ 71 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDVT-DEASIKAAVDTIIAE 71 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeCC-CHHHHHHHHHHHHHh
Confidence 355888899999999999988899988876553 34555555667777776643 333333333444333
No 179
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=61.70 E-value=1.1e+02 Score=26.58 Aligned_cols=65 Identities=20% Similarity=0.132 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEEe-CCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCE
Q 023814 48 KDRIAYSMIKDAEDKGLITPGKTVLIEL-TSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (276)
Q Consensus 48 K~R~a~~~~~~a~~~g~~~~~~~~vv~~-ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 117 (276)
.-+|....+..+.+.|. .+++.. -.=.....+.-+|+..|++.+-+++.+++..+++.+...+..
T Consensus 100 ~~~G~e~F~~~~~~aGv-----dGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~g 165 (259)
T PF00290_consen 100 FQYGIERFFKEAKEAGV-----DGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASG 165 (259)
T ss_dssp HHH-HHHHHHHHHHHTE-----EEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SS
T ss_pred hccchHHHHHHHHHcCC-----CEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCc
Confidence 44555556666666664 224433 111334455566777777777777777777777776655443
No 180
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=61.24 E-value=65 Score=28.38 Aligned_cols=53 Identities=28% Similarity=0.305 Sum_probs=37.5
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEE
Q 023814 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (276)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v 118 (276)
..+.++.+.+|. ..|..|.+++..|+.+|+..++++ ..+..+...++.+|+.+
T Consensus 163 ~~~~~~~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (344)
T cd08284 163 AQVRPGDTVAVI-GCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEP 215 (344)
T ss_pred cCCccCCEEEEE-CCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeE
Confidence 334566675555 578999999999999998434444 33457777788899864
No 181
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=61.12 E-value=1.1e+02 Score=26.35 Aligned_cols=53 Identities=34% Similarity=0.461 Sum_probs=37.0
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCc-EEEEecCCCCHHHHHHHHHCCCEE
Q 023814 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYK-LIIIMPSTYSIERRIILRALGAEV 118 (276)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~-~~ivvp~~~~~~~~~~~~~~Ga~v 118 (276)
...+.++.+.+|. ..|-.|.+++..|+.+|.+ ++++ .. ...+...++.+|++-
T Consensus 124 ~~~~~~~~~vlI~-g~g~vg~~~~~la~~~g~~~v~~~-~~--~~~~~~~~~~~g~~~ 177 (312)
T cd08269 124 RGWIRAGKTVAVI-GAGFIGLLFLQLAAAAGARRVIAI-DR--RPARLALARELGATE 177 (312)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE-CC--CHHHHHHHHHhCCce
Confidence 4555666675666 4688999999999999998 5443 22 345666778888743
No 182
>PRK05993 short chain dehydrogenase; Provisional
Probab=60.87 E-value=1.1e+02 Score=26.24 Aligned_cols=52 Identities=25% Similarity=0.252 Sum_probs=39.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 123 (276)
++.+|+..+|..|.++|......|.+++++... ..+++.+...|.+++.++-
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~Dl 56 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLDY 56 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEccC
Confidence 455888899999999999988899988777553 3455566667777776664
No 183
>PRK06114 short chain dehydrogenase; Provisional
Probab=60.67 E-value=1e+02 Score=25.89 Aligned_cols=54 Identities=15% Similarity=0.117 Sum_probs=37.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC--HHHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~ 122 (276)
++.+|+..+|--|.++|......|.++++....... ....+.++..|.++..+.
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~ 64 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIA 64 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEE
Confidence 455888888899999999988899988776553321 223445666677766554
No 184
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=60.60 E-value=58 Score=24.12 Aligned_cols=68 Identities=15% Similarity=0.117 Sum_probs=37.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCC-ChhHHHHHHHHHHHhC
Q 023814 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAV-GFEGFVKKGEEILNRT 141 (276)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~~ 141 (276)
..|+...+|++++.+|.+- -..|.+++.|.. ..-.+..-.+|..-+..+... +.++..+.+.+.+.+.
T Consensus 19 ~Ivv~T~sG~ta~~isk~R--P~~pIiavt~~~--~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~a~~~~~~~ 87 (117)
T PF02887_consen 19 AIVVFTESGRTARLISKYR--PKVPIIAVTPNE--SVARQLSLYWGVYPVLIEEFDKDTEELIAEALEYAKER 87 (117)
T ss_dssp EEEEE-SSSHHHHHHHHT---TSSEEEEEESSH--HHHHHGGGSTTEEEEECSSHSHSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCchHHHHHHhhC--CCCeEEEEcCcH--HHHhhhhcccceEEEEeccccccHHHHHHHHHHHHHHc
Confidence 4344446778777766542 346777766652 222222234676766666443 4566667777776665
No 185
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=60.58 E-value=1.1e+02 Score=26.50 Aligned_cols=54 Identities=30% Similarity=0.350 Sum_probs=37.4
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHH-CCCEEE
Q 023814 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRA-LGAEVY 119 (276)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~-~Ga~v~ 119 (276)
+.+.++.+.+|...+|-.|.+++..|+.+|.+++++.+ +..+.+.++. +|++-+
T Consensus 141 ~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~~g~~~~ 195 (329)
T cd05288 141 GKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG---SDEKCRWLVEELGFDAA 195 (329)
T ss_pred cCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhhcCCceE
Confidence 44556666556556789999999999999997655543 3456666666 887533
No 186
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=60.41 E-value=92 Score=27.39 Aligned_cols=54 Identities=39% Similarity=0.506 Sum_probs=41.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHH-HHHHHCCC-E-EEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERR-IILRALGA-E-VYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~-~~~~~~Ga-~-v~~~~ 122 (276)
+..+||..|+--|.++|+.-.+.|.+.++++...-..+++ +.++..|+ + ++...
T Consensus 13 kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~ 69 (282)
T KOG1205|consen 13 KVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQ 69 (282)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEe
Confidence 4558888888899999999999999999999876666666 66666555 3 55544
No 187
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=60.35 E-value=44 Score=32.04 Aligned_cols=49 Identities=20% Similarity=0.201 Sum_probs=39.3
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeC
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 122 (276)
+++....|..|++.+..++.+|..++++-. ...++++.+.+|++.+.++
T Consensus 166 kVlViGaG~iGl~Aa~~ak~lGA~V~v~d~---~~~rle~a~~lGa~~v~v~ 214 (511)
T TIGR00561 166 KVLVIGAGVAGLAAIGAANSLGAIVRAFDT---RPEVKEQVQSMGAEFLELD 214 (511)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCeEEecc
Confidence 377778899999999999999987555432 4457888899999987776
No 188
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=60.32 E-value=66 Score=28.10 Aligned_cols=54 Identities=22% Similarity=0.239 Sum_probs=38.6
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v 118 (276)
+...+.++.+.+| ...|..|.+++..++.+|.+++++.+. ..+.+.++.+|++-
T Consensus 161 ~~~~~~~~~~vlV-~g~g~vg~~~~~la~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 214 (329)
T cd08298 161 KLAGLKPGQRLGL-YGFGASAHLALQIARYQGAEVFAFTRS---GEHQELARELGADW 214 (329)
T ss_pred HhhCCCCCCEEEE-ECCcHHHHHHHHHHHHCCCeEEEEcCC---hHHHHHHHHhCCcE
Confidence 4455667667455 457889999999999999877665544 35667778888853
No 189
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=60.24 E-value=31 Score=28.88 Aligned_cols=48 Identities=23% Similarity=0.222 Sum_probs=31.6
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEecCCCC--HHHHHHHHHCCCEEEEeCC
Q 023814 76 TSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADP 123 (276)
Q Consensus 76 ssGN~g~a~A~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~ 123 (276)
+++.-|.++|....+.|.++++.-..... ....+..+.+|.+++.++-
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~ 53 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDL 53 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCT
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecC
Confidence 45678888888888889888777654322 1123344557888766664
No 190
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=60.14 E-value=1.2e+02 Score=27.21 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=39.6
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
...+.++++.+|. ..|..|..++..|+.+|.+.++.+.. +..|.+.++.+|++.+.
T Consensus 181 ~~~~~~g~~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~--~~~k~~~~~~~g~~~~i 236 (365)
T cd08278 181 VLKPRPGSSIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDI--VDSRLELAKELGATHVI 236 (365)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCcEEe
Confidence 3445666675555 56899999999999999975444433 45677788889986443
No 191
>PRK10083 putative oxidoreductase; Provisional
Probab=60.03 E-value=1.1e+02 Score=26.79 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=40.9
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHH-cCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAAS-RGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 60 ~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~-~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
.+...+.++++.+|.. .|-.|.+++..|+. +|.+.++.+.. +..|.+.++.+|++-+.
T Consensus 153 ~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i 211 (339)
T PRK10083 153 TGRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKESGADWVI 211 (339)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHhCCcEEe
Confidence 3455566777745544 78888888888886 69887666543 56788888899996443
No 192
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=59.82 E-value=1.2e+02 Score=26.43 Aligned_cols=54 Identities=26% Similarity=0.392 Sum_probs=36.6
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCE
Q 023814 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (276)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 117 (276)
.+.+.++.+.+|. .+|..|.+++..|+.+|.++++ +..+.+..+.+.++.+|++
T Consensus 159 ~~~~~~g~~vlI~-g~g~~g~~~~~la~~~G~~v~~-~~~~~~~~~~~~~~~~g~~ 212 (306)
T cd08258 159 RSGIRPGDTVVVF-GPGPIGLLAAQVAKLQGATVVV-VGTEKDEVRLDVAKELGAD 212 (306)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCEEEE-ECCCCCHHHHHHHHHhCCc
Confidence 3445566665664 4688999999999999988543 3223346677777778864
No 193
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=59.62 E-value=45 Score=31.19 Aligned_cols=51 Identities=18% Similarity=0.177 Sum_probs=39.7
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCC-----CHHHHHHHHHCCCEEEEe
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-----SIERRIILRALGAEVYLA 121 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~-----~~~~~~~~~~~Ga~v~~~ 121 (276)
.|+...+||.|.-+|..+.++|.+++++...+. ....++.++..|.+++.-
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~ 329 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFL 329 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEec
Confidence 488899999999999999999999998876531 233445677788887753
No 194
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=59.46 E-value=75 Score=27.76 Aligned_cols=54 Identities=26% Similarity=0.337 Sum_probs=38.4
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
..+.++.+.+|. ..|..|.+++..|+.+|++++++.+ +..+.+.++.+|++.+.
T Consensus 158 ~~~~~~~~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 211 (330)
T cd08245 158 AGPRPGERVAVL-GIGGLGHLAVQYARAMGFETVAITR---SPDKRELARKLGADEVV 211 (330)
T ss_pred hCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHhCCcEEe
Confidence 445666665555 5677999999999999998766544 34667777888876554
No 195
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=59.06 E-value=76 Score=23.96 Aligned_cols=98 Identities=11% Similarity=0.060 Sum_probs=49.1
Q ss_pred HHHHHHHcCCcEEEEecCCCCHHHHHH-HHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhc
Q 023814 84 LAFIAASRGYKLIIIMPSTYSIERRII-LRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (276)
Q Consensus 84 ~A~~a~~~g~~~~ivvp~~~~~~~~~~-~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (276)
++...+..+.+..|+............ ....+.+++.=.+ .++.+++..+.+.+.+.-....+...|-|.... -+-.
T Consensus 2 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~g-~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~-~~l~ 79 (122)
T PF09837_consen 2 LAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQG-GDLGERMANAFQQAARGYEPVVLIGSDCPDLTP-DDLE 79 (122)
T ss_dssp ------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE--S-SSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--H-HHHH
T ss_pred ccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecCC-CCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCH-HHHH
Confidence 345566678888888765444443333 4556666665433 578888888877773332344555666666553 2222
Q ss_pred hHHHHHhhhCCCcCEEEEecCCCcc
Q 023814 163 TGPEIWNDSGGKVDAFIAGIGTGGT 187 (276)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvpvG~Gg~ 187 (276)
+.++.+ ...|.|+.|+-=||-
T Consensus 80 ---~A~~~L-~~~d~VlgPa~DGGy 100 (122)
T PF09837_consen 80 ---QAFEAL-QRHDVVLGPAEDGGY 100 (122)
T ss_dssp ---HHHHHT-TT-SEEEEEBTTSSE
T ss_pred ---HHHHHh-ccCCEEEeeccCCCE
Confidence 334445 245999999987773
No 196
>PLN02527 aspartate carbamoyltransferase
Probab=59.01 E-value=29 Score=30.83 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHHc-CCcEEEEecCCC--CHHHHHHHHHCCCEEEEeC
Q 023814 78 GNTGIGLAFIAASR-GYKLIIIMPSTY--SIERRIILRALGAEVYLAD 122 (276)
Q Consensus 78 GN~g~a~A~~a~~~-g~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~~~ 122 (276)
+|.+.|++.+++++ |+.++++.|+.- ++...+.++..|.++..++
T Consensus 163 ~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 163 GRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred ChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 46889999887776 899999999864 4445555666777776664
No 197
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=58.93 E-value=1.1e+02 Score=26.31 Aligned_cols=53 Identities=28% Similarity=0.316 Sum_probs=37.1
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCE
Q 023814 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (276)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 117 (276)
.+.+.++.+.+|...+|..|.+++..|+.+|.+.+++... ..+.+.++.+|++
T Consensus 133 ~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 185 (323)
T cd05282 133 YLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRR---DEQVEELKALGAD 185 (323)
T ss_pred hccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---hHHHHHHHhcCCC
Confidence 3445566665555567889999999999999987665443 2456666778874
No 198
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=58.66 E-value=83 Score=26.61 Aligned_cols=55 Identities=22% Similarity=0.056 Sum_probs=36.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeCC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (276)
++.+|+..+|..|.++|......|.+++++-..... ....+.++..|.+++.+..
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVC 66 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 456888899999999999988899987766332111 1223345566777765543
No 199
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=58.53 E-value=89 Score=26.60 Aligned_cols=55 Identities=22% Similarity=0.166 Sum_probs=37.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCC-CHHHHHHHHHCCCEEEEeCC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-SIERRIILRALGAEVYLADP 123 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~~~~ 123 (276)
++.+|+..+|..|.++|......|..++++..... .+...+.++..|.++..+..
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 66 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKA 66 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 45588888999999999998889998777655321 12223445566777765543
No 200
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=58.50 E-value=58 Score=27.39 Aligned_cols=55 Identities=31% Similarity=0.368 Sum_probs=37.4
Q ss_pred HHHcCCCCCCCeEEEEe-CCC---hHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCC
Q 023814 59 AEDKGLITPGKTVLIEL-TSG---NTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGA 116 (276)
Q Consensus 59 a~~~g~~~~~~~~vv~~-ssG---N~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga 116 (276)
|+..|.. .+.+|++ |.| .+.++||.||++-|=..+.++|+..+ ..-.+.|..+|.
T Consensus 35 AlAAG~n---AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 35 ALAAGWN---AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred HHhcccc---ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence 4566652 2335555 555 36899999999999999999998654 344555655664
No 201
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=58.38 E-value=1.1e+02 Score=28.23 Aligned_cols=51 Identities=12% Similarity=0.022 Sum_probs=32.8
Q ss_pred EEEEeCCChHHHHHHHHHHH-cCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCC
Q 023814 71 VLIELTSGNTGIGLAFIAAS-RGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~-~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 123 (276)
.|+..+++..+..++..+-. -| + .|+++.-+-..-...++.+|++++.++-
T Consensus 143 ~Iiit~G~~~al~~~~~~l~~pg-d-~Vlv~~P~y~~~~~~~~~~g~~~~~v~~ 194 (431)
T PRK15481 143 EIDLTSGAIDAIERLLCAHLLPG-D-SVAVEDPCFLSSINMLRYAGFSASPVSV 194 (431)
T ss_pred eEEEecCcHHHHHHHHHHhCCCC-C-EEEEeCCCcHHHHHHHHHcCCeEEeecc
Confidence 37777777887776655432 23 2 3444543444556778889999999864
No 202
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=58.19 E-value=58 Score=27.32 Aligned_cols=52 Identities=21% Similarity=0.074 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecC
Q 023814 50 RIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (276)
Q Consensus 50 R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~ 101 (276)
||..+.+..+.+.-.......+++....||-|+.+|......|.+.+.+...
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~ 55 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDP 55 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 5666666665443212222345999999999999999999999888888764
No 203
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=57.70 E-value=1.2e+02 Score=26.54 Aligned_cols=57 Identities=19% Similarity=0.199 Sum_probs=39.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHH-cCCcEEEEecCCCCHHHHHHHHHCCCEEEEe
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAAS-RGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~-~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 121 (276)
+...+.++.+.+|.. .|-.|.+++..|+. +|.+++++.+ ++.+.+.++.+|++.+..
T Consensus 156 ~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~~ 213 (338)
T PRK09422 156 KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDI---NDDKLALAKEVGADLTIN 213 (338)
T ss_pred HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC---ChHHHHHHHHcCCcEEec
Confidence 344566777756665 68899998888997 4987655533 446777788899865533
No 204
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=57.61 E-value=1.1e+02 Score=25.54 Aligned_cols=110 Identities=14% Similarity=0.143 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCH---HHHHHHHHCCC-EEEEeCCCCChh
Q 023814 53 YSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI---ERRIILRALGA-EVYLADPAVGFE 128 (276)
Q Consensus 53 ~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~---~~~~~~~~~Ga-~v~~~~~~~~~~ 128 (276)
-+++..+.+.=.+.|+.+ |.+-.+| .|...|..|+..| .|+.-+..+. .=.+.++.+|- +|+..-+++.
T Consensus 58 P~~vA~m~~~L~~~~g~~-VLEIGtG-sGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~-- 130 (209)
T COG2518 58 PHMVARMLQLLELKPGDR-VLEIGTG-SGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGS-- 130 (209)
T ss_pred cHHHHHHHHHhCCCCCCe-EEEECCC-chHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcc--
Confidence 344444444444666666 8877665 4666677777777 4443333222 11233667777 5555543321
Q ss_pred HHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHHHHhhhCCCcCEEEEecCC
Q 023814 129 GFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 184 (276)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~ 184 (276)
.|+--..|||--... ++..++=.-+++|+. .--.+|+|+|+
T Consensus 131 -------------~G~~~~aPyD~I~Vt-aaa~~vP~~Ll~QL~-~gGrlv~PvG~ 171 (209)
T COG2518 131 -------------KGWPEEAPYDRIIVT-AAAPEVPEALLDQLK-PGGRLVIPVGS 171 (209)
T ss_pred -------------cCCCCCCCcCEEEEe-eccCCCCHHHHHhcc-cCCEEEEEEcc
Confidence 132223455432222 344444456788984 23678899984
No 205
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=57.59 E-value=1.2e+02 Score=25.72 Aligned_cols=54 Identities=22% Similarity=0.373 Sum_probs=39.7
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 117 (276)
+.+.+.++.+.+|...+|..|.+++..++.+|++.+.+.+. ..+.+.++.+|++
T Consensus 114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 167 (303)
T cd08251 114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASS---DDKLEYLKQLGVP 167 (303)
T ss_pred HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCC---HHHHHHHHHcCCC
Confidence 35567777775565678889999999999999986665443 3566677788875
No 206
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=57.43 E-value=48 Score=30.15 Aligned_cols=52 Identities=29% Similarity=0.322 Sum_probs=35.5
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 66 ~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
.++++ |+....|..|..++..|+.+|.+++++.+. +..+.+.++.+|++.+.
T Consensus 177 ~~g~~-VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~~i 228 (375)
T PLN02178 177 ESGKR-LGVNGLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADSFL 228 (375)
T ss_pred CCCCE-EEEEcccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcEEE
Confidence 35666 444556899999999999999975554332 33446667789997443
No 207
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=57.35 E-value=1.1e+02 Score=25.18 Aligned_cols=55 Identities=22% Similarity=0.201 Sum_probs=38.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC--HHHHHHHHHCCCEEEEeCC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADP 123 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~ 123 (276)
.+.+|+..+|..|.+++......|..++++.....+ ....+.++..+.++..+..
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQG 62 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEc
Confidence 355888899999999999988889987666654322 1223345556777776653
No 208
>PRK12937 short chain dehydrogenase; Provisional
Probab=57.35 E-value=1.1e+02 Score=25.26 Aligned_cols=55 Identities=16% Similarity=0.191 Sum_probs=39.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC--HHHHHHHHHCCCEEEEeCC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADP 123 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~ 123 (276)
.+.+|+..+|..|.++|..-...|.+++++.....+ ....+.++.++.++..+..
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQA 62 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 455888899999999999988899988776544321 1233456667888777653
No 209
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=57.28 E-value=76 Score=28.55 Aligned_cols=55 Identities=31% Similarity=0.402 Sum_probs=35.9
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
+.+.++++ |+....|.-|..++..|+.+|.+++++... +..+.+..+.+|++-+.
T Consensus 179 ~~~~~g~~-VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~--~~~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 179 GMTEPGKH-LGVAGLGGLGHVAVKIGKAFGLKVTVISSS--SNKEDEAINRLGADSFL 233 (360)
T ss_pred cccCCCCE-EEEECCCHHHHHHHHHHHHCCCEEEEEeCC--cchhhhHHHhCCCcEEE
Confidence 33456666 444667899999999999999875554332 22334555678986443
No 210
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=57.18 E-value=62 Score=27.96 Aligned_cols=52 Identities=13% Similarity=-0.056 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEec
Q 023814 49 DRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (276)
Q Consensus 49 ~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp 100 (276)
-||..+.+..+.+.-.......+|+....||-|..+|.....+|.+++.+..
T Consensus 18 g~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 18 GYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 4677777777654433332234599999999999999999999988887766
No 211
>PRK06172 short chain dehydrogenase; Provisional
Probab=57.12 E-value=94 Score=25.93 Aligned_cols=54 Identities=20% Similarity=0.269 Sum_probs=37.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~ 122 (276)
++.+|+..+|.-|.++|......|.+++++...... +...+.++..|.++..+.
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVA 62 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 455888899999999999988899987776543221 122445566777766554
No 212
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=57.12 E-value=1.3e+02 Score=26.01 Aligned_cols=55 Identities=31% Similarity=0.472 Sum_probs=38.7
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v 118 (276)
+...+.++...+|...+|..|.+++..|+.+|.+++.+.+ ...+.+.++.+|++-
T Consensus 136 ~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 190 (324)
T cd08244 136 DLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAG---GPAKTALVRALGADV 190 (324)
T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCE
Confidence 4455666667566666899999999999999998655433 334556667788753
No 213
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=56.73 E-value=90 Score=26.12 Aligned_cols=54 Identities=19% Similarity=0.115 Sum_probs=36.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~ 122 (276)
++.+|+..+|..|.++|......|.+++++-..... ....+.++..|.++..+.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~ 65 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALA 65 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEE
Confidence 455888899999999999988889987665433111 122334556677776654
No 214
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=56.52 E-value=92 Score=26.74 Aligned_cols=51 Identities=31% Similarity=0.473 Sum_probs=37.2
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCE
Q 023814 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (276)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 117 (276)
+.+.++.+.+|...+|..|.+++..|+.+|.+++.+.+. .+.+.++.+|++
T Consensus 139 ~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~----~~~~~~~~~g~~ 189 (319)
T cd08267 139 GKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST----RNAELVRSLGAD 189 (319)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH----HHHHHHHHcCCC
Confidence 335566675565667999999999999999986665532 566667788874
No 215
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=56.26 E-value=1.2e+02 Score=25.23 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=38.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCH--HHHHHHHHCCCEEEEeCC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--ERRIILRALGAEVYLADP 123 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~--~~~~~~~~~Ga~v~~~~~ 123 (276)
++.+|+..+|.-|..++..-...|.+++++...+.+. ...+.++..|.++..+..
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKA 61 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4558888999999999999888999877654332221 223456667888776653
No 216
>PRK07791 short chain dehydrogenase; Provisional
Probab=56.23 E-value=1.3e+02 Score=25.98 Aligned_cols=73 Identities=14% Similarity=0.160 Sum_probs=44.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCC---------C-CHHHHHHHHHCCCEEEEeCCC-CChhHHHHHHHHH
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPST---------Y-SIERRIILRALGAEVYLADPA-VGFEGFVKKGEEI 137 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~---------~-~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~ 137 (276)
++.+|+..++.-|.++|......|..++++.... . .....+.++..|.++..+..+ .+.++..+...+.
T Consensus 7 k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 86 (286)
T PRK07791 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDAA 86 (286)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHH
Confidence 4558888888999999998888999877764321 0 112234455667776655432 2334444444444
Q ss_pred HHhC
Q 023814 138 LNRT 141 (276)
Q Consensus 138 ~~~~ 141 (276)
.++.
T Consensus 87 ~~~~ 90 (286)
T PRK07791 87 VETF 90 (286)
T ss_pred HHhc
Confidence 4443
No 217
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=56.22 E-value=67 Score=27.51 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=29.9
Q ss_pred HHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHHHHhhhCCCcCEEEEecC
Q 023814 110 ILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIG 183 (276)
Q Consensus 110 ~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG 183 (276)
.+...||++.+.--. +.-.++.++++++. +..++.+.|-... ..-..+..+|-++. +.+|.+|-+++
T Consensus 27 ~l~~~GAeL~fTy~~---e~l~krv~~la~~~-~s~~v~~cDV~~d--~~i~~~f~~i~~~~-g~lD~lVHsIa 93 (259)
T COG0623 27 ALAEQGAELAFTYQG---ERLEKRVEELAEEL-GSDLVLPCDVTND--ESIDALFATIKKKW-GKLDGLVHSIA 93 (259)
T ss_pred HHHHcCCEEEEEecc---HHHHHHHHHHHhhc-cCCeEEecCCCCH--HHHHHHHHHHHHhh-CcccEEEEEec
Confidence 445566666555311 12334455555554 3333334432221 13334444444444 34666666554
No 218
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=56.19 E-value=99 Score=26.81 Aligned_cols=53 Identities=32% Similarity=0.449 Sum_probs=39.4
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEE
Q 023814 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (276)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v 118 (276)
..+.++.+.+|...+|..|.+++..++.+|.+++++.. +..+.+.++.+|++-
T Consensus 158 ~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~~~~~ 210 (332)
T cd08259 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTR---SPEKLKILKELGADY 210 (332)
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHcCCcE
Confidence 55666777667777899999999999999999776654 235566667778743
No 219
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=56.04 E-value=1.5e+02 Score=26.60 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=41.6
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHH-CCCEEEEeC
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRA-LGAEVYLAD 122 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~-~Ga~v~~~~ 122 (276)
+++....|.-|...+..++.+|...+|+++ .++.|++..+. .|++++...
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d--~~~~Rl~~A~~~~g~~~~~~~ 221 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVD--RSPERLELAKEAGGADVVVNP 221 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeC--CCHHHHHHHHHhCCCeEeecC
Confidence 488999999999999999999999999884 46788888877 777766655
No 220
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=56.02 E-value=94 Score=27.01 Aligned_cols=52 Identities=27% Similarity=0.376 Sum_probs=37.6
Q ss_pred CCCCC-eEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 65 ITPGK-TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 65 ~~~~~-~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
+.++. +.+|...+|..|.+++..|+.+|.+.++.... ..+.+.++.+|++-+
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~---~~~~~~~~~~g~~~~ 194 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGK---AEEEDYLKELGASEV 194 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHhcCCcEE
Confidence 55666 65555567999999999999999986655433 345577788898533
No 221
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=55.54 E-value=1.2e+02 Score=26.76 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=35.5
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 67 ~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
++.+ |+...+|..|.+++..|+.+|.+.++++. .+..+...++.+|++.+
T Consensus 175 ~~~~-vlI~g~g~vg~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~~~ 224 (350)
T cd08240 175 ADEP-VVIIGAGGLGLMALALLKALGPANIIVVD--IDEAKLEAAKAAGADVV 224 (350)
T ss_pred CCCE-EEEECCcHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCcEE
Confidence 4555 44446789999999999999996555543 24667777788888533
No 222
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=55.45 E-value=68 Score=28.48 Aligned_cols=49 Identities=22% Similarity=0.240 Sum_probs=36.6
Q ss_pred EeCCChHHHHHHHHHHHcCCcEEEEecCCCCH--HHHHH----HHHCCCEEEEeC
Q 023814 74 ELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--ERRII----LRALGAEVYLAD 122 (276)
Q Consensus 74 ~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~--~~~~~----~~~~Ga~v~~~~ 122 (276)
..-..|.+.|+-.+|.++|+.+++..|+...+ .-++. .+..|+++..+.
