Query 023815
Match_columns 276
No_of_seqs 201 out of 1387
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 06:51:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023815.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023815hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12887 ubiA tocopherol phyty 100.0 3.5E-39 7.7E-44 292.8 25.5 240 14-257 2-242 (308)
2 PLN02878 homogentisate phytylt 100.0 6.9E-39 1.5E-43 282.6 20.9 208 48-255 7-214 (280)
3 PRK07566 bacteriochlorophyll/c 100.0 3.4E-36 7.3E-41 274.4 24.0 240 5-255 6-247 (314)
4 TIGR01476 chlor_syn_BchG bacte 100.0 1.9E-36 4.1E-41 272.7 19.4 218 26-255 1-219 (283)
5 PLN00012 chlorophyll synthetas 100.0 2.3E-35 5.1E-40 273.2 24.4 223 20-255 80-310 (375)
6 TIGR02056 ChlG chlorophyll syn 100.0 4.4E-35 9.5E-40 266.2 24.5 224 20-255 11-241 (306)
7 PRK12392 bacteriochlorophyll c 100.0 6.4E-34 1.4E-38 260.2 24.3 223 20-254 7-237 (331)
8 PRK09573 (S)-2,3-di-O-geranylg 100.0 1.9E-34 4.1E-39 259.1 19.8 211 24-255 2-212 (279)
9 PRK12882 ubiA prenyltransferas 100.0 1.2E-33 2.7E-38 253.5 20.6 213 24-255 3-215 (276)
10 PRK12884 ubiA prenyltransferas 100.0 5E-33 1.1E-37 249.9 23.2 212 23-255 2-213 (279)
11 PRK05951 ubiA prenyltransferas 100.0 1.7E-32 3.6E-37 248.3 23.1 218 23-255 2-228 (296)
12 PRK13106 ubiA prenyltransferas 100.0 7.3E-33 1.6E-37 250.2 20.0 225 12-255 3-234 (300)
13 PRK12883 ubiA prenyltransferas 100.0 1.1E-32 2.5E-37 247.4 20.8 208 24-252 2-209 (277)
14 PRK13387 1,4-dihydroxy-2-napht 100.0 2E-32 4.4E-37 249.5 22.1 224 25-256 3-248 (317)
15 PRK13595 ubiA prenyltransferas 100.0 4.8E-32 1E-36 241.9 23.3 218 21-257 8-229 (292)
16 PRK12874 ubiA prenyltransferas 100.0 8E-32 1.7E-36 243.0 23.4 216 19-252 2-222 (291)
17 PRK06080 1,4-dihydroxy-2-napht 100.0 6.9E-32 1.5E-36 244.1 22.6 218 24-256 2-227 (293)
18 TIGR01475 ubiA_other putative 100.0 6.5E-32 1.4E-36 243.1 21.4 214 24-255 1-216 (282)
19 PRK12886 ubiA prenyltransferas 100.0 9.2E-32 2E-36 242.7 21.0 215 21-255 4-220 (291)
20 PRK12847 ubiA 4-hydroxybenzoat 100.0 1.7E-31 3.8E-36 240.6 22.4 217 21-256 3-224 (285)
21 PRK12869 ubiA protoheme IX far 100.0 1E-31 2.2E-36 241.4 20.0 214 24-255 1-217 (279)
22 PRK12895 ubiA prenyltransferas 100.0 1.5E-31 3.2E-36 239.9 20.7 214 24-255 2-217 (286)
23 PRK07419 1,4-dihydroxy-2-napht 100.0 5.6E-31 1.2E-35 238.2 22.7 222 20-257 7-234 (304)
24 PRK12878 ubiA 4-hydroxybenzoat 100.0 9.4E-31 2E-35 238.3 23.6 218 20-255 25-250 (314)
25 PLN02922 prenyltransferase 100.0 1.4E-30 3.1E-35 236.8 23.6 227 21-256 11-247 (315)
26 PRK12870 ubiA 4-hydroxybenzoat 100.0 3.6E-31 7.8E-36 238.8 19.0 212 21-252 5-221 (290)
27 PRK04375 protoheme IX farnesyl 100.0 4.5E-31 9.7E-36 239.0 19.2 216 22-255 7-225 (296)
28 TIGR00751 menA 1,4-dihydroxy-2 100.0 2.2E-30 4.7E-35 232.7 22.8 209 33-255 1-222 (284)
29 PRK12888 ubiA prenyltransferas 100.0 2E-30 4.3E-35 233.2 21.1 213 25-255 2-217 (284)
30 COG0382 UbiA 4-hydroxybenzoate 100.0 3.9E-30 8.5E-35 232.3 22.9 213 23-255 11-225 (289)
31 PRK12848 ubiA 4-hydroxybenzoat 100.0 3E-30 6.5E-35 232.2 21.0 213 23-255 3-220 (282)
32 TIGR01473 cyoE_ctaB protoheme 100.0 2.1E-30 4.6E-35 233.0 19.5 212 26-255 1-216 (280)
33 PRK13362 protoheme IX farnesyl 100.0 6E-30 1.3E-34 232.1 21.0 217 21-255 9-228 (306)
34 TIGR02235 menA_cyano-plnt 1,4- 100.0 1.7E-29 3.6E-34 227.1 23.1 213 28-256 2-220 (285)
35 COG1575 MenA 1,4-dihydroxy-2-n 100.0 1.2E-29 2.6E-34 225.4 21.5 220 23-256 6-235 (303)
36 TIGR01474 ubiA_proteo 4-hydrox 100.0 2E-29 4.4E-34 226.7 21.2 210 26-253 2-216 (281)
37 PRK13105 ubiA prenyltransferas 100.0 5.3E-29 1.2E-33 222.8 22.6 216 25-257 1-220 (282)
38 PLN02809 4-hydroxybenzoate non 100.0 2E-28 4.3E-33 220.5 22.8 208 22-247 3-216 (289)
39 PRK12876 ubiA prenyltransferas 100.0 2.9E-28 6.3E-33 219.0 22.0 216 23-255 2-230 (300)
40 PRK12873 ubiA prenyltransferas 100.0 3.2E-28 7E-33 218.7 21.8 213 21-252 3-224 (294)
41 PRK12875 ubiA prenyltransferas 100.0 3.1E-27 6.8E-32 211.8 23.8 216 21-255 4-223 (282)
42 PRK12871 ubiA prenyltransferas 100.0 9E-27 2E-31 210.5 22.2 213 23-254 3-232 (297)
43 PRK12872 ubiA prenyltransferas 100.0 6.4E-27 1.4E-31 210.8 19.5 214 23-257 2-221 (285)
44 COG0109 CyoE Polyprenyltransfe 99.9 3.9E-27 8.5E-32 208.9 13.1 217 21-255 14-233 (304)
45 PRK13592 ubiA prenyltransferas 99.9 7.3E-26 1.6E-30 201.5 17.7 178 71-264 53-238 (299)
46 PF01040 UbiA: UbiA prenyltran 99.9 1.7E-25 3.6E-30 197.6 17.4 162 71-244 30-193 (257)
47 PRK13591 ubiA prenyltransferas 99.9 2.7E-24 5.9E-29 192.9 21.9 167 74-256 68-238 (307)
48 PLN02776 prenyltransferase 99.9 2.9E-24 6.3E-29 195.9 20.9 203 31-252 1-208 (341)
49 PRK08238 hypothetical protein; 99.9 3E-21 6.5E-26 184.7 19.4 194 16-230 182-377 (479)
50 PRK12324 phosphoribose diphosp 99.9 3.3E-21 7.1E-26 173.7 18.5 145 20-174 6-152 (295)
51 KOG1381 Para-hydroxybenzoate-p 99.8 4.3E-20 9.2E-25 160.0 6.3 216 16-249 55-276 (353)
52 KOG1380 Heme A farnesyltransfe 99.6 3.9E-16 8.4E-21 138.5 5.2 212 22-255 91-310 (409)
53 KOG4581 Predicted membrane pro 99.5 1.1E-15 2.4E-20 130.0 0.3 222 21-254 57-286 (359)
54 COG1575 MenA 1,4-dihydroxy-2-n 93.3 0.71 1.5E-05 42.0 9.4 32 71-102 183-214 (303)
55 PRK12875 ubiA prenyltransferas 92.3 3.3 7.2E-05 37.4 12.5 55 74-130 175-229 (282)
56 PRK13591 ubiA prenyltransferas 91.9 1.3 2.7E-05 40.6 9.2 66 82-150 197-271 (307)
57 PRK13105 ubiA prenyltransferas 91.2 1.7 3.7E-05 39.3 9.3 53 76-130 172-224 (282)
58 PRK12872 ubiA prenyltransferas 91.2 1.2 2.6E-05 39.9 8.4 40 77-119 174-214 (285)
59 PLN02922 prenyltransferase 89.8 2.4 5.2E-05 38.9 9.1 40 76-117 200-239 (315)
60 TIGR01475 ubiA_other putative 89.5 3 6.6E-05 37.4 9.5 30 75-104 169-199 (282)
61 PRK13387 1,4-dihydroxy-2-napht 89.0 2.9 6.2E-05 38.4 9.1 44 76-121 201-244 (317)
62 PRK07419 1,4-dihydroxy-2-napht 89.0 3 6.6E-05 38.1 9.2 39 76-116 186-224 (304)
63 PRK13592 ubiA prenyltransferas 88.7 2.7 5.8E-05 38.2 8.4 48 208-255 57-106 (299)
64 PRK13106 ubiA prenyltransferas 87.8 5.5 0.00012 36.3 10.0 32 73-104 186-218 (300)
65 TIGR01474 ubiA_proteo 4-hydrox 86.3 4.4 9.4E-05 36.5 8.4 33 73-105 169-202 (281)
66 PRK12886 ubiA prenyltransferas 85.7 4 8.7E-05 37.0 7.9 29 77-105 175-204 (291)
67 PRK12884 ubiA prenyltransferas 85.6 2.2 4.8E-05 38.1 6.2 46 209-255 49-97 (279)
68 TIGR02235 menA_cyano-plnt 1,4- 85.3 6.8 0.00015 35.4 9.2 43 76-120 173-215 (285)
69 PLN00012 chlorophyll synthetas 85.2 7.9 0.00017 36.4 9.8 30 76-105 264-294 (375)
70 PRK12392 bacteriochlorophyll c 85.1 5 0.00011 37.1 8.3 30 76-105 192-222 (331)
71 PRK07566 bacteriochlorophyll/c 84.9 7 0.00015 35.7 9.2 29 77-105 202-231 (314)
72 PRK06080 1,4-dihydroxy-2-napht 84.6 5.4 0.00012 35.9 8.3 44 76-121 180-223 (293)
73 PRK12888 ubiA prenyltransferas 84.2 5.9 0.00013 35.8 8.3 31 75-105 170-201 (284)
74 PRK12847 ubiA 4-hydroxybenzoat 83.5 10 0.00022 34.1 9.5 31 75-105 176-207 (285)
75 TIGR00751 menA 1,4-dihydroxy-2 81.2 11 0.00024 34.0 8.9 40 77-118 177-216 (284)
76 TIGR02056 ChlG chlorophyll syn 80.9 13 0.00028 33.9 9.2 39 76-116 195-233 (306)
77 PRK12324 phosphoribose diphosp 80.8 3.4 7.4E-05 37.6 5.4 46 210-255 59-108 (295)
78 PRK12848 ubiA 4-hydroxybenzoat 80.7 11 0.00025 33.7 8.8 31 75-105 173-204 (282)
79 TIGR01476 chlor_syn_BchG bacte 80.3 15 0.00033 32.8 9.4 28 78-105 175-203 (283)
80 PRK12887 ubiA tocopherol phyty 80.2 24 0.00052 32.2 10.8 23 75-97 193-215 (308)
81 PRK11383 hypothetical protein; 79.8 28 0.0006 28.1 9.5 82 138-226 48-132 (145)
82 PF01040 UbiA: UbiA prenyltran 78.6 5.2 0.00011 34.7 5.8 48 208-255 34-85 (257)
83 PRK12870 ubiA 4-hydroxybenzoat 77.9 25 0.00055 31.7 10.1 34 73-106 175-209 (290)
84 PRK12874 ubiA prenyltransferas 77.8 23 0.00051 32.0 9.9 32 74-105 177-209 (291)
85 PRK09573 (S)-2,3-di-O-geranylg 77.3 12 0.00027 33.4 7.9 28 77-104 167-195 (279)
86 PRK12871 ubiA prenyltransferas 76.7 29 0.00062 31.6 10.1 31 75-105 186-217 (297)
87 PRK12883 ubiA prenyltransferas 75.7 15 0.00032 32.8 7.9 27 79-105 169-196 (277)
88 PRK12882 ubiA prenyltransferas 73.3 19 0.0004 32.1 8.0 38 76-116 169-207 (276)
89 PRK12895 ubiA prenyltransferas 73.1 65 0.0014 29.1 11.4 33 73-105 168-201 (286)
90 PRK12878 ubiA 4-hydroxybenzoat 72.2 61 0.0013 29.6 11.2 30 76-105 204-234 (314)
91 PF11990 DUF3487: Protein of u 70.4 15 0.00032 28.9 5.7 34 91-126 8-41 (121)
92 PRK05951 ubiA prenyltransferas 69.3 88 0.0019 28.2 13.1 35 77-113 184-218 (296)
93 PRK12869 ubiA protoheme IX far 69.3 9.4 0.0002 34.2 5.1 44 209-252 48-95 (279)
94 COG0382 UbiA 4-hydroxybenzoate 69.2 44 0.00096 30.0 9.5 24 74-97 177-200 (289)
95 TIGR03750 conj_TIGR03750 conju 68.1 22 0.00047 27.5 6.1 34 91-126 5-38 (111)
96 PLN02809 4-hydroxybenzoate non 66.6 12 0.00026 33.9 5.2 46 208-253 56-105 (289)
97 PRK04375 protoheme IX farnesyl 66.4 11 0.00024 34.1 4.9 44 209-252 56-103 (296)
98 TIGR01473 cyoE_ctaB protoheme 65.2 14 0.0003 33.1 5.4 46 209-254 47-96 (280)
99 PRK08238 hypothetical protein; 63.4 15 0.00033 35.8 5.5 47 209-255 238-288 (479)
100 PRK13595 ubiA prenyltransferas 60.4 1.3E+02 0.0027 27.5 10.6 52 78-131 183-234 (292)
101 PRK13362 protoheme IX farnesyl 59.2 18 0.00039 33.0 5.0 46 209-254 59-108 (306)
102 PRK12873 ubiA prenyltransferas 58.4 1.5E+02 0.0032 27.0 11.9 23 83-105 189-212 (294)
103 PLN02878 homogentisate phytylt 55.8 49 0.0011 29.9 7.0 37 77-116 169-206 (280)