T Consensus 159 vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~ 213 (310)
T COG0078 159 VGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTE 213 (310)
T ss_pred EcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEec
Confidence 33447899999999999999999999986533 22222 234588998886
No 223
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=55.35 E-value=93 Score=27.47 Aligned_cols=51 Identities=29% Similarity=0.376 Sum_probs=36.6
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 66 ~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
.++.+.+|.+ .|..|.+++..|+.+|.+.++++ ..+..|....+.+|++-+
T Consensus 162 ~~g~~vlV~g-~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~ 212 (341)
T cd05281 162 VSGKSVLITG-CGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGADVV 212 (341)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCccee
Confidence 4556656654 68999999999999998644555 346677788888998543
No 224
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.31 E-value=1.1e+02 Score=26.79 Aligned_cols=55 Identities=16% Similarity=0.087 Sum_probs=38.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC--HHHHHHHHHCCCEEEEeCC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADP 123 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~ 123 (276)
++.+|+..+|.-|.++|..-...|.++++.-..... ....+.++..|.+++.+..
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 69 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAG 69 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeC
Confidence 455888899999999999888889987665432211 2334556777888876654
No 225
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=55.14 E-value=1e+02 Score=27.77 Aligned_cols=55 Identities=25% Similarity=0.366 Sum_probs=39.0
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v 118 (276)
+...+.++.+.+| ...|..|.+++..|+.+|.+.++++. .+..|.+.++.+|+..
T Consensus 170 ~~~~~~~g~~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~~--~~~~~~~~~~~~g~~~ 224 (375)
T cd08282 170 ELAGVQPGDTVAV-FGAGPVGLMAAYSAILRGASRVYVVD--HVPERLDLAESIGAIP 224 (375)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHcCCeE
Confidence 3344556667555 56789999999999999985444443 3567888888899853
No 226
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.12 E-value=1.1e+02 Score=25.19 Aligned_cols=54 Identities=19% Similarity=0.200 Sum_probs=36.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeCC
Q 023814 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (276)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (276)
+.+|+..+|..|.+++......|.+++++.....+ ......++..|.+++.+..
T Consensus 9 ~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (239)
T PRK07666 9 NALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATA 63 (239)
T ss_pred EEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEEC
Confidence 45888889999999999888899987776654221 1123345566777766543
No 227
>PRK12939 short chain dehydrogenase; Provisional
Probab=54.87 E-value=1.1e+02 Score=25.31 Aligned_cols=54 Identities=19% Similarity=0.090 Sum_probs=35.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCC-CHHHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-SIERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~~~ 122 (276)
.+.+|+..+|.-|.++|....+.|.+++++..... .......++..+.++..+.
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIA 62 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 45588889999999999998889998766633211 1122334555676666554
No 228
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=54.80 E-value=1.4e+02 Score=25.88 Aligned_cols=54 Identities=30% Similarity=0.379 Sum_probs=38.7
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
+.+.++.+.+|...+|-.|.+++..|+.+|.+++++.. +..+.+.++.+|++-+
T Consensus 135 ~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v 188 (329)
T cd08250 135 GEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS---SDEKAEFLKSLGCDRP 188 (329)
T ss_pred cCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC---cHHHHHHHHHcCCceE
Confidence 45667777666667889999999999999998655543 3455666677887433
No 229
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=54.72 E-value=35 Score=32.81 Aligned_cols=51 Identities=16% Similarity=0.025 Sum_probs=39.5
Q ss_pred EEEeCC---ChHHHHHHHHHHHcC-CcEEEEecCCC--CHHHHHHHHHCCCEEEEeC
Q 023814 72 LIELTS---GNTGIGLAFIAASRG-YKLIIIMPSTY--SIERRIILRALGAEVYLAD 122 (276)
Q Consensus 72 vv~~ss---GN~g~a~A~~a~~~g-~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~~~ 122 (276)
|+-... +|.+.|++..++.+| ++++++.|+.. +...++.++..|+.+..+.
T Consensus 177 Va~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~ 233 (525)
T PRK13376 177 IALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFS 233 (525)
T ss_pred EEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 544433 699999999999998 99999999865 4455566777898887765
No 230
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=54.61 E-value=1.3e+02 Score=26.39 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=31.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
++.-..|+.|.+++..++.+|.+++++-+. ..+....+.+|++.+
T Consensus 155 vlViG~G~iG~~~a~~L~~~Ga~V~v~~r~---~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 155 VLVLGFGRTGMTLARTLKALGANVTVGARK---SAHLARITEMGLSPF 199 (296)
T ss_pred EEEECCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHcCCeee
Confidence 666677889999888888888866665333 344566667787644
No 231
>PLN02702 L-idonate 5-dehydrogenase
Probab=54.57 E-value=1.3e+02 Score=26.81 Aligned_cols=57 Identities=26% Similarity=0.362 Sum_probs=41.1
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
+...+.++.+.+|. ..|..|.++...|+.+|.+.++.+.. +..|.+.++.+|++...
T Consensus 175 ~~~~~~~g~~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 175 RRANIGPETNVLVM-GAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEIV 231 (364)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEE
Confidence 34445666664555 57889999999999999986555543 46777888889987554
No 232
>PRK08643 acetoin reductase; Validated
Probab=54.51 E-value=1.3e+02 Score=25.16 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=35.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHH-HHHHHHHCCCEEEEeC
Q 023814 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIE-RRIILRALGAEVYLAD 122 (276)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~-~~~~~~~~Ga~v~~~~ 122 (276)
+.+|+..+|..|.++|......|..++++........ ....+...|.++..+.
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 57 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVK 57 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 4588888999999999998889988776654322211 2233455677766554
No 233
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=54.50 E-value=1.1e+02 Score=25.26 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=37.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC--HHHHHHHHHCCCEEEEeCC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADP 123 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~ 123 (276)
.+.+|+..+|--|.++|......|..+++....... +...+.++..|.+++.+..
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 63 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQA 63 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEEC
Confidence 455888899999999999888889887765432211 1223455567888876654
No 234
>PRK08862 short chain dehydrogenase; Provisional
Probab=54.49 E-value=1e+02 Score=25.62 Aligned_cols=72 Identities=18% Similarity=0.105 Sum_probs=42.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeCCC-CChhHHHHHHHHHHHh
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA-VGFEGFVKKGEEILNR 140 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 140 (276)
+.-+|+..++.-|.++|......|.+++++-..... ....+.++..|.+++.+..+ .+.++..+...+..++
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQ 79 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHH
Confidence 455788888889999999999999987776443211 12234566677776654321 2333333344444444
No 235
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=54.44 E-value=26 Score=28.35 Aligned_cols=42 Identities=29% Similarity=0.370 Sum_probs=30.9
Q ss_pred hchHHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEe
Q 023814 161 ETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIE 208 (276)
Q Consensus 161 ~t~~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe 208 (276)
...+.+|.++ +-.||.|+.-.|=|-++ .+|+.+|+.++++-.
T Consensus 54 ~~a~~~L~~~-Gf~PDvI~~H~GWGe~L-----flkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 54 ARAARQLRAQ-GFVPDVIIAHPGWGETL-----FLKDVFPDAPLIGYF 95 (171)
T ss_pred HHHHHHHHHc-CCCCCEEEEcCCcchhh-----hHHHhCCCCcEEEEE
Confidence 3344455444 55799999888877654 899999999998763
No 236
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=54.39 E-value=1.4e+02 Score=25.55 Aligned_cols=56 Identities=27% Similarity=0.329 Sum_probs=39.5
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
+.+.+.++.+.+|...+|..|.+++..++.+|.+++++.. +..+.+.++.+|++.+
T Consensus 133 ~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 188 (325)
T TIGR02824 133 QRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAG---SDEKCAACEALGADIA 188 (325)
T ss_pred HhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEE
Confidence 4455667777666667789999999999999988665543 2345556677887544
No 237
>PRK08303 short chain dehydrogenase; Provisional
Probab=54.39 E-value=1.2e+02 Score=26.58 Aligned_cols=72 Identities=19% Similarity=0.116 Sum_probs=43.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCC-----------CHHHHHHHHHCCCEEEEeCCC-CChhHHHHHHHH
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-----------SIERRIILRALGAEVYLADPA-VGFEGFVKKGEE 136 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~-----------~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~ 136 (276)
++.+|+..++--|.++|..-...|.+++++-.... -....+.++..|.+++.+..+ .+.++..+...+
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~ 88 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVER 88 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 45588888888999999988889998777654311 112234556677776654322 233444444444
Q ss_pred HHHh
Q 023814 137 ILNR 140 (276)
Q Consensus 137 ~~~~ 140 (276)
..+.
T Consensus 89 ~~~~ 92 (305)
T PRK08303 89 IDRE 92 (305)
T ss_pred HHHH
Confidence 4443
No 238
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=54.29 E-value=80 Score=25.30 Aligned_cols=52 Identities=27% Similarity=0.229 Sum_probs=36.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecCC-----CCHHHHHHHHHCCCEEEEeCC
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPST-----YSIERRIILRALGAEVYLADP 123 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~-----~~~~~~~~~~~~Ga~v~~~~~ 123 (276)
+|+...|..|..+|..-...+-.-++++... .....++.++..|++|.....
T Consensus 4 litGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~ 60 (181)
T PF08659_consen 4 LITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQC 60 (181)
T ss_dssp EEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE-
T ss_pred EEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeecc
Confidence 6777889999999998666665555555443 234578889999999998764
No 239
>PRK12828 short chain dehydrogenase; Provisional
Probab=54.02 E-value=1.2e+02 Score=24.75 Aligned_cols=55 Identities=22% Similarity=0.068 Sum_probs=38.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeCC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (276)
++.+|+.++|--|.+++....+.|.+++++.....+ ......+...+.+++.++-
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~ 63 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDL 63 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeec
Confidence 466888899999999999888889997776653221 1233445566777777664
No 240
>PRK07478 short chain dehydrogenase; Provisional
Probab=53.93 E-value=1.1e+02 Score=25.55 Aligned_cols=72 Identities=18% Similarity=0.040 Sum_probs=43.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeCCC-CChhHHHHHHHHHHHh
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA-VGFEGFVKKGEEILNR 140 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 140 (276)
++-+|+..+|.-|.++|..-...|.+++++.....+ ..-...++..|.++..+..+ .+.++..+...+..++
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 455888888999999999988899987776543211 11233456677776655432 2333444444444444
No 241
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=53.93 E-value=1.5e+02 Score=25.81 Aligned_cols=68 Identities=29% Similarity=0.369 Sum_probs=44.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHH----HH-HCCCEEEEeCCCC-ChhHHHHHHHHHHH
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRII----LR-ALGAEVYLADPAV-GFEGFVKKGEEILN 139 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~----~~-~~Ga~v~~~~~~~-~~~~~~~~a~~~~~ 139 (276)
.+.+||..|+.-|.++|..-++.|.+++++.... +|+.. ++ .+|.+|...+-+. +.++..+...++..
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~---~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~ 80 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGYNLILVARRE---DKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKE 80 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcH---HHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHh
Confidence 4568999999999999999999999999998864 33332 22 3566666555332 22333444444433
No 242
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=53.87 E-value=90 Score=27.18 Aligned_cols=49 Identities=35% Similarity=0.473 Sum_probs=34.2
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCE
Q 023814 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (276)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 117 (276)
...+.++.+.+|...+|..|.+++..|+.+|.+++++. +.+..+.+|++
T Consensus 157 ~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~-------~~~~~~~~g~~ 205 (325)
T cd08264 157 TAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVS-------RKDWLKEFGAD 205 (325)
T ss_pred hcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEe-------HHHHHHHhCCC
Confidence 34566777756655679999999999999999866553 12444557763
No 243
>PRK06128 oxidoreductase; Provisional
Probab=53.83 E-value=1.5e+02 Score=25.73 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=38.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCC---CHHHHHHHHHCCCEEEEeCC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY---SIERRIILRALGAEVYLADP 123 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~---~~~~~~~~~~~Ga~v~~~~~ 123 (276)
++.+|+..+|--|.++|..-...|.++++...... .....+.++..|.+++.+..
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPG 113 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEec
Confidence 45688889999999999998889998876543221 12234556677887766543
No 244
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=53.80 E-value=1.7e+02 Score=26.28 Aligned_cols=54 Identities=22% Similarity=0.325 Sum_probs=39.1
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 117 (276)
+...+.++.+.+|. ..|..|.+++..|+.+|.+.++.+.. +..+.+.++.+|++
T Consensus 177 ~~~~~~~g~~vlI~-g~g~vG~~a~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 230 (365)
T cd05279 177 NTAKVTPGSTCAVF-GLGGVGLSVIMGCKAAGASRIIAVDI--NKDKFEKAKQLGAT 230 (365)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCC
Confidence 34456677775554 67999999999999999885555432 55677777889984
No 245
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=53.67 E-value=44 Score=24.77 Aligned_cols=84 Identities=24% Similarity=0.333 Sum_probs=50.5
Q ss_pred hHHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcccccccCCCCCCccccccccc
Q 023814 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAML 242 (276)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~ 242 (276)
.+.++.++++ .+.|++..-+|.+.- .+....|...|+++.+...-. ..-.+--+..|..+.....
T Consensus 7 aa~~~A~~~~--ak~Ivv~T~sG~ta~----~isk~RP~~pIiavt~~~~~~---------r~l~l~~GV~p~~~~~~~~ 71 (117)
T PF02887_consen 7 AAVELAEDLN--AKAIVVFTESGRTAR----LISKYRPKVPIIAVTPNESVA---------RQLSLYWGVYPVLIEEFDK 71 (117)
T ss_dssp HHHHHHHHHT--ESEEEEE-SSSHHHH----HHHHT-TSSEEEEEESSHHHH---------HHGGGSTTEEEEECSSHSH
T ss_pred HHHHHHHhcC--CCEEEEECCCchHHH----HHHhhCCCCeEEEEcCcHHHH---------hhhhcccceEEEEeccccc
Confidence 3457777773 789999999988764 445557999999999765521 0001222223322222211
Q ss_pred CeEEEeCHHHHHHHHHHHHHHcCCe
Q 023814 243 DEVITVSSEEAIETSKLLALKEGLL 267 (276)
Q Consensus 243 d~~~~v~d~e~~~a~~~l~~~eGi~ 267 (276)
+ .++.++.+.+++.+.|++
T Consensus 72 ~------~~~~~~~a~~~~~~~g~~ 90 (117)
T PF02887_consen 72 D------TEELIAEALEYAKERGLL 90 (117)
T ss_dssp S------HHHHHHHHHHHHHHTTSS
T ss_pred c------HHHHHHHHHHHHHHcCCC
Confidence 2 577788888888888883
No 246
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=53.36 E-value=76 Score=28.66 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=37.9
Q ss_pred EEEeCC---ChHHHHHHHH-HHHcCCcEEEEecCCC--CHHHHHHHHHCCCEEEEeC
Q 023814 72 LIELTS---GNTGIGLAFI-AASRGYKLIIIMPSTY--SIERRIILRALGAEVYLAD 122 (276)
Q Consensus 72 vv~~ss---GN~g~a~A~~-a~~~g~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~~~ 122 (276)
|+-... +|.+.|++.. ++.+|+.++++.|+.. +..-++.++..|.++..+.
T Consensus 162 ia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 218 (338)
T PRK08192 162 IAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITD 218 (338)
T ss_pred EEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 554444 6889999976 5577999999999864 4555666777888887765
No 247
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=53.33 E-value=64 Score=25.62 Aligned_cols=50 Identities=28% Similarity=0.256 Sum_probs=39.6
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCC
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 123 (276)
.|+....||-|.+.+..+..+|.+.+++- ....+++..+..++..+.++.
T Consensus 22 ~vvv~G~G~vg~gA~~~~~~lGa~v~~~d---~~~~~~~~~~~~~~~~i~~~~ 71 (168)
T PF01262_consen 22 KVVVTGAGRVGQGAAEIAKGLGAEVVVPD---ERPERLRQLESLGAYFIEVDY 71 (168)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEEE---SSHHHHHHHHHTTTEESEETT
T ss_pred EEEEECCCHHHHHHHHHHhHCCCEEEecc---CCHHHHHhhhcccCceEEEcc
Confidence 37888899999999999999999876652 246677888899998887753
No 248
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=53.28 E-value=1.4e+02 Score=26.27 Aligned_cols=54 Identities=30% Similarity=0.455 Sum_probs=39.4
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 117 (276)
....+.++.+.+|. ..|-.|.+++..|+.+|.+.++.+.. +..+.+.++.+|++
T Consensus 155 ~~~~~~~g~~VlI~-g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 208 (341)
T cd08262 155 RRARLTPGEVALVI-GCGPIGLAVIAALKARGVGPIVASDF--SPERRALALAMGAD 208 (341)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCc
Confidence 44556677775565 46889988888999999886555443 56777888889985
No 249
>PRK05876 short chain dehydrogenase; Provisional
Probab=53.25 E-value=1.2e+02 Score=26.06 Aligned_cols=54 Identities=19% Similarity=0.103 Sum_probs=36.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~ 122 (276)
++.+|+..+|.-|.++|......|.+++++...... ....+.++..|.++..+.
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~ 61 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVM 61 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEe
Confidence 455888889999999999988899987665432111 112334556677776554
No 250
>PRK06181 short chain dehydrogenase; Provisional
Probab=52.47 E-value=1.1e+02 Score=25.65 Aligned_cols=53 Identities=23% Similarity=0.216 Sum_probs=36.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeC
Q 023814 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (276)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~ 122 (276)
+.+|+..+|..|.+++......|.+++++...... ....+.++..|.+++.+.
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~ 56 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVP 56 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 44788888999999999988899987777654211 122334555677766554
No 251
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=52.26 E-value=1.4e+02 Score=24.79 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=37.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC--HHHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~ 122 (276)
+..+|+..+|.-|.++|......|..++++...... ....+.++..|.+++...
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASE 59 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEE
Confidence 355888899999999999999999887665543221 223455566788876544
No 252
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=52.25 E-value=1.5e+02 Score=25.30 Aligned_cols=54 Identities=28% Similarity=0.324 Sum_probs=38.0
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
+.+.++.+.+|...+|..|.+++..++.+|.++++..+. ..+.+.+..+|++-+
T Consensus 140 ~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 193 (325)
T cd08253 140 AGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASS---AEGAELVRQAGADAV 193 (325)
T ss_pred hCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCCEE
Confidence 445566675666667899999999999999886655443 355666667787543
No 253
>PRK12831 putative oxidoreductase; Provisional
Probab=52.15 E-value=72 Score=30.05 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=38.9
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCC-----CHHHHHHHHHCCCEEEEe
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-----SIERRIILRALGAEVYLA 121 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~-----~~~~~~~~~~~Ga~v~~~ 121 (276)
.|+.-.+||.|.-+|..+.++|.+++++...+. ....++.++..|.+++.-
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~ 338 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLL 338 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEec
Confidence 388899999999999999999999988876431 223445566778877644
No 254
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=52.14 E-value=1.1e+02 Score=27.54 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=38.3
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 117 (276)
+.+.+.++.+.+|. ..|..|.+++..|+.+|..-++++.. ...+++.++.+|++
T Consensus 184 ~~~~~~~g~~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~a~~lGa~ 237 (373)
T cd08299 184 NTAKVTPGSTCAVF-GLGGVGLSAIMGCKAAGASRIIAVDI--NKDKFAKAKELGAT 237 (373)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCc
Confidence 44556677774555 67899999999999999843344432 45677888889985
No 255
>PRK08278 short chain dehydrogenase; Provisional
Probab=52.12 E-value=1.5e+02 Score=25.27 Aligned_cols=54 Identities=22% Similarity=0.251 Sum_probs=37.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCH--------HHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--------ERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~--------~~~~~~~~~Ga~v~~~~ 122 (276)
++.+|+..+|--|.++|......|.+++++.....+. .-.+.++..|.+++.+.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 68 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLV 68 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEE
Confidence 4558888889999999999989999888876543211 11234566787776654
No 256
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=52.06 E-value=1.1e+02 Score=26.61 Aligned_cols=50 Identities=24% Similarity=0.245 Sum_probs=35.7
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHc-CCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 68 GKTVLIELTSGNTGIGLAFIAASR-GYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 68 ~~~~vv~~ssGN~g~a~A~~a~~~-g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
+.+.+|...+|..|.+++..|+.+ |.+++.+... ..+.+.++.+|++-+.
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~---~~~~~~l~~~g~~~~~ 199 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASR---PESQEWVLELGAHHVI 199 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc---HHHHHHHHHcCCCEEE
Confidence 566556666788999988889987 9887665443 3566777788885443
No 257
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=51.85 E-value=1.3e+02 Score=26.05 Aligned_cols=48 Identities=27% Similarity=0.340 Sum_probs=35.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
.+.+|...+|..|.+++..|+.+|.+++++.+ +..+.+.++.+|++-+
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 195 (325)
T cd05280 148 GPVLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGASEV 195 (325)
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEE
Confidence 35455556799999999999999998555433 4467777788998544
No 258
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=51.84 E-value=1.5e+02 Score=25.18 Aligned_cols=56 Identities=30% Similarity=0.402 Sum_probs=38.7
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
.+.+.++.+.+|...+|..|.+++..|+.+|.+++++.. +..+.+.++.+|++-+.
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 186 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVS---SEEKAELARAAGADHVI 186 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHCCCCEEE
Confidence 345556666555556789999999999999988655532 44566667778875433
No 259
>PRK06348 aspartate aminotransferase; Provisional
Probab=51.58 E-value=1.9e+02 Score=26.20 Aligned_cols=51 Identities=12% Similarity=0.146 Sum_probs=32.8
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeC
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 122 (276)
.|+..+++.++..++..+- .+-.-.|+++.-+-..-...++..|++++.++
T Consensus 91 ~i~it~G~~~al~~~~~~~-~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~ 141 (384)
T PRK06348 91 EIMATVGACHGMYLALQSI-LDPGDEVIIHEPYFTPYKDQIEMVGGKPIILE 141 (384)
T ss_pred hEEEcCChHHHHHHHHHHh-cCCCCEEEEeCCCCcchHHHHHHcCCEEEEec
Confidence 3777777788777665543 22223556665444455667778999998876
No 260
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.33 E-value=1.9e+02 Score=26.80 Aligned_cols=55 Identities=15% Similarity=0.170 Sum_probs=38.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 123 (276)
.+.+|+..+|..|.++|......|.+++++-.........+.....+.+++.++-
T Consensus 211 ~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv 265 (450)
T PRK08261 211 KVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDI 265 (450)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeC
Confidence 4568888889999999999888999877764432222223334456777777764
No 261
>PRK07454 short chain dehydrogenase; Provisional
Probab=51.32 E-value=1.3e+02 Score=24.74 Aligned_cols=70 Identities=21% Similarity=0.182 Sum_probs=41.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeCCC-CChhHHHHHHHHHHH
Q 023814 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA-VGFEGFVKKGEEILN 139 (276)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~ 139 (276)
+.+|+..+|..|.+++......|.+++++...... ......++..+.++..+..+ .+.++..+...+..+
T Consensus 8 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (241)
T PRK07454 8 RALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLE 79 (241)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 45788889999999999999999987776643211 11223344556666555432 233333333344433
No 262
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=51.32 E-value=1.2e+02 Score=26.70 Aligned_cols=52 Identities=23% Similarity=0.265 Sum_probs=36.7
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 65 ~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
+.++.+.+|. ..|..|.+++..|+.+|++++++.+. ..+.+.++.+|++-+.
T Consensus 167 ~~~g~~vlV~-g~g~vG~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~vi 218 (337)
T cd05283 167 VGPGKRVGVV-GIGGLGHLAVKFAKALGAEVTAFSRS---PSKKEDALKLGADEFI 218 (337)
T ss_pred CCCCCEEEEE-CCcHHHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHcCCcEEe
Confidence 5566665664 47899999999999999976555433 3566667778876443
No 263
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.24 E-value=1.3e+02 Score=24.90 Aligned_cols=54 Identities=28% Similarity=0.173 Sum_probs=36.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCC-CHHHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-SIERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~~~ 122 (276)
.+-+|+..+|..|.++|......|..++++..... .....+.++..|+++..+.
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYA 60 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 45578888899999999998888988666543321 1222344566688776554
No 264
>PRK06949 short chain dehydrogenase; Provisional
Probab=51.23 E-value=1.1e+02 Score=25.62 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=27.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~ 101 (276)
++.+|+..+|.-|.++|....+.|.+++++...
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 466888899999999999998899987766553
No 265
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=51.16 E-value=74 Score=29.78 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=37.6
Q ss_pred EEEeCC---ChHHHHHHHHHHHc-CCcEEEEecCCC--CHHHHHHHHHCCCEEEEeC
Q 023814 72 LIELTS---GNTGIGLAFIAASR-GYKLIIIMPSTY--SIERRIILRALGAEVYLAD 122 (276)
Q Consensus 72 vv~~ss---GN~g~a~A~~a~~~-g~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~~~ 122 (276)
|+-... +|.+.|++..++.+ |++++++.|+.. +...++.++..|.++..++
T Consensus 244 Ia~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 244 IALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred EEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence 444434 69999999996665 999999999865 3444566667788887765
No 266
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=51.04 E-value=1.6e+02 Score=27.99 Aligned_cols=85 Identities=18% Similarity=0.180 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCeEEEEe-CCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCC-
Q 023814 47 VKDRIAYSMIKDAEDKGLITPGKTVLIEL-TSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA- 124 (276)
Q Consensus 47 ~K~R~a~~~~~~a~~~g~~~~~~~~vv~~-ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~- 124 (276)
+++..+...+..|.+.+. +. ||++ .||.+++.++.+ +-..+.+++.+.. ..-.+..-.+|..-+.++..
T Consensus 359 ~~~aia~sAv~~A~~l~a----ka-IVv~T~SG~TA~~lS~~--RP~~pIiavT~~~--~~~r~l~l~~GV~p~~~~~~~ 429 (480)
T cd00288 359 TTEAVAMSAVRAAFELGA----KA-IVVLTTSGRTARLVSKY--RPNAPIIAVTRNE--QTARQLHLYRGVYPVLFEEPK 429 (480)
T ss_pred hHHHHHHHHHHHHHhcCC----CE-EEEECCCcHHHHHHHhh--CCCCCEEEEcCCH--HHhhheeeccCcEEEEecccc
Confidence 455555555555555553 33 4444 667777665544 3457777776652 11122222357666655532
Q ss_pred ----CChhHHHHHHHHHHHh
Q 023814 125 ----VGFEGFVKKGEEILNR 140 (276)
Q Consensus 125 ----~~~~~~~~~a~~~~~~ 140 (276)
.+.++....+.+.+.+
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~ 449 (480)
T cd00288 430 PGWQEDTDARLKAAVNVAKE 449 (480)
T ss_pred cccCCCHHHHHHHHHHHHHH
Confidence 2334445555555444
No 267
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=50.78 E-value=1.6e+02 Score=25.96 Aligned_cols=58 Identities=24% Similarity=0.311 Sum_probs=39.3
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 60 ~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
.+...+.++.+.+|. ..|..|.+++..|+.+|.+.++++.. +..+...++.+|++-+.
T Consensus 155 ~~~~~~~~g~~vlI~-g~g~vG~~a~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~vi 212 (343)
T cd05285 155 CRRAGVRPGDTVLVF-GAGPIGLLTAAVAKAFGATKVVVTDI--DPSRLEFAKELGATHTV 212 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCcEEe
Confidence 355667777776665 46778888888999999984333322 34566677778886443
No 268
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=50.71 E-value=77 Score=28.12 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=34.0
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEecCCCC--HHHHHH-HHHCCCEEEEeC
Q 023814 76 TSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRII-LRALGAEVYLAD 122 (276)
Q Consensus 76 ssGN~g~a~A~~a~~~g~~~~ivvp~~~~--~~~~~~-~~~~Ga~v~~~~ 122 (276)
-.+|...|++..++++|++++++.|+.-. ...++. .+..|.++...+
T Consensus 160 d~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 160 DGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred CCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 34789999999999999999999998643 223332 456788877654
No 269
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=50.58 E-value=1.5e+02 Score=24.68 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=37.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCH-HHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI-ERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~-~~~~~~~~~Ga~v~~~~ 122 (276)
++.+|+..+|..|.++|..-...|.+++++.....+. .....++..+.+++.+.
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 59 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVA 59 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 3558888899999999999888899887776543222 22334555677766554
No 270
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=50.51 E-value=1.8e+02 Score=25.63 Aligned_cols=52 Identities=25% Similarity=0.413 Sum_probs=37.0
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCE
Q 023814 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (276)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 117 (276)
...+.++.+.+|.. .|..|.++...|+.+|++++++.. +..+.+.++.+|++
T Consensus 160 ~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~ 211 (345)
T cd08260 160 QARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDI---DDDKLELARELGAV 211 (345)
T ss_pred ccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHhCCC
Confidence 34455666656665 789999999999999998666544 34566777778873
No 271
>PRK05866 short chain dehydrogenase; Provisional
Probab=50.43 E-value=1.2e+02 Score=26.29 Aligned_cols=53 Identities=15% Similarity=0.088 Sum_probs=35.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeC
Q 023814 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (276)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~ 122 (276)
+.+|+..+|..|.++|......|.+++++...... ....+.+...|.++..+.
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~ 95 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVP 95 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEE
Confidence 45888889999999999988889988777654211 112233444566665544
No 272
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=50.39 E-value=1.1e+02 Score=26.96 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=35.0
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 68 GKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 68 ~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
+.+.+|...+|..|.+++..|+.+|++++++... .+.+.++.+|++-+
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~----~~~~~~~~~g~~~~ 210 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST----DAIPLVKSLGADDV 210 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc----chHHHHHHhCCceE
Confidence 6675566667999999999999999986655432 35667778887533
No 273
>PRK08017 oxidoreductase; Provisional
Probab=50.37 E-value=1.5e+02 Score=24.69 Aligned_cols=51 Identities=25% Similarity=0.321 Sum_probs=38.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCC
Q 023814 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (276)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 123 (276)
+.+|+..+|.-|.++|......|.+++++... ..+.+.++..|++.+.++-
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 54 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK---PDDVARMNSLGFTGILLDL 54 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHhHHHHhCCCeEEEeec
Confidence 45788888999999999988889987665443 3555666667888777664
No 274
>PRK07890 short chain dehydrogenase; Provisional
Probab=50.31 E-value=1.3e+02 Score=24.99 Aligned_cols=54 Identities=20% Similarity=0.190 Sum_probs=35.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~ 122 (276)
++.+|+..+|.-|.++|......|.+++++-..... +.....++..|.++..+.
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVP 60 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEe
Confidence 456888899999999999998999987766543211 112233444566665554
No 275
>PRK05867 short chain dehydrogenase; Provisional
Probab=50.24 E-value=1.4e+02 Score=24.99 Aligned_cols=54 Identities=19% Similarity=0.092 Sum_probs=35.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~ 122 (276)
++.+|+..+|.-|.++|..-...|.+++++-..... ....+.++..|.++..+.
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 64 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVC 64 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 455888888999999999988899987665432111 112234555677766544
No 276
>PRK06194 hypothetical protein; Provisional
Probab=50.22 E-value=1.6e+02 Score=25.10 Aligned_cols=55 Identities=29% Similarity=0.279 Sum_probs=36.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeCC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (276)
.+.+|+..+|.-|.++|......|.+++++-..... ......+...|.+++.+..
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 62 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRT 62 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEEC
Confidence 355888899999999999988889987766442211 1223344555777766553
No 277
>PRK12744 short chain dehydrogenase; Provisional
Probab=50.20 E-value=1.4e+02 Score=25.07 Aligned_cols=54 Identities=30% Similarity=0.199 Sum_probs=35.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCC-CH----HHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-SI----ERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~-~~----~~~~~~~~~Ga~v~~~~ 122 (276)
++.+|+..+|.-|.++|..-...|.+++++..... .. ...+.++..|.++..+.
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 67 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQ 67 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEe
Confidence 35588888899999999998888999776653211 11 22344555677766554
No 278
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=50.10 E-value=1.4e+02 Score=24.64 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=37.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~ 122 (276)
.+.+|+..+|.-|.+++......|.+++++...... ....+.++..+.++..+.
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 61 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQ 61 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 455888899999999999988889987776554211 223345666777666554
No 279
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=50.05 E-value=1.7e+02 Score=25.30 Aligned_cols=54 Identities=26% Similarity=0.351 Sum_probs=37.7
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
..+.++.+ |+...+|..|.+++..|+..|.++++..+ +..+.+.++.+|++-+.
T Consensus 156 ~~~~~g~~-vli~g~g~~g~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 209 (336)
T cd08276 156 GPLKPGDT-VLVQGTGGVSLFALQFAKAAGARVIATSS---SDEKLERAKALGADHVI 209 (336)
T ss_pred cCCCCCCE-EEEECCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 44566666 44446788999999999999998655543 44666777777876443
No 280
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=50.04 E-value=1.3e+02 Score=26.36 Aligned_cols=54 Identities=28% Similarity=0.240 Sum_probs=36.7
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEE
Q 023814 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (276)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v 118 (276)
...+.++.+.+|. ..|-.|.++...|+.+|...++.+ ..+..+.+.++.+|++-
T Consensus 162 ~~~~~~~~~VlI~-g~g~vg~~~iqlak~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (347)
T cd05278 162 LAGIKPGSTVAVI-GAGPVGLCAVAGARLLGAARIIAV--DSNPERLDLAKEAGATD 215 (347)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHhCCcE
Confidence 3445666775564 457888888888999997444444 33457777778888653
No 281
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=49.85 E-value=1.5e+02 Score=24.58 Aligned_cols=52 Identities=33% Similarity=0.498 Sum_probs=34.0
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEE
Q 023814 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (276)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v 118 (276)
..+.++.+.+|...++ .|.+++..++.+|.+++++.+. +.+.+.++.+|++.
T Consensus 130 ~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 181 (271)
T cd05188 130 GVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS---DEKLELAKELGADH 181 (271)
T ss_pred cCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHhCCce
Confidence 3335566645555555 9999999999999776665443 35566666677543
No 282
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=49.76 E-value=1.5e+02 Score=25.29 Aligned_cols=50 Identities=32% Similarity=0.336 Sum_probs=37.6
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 67 ~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
++.+.+|...+|..|.+++..|+.+|.+++...+ +..+.+.++.+|+...
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 181 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAAEV 181 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEE
Confidence 4567566667799999999999999998555433 4577788888998633
No 283
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.71 E-value=1.5e+02 Score=24.62 Aligned_cols=53 Identities=28% Similarity=0.332 Sum_probs=36.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC--HHHHHHHHHCCCEEEEeC
Q 023814 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLAD 122 (276)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~ 122 (276)
+.+|+..+|.-|.++|..-...|..++++.....+ ....+.++..+.++..+.
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 58 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFP 58 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEE
Confidence 45888899999999999988889988776543222 223444555677666554
No 284
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=49.65 E-value=1.4e+02 Score=24.97 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=35.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~ 122 (276)
.+.+|+..+|..|.++|......|.+++++...... ..-...++..|.++..+.
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 66 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALA 66 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 456888899999999999888889987776553211 122334555676555544
No 285
>PRK09134 short chain dehydrogenase; Provisional
Probab=49.41 E-value=1.6e+02 Score=24.71 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=37.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCH--HHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--ERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~--~~~~~~~~~Ga~v~~~~ 122 (276)
++.+|+..+|.-|..++......|..++++...+.+. .-...++..|.+++.+.
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQ 65 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 4568888999999999999999999887765432221 12233445577776554
No 286
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=49.36 E-value=57 Score=29.58 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=38.1
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCC
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 123 (276)
.++..++|..+..++..+...+-.-.|++|..+-......++..|++++.++-
T Consensus 48 ~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~ 100 (375)
T PRK11706 48 KVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDI 100 (375)
T ss_pred eEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEec
Confidence 37777888887766554432333356788887777778888899999999874
No 287
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=49.34 E-value=1.5e+02 Score=26.51 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=30.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCC
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (276)
|+..++...+..++..+- +.-.-.|+++.-+-.......+..|++++.++.+
T Consensus 79 i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 130 (351)
T PRK14807 79 IFVGNGSDEIIHLIMLAF-INKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLK 130 (351)
T ss_pred EEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecC
Confidence 665555566655554432 3322345555433344556678899999988743
No 288
>PRK07035 short chain dehydrogenase; Provisional
Probab=49.34 E-value=1.5e+02 Score=24.59 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=35.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~ 122 (276)
.+.+|+..+|.-|.+++......|.+++++-..... ....+.+...|.++..+.
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 63 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALA 63 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 355888899999999999988899987776543211 122334455676665544
No 289
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=49.27 E-value=1.2e+02 Score=26.50 Aligned_cols=59 Identities=25% Similarity=0.259 Sum_probs=39.3
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCC-CHHHHHHHHHCCCEEEEe
Q 023814 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-SIERRIILRALGAEVYLA 121 (276)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~~ 121 (276)
+.+.++.+.+|...+|..|.+++..|+.+|.++++...... -..+.+.++.+|++-+..
T Consensus 142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~ 201 (341)
T cd08290 142 VKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLT 201 (341)
T ss_pred cccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEe
Confidence 34556666444445689999999999999998777665321 124556667788865443
No 290
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=49.01 E-value=1.4e+02 Score=24.66 Aligned_cols=55 Identities=18% Similarity=0.104 Sum_probs=36.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCH-HHHHHHHHCCCEEEEeCC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI-ERRIILRALGAEVYLADP 123 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~-~~~~~~~~~Ga~v~~~~~ 123 (276)
.+.+|+..+|.-|.++|......|..++++....... .....++..+.++..+..
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 59 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFAC 59 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 4558888999999999999888899877765432111 112334555666665553
No 291
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=48.96 E-value=1.1e+02 Score=25.04 Aligned_cols=62 Identities=10% Similarity=0.144 Sum_probs=39.3
Q ss_pred HHHHHHHHcCCCCCCCeEEEEeCCChHHH-HHHHHHHHcCCcEEEEecCCCC------HHHHHHHHHCCCEEE
Q 023814 54 SMIKDAEDKGLITPGKTVLIELTSGNTGI-GLAFIAASRGYKLIIIMPSTYS------IERRIILRALGAEVY 119 (276)
Q Consensus 54 ~~~~~a~~~g~~~~~~~~vv~~ssGN~g~-a~A~~a~~~g~~~~ivvp~~~~------~~~~~~~~~~Ga~v~ 119 (276)
.+...+.+.|. ++-+|+.-..|++. +.|..|...|++++++.....+ ..-++.|+..|++|+
T Consensus 128 ~L~~~L~~~~i----~~lii~G~~t~~CV~~T~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i~ 196 (196)
T cd01011 128 GLAEYLRERGI----DRVDVVGLATDYCVKATALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVLV 196 (196)
T ss_pred hHHHHHHHCCC----CEEEEEEecccHHHHHHHHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEEC
Confidence 33444455665 45456666666666 4556688899999888775332 233667777888763
No 292
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=48.93 E-value=38 Score=26.78 Aligned_cols=46 Identities=24% Similarity=0.241 Sum_probs=36.0
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeC
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 122 (276)
+|...+|+.|..++......|.+++++++... +.+. ..+.+++..+
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~---~~~~--~~~~~~~~~d 47 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPS---KAED--SPGVEIIQGD 47 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGG---GHHH--CTTEEEEESC
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCch---hccc--ccccccceee
Confidence 57778999999999999999999999998753 3333 5566666554
No 293
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=48.85 E-value=39 Score=25.92 Aligned_cols=35 Identities=34% Similarity=0.483 Sum_probs=22.3
Q ss_pred CCCCCeEEEEeCCChHHHHH--HHHHHHcCCcEEEEe
Q 023814 65 ITPGKTVLIELTSGNTGIGL--AFIAASRGYKLIIIM 99 (276)
Q Consensus 65 ~~~~~~~vv~~ssGN~g~a~--A~~a~~~g~~~~ivv 99 (276)
++|++.-|+.++|||+..-+ +..|+..|++++.+.
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 34667767777889876554 555999999998764
No 294
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=48.83 E-value=1.1e+02 Score=27.00 Aligned_cols=49 Identities=33% Similarity=0.374 Sum_probs=36.3
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEE
Q 023814 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (276)
Q Consensus 66 ~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v 118 (276)
.++.+.+|...+|..|.+++..|+.+|.+.+.+. . ..|.+.++.+|++-
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~---~~~~~~~~~~g~~~ 201 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-S---PKNFDLVKSLGADA 201 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-C---cccHHHHHhcCCCE
Confidence 4566756666678999999999999999876554 2 25667778899853
No 295
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=48.50 E-value=2e+02 Score=26.09 Aligned_cols=79 Identities=13% Similarity=0.030 Sum_probs=43.9
Q ss_pred CCCCChhhHHHHHHHHHHHHcCC--CCCCCeEEEEeCCChHHHHHHHHHHH-cCCcEEEEecCCCCHHHHHHHHHCCCEE
Q 023814 42 QPCSSVKDRIAYSMIKDAEDKGL--ITPGKTVLIELTSGNTGIGLAFIAAS-RGYKLIIIMPSTYSIERRIILRALGAEV 118 (276)
Q Consensus 42 ~ptGS~K~R~a~~~~~~a~~~g~--~~~~~~~vv~~ssGN~g~a~A~~a~~-~g~~~~ivvp~~~~~~~~~~~~~~Ga~v 118 (276)
.+.|....|-+..... ...+. +.++.-.++..+++.+|..++..+-. ..---.|++|.-+-+.-...++.+|+++
T Consensus 67 ~~~G~~~lR~aia~~~--~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~ 144 (396)
T PRK09257 67 PIEGLAAYRQAVQELL--FGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEV 144 (396)
T ss_pred CCCCCHHHHHHHHHHh--cCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcE
Confidence 3467777776544332 22221 13331112666666788777753322 1211345566544455567788899999
Q ss_pred EEeC
Q 023814 119 YLAD 122 (276)
Q Consensus 119 ~~~~ 122 (276)
+.++
T Consensus 145 v~v~ 148 (396)
T PRK09257 145 KTYP 148 (396)
T ss_pred EEEe
Confidence 9886
No 296
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=48.43 E-value=1.3e+02 Score=25.86 Aligned_cols=93 Identities=10% Similarity=0.103 Sum_probs=45.2
Q ss_pred HHHHHHHHHHc--CCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHH-HHHHHhCCCccc---cCCCCCCc
Q 023814 81 GIGLAFIAASR--GYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKG-EEILNRTPNGYI---LGQFENPA 154 (276)
Q Consensus 81 g~a~A~~a~~~--g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a-~~~~~~~~~~~~---~~~~~~~~ 154 (276)
|..+.++++.+ |.+..-+-..+.-..-++.....|.+|.++++. .+..+.+ ..+.++. +.-. .++|.++.
T Consensus 69 G~gvv~~~~~~~~~~~~~Rv~G~dl~~~ll~~~~~~~~~v~llG~~---~~v~~~a~~~l~~~y-~l~i~g~~~Gyf~~~ 144 (243)
T PRK03692 69 GISVVRSIRKKYPQAQVSRVAGADLWEALMARAGKEGTPVFLVGGK---PEVLAQTEAKLRTQW-NVNIVGSQDGYFTPE 144 (243)
T ss_pred CHHHHHHHHHhcCCCCCCeeChHHHHHHHHHHHHhcCCeEEEECCC---HHHHHHHHHHHHHHh-CCEEEEEeCCCCCHH
Confidence 45677777766 434111111111123344455678899999864 2333333 3344443 3221 23332211
Q ss_pred chHhhhhchHHHHHhhhC-CCcCEEEEecCCC
Q 023814 155 NPEIHYETTGPEIWNDSG-GKVDAFIAGIGTG 185 (276)
Q Consensus 155 ~~~~g~~t~~~Ei~~q~~-~~~d~vvvpvG~G 185 (276)
-. .+|.+++. ..+|.|+|+.|.-
T Consensus 145 ----e~----~~i~~~I~~s~~dil~VglG~P 168 (243)
T PRK03692 145 ----QR----QALFERIHASGAKIVTVAMGSP 168 (243)
T ss_pred ----HH----HHHHHHHHhcCCCEEEEECCCc
Confidence 11 23444442 2589999999864
No 297
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=48.27 E-value=1.2e+02 Score=29.84 Aligned_cols=52 Identities=25% Similarity=0.346 Sum_probs=40.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCC--------------C----HHHHHHHHHCCCEEEEe
Q 023814 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY--------------S----IERRIILRALGAEVYLA 121 (276)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~--------------~----~~~~~~~~~~Ga~v~~~ 121 (276)
..|+.-.+|-.|.+.|+..++.|+++++|-.... + ...++.++.+|.+++.-
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcC
Confidence 3488889999999999999999999999854431 1 12567788899988754
No 298
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=47.89 E-value=1.7e+02 Score=24.62 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=34.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHH-CCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRA-LGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~-~Ga~v~~~~ 122 (276)
++.+|+..+|..|.++|......|.+++++-.. ..+.+.+.. +|.++..+.
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~l~~~~~~~~~~~~ 57 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKS---AAGLQELEAAHGDAVVGVE 57 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhhcCCceEEEE
Confidence 455888889999999999998999987765332 233444433 455555443
No 299
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=47.89 E-value=27 Score=33.14 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=31.8
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCC
Q 023814 76 TSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (276)
Q Consensus 76 ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 123 (276)
|||-+|.++|.++...|-+++++.-.... . .-.|.+++.+..
T Consensus 280 SSGkmG~alA~aa~~~GA~VtlI~Gp~~~----~--~p~~v~~i~V~t 321 (475)
T PRK13982 280 SSGKQGFAIAAAAAAAGAEVTLISGPVDL----A--DPQGVKVIHVES 321 (475)
T ss_pred CchHHHHHHHHHHHHCCCcEEEEeCCcCC----C--CCCCceEEEecC
Confidence 89999999999999999999999843211 0 125667777763
No 300
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=47.71 E-value=2.6e+02 Score=26.81 Aligned_cols=91 Identities=19% Similarity=0.135 Sum_probs=65.0
Q ss_pred eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHH
Q 023814 33 RIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILR 112 (276)
Q Consensus 33 ~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~ 112 (276)
.+-++.|....|+|-=.-.+..+..-.+..| +.+|++.-+.++...+=.-..++|++.|+-.+-+=|.--+.+....++
T Consensus 68 a~Vf~~eg~R~Tf~~~~~ev~slAaGll~lG-L~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~ 146 (596)
T KOG1177|consen 68 AAVFDHEGIRLTFSEFVSEVESLAAGLLSLG-LKKGDRVGVWGPNSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLK 146 (596)
T ss_pred EEEEeeccchhhHHHHHHHHHHHHhhHHhhc-CCCCCEEEEecCChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHh
Confidence 4677888877666443334445544445555 566677555666556667778899999998877777776778888899
Q ss_pred HCCCEEEEeCCC
Q 023814 113 ALGAEVYLADPA 124 (276)
Q Consensus 113 ~~Ga~v~~~~~~ 124 (276)
..|.++.+.++.
T Consensus 147 k~~~k~l~~p~~ 158 (596)
T KOG1177|consen 147 KVGCKALFAPPQ 158 (596)
T ss_pred hcCeEEEEccch
Confidence 999999998853
No 301
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=47.70 E-value=1.6e+02 Score=26.32 Aligned_cols=55 Identities=33% Similarity=0.323 Sum_probs=35.8
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
+...++.+.+|. ..|..|..++..|+.+|.+.+++... +..+...++.+|++.+.
T Consensus 176 ~~~~~g~~vlV~-G~G~vG~~av~~Ak~~G~~vi~~~~~--~~~~~~~~~~~Ga~~~i 230 (357)
T PLN02514 176 GLKQSGLRGGIL-GLGGVGHMGVKIAKAMGHHVTVISSS--DKKREEALEHLGADDYL 230 (357)
T ss_pred ccCCCCCeEEEE-cccHHHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHhcCCcEEe
Confidence 444566664444 67889999999999999986555432 22333445679997443
No 302
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=47.69 E-value=1.8e+02 Score=25.24 Aligned_cols=81 Identities=14% Similarity=0.126 Sum_probs=45.6
Q ss_pred EEEEeCCCCCCC-ChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-----HHH
Q 023814 34 IAAKLEMMQPCS-SVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-----IER 107 (276)
Q Consensus 34 v~~K~E~~~ptG-S~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-----~~~ 107 (276)
|.+..|.-.-.| +|=.|+.. +...+.++|. .-.+++...++... ..-+..|+++..+ |+... ..-
T Consensus 2 i~ir~Da~~~iG~GHv~Rcl~-LA~~l~~~g~----~v~f~~~~~~~~~~---~~i~~~g~~v~~~-~~~~~~~~d~~~~ 72 (279)
T TIGR03590 2 ILFRADASSEIGLGHVMRCLT-LARALHAQGA----EVAFACKPLPGDLI---DLLLSAGFPVYEL-PDESSRYDDALEL 72 (279)
T ss_pred EEEEecCCccccccHHHHHHH-HHHHHHHCCC----EEEEEeCCCCHHHH---HHHHHcCCeEEEe-cCCCchhhhHHHH
Confidence 556666655444 67777643 2233345553 23344444434332 2346789987664 54321 134
Q ss_pred HHHHHHCCCEEEEeCC
Q 023814 108 RIILRALGAEVYLADP 123 (276)
Q Consensus 108 ~~~~~~~Ga~v~~~~~ 123 (276)
.+.++..+.+++.++.
T Consensus 73 ~~~l~~~~~d~vV~D~ 88 (279)
T TIGR03590 73 INLLEEEKFDILIVDH 88 (279)
T ss_pred HHHHHhcCCCEEEEcC
Confidence 5677778889999985
No 303
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.65 E-value=1.4e+02 Score=24.78 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=36.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC--HHHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~ 122 (276)
.+.+|+..+|--|.+++......|..+++....... ......++..|.++..+.
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVL 62 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEE
Confidence 355788888999999999888899987765533221 223445666777766554
No 304
>PRK07806 short chain dehydrogenase; Provisional
Probab=47.55 E-value=1.6e+02 Score=24.33 Aligned_cols=54 Identities=20% Similarity=0.172 Sum_probs=36.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCH--HHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--ERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~--~~~~~~~~~Ga~v~~~~ 122 (276)
++.+|+..+|.-|.+++......|.+++++....... .-...++..|.++..+.
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~ 62 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVG 62 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEE
Confidence 4558888889999999999888999988776532211 11233455677666554
No 305
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.28 E-value=2.2e+02 Score=25.75 Aligned_cols=112 Identities=20% Similarity=0.211 Sum_probs=71.8
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCc
Q 023814 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNG 144 (276)
Q Consensus 65 ~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 144 (276)
+.||.+ ++...-|--|.|++.-|+..|-.=+|=++ .++.|.+..+.+|+.=. +.
T Consensus 190 v~~Gst-vAVfGLG~VGLav~~Gaka~GAsrIIgvD--iN~~Kf~~ak~fGaTe~-iN---------------------- 243 (375)
T KOG0022|consen 190 VEPGST-VAVFGLGGVGLAVAMGAKAAGASRIIGVD--INPDKFEKAKEFGATEF-IN---------------------- 243 (375)
T ss_pred cCCCCE-EEEEecchHHHHHHHhHHhcCcccEEEEe--cCHHHHHHHHhcCccee-cC----------------------
Confidence 445555 78888888888888888888877666554 35666777777776522 21
Q ss_pred cccCCCCCCcchHhhhhchHHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCc
Q 023814 145 YILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA 213 (276)
Q Consensus 145 ~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~ 213 (276)
|-+-.. .+-.-|.|..++.+|+=|=++|+=.++.-....-+.-+-..-+|||.+.+..
T Consensus 244 ----p~d~~~-------~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~ 301 (375)
T KOG0022|consen 244 ----PKDLKK-------PIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQE 301 (375)
T ss_pred ----hhhccc-------cHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcc
Confidence 111000 1111233444566888888888877776655555666667888999888764
No 306
>PRK14031 glutamate dehydrogenase; Provisional
Probab=47.16 E-value=95 Score=29.23 Aligned_cols=53 Identities=13% Similarity=-0.044 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEec
Q 023814 48 KDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (276)
Q Consensus 48 K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp 100 (276)
=-||..+.+..+.+...+.....+|+....||-|..+|.....+|.+++++.+
T Consensus 207 Tg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 207 TGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred cHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 34677777776654332333334589999999999999999999999999877
No 307
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=47.14 E-value=1.5e+02 Score=25.99 Aligned_cols=50 Identities=26% Similarity=0.249 Sum_probs=35.2
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcC-CcEEEEecCCCCHHHHHHHHHCCCEE
Q 023814 65 ITPGKTVLIELTSGNTGIGLAFIAASRG-YKLIIIMPSTYSIERRIILRALGAEV 118 (276)
Q Consensus 65 ~~~~~~~vv~~ssGN~g~a~A~~a~~~g-~~~~ivvp~~~~~~~~~~~~~~Ga~v 118 (276)
+.++.+.+|.. .|..|.+++..|+.+| .+++++.. ++.+.+.++.+|++-
T Consensus 165 ~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~~g~~~ 215 (340)
T cd05284 165 LDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDR---SEEALKLAERLGADH 215 (340)
T ss_pred CCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHhCCcE
Confidence 44556655555 6669999999999999 67665533 346677788899753
No 308
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=47.09 E-value=2e+02 Score=25.21 Aligned_cols=53 Identities=34% Similarity=0.547 Sum_probs=37.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 117 (276)
+...+.++.+.+|. .+|..|.+++..|+.+|++++++.. +..+...++.+|++
T Consensus 153 ~~~~l~~g~~vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~---s~~~~~~~~~~g~~ 205 (337)
T cd08261 153 RRAGVTAGDTVLVV-GAGPIGLGVIQVAKARGARVIVVDI---DDERLEFARELGAD 205 (337)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEECC---CHHHHHHHHHhCCC
Confidence 34456677775555 5678899999999999998766533 35677777888864
No 309
>PRK07814 short chain dehydrogenase; Provisional
Probab=47.06 E-value=1.5e+02 Score=24.90 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=34.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~ 122 (276)
.+.+|+..+|--|.++|......|.+++++...... ....+.++..|.++..+.
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~ 65 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVA 65 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 456888899999999999888889987776553211 112233444566655443
No 310
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=46.95 E-value=1.2e+02 Score=27.33 Aligned_cols=52 Identities=17% Similarity=0.079 Sum_probs=33.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCC
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 123 (276)
|+..+++..+..++..+....-+-.|+++.-+-..-...++.+|++++.++.
T Consensus 94 I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 145 (374)
T PRK02610 94 ISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGR 145 (374)
T ss_pred EEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecC
Confidence 6666666777765555544332224666664555566778899999999874
No 311
>PLN02342 ornithine carbamoyltransferase
Probab=46.82 E-value=95 Score=28.21 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHHcCCcEEEEecCCC--CHHHHHHHHHCCC-EEEEeC
Q 023814 78 GNTGIGLAFIAASRGYKLIIIMPSTY--SIERRIILRALGA-EVYLAD 122 (276)
Q Consensus 78 GN~g~a~A~~a~~~g~~~~ivvp~~~--~~~~~~~~~~~Ga-~v~~~~ 122 (276)
.|...|++.+++++|+.++++.|+.- +...++.++..|. ++...+
T Consensus 204 ~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~ 251 (348)
T PLN02342 204 NNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITN 251 (348)
T ss_pred chhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEc
Confidence 58999999999999999999999864 3344555666674 665553
No 312
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=46.77 E-value=1.6e+02 Score=24.07 Aligned_cols=54 Identities=30% Similarity=0.292 Sum_probs=37.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHH-HHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIE-RRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~-~~~~~~~~Ga~v~~~~ 122 (276)
.+.+|+..+|..|..++......|..++++........ ....++..|.++..+.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLV 60 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEE
Confidence 35588889999999999998888999766654422221 2344556787777654
No 313
>PRK10490 sensor protein KdpD; Provisional
Probab=46.59 E-value=3.2e+02 Score=28.25 Aligned_cols=105 Identities=15% Similarity=0.038 Sum_probs=58.1
Q ss_pred EEEeCCChHHH----HHHHHHHHcCCcEEEEecCCC-----CH-------HHHHHHHHCCCEEEEeCCCCChhHHHHHHH
Q 023814 72 LIELTSGNTGI----GLAFIAASRGYKLIIIMPSTY-----SI-------ERRIILRALGAEVYLADPAVGFEGFVKKGE 135 (276)
Q Consensus 72 vv~~ssGN~g~----a~A~~a~~~g~~~~ivvp~~~-----~~-------~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~ 135 (276)
+|+-+++-++. .-+..|.+++-+.+++.-++. +. ..++..+.+||+++.+.+. +. .+.-.
T Consensus 254 LV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~-dv---a~~i~ 329 (895)
T PRK10490 254 LLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDP-AE---EKAVL 329 (895)
T ss_pred EEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC-CH---HHHHH
Confidence 44445555543 334556777888775543221 11 1244667799999888753 23 33444
Q ss_pred HHHHhCCC-ccccCCCCCCcchHhhhhchHHHHHhhhCCCcCEEEEecC
Q 023814 136 EILNRTPN-GYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIG 183 (276)
Q Consensus 136 ~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG 183 (276)
+++++++- ...+....... + ....++...+++.. +.+|..++|..