104 PLN02776 prenyltransferase 51.4 37 0.0008 31.6 5.7 45 208-252 40-88 (341)
105 cd00867 Trans_IPPS Trans-Isopr 50.2 12 0.00027 32.0 2.3 41 209-249 158-208 (236)
106 PRK10581 geranyltranstransfera 43.0 23 0.0005 32.2 3.0 43 209-251 215-268 (299)
107 PRK12876 ubiA prenyltransferas 38.0 3.2E+02 0.0069 25.0 12.1 24 82-105 190-214 (300)
108 PF04341 DUF485: Protein of un 33.5 1.9E+02 0.0042 21.1 8.7 38 58-95 52-89 (91)
109 COG4125 Predicted membrane pro 30.2 1.1E+02 0.0025 24.5 4.6 18 77-94 54-71 (149)
110 PF10507 DUF2453: Protein of u 25.1 1.9E+02 0.0041 22.4 4.9 26 109-134 81-106 (111)
111 TIGR02748 GerC3_HepT heptapren 24.1 34 0.00073 31.4 0.8 32 209-240 202-244 (319)
112 TIGR02762 TraL_TIGR type IV co 22.7 1.8E+02 0.0039 21.6 4.4 31 92-126 7-37 (95)
113 PF00348 polyprenyl_synt: Poly 22.0 53 0.0011 28.9 1.6 39 205-243 174-223 (260)
114 PRK10299 PhoPQ regulatory prot 21.7 1.2E+02 0.0025 19.7 2.6 17 78-94 19-35 (47)
115 TIGR00267 conserved hypothetic 20.8 4.8E+02 0.01 21.4 9.7 17 71-87 35-51 (169)
116 COG0142 IspA Geranylgeranyl py 20.5 1.1E+02 0.0023 28.1 3.3 45 212-257 81-125 (322)
No 1
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=3.5e-39 Score=292.78 Aligned_cols=240 Identities=30% Similarity=0.489 Sum_probs=191.6
Q ss_pred hhhhhhhhhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCC-CChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhh
Q 023815 14 LKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGD-LTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKID 92 (276)
Q Consensus 14 ~~~~~~~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D 92 (276)
|++..++..+.+++++|++|||+.+++.+++..+++++.....+ .+...+...+..+++..+++.+++++|||+|+|.|
T Consensus 2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD 81 (308)
T PRK12887 2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID 81 (308)
T ss_pred CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 44566777889999999999999999999998887776432222 12112233334456666777777889999999999
Q ss_pred hhcCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHH
Q 023815 93 KINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGY 172 (276)
Q Consensus 93 ~~~~~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~ 172 (276)
++|||+||+++|++|+++++.+.+++.++++.+++..|++.+.. ..++.+++++||. ||+|+||+++.++++++...
T Consensus 82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~-~~~~~~lg~~Ys~--pP~rlKr~~~~~~~~i~~~~ 158 (308)
T PRK12887 82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLIT-VGISLLIGTAYSL--PPIRLKRFPLLAALCIFTVR 158 (308)
T ss_pred hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHcC--CchhhcccchhHHHHHHHHH
Confidence 99999999999999999999999999999999998888765543 4577789999999 99999999999988888888
Q ss_pred hhhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHH
Q 023815 173 GVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN 252 (276)
Q Consensus 173 g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~ 252 (276)
|..+.++.+...+.. .+....+++..++...++++++.++++.||++|+|+|++.|+||+|+++|+|++.+++..++.+
T Consensus 159 g~i~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~ 237 (308)
T PRK12887 159 GVIVNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTA 237 (308)
T ss_pred HHHHHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHH
Confidence 877777766542221 2222234555566556777888999999999999999999999999999999999999999888
Q ss_pred hhhhh
Q 023815 253 MDLED 257 (276)
Q Consensus 253 ~~~~~ 257 (276)
+|+..
T Consensus 238 ~y~~~ 242 (308)
T PRK12887 238 CYLGM 242 (308)
T ss_pred HHHHH
Confidence 88754
No 2
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=6.9e-39 Score=282.60 Aligned_cols=208 Identities=49% Similarity=0.822 Sum_probs=180.3
Q ss_pred hhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 023815 48 CCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGI 127 (276)
Q Consensus 48 ~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~ 127 (276)
+++|.+...|.++..+..++.+++++++++.|..++|||+|+|+||+|||+||+|||++|+++++.+...+.++|+.+++
T Consensus 7 ~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~ 86 (280)
T PLN02878 7 SLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGW 86 (280)
T ss_pred hHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45565555565555555666778999999999999999999999999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Q 023815 128 MIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVIT 207 (276)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 207 (276)
..|.+++.+.+..++++++.||.++||+|+||.+++...++....++...+++|.++++.++|++..+++.+++...+++
T Consensus 87 ~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~ 166 (280)
T PLN02878 87 IVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMC 166 (280)
T ss_pred HHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHH
Confidence 99987777777777788999998889999999999988888777777788899888788888864445555666655777
Q ss_pred HHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815 208 CMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 255 (276)
Q Consensus 208 ~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~ 255 (276)
++.+++++.||++|+||||+.|++|+|+++|+|++.+++..++.++|.
T Consensus 167 ~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~ 214 (280)
T PLN02878 167 FFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYA 214 (280)
T ss_pred HHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999999999999999998
No 3
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00 E-value=3.4e-36 Score=274.43 Aligned_cols=240 Identities=18% Similarity=0.203 Sum_probs=181.7
Q ss_pred CCCCccchhhh-hhhhhhhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChH-HHHHHHHHHHHHHHHHHHHhH
Q 023815 5 RVKSEDDNKLK-SFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPT-FFMEVFKTVVPAALMAIYMTA 82 (276)
Q Consensus 5 ~~~~~~~~~~~-~~~~~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~ 82 (276)
.|.+||++..+ +=.+...+++|+|++++||+++..++++++.|++.+. . .+.... .+..++.++++..+.++++|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 83 (314)
T PRK07566 6 ENTSKPRQLLGPKGASPTTSIWKARLQLMKPITWFPPMWAFLCGAVSSG-A-FGWTLENVLKLLAGMLLAGPLLCGTSQT 83 (314)
T ss_pred cCccccccccccccccccchHHHHHHHHhCCcchHHHHHHHHHHHHHcC-C-CCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666221 1224556789999999999999999998888877642 2 122221 111122234666778999999
Q ss_pred hhcccchhhhhhcCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchh
Q 023815 83 INQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAF 162 (276)
Q Consensus 83 ~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~ 162 (276)
+|||+|+|+|++|+|+||+++|++++++++.++.++.++++.+++.+|++...++ +.+++.+++||. ||+++||+++
T Consensus 84 ~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-l~~~~~~~~Yt~--gP~~lK~~~~ 160 (314)
T PRK07566 84 LNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAA-LLGLFLAWIYSA--PPLRLKQNGW 160 (314)
T ss_pred HhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHH-HHHHHHHHHhcC--Cccccccccc
Confidence 9999999999999999999999999999999999999999999888887665443 456677899999 9999999998
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhH
Q 023815 163 LAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERM 242 (276)
Q Consensus 163 ~~~~~v~~~~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a 242 (276)
++++++|..+|.++.+.++.+ +.+. ..++..++...+.+++..++++.||++|+|+|+++|+||+|+++|++++
T Consensus 161 ~g~i~vg~~~g~~~~~~g~~~----~~~~--~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a 234 (314)
T PRK07566 161 LGNYAVGLSYEGLPWWAGAAA----FGAG--LPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNA 234 (314)
T ss_pred hhhHHHHHHHHHHHHHHHHHH----hccC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHH
Confidence 899999998876555554432 1111 2333344444455566778899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 023815 243 IKELLNLFKNMDL 255 (276)
Q Consensus 243 ~~l~~~l~~~~~~ 255 (276)
++++..++.++++
T Consensus 235 ~~l~~~l~~~~~~ 247 (314)
T PRK07566 235 ARIACVVIDLFQL 247 (314)
T ss_pred HHHHHHHHHHHHH
Confidence 9998777666655
No 4
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=100.00 E-value=1.9e-36 Score=272.69 Aligned_cols=218 Identities=18% Similarity=0.245 Sum_probs=171.8
Q ss_pred HHHHHhhccchhHHHHHHHHHhhhhccccCCC-CChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCCCCccccC
Q 023815 26 KSLYRFTRPNTLNGLVIAVTSICCLPLQNLGD-LTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASG 104 (276)
Q Consensus 26 ~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G 104 (276)
|++++++||+++..++++++.|.+++.....+ +++.. .++.++++..+.+.++|.+|||+|+|+|++|+|+||+++|
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~--~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G 78 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWL--MLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG 78 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHHH--HHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence 46889999999999999999999887322122 33322 2222456778899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHHHHHH
Q 023815 105 DFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHI 184 (276)
Q Consensus 105 ~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~ 184 (276)
++|+++++....++..+++++++.++.+......+++++.+++||. ||+++||+++++++.++..++..+....+.