T Consensus 330 ~~A~~~~vt~IViG~s~~~~-~-~~~~s~~~~l~r~~-~~idi~iv~~~ 375 (895)
T PRK10490 330 RYAREHNLGKIIIGRRASRR-W-WRRESFADRLARLG-PDLDLVIVALD 375 (895)
T ss_pred HHHHHhCCCEEEECCCCCCC-C-ccCCCHHHHHHHhC-CCCCEEEEeCC
Confidence 56666531 23333322211 2 23457888888887 56888888744
No 314
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=46.53 E-value=1.7e+02 Score=24.77 Aligned_cols=50 Identities=24% Similarity=0.264 Sum_probs=35.2
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCc-EEEEecCCCCHHHHHHHHHCC
Q 023814 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYK-LIIIMPSTYSIERRIILRALG 115 (276)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~-~~ivvp~~~~~~~~~~~~~~G 115 (276)
...+.++.+.+|. ..|..|.++...|+.+|.+ ++++. .+.++.+.++.+|
T Consensus 92 ~~~~~~g~~vlI~-g~g~vg~~~i~~a~~~g~~~vi~~~---~~~~~~~~~~~~g 142 (277)
T cd08255 92 DAEPRLGERVAVV-GLGLVGLLAAQLAKAAGAREVVGVD---PDAARRELAEALG 142 (277)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEC---CCHHHHHHHHHcC
Confidence 4556677774555 5788999999999999988 44432 2556667777787
No 315
>PRK06701 short chain dehydrogenase; Provisional
Probab=46.23 E-value=2e+02 Score=24.91 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=38.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC--HHHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~ 122 (276)
.+.+|+..+|.-|.++|......|.+++++...... ......++..|.++..+.
T Consensus 47 k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 102 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIP 102 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEE
Confidence 355888889999999999988899998776554322 223345566787776654
No 316
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=46.18 E-value=1.7e+02 Score=24.24 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=35.7
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeC
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~ 122 (276)
-+|+..+|.-|.++|......|.+++++-..... ....+.++..|.++..+.
T Consensus 3 ~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 55 (254)
T TIGR02415 3 ALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYK 55 (254)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 4788889999999999988999987666443211 122345666787776554
No 317
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=45.59 E-value=1.5e+02 Score=24.82 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=24.8
Q ss_pred CeEEEEeCC--ChHHHHHHHHHHHcCCcEEEEec
Q 023814 69 KTVLIELTS--GNTGIGLAFIAASRGYKLIIIMP 100 (276)
Q Consensus 69 ~~~vv~~ss--GN~g~a~A~~a~~~g~~~~ivvp 100 (276)
+..+|+..+ +.-|.++|..-.+.|.++++.-.
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 455777766 68999999998889998777644
No 318
>PRK07677 short chain dehydrogenase; Provisional
Probab=45.55 E-value=1.8e+02 Score=24.29 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=34.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeC
Q 023814 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (276)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~ 122 (276)
+.+|+..+|.-|.++|......|..++++...... ....+.++..+.+++.+.
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 56 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQ 56 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 45888889999999999988899976665433211 112223444566665554
No 319
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=45.36 E-value=2.3e+02 Score=25.48 Aligned_cols=51 Identities=22% Similarity=0.148 Sum_probs=29.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCC
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 123 (276)
|+..+++..+..++..+- ..-.-.|++|.-+-..-....+.+|++++.++-
T Consensus 94 vi~t~G~~~~l~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~ 144 (383)
T TIGR03540 94 VLSLIGSKEGIAHIPLAF-VNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPL 144 (383)
T ss_pred EEECCCcHHHHHHHHHHh-CCCCCEEEEeCCCCcchHHHHHhcCCEEEEEec
Confidence 555555566666654432 232234555543333334457789999998764
No 320
>PRK07550 hypothetical protein; Provisional
Probab=45.36 E-value=2.3e+02 Score=25.52 Aligned_cols=76 Identities=18% Similarity=0.164 Sum_probs=43.7
Q ss_pred CCChhhHHHHHHHHHHHHcCC-CCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeC
Q 023814 44 CSSVKDRIAYSMIKDAEDKGL-ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (276)
Q Consensus 44 tGS~K~R~a~~~~~~a~~~g~-~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 122 (276)
.|.-..|.+..-... ...|. +.++ .|+..++++.+..++..+- .+-.-.|++|.-.-..-...++..|++++.++
T Consensus 67 ~G~~~lr~~ia~~~~-~~~g~~~~~~--~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 142 (386)
T PRK07550 67 EGLPELREAYAAHYS-RLYGAAISPE--QVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYLP 142 (386)
T ss_pred CCCHHHHHHHHHHHH-HHhCCCCCcc--eEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEEe
Confidence 566666755443221 12232 2332 3676666677776655443 34445577776444444556788999999887
Q ss_pred C
Q 023814 123 P 123 (276)
Q Consensus 123 ~ 123 (276)
.
T Consensus 143 ~ 143 (386)
T PRK07550 143 C 143 (386)
T ss_pred c
Confidence 4
No 321
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=45.31 E-value=1.4e+02 Score=27.25 Aligned_cols=95 Identities=15% Similarity=0.256 Sum_probs=40.0
Q ss_pred cEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCC--hhHHHHHHHHHHHhCCCccc-cCCC-CCCcchHhhhhchHHHHHh
Q 023814 94 KLIIIMPSTYSIERRIILRALGAEVYLADPAVG--FEGFVKKGEEILNRTPNGYI-LGQF-ENPANPEIHYETTGPEIWN 169 (276)
Q Consensus 94 ~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~--~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~~~~g~~t~~~Ei~~ 169 (276)
|..++.-++.-..--+.++.+|-++..+.+... .....+...+..++.+-.+. .+.. .||..- .-.-+.++++
T Consensus 4 p~~i~fG~g~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~---~v~~~~~~~~ 80 (380)
T cd08185 4 PTKIVFGAGKLNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTT---TVMEGAALAR 80 (380)
T ss_pred CCeEEECcCHHHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHH---HHHHHHHHHH
Confidence 444444444333333445556666665553222 12334444444444311111 1111 133321 1112223444
Q ss_pred hhCCCcCEEEEecCCCcchHHHHHHH
Q 023814 170 DSGGKVDAFIAGIGTGGTVTGAGRFL 195 (276)
Q Consensus 170 q~~~~~d~vvvpvG~Gg~~~Gi~~~~ 195 (276)
+. ++| +|+++|+|+.+ =+++++
T Consensus 81 ~~--~~D-~IiavGGGS~i-D~aK~i 102 (380)
T cd08185 81 EE--GCD-FVVGLGGGSSM-DTAKAI 102 (380)
T ss_pred Hc--CCC-EEEEeCCccHH-HHHHHH
Confidence 43 467 56788877654 444443
No 322
>PLN00175 aminotransferase family protein; Provisional
Probab=45.29 E-value=2.5e+02 Score=25.83 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=31.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCC
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 123 (276)
|+..+++..+..++..+- +.-.-.|++++-.-..-...++.+|++++.++-
T Consensus 118 I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~ 168 (413)
T PLN00175 118 VTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKTVTL 168 (413)
T ss_pred EEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCchhHHHHHHHcCCEEEEEEC
Confidence 666666677766655543 333334555543444456677889999998863
No 323
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=45.26 E-value=99 Score=28.37 Aligned_cols=58 Identities=22% Similarity=0.208 Sum_probs=38.3
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCC--cEEEEecCCCCHHHHHHHHHC--------CCEEEEeC
Q 023814 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGY--KLIIIMPSTYSIERRIILRAL--------GAEVYLAD 122 (276)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~--~~~ivvp~~~~~~~~~~~~~~--------Ga~v~~~~ 122 (276)
..++++++.+|...+|-.|...+..|+.+|. ..++++ +.++.|++.++.+ |++...++
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~--~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~ 238 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVT--DVNDERLARAQRLFPPEAASRGIELLYVN 238 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEE--cCCHHHHHHHHHhccccccccCceEEEEC
Confidence 4466777755555679999999889999876 223333 2356777777776 77644444
No 324
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=45.25 E-value=1.4e+02 Score=24.76 Aligned_cols=54 Identities=28% Similarity=0.287 Sum_probs=36.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC--HHHHHHHHHCCCEEEEeCC
Q 023814 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADP 123 (276)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~ 123 (276)
+.+|+..+|.-|.++|..-.+.|..+++....+.. ......++..+.+++.+..
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAG 59 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEe
Confidence 44788888999999999988889887665433221 1223456667777766543
No 325
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=45.12 E-value=1.2e+02 Score=26.88 Aligned_cols=45 Identities=20% Similarity=0.284 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHHHcCCcEEEEecCCCC--HHHHHH----HHHCCCEEEEeC
Q 023814 78 GNTGIGLAFIAASRGYKLIIIMPSTYS--IERRII----LRALGAEVYLAD 122 (276)
Q Consensus 78 GN~g~a~A~~a~~~g~~~~ivvp~~~~--~~~~~~----~~~~Ga~v~~~~ 122 (276)
+|...|++.+++++|+.++++.|+... ....+. .+..|+++...+
T Consensus 158 ~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 158 NNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred CchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 689999999999999999999987542 333333 345788877664
No 326
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=45.04 E-value=1.8e+02 Score=24.20 Aligned_cols=54 Identities=26% Similarity=0.135 Sum_probs=35.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~ 122 (276)
+..+|+..+|..|.++|......|.+++++-..... ......++..+.++..+.
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~ 64 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAP 64 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEe
Confidence 355888899999999999988889877765432111 112234555566666544
No 327
>PRK09414 glutamate dehydrogenase; Provisional
Probab=44.58 E-value=1.1e+02 Score=28.91 Aligned_cols=53 Identities=13% Similarity=-0.063 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEec
Q 023814 48 KDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (276)
Q Consensus 48 K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp 100 (276)
--||..+.+..+.+.........+|+....||-|..+|.....+|.+++.+..
T Consensus 211 Tg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 211 TGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred ccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 34677777777665433333334599999999999999999888888877755
No 328
>PRK13243 glyoxylate reductase; Reviewed
Probab=44.31 E-value=1.8e+02 Score=26.02 Aligned_cols=96 Identities=23% Similarity=0.246 Sum_probs=58.7
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCC
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQF 150 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (276)
+|..-..|+.|.++|..++.+|++++++-+.. ... ....+|... . +++ ++.++. +...++
T Consensus 152 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~-~~~---~~~~~~~~~--~----~l~-------ell~~a-DiV~l~-- 211 (333)
T PRK13243 152 TIGIIGFGRIGQAVARRAKGFGMRILYYSRTR-KPE---AEKELGAEY--R----PLE-------ELLRES-DFVSLH-- 211 (333)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCEEEEECCCC-Chh---hHHHcCCEe--c----CHH-------HHHhhC-CEEEEe--
Confidence 47777889999999999999999987765432 221 123345421 1 122 223333 333221
Q ss_pred CCCcchHhhhhchHHHHHhhhCCCcCEEEEecCCCcchHH
Q 023814 151 ENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTG 190 (276)
Q Consensus 151 ~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~Gg~~~G 190 (276)
-|...+ -...+..|.++++ +++.+++-++.|+.+--
T Consensus 212 -lP~t~~-T~~~i~~~~~~~m--k~ga~lIN~aRg~~vd~ 247 (333)
T PRK13243 212 -VPLTKE-TYHMINEERLKLM--KPTAILVNTARGKVVDT 247 (333)
T ss_pred -CCCChH-HhhccCHHHHhcC--CCCeEEEECcCchhcCH
Confidence 223332 2344666888888 47999999999998743
No 329
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=44.16 E-value=1.9e+02 Score=24.21 Aligned_cols=54 Identities=20% Similarity=0.145 Sum_probs=37.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC--HHHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~ 122 (276)
++-+|+..+|.-|.++|....+.|..++++.....+ ....+.++..|.++..+.
T Consensus 8 k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~ 63 (261)
T PRK08936 8 KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVK 63 (261)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 455888899999999999988999987776554322 222345566687766554
No 330
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=44.06 E-value=1.2e+02 Score=27.34 Aligned_cols=51 Identities=22% Similarity=0.253 Sum_probs=34.9
Q ss_pred EEEeCCC--hHHHHHHHHHHHcCCcEEEEecCCCC--HHHHHH----HHHCCCEEEEeC
Q 023814 72 LIELTSG--NTGIGLAFIAASRGYKLIIIMPSTYS--IERRII----LRALGAEVYLAD 122 (276)
Q Consensus 72 vv~~ssG--N~g~a~A~~a~~~g~~~~ivvp~~~~--~~~~~~----~~~~Ga~v~~~~ 122 (276)
|+-...+ |.+.|++..++++|+.++++.|+... +..++. .+..|.++..++
T Consensus 158 va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (331)
T PRK02102 158 LAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITE 216 (331)
T ss_pred EEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEc
Confidence 4444443 79999999999999999999998542 223322 244788877664
No 331
>CHL00194 ycf39 Ycf39; Provisional
Probab=44.00 E-value=1e+02 Score=27.12 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=26.8
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecC
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~ 101 (276)
.+|+..+|..|..++......|.++++++..
T Consensus 3 IlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 3 LLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 4788899999999999988889998888764
No 332
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=43.87 E-value=1.1e+02 Score=28.81 Aligned_cols=50 Identities=26% Similarity=0.363 Sum_probs=38.7
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCC---------C---------HHHHHHHHHCCCEEEE
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY---------S---------IERRIILRALGAEVYL 120 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~---------~---------~~~~~~~~~~Ga~v~~ 120 (276)
.|+.-.+|-.|.+.|..+++.|+++++|-.... + ....+.++.+|.+++.
T Consensus 143 ~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 210 (467)
T TIGR01318 143 RVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL 210 (467)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC
Confidence 488899999999999999999999888843321 1 1345678889998764
No 333
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=43.86 E-value=69 Score=29.62 Aligned_cols=44 Identities=16% Similarity=0.210 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHcCCcEEEEecCCC--CHHHHHH----HHHCCCEEEEeC
Q 023814 79 NTGIGLAFIAASRGYKLIIIMPSTY--SIERRII----LRALGAEVYLAD 122 (276)
Q Consensus 79 N~g~a~A~~a~~~g~~~~ivvp~~~--~~~~~~~----~~~~Ga~v~~~~ 122 (276)
|.+.|++.+++++|+.++++.|+.. .+..++. .+..|+++...+
T Consensus 205 ~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~ 254 (395)
T PRK07200 205 SVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVN 254 (395)
T ss_pred hHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 7789999999999999999999854 3433333 456788877664
No 334
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=43.82 E-value=1.9e+02 Score=24.13 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=35.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCH-HHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI-ERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~-~~~~~~~~~Ga~v~~~~ 122 (276)
++.+|+..+|.-|.+++......|.+++++....... .-...++..|.+++.+.
T Consensus 12 k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~ 66 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACR 66 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 4568888999999999998888899877765432111 11234455677665544
No 335
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=43.64 E-value=2e+02 Score=25.23 Aligned_cols=51 Identities=29% Similarity=0.449 Sum_probs=35.9
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcC-CcEEEEecCCCCHHHHHHHHHCCCE
Q 023814 63 GLITPGKTVLIELTSGNTGIGLAFIAASRG-YKLIIIMPSTYSIERRIILRALGAE 117 (276)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g-~~~~ivvp~~~~~~~~~~~~~~Ga~ 117 (276)
..+.++.+.+|. ..|..|.+++..|+.+| .++++ +. .+..|...++.+|++
T Consensus 162 ~~~~~g~~vlI~-g~g~~g~~~~~~a~~~G~~~v~~-~~--~~~~~~~~~~~~g~~ 213 (345)
T cd08286 162 GKVKPGDTVAIV-GAGPVGLAALLTAQLYSPSKIIM-VD--LDDNRLEVAKKLGAT 213 (345)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEE-Ec--CCHHHHHHHHHhCCC
Confidence 345566675664 56999999999999999 55444 32 355677777888984
No 336
>PRK08264 short chain dehydrogenase; Validated
Probab=43.62 E-value=1.4e+02 Score=24.62 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=26.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCC-cEEEEecC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGY-KLIIIMPS 101 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~-~~~ivvp~ 101 (276)
.+.+|+..+|.-|.++|......|. +++++...
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 3558888999999999999999998 77666543
No 337
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=43.55 E-value=1.2e+02 Score=27.93 Aligned_cols=55 Identities=29% Similarity=0.408 Sum_probs=37.7
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChHHHHHHHHHHHcC--CcEEEEec
Q 023814 44 CSSVKDRIAYSMIKDAEDKGLITPGKTVLIEL--TSGNTGIGLAFIAASRG--YKLIIIMP 100 (276)
Q Consensus 44 tGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~--ssGN~g~a~A~~a~~~g--~~~~ivvp 100 (276)
-|-.|.|-|..++.++.++|++. |..-+++. ++|-++.|+|. |+.+| .|++...-
T Consensus 27 VGQ~~AReAagiiv~mIk~~K~a-Gr~iLiaGppGtGKTAlA~~i-a~eLG~~~PF~~isg 85 (398)
T PF06068_consen 27 VGQEKAREAAGIIVDMIKEGKIA-GRAILIAGPPGTGKTALAMAI-AKELGEDVPFVSISG 85 (398)
T ss_dssp ES-HHHHHHHHHHHHHHHTT--T-T-EEEEEE-TTSSHHHHHHHH-HHHCTTTS-EEEEEG
T ss_pred cChHHHHHHHHHHHHHHhccccc-CcEEEEeCCCCCCchHHHHHH-HHHhCCCCCeeEccc
Confidence 47889999999999999998754 33433433 77888888776 67787 77776654
No 338
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=43.20 E-value=1.2e+02 Score=27.34 Aligned_cols=45 Identities=27% Similarity=0.419 Sum_probs=32.4
Q ss_pred ChHHHHHHHHHHHcCCcEEEEecCCC--CHHHHHHHH----HCCCEEEEeC
Q 023814 78 GNTGIGLAFIAASRGYKLIIIMPSTY--SIERRIILR----ALGAEVYLAD 122 (276)
Q Consensus 78 GN~g~a~A~~a~~~g~~~~ivvp~~~--~~~~~~~~~----~~Ga~v~~~~ 122 (276)
.|.+.|++..++++|+.++++.|+.- +...+..++ ..|.++....
T Consensus 164 ~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (338)
T PRK02255 164 TQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTD 214 (338)
T ss_pred chHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEc
Confidence 58899999999999999999999854 333333333 3688877664
No 339
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=43.07 E-value=1.5e+02 Score=27.21 Aligned_cols=98 Identities=17% Similarity=0.176 Sum_probs=45.5
Q ss_pred CcEEEEecCCCCHHHHHHHHHCCCE-EE-EeCCCCChhHHHHHHHHHHHhCCCc--cccCCCCCCcchHhhhhchHHHHH
Q 023814 93 YKLIIIMPSTYSIERRIILRALGAE-VY-LADPAVGFEGFVKKGEEILNRTPNG--YILGQFENPANPEIHYETTGPEIW 168 (276)
Q Consensus 93 ~~~~ivvp~~~~~~~~~~~~~~Ga~-v~-~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~g~~t~~~Ei~ 168 (276)
++..++.-.+.-..-.+.+..+|.+ +. .+++...-....+...+..++.+-. .|-.--.||.. .-..-+.|.+
T Consensus 6 ~p~~i~fG~g~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~---~~v~~~~~~~ 82 (377)
T COG1454 6 LPTEILFGRGSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTI---ETVEAGAEVA 82 (377)
T ss_pred cCceEEecCChHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCH---HHHHHHHHHH
Confidence 3444555555444555555556643 32 3333211112333444444443211 22222224443 2344566777
Q ss_pred hhhCCCcCEEEEecCCCcchHHHHHHHHh
Q 023814 169 NDSGGKVDAFIAGIGTGGTVTGAGRFLKE 197 (276)
Q Consensus 169 ~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~ 197 (276)
++. ++|. |+++|+|+.+ -++++..-
T Consensus 83 ~~~--~~D~-iIalGGGS~~-D~AK~i~~ 107 (377)
T COG1454 83 REF--GPDT-IIALGGGSVI-DAAKAIAL 107 (377)
T ss_pred Hhc--CCCE-EEEeCCccHH-HHHHHHHH
Confidence 776 4785 5678876654 55665543
No 340
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=42.80 E-value=1.1e+02 Score=28.29 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=13.6
Q ss_pred HHHHHhhhCCCcCEEEEecCCCcch
Q 023814 164 GPEIWNDSGGKVDAFIAGIGTGGTV 188 (276)
Q Consensus 164 ~~Ei~~q~~~~~d~vvvpvG~Gg~~ 188 (276)
+.+++++. ++| +|+++|+|+.+
T Consensus 98 ~~~~~r~~--~~D-~IiavGGGS~i 119 (395)
T PRK15454 98 AVAQLRES--GCD-GVIAFGGGSVL 119 (395)
T ss_pred HHHHHHhc--CcC-EEEEeCChHHH
Confidence 33455553 467 66788887754
No 341
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=42.70 E-value=1.9e+02 Score=23.85 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=35.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHH-HHHHHHCCCEEEEeC
Q 023814 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIER-RIILRALGAEVYLAD 122 (276)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~-~~~~~~~Ga~v~~~~ 122 (276)
+.+|+..+|-.|.+++....+.|.+++++........+ ...++..+.++..+.
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 56 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLV 56 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 45888889999999999988889987777654322212 223444566766554
No 342
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=42.65 E-value=2e+02 Score=24.02 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=35.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeCC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (276)
.+.+|+..+|--|.++|......|.+++++...... ......++..+.+++.+..
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~ 68 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAA 68 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 455888888999999998888889987665443211 1112334556777666543
No 343
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=42.59 E-value=98 Score=28.78 Aligned_cols=94 Identities=21% Similarity=0.223 Sum_probs=55.4
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCcc
Q 023814 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGY 145 (276)
Q Consensus 66 ~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~ 145 (276)
..|++ |+....|+-|+.+|..++.+|.+++++ ..+ +.+.......|+++. + .++. .+. ..+
T Consensus 193 l~Gk~-VvViG~G~IG~~vA~~ak~~Ga~ViV~-d~d--p~r~~~A~~~G~~v~--~----leea-------l~~--aDV 253 (406)
T TIGR00936 193 IAGKT-VVVAGYGWCGKGIAMRARGMGARVIVT-EVD--PIRALEAAMDGFRVM--T----MEEA-------AKI--GDI 253 (406)
T ss_pred CCcCE-EEEECCCHHHHHHHHHHhhCcCEEEEE-eCC--hhhHHHHHhcCCEeC--C----HHHH-------Hhc--CCE
Confidence 34555 999999999999999999999986554 322 234444455677543 1 2221 122 223
Q ss_pred ccCCCCCCcchHhhhhchHHHHHhhhCCCcCEEEEecCCCcc
Q 023814 146 ILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGT 187 (276)
Q Consensus 146 ~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~Gg~ 187 (276)
++.--. ....+..+.+..+ ++..+++-+|.+..
T Consensus 254 VItaTG-------~~~vI~~~~~~~m--K~GailiN~G~~~~ 286 (406)
T TIGR00936 254 FITATG-------NKDVIRGEHFENM--KDGAIVANIGHFDV 286 (406)
T ss_pred EEECCC-------CHHHHHHHHHhcC--CCCcEEEEECCCCc
Confidence 222111 1223444566666 35778888888765
No 344
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=42.57 E-value=1.3e+02 Score=28.20 Aligned_cols=50 Identities=22% Similarity=0.198 Sum_probs=38.9
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCC--------------C----HHHHHHHHHCCCEEEE
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY--------------S----IERRIILRALGAEVYL 120 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~--------------~----~~~~~~~~~~Ga~v~~ 120 (276)
.|+.-.+|-.|.+.|..+++.|.++++|-.... + ...++.++.+|.+++.
T Consensus 145 ~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 145 KVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 488889999999999999999999999864321 1 1245667889988764
No 345
>PRK07985 oxidoreductase; Provisional
Probab=42.40 E-value=2.2e+02 Score=24.70 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=35.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCC-C-H-HHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-S-I-ERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~-~-~-~~~~~~~~~Ga~v~~~~ 122 (276)
++.+|+..+|.-|.++|......|.+++++-.... . . ...+.++..|.+++.+.
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLP 106 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEE
Confidence 35588889999999999998899998876543211 1 1 11223445677765544
No 346
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=42.05 E-value=2.3e+02 Score=24.55 Aligned_cols=56 Identities=30% Similarity=0.431 Sum_probs=38.9
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEe
Q 023814 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (276)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 121 (276)
.+.+.++.+.+|. .+|..|.+++..|+.+|.+++++.+ +..+.+.++.+|++-+..
T Consensus 160 ~~~~~~~~~vli~-g~g~vG~~~~~la~~~G~~V~~~~~---s~~~~~~~~~~g~~~~~~ 215 (338)
T cd08254 160 AGEVKPGETVLVI-GLGGLGLNAVQIAKAMGAAVIAVDI---KEEKLELAKELGADEVLN 215 (338)
T ss_pred ccCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhCCCEEEc
Confidence 4446666675554 5688899999999999988554433 456677778888864433
No 347
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=41.98 E-value=81 Score=28.94 Aligned_cols=54 Identities=22% Similarity=0.276 Sum_probs=44.5
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCC
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (276)
..+..+||..+..+|+-|-..|=.-.|++|.-+.......+...||+.+++|-+
T Consensus 51 ~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid 104 (374)
T COG0399 51 YAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDID 104 (374)
T ss_pred eEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecC
Confidence 377788888888888875446666789999999999999999999999999853
No 348
>PLN02591 tryptophan synthase
Probab=41.95 E-value=2.3e+02 Score=24.42 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=13.5
Q ss_pred HHHHHHHHcCCcEEEEecCCCCHHHHHHHHH
Q 023814 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRA 113 (276)
Q Consensus 83 a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~ 113 (276)
-+...|+.+|+..+.+++.+++..++.++..
T Consensus 122 ~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~ 152 (250)
T PLN02591 122 ALRAEAAKNGIELVLLTTPTTPTERMKAIAE 152 (250)
T ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH
Confidence 3334444444444444444444444443333
No 349
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=41.94 E-value=2.2e+02 Score=24.22 Aligned_cols=55 Identities=31% Similarity=0.478 Sum_probs=36.7
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
...+.++.+.+|...+|..|.+++..++.+|.+++++... ..+.+.++.+|++..
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 188 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASS---EEKLALARALGADHV 188 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCC---HHHHHHHHHcCCcee
Confidence 3445566665565566899999999999999885554332 345566666776433
No 350
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=41.89 E-value=32 Score=30.77 Aligned_cols=55 Identities=27% Similarity=0.388 Sum_probs=33.5
Q ss_pred EEEEeCCChHHHHHHHHHHH----cCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhC
Q 023814 71 VLIELTSGNTGIGLAFIAAS----RGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRT 141 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~----~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 141 (276)
-+++...=|++-|+|++|.. .|=...+|+|.+. .+.....|.++.+.|.+++++.
T Consensus 80 illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH----------------~I~d~~af~~av~~A~~~A~~g 138 (333)
T COG0836 80 IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDH----------------VIADEEAFLNAVKKAEKAAEEG 138 (333)
T ss_pred eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcc----------------eeccHHHHHHHHHHHHHHHHcC
Confidence 46777777888888777644 3433566666541 2221123667777888877763
No 351
>PRK05693 short chain dehydrogenase; Provisional
Probab=41.89 E-value=2.2e+02 Score=24.15 Aligned_cols=51 Identities=27% Similarity=0.198 Sum_probs=37.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCC
Q 023814 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (276)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 123 (276)
+.+|+..+|-.|.++|......|.+++++... ..+.+.+...+.+.+.++-
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~Dl 53 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARK---AEDVEALAAAGFTAVQLDV 53 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCeEEEeeC
Confidence 34788888999999999988899987776543 3455556666777666664
No 352
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=41.77 E-value=2.2e+02 Score=29.97 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=27.9
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecC
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~ 101 (276)
.|+.-.+|-.|.+.|...++.|++++||=..
T Consensus 432 kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~ 462 (1006)
T PRK12775 432 KVAICGSGPAGLAAAADLVKYGVDVTVYEAL 462 (1006)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 4888899999999999999999999999543
No 353
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=41.60 E-value=2.4e+02 Score=24.67 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=30.6
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCE
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 117 (276)
+++....|+.|.++|..++.+|.+++++-+. ..+......+|.+
T Consensus 153 ~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~---~~~~~~~~~~g~~ 196 (287)
T TIGR02853 153 NVMVLGFGRTGMTIARTFSALGARVFVGARS---SADLARITEMGLI 196 (287)
T ss_pred EEEEEcChHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCe
Confidence 3777788999999999999999876665442 2344445556654
No 354
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.52 E-value=1.9e+02 Score=24.28 Aligned_cols=55 Identities=15% Similarity=0.084 Sum_probs=35.3
Q ss_pred CeEEEEeCC--ChHHHHHHHHHHHcCCcEEEEec----CCC----CH----HHHHHHHHCCCEEEEeCC
Q 023814 69 KTVLIELTS--GNTGIGLAFIAASRGYKLIIIMP----STY----SI----ERRIILRALGAEVYLADP 123 (276)
Q Consensus 69 ~~~vv~~ss--GN~g~a~A~~a~~~g~~~~ivvp----~~~----~~----~~~~~~~~~Ga~v~~~~~ 123 (276)
++.+|+..+ +.-|.++|......|.++++... .+. .. ...+.++..|.+++.+..
T Consensus 7 k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 75 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMEL 75 (256)
T ss_pred cEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEc
Confidence 455777766 48999999998889998776521 110 11 123446677888876653
No 355
>PRK09291 short chain dehydrogenase; Provisional
Probab=41.20 E-value=1.2e+02 Score=25.32 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=27.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEecC
Q 023814 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (276)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~ 101 (276)
+.+|+..+|..|.+++......|.+++++...
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~ 35 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQI 35 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45889999999999999999999998887664
No 356
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=40.92 E-value=2.2e+02 Score=24.08 Aligned_cols=121 Identities=20% Similarity=0.095 Sum_probs=63.6
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHC---CCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchH
Q 023814 81 GIGLAFIAASRGYKLIIIMPSTYSIERRIILRAL---GAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPE 157 (276)
Q Consensus 81 g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~---Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 157 (276)
|.+.|.+.+.+|+++.++-++..+...+..+..+ |.+|....+.... ......+.+..-....+..|.+-...
T Consensus 86 G~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~r---~~l~~~L~~~G~~v~~~~~Y~~~~~~- 161 (248)
T COG1587 86 GEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGGR---EVLEEKLEERGAEVREVEVYRTEPPP- 161 (248)
T ss_pred cHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCch---HHHHHHHHhCCCEEEEEeeeeecCCC-
Confidence 5577888999999998876666666777777766 6777766543221 12222333321122334444332221
Q ss_pred hhhhchHHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCC----CcEEEEEecC
Q 023814 158 IHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIEPS 210 (276)
Q Consensus 158 ~g~~t~~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~----~~~vigVe~~ 210 (276)
+. ...++.......+|.|+...+ .++-.+...+....+ +.+++.+-|.
T Consensus 162 --~~-~~~~~~~~~~~~~d~v~ftS~--~~v~~~~~~~~~~~~~~~~~~~v~~IG~~ 213 (248)
T COG1587 162 --LD-EATLIELLKLGEVDAVVFTSS--SAVRALLALAPESGIEFLERKRVASIGPR 213 (248)
T ss_pred --cc-HHHHHHHHHhCCCCEEEEeCH--HHHHHHHHHccccchhHhhCceEEEecHH
Confidence 22 111111111246899988853 555555555554443 2455555443
No 357
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=40.91 E-value=2.8e+02 Score=25.18 Aligned_cols=102 Identities=17% Similarity=0.159 Sum_probs=57.0
Q ss_pred EEEecCCCCHHHHHHHHHCCCEEEEeCCC--------CCh-hHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHH
Q 023814 96 IIIMPSTYSIERRIILRALGAEVYLADPA--------VGF-EGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPE 166 (276)
Q Consensus 96 ~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~--------~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (276)
.++.|.. +..++...-.+||+.+.++.. ..| .+-++++.+++.+.+..+|+-- |.........++ .+
T Consensus 8 ell~pag-~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~--N~~~~~~~~~~~-~~ 83 (347)
T COG0826 8 ELLAPAG-NLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAV--NTLLHNDELETL-ER 83 (347)
T ss_pred eeecCCC-CHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEe--ccccccchhhHH-HH
Confidence 3445554 344555555689998888743 012 2346777788888754455422 221111122222 23
Q ss_pred HHhhh-CCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEE
Q 023814 167 IWNDS-GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGI 207 (276)
Q Consensus 167 i~~q~-~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigV 207 (276)
.++++ .-.+|.|++. =.|+....++.+|+.++++-
T Consensus 84 ~l~~l~e~GvDaviv~------Dpg~i~l~~e~~p~l~ih~S 119 (347)
T COG0826 84 YLDRLVELGVDAVIVA------DPGLIMLARERGPDLPIHVS 119 (347)
T ss_pred HHHHHHHcCCCEEEEc------CHHHHHHHHHhCCCCcEEEe
Confidence 33443 2248998876 34667778888888776654
No 358
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=40.88 E-value=1.8e+02 Score=23.27 Aligned_cols=93 Identities=19% Similarity=0.204 Sum_probs=51.2
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCc
Q 023814 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNG 144 (276)
Q Consensus 65 ~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 144 (276)
+..|+. ++....|+-|+++|..++.+|..++|+-- ++.+.-+....|-++... +++ +.+. +
T Consensus 20 ~l~Gk~-vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~---DPi~alqA~~dGf~v~~~------~~a-------~~~a-d- 80 (162)
T PF00670_consen 20 MLAGKR-VVVIGYGKVGKGIARALRGLGARVTVTEI---DPIRALQAAMDGFEVMTL------EEA-------LRDA-D- 80 (162)
T ss_dssp --TTSE-EEEE--SHHHHHHHHHHHHTT-EEEEE-S---SHHHHHHHHHTT-EEE-H------HHH-------TTT--S-
T ss_pred eeCCCE-EEEeCCCcccHHHHHHHhhCCCEEEEEEC---ChHHHHHhhhcCcEecCH------HHH-------HhhC-C-
Confidence 334444 89999999999999999999988776533 445555555677776532 121 1121 2
Q ss_pred cccCCCCCCcchHhhhhchHHHHHhhhCCCcCEEEEecCCC
Q 023814 145 YILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 185 (276)
Q Consensus 145 ~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~G 185 (276)
+++.--.+. ..+-.|.++|++ -+.|++.+|.-
T Consensus 81 i~vtaTG~~-------~vi~~e~~~~mk--dgail~n~Gh~ 112 (162)
T PF00670_consen 81 IFVTATGNK-------DVITGEHFRQMK--DGAILANAGHF 112 (162)
T ss_dssp EEEE-SSSS-------SSB-HHHHHHS---TTEEEEESSSS
T ss_pred EEEECCCCc-------cccCHHHHHHhc--CCeEEeccCcC
Confidence 333221121 224457788884 47888888764
No 359
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=40.69 E-value=1.9e+02 Score=26.07 Aligned_cols=83 Identities=17% Similarity=0.275 Sum_probs=47.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHc--CCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChh-HHHHHHHHHHHhCCCccc
Q 023814 70 TVLIELTSGNTGIGLAFIAASR--GYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFE-GFVKKGEEILNRTPNGYI 146 (276)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~--g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~-~~~~~a~~~~~~~~~~~~ 146 (276)
.+++.+.+|-.|.-.|+ +..+ |=++.++.-..-.+.-.+..+.+|++|..++.+.+-. .-......+++..++.++
T Consensus 69 ~tf~isgsGh~g~E~al-~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vf 147 (385)
T KOG2862|consen 69 QTFVISGSGHSGWEAAL-VNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVF 147 (385)
T ss_pred ceEEEecCCcchHHHHH-HhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEE
Confidence 34777777777665444 3333 3444444444446666778888999998886432211 122334445555567777
Q ss_pred cCCCCCC
Q 023814 147 LGQFENP 153 (276)
Q Consensus 147 ~~~~~~~ 153 (276)
+.+.+..
T Consensus 148 v~hgdsS 154 (385)
T KOG2862|consen 148 VTHGDSS 154 (385)
T ss_pred EEecCcc
Confidence 7665543
No 360
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=40.53 E-value=1.1e+02 Score=22.41 Aligned_cols=92 Identities=22% Similarity=0.127 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCC--CCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhh
Q 023814 82 IGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP--AVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIH 159 (276)
Q Consensus 82 ~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 159 (276)
..+|.+.++.|+++.++=.......-.+.++....+++.+.. ...+....+.++...+..++... +..|
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~i---------v~GG 88 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPI---------VVGG 88 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEE---------EEEE
T ss_pred HHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEE---------EEEC
Confidence 345556777899988763332234555778888999887753 22334444444443222222121 1123
Q ss_pred -hhchHHHH-HhhhCCCcCEEEEecC
Q 023814 160 -YETTGPEI-WNDSGGKVDAFIAGIG 183 (276)
Q Consensus 160 -~~t~~~Ei-~~q~~~~~d~vvvpvG 183 (276)
+.+..+|. ++.. ..+|+++..=|
T Consensus 89 ~~~t~~~~~~l~~~-~~~D~vv~Geg 113 (121)
T PF02310_consen 89 PHATADPEEILREY-PGIDYVVRGEG 113 (121)
T ss_dssp SSSGHHHHHHHHHH-HTSEEEEEETT
T ss_pred CchhcChHHHhccC-cCcceecCCCh
Confidence 33555554 4332 24788887654
No 361
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=40.40 E-value=91 Score=27.41 Aligned_cols=72 Identities=18% Similarity=0.138 Sum_probs=44.7
Q ss_pred CC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCC
Q 023814 30 CV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPST 102 (276)
Q Consensus 30 ~g-~~v~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~ 102 (276)
.| +|-.++.++-.-.|-+.|-...........-+...++.+ ++...+|-.++|++++.+..|.+-+.|+..+
T Consensus 87 iGAVNTl~~~~~g~l~G~NTD~~G~~~~L~~~~~~~~~~~~~-vlilGAGGAarAv~~aL~~~g~~~i~V~NRt 159 (283)
T COG0169 87 IGAVNTLVREDDGKLRGYNTDGIGFLRALKEFGLPVDVTGKR-VLILGAGGAARAVAFALAEAGAKRITVVNRT 159 (283)
T ss_pred hCCceEEEEccCCEEEEEcCCHHHHHHHHHhcCCCcccCCCE-EEEECCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 45 566656555556777888755433322111112223344 8888899999999999999998655555543
No 362
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=40.38 E-value=62 Score=29.19 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=31.4
Q ss_pred ChHHHHHHHHHHHcCCcEEEEec-CCC--CHHHHH----HHHHCCCEEEEeC
Q 023814 78 GNTGIGLAFIAASRGYKLIIIMP-STY--SIERRI----ILRALGAEVYLAD 122 (276)
Q Consensus 78 GN~g~a~A~~a~~~g~~~~ivvp-~~~--~~~~~~----~~~~~Ga~v~~~~ 122 (276)
+|...|++.++.++|++++++.| +.. ++.-+. .++..|.++....
T Consensus 185 ~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 236 (335)
T PRK04523 185 TAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSH 236 (335)
T ss_pred cHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 47888999999999999999988 643 222222 2345788877664
No 363
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=40.22 E-value=2.7e+02 Score=26.17 Aligned_cols=81 Identities=20% Similarity=0.187 Sum_probs=46.1
Q ss_pred CCCCC---CCChhhHHHHHHHHHHHH-cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCC----cEEEEecCCCCHHHHHH
Q 023814 39 EMMQP---CSSVKDRIAYSMIKDAED-KGLITPGKTVLIELTSGNTGIGLAFIAASRGY----KLIIIMPSTYSIERRII 110 (276)
Q Consensus 39 E~~~p---tGS~K~R~a~~~~~~a~~-~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~----~~~ivvp~~~~~~~~~~ 110 (276)
...|| .+|.+......+..+..+ .|. ..-...+++. |.+|.+++++...++. .=.|++|..+...-...
T Consensus 91 ~~~q~ka~gss~~~~l~~~~e~~~~~~~G~-~~~~~a~~v~--~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kA 167 (444)
T TIGR03531 91 VAPQPKAAGSSLLYKLTNKLVKDFLKLLGL-RSIKSAFVVP--LATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKA 167 (444)
T ss_pred cccCccccCccHHHHHHHHHHHHHHHHcCC-CCCCEEEEEC--CHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHH
Confidence 45677 346666665555555443 353 1001212222 3344444444444443 12466777778888899
Q ss_pred HHHCCCEEEEeC
Q 023814 111 LRALGAEVYLAD 122 (276)
Q Consensus 111 ~~~~Ga~v~~~~ 122 (276)
+...|++.+.++
T Consensus 168 i~~~G~~pv~Vd 179 (444)
T TIGR03531 168 ISTAGFEPRVIE 179 (444)
T ss_pred HHHcCCeEEEee
Confidence 999999999887
No 364
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=40.20 E-value=87 Score=28.54 Aligned_cols=54 Identities=17% Similarity=0.095 Sum_probs=35.1
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCC
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (276)
.++..++|..+..+++.+-..+-.-.|++|..+-......+...|++++.++-+
T Consensus 48 ~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d 101 (376)
T TIGR02379 48 KALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (376)
T ss_pred eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 367777766665555433222223457777766666677778899999998743
No 365
>PRK06841 short chain dehydrogenase; Provisional
Probab=40.20 E-value=2.2e+02 Score=23.68 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=26.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~ 101 (276)
++.+|+..+|--|.++|......|.+++++...
T Consensus 16 k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~ 48 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAAKGARVALLDRS 48 (255)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 455888888999999999988899987766543
No 366
>PRK07904 short chain dehydrogenase; Provisional
Probab=40.19 E-value=2.3e+02 Score=23.88 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=33.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHc-CCcEEEEecCCCC--HHHHHHHHHCCC-EEEEe
Q 023814 69 KTVLIELTSGNTGIGLAFIAASR-GYKLIIIMPSTYS--IERRIILRALGA-EVYLA 121 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~-g~~~~ivvp~~~~--~~~~~~~~~~Ga-~v~~~ 121 (276)
.+.+|+..+|-.|.++|....+. |.+++++.....+ ....+.++..|. +++.+
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~ 65 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVI 65 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEE
Confidence 35578888888999999886666 4888877654322 122344555554 45444
No 367
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=40.11 E-value=70 Score=28.86 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHcCCcEEEEecCCCC--HHHHHH----HHHCCCEEEEeC
Q 023814 79 NTGIGLAFIAASRGYKLIIIMPSTYS--IERRII----LRALGAEVYLAD 122 (276)
Q Consensus 79 N~g~a~A~~a~~~g~~~~ivvp~~~~--~~~~~~----~~~~Ga~v~~~~ 122 (276)
|.+.|+..+++++|++++++.|+... ...++. .+..|+++...+
T Consensus 168 ~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK12562 168 NMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTE 217 (334)
T ss_pred CHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 78999999999999999999998642 222322 344677776654
No 368
>PRK05854 short chain dehydrogenase; Provisional
Probab=39.97 E-value=2.2e+02 Score=24.94 Aligned_cols=73 Identities=19% Similarity=0.230 Sum_probs=41.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHC--CCEEEEeCCC-CChhHHHHHHHHHHHhC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRAL--GAEVYLADPA-VGFEGFVKKGEEILNRT 141 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~--Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 141 (276)
++.+|+..++--|.++|..-.+.|.+++++...... ...++.++.. +.++..+..+ .+.++..+.+.++.+..
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 455888888888888888888889887776553211 1112233322 3455544321 24555555555555443
No 369
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=39.96 E-value=2.5e+02 Score=24.38 Aligned_cols=54 Identities=28% Similarity=0.356 Sum_probs=37.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 117 (276)
+...+.++.+.+|. ..|..|.+++..|+.+|++.++++.. +..+...++.+|+.
T Consensus 153 ~~~~~~~g~~vlI~-g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 206 (334)
T cd08234 153 DLLGIKPGDSVLVF-GAGPIGLLLAQLLKLNGASRVTVAEP--NEEKLELAKKLGAT 206 (334)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCe
Confidence 34455667664555 57889999999999999884444433 45667777888886
No 370
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=39.93 E-value=1.5e+02 Score=26.74 Aligned_cols=54 Identities=28% Similarity=0.438 Sum_probs=38.5
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
+.+.++++.+|. ..|..|.+++..|+.+|...++++.. +..|.+.++.+|++-+
T Consensus 199 ~~~~~g~~VlV~-g~g~vG~~ai~lA~~~G~~~vi~~~~--~~~~~~~~~~~g~~~~ 252 (384)
T cd08265 199 GGFRPGAYVVVY-GAGPIGLAAIALAKAAGASKVIAFEI--SEERRNLAKEMGADYV 252 (384)
T ss_pred CCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCCEE
Confidence 456677775555 67999999999999999854444432 3347788888998544
No 371
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=39.92 E-value=2.9e+02 Score=25.04 Aligned_cols=78 Identities=13% Similarity=0.113 Sum_probs=41.5
Q ss_pred CCCChhhHHHHHHHHHHHHcCC--CCCCCeEEEEeCCChHHHHHHHHHHHcCC---cEEEEecCCCCHHHHHHHHHCCCE
Q 023814 43 PCSSVKDRIAYSMIKDAEDKGL--ITPGKTVLIELTSGNTGIGLAFIAASRGY---KLIIIMPSTYSIERRIILRALGAE 117 (276)
Q Consensus 43 ptGS~K~R~a~~~~~~a~~~g~--~~~~~~~vv~~ssGN~g~a~A~~a~~~g~---~~~ivvp~~~~~~~~~~~~~~Ga~ 117 (276)
+.|.-+.|-+...... ...|. +.+.. .|+...++..+..++..+- .+- .-.|++|.-.-..-...++.+|++
T Consensus 64 ~~G~~~lr~~ia~~~~-~~~g~~~~~~~~-~i~it~G~~~al~~~~~~l-~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~ 140 (396)
T PRK09147 64 TAGLPALREAIAAWLE-RRYGLPALDPAT-QVLPVNGSREALFAFAQTV-IDRDGPGPLVVCPNPFYQIYEGAALLAGAE 140 (396)
T ss_pred CCCCHHHHHHHHHHHH-HHhCCCcCCccc-eEEECCChHHHHHHHHHHH-cCCCCCCCEEEEcCCCccchHHHHHhcCCE
Confidence 3566667754333221 12242 23322 3666666677766555433 222 234555543334445567789999
Q ss_pred EEEeCC
Q 023814 118 VYLADP 123 (276)
Q Consensus 118 v~~~~~ 123 (276)
++.++-
T Consensus 141 ~~~vp~ 146 (396)
T PRK09147 141 PYFLNC 146 (396)
T ss_pred EEEecc
Confidence 999874
No 372
>PRK06138 short chain dehydrogenase; Provisional
Probab=39.85 E-value=2.2e+02 Score=23.56 Aligned_cols=53 Identities=9% Similarity=0.173 Sum_probs=34.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~ 122 (276)
++.+|+..+|-.|.++|......|.+++++...... ......+. .+.++..+.
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~ 59 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQ 59 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEE
Confidence 455888899999999999888889887666543211 11222333 566666554
No 373
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=39.76 E-value=1.3e+02 Score=27.04 Aligned_cols=45 Identities=20% Similarity=0.188 Sum_probs=31.5
Q ss_pred ChHHHHHHHHHHHcCCcEEEEecCCCC--HHHHHH----HHHCCCEEEEeC
Q 023814 78 GNTGIGLAFIAASRGYKLIIIMPSTYS--IERRII----LRALGAEVYLAD 122 (276)
Q Consensus 78 GN~g~a~A~~a~~~g~~~~ivvp~~~~--~~~~~~----~~~~Ga~v~~~~ 122 (276)
.|.+.|++.+++++|+.++++.|+... ...+.. .+..|+++....
T Consensus 166 ~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 166 NNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred cchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 488899999999999999999987542 222322 345787777664
No 374
>PRK06101 short chain dehydrogenase; Provisional
Probab=39.75 E-value=2.1e+02 Score=23.67 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=33.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
+.+|+..+|.-|.++|..-...|.+++++... ..+.+.+...+.++..
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~ 50 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRN---QSVLDELHTQSANIFT 50 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEECC---HHHHHHHHHhcCCCeE
Confidence 34888899999999999888889997776543 3455555544434433
No 375
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=39.73 E-value=50 Score=29.78 Aligned_cols=44 Identities=25% Similarity=0.322 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHcCCcEEEEecCCCC--HHHHH----HHHHCCCEEEEeC
Q 023814 79 NTGIGLAFIAASRGYKLIIIMPSTYS--IERRI----ILRALGAEVYLAD 122 (276)
Q Consensus 79 N~g~a~A~~a~~~g~~~~ivvp~~~~--~~~~~----~~~~~Ga~v~~~~ 122 (276)
|.+.|++.+++++|+.++++.|+... ...++ ..+..|+++...+
T Consensus 168 ~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK01713 168 NMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTD 217 (334)
T ss_pred CHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 57888888888999999988887542 21221 2244688777654
No 376
>PRK12747 short chain dehydrogenase; Provisional
Probab=39.70 E-value=1.9e+02 Score=24.08 Aligned_cols=54 Identities=19% Similarity=0.144 Sum_probs=35.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC--HHHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~ 122 (276)
++.+|+..+|--|.++|..-...|.++++....... ......++..|.++..+.
T Consensus 5 k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (252)
T PRK12747 5 KVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIG 60 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEe
Confidence 455888899999999999988999987775322111 122334555566655443
No 377
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=39.63 E-value=2.2e+02 Score=24.64 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH-----HHHHHHHcCCcEEEEecCC--CCHHHHHHHHHCCCEEEE
Q 023814 48 KDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG-----LAFIAASRGYKLIIIMPST--YSIERRIILRALGAEVYL 120 (276)
Q Consensus 48 K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a-----~A~~a~~~g~~~~ivvp~~--~~~~~~~~~~~~Ga~v~~ 120 (276)
+....+.++....++.. +. .++..+.-|--.. ..-.|+..|+.-.++.+-. ....-...++.+|-+.+.
T Consensus 72 ~~~~~~~~~~~~r~~~~---~~-p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 72 TLADVFELVREIREKDP---TI-PIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred CHHHHHHHHHHHHhcCC---CC-CEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEE
Confidence 44455556655443321 12 2556666664222 3444667788777763211 112334556677877665
Q ss_pred -eCC
Q 023814 121 -ADP 123 (276)
Q Consensus 121 -~~~ 123 (276)
+.+
T Consensus 148 lvap 151 (258)
T PRK13111 148 LVAP 151 (258)
T ss_pred EeCC
Confidence 544
No 378
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=39.45 E-value=2.3e+02 Score=25.64 Aligned_cols=53 Identities=26% Similarity=0.390 Sum_probs=37.1
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 64 ~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
.+.+|...+|...+|--|.++--.|+..++ +.++.- .+.++++.++.+||+-+
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~--~s~e~~~l~k~lGAd~v 206 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTA--CSKEKLELVKKLGADEV 206 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEEE--cccchHHHHHHcCCcEe
Confidence 455666767777888888888888999993 222222 24577888899998744
No 379
>PRK09072 short chain dehydrogenase; Provisional
Probab=39.45 E-value=2.3e+02 Score=23.76 Aligned_cols=33 Identities=33% Similarity=0.433 Sum_probs=27.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~ 101 (276)
.+.+|+..+|-.|.+++......|.+++++...
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 455888889999999999988899987777653
No 380
>PRK07576 short chain dehydrogenase; Provisional
Probab=39.36 E-value=2.3e+02 Score=23.85 Aligned_cols=54 Identities=19% Similarity=0.134 Sum_probs=35.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~ 122 (276)
++.+|+..+|.-|.+++......|..++++...... ....+.+...+.+++.+.
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 64 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVS 64 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEE
Confidence 455888899999999999888899987776543211 111234555566655443
No 381
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=39.32 E-value=1.1e+02 Score=30.04 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=42.1
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCC
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (276)
+++.+..|..|+.+|..-+..|++++++ . .++.+++.++.+|.+++.-|..
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvvI-D--~d~~~v~~~~~~g~~v~~GDat 452 (621)
T PRK03562 402 RVIIAGFGRFGQIVGRLLLSSGVKMTVL-D--HDPDHIETLRKFGMKVFYGDAT 452 (621)
T ss_pred cEEEEecChHHHHHHHHHHhCCCCEEEE-E--CCHHHHHHHHhcCCeEEEEeCC
Confidence 4899999999999999999999998876 2 2567788888899888877653
No 382
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=39.24 E-value=2.2e+02 Score=23.39 Aligned_cols=52 Identities=21% Similarity=0.185 Sum_probs=35.9
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC--HHHHHHHHHCCCEEEEeCC
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADP 123 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~ 123 (276)
+|+..+|.-|.++|......|.+++++.....+ ....+.++..+.++..+..
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 55 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQF 55 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEc
Confidence 678888899999999998899997766543222 1223455566777766553
No 383
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=39.22 E-value=1e+02 Score=28.12 Aligned_cols=10 Identities=10% Similarity=0.198 Sum_probs=5.4
Q ss_pred CcEEEEEecC
Q 023814 201 NIKVYGIEPS 210 (276)
Q Consensus 201 ~~~vigVe~~ 210 (276)
...+|+|...
T Consensus 175 ~lPLiAipTT 184 (465)
T KOG3857|consen 175 LLPLIAIPTT 184 (465)
T ss_pred ccceEecccC
Confidence 3456666543
No 384
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.99 E-value=2.5e+02 Score=23.99 Aligned_cols=71 Identities=20% Similarity=0.140 Sum_probs=38.6
Q ss_pred CeEEEEeCCC--hHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHH-HHCCCEE-EEeCCCCChhHHHHHHHHHHHh
Q 023814 69 KTVLIELTSG--NTGIGLAFIAASRGYKLIIIMPSTYSIERRIIL-RALGAEV-YLADPAVGFEGFVKKGEEILNR 140 (276)
Q Consensus 69 ~~~vv~~ssG--N~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~-~~~Ga~v-~~~~~~~~~~~~~~~a~~~~~~ 140 (276)
+..||+..++ .-|.++|......|.+++++-.......+.+.+ +..|..+ +.++- .+.++..+...+..++
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv-~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDV-EDIASVDAVFEALEKK 82 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCC-CCHHHHHHHHHHHHHH
Confidence 4557777665 688899988888999887764322112233333 3346433 33332 2334444444444443
No 385
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=38.85 E-value=2.7e+02 Score=24.85 Aligned_cols=51 Identities=27% Similarity=0.319 Sum_probs=33.6
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCE
Q 023814 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (276)
Q Consensus 64 ~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 117 (276)
.+.++.+.+|. .+|..|.+++..|+.+|.+.++++.. +..+.+.++.+|++
T Consensus 184 ~~~~g~~VlI~-g~g~vG~~~~~lak~~G~~~vi~~~~--s~~~~~~~~~~g~~ 234 (367)
T cd08263 184 DVRPGETVAVI-GVGGVGSSAIQLAKAFGASPIIAVDV--RDEKLAKAKELGAT 234 (367)
T ss_pred cCCCCCEEEEE-CCcHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCc
Confidence 34455664555 57889999889999999884444322 34556666777764
No 386
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=38.79 E-value=1.2e+02 Score=31.45 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=40.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEecCC---------CC---------HHHHHHHHHCCCEEEE
Q 023814 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPST---------YS---------IERRIILRALGAEVYL 120 (276)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~---------~~---------~~~~~~~~~~Ga~v~~ 120 (276)
+.|+.-.+|-.|.+.|+..++.|++++||=... .| ...++.++.+|.+++.
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~ 375 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVK 375 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEE
Confidence 348999999999999999999999999995432 12 1346678889998764
No 387
>PRK05826 pyruvate kinase; Provisional
Probab=38.67 E-value=3.5e+02 Score=25.67 Aligned_cols=124 Identities=12% Similarity=0.092 Sum_probs=69.8
Q ss_pred HHHHHHHHcCCcEEEE-----------ecCCCCHHHHHHHHHCCCEEEEeCCC---CCh-hHHHHHHHHHHHhCCCcccc
Q 023814 83 GLAFIAASRGYKLIII-----------MPSTYSIERRIILRALGAEVYLADPA---VGF-EGFVKKGEEILNRTPNGYIL 147 (276)
Q Consensus 83 a~A~~a~~~g~~~~iv-----------vp~~~~~~~~~~~~~~Ga~v~~~~~~---~~~-~~~~~~a~~~~~~~~~~~~~ 147 (276)
-+...|++.|.++.+- .|....-..+...-..|++-+...+. +.| .++.+.-.+.+++.+..++.
T Consensus 263 ~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 342 (465)
T PRK05826 263 KIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSI 342 (465)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccch
Confidence 3455688899998874 23333334455566689997766532 222 35555444444322211111
Q ss_pred ----CCCCCC--cchHhhhhchHHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCC
Q 023814 148 ----GQFENP--ANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 212 (276)
Q Consensus 148 ----~~~~~~--~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~ 212 (276)
...... ... ......+.++.++++ ..+.||+..-+|.++--++ ...|...|+++.+...