T Consensus 79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~--~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~-- 154 (283)
T TIGR01476 79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGHA-- 154 (283)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecC--chhhhccCCCccHHHHHHHHHHHHHHHHHH--
Confidence 9999999999999999999998887766533344566778999999 999999999889999998877544444332
Q ss_pred HHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815 185 QKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 255 (276)
Q Consensus 185 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~ 255 (276)
..+ ..++..++.....++++.++++.||+||+|+|+++|+||+|+++|+|++++++..++..+++
T Consensus 155 ---~~~---~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~ 219 (283)
T TIGR01476 155 ---IFA---PLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQA 219 (283)
T ss_pred ---HhC---CCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHH
Confidence 222 13333343334555677888999999999999999999999999999999998887666664
No 5
>PLN00012 chlorophyll synthetase; Provisional
Probab=100.00 E-value=2.3e-35 Score=273.16 Aligned_cols=223 Identities=20% Similarity=0.234 Sum_probs=168.4
Q ss_pred hhhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChH-HHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCCC
Q 023815 20 GFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPT-FFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPD 98 (276)
Q Consensus 20 ~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~ 98 (276)
..++++|+|++++||++|..+++++++|++.+ +++ ++... +...++.++++..+.++++|.+|||+|+|.|++|+|+
T Consensus 80 ~~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g~~-~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~ 157 (375)
T PLN00012 80 QETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-GNF-HWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPY 157 (375)
T ss_pred cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-CCC-CchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCC
Confidence 44567999999999999999999999998853 322 22211 1111233456677888999999999999999999999
Q ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHh-------chhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHH
Q 023815 99 LPLASGDFSIKTGVAITLTCAMMSLAMGIMI-------GSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIG 171 (276)
Q Consensus 99 Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~-------~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~ 171 (276)
||+++|++++++++.....+..+++.+++.+ +++.+. ..+++++++++||. ||+++||++++|++.+|..
T Consensus 158 Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~-l~l~gi~l~~~YS~--pPl~lKr~~~~G~v~lG~~ 234 (375)
T PLN00012 158 RPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFY-LALGGSLLSYIYSA--PPLKLKQNGWIGNYALGAS 234 (375)
T ss_pred CCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHHHHhhhhcC--CchhhhHhccHhHHHHHHH
Confidence 9999999999999998777777666666443 222333 23456677899999 9999999999899999888
Q ss_pred HhhhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHH
Q 023815 172 YGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFK 251 (276)
Q Consensus 172 ~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~ 251 (276)
++.++..+++. +.| .+++..++...+.++++.++++.||++|+|+|+++|++|+||++|++++++++..++.
T Consensus 235 ~~~lp~~~g~a-----~~g---~~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~ 306 (375)
T PLN00012 235 YISLPWWAGQA-----LFG---TLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSID 306 (375)
T ss_pred HHHHHHHHHHH-----HcC---CCCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHH
Confidence 87544433331 334 2344444444566678889999999999999999999999999999999999876555
Q ss_pred Hhhh
Q 023815 252 NMDL 255 (276)
Q Consensus 252 ~~~~ 255 (276)
+..+
T Consensus 307 l~~l 310 (375)
T PLN00012 307 ITQL 310 (375)
T ss_pred HHHH
Confidence 5444
No 6
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=100.00 E-value=4.4e-35 Score=266.21 Aligned_cols=224 Identities=19% Similarity=0.260 Sum_probs=171.8
Q ss_pred hhhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChH-HHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCCC
Q 023815 20 GFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPT-FFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPD 98 (276)
Q Consensus 20 ~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~ 98 (276)
...+++|+|++++||+++..++++++.|+..+ +++ +++.. ....++.++++..+.++++|.+|||+|+|.|+.|+|+
T Consensus 11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~-~~~-~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~ 88 (306)
T TIGR02056 11 GETNIWKIRLQLMKPITWIPLIWGVVCGAAAS-GNF-HWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEPY 88 (306)
T ss_pred cchhHHHHHHHHcChHhhHHHHHHHHHHHHHc-CCC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCC
Confidence 45677899999999999999999998888764 222 22111 1111222346667889999999999999999999999
Q ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHhch------hHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHH
Q 023815 99 LPLASGDFSIKTGVAITLTCAMMSLAMGIMIGS------PPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGY 172 (276)
Q Consensus 99 Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~------~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~ 172 (276)
||+++|++++++++..++.+.++++++++.+.. +..+...+++++.+++||. ||+++||++++|++.++..+
T Consensus 89 Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg~~~ 166 (306)
T TIGR02056 89 RPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSA--PPLKLKQNGWLGNFALGASY 166 (306)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcC--ChhhhhhcccHHHHHHHHHH
Confidence 999999999999999999888888887765421 2223334566778999999 99999999988999998888
Q ss_pred hhhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHH
Q 023815 173 GVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN 252 (276)
Q Consensus 173 g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~ 252 (276)
+..+..+++. ..| ++++..++.....++++.++++.||++|+|+|+++|+||+|+++|+|++++++..++..
T Consensus 167 ~~~~~~~~~a-----~~g---~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~ 238 (306)
T TIGR02056 167 IALPWWAGHA-----LFG---ELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDI 238 (306)
T ss_pred HHHHHHHHHH-----HhC---CCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHH
Confidence 7544444332 233 23444444445666788899999999999999999999999999999999999876655
Q ss_pred hhh
Q 023815 253 MDL 255 (276)
Q Consensus 253 ~~~ 255 (276)
++.
T Consensus 239 ~~~ 241 (306)
T TIGR02056 239 FQG 241 (306)
T ss_pred HHH
Confidence 443
No 7
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=100.00 E-value=6.4e-34 Score=260.15 Aligned_cols=223 Identities=19% Similarity=0.349 Sum_probs=164.1
Q ss_pred hhhHHHHHHHHhhccchhHHHHHHHHHhhhhccccC-CCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCCC
Q 023815 20 GFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNL-GDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPD 98 (276)
Q Consensus 20 ~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~ 98 (276)
.+.+++|+|++++||+++. ..++.+.|.++|.++. ++.....+ .+..++....+...++|++|||+|+|+|++|+|.
T Consensus 7 ~~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l-~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rt 84 (331)
T PRK12392 7 GFVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLL-LLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPT 84 (331)
T ss_pred chhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHH-HHHHHHHHHHHHHHHHhHHhcceeecccccCCCC
Confidence 3567799999999999887 6666666766775432 22221111 1111223334556678999999999999999999
Q ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHhch-------hHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHH
Q 023815 99 LPLASGDFSIKTGVAITLTCAMMSLAMGIMIGS-------PPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIG 171 (276)
Q Consensus 99 Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~-------~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~ 171 (276)
||+++|++|+++++...+.+..+++.++..++. +..++..+++++++++||. ||+++||+++++++.+|..
T Consensus 85 Rpl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~ 162 (331)
T PRK12392 85 RPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFS 162 (331)
T ss_pred CCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHH
Confidence 999999999999999999999998888766542 2223333456778899999 9999999998899999998
Q ss_pred HhhhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHH
Q 023815 172 YGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFK 251 (276)
Q Consensus 172 ~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~ 251 (276)
++..+..... ...+. .++..++.....++++.+.+++||++|+|+|++.|+||+|+++|++++.+++.....
T Consensus 163 ~~~~~~~~~~-----a~~g~---~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~ 234 (331)
T PRK12392 163 YGFITFLSAN-----ALFSD---IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIID 234 (331)
T ss_pred HHHHHHHHHH-----HHhcC---CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHH
Confidence 8754433221 13342 333334444456678889999999999999999999999999999999888877764
Q ss_pred Hhh
Q 023815 252 NMD 254 (276)
Q Consensus 252 ~~~ 254 (276)
+..
T Consensus 235 ~~~ 237 (331)
T PRK12392 235 LVF 237 (331)
T ss_pred HHH
Confidence 433
No 8
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=1.9e-34 Score=259.15 Aligned_cols=211 Identities=20% Similarity=0.289 Sum_probs=168.0
Q ss_pred HHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCCCCcccc
Q 023815 24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLAS 103 (276)
Q Consensus 24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~ 103 (276)
++|+|++++||+++..++++.+.|++++.+.. .++..+ +.+.++.++.++++|++|||+|+|.|++|+|+||+++
T Consensus 2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~--~~~~~~---~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s 76 (279)
T PRK09573 2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFK--IDLKGI---ILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS 76 (279)
T ss_pred CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCC--cchHHH---HHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence 37899999999999999999999988885432 232221 1235677889999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHHHHH
Q 023815 104 GDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIH 183 (276)
Q Consensus 104 G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~ 183 (276)
|++++++++.++..+.++++.+++.+|+....++ +.+.+..++||. ++||++.++|+++|..+|..+..++..
T Consensus 77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~- 149 (279)
T PRK09573 77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIA-LLNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLA- 149 (279)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999888887666554 455567889997 799999889999999999665444322
Q ss_pred HHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815 184 IQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 255 (276)
Q Consensus 184 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~ 255 (276)
+.+ .... ++.....++|+++.++.||++|+|+|+++|+||+|+++|+|++.++.........+
T Consensus 150 ----~~~---~~~~--~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~ 212 (279)
T PRK09573 150 ----VFN---VLRI--IILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIV 212 (279)
T ss_pred ----Hcc---chHH--HHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHH
Confidence 112 1122 22223445667788999999999999999999999999999999998877766555
No 9
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.2e-33 Score=253.49 Aligned_cols=213 Identities=21% Similarity=0.272 Sum_probs=167.2
Q ss_pred HHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCCCCcccc
Q 023815 24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLAS 103 (276)
Q Consensus 24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~ 103 (276)
++|+|++++||+++..+.++.+.|++++.+... +.... +.++++.++.++++|++||++|+|.|++|+|+||+++
T Consensus 3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~--~~~~~---~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~ 77 (276)
T PRK12882 3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILS--SPSLT---GLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS 77 (276)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc--hHHHH---HHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence 478999999999999999999999988844321 11111 1235677889999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHHHHH
Q 023815 104 GDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIH 183 (276)
Q Consensus 104 G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~ 183 (276)
|++|++|++.++..+.++|+++++.+++....++ ..+.+..++||. |+||++.++|++++...|..+..+..