T Consensus 343 ~~~~~~~~~~~~~~~-~~ia~aa~~~a~~l~-~a~~Ivv~T~sG~ta~~is----k~RP~~pI~~~t~~~~ 407 (465)
T PRK05826 343 NLSKHRLDRQFDRID-EAIAMSAMYAANHLK-GVKAIVALTESGRTARLIS----RFRPGAPIFAVTRDEK 407 (465)
T ss_pred hhhhhhccccccchH-HHHHHHHHHHHHhcC-CCCEEEEECCCcHHHHHHH----hhCCCCCEEEEcCCHH
Confidence 010011 112 234445567777773 1678999998988765554 4479999999987644
No 388
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=38.67 E-value=62 Score=26.15 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=24.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecC
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~ 101 (276)
|..-.+|..|.++|+.+...|++++++-+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 445567999999999999999999999774
No 389
>PRK07774 short chain dehydrogenase; Provisional
Probab=38.65 E-value=2.3e+02 Score=23.44 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=34.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCH-HHHHHHHHCCCEEEEe
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI-ERRIILRALGAEVYLA 121 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~-~~~~~~~~~Ga~v~~~ 121 (276)
.+.+|+..+|-.|.+++......|.+++++....... ...+.++..+.+++.+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAV 60 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEE
Confidence 3558888999999999999888999887765542221 1123344455555444
No 390
>PRK06290 aspartate aminotransferase; Provisional
Probab=38.65 E-value=3.2e+02 Score=25.15 Aligned_cols=51 Identities=12% Similarity=0.011 Sum_probs=30.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCC
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 123 (276)
|+..+++..+..++..+- .+-.-.|++|.-.-..-...++.+|++++.++-
T Consensus 109 I~it~Gs~~al~~~~~~~-~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~ 159 (410)
T PRK06290 109 VIHSIGSKPALAMLPSCF-INPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPL 159 (410)
T ss_pred EEEccCHHHHHHHHHHHh-CCCCCEEEEeCCCCccHHHHHHHcCCEEEEEec
Confidence 666666677766655432 222234555543334445677889999998874
No 391
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=38.62 E-value=3.1e+02 Score=26.36 Aligned_cols=95 Identities=28% Similarity=0.328 Sum_probs=59.6
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCC
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQF 150 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (276)
++..-..|+.|..+|..++.+|++++.+=|.. +..+ ...+|.+.. + .++ +.++. +...++
T Consensus 142 tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~---~~~~g~~~~--~----l~e-------ll~~a-DiV~l~-- 201 (526)
T PRK13581 142 TLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI-SPER---AAQLGVELV--S----LDE-------LLARA-DFITLH-- 201 (526)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhH---HHhcCCEEE--c----HHH-------HHhhC-CEEEEc--
Confidence 37777889999999999999999988886642 2222 234565432 1 222 23333 333221
Q ss_pred CCCcchHhhhhchHHHHHhhhCCCcCEEEEecCCCcchH
Q 023814 151 ENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVT 189 (276)
Q Consensus 151 ~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~Gg~~~ 189 (276)
-|...+ -...+..+.++++ +++.+++-++.|+.+-
T Consensus 202 -lP~t~~-t~~li~~~~l~~m--k~ga~lIN~aRG~~vd 236 (526)
T PRK13581 202 -TPLTPE-TRGLIGAEELAKM--KPGVRIINCARGGIID 236 (526)
T ss_pred -cCCChH-hhcCcCHHHHhcC--CCCeEEEECCCCceeC
Confidence 222222 2334556888888 4789999999999874
No 392
>PRK07775 short chain dehydrogenase; Provisional
Probab=38.58 E-value=2.5e+02 Score=23.88 Aligned_cols=55 Identities=20% Similarity=0.144 Sum_probs=36.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCH-HHHHHHHHCCCEEEEeCC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI-ERRIILRALGAEVYLADP 123 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~-~~~~~~~~~Ga~v~~~~~ 123 (276)
.+.+|+..+|..|.+++......|..++++....... .-...++..|.++..+..
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 66 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPL 66 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 3558888889999999998888899877665432111 112345566777766543
No 393
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=38.55 E-value=1.2e+02 Score=28.40 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=23.2
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEecCCC
Q 023814 76 TSGNTGIGLAFIAASRGYKLIIIMPSTY 103 (276)
Q Consensus 76 ssGN~g~a~A~~a~~~g~~~~ivvp~~~ 103 (276)
.-|.+..+|+.+-++.|..+.|++|...
T Consensus 18 Gl~~~v~~L~~aL~~~G~~v~v~~p~y~ 45 (473)
T TIGR02095 18 GLADVVGALPKALAALGHDVRVLLPAYG 45 (473)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 3467888888888899999999999754
No 394
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=38.50 E-value=1.6e+02 Score=27.60 Aligned_cols=53 Identities=25% Similarity=0.237 Sum_probs=39.2
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCC-cEEEEecCCC-----CHHHHHHHHHCCCEEEEe
Q 023814 68 GKTVLIELTSGNTGIGLAFIAASRGY-KLIIIMPSTY-----SIERRIILRALGAEVYLA 121 (276)
Q Consensus 68 ~~~~vv~~ssGN~g~a~A~~a~~~g~-~~~ivvp~~~-----~~~~~~~~~~~Ga~v~~~ 121 (276)
+++ |+...+||.|.-+|..+.++|. +++++.+... .....+.++..|.+++.-
T Consensus 273 g~~-VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~ 331 (457)
T PRK11749 273 GKR-VVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWL 331 (457)
T ss_pred CCe-EEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEec
Confidence 344 8888899999999999999998 7888765321 234456677788887753
No 395
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=38.49 E-value=1.1e+02 Score=28.24 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=36.4
Q ss_pred CChhhHHHHHHHHH----HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEec
Q 023814 45 SSVKDRIAYSMIKD----AEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (276)
Q Consensus 45 GS~K~R~a~~~~~~----a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp 100 (276)
|.+..-.|.+.+.. +...|....|++ |-.-..||.|..+|..++.+|++++++=|
T Consensus 89 g~na~aVAE~v~~~lL~l~r~~g~~l~gkt-vGIIG~G~IG~~va~~l~a~G~~V~~~Dp 147 (381)
T PRK00257 89 GCNARGVVDYVLGSLLTLAEREGVDLAERT-YGVVGAGHVGGRLVRVLRGLGWKVLVCDP 147 (381)
T ss_pred CcChHHHHHHHHHHHHHHhcccCCCcCcCE-EEEECCCHHHHHHHHHHHHCCCEEEEECC
Confidence 45555555554433 233343333434 77778899999999999999999888755
No 396
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=38.43 E-value=2.8e+02 Score=26.95 Aligned_cols=49 Identities=24% Similarity=0.184 Sum_probs=31.3
Q ss_pred eEEEEeCCChHHH---HHHHHHHHcCCcEEEEecCCCCHH----HHHHHHHCCCEE
Q 023814 70 TVLIELTSGNTGI---GLAFIAASRGYKLIIIMPSTYSIE----RRIILRALGAEV 118 (276)
Q Consensus 70 ~~vv~~ssGN~g~---a~A~~a~~~g~~~~ivvp~~~~~~----~~~~~~~~Ga~v 118 (276)
+.+|.+..||.|- .+|...+..|++++|++|...... ...+++.+|..+
T Consensus 137 ~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 137 RVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 4567778887653 444445556999999997644332 245566777654
No 397
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=38.34 E-value=2.5e+02 Score=25.35 Aligned_cols=56 Identities=29% Similarity=0.303 Sum_probs=38.0
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHC-CCEEE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRAL-GAEVY 119 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~-Ga~v~ 119 (276)
+...+.++.+.+|. .+|-.|..++..|+.+|.+.++++.. ++.+.+.++.+ |++++
T Consensus 178 ~~~~~~~g~~VlV~-g~G~vG~~~~~la~~~g~~~vi~~~~--~~~~~~~~~~~~~~~vi 234 (386)
T cd08283 178 ELAEVKPGDTVAVW-GCGPVGLFAARSAKLLGAERVIAIDR--VPERLEMARSHLGAETI 234 (386)
T ss_pred hhccCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCcEEE
Confidence 34456666664454 56888999999999999864444433 35777888877 65543
No 398
>PRK06500 short chain dehydrogenase; Provisional
Probab=38.27 E-value=2.3e+02 Score=23.36 Aligned_cols=51 Identities=20% Similarity=0.135 Sum_probs=34.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHH-HHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRI-ILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~-~~~~~Ga~v~~~~ 122 (276)
++.+|+..+|..|.+++......|.+++++... ..+.+ ..+..|.+++.+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~~~ 58 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRD---PASLEAARAELGESALVIR 58 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC---HHHHHHHHHHhCCceEEEE
Confidence 455888899999999999988899987665432 22322 2334577765543
No 399
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=38.18 E-value=2.7e+02 Score=24.29 Aligned_cols=54 Identities=31% Similarity=0.426 Sum_probs=35.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 117 (276)
+...+.++.+.+|. ..|-.|.+++..|+.+|.+.++++.. +..+.+.++.+|++
T Consensus 159 ~~~~~~~g~~VlV~-g~g~vg~~~~~la~~~g~~~v~~~~~--s~~~~~~~~~~g~~ 212 (343)
T cd08235 159 RKAGIKPGDTVLVI-GAGPIGLLHAMLAKASGARKVIVSDL--NEFRLEFAKKLGAD 212 (343)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCc
Confidence 33456677775666 46788888888999999994333322 44555666677764
No 400
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=38.18 E-value=53 Score=23.20 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=28.7
Q ss_pred HHhhhCCCcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCCcc
Q 023814 167 IWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV 214 (276)
Q Consensus 167 i~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~~~ 214 (276)
.+++.-...|.+|.-...|..+--++-.++....++-|+.|+..++-.
T Consensus 4 ~~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~~DPaVvvvde~g~~v 51 (84)
T PF11760_consen 4 LLRELFRRYDAIIFIMAAGIVVRAIAPLLKDKDTDPAVVVVDEDGRFV 51 (84)
T ss_dssp -HHHHCCC-SEEEEES-HHHHHHHHHHH---TTT--EEEEE-TT--EE
T ss_pred HHHHHHcCCCeEEEEeCcHHHHHHhChhhcccCCCCCEEEEeCCCCEE
Confidence 344443567888888888888888888888878899999999998854
No 401
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=38.07 E-value=92 Score=28.38 Aligned_cols=44 Identities=14% Similarity=0.196 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHcCCcEEEEecCCC--CHHHHHH----HHHCCCEEEEeC
Q 023814 79 NTGIGLAFIAASRGYKLIIIMPSTY--SIERRII----LRALGAEVYLAD 122 (276)
Q Consensus 79 N~g~a~A~~a~~~g~~~~ivvp~~~--~~~~~~~----~~~~Ga~v~~~~ 122 (276)
|.+.|++.+++++|+.++++.|+.. ++..++. ++..|.++..++
T Consensus 188 ~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~ 237 (357)
T TIGR03316 188 SVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVN 237 (357)
T ss_pred hHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 6678999999999999999999854 3433332 345788877664
No 402
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=37.95 E-value=1.4e+02 Score=28.74 Aligned_cols=50 Identities=24% Similarity=0.213 Sum_probs=39.2
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCC
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 123 (276)
+++.+..|+.|+.+|..-+..|++++++-. ++++.+.++.+|.+++.-+.
T Consensus 419 hiiI~G~G~~G~~la~~L~~~g~~vvvId~---d~~~~~~~~~~g~~~i~GD~ 468 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAAGIPLVVIET---SRTRVDELRERGIRAVLGNA 468 (558)
T ss_pred CEEEECCChHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHCCCeEEEcCC
Confidence 489999999999999999999999876643 34667777778877776653
No 403
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=37.94 E-value=2.3e+02 Score=24.84 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=24.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCC
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPST 102 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~ 102 (276)
+++.-.+|-.++|++++....|++-+.++..+
T Consensus 126 ~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 126 TMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 36667778889999998888898766555544
No 404
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.85 E-value=2.3e+02 Score=23.31 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=27.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~ 101 (276)
.+-+|+..+|..|.+++......|.+++++...
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 355888899999999999988899997776554
No 405
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=37.79 E-value=1.4e+02 Score=24.00 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCC--CCHHH--HHHHHHCCC---EEEEeCC
Q 023814 51 IAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPST--YSIER--RIILRALGA---EVYLADP 123 (276)
Q Consensus 51 ~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~--~~~~~--~~~~~~~Ga---~v~~~~~ 123 (276)
.+...+..+.+.|. + +...| |.+-......++.+|+.-.++.... .|..| ...++.++. +|..++.
T Consensus 131 ~~~~~l~~L~~~Gi-----~-~~i~T-GD~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~vGD 203 (215)
T PF00702_consen 131 GAKEALQELKEAGI-----K-VAILT-GDNESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKPGEVAMVGD 203 (215)
T ss_dssp THHHHHHHHHHTTE-----E-EEEEE-SSEHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTGGGEEEEES
T ss_pred hhhhhhhhhhccCc-----c-eeeee-ccccccccccccccccccccccccccccccchhHHHHHHHHhcCCCEEEEEcc
Confidence 45667777777774 2 45555 4555555677889999655555555 68888 888888763 6777773
No 406
>PRK08265 short chain dehydrogenase; Provisional
Probab=37.75 E-value=2.5e+02 Score=23.63 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=33.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 122 (276)
++.+|+..+|--|.++|......|.+++++-... ....+..+..+.++..+.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~ 58 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDA--DNGAAVAASLGERARFIA 58 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhCCeeEEEE
Confidence 4558888889999999999888999876664331 111222334466665544
No 407
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=37.73 E-value=1.2e+02 Score=25.62 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=38.7
Q ss_pred CCCCCCCeEEEEeCCCh----HHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCE
Q 023814 63 GLITPGKTVLIELTSGN----TGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (276)
Q Consensus 63 g~~~~~~~~vv~~ssGN----~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 117 (276)
|-+.+|...+|+...|. .+..+++.+.+.|-+|..|.-+..+..-++.++.+|-+
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWD 74 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCC
Confidence 44667766677775554 45555666557799999888777777777888888864
No 408
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=37.73 E-value=3e+02 Score=24.54 Aligned_cols=53 Identities=26% Similarity=0.331 Sum_probs=35.8
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCE
Q 023814 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (276)
Q Consensus 62 ~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 117 (276)
...+.++.+.+|. ..|..|.+++..|+.+|.+.++++.. +..+.+.++.+|++
T Consensus 177 ~~~~~~g~~vLI~-g~g~vG~a~i~lak~~G~~~Vi~~~~--~~~~~~~~~~~g~~ 229 (363)
T cd08279 177 TARVRPGDTVAVI-GCGGVGLNAIQGARIAGASRIIAVDP--VPEKLELARRFGAT 229 (363)
T ss_pred ccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEcC--CHHHHHHHHHhCCe
Confidence 3445666665555 56889999999999999873333322 44556666778874
No 409
>PRK08227 autoinducer 2 aldolase; Validated
Probab=37.63 E-value=2.8e+02 Score=24.16 Aligned_cols=87 Identities=10% Similarity=0.029 Sum_probs=49.6
Q ss_pred ceEEEEeCCCCCCC-ChhhHHHHHHHHHHHHcCCCCCCCeEEEEe-CCCh--------HHHHHHHHHHHcCCcEEEEecC
Q 023814 32 ARIAAKLEMMQPCS-SVKDRIAYSMIKDAEDKGLITPGKTVLIEL-TSGN--------TGIGLAFIAASRGYKLIIIMPS 101 (276)
Q Consensus 32 ~~v~~K~E~~~ptG-S~K~R~a~~~~~~a~~~g~~~~~~~~vv~~-ssGN--------~g~a~A~~a~~~g~~~~ivvp~ 101 (276)
..+.+|+..-+... ...+......+.+|.+.|. +. |... --|+ .-..++..|.++|+|+.++.|.
T Consensus 75 ~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGA----dA-V~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~pr 149 (264)
T PRK08227 75 KPVVLRASGGNSILKELSNEAVAVDMEDAVRLNA----CA-VAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAV 149 (264)
T ss_pred CcEEEEEcCCCCCCCCCCcccceecHHHHHHCCC----CE-EEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecC
Confidence 45778877654322 1223444555788999886 33 3222 1121 2234566789999999998776
Q ss_pred CCC----HHH----HHHHHHCCCEEEEeCC
Q 023814 102 TYS----IER----RIILRALGAEVYLADP 123 (276)
Q Consensus 102 ~~~----~~~----~~~~~~~Ga~v~~~~~ 123 (276)
... ... ......+||+++.++-
T Consensus 150 G~~~~~~~~~ia~aaRiaaELGADiVK~~y 179 (264)
T PRK08227 150 GKDMVRDARYFSLATRIAAEMGAQIIKTYY 179 (264)
T ss_pred CCCcCchHHHHHHHHHHHHHHcCCEEecCC
Confidence 421 111 1123348888888874
No 410
>PRK05973 replicative DNA helicase; Provisional
Probab=37.62 E-value=1.5e+02 Score=25.22 Aligned_cols=54 Identities=31% Similarity=0.398 Sum_probs=38.8
Q ss_pred CCCCCCCeEEEEeCC--Ch--HHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCC
Q 023814 63 GLITPGKTVLIELTS--GN--TGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGA 116 (276)
Q Consensus 63 g~~~~~~~~vv~~ss--GN--~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga 116 (276)
|.+.+|...+|.+.+ |- .+..+|+.+...|.++..|.-+..+..-.+.+..+|.
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~s~g~ 116 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLRALGA 116 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHcCC
Confidence 456777776777744 44 4444566666679999999888877777888888875
No 411
>PRK05650 short chain dehydrogenase; Provisional
Probab=37.47 E-value=2.5e+02 Score=23.65 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=36.1
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC-HHHHHHHHHCCCEEEEeC
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~ 122 (276)
.+|+..+|..|.++|......|.+++++...... +.....++..|.+++.+.
T Consensus 3 vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 55 (270)
T PRK05650 3 VMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQR 55 (270)
T ss_pred EEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 4788899999999999988889988776654221 222334566677776554
No 412
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=37.36 E-value=1.9e+02 Score=25.75 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=21.4
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEecCCCC
Q 023814 76 TSGNTGIGLAFIAASRGYKLIIIMPSTYS 104 (276)
Q Consensus 76 ssGN~g~a~A~~a~~~g~~~~ivvp~~~~ 104 (276)
-.+|.+.|++.+++++|+.++++.|+..+
T Consensus 161 d~~rv~~Sl~~~~~~~G~~v~~~~P~~~~ 189 (311)
T PRK14804 161 VHNNVVNSLIGITAALGIHLTLVTPIAAK 189 (311)
T ss_pred CCCcHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 34677888888888888888888877643
No 413
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=37.33 E-value=1.6e+02 Score=26.26 Aligned_cols=52 Identities=13% Similarity=0.047 Sum_probs=30.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCc-EEEEecCCCCHHHHHHHHHCCCEEEEeCCC
Q 023814 72 LIELTSGNTGIGLAFIAASRGYK-LIIIMPSTYSIERRIILRALGAEVYLADPA 124 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~-~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (276)
|+...++..+..++..+- .+-. -.|+++.-+-..-...++.+|++++.++-.
T Consensus 77 I~~~~Gs~e~i~~~~~~~-~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~ 129 (351)
T PRK01688 77 VLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTL 129 (351)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecC
Confidence 666666677766665442 2221 344455433334456678899999988643
No 414
>PRK06202 hypothetical protein; Provisional
Probab=37.26 E-value=41 Score=28.17 Aligned_cols=38 Identities=18% Similarity=0.374 Sum_probs=27.9
Q ss_pred cCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecCCC
Q 023814 175 VDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 212 (276)
Q Consensus 175 ~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~~~ 212 (276)
...+=+++|+|....-++..++..+++.+|+|+++...
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~ 99 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPR 99 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHH
Confidence 35666788888776666666666677789999998765
No 415
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=37.16 E-value=63 Score=29.15 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHcCCcEEEEecCCCC--HHHH----HHHHHCCCEEEEeC
Q 023814 79 NTGIGLAFIAASRGYKLIIIMPSTYS--IERR----IILRALGAEVYLAD 122 (276)
Q Consensus 79 N~g~a~A~~a~~~g~~~~ivvp~~~~--~~~~----~~~~~~Ga~v~~~~ 122 (276)
|.+.|+..+++++|+.++++.|+... ...+ +..+..|.++..++
T Consensus 168 ~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 217 (336)
T PRK03515 168 NMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTE 217 (336)
T ss_pred cHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 67889888899999999999887542 2222 22344677776664
No 416
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=37.12 E-value=53 Score=21.79 Aligned_cols=28 Identities=21% Similarity=0.482 Sum_probs=22.5
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEecCCC
Q 023814 76 TSGNTGIGLAFIAASRGYKLIIIMPSTY 103 (276)
Q Consensus 76 ssGN~g~a~A~~a~~~g~~~~ivvp~~~ 103 (276)
.+|-.|.+.|+..++.|.+++|+=..+.
T Consensus 3 GaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 3 GAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred eeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 3578899999999999999999876543
No 417
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=37.01 E-value=1.2e+02 Score=27.98 Aligned_cols=55 Identities=18% Similarity=0.179 Sum_probs=38.1
Q ss_pred CChhhHHHHHHHHHH----HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEec
Q 023814 45 SSVKDRIAYSMIKDA----EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (276)
Q Consensus 45 GS~K~R~a~~~~~~a----~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp 100 (276)
|.+..-.|.+.+..+ .+.|....|.+ |-.-..||.|..+|..++.+|+++..+=|
T Consensus 89 g~na~aVAE~~~~~lL~l~r~~g~~L~gkt-vGIIG~G~IG~~vA~~l~a~G~~V~~~dp 147 (378)
T PRK15438 89 GCNAIAVVEYVFSSLLMLAERDGFSLHDRT-VGIVGVGNVGRRLQARLEALGIKTLLCDP 147 (378)
T ss_pred CcCchHHHHHHHHHHHHHhccCCCCcCCCE-EEEECcCHHHHHHHHHHHHCCCEEEEECC
Confidence 556666666655433 23343233444 77778899999999999999999988854
No 418
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.78 E-value=2.8e+02 Score=23.94 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=31.1
Q ss_pred hHHHHHhhhCCCcCEEEEecCCCcchHHHHHHHHhhC----CCcEEEEEecC
Q 023814 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKN----PNIKVYGIEPS 210 (276)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~~~~~----~~~~vigVe~~ 210 (276)
...+++++- +++|.|++. +...+.|+.+++++.+ .++.|+|.+-.
T Consensus 192 ~~~~~l~~~-~~~~ai~~~--~d~~A~g~~~al~~~g~~vp~di~vig~D~~ 240 (305)
T cd06324 192 QAENLLKRY-PDVRLIWAA--NDQMAFGALRAAKEAGRKPGRDVLFGGVNWS 240 (305)
T ss_pred HHHHHHHHC-CCccEEEEC--CchHHHHHHHHHHHcCCCcCCCEEEEecCCC
Confidence 444555543 468988864 5566779999999876 35788888754
No 419
>PRK13984 putative oxidoreductase; Provisional
Probab=36.53 E-value=1.6e+02 Score=28.75 Aligned_cols=49 Identities=22% Similarity=0.397 Sum_probs=37.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecCCC--------------C----HHHHHHHHHCCCEEEE
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTY--------------S----IERRIILRALGAEVYL 120 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~--------------~----~~~~~~~~~~Ga~v~~ 120 (276)
|+.-.+|-.|.+.|...++.|++++++-.... + ....+.++.+|.+++.
T Consensus 286 v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~ 352 (604)
T PRK13984 286 VAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHL 352 (604)
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEEC
Confidence 66667999999999999999999998843321 1 2345678889988764
No 420
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=36.50 E-value=3e+02 Score=24.46 Aligned_cols=95 Identities=19% Similarity=0.158 Sum_probs=57.3
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCC
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQF 150 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (276)
+|..-..|+.|..+|..++.+|++++++=+..... .|.+. +.. . ....++.++. +...+
T Consensus 138 tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~--------~~~~~--~~~---~----~~l~e~l~~a-Dvvv~--- 196 (312)
T PRK15469 138 TIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSW--------PGVQS--FAG---R----EELSAFLSQT-RVLIN--- 196 (312)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCC--------CCcee--ecc---c----ccHHHHHhcC-CEEEE---
Confidence 47777999999999999999999998875532110 12111 111 1 1122333333 22222
Q ss_pred CCCcchHhhhhchHHHHHhhhCCCcCEEEEecCCCcchH
Q 023814 151 ENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVT 189 (276)
Q Consensus 151 ~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~Gg~~~ 189 (276)
.-|...+ -...+..+.+++++ ++.+++-+|-|+.+-
T Consensus 197 ~lPlt~~-T~~li~~~~l~~mk--~ga~lIN~aRG~vVd 232 (312)
T PRK15469 197 LLPNTPE-TVGIINQQLLEQLP--DGAYLLNLARGVHVV 232 (312)
T ss_pred CCCCCHH-HHHHhHHHHHhcCC--CCcEEEECCCccccC
Confidence 1233332 23456678888884 689999999999874
No 421
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=36.49 E-value=2.6e+02 Score=23.56 Aligned_cols=51 Identities=33% Similarity=0.484 Sum_probs=36.4
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCE
Q 023814 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (276)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 117 (276)
+.+.++.+.+|...+|..|.+++..++..|.+++++.+.. +.+.++.+|++
T Consensus 140 ~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~----~~~~~~~~g~~ 190 (309)
T cd05289 140 GGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA----NADFLRSLGAD 190 (309)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch----hHHHHHHcCCC
Confidence 4456666655555579999999999999999977665432 45556778863
No 422
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=36.41 E-value=1.9e+02 Score=21.93 Aligned_cols=51 Identities=25% Similarity=0.277 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHH
Q 023814 81 GIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKG 134 (276)
Q Consensus 81 g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a 134 (276)
|+.+|-.....|.+++|.-. ..+.-...++..|-+|+..++ .+++++++..
T Consensus 54 G~~~a~~l~~~gvdvvi~~~--iG~~a~~~l~~~GIkv~~~~~-~~V~e~i~~~ 104 (121)
T COG1433 54 GIRIAELLVDEGVDVVIASN--IGPNAYNALKAAGIKVYVAPG-GTVEEAIKAF 104 (121)
T ss_pred hHHHHHHHHHcCCCEEEECc--cCHHHHHHHHHcCcEEEecCC-CCHHHHHHHH
Confidence 45566666777777666422 334446778888888888876 4566665544
No 423
>PRK06198 short chain dehydrogenase; Provisional
Probab=36.38 E-value=2.5e+02 Score=23.34 Aligned_cols=54 Identities=24% Similarity=0.252 Sum_probs=35.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCH--HHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--ERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~--~~~~~~~~~Ga~v~~~~ 122 (276)
++.+|+..+|..|..+|......|.+.++++..+... .....+...|.++..+.
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 62 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQ 62 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 3557888889999999999988999844444433221 22335566788876544
No 424
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=36.32 E-value=2.3e+02 Score=22.76 Aligned_cols=70 Identities=17% Similarity=0.132 Sum_probs=40.1
Q ss_pred HHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHHHHhhhCCCcCEEEEecCCCc
Q 023814 111 LRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGG 186 (276)
Q Consensus 111 ~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~Gg 186 (276)
...+|.+++.-+. .+..++++.+.+.......++++.+.|.|.... .+-.++++++. ..+.+++|.-.||
T Consensus 61 ~~~~~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~----~~i~~l~~~~~-~~~~vi~p~~~GG 130 (195)
T TIGR03552 61 ARNLGAPVLRDPG-PGLNNALNAALAEAREPGGAVLILMADLPLLTP----RELKRLLAAAT-EGDVVIAPDRGGG 130 (195)
T ss_pred HHhcCCEEEecCC-CCHHHHHHHHHHHhhccCCeEEEEeCCCCCCCH----HHHHHHHHhcc-cCCEEEEecCCCC
Confidence 3456666654332 245677777766544322356677778887542 12234555553 3578889986663
No 425
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=36.28 E-value=1.6e+02 Score=29.11 Aligned_cols=50 Identities=24% Similarity=0.312 Sum_probs=38.4
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCC---------C---------HHHHHHHHHCCCEEEE
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY---------S---------IERRIILRALGAEVYL 120 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~---------~---------~~~~~~~~~~Ga~v~~ 120 (276)
.|+.-.+|-.|.+.|...++.|++++||=.... + ...++.++.+|.+++.
T Consensus 329 ~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~ 396 (654)
T PRK12769 329 RVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFEL 396 (654)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEEC
Confidence 489999999999999999999999988854321 1 1235667888988764
No 426
>PRK06720 hypothetical protein; Provisional
Probab=36.25 E-value=2.2e+02 Score=22.62 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=23.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIM 99 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivv 99 (276)
...+|+..++--|.++|......|.+++++-
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~ 47 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTD 47 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEE
Confidence 3447777888888898888777887766554
No 427
>PRK07060 short chain dehydrogenase; Provisional
Probab=36.23 E-value=2e+02 Score=23.58 Aligned_cols=52 Identities=25% Similarity=0.224 Sum_probs=36.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHH-HHCCCEEEEeCC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIIL-RALGAEVYLADP 123 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~-~~~Ga~v~~~~~ 123 (276)
.+.+|+..+|..|..++......|.+++++... ..+.+.+ ...+.+++.++-
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~---~~~~~~~~~~~~~~~~~~D~ 62 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARN---AAALDRLAGETGCEPLRLDV 62 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCeEEEecC
Confidence 455888888999999999999999987665543 2333333 345677776664
No 428
>PLN02253 xanthoxin dehydrogenase
Probab=36.19 E-value=2.4e+02 Score=23.89 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=26.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEec
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp 100 (276)
++.+|+..+|.-|.++|......|..++++-.
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 45588889999999999998889998777644
No 429
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=36.12 E-value=1.4e+02 Score=26.91 Aligned_cols=34 Identities=15% Similarity=0.315 Sum_probs=19.3
Q ss_pred CcCEEEEecCCCcchHHHHHHHHhhCCCcEEEEEecC
Q 023814 174 KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPS 210 (276)
Q Consensus 174 ~~d~vvvpvG~Gg~~~Gi~~~~~~~~~~~~vigVe~~ 210 (276)
++| +|+++|+|. ..=+++++.... ..++|.|-..
T Consensus 77 ~~d-~IIavGGGs-~~D~aK~ia~~~-~~p~i~VPTt 110 (349)
T cd08550 77 EAD-VIIGVGGGK-TLDTAKAVADRL-DKPIVIVPTI 110 (349)
T ss_pred CCC-EEEEecCcH-HHHHHHHHHHHc-CCCEEEeCCc
Confidence 356 567888665 445555554332 3566766554
No 430
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=36.08 E-value=2.3e+02 Score=22.80 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=22.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIM 99 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivv 99 (276)
.+.+|...+|..|++++......|.+++++-
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~ 59 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVG 59 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEc
Confidence 4545555678999888888777787666553
No 431
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=36.07 E-value=2.2e+02 Score=25.20 Aligned_cols=56 Identities=18% Similarity=0.187 Sum_probs=34.0
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCH----HHHHHHHHCCCEEEEeC
Q 023814 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI----ERRIILRALGAEVYLAD 122 (276)
Q Consensus 66 ~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~----~~~~~~~~~Ga~v~~~~ 122 (276)
.+|.+ |+|.+.+.+...+-..|...|.+..+++.++.|. .....+...|-.+..+.
T Consensus 114 ~~g~~-ILT~~~S~tv~~~l~~a~~~~~~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~ 173 (301)
T TIGR00511 114 RDGDV-VMTHCNSEAALSVIKTAFEQGKDIEVIATETRPRKQGHITAKELRDYGIPVTLIV 173 (301)
T ss_pred CCCCE-EEEECCcHHHHHHHHHHHHcCCcEEEEEecCCCcchHHHHHHHHHHCCCCEEEEe
Confidence 34444 8888766666666666777888888888776552 12333444454444443
No 432
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=36.06 E-value=2.9e+02 Score=23.95 Aligned_cols=65 Identities=22% Similarity=0.178 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHcCCCCCCCeEEEEe-CCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCC-EEEE
Q 023814 51 IAYSMIKDAEDKGLITPGKTVLIEL-TSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGA-EVYL 120 (276)
Q Consensus 51 ~a~~~~~~a~~~g~~~~~~~~vv~~-ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga-~v~~ 120 (276)
|....+.++.+.|. +. |+.. -.=.+.--+...|+..|++.+.++..+++..+++.+....- -|+.
T Consensus 107 G~e~F~~~~~~aGv----dg-viipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~ 173 (263)
T CHL00200 107 GINKFIKKISQAGV----KG-LIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYL 173 (263)
T ss_pred CHHHHHHHHHHcCC----eE-EEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence 44445555666554 22 3332 22245555566666667766666666666666655554443 3444
No 433
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=35.80 E-value=80 Score=29.10 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=19.2
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecC
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~ 101 (276)
|+..+.|.+|.-.+-.++++|.+++++-.+
T Consensus 83 VLv~~nG~FG~R~~~ia~~~g~~v~~~~~~ 112 (383)
T COG0075 83 VLVVVNGKFGERFAEIAERYGAEVVVLEVE 112 (383)
T ss_pred EEEEeCChHHHHHHHHHHHhCCceEEEeCC
Confidence 666666666666666666666666666554
No 434
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=35.72 E-value=1.9e+02 Score=25.90 Aligned_cols=51 Identities=20% Similarity=0.107 Sum_probs=37.8
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCc-EEEEecCC-----CCHHHHHHHHHCCCEEEEe
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYK-LIIIMPST-----YSIERRIILRALGAEVYLA 121 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~-~~ivvp~~-----~~~~~~~~~~~~Ga~v~~~ 121 (276)
.++...+|+.|.-+|......|.+ ++++.+.. .....++.++..|.+++.-
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~ 230 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLEL 230 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEeec
Confidence 488888999999999888888997 88886532 1234456677788877653
No 435
>PRK06483 dihydromonapterin reductase; Provisional
Probab=35.56 E-value=2.5e+02 Score=23.03 Aligned_cols=52 Identities=25% Similarity=0.273 Sum_probs=37.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCC
Q 023814 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (276)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 123 (276)
+.+|+..+|--|.++|......|.+++++-... ....+.++..|++.+.++-
T Consensus 4 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~D~ 55 (236)
T PRK06483 4 PILITGAGQRIGLALAWHLLAQGQPVIVSYRTH--YPAIDGLRQAGAQCIQADF 55 (236)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc--hhHHHHHHHcCCEEEEcCC
Confidence 458888999999999998888899887765432 2234555667877776664
No 436
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=35.56 E-value=2.8e+02 Score=27.46 Aligned_cols=53 Identities=26% Similarity=0.258 Sum_probs=37.5
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCc-EEEEecCCC-----CHHHHHHHHHCCCEEEE
Q 023814 67 PGKTVLIELTSGNTGIGLAFIAASRGYK-LIIIMPSTY-----SIERRIILRALGAEVYL 120 (276)
Q Consensus 67 ~~~~~vv~~ssGN~g~a~A~~a~~~g~~-~~ivvp~~~-----~~~~~~~~~~~Ga~v~~ 120 (276)
.+++ |+...+||.|.-+|..+.++|.+ ++++.+.+. ....+......|.+++.
T Consensus 322 ~gk~-VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~~eGV~i~~ 380 (652)
T PRK12814 322 PGKK-VVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLRE 380 (652)
T ss_pred CCCe-EEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCcEEe
Confidence 4444 88889999999999999999975 777765431 23334445567887765
No 437
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=35.35 E-value=1.6e+02 Score=20.62 Aligned_cols=77 Identities=12% Similarity=0.122 Sum_probs=45.4
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH--HHHHcCCcEEEEecCCCCHHHHHHHHHC-CCEEEE
Q 023814 44 CSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF--IAASRGYKLIIIMPSTYSIERRIILRAL-GAEVYL 120 (276)
Q Consensus 44 tGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~--~a~~~g~~~~ivvp~~~~~~~~~~~~~~-Ga~v~~ 120 (276)
.|....-.+..+..+...... ...++.++.-|+.-+++. .|.+.+.|..++- .+.+......++.+ ..+|+.
T Consensus 4 ~G~dRyeTs~~va~~~~~~~~----~~~v~ia~g~~~~Dalsa~~~a~~~~~PIll~~-~~l~~~~~~~l~~~~~~~v~i 78 (92)
T PF04122_consen 4 SGADRYETSAKVAKKFYPDNK----SDKVYIASGDNFADALSASPLAAKNNAPILLVN-NSLPSSVKAFLKSLNIKKVYI 78 (92)
T ss_pred CCCCHHHHHHHHHHHhcccCC----CCEEEEEeCcchhhhhhhHHHHHhcCCeEEEEC-CCCCHHHHHHHHHcCCCEEEE
Confidence 344444445555444322221 223666666565555444 5666788877765 77788878888887 457888
Q ss_pred eCCCC
Q 023814 121 ADPAV 125 (276)
Q Consensus 121 ~~~~~ 125 (276)
+++..
T Consensus 79 iGg~~ 83 (92)
T PF04122_consen 79 IGGEG 83 (92)
T ss_pred ECCCC
Confidence 87643
No 438
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=35.33 E-value=2.1e+02 Score=26.18 Aligned_cols=95 Identities=11% Similarity=0.172 Sum_probs=42.2
Q ss_pred CcEEEEecCCCCHHHHHHHHHCCC-EEEEeCCCCChh--HHHHHHHHHHHhCCCcc--ccCCCCCCcchHhhhhchHHHH
Q 023814 93 YKLIIIMPSTYSIERRIILRALGA-EVYLADPAVGFE--GFVKKGEEILNRTPNGY--ILGQFENPANPEIHYETTGPEI 167 (276)
Q Consensus 93 ~~~~ivvp~~~~~~~~~~~~~~Ga-~v~~~~~~~~~~--~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~g~~t~~~Ei 167 (276)
.|..|+.-.+.-..--+.++.+|. ++..+.+. ... +..+...+..++.+-.+ |-.--.||..-. -.-+.|+
T Consensus 8 ~p~~i~~G~g~~~~l~~~~~~~g~~~~livt~~-~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~---v~~~~~~ 83 (383)
T PRK09860 8 IPSVNVIGADSLTDAMNMMADYGFTRTLIVTDN-MLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTEN---VAAGLKL 83 (383)
T ss_pred cCCeEEECcCHHHHHHHHHHhcCCCEEEEEcCc-chhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHH---HHHHHHH
Confidence 455555554443333455667775 45445332 111 22334444444432111 111111343221 2223355
Q ss_pred HhhhCCCcCEEEEecCCCcchHHHHHHH
Q 023814 168 WNDSGGKVDAFIAGIGTGGTVTGAGRFL 195 (276)
Q Consensus 168 ~~q~~~~~d~vvvpvG~Gg~~~Gi~~~~ 195 (276)
+++. ++| +|+++|+|+.+ =++++.
T Consensus 84 ~~~~--~~D-~IiaiGGGS~i-D~AK~i 107 (383)
T PRK09860 84 LKEN--NCD-SVISLGGGSPH-DCAKGI 107 (383)
T ss_pred HHHc--CCC-EEEEeCCchHH-HHHHHH
Confidence 5554 467 46788877654 344443
No 439
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=35.30 E-value=1e+02 Score=25.71 Aligned_cols=26 Identities=35% Similarity=0.532 Sum_probs=19.7
Q ss_pred ChHHHHHHHHHHHcCCcEEEEecCCC
Q 023814 78 GNTGIGLAFIAASRGYKLIIIMPSTY 103 (276)
Q Consensus 78 GN~g~a~A~~a~~~g~~~~ivvp~~~ 103 (276)
|-+-.+||.+|++.|+++.+++...-
T Consensus 53 GC~P~GLAlAA~rrG~~vev~~~~~~ 78 (207)
T PF11814_consen 53 GCGPFGLALAAARRGFKVEVWVSTDG 78 (207)
T ss_pred CcChHHHHHHHHHcCCceEEEECCCC
Confidence 44556677778888999999998653
No 440
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=35.22 E-value=2.8e+02 Score=23.61 Aligned_cols=56 Identities=29% Similarity=0.436 Sum_probs=39.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEE
Q 023814 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (276)
Q Consensus 61 ~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 120 (276)
+.+.+.++.+.+|...+|..|.+++..++.+|.+++++.+ + .+.+.++.+|++-+.
T Consensus 138 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~-~~~~~~~~~g~~~~~ 193 (326)
T cd08272 138 DRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATAS---S-EKAAFARSLGADPII 193 (326)
T ss_pred HhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEec---h-HHHHHHHHcCCCEEE
Confidence 4455667777556556789999999999999998766543 2 556666778875443
No 441
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=35.21 E-value=1.7e+02 Score=25.59 Aligned_cols=47 Identities=23% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCC--ChHHHHHHHHHHHcCCcEEEEec
Q 023814 50 RIAYSMIKDAEDKGLITPGKTVLIELTS--GNTGIGLAFIAASRGYKLIIIMP 100 (276)
Q Consensus 50 R~a~~~~~~a~~~g~~~~~~~~vv~~ss--GN~g~a~A~~a~~~g~~~~ivvp 100 (276)
+.+...+..|.++|+ .-.|+..-| .+-|..+|+.-+..|++++++.+
T Consensus 120 ~tv~~~l~~A~~~gk----~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~D 168 (275)
T PRK08335 120 SAVLEILKTAKRKGK----RFKVILTESAPDYEGLALANELEFLGIEFEVITD 168 (275)
T ss_pred HHHHHHHHHHHHcCC----ceEEEEecCCCchhHHHHHHHHHHCCCCEEEEec
No 442
>PLN02583 cinnamoyl-CoA reductase
Probab=34.98 E-value=3e+02 Score=23.80 Aligned_cols=33 Identities=30% Similarity=0.327 Sum_probs=28.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~ 101 (276)
.+.+|+..+|-.|..++......|.+++++++.
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 456888899999999999999999999988764
No 443
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=34.93 E-value=2.5e+02 Score=22.96 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=34.4
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCH--HHHHHHHHCCCEEEEeC
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--ERRIILRALGAEVYLAD 122 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~--~~~~~~~~~Ga~v~~~~ 122 (276)
.+|+..+|.-|..+|......|..++++...+.+. .....+...+.++..+.
T Consensus 3 ~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 56 (242)
T TIGR01829 3 ALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVE 56 (242)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEE
Confidence 47888899999999999888999887766532111 11233444566665554
No 444
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=34.92 E-value=1.7e+02 Score=26.72 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=14.3
Q ss_pred HHHhhhCCCcCEEEEecCCCcchHHHHH
Q 023814 166 EIWNDSGGKVDAFIAGIGTGGTVTGAGR 193 (276)
Q Consensus 166 Ei~~q~~~~~d~vvvpvG~Gg~~~Gi~~ 193 (276)
+++++. ++| +|+++|+|+.+ =+++
T Consensus 81 ~~~~~~--~~D-~IIaiGGGS~i-D~aK 104 (382)
T PRK10624 81 EVFKAS--GAD-YLIAIGGGSPQ-DTCK 104 (382)
T ss_pred HHHHhc--CCC-EEEEeCChHHH-HHHH
Confidence 444443 467 67889887654 3444
No 445
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=34.88 E-value=1.6e+02 Score=21.81 Aligned_cols=48 Identities=21% Similarity=0.106 Sum_probs=27.9
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
++.+..-.+...+--.|..+|++.+++.|...+++-++.++..|.+++
T Consensus 59 avv~~~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 59 AVVCVPPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVI 106 (116)
T ss_dssp EEE-S-HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEE
T ss_pred EEEEcCHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEE
Confidence 445555556666666677778888888887666666777777776655
No 446
>PRK05717 oxidoreductase; Validated
Probab=34.80 E-value=2.7e+02 Score=23.19 Aligned_cols=52 Identities=15% Similarity=0.351 Sum_probs=33.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 122 (276)
++.+|+..+|.-|.++|......|.+++++-... ....+..+..+.+++.+.
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~~~~~~~ 62 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR--ERGSKVAKALGENAWFIA 62 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHHHHcCCceEEEE
Confidence 4568888999999999999888898877653321 111222344565555444
No 447
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=34.63 E-value=3.9e+02 Score=25.02 Aligned_cols=78 Identities=22% Similarity=0.175 Sum_probs=46.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHH----HHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCcccc
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRII----LRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYIL 147 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~----~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (276)
.+..+||-.+..++..+- ++---+|++|..+-...... +..+|+++.+++...+. +.++.+ ..++....|+
T Consensus 79 av~~~SG~aAi~~al~al-l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~-~~l~~~---I~~~Tk~I~~ 153 (432)
T PRK06702 79 AVATASGQAAIMLAVLNI-CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTA-DEIVAL---ANDKTKLVYA 153 (432)
T ss_pred EEEECCHHHHHHHHHHHh-cCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCH-HHHHHh---CCcCCeEEEE
Confidence 577888888888877654 44445677777554333332 67899999999752222 222222 2223355666
Q ss_pred CCCCCCc
Q 023814 148 GQFENPA 154 (276)
Q Consensus 148 ~~~~~~~ 154 (276)
....||.
T Consensus 154 e~pgnP~ 160 (432)
T PRK06702 154 ESLGNPA 160 (432)
T ss_pred EcCCCcc
Confidence 5556766
No 448
>PLN02477 glutamate dehydrogenase
Probab=34.61 E-value=1.9e+02 Score=26.95 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHH-cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecC
Q 023814 49 DRIAYSMIKDAED-KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (276)
Q Consensus 49 ~R~a~~~~~~a~~-~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~ 101 (276)
-||..+.+..+.+ .|. .....+|+....||-|..+|......|.+++.+...
T Consensus 186 g~Gv~~~~~~~~~~~g~-~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~ 238 (410)
T PLN02477 186 GRGVVFATEALLAEHGK-SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDI 238 (410)
T ss_pred hHHHHHHHHHHHHHcCC-CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence 4677777776654 333 222344888899999999999999999888877553
No 449
>PRK06836 aspartate aminotransferase; Provisional
Probab=34.58 E-value=3.5e+02 Score=24.49 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=31.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCC
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 123 (276)
|+..++++.+..++..+- ..-.-.|+++.-.-..-...++.+|++++.++.
T Consensus 99 i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~ 149 (394)
T PRK06836 99 IVMTCGAAGALNVALKAI-LNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPT 149 (394)
T ss_pred EEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCccHHHHHHHcCCEEEEEec
Confidence 666666677766554332 232334555654444445667889999999874
No 450
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=34.43 E-value=1.2e+02 Score=27.65 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=33.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCC
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 123 (276)
.+..++|..|..+|..+-.++-.-.|++|..+-......+...|++++.++-
T Consensus 51 ~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~ 102 (379)
T PRK11658 51 AIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDV 102 (379)
T ss_pred EEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEec
Confidence 5556666666665554332222346777776666666777889999998874
No 451
>PRK08862 short chain dehydrogenase; Provisional
Probab=34.34 E-value=2.6e+02 Score=23.12 Aligned_cols=75 Identities=13% Similarity=0.050 Sum_probs=40.8
Q ss_pred HHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCCCCCcchHhhhhchHHHHHhhhCCCcCEEEEecCC
Q 023814 105 IERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 184 (276)
Q Consensus 105 ~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~ 184 (276)
..-...+...|++|+.+..+ .+...+...++.+ .+.....-+.|. ...+ ....+..++.+++++.+|.+|..+|.
T Consensus 19 ~aia~~la~~G~~V~~~~r~--~~~l~~~~~~i~~-~~~~~~~~~~D~-~~~~-~~~~~~~~~~~~~g~~iD~li~nag~ 93 (227)
T PRK08862 19 RTISCHFARLGATLILCDQD--QSALKDTYEQCSA-LTDNVYSFQLKD-FSQE-SIRHLFDAIEQQFNRAPDVLVNNWTS 93 (227)
T ss_pred HHHHHHHHHCCCEEEEEcCC--HHHHHHHHHHHHh-cCCCeEEEEccC-CCHH-HHHHHHHHHHHHhCCCCCEEEECCcc
Confidence 34456677799999998753 2222222333322 222221112222 2222 34556667778875379999999874
No 452
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=34.27 E-value=1.4e+02 Score=27.98 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=33.3
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEE
Q 023814 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (276)
Q Consensus 67 ~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v 118 (276)
+|++ ++....|+-|..+|..++.+|.+++++ .. ++.+.......|.++
T Consensus 211 ~Gk~-VlViG~G~IG~~vA~~lr~~Ga~ViV~-d~--dp~ra~~A~~~G~~v 258 (425)
T PRK05476 211 AGKV-VVVAGYGDVGKGCAQRLRGLGARVIVT-EV--DPICALQAAMDGFRV 258 (425)
T ss_pred CCCE-EEEECCCHHHHHHHHHHHhCCCEEEEE-cC--CchhhHHHHhcCCEe
Confidence 4455 888889999999999999999975544 22 233434444567764
No 453
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=34.17 E-value=1.7e+02 Score=25.96 Aligned_cols=48 Identities=25% Similarity=0.217 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEe--CCChHHHHHHHHHHHcCCcEEEEecC
Q 023814 50 RIAYSMIKDAEDKGLITPGKTVLIEL--TSGNTGIGLAFIAASRGYKLIIIMPS 101 (276)
Q Consensus 50 R~a~~~~~~a~~~g~~~~~~~~vv~~--ssGN~g~a~A~~a~~~g~~~~ivvp~ 101 (276)
+.+...+..|.++|+ .-.|+.. .-.+.|+.+|...+..|++++++...
T Consensus 126 ~tv~~~l~~a~~~~~----~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~Ds 175 (301)
T TIGR00511 126 EAALSVIKTAFEQGK----DIEVIATETRPRKQGHITAKELRDYGIPVTLIVDS 175 (301)
T ss_pred HHHHHHHHHHHHcCC----cEEEEEecCCCcchHHHHHHHHHHCCCCEEEEehh
Confidence 667777788877775 2224433 44788999999999999999998654
No 454
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=34.16 E-value=2.1e+02 Score=25.55 Aligned_cols=50 Identities=16% Similarity=0.038 Sum_probs=32.5
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCC
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 123 (276)
|+..+++..++.++..+-.-| . .|+++.-+-..-...++.+|++++.++-
T Consensus 77 I~it~G~~~~i~~~~~~l~~g-~-~vlv~~P~y~~~~~~~~~~g~~~~~v~~ 126 (360)
T PRK07392 77 ILPGNGAAELLTWAGRELAQL-R-AVYLITPAFGDYRRALRAFGATVKELPL 126 (360)
T ss_pred EEECCCHHHHHHHHHHHhCCC-C-eEEEECCCcHHHHHHHHHcCCeEEEEec
Confidence 676666677777665442123 3 4555654455556778889999998864
No 455
>PRK06123 short chain dehydrogenase; Provisional
Probab=34.13 E-value=2.6e+02 Score=23.04 Aligned_cols=53 Identities=23% Similarity=0.281 Sum_probs=33.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCC--CHHHHHHHHHCCCEEEEeC
Q 023814 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY--SIERRIILRALGAEVYLAD 122 (276)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~~~ 122 (276)
+.+|+..+|.-|.++|..-.+.|..+++...... .......++..|.+++.+.
T Consensus 4 ~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 58 (248)
T PRK06123 4 VMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVA 58 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 4588888899999999887778877554432221 1122334556677665544
No 456
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=34.07 E-value=3.6e+02 Score=24.40 Aligned_cols=79 Identities=15% Similarity=0.112 Sum_probs=43.0
Q ss_pred CCCChhhHHHHHHHHHHHHcCC---CCCCCeEEEEeCCChHHHHHHHHHHH-cCCcEEEEecCCCCHHHHHHHHHCCCEE
Q 023814 43 PCSSVKDRIAYSMIKDAEDKGL---ITPGKTVLIELTSGNTGIGLAFIAAS-RGYKLIIIMPSTYSIERRIILRALGAEV 118 (276)
Q Consensus 43 ptGS~K~R~a~~~~~~a~~~g~---~~~~~~~vv~~ssGN~g~a~A~~a~~-~g~~~~ivvp~~~~~~~~~~~~~~Ga~v 118 (276)
+.|.-..|-+..-.... ..|. +.+. ..|+..+++..+..++..+-. -|=...|++|.-.-..-....+.+|+++
T Consensus 63 ~~G~~~lr~aia~~~~~-~~~~~~~~~~~-~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~ 140 (393)
T TIGR03538 63 TKGLPELRQAIARWLER-RFDLPTGVDPE-RHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEP 140 (393)
T ss_pred CCCCHHHHHHHHHHHHH-hhCCcccCCCC-ceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeE
Confidence 46666667554332211 1121 2332 236666666777766554422 2433456777533333345677899999
Q ss_pred EEeCC
Q 023814 119 YLADP 123 (276)
Q Consensus 119 ~~~~~ 123 (276)
+.++-
T Consensus 141 ~~v~~ 145 (393)
T TIGR03538 141 YFLNC 145 (393)
T ss_pred EEeec
Confidence 98864
No 457
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=33.92 E-value=2.7e+02 Score=22.89 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=39.1
Q ss_pred HHcCCCCCCCeEEEEeCCChHHH-HHHHHHHHcCCcEEEEecCCCC--------HHHHHHHHHCCCEEEEe
Q 023814 60 EDKGLITPGKTVLIELTSGNTGI-GLAFIAASRGYKLIIIMPSTYS--------IERRIILRALGAEVYLA 121 (276)
Q Consensus 60 ~~~g~~~~~~~~vv~~ssGN~g~-a~A~~a~~~g~~~~ivvp~~~~--------~~~~~~~~~~Ga~v~~~ 121 (276)
.+.|. .+-+++.-..|.+. +.|.-|..+|++++++-+...+ ..-++.|+..|++|+..
T Consensus 138 ~~~gi----~~lii~G~~T~~CV~~Ta~dA~~~gy~v~v~~Da~a~~~~~~~~~~~al~~~~~~~~~v~t~ 204 (212)
T PRK11609 138 REHGI----TELIVMGLATDYCVKFTVLDALALGYQVNVITDGCRGVNLQPQDSAHAFMEMSAAGATLYTL 204 (212)
T ss_pred HHcCC----CEEEEEEeccCHHHHHHHHHHHHCCCEEEEEeeccCCCCCCchhHHHHHHHHHHCCCEEEEH
Confidence 44564 45466666666665 5667788899999998875432 22466777889888754
No 458
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=33.90 E-value=61 Score=25.02 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=25.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecCC
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPST 102 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~ 102 (276)
++....|.-+.+++..++.+|++++++=|..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 4567788999999999999999999998863
No 459
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=33.70 E-value=1.8e+02 Score=30.61 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=38.3
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCC--------------CH----HHHHHHHHCCCEEEE
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY--------------SI----ERRIILRALGAEVYL 120 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~--------------~~----~~~~~~~~~Ga~v~~ 120 (276)
.|+.-.+|..|.+.|+..++.|++++||-.... +. ..++.++.+|.+++.
T Consensus 541 kVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~ 608 (1019)
T PRK09853 541 KVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEF 608 (1019)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEe
Confidence 488889999999999999999999999865321 11 224567778988764
No 460
>PRK08912 hypothetical protein; Provisional
Probab=33.65 E-value=3.6e+02 Score=24.29 Aligned_cols=78 Identities=13% Similarity=0.054 Sum_probs=43.4
Q ss_pred CCCChhhHHHHHHHHHHHHcCC-CCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEe
Q 023814 43 PCSSVKDRIAYSMIKDAEDKGL-ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (276)
Q Consensus 43 ptGS~K~R~a~~~~~~a~~~g~-~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 121 (276)
+.|....|.+...... ...|. ..|.. .|+..+++.++..++..+- .+-.-.|+++.-.-..-...++.+|++++.+
T Consensus 62 ~~G~~~lr~~ia~~~~-~~~g~~~~~~~-~i~~t~G~~~al~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~ 138 (387)
T PRK08912 62 MMGLPELRQAVAAHYA-RFQGLDLDPET-EVMVTSGATEALAAALLAL-VEPGDEVVLFQPLYDAYLPLIRRAGGVPRLV 138 (387)
T ss_pred CCCcHHHHHHHHHHHH-HHhCCCCCCcc-cEEEeCCcHHHHHHHHHHh-cCCCCEEEEeCCCchhhHHHHHHcCCEEEEE
Confidence 3566666655443221 11232 23321 3777777788876665543 2222345555544444556778999999887
Q ss_pred CC
Q 023814 122 DP 123 (276)
Q Consensus 122 ~~ 123 (276)
+-
T Consensus 139 ~~ 140 (387)
T PRK08912 139 RL 140 (387)
T ss_pred ec
Confidence 64
No 461
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=33.57 E-value=1.8e+02 Score=29.33 Aligned_cols=51 Identities=20% Similarity=0.185 Sum_probs=38.1
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCc-EEEEecCCC-----CHHHHHHHHHCCCEEEEe
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYK-LIIIMPSTY-----SIERRIILRALGAEVYLA 121 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~-~~ivvp~~~-----~~~~~~~~~~~Ga~v~~~ 121 (276)
.||...+||.|.-+|..+.++|.+ ++++.+... ....+..++..|.+++..
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~~ 628 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLTL 628 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEec
Confidence 388889999999999999999998 888876431 223344566778877643
No 462
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=33.56 E-value=2.9e+02 Score=23.24 Aligned_cols=72 Identities=21% Similarity=0.111 Sum_probs=39.2
Q ss_pred CeEEEEeCC--ChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHH-C-CCEEEEeCCC-CChhHHHHHHHHHHHh
Q 023814 69 KTVLIELTS--GNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRA-L-GAEVYLADPA-VGFEGFVKKGEEILNR 140 (276)
Q Consensus 69 ~~~vv~~ss--GN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~-~-Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 140 (276)
+..+|+..+ +.-|.++|..-.+.|.++++.-.......+++.+.. . |.+++.+..+ .+.++..+...+..++
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEE 84 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHh
Confidence 354777754 789999999988899987765432222333443332 2 4455444322 2333444444444443
No 463
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=33.51 E-value=2.6e+02 Score=22.70 Aligned_cols=51 Identities=27% Similarity=0.224 Sum_probs=35.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC--HHHHHHHHHCCCEEEEeC
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLAD 122 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~ 122 (276)
+|+..+|-.|..+|......|..++++.....+ ......++..|++++.+.