T Consensus 78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~-~~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~-- 149 (276)
T PRK12882 78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIA-LFNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGA-- 149 (276)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999988887665443 455566889998 89999988999999888754444432
Q ss_pred HHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815 184 IQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 255 (276)
Q Consensus 184 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~ 255 (276)
..+. ......+......++++.+++++||++|+|+|+++|+||+|+++|+|++.+++..+++...+
T Consensus 150 ----~~~~--~~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~ 215 (276)
T PRK12882 150 ----AVGT--EGLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVA 215 (276)
T ss_pred ----Hhcc--cchHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHH
Confidence 2221 11111222233445567789999999999999999999999999999999998888776555
No 10
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5e-33 Score=249.91 Aligned_cols=212 Identities=22% Similarity=0.336 Sum_probs=167.9
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCCCCccc
Q 023815 23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLA 102 (276)
Q Consensus 23 ~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~Rpl~ 102 (276)
+++|+|++++||+++..+.++.+.|.++|.+..+ ....+ ...++.++.++++|++||++|+|+|++|+|+||++
T Consensus 2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~--~~~~~----l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~ 75 (279)
T PRK12884 2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP--LDEAL----LGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP 75 (279)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCc--hHHHH----HHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence 4789999999999999999999899988854322 12221 23467788999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHHHH
Q 023815 103 SGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFI 182 (276)
Q Consensus 103 ~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~ 182 (276)
+|++++++++.++.++.+++++++..+|+....+. +++.+.+++||. ++||++++++++++..+|..+..++..
T Consensus 76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~ 149 (279)
T PRK12884 76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVV-ILVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA 149 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888887665543 456677899998 799999889999998887443333221
Q ss_pred HHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815 183 HIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 255 (276)
Q Consensus 183 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~ 255 (276)
.+. .+...++.....++|+.+.++.+|++|+|+|+++|+||+|+++|+|++.+++..++...++
T Consensus 150 ------~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~ 213 (279)
T PRK12884 150 ------VGE---LNEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVL 213 (279)
T ss_pred ------hCC---CchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHH
Confidence 121 1112333334556677788999999999999999999999999999999988777666555
No 11
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.7e-32 Score=248.28 Aligned_cols=218 Identities=16% Similarity=0.177 Sum_probs=166.9
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC-----C
Q 023815 23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK-----P 97 (276)
Q Consensus 23 ~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~-----~ 97 (276)
+++|.+++.+||+++..+..+++.|.++|.....++++.... .++++.++++.++|.+|||+|+|.|..++ |
T Consensus 2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~~l---l~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~ 78 (296)
T PRK05951 2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLLGA---LMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR 78 (296)
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHH---HHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence 468999999999999999999999998886544466654322 23578889999999999999966555444 6
Q ss_pred CCccccCCCCHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHh
Q 023815 98 DLPLASGDFSIKTGVAITLTCAMMSLAMGIM----IGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYG 173 (276)
Q Consensus 98 ~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~----~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g 173 (276)
+||+++|++|+++++..+.++..+++.++.. .+.+.+ ...+++.+.++.||. ||+++|+++ +|++.++..+|
T Consensus 79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l-~l~~~~~~~~~~Yt~--~P~~lky~g-lGe~~v~~~~g 154 (296)
T PRK05951 79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAV-TLALLGVFLWTCYMG--PPFFLKYRW-LGEHLVFYAWS 154 (296)
T ss_pred CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHcC--CCcccCCCC-chHHHHHHHHH
Confidence 8999999999999999998877776655432 243333 334567788999999 999999998 69999999999
Q ss_pred hhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHh
Q 023815 174 VGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNM 253 (276)
Q Consensus 174 ~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~ 253 (276)
..++++.++. ++ + .++...+.......+++.+..+.||+||+|+|+++|+||+|+++|+|++ ++...+...+
T Consensus 155 ~~~vlg~~~~-~~---~---~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~ 226 (296)
T PRK05951 155 HMLVMGLIYV-WL---G---NLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSP 226 (296)
T ss_pred HHHHHHHHHH-Hh---C---cccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHH
Confidence 8787877664 11 2 2233334434455566777889999999999999999999999999999 5554544444
Q ss_pred hh
Q 023815 254 DL 255 (276)
Q Consensus 254 ~~ 255 (276)
|+
T Consensus 227 ~~ 228 (296)
T PRK05951 227 YV 228 (296)
T ss_pred HH
Confidence 43
No 12
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=7.3e-33 Score=250.21 Aligned_cols=225 Identities=15% Similarity=0.134 Sum_probs=168.8
Q ss_pred hhhhhhhhhhhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhh
Q 023815 12 NKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKI 91 (276)
Q Consensus 12 ~~~~~~~~~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~ 91 (276)
++|++... .+.++|+|+|++||++....+.+.+.|+.+|.++.+ ++..+ +.+.++.+++++++|++||++|+|+
T Consensus 3 ~~~~~~~~-~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~--~~~~l---~l~~lg~~l~~~a~~~~Nd~~D~di 76 (300)
T PRK13106 3 WDPGGLNN-TRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIP--PISTL---ILIFLALFFLRTAGMTNDNLADLEI 76 (300)
T ss_pred CCcccchh-hHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCC--CHHHH---HHHHHHHHHHHHHHHHHHhhHHhcc
Confidence 35655443 556899999999999998888888889888855432 23221 1235677889999999999999999
Q ss_pred hhhcC--CCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHH
Q 023815 92 DKINK--PDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIM 169 (276)
Q Consensus 92 D~~~~--~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~ 169 (276)
|++|+ ++||+++|++|++|++.+..++.+.+++++..+|+.+..+.. .+.+..+.|+. +||+++++++++|
T Consensus 77 D~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg 149 (300)
T PRK13106 77 DAKNPRTKNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYPY------MKRYTAFANYHLA 149 (300)
T ss_pred ccCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HhcCCcchHHHHH
Confidence 99985 589999999999999999877777777777778876665543 34445677875 8999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHhhcccc-----cchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHH
Q 023815 170 IGYGVGIQFSFFIHIQKYVLGRSV-----VITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIK 244 (276)
Q Consensus 170 ~~~g~~~~l~~~~~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~ 244 (276)
..+|..+..+ +.+ +.|... ..+...++.....++|+.+++++|+++|+|+|+++|+||+|+++| +++++
T Consensus 150 ~~~~~~~~~G-~~a----~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~ 223 (300)
T PRK13106 150 SIQGLAVFSG-AVA----VLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALT 223 (300)
T ss_pred HHHHHHHHHH-HHH----HcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHH
Confidence 9988544433 432 223110 011112222234567888999999999999999999999999999 88999
Q ss_pred HHHHHHHHhhh
Q 023815 245 ELLNLFKNMDL 255 (276)
Q Consensus 245 l~~~l~~~~~~ 255 (276)
++..++.++.+
T Consensus 224 ~~~~~~~~~v~ 234 (300)
T PRK13106 224 FAGLNQLFSVV 234 (300)
T ss_pred HHHHHHHHHHH
Confidence 88888777666
No 13
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=100.00 E-value=1.1e-32 Score=247.38 Aligned_cols=208 Identities=23% Similarity=0.295 Sum_probs=160.6
Q ss_pred HHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCCCCcccc
Q 023815 24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLAS 103 (276)
Q Consensus 24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~ 103 (276)
++|+|++++||+++..+.++.+.|++++.++.++ +.... ...++.++.++++|++|||+|+|+|+.|+|+||+++
T Consensus 2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~--~~~~~---l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s 76 (277)
T PRK12883 2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP--IKTLI---LIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR 76 (277)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc--HHHHH---HHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence 3789999999999999998888898887443222 22111 123556677888999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHHHHH
Q 023815 104 GDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIH 183 (276)
Q Consensus 104 G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~ 183 (276)
|++++++++.++.++.++|+.+++..|+..+.++ +.+.+.+++|+. ++|++++++|+++|..+|..+..+ +.+
T Consensus 77 G~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g-~~a 149 (277)
T PRK12883 77 GAMSRKAALYYSLLLFAVGLALAYLINIEAFLFA-LGAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYG-AIA 149 (277)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHH-HHH
Confidence 9999999999999999999998888887666544 455667899998 889998889999999998655433 221
Q ss_pred HHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHH
Q 023815 184 IQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN 252 (276)
Q Consensus 184 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~ 252 (276)
+ + ..+...+.. .+.+++..++++.||++|+|+|+++|+||+|+++|+|+++++...+...
T Consensus 150 ----~-~---~~~~~~~~~-~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~~ 209 (277)
T PRK12883 150 ----V-G---RIGLAGYLA-ICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVL 209 (277)
T ss_pred ----h-c---cccHHHHHH-HHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHHHH
Confidence 1 2 122222222 2344456678899999999999999999999999999999987766433
No 14
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=100.00 E-value=2e-32 Score=249.51 Aligned_cols=224 Identities=16% Similarity=0.080 Sum_probs=171.2
Q ss_pred HHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC----CCCc
Q 023815 25 LKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK----PDLP 100 (276)
Q Consensus 25 l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~----~~Rp 100 (276)
+|.|++++||++...++++++.|.++|.....++++.... .++++.++.|.++|.+|||+|++.|..++ ++|+
T Consensus 3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~~l---l~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~ 79 (317)
T PRK13387 3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLLFL---AFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG 79 (317)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHHHH---HHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence 6889999999999999999999999986444456654322 23567788999999999999997655443 5799
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHH----HHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhH
Q 023815 101 LASGDFSIKTGVAITLTCAMMSLAMG----IMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGI 176 (276)
Q Consensus 101 l~~G~is~~~a~~~~~~~~~~g~~l~----~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~ 176 (276)
+++|.+++|+++..+..+..++++++ +..|++. +...+++++.+++||. ||+++||++ +||+.++..+|..+
T Consensus 80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~-l~igl~g~~~~~~Yt~--gP~~l~y~g-LGe~~v~i~~G~~~ 155 (317)
T PRK13387 80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLL-LVIGLICFAIGILYTG--GPLPLSRMP-LGEIFSGLTMGFGI 155 (317)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-HHHHHHHHHHhhhhcC--CCcccccCc-cHHHHHHHHHHHHH
Confidence 99999999999999988888777644 4455433 3445678888999999 999999999 69999999999777
Q ss_pred HHHHHHHHHHHhhccc--------cc--chhH----HHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhH
Q 023815 177 QFSFFIHIQKYVLGRS--------VV--ITRS----LIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERM 242 (276)
Q Consensus 177 ~l~~~~~~~~~~~g~~--------~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a 242 (276)
..+.++. ++...+.. .+ ++.. .++......+.+.++++.||+||+|+|+++|+||+|+++|+|++
T Consensus 156 v~g~~yv-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a 234 (317)
T PRK13387 156 FLLAVYI-NTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKG 234 (317)
T ss_pred HHHHHHH-hcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhH
Confidence 7776553 22111100 00 0000 11133455566677899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q 023815 243 IKELLNLFKNMDLE 256 (276)
Q Consensus 243 ~~l~~~l~~~~~~~ 256 (276)
+++...+...+|+.
T Consensus 235 ~~l~~~l~~~a~l~ 248 (317)
T PRK13387 235 VVLFAILFYASYLA 248 (317)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998888873
No 15
>PRK13595 ubiA prenyltransferase; Provisional
Probab=100.00 E-value=4.8e-32 Score=241.88 Aligned_cols=218 Identities=19% Similarity=0.225 Sum_probs=162.7
Q ss_pred hhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCCCCc
Q 023815 21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLP 100 (276)
Q Consensus 21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~Rp 100 (276)
....++.+++.+||.+|+.+..++.+|+..+. ...+..+..+. .++......+.++|++|||+|+|+|++|+|+|+
T Consensus 8 ~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g-~~~~~~~~~~~---l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~ 83 (292)
T PRK13595 8 ILLPLRRLLLISRPALWVNTVGTLVTGVWLTG-HLYTLDPGVLP---LLLYLTLPFNLLIYGLNDLADRETDAASPRKGG 83 (292)
T ss_pred hhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhc-CcccchhHHHH---HHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCC
Confidence 34668889999999999999999999997763 22232113221 124556678889999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHH----HHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhH
Q 023815 101 LASGDFSIKTGVAITLTCAMM----SLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGI 176 (276)
Q Consensus 101 l~~G~is~~~a~~~~~~~~~~----g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~ 176 (276)
+++|++++++++.+...+..+ ++.+++..|+....+ ..++.+++++||. ||+|+|+++++++++. ...|.
T Consensus 84 i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l-~~v~~~l~~~YS~--pPlRlK~rp~l~~l~~-~~~g~-- 157 (292)
T PRK13595 84 WQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLL-LLLYAALFVGYSL--PPLRFKARPFLDGLSN-AAYAL-- 157 (292)
T ss_pred CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHcc--CccchhcCcchhHHHH-HHHHH--
Confidence 999999999999876554444 455566677655543 3466688999999 9999999999988775 34442
Q ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhhh
Q 023815 177 QFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLE 256 (276)
Q Consensus 177 ~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~~ 256 (276)
+.+... .+.|. ......+ ....+|..+++++++++|+|+||+.|+||+|+++|+|++.+++..+++++.++
T Consensus 158 p~~~~~----~~~g~---~~~~~~l--~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~ 228 (292)
T PRK13595 158 PLALPA----LALGA---PVPWPPL--LALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGAL 228 (292)
T ss_pred HHHHHH----HHcCC---cchHHHH--HHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHH
Confidence 222221 13342 1122222 23345678999999999999999999999999999999999999998877765
Q ss_pred h
Q 023815 257 D 257 (276)
Q Consensus 257 ~ 257 (276)
.
T Consensus 229 ~ 229 (292)
T PRK13595 229 L 229 (292)
T ss_pred H
Confidence 5
No 16
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=8e-32 Score=242.97 Aligned_cols=216 Identities=20% Similarity=0.235 Sum_probs=165.7
Q ss_pred hhhhHHHHHHHHhhccchhHHHHHHHHHhhhhcccc---CCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhc
Q 023815 19 AGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQN---LGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKIN 95 (276)
Q Consensus 19 ~~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~ 95 (276)
+++++++|+|+|++||++.+.++...+.|.++|... ....++..+ +.+.++.+++++++|++|||+|+|.|++|
T Consensus 2 ~~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~~~---~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~ 78 (291)
T PRK12874 2 KKFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFKLL---ILGILAAVSARNFAMAFNRLVDRDIDKDN 78 (291)
T ss_pred chHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHHHH---HHHHHHHHHHHHHHHHHHhhhhhccccCC
Confidence 356678999999999999998888888888777421 112333322 12356777889999999999999999999
Q ss_pred C--CCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHh
Q 023815 96 K--PDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYG 173 (276)
Q Consensus 96 ~--~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g 173 (276)
+ ++||+++|++|++|++.+++.+.++++.+++.+|+.+..+. +..+.....|+. +||++.+++++.|...|
T Consensus 79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~g~~~~ 151 (291)
T PRK12874 79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLS-FPFLIVLGGYSY------FKRFSSLAHLVLGLSLG 151 (291)
T ss_pred CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------hcccccccHHHHHHHHH
Confidence 7 58999999999999999999888888888888887666554 344556788986 89999999998888877
Q ss_pred hhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHH
Q 023815 174 VGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN 252 (276)
Q Consensus 174 ~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~ 252 (276)
.. ++.+|.+ +.|. .+...++.....++|+.+.++.++++|+|+|+++|++|+|+++|++++.++...+...
T Consensus 152 ~~-~l~G~~a----v~g~---~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~ 222 (291)
T PRK12874 152 LA-PIAGVVA----VLGE---IPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLL 222 (291)
T ss_pred HH-HHHHHHH----HcCC---CcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHH
Confidence 44 4444543 3332 2322233334556788899999999999999999999999999999998876655543
No 17
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=100.00 E-value=6.9e-32 Score=244.12 Aligned_cols=218 Identities=19% Similarity=0.199 Sum_probs=170.6
Q ss_pred HHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccch--hhhhh--cCCCC
Q 023815 24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDV--KIDKI--NKPDL 99 (276)
Q Consensus 24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~--~~D~~--~~~~R 99 (276)
.+|.|++++||+++..+.++.+.|.++|... .++++..+. .++++.++.+.++|.+|||+|+ +.|+. ++|+|
T Consensus 2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~~~l---l~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r 77 (293)
T PRK06080 2 TFKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPLLAL---LALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLR 77 (293)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHHHHH---HHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcc
Confidence 3788999999999999999999999888432 344443221 2356778899999999999999 46753 56799
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhh
Q 023815 100 PLASGDFSIKTGVAITLTCAMMSLAMGIM----IGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVG 175 (276)
Q Consensus 100 pl~~G~is~~~a~~~~~~~~~~g~~l~~~----~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~ 175 (276)
|+++|++|+++++..+..+.+++++++.. .+.+.+. ..+++++.+++||. ||.++|+++ +||+.++..+|..
T Consensus 78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~-~~~~~~~~~~~Ys~--~p~~~~~~g-lge~~~~~~~G~~ 153 (293)
T PRK06080 78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLL-LGLLCIAAAILYTG--GPKPYGYTG-LGELFVGVFFGLV 153 (293)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHhhhhcC--CCCccCCCC-cHHHHHHHHHHHH
Confidence 99999999999999988888777666543 3443333 33566678899999 999999998 5999999999976
Q ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815 176 IQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 255 (276)
Q Consensus 176 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~ 255 (276)
...+.++. + .+ ..+...++...+.++++.+.++.||++|+|+|+++|+||+|+++|+|++++++..++.++++
T Consensus 154 ~~~~~~~~-~---~~---~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~ 226 (293)
T PRK06080 154 IVLGTYYL-Q---AG---TVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYL 226 (293)
T ss_pred HHHHHHHH-h---cC---CCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHH
Confidence 66665542 1 12 23344455455667788889999999999999999999999999999999999999888887
Q ss_pred h
Q 023815 256 E 256 (276)
Q Consensus 256 ~ 256 (276)
.
T Consensus 227 ~ 227 (293)
T PRK06080 227 C 227 (293)
T ss_pred H
Confidence 4
No 18
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=100.00 E-value=6.5e-32 Score=243.06 Aligned_cols=214 Identities=15% Similarity=0.163 Sum_probs=163.7
Q ss_pred HHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhc--CCCCcc
Q 023815 24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKIN--KPDLPL 101 (276)
Q Consensus 24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~--~~~Rpl 101 (276)
++|+|+|++||++...+......|+++|.++.+ ++... +.+.++.+++++++|++|||+|+|+|++| +|+||+
T Consensus 1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~--~~~~~---~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl 75 (282)
T TIGR01475 1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLP--GLKTL---ILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPL 75 (282)
T ss_pred CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCC--CHHHH---HHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCC
Confidence 368999999999998887777778888755433 33221 12356788899999999999999999998 579999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHHH
Q 023815 102 ASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFF 181 (276)
Q Consensus 102 ~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~ 181 (276)
++|++++++++.+++++.+++++++..+|..+..++ ..+.+..+.|+. +||++.+++++.|...+..+ +.+|
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~-~~g~ 147 (282)
T TIGR01475 76 VSGLISKKEARTMIILSLALFLSASYFLNPLAFILS-PLVLLVLIIYPY------TKRFTFLCHYVLGSTYGLAP-LAGW 147 (282)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------HhccccccHHHHHHHHHHHH-HHHH
Confidence 999999999999998888888888887887665443 344455788975 89999899999988877533 4445
Q ss_pred HHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815 182 IHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 255 (276)
Q Consensus 182 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~ 255 (276)
.+ +.|. .+.....++.....++|+.+.+++|+++|+|+|+++|+||+|+++|+|+++++...+..++++
T Consensus 148 ~a----~~g~-~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~ 216 (282)
T TIGR01475 148 VA----VIGT-ISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFI 216 (282)
T ss_pred HH----HhCC-ccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHH
Confidence 43 2232 111122233334566778889999999999999999999999999999999998887766665
No 19
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=9.2e-32 Score=242.68 Aligned_cols=215 Identities=15% Similarity=0.122 Sum_probs=164.1
Q ss_pred hhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC--CC
Q 023815 21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK--PD 98 (276)
Q Consensus 21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~--~~ 98 (276)
..+++|+|+|++||++......+.+.|+++|.++.++ +..+ +.+.++.++.++++|++|||+|+|.|++|+ ++
T Consensus 4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~--~~~l---~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~ 78 (291)
T PRK12886 4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG--ASQL---DWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG 78 (291)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC--HHHH---HHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence 4567999999999999988888888899888544332 2211 123567788899999999999999999997 58
Q ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHH
Q 023815 99 LPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQF 178 (276)
Q Consensus 99 Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l 178 (276)
||+++|++|++|+..+...+.+.++.+++..|+.+..++. .+.+..+.|+. +||++.+++++.|...+. +++
T Consensus 79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~~g~~~~~-~~l 150 (291)
T PRK12886 79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PALFFLLLYSY------CKRFTALAHVVLGFCLAL-APL 150 (291)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh------hhccccccHHHHHHHHHH-HHH
Confidence 9999999999999998766666666666677876665543 44556788986 899998999888887664 455
Q ss_pred HHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815 179 SFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 255 (276)
Q Consensus 179 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~ 255 (276)
++|.+ ..|. .+...++.....++|+.+.++.++++|+|+|+++|+||+|+++|+++++++...+..+.++
T Consensus 151 ~g~~a----~~g~---~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~ 220 (291)
T PRK12886 151 GAWIA----IRGT---IELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIG 220 (291)
T ss_pred HHHHH----HcCC---CcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHH
Confidence 66654 2232 2333344334556778888899999999999999999999999999999988776655555
No 20
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=1.7e-31 Score=240.62 Aligned_cols=217 Identities=17% Similarity=0.217 Sum_probs=167.0
Q ss_pred hhHHHHHHHHhhccchhHH---HHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC-
Q 023815 21 FLKNLKSLYRFTRPNTLNG---LVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK- 96 (276)
Q Consensus 21 ~~~~l~~~~~l~Rp~~~~~---~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~- 96 (276)
.++++++|+|++||++... +.++.+.|.++|..+. ..++... +.+.++.+++++++|++|||+|+|.|++|+
T Consensus 3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~~~---ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~R 78 (285)
T PRK12847 3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDISLL---VLFIIGSVLMRSAGCIINDIFDRKIDKHVAR 78 (285)
T ss_pred hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHHHH---HHHHHHHHHHHHHHHHHHhHHHhhhccCCCc
Confidence 4567999999999997654 4567778888875432 2333221 223567788999999999999999999765
Q ss_pred -CCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhh
Q 023815 97 -PDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVG 175 (276)
Q Consensus 97 -~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~ 175 (276)
++||+++|+++++|++.++..+.++++.+++.+|+..+.++ +++.+..+.||. .||++.+++++.|..++.
T Consensus 79 t~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~- 150 (285)
T PRK12847 79 TKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLS-FIAVILIVLYPL------MKRFFYWPQLFLGFTFNM- 150 (285)
T ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhccc------cccCCcccHHHHHHHHHH-
Confidence 48999999999999999999999999988888887666544 455666888986 888888899888887774
Q ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815 176 IQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 255 (276)
Q Consensus 176 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~ 255 (276)
.++++|.+ ..| ..+...++.....++|+.+.++.++++|+|+|+++|+||+|+++|+|++.++.....+..++
T Consensus 151 ~~l~~~~a----~~g---~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~ 223 (285)
T PRK12847 151 GILMAFAA----VQN---QLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLIL 223 (285)
T ss_pred HHHHHHHH----HcC---CCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHH
Confidence 34444543 223 23333444444566788899999999999999999999999999999999998888777666
Q ss_pred h
Q 023815 256 E 256 (276)
Q Consensus 256 ~ 256 (276)
.
T Consensus 224 ~ 224 (285)
T PRK12847 224 W 224 (285)
T ss_pred H
Confidence 3
No 21
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=100.00 E-value=1e-31 Score=241.36 Aligned_cols=214 Identities=15% Similarity=0.190 Sum_probs=163.9
Q ss_pred HHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC--CCCcc
Q 023815 24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK--PDLPL 101 (276)
Q Consensus 24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~--~~Rpl 101 (276)
++|+|+|++||++.....++.+.|+++|.++ ..++..+. ...++..+.++++|++|||+|+|.|++|+ |+||+
T Consensus 1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~--~~~~~~~~---l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl 75 (279)
T PRK12869 1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKH--GVSWLPLI---PLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT 75 (279)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHhccC--CCCHHHHH---HHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence 3689999999999888899999999888433 22332211 12456777899999999999999999987 69999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHH
Q 023815 102 ASGDFSIKTGVAITLTCAMMSLAMGIM-IGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSF 180 (276)
Q Consensus 102 ~~G~is~~~a~~~~~~~~~~g~~l~~~-~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~ 180 (276)
++|++|++|+..++..+.++|+.+++. +|+.......+...+..+.||. ++||+++ .+..++...|..+++++
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~-~~~~v~~~~g~~~~l~g 149 (279)
T PRK12869 76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTW-LNIVIGGFAGNAAALAG 149 (279)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCCh-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988877 7765433333344456788987 8999997 57788888887777887
Q ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815 181 FIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 255 (276)
Q Consensus 181 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~ 255 (276)
|++ ..| ..+...++.....++|+.+....++++|+|+|+++|+||+|+++|+|++.+....+..+..+
T Consensus 150 ~~a----~~g---~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~ 217 (279)
T PRK12869 150 YAS----GTG---SLDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIP 217 (279)
T ss_pred HHH----HhC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHH
Confidence 764 223 23333344334555677676666788999999999999999999999999887777665444
No 22
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.5e-31 Score=239.90 Aligned_cols=214 Identities=12% Similarity=0.086 Sum_probs=163.5
Q ss_pred HHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC--CCCcc
Q 023815 24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK--PDLPL 101 (276)
Q Consensus 24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~--~~Rpl 101 (276)
++|+|+|++||++...++...+.|+++|.++.. ++..+. ...++.+++++++|++||+.|+|.|++|+ ++||+
T Consensus 2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~--~~~~l~---l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL 76 (286)
T PRK12895 2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYI--HPIKIL---LILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL 76 (286)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCC--CHHHHH---HHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence 478999999999988888888889988854322 222111 12356778899999999999999999995 59999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHHH
Q 023815 102 ASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFF 181 (276)
Q Consensus 102 ~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~ 181 (276)
|+|++|++||+.+.+.+.++++.+++.+|+.++.++. ....+...|+ .+||+++++++++|...|. .++.+|
T Consensus 77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~-~~~~l~~~yp------~~KR~t~~~~~~lG~~~g~-~~l~g~ 148 (286)
T PRK12895 77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSP-IVIFLFIIDP------FLKRYTAWRHIYMGSIIGL-GVLAGY 148 (286)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHH------HHHhCccccHHHHHHHHHh-HHHHHH
Confidence 9999999999999999999999988888987765443 3333444454 4999999999999999984 555666
Q ss_pred HHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815 182 IHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 255 (276)
Q Consensus 182 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~ 255 (276)
.+ +.|. ..+....++.....++|+.+.+++++++|+|+|++.|+||+|+++|++++.+++..++.++.+
T Consensus 149 ~A----v~g~-~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~ 217 (286)
T PRK12895 149 LA----VIPA-FPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLI 217 (286)
T ss_pred HH----HcCC-CCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHH
Confidence 54 2232 112222233334566788999999999999999999999999999999999887666555444
No 23
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.98 E-value=5.6e-31 Score=238.21 Aligned_cols=222 Identities=14% Similarity=0.068 Sum_probs=173.8
Q ss_pred hhhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchh--hhhhcCC
Q 023815 20 GFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVK--IDKINKP 97 (276)
Q Consensus 20 ~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~--~D~~~~~ 97 (276)
...++++.|++.+||+++..++++++.|.++|.....++++...+ .++++.++.|.++|.+|||+|++ .|+. ++
T Consensus 7 ~~~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~~l---l~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~ 82 (304)
T PRK07419 7 MSPSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQFI---TFLLAAILILAWENLSNDVFDADTGIDKN-KF 82 (304)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHHHH---HHHHHHHHHHHHHHHHHHHHHHhccCCcc-cc
Confidence 345678999999999999999999999999986543466665432 23578889999999999999997 6774 22
Q ss_pred CCccccCCCCHHHHHHHHHHHHHHHHHHHH----HhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHh
Q 023815 98 DLPLASGDFSIKTGVAITLTCAMMSLAMGI----MIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYG 173 (276)
Q Consensus 98 ~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~----~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g 173 (276)
+...++..+++++...+..+.+++++++. ..|+ ..+...+++++.+++||. ||+++|+++ +||+.++..+|
T Consensus 83 -~~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~-~~l~ig~~g~~~~~~YT~--gP~~l~y~g-LGE~~v~l~~G 157 (304)
T PRK07419 83 -HSVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDW-TVLGLVLLCCFLGYLYQG--PPFRLGYQG-LGEPLCFLAFG 157 (304)
T ss_pred -cCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcH-HHHHHHHHHHHHhheccC--CCcccCCCC-chHHHHHHHHH
Confidence 23344555789998888887777665543 3344 444445678889999999 999999999 59999999999
Q ss_pred hhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHh
Q 023815 174 VGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNM 253 (276)
Q Consensus 174 ~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~ 253 (276)
.++..+.++. ++ + .+++..+.......+.+.++.+.||+||+|+|+++|+||+|+++|+|++++++..+...+
T Consensus 158 ~l~v~g~~yv-~t---~---~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~a 230 (304)
T PRK07419 158 PLAVAAALYS-QT---P---SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLI 230 (304)
T ss_pred HHHHHHHHHH-hc---C---CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHH
Confidence 8888887764 22 2 344444555556667778889999999999999999999999999999999999998888
Q ss_pred hhhh
Q 023815 254 DLED 257 (276)
Q Consensus 254 ~~~~ 257 (276)
|+..
T Consensus 231 y~~~ 234 (304)
T PRK07419 231 YALE 234 (304)
T ss_pred HHHH
Confidence 8743
No 24
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.98 E-value=9.4e-31 Score=238.26 Aligned_cols=218 Identities=18% Similarity=0.157 Sum_probs=165.5
Q ss_pred hhhHHHHHHHHhh---ccchhHHHHHHHHHhhhhccccC---CCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhh
Q 023815 20 GFLKNLKSLYRFT---RPNTLNGLVIAVTSICCLPLQNL---GDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDK 93 (276)
Q Consensus 20 ~~~~~l~~~~~l~---Rp~~~~~~~~~~~~g~~la~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~ 93 (276)
..++++++|+|++ ||+......++.+.|+++|.... ...++.. .+.+.++.++.++++|++|||+|+|.|+
T Consensus 25 ~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~~---~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~ 101 (314)
T PRK12878 25 RLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLWH---LFLFFVGAIAMRGAGCTYNDIVDRDIDA 101 (314)
T ss_pred hcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3567899999999 89898999999999999985421 1333322 1223578888999999999999999998
Q ss_pred hcC--CCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHH
Q 023815 94 INK--PDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIG 171 (276)
Q Consensus 94 ~~~--~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~ 171 (276)
+++ ++||+++|++|++|+..+..++.++|+.+.+..|++.+.++ +.+++..+.|+. +||+..+++...|..
T Consensus 102 ~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~Gl~ 174 (314)
T PRK12878 102 KVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALG-IASLAIVAAYPF------MKRITWWPQFFLGLA 174 (314)
T ss_pred CCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------HHhcCCcchHHHHHH
Confidence 766 48999999999999999999999999988877776665544 456667889976 899888888777776
Q ss_pred HhhhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHH
Q 023815 172 YGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFK 251 (276)
Q Consensus 172 ~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~ 251 (276)
.+. .++.+|++ ..|. +++..++.....++|+...+.+++++|+|+|+++|+||+|+++|+++++++.....+
T Consensus 175 ~~~-~~l~g~~a----~~g~---~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~ 246 (314)
T PRK12878 175 FSW-GALMGWAA----HFGS---LSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGL 246 (314)
T ss_pred HHH-HHHHHHHH----HhCC---CchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHH
Confidence 553 33344543 2232 333333333345567888899999999999999999999999999999988866555
Q ss_pred Hhhh
Q 023815 252 NMDL 255 (276)
Q Consensus 252 ~~~~ 255 (276)
...+
T Consensus 247 ~~~~ 250 (314)
T PRK12878 247 AVLL 250 (314)
T ss_pred HHHH
Confidence 4433
No 25
>PLN02922 prenyltransferase
Probab=99.98 E-value=1.4e-30 Score=236.76 Aligned_cols=227 Identities=15% Similarity=0.159 Sum_probs=170.3
Q ss_pred hhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchh--hhhhcCCC
Q 023815 21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVK--IDKINKPD 98 (276)
Q Consensus 21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~--~D~~~~~~ 98 (276)
..+++|.|++.+||+++..++++++.|.++|.....++++...+ .++++.++.|.++|.+|||+|++ .|+.++..
T Consensus 11 ~~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~~l---l~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~ 87 (315)
T PLN02922 11 ELSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARRYG---TLLLSSVLVITWLNLSNDAYDADTGVDKNKKES 87 (315)
T ss_pred CccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHHHH---HHHHHHHHHHHHHHHHhhhhHhccCcCcccCCC
Confidence 34568889999999999999999999999986544466665432 24678889999999999999986 57643322
Q ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHh----chhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhh
Q 023815 99 LPLASGDFSIKTGVAITLTCAMMSLAMGIMI----GSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGV 174 (276)
Q Consensus 99 Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~----~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~ 174 (276)
+.-..| ++++++..++.+.++++...+.+ +.+.+++.++++++.+++||. ||+++||++ +||+.++..+|.
T Consensus 88 ~~~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt~--gP~pl~y~g-LGE~~v~i~fG~ 162 (315)
T PLN02922 88 VVNLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQC--PPFRLSYKG-LGEPLCFAAFGP 162 (315)
T ss_pred CCCccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHhc--CCcccccCc-chHHHHHHHHHH
Confidence 122234 89999888887777666322221 334454555678889999999 999999999 599999999998
Q ss_pred hHHHHHHHHHHHHhhcc-cc---cchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHH
Q 023815 175 GIQFSFFIHIQKYVLGR-SV---VITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLF 250 (276)
Q Consensus 175 ~~~l~~~~~~~~~~~g~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~ 250 (276)
++..+.|+. ++...+. .. .+++..++..+...+++.++.+.||+||+|+|+++|+||+|+++|+|+++++...++
T Consensus 163 l~v~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~ 241 (315)
T PLN02922 163 LATTAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAV 241 (315)
T ss_pred HHHHHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHH
Confidence 777776654 2211111 00 123444555567777888899999999999999999999999999999999999988
Q ss_pred HHhhhh
Q 023815 251 KNMDLE 256 (276)
Q Consensus 251 ~~~~~~ 256 (276)
..+|+.
T Consensus 242 ~~~y~~ 247 (315)
T PLN02922 242 LLLYSL 247 (315)
T ss_pred HHHHHH
Confidence 888763
No 26
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.98 E-value=3.6e-31 Score=238.79 Aligned_cols=212 Identities=16% Similarity=0.165 Sum_probs=161.9
Q ss_pred hhHHHHHHHHhhccchhHHHH---HHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCC
Q 023815 21 FLKNLKSLYRFTRPNTLNGLV---IAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKP 97 (276)
Q Consensus 21 ~~~~l~~~~~l~Rp~~~~~~~---~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~ 97 (276)
.+.++++|+|++||++..... ++.+.|..+|.++.+ ++..+ +.+.++.+++++++|++||++|+|.|++++|
T Consensus 5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~--~~~~~---~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R 79 (290)
T PRK12870 5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLP--PLPLV---GIIILGALATSAAGCVVNDLWDRDIDPQVER 79 (290)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCC--CHHHH---HHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence 346789999999999865554 577778888754422 33222 1234677788999999999999999987543
Q ss_pred --CCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhh
Q 023815 98 --DLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVG 175 (276)
Q Consensus 98 --~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~ 175 (276)
+||+++|++|++|+..++..+.++++.+++.+|+.++.++ ..+.+..++|+. .||++.+++++.|...+.
T Consensus 80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~- 151 (290)
T PRK12870 80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLC-VAAVPVIFLYPL------AKRVFPVPQLVLAIAWGF- 151 (290)
T ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHhhh------hhhccccceeeehHHHHh-
Confidence 8999999999999999999999999999888887666554 345556788876 888888899988888874
Q ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHH
Q 023815 176 IQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN 252 (276)
Q Consensus 176 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~ 252 (276)
.++++|.+ ..| ..++..++.....++|+.+.++.++++|+|+|+++|+||+|+++|++++.+++....+.
T Consensus 152 ~~l~g~~a----~~g---~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~ 221 (290)
T PRK12870 152 AVLISWSA----VTG---HLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALT 221 (290)
T ss_pred HHHHHHHH----HcC---CCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHHHH
Confidence 44555543 223 23333344444566788999999999999999999999999999999998877743333
No 27
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=99.97 E-value=4.5e-31 Score=239.03 Aligned_cols=216 Identities=17% Similarity=0.147 Sum_probs=163.8
Q ss_pred hHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC--CCC
Q 023815 22 LKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK--PDL 99 (276)
Q Consensus 22 ~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~--~~R 99 (276)
+.++|+|+|++||+++..+.++...|+++|.++ ..++..+ +.+.++.++.++++|++|||+|+|.|++|+ |+|
T Consensus 7 ~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~~~---~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~R 81 (296)
T PRK04375 7 RATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLLLL---LLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNR 81 (296)
T ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHHHH---HHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCC
Confidence 356999999999999999999999999998543 2333222 123567788999999999999999999987 699
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHH
Q 023815 100 PLASGDFSIKTGVAITLTCAMMSLAMGIM-IGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQF 178 (276)
Q Consensus 100 pl~~G~is~~~a~~~~~~~~~~g~~l~~~-~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l 178 (276)
|+++|++|++|++.++..+.++|+++++. .+.....+..+..+...+.||. ++||+++ ++..++...|..+++
T Consensus 82 pl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~~-~~~~v~~~~g~~~~l 155 (296)
T PRK04375 82 PLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRTP-QNIVIGGAAGAMPPL 155 (296)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCCc-cchHHHHHHHHhHHH
Confidence 99999999999999999999999988755 4654544332222234678987 8999995 677888777766666
Q ss_pred HHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815 179 SFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 255 (276)
Q Consensus 179 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~ 255 (276)
.+|.+ +.| ..+...++.....++|+.+.+..++++|+|+|+++|+||+|+++|++++++.+....++..+
T Consensus 156 ~g~~a----~~g---~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~ 225 (296)
T PRK04375 156 IGWAA----VTG---SLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVA 225 (296)
T ss_pred HHHHH----hCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHH
Confidence 66653 223 23333344444566777777888889999999999999999999999998877766655443
No 28
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.97 E-value=2.2e-30 Score=232.69 Aligned_cols=209 Identities=16% Similarity=0.105 Sum_probs=165.0
Q ss_pred ccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhh--hhh--cCCCCccccCCCCH
Q 023815 33 RPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKI--DKI--NKPDLPLASGDFSI 108 (276)
Q Consensus 33 Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~--D~~--~~~~Rpl~~G~is~ 108 (276)
||+++..++.+++.|.++|.... .+++.... .+++++++.|.++|.+|||+|++. |+. .+|+|++++|.+++
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~~~l---l~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~ 76 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWLH-AFVWLVAL---LALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP 76 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHcC-CccHHHHH---HHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence 89999999999999999986542 66665322 235778899999999999999853 543 25789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH----Hhch-----hHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHH
Q 023815 109 KTGVAITLTCAMMSLAMGI----MIGS-----PPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFS 179 (276)
Q Consensus 109 ~~a~~~~~~~~~~g~~l~~----~~~~-----~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~ 179 (276)
+++...++.+..++++++. ..++ +.++...+++++.+++||. ||+++|+++ +||+.++..+|.+++++
T Consensus 77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~--gP~~l~y~g-LGE~~v~i~~G~l~v~g 153 (284)
T TIGR00751 77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTV--GSKPYGYAG-LGDISVLVFFGPLAVLG 153 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcC--CCCccccCc-hHHHHHHHHHHHHHHHH
Confidence 9999998888776665543 3343 1333444677788999999 999999999 59999999999888888
Q ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815 180 FFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 255 (276)
Q Consensus 180 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~ 255 (276)
.++. ++ + .+++..++......+++.++++.||+||+|+|+++|+||+|+++|+|+++++...++..+|+
T Consensus 154 ~~yv-q~---~---~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~ 222 (284)
T TIGR00751 154 TQYL-QA---H---RVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGV 222 (284)
T ss_pred HHHH-hc---C---CCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHH
Confidence 7663 22 2 24444444445566677889999999999999999999999999999999999998888875
No 29
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=2e-30 Score=233.16 Aligned_cols=213 Identities=15% Similarity=0.100 Sum_probs=158.7
Q ss_pred HHHHHHhhccchhHHHHHHHHHhhhhccc-cCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC--CCCcc
Q 023815 25 LKSLYRFTRPNTLNGLVIAVTSICCLPLQ-NLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK--PDLPL 101 (276)
Q Consensus 25 l~~~~~l~Rp~~~~~~~~~~~~g~~la~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~--~~Rpl 101 (276)
+|+++|+.||++.+.+....+.|.+.+.. .....++..+ +...++.+++++++|++||++|+|.|++|+ ++||+
T Consensus 2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL 78 (284)
T PRK12888 2 VRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWADL---LLVTVAMVGARTFAMAANRIIDREIDARNPRTAGREL 78 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCC
Confidence 68999999999977655544445544421 0112333322 123567788999999999999999999998 58999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHHH
Q 023815 102 ASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFF 181 (276)
Q Consensus 102 ~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~ 181 (276)
|+|++|++|++.+.+.+.++++.++..+|+.++.+. .++++..+.|+. .||++.+++++.|...+. .++++|
T Consensus 79 ~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~t~~~~~~lg~~~~~-~~l~g~ 150 (284)
T PRK12888 79 VTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALA-PLAVAPLVVYPY------AKRFTNFPHAILGLAQAV-GPVGAW 150 (284)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------hhcccchhhHHHHHHHHH-HHHHHH
Confidence 999999999999998888888888877887665543 344455678875 899998999998888764 445556
Q ss_pred HHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815 182 IHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 255 (276)
Q Consensus 182 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~ 255 (276)
.+ +.|. .++..++.....++|+.+.+++|+++|+|+|+++|+||+|+++|+|++.+++..+..++++
T Consensus 151 ~a----~~g~---~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ 217 (284)
T PRK12888 151 IA----VTGT---WSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFA 217 (284)
T ss_pred HH----HcCC---CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHH
Confidence 54 2232 3333344444566788899999999999999999999999999999999877766655544
No 30
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.97 E-value=3.9e-30 Score=232.28 Aligned_cols=213 Identities=22% Similarity=0.313 Sum_probs=164.0
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCC--CCc
Q 023815 23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKP--DLP 100 (276)
Q Consensus 23 ~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~--~Rp 100 (276)
..++.+++..||..+.....+.+.|..++..++++ .. ..+.+.++.+++++++|++||++|+|+||+|+| +||
T Consensus 11 ~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~--~~---~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RP 85 (289)
T COG0382 11 KALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS--LK---LLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRP 85 (289)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch--HH---HHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCC
Confidence 44555566666666666666777777776533322 11 122235677788999999999999999999998 999
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHH
Q 023815 101 LASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSF 180 (276)
Q Consensus 101 l~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~ 180 (276)
+++|++|+++++.+.+++.++++.+++.+++..+.+. ..+.++.+.| . ++||.++++++++|..++..+..|+
T Consensus 86 l~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~-~~~~~l~~~Y-~-----~~Kr~~~~~~~~lg~~~~~~~~~g~ 158 (289)
T COG0382 86 LPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLS-LAALVLALAY-P-----FLKRFTFLPQLVLGLAFGLGALAGA 158 (289)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHH-H-----HhhcCCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998775543 5667788999 4 6999999999999999985554443
Q ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815 181 FIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 255 (276)
Q Consensus 181 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~ 255 (276)
.. ..+ ..+...++......+|+.++++.++++|+|+|+++|++|+|+.+|++++.+++......+.+
T Consensus 159 ~a-----~~~---~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~~~~~~ 225 (289)
T COG0382 159 AA-----VGG---SLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASAL 225 (289)
T ss_pred HH-----HhC---ccchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHHHHHHH
Confidence 22 222 12233344445666788999999999999999999999999999999999999998855444
No 31
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=99.97 E-value=3e-30 Score=232.19 Aligned_cols=213 Identities=20% Similarity=0.220 Sum_probs=158.6
Q ss_pred HHHHHHHHhhccchhHH---HHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC--C
Q 023815 23 KNLKSLYRFTRPNTLNG---LVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK--P 97 (276)
Q Consensus 23 ~~l~~~~~l~Rp~~~~~---~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~--~ 97 (276)
+++|+|+|++|+++... ..++.+.|..+|.++.++ +..+ +.++++.++.++++|++|||+|+|.|++++ +
T Consensus 3 ~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~--~~~~---~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~ 77 (282)
T PRK12848 3 NRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPD--LWVL---VVFVLGVFLMRAAGCVINDYADRDFDGHVKRTK 77 (282)
T ss_pred hhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCC--HHHH---HHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCC
Confidence 56899999999776543 445666788887543322 2221 123467778899999999999999999765 4
Q ss_pred CCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHH
Q 023815 98 DLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQ 177 (276)
Q Consensus 98 ~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~ 177 (276)
+||+++|++|++++..++..+..+++.+++.+++....++ ..+.+..+.|+. .||++.+++++.|...|..+
T Consensus 78 ~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~- 149 (282)
T PRK12848 78 NRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLS-VAALALAWIYPF------MKRYTHLPQVVLGAAFGWGI- 149 (282)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHh------HHhcCcccHHHHHHHHHHHH-
Confidence 8999999999999999999999999988888887666544 455566788965 78888889988888887543
Q ss_pred HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815 178 FSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 255 (276)
Q Consensus 178 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~ 255 (276)
+.+|.+ ..+ ..+...++.....++|+.+.++.++++|+|+|+++|+||+|+++|+|++.+......+....
T Consensus 150 ~~g~~a----~~~---~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~ 220 (282)
T PRK12848 150 PMAFAA----VQG---SVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLAL 220 (282)
T ss_pred HHHHHH----HhC---CCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHHHHHH
Confidence 334443 223 23333344434566778888999999999999999999999999999998887655544444
No 32
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.97 E-value=2.1e-30 Score=233.00 Aligned_cols=212 Identities=20% Similarity=0.204 Sum_probs=157.6
Q ss_pred HHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC--CCCcccc
Q 023815 26 KSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK--PDLPLAS 103 (276)
Q Consensus 26 ~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~--~~Rpl~~ 103 (276)
|+|+|++||+++..+.++...|+++|.+.. +.++..+ +.+.++.++.++++|++|||+|+|.|++|+ |+||+++
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~~~---~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s 76 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPPLL---LLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT 76 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHHHH---HHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence 478999999999999999999999985432 2333322 123567788999999999999999999976 6999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHH-HHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHHH
Q 023815 104 GDFSIKTGVAITLTCAMMSLAMG-IMIGSPPLAWGLILWFI-LVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFF 181 (276)
Q Consensus 104 G~is~~~a~~~~~~~~~~g~~l~-~~~~~~~~~~~~~~~~~-~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~ 181 (276)
|++|++++..+++.+.++|+.+. ...|+....++ ..+.+ ..++||. ++||++++ +..++...|..+++++|
T Consensus 77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~-~~~~~~~~~~Yt~-----~lKr~~~~-~~~v~~~~g~~~~l~g~ 149 (280)
T TIGR01473 77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLG-LFGIFFYVIVYTI-----WLKRRTPQ-NTVIGGFAGAVPPLIGW 149 (280)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhhcCh-----hhccCCch-hHHHHHHHHHHHHHHHH
Confidence 99999999999999999998854 44776555443 34443 3788996 68999975 55667777777777777
Q ss_pred HHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815 182 IHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 255 (276)
Q Consensus 182 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~ 255 (276)
++ ..| ..+...++.....++|+.......+.+|+|+|+++|+||+|+++|+|++.+......+....
T Consensus 150 ~a----~~g---~~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~ 216 (280)
T TIGR01473 150 AA----VTG---SISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLP 216 (280)
T ss_pred HH----hcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHH
Confidence 64 223 22333333333455566555555668999999999999999999999998877766555444
No 33
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.97 E-value=6e-30 Score=232.09 Aligned_cols=217 Identities=16% Similarity=0.215 Sum_probs=160.5
Q ss_pred hhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC--CC
Q 023815 21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK--PD 98 (276)
Q Consensus 21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~--~~ 98 (276)
.+.++|+|++++||+++..+.++.+.|+++|..+ +.++... +.+.++..+.++++|++|||+|+|.|++++ ++
T Consensus 9 ~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~~~---~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~ 83 (306)
T PRK13362 9 WEASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPVLM---LAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRN 83 (306)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHHHH---HHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCC
Confidence 4466899999999999999999999999888433 3333321 123456778888999999999999999765 48
Q ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHH
Q 023815 99 LPLASGDFSIKTGVAITLTCAMMSLAMGI-MIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQ 177 (276)
Q Consensus 99 Rpl~~G~is~~~a~~~~~~~~~~g~~l~~-~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~ 177 (276)
||+++|++++++|+.+++.+..+|+.++. ..|.....+..+..+...+.||. ++||++++++++.+ ..|.+++
T Consensus 84 RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg-~~ga~p~ 157 (306)
T PRK13362 84 RVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGS-LSGAMPP 157 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHH-HHHHHHH
Confidence 99999999999999999999999988654 45655443332222335678986 79999987776544 4455566
Q ss_pred HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815 178 FSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 255 (276)
Q Consensus 178 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~ 255 (276)
+.+|.+ +.| ..+...++.....++|+.+.....+++|+|+|+++|+||+|+++|+|++.+.......+...
T Consensus 158 l~G~~a----~~g---~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~~~~~~~ 228 (306)
T PRK13362 158 VVGYCA----VTG---QFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYILVFAL 228 (306)
T ss_pred HHHHHH----HcC---CCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHHHHHHHHH
Confidence 666654 223 23333444445666788888888889999999999999999999999999866665554333
No 34
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.97 E-value=1.7e-29 Score=227.06 Aligned_cols=213 Identities=13% Similarity=0.035 Sum_probs=164.6
Q ss_pred HHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhh--hhhcCCCCccccCC
Q 023815 28 LYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKI--DKINKPDLPLASGD 105 (276)
Q Consensus 28 ~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~--D~~~~~~Rpl~~G~ 105 (276)
|++.+||+++..++++++.|.++|.....++++.... .++++.++.|.++|.+|||+|++. |+.+. ....++.
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~~l---l~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~--~~~~~~~ 76 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDRFA---LFLIAAILILAWINLTNDVFDSDTGIDRFKL--HSIVNLT 76 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHHHH---HHHHHHHHHHHHHHHHHhHHHHhcCCCcccc--CCccccc
Confidence 6789999999999999999999986544466665432 235788899999999999999874 76422 1222233
Q ss_pred CCHHHHHHHHHHHHHHHHHHH----HHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHHH
Q 023815 106 FSIKTGVAITLTCAMMSLAMG----IMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFF 181 (276)
Q Consensus 106 is~~~a~~~~~~~~~~g~~l~----~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~ 181 (276)
.+++++...+..+..++++++ +..+ +..+....++++.+++||. ||+++|+++ +||+.++..+|.+++.+.+
T Consensus 77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~-~~~l~lg~~g~~~~~~Yt~--gP~~l~y~g-LGE~~v~l~~G~l~v~g~~ 152 (285)
T TIGR02235 77 GSRSLVFWLANFFLLIGLVGIAALSWRWQ-ITVLALVGLCCFLGYLYQG--PPFRLGYQG-LGEPICWLCFGPLAIAAAL 152 (285)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhcC--CCcccCCCC-ccHHHHHHHHHHHHHHHHH
Confidence 457888877777776665544 3334 4444445678889999999 999999999 5999999999988877776
Q ss_pred HHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhhh
Q 023815 182 IHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLE 256 (276)
Q Consensus 182 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~~ 256 (276)
+. ++ + .+++..+......++.+.++.+.||+||+|+|+++|+||+++++|+|++.++...++..+|+.
T Consensus 153 yv-qt---~---~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~ 220 (285)
T TIGR02235 153 YA-QS---Q---SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVV 220 (285)
T ss_pred HH-hC---C---cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHH
Confidence 63 22 2 345555555566777788899999999999999999999999999999999999998888874
No 35
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.97 E-value=1.2e-29 Score=225.44 Aligned_cols=220 Identities=16% Similarity=0.139 Sum_probs=172.2
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchh--hhhh----cC
Q 023815 23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVK--IDKI----NK 96 (276)
Q Consensus 23 ~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~--~D~~----~~ 96 (276)
++.+.|+++.||+++..++++++.|.++|......++++.. +.+++++++.+..+|..|||.|++ .|.. .+
T Consensus 6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~~~~---ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~ 82 (303)
T COG1575 6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNLLVA---LLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLK 82 (303)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHHHHH---HHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccc
Confidence 34689999999999999999999999999765445555432 234678889999999999999985 4542 22
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHHHHH----HHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHH
Q 023815 97 PDLPLASGDFSIKTGVAITLTCAMMSLAMG----IMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGY 172 (276)
Q Consensus 97 ~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~----~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~ 172 (276)
.++.+...+++++..+...+.+...+.+++ ...++ .++..++++++.+++||. +|++++|.| +||+.++.++
T Consensus 83 ~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~-~~l~lG~l~~~~g~~YTg--Gp~PlgY~g-LGEi~~~vff 158 (303)
T COG1575 83 QSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDW-LVLLLGLLCIAAGILYTG--GPFPLGYMG-LGEIFVGVFF 158 (303)
T ss_pred ccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHheeeecc--CCcCcccCC-HHHHHHHHHH
Confidence 345566677788888777776665555444 33344 445556788889999999 999999999 5999999999
Q ss_pred hhhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHH
Q 023815 173 GVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN 252 (276)
Q Consensus 173 g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~ 252 (276)
|.+...+.|+. |+ + .+++..++..+...+.+.+++..||+||+|+|+++|++|+||++|+++++++...++..
T Consensus 159 G~l~v~g~~yi-qt---~---~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~ 231 (303)
T COG1575 159 GPLIVLGAYYI-QT---G---RLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVV 231 (303)
T ss_pred HHHHHHHHHHH-hc---c---cchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHH
Confidence 98777777663 22 2 34555566666777777888999999999999999999999999999999999999988
Q ss_pred hhhh
Q 023815 253 MDLE 256 (276)
Q Consensus 253 ~~~~ 256 (276)
+|+.
T Consensus 232 a~l~ 235 (303)
T COG1575 232 AYLA 235 (303)
T ss_pred HHHH
Confidence 8874
No 36
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.97 E-value=2e-29 Score=226.65 Aligned_cols=210 Identities=17% Similarity=0.160 Sum_probs=152.2
Q ss_pred HHHHHhhccch---hHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC--CCCc
Q 023815 26 KSLYRFTRPNT---LNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK--PDLP 100 (276)
Q Consensus 26 ~~~~~l~Rp~~---~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~--~~Rp 100 (276)
+.|.|++|++. +....++.+.|+.+|.......++..+ +.+.++.++.++++|++|||+|+|.|++|+ |+||
T Consensus 2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~~---~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RP 78 (281)
T TIGR01474 2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYLL---GLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRP 78 (281)
T ss_pred hHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHHHH---HHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCC
Confidence 44566655554 455566777788887431111122221 123466778899999999999999999765 4899
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHH
Q 023815 101 LASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSF 180 (276)
Q Consensus 101 l~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~ 180 (276)
+++|+++++|++.++.++.++|+.+++..|+....++ +.+++..+.||. +||++.+++++.|...+..+ +.+
T Consensus 79 l~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~-~~g 150 (281)
T TIGR01474 79 LASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLG-VASLALVATYPF------MKRITYWPQLVLGLAFGWGA-LMG 150 (281)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhch------hcccccccHHHHHHHHHHHH-HHH
Confidence 9999999999999999999999999888887666544 456667899986 89998899988887776433 334
Q ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHh
Q 023815 181 FIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNM 253 (276)
Q Consensus 181 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~ 253 (276)
|.+ +.| +.++..++.....++|+.+.+..++++|+|+|+++|+||+|+++|+|++++......+..
T Consensus 151 ~~a----~~g---~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~ 216 (281)
T TIGR01474 151 WAA----VTG---DLSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMI 216 (281)
T ss_pred HHH----HcC---CCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHH
Confidence