T Consensus 2 lItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 54 (239)
T TIGR01830 2 LVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVV 54 (239)
T ss_pred EEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEE
Confidence 678888899999998888889987666543311 123345667787766554
No 464
>PHA02542 41 41 helicase; Provisional
Probab=33.42 E-value=4.3e+02 Score=25.11 Aligned_cols=49 Identities=12% Similarity=-0.050 Sum_probs=27.6
Q ss_pred CCCCCCCeEEEEe--CCChHHHHH--HHHHHHcCCcEEEEecCCCCHHHHHHH
Q 023814 63 GLITPGKTVLIEL--TSGNTGIGL--AFIAASRGYKLIIIMPSTYSIERRIIL 111 (276)
Q Consensus 63 g~~~~~~~~vv~~--ssGN~g~a~--A~~a~~~g~~~~ivvp~~~~~~~~~~~ 111 (276)
|.+.+|.-.++.+ +.|-+..++ |..+...|.++.+|--+.....-..++
T Consensus 185 gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~~Rl 237 (473)
T PHA02542 185 GGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIAKRI 237 (473)
T ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHH
Confidence 4466776656666 446555554 444446688887776554443333333
No 465
>PRK08251 short chain dehydrogenase; Provisional
Probab=33.40 E-value=2.8e+02 Score=22.90 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=25.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEecC
Q 023814 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (276)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~ 101 (276)
+.+|+..+|..|.++|..-...|.++++....
T Consensus 4 ~vlItGas~giG~~la~~l~~~g~~v~~~~r~ 35 (248)
T PRK08251 4 KILITGASSGLGAGMAREFAAKGRDLALCARR 35 (248)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence 45888899999999999988889877666543
No 466
>PRK09242 tropinone reductase; Provisional
Probab=33.37 E-value=2.8e+02 Score=23.04 Aligned_cols=55 Identities=22% Similarity=0.161 Sum_probs=35.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHH-HHHHHHHC--CCEEEEeCC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIE-RRIILRAL--GAEVYLADP 123 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~-~~~~~~~~--Ga~v~~~~~ 123 (276)
++.+|+..+|..|.++|......|.+++++........ ....++.. +.+++.+..
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~ 67 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAA 67 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEEC
Confidence 45588888899999999998889998777654321111 12223333 667766643
No 467
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=33.18 E-value=2.7e+02 Score=24.77 Aligned_cols=52 Identities=13% Similarity=0.062 Sum_probs=31.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCC
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (276)
|+..+++..+..++..+- ..-.-.|+++.-+-..-...++.+|++++.++-+
T Consensus 84 I~~t~G~~~~i~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~ 135 (356)
T PRK04870 84 VLLGNGSDELIQLLALAC-AKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLT 135 (356)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCC
Confidence 666665566665544332 2322345566544455566788899999998743
No 468
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=33.12 E-value=1.9e+02 Score=25.20 Aligned_cols=49 Identities=27% Similarity=0.249 Sum_probs=33.8
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcC-CcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 68 GKTVLIELTSGNTGIGLAFIAASRG-YKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 68 ~~~~vv~~ssGN~g~a~A~~a~~~g-~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
+.+.+|...+|-.|.+++..|+.+| .+++++... ..+.+.++.+|++.+
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~---~~~~~~~~~~g~~~~ 199 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASR---PESIAWVKELGADHV 199 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCC---hhhHHHHHhcCCcEE
Confidence 5664555567889999999999999 776555333 345566677887544
No 469
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=33.12 E-value=2.9e+02 Score=23.15 Aligned_cols=31 Identities=29% Similarity=0.355 Sum_probs=26.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecCC
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPST 102 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~ 102 (276)
+....+||.|.++|......|++++|--...
T Consensus 4 ~~i~GtGniG~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 4 IAIIGTGNIGSALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred EEEeccChHHHHHHHHHHhCCCeEEEecCCC
Confidence 5666889999999999999999988875543
No 470
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=33.10 E-value=2.8e+02 Score=22.90 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=27.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCC
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY 103 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~ 103 (276)
.++....|..|..-+......|-.++|+-|+..
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 378888899998888888889999888877644
No 471
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=32.91 E-value=2.5e+02 Score=25.09 Aligned_cols=102 Identities=19% Similarity=0.168 Sum_probs=61.8
Q ss_pred EEEEeCCChHHHHHHHHHH-HcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCC
Q 023814 71 VLIELTSGNTGIGLAFIAA-SRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQ 149 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~-~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (276)
++..-..|+-|+.+|..++ .+|+++..+-|.. +.. ....+|.+. + ++++ +.++. +...++
T Consensus 147 tvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~-~~~---~~~~~~~~~--~----~l~e-------ll~~s-Dvv~lh- 207 (323)
T PRK15409 147 TLGIVGMGRIGMALAQRAHFGFNMPILYNARRH-HKE---AEERFNARY--C----DLDT-------LLQES-DFVCII- 207 (323)
T ss_pred EEEEEcccHHHHHHHHHHHhcCCCEEEEECCCC-chh---hHHhcCcEe--c----CHHH-------HHHhC-CEEEEe-
Confidence 4777788999999999998 8999887664432 221 123445431 2 1222 33333 333221
Q ss_pred CCCCcchHhhhhchHHHHHhhhCCCcCEEEEecCCCcch--HHHHHHHH
Q 023814 150 FENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTV--TGAGRFLK 196 (276)
Q Consensus 150 ~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~Gg~~--~Gi~~~~~ 196 (276)
-|.+.+ =...+..|.++++ +++.+++-++-|+.+ ..+..+++
T Consensus 208 --~plt~~-T~~li~~~~l~~m--k~ga~lIN~aRG~vVde~AL~~AL~ 251 (323)
T PRK15409 208 --LPLTDE-THHLFGAEQFAKM--KSSAIFINAGRGPVVDENALIAALQ 251 (323)
T ss_pred --CCCChH-HhhccCHHHHhcC--CCCeEEEECCCccccCHHHHHHHHH
Confidence 233333 2345777888998 479999999999987 34444443
No 472
>PRK06197 short chain dehydrogenase; Provisional
Probab=32.88 E-value=3.3e+02 Score=23.57 Aligned_cols=33 Identities=12% Similarity=0.247 Sum_probs=26.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~ 101 (276)
++.+|+..+|--|.++|..-...|.+++++...
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 455888888889999998888889988777654
No 473
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=32.77 E-value=2.8e+02 Score=22.74 Aligned_cols=52 Identities=17% Similarity=0.289 Sum_probs=35.4
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC--HHHHHHHHHCCCEEEEeC
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLAD 122 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~ 122 (276)
.+|+..+|.-|.+++......|..++++...+.. ......++..|.++..+.
T Consensus 4 ~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (247)
T PRK09730 4 ALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQ 57 (247)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEE
Confidence 4788889999999999988899987765543322 122334566677666554
No 474
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.75 E-value=2.9e+02 Score=22.98 Aligned_cols=68 Identities=21% Similarity=0.152 Sum_probs=42.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHH
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILN 139 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~ 139 (276)
++.+|+..+|--|.++|......|.+++++... +....+.++..+...+.++-. +.++..+...+..+
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~--~~~~~~~l~~~~~~~~~~Dl~-~~~~~~~~~~~~~~ 75 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGAKVAVLYNS--AENEAKELREKGVFTIKCDVG-NRDQVKKSKEVVEK 75 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC--cHHHHHHHHhCCCeEEEecCC-CHHHHHHHHHHHHH
Confidence 455888889999999999988899887765443 234445555556666666542 33333333344433
No 475
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=32.74 E-value=2.2e+02 Score=24.15 Aligned_cols=49 Identities=14% Similarity=0.054 Sum_probs=34.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCC---CHHHHHHHHHC-CCEEE
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY---SIERRIILRAL-GAEVY 119 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~---~~~~~~~~~~~-Ga~v~ 119 (276)
+++...+|+.|.-+|...+..+.+++++.+... .+...+.++.. |.+++
T Consensus 143 ~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l~~~~gv~~~ 195 (300)
T TIGR01292 143 EVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLRKNPNIEFL 195 (300)
T ss_pred EEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHHHhCCCeEEE
Confidence 377888899999999999888999998887532 22233444444 54444
No 476
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=32.68 E-value=1.2e+02 Score=27.82 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=41.7
Q ss_pred EEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEe---CCChHHHHHHHHHHHcC--CcEEEE
Q 023814 36 AKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIEL---TSGNTGIGLAFIAASRG--YKLIII 98 (276)
Q Consensus 36 ~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~---ssGN~g~a~A~~a~~~g--~~~~iv 98 (276)
.|.-.----|-.|.|-|...+.++.++|+.. | +.|+.+ ++|-++.|++. |+-+| .|++-+
T Consensus 34 ~k~~~dG~VGQ~~AReAaGvIv~mik~gk~a-G-rgiLi~GppgTGKTAlA~gI-a~eLG~dvPF~~i 98 (450)
T COG1224 34 AKFIGDGLVGQEEAREAAGVIVKMIKQGKMA-G-RGILIVGPPGTGKTALAMGI-ARELGEDVPFVAI 98 (450)
T ss_pred EeEcCCcccchHHHHHhhhHHHHHHHhCccc-c-cEEEEECCCCCcHHHHHHHH-HHHhCCCCCceee
Confidence 3333333468889999999999999998754 3 335444 88999888876 56666 555544
No 477
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=32.63 E-value=2.4e+02 Score=25.01 Aligned_cols=91 Identities=12% Similarity=0.066 Sum_probs=51.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEec---CCC-CHH----HHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCC
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMP---STY-SIE----RRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN 143 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp---~~~-~~~----~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~ 143 (276)
++++ |- +..|.++.+|++..-++. +.. ++. -++.++..+.+++++++.. . .+.++.++++.+.
T Consensus 206 ~i~~----H~-af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~--~--~~~~~~la~e~g~ 276 (311)
T PRK09545 206 YFVF----HD-AYGYFEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQF--R--PAVIESVAKGTSV 276 (311)
T ss_pred EEEE----Cc-hHHHHHHhCCCceeeeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCC--C--hHHHHHHHHhcCC
Confidence 6664 33 788999999999875542 222 222 3556788999999998632 2 2345555565532
Q ss_pred c-cccCCCCCCcchH-hhhhchHHHHHhhh
Q 023814 144 G-YILGQFENPANPE-IHYETTGPEIWNDS 171 (276)
Q Consensus 144 ~-~~~~~~~~~~~~~-~g~~t~~~Ei~~q~ 171 (276)
. ..++++....... ..|..+..+..+++
T Consensus 277 ~v~~ldpl~~~~~~~~~~Y~~~m~~n~~~l 306 (311)
T PRK09545 277 RMGTLDPLGTNIKLGKDSYSEFLSQLANQY 306 (311)
T ss_pred eEEEeccccccccCCHhHHHHHHHHHHHHH
Confidence 2 2345664433221 24555554444443
No 478
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=32.60 E-value=1.1e+02 Score=29.11 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=38.1
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCC--------------C----HHHHHHHHHCCCEEEE
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY--------------S----IERRIILRALGAEVYL 120 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~--------------~----~~~~~~~~~~Ga~v~~ 120 (276)
.|+...+|-.|.+.|...++.|+++++|-.... + ...++.++.+|.+++.
T Consensus 145 ~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 212 (485)
T TIGR01317 145 KVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVT 212 (485)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEEC
Confidence 488889999999999999999999999853321 1 1234567788988874
No 479
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=32.58 E-value=1.7e+02 Score=25.95 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=41.2
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCH----HHHHHHHHCCCEEEEeCC
Q 023814 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI----ERRIILRALGAEVYLADP 123 (276)
Q Consensus 65 ~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~----~~~~~~~~~Ga~v~~~~~ 123 (276)
+..|.+ |+|.+.+.+...+-..|...|.+..|++.++.|. .....+...|-++..+..
T Consensus 118 i~~g~~-ILT~~~S~tv~~~l~~A~~~~k~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~D 179 (310)
T PRK08535 118 IRDGDV-IMTHCNSSAALSVIKTAHEQGKDIEVIATETRPRNQGHITAKELAEYGIPVTLIVD 179 (310)
T ss_pred cCCCCE-EEEeCCcHHHHHHHHHHHHCCCeEEEEEecCCchhhHHHHHHHHHHCCCCEEEEeh
Confidence 334444 8888766666666666777888999999887663 234567778999998873
No 480
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=32.55 E-value=3.1e+02 Score=23.21 Aligned_cols=54 Identities=33% Similarity=0.380 Sum_probs=37.2
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 63 g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
..+.++.+.+|...+|..|.+++..++..|.+++++.+ +..+.+.++.+|++.+
T Consensus 135 ~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 188 (323)
T cd05276 135 GGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAG---SEEKLEACRALGADVA 188 (323)
T ss_pred cCCCCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHcCCCEE
Confidence 34556666566667788999999999999988655443 3455666677787533
No 481
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=32.40 E-value=1.7e+02 Score=25.95 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHcCCcEEEEecCC
Q 023814 79 NTGIGLAFIAASRGYKLIIIMPST 102 (276)
Q Consensus 79 N~g~a~A~~a~~~g~~~~ivvp~~ 102 (276)
|.+.|++.+++++|+.++++.|+.
T Consensus 158 ~v~~S~~~~~~~~g~~v~~~~P~~ 181 (302)
T PRK14805 158 NVTHSLMYGAAILGATMTVICPPG 181 (302)
T ss_pred ccHHHHHHHHHHcCCEEEEECCch
Confidence 556777777777777777777764
No 482
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=32.37 E-value=2.6e+02 Score=26.02 Aligned_cols=77 Identities=10% Similarity=-0.051 Sum_probs=45.2
Q ss_pred CCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChH--HHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHH----C
Q 023814 41 MQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNT--GIGLAFIAASRGYKLIIIMPSTYSIERRIILRA----L 114 (276)
Q Consensus 41 ~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~--g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~----~ 114 (276)
..|+|+=|--.+..+...+.++|. ...+|++-+--. .-.+..++..+|+++.+.. .+..-.+.++. .
T Consensus 212 vGptGvGKTTt~akLA~~l~~~g~----~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~---dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 212 IGQTGVGKTTTLVKLGWQLLKQNR----TVGFITTDTFRSGAVEQFQGYADKLDVELIVAT---SPAELEEAVQYMTYVN 284 (407)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCC----eEEEEeCCccCccHHHHHHHHhhcCCCCEEecC---CHHHHHHHHHHHHhcC
Confidence 357888888888777776666664 334555533222 3366777888888876432 12222222222 3
Q ss_pred CCEEEEeCCC
Q 023814 115 GAEVYLADPA 124 (276)
Q Consensus 115 Ga~v~~~~~~ 124 (276)
+.+++.++..
T Consensus 285 ~~D~VLIDTA 294 (407)
T PRK12726 285 CVDHILIDTV 294 (407)
T ss_pred CCCEEEEECC
Confidence 5688888754
No 483
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=32.30 E-value=3.7e+02 Score=24.45 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=36.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecCCC------CHH----HHHHHHHCCCEEEE
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTY------SIE----RRIILRALGAEVYL 120 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~------~~~----~~~~~~~~Ga~v~~ 120 (276)
++...+|..|.-+|...+.+|.+++++.+... ++. ..+.++..|.+++.
T Consensus 147 vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~ 205 (396)
T PRK09754 147 VVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILL 205 (396)
T ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 77788899999999999999999999876432 221 23345667777664
No 484
>PRK05872 short chain dehydrogenase; Provisional
Probab=32.30 E-value=3.1e+02 Score=23.63 Aligned_cols=32 Identities=28% Similarity=0.298 Sum_probs=26.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEec
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp 100 (276)
++.+|+..+|.-|.++|......|.+++++-.
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r 41 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVDL 41 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 45688889999999999999999987666543
No 485
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=32.28 E-value=1.9e+02 Score=22.66 Aligned_cols=45 Identities=31% Similarity=0.307 Sum_probs=33.2
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEE
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 119 (276)
|-.-.-|+.|..+|......|++++++= .++.+.+.+...|+++.
T Consensus 4 Ig~IGlG~mG~~~a~~L~~~g~~v~~~d---~~~~~~~~~~~~g~~~~ 48 (163)
T PF03446_consen 4 IGFIGLGNMGSAMARNLAKAGYEVTVYD---RSPEKAEALAEAGAEVA 48 (163)
T ss_dssp EEEE--SHHHHHHHHHHHHTTTEEEEEE---SSHHHHHHHHHTTEEEE
T ss_pred EEEEchHHHHHHHHHHHHhcCCeEEeec---cchhhhhhhHHhhhhhh
Confidence 4445669999999999999999998874 35677777777774433
No 486
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=32.22 E-value=2.8e+02 Score=23.21 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=25.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEec
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp 100 (276)
.+|+.++|..|.++|......|.++++.-.
T Consensus 3 vlItGas~gIG~aia~~l~~~G~~V~~~~r 32 (259)
T PRK08340 3 VLVTASSRGIGFNVARELLKKGARVVISSR 32 (259)
T ss_pred EEEEcCCcHHHHHHHHHHHHcCCEEEEEeC
Confidence 478889999999999998889998766544
No 487
>PRK10358 putative rRNA methylase; Provisional
Probab=32.17 E-value=59 Score=25.78 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=20.0
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEecC
Q 023814 76 TSGNTGIGLAFIAASRGYKLIIIMPS 101 (276)
Q Consensus 76 ssGN~g~a~A~~a~~~g~~~~ivvp~ 101 (276)
-.||.| +++..|..+|++.+++-|.
T Consensus 11 dPgNlG-ti~Rta~a~G~~~viv~~~ 35 (157)
T PRK10358 11 IPPNTG-NIIRLCANTGFRLHIIEPM 35 (157)
T ss_pred CcChHH-HHHHHHHHhCCEEEEECCC
Confidence 448998 6688899999998888664
No 488
>PLN02494 adenosylhomocysteinase
Probab=32.15 E-value=2.2e+02 Score=27.07 Aligned_cols=93 Identities=17% Similarity=0.187 Sum_probs=55.6
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCcc
Q 023814 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGY 145 (276)
Q Consensus 66 ~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~ 145 (276)
..|++ ++....|.-|+++|..++.+|.+++++=. ++.+.......|.++. + .+++ .+.. +.+
T Consensus 252 LaGKt-VvViGyG~IGr~vA~~aka~Ga~VIV~e~---dp~r~~eA~~~G~~vv--~----leEa-------l~~A-DVV 313 (477)
T PLN02494 252 IAGKV-AVICGYGDVGKGCAAAMKAAGARVIVTEI---DPICALQALMEGYQVL--T----LEDV-------VSEA-DIF 313 (477)
T ss_pred cCCCE-EEEECCCHHHHHHHHHHHHCCCEEEEEeC---CchhhHHHHhcCCeec--c----HHHH-------HhhC-CEE
Confidence 34555 89999999999999999999997555322 2333334455777743 1 2221 2222 333
Q ss_pred ccCCCCCCcchHhhhhchHHHHHhhhCCCcCEEEEecCCCc
Q 023814 146 ILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGG 186 (276)
Q Consensus 146 ~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~Gg 186 (276)
+. .-.+ ...+..+.++++ ++..+++-+|..+
T Consensus 314 I~-tTGt-------~~vI~~e~L~~M--K~GAiLiNvGr~~ 344 (477)
T PLN02494 314 VT-TTGN-------KDIIMVDHMRKM--KNNAIVCNIGHFD 344 (477)
T ss_pred EE-CCCC-------ccchHHHHHhcC--CCCCEEEEcCCCC
Confidence 22 1111 223445667777 3688999998854
No 489
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=32.04 E-value=2.4e+02 Score=24.79 Aligned_cols=55 Identities=27% Similarity=0.385 Sum_probs=35.6
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCE
Q 023814 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (276)
Q Consensus 60 ~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 117 (276)
.+...+.||.+.+|-+..|--|..+-..++..|..++.... ..+|.+..+.+|++
T Consensus 139 ~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~as---TaeK~~~akenG~~ 193 (336)
T KOG1197|consen 139 FEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATAS---TAEKHEIAKENGAE 193 (336)
T ss_pred HHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEec---cHHHHHHHHhcCCc
Confidence 35566778888777778888887776666666655444433 33556666666665
No 490
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=31.99 E-value=2.2e+02 Score=21.44 Aligned_cols=52 Identities=35% Similarity=0.357 Sum_probs=32.8
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCc-EEEEecCCCCHHH----HHHHHHCCCEEEEeC
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYK-LIIIMPSTYSIER----RIILRALGAEVYLAD 122 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~-~~ivvp~~~~~~~----~~~~~~~Ga~v~~~~ 122 (276)
.+|+..+|..|.+++......|.. ++++.....+... +..++..|.++..+.
T Consensus 3 ~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (180)
T smart00822 3 YLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVA 59 (180)
T ss_pred EEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEE
Confidence 377778889999999888888875 4444332222111 345566777776554
No 491
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=31.99 E-value=3.8e+02 Score=24.11 Aligned_cols=77 Identities=13% Similarity=0.081 Sum_probs=38.7
Q ss_pred CCChhhHHHHHHHHHHHHcCC-CCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeC
Q 023814 44 CSSVKDRIAYSMIKDAEDKGL-ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (276)
Q Consensus 44 tGS~K~R~a~~~~~~a~~~g~-~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 122 (276)
.|....|-+..-... ...|. +.|.. .|+..+++..+..++..+- ..-.=.|+++.-+-..-...++..|++++.++
T Consensus 68 ~G~~~lr~aia~~~~-~~~g~~~~~~~-~I~it~Gs~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~ 144 (388)
T PRK07366 68 HGTLDFREAAAQWYE-QRFGLAVDPET-EVLPLIGSQEGTAHLPLAV-LNPGDFALLLDPGYPSHAGGVYLAGGQIYPMP 144 (388)
T ss_pred CCCHHHHHHHHHHHH-HhhCCcCCCcC-eEEECCCcHHHHHHHHHHh-CCCCCEEEEcCCCCcchHHHHHhcCCEEEEEE
Confidence 566666654332211 12242 33322 2666666677766555432 22112334443232333466778999999886
Q ss_pred C
Q 023814 123 P 123 (276)
Q Consensus 123 ~ 123 (276)
-
T Consensus 145 ~ 145 (388)
T PRK07366 145 L 145 (388)
T ss_pred C
Confidence 4
No 492
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=31.92 E-value=2.8e+02 Score=26.63 Aligned_cols=103 Identities=27% Similarity=0.330 Sum_probs=62.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCccccCCC
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQF 150 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (276)
+|..-.-|+.|.++|..++.+|++++.+=|. .+..+ ...+|.+. ++ +++ ++.++. +...++
T Consensus 140 tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~-~~~~~---~~~~g~~~--~~---~l~-------ell~~a-DvV~l~-- 200 (525)
T TIGR01327 140 TLGVIGLGRIGSIVAKRAKAFGMKVLAYDPY-ISPER---AEQLGVEL--VD---DLD-------ELLARA-DFITVH-- 200 (525)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEECCC-CChhH---HHhcCCEE--cC---CHH-------HHHhhC-CEEEEc--
Confidence 4777788999999999999999998887653 23222 23455432 21 122 233333 333221
Q ss_pred CCCcchHhhhhchHHHHHhhhCCCcCEEEEecCCCcchH--HHHHHHH
Q 023814 151 ENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVT--GAGRFLK 196 (276)
Q Consensus 151 ~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~Gg~~~--Gi~~~~~ 196 (276)
-|.+.+ -...+..+.++++ +++.+++-++.|+.+- .+..+++
T Consensus 201 -lPlt~~-T~~li~~~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~ 244 (525)
T TIGR01327 201 -TPLTPE-TRGLIGAEELAKM--KKGVIIVNCARGGIIDEAALYEALE 244 (525)
T ss_pred -cCCChh-hccCcCHHHHhcC--CCCeEEEEcCCCceeCHHHHHHHHH
Confidence 222222 1234556778887 4789999999999874 3334443
No 493
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.88 E-value=1.9e+02 Score=27.14 Aligned_cols=49 Identities=24% Similarity=0.247 Sum_probs=35.5
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEecCCCC--HHHHHHHHHCCCEEEE
Q 023814 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYL 120 (276)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~ 120 (276)
++....|..|+++|.+.+..|.+++++-..+.. ....+.++..|.+++.
T Consensus 19 v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~ 69 (480)
T PRK01438 19 VVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRL 69 (480)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEE
Confidence 777788999999999999999998876433221 2234567778877653
No 494
>PRK07856 short chain dehydrogenase; Provisional
Probab=31.80 E-value=3e+02 Score=22.84 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=27.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEecC
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~ 101 (276)
++.+|+..+|-.|.++|......|.+++++...
T Consensus 7 k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~ 39 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFLAAGATVVVCGRR 39 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 455888899999999999988889988776553
No 495
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=31.77 E-value=3e+02 Score=25.12 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=12.1
Q ss_pred CcCEEEEecCCCcchHHHHHHH
Q 023814 174 KVDAFIAGIGTGGTVTGAGRFL 195 (276)
Q Consensus 174 ~~d~vvvpvG~Gg~~~Gi~~~~ 195 (276)
++| +|+++|+|+.+ =++++.
T Consensus 79 ~~D-~IIaiGGGS~i-D~aK~i 98 (386)
T cd08191 79 GPD-VIIGLGGGSCI-DLAKIA 98 (386)
T ss_pred CCC-EEEEeCCchHH-HHHHHH
Confidence 467 47788877654 344443
No 496
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=31.71 E-value=3.1e+02 Score=22.99 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=37.4
Q ss_pred eCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHH
Q 023814 38 LEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRA 113 (276)
Q Consensus 38 ~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~ 113 (276)
.-..||.- -||-.+.+..+++.|. ..-+|.---=.-+..+=..|+..|+..+..+..+++.++.+.+..
T Consensus 101 mgYYNPIl---~yG~e~~iq~ak~aGa----nGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~ 169 (268)
T KOG4175|consen 101 MGYYNPIL---RYGVENYIQVAKNAGA----NGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVE 169 (268)
T ss_pred eecccHHH---hhhHHHHHHHHHhcCC----CceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHH
Confidence 34455542 2455566666666664 111222222234555666677777777766666666666665543
No 497
>PRK08339 short chain dehydrogenase; Provisional
Probab=31.62 E-value=3.2e+02 Score=23.07 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=26.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEec
Q 023814 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (276)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp 100 (276)
+..+|+..+|.-|.++|......|.+++++-.
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGADVILLSR 40 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 45588888999999999999999998777644
No 498
>PRK07023 short chain dehydrogenase; Provisional
Probab=31.62 E-value=2.6e+02 Score=23.08 Aligned_cols=48 Identities=17% Similarity=0.152 Sum_probs=34.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCEEEEeC
Q 023814 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (276)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 122 (276)
.+|+..+|.-|.++|......|.+++++.....+ . .....|.++..+.
T Consensus 4 vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~-~---~~~~~~~~~~~~~ 51 (243)
T PRK07023 4 AIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHP-S---LAAAAGERLAEVE 51 (243)
T ss_pred EEEecCCcchHHHHHHHHHhCCCEEEEEecCcch-h---hhhccCCeEEEEE
Confidence 4888899999999999988889998877654322 1 1344566666554
No 499
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=31.51 E-value=2.3e+02 Score=24.74 Aligned_cols=48 Identities=27% Similarity=0.309 Sum_probs=31.8
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecCCCCHHHHHHHHHCCCE
Q 023814 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (276)
Q Consensus 67 ~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 117 (276)
++.+.+|.+ .|..|.+++..|+.+|.+.++++.. +..+.+.++.+|++
T Consensus 165 ~~~~VLI~g-~g~vG~~~~~lak~~G~~~v~~~~~--s~~~~~~~~~~g~~ 212 (339)
T cd08232 165 AGKRVLVTG-AGPIGALVVAAARRAGAAEIVATDL--ADAPLAVARAMGAD 212 (339)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCC
Confidence 566655644 6788888888899999843444432 34555667778874
No 500
>PRK11914 diacylglycerol kinase; Reviewed
Probab=31.42 E-value=1.9e+02 Score=25.32 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=35.7
Q ss_pred CCCC-CCChhhH-HHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEecC
Q 023814 40 MMQP-CSSVKDR-IAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (276)
Q Consensus 40 ~~~p-tGS~K~R-~a~~~~~~a~~~g~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~ivvp~ 101 (276)
-.|| +|+-+.. ....++..+.+.|. .-.++..+..+++..+|..+...+...+|++-.
T Consensus 14 I~NP~sG~g~~~~~~~~~~~~l~~~g~----~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GG 73 (306)
T PRK11914 14 LTNPLSGHGAAPHAAERAIARLHHRGV----DVVEIVGTDAHDARHLVAAALAKGTDALVVVGG 73 (306)
T ss_pred EECCCCCCCcHHHHHHHHHHHHHHcCC----eEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECC
Confidence 3688 4555543 33344444455553 333556666788888887777778887777754
Done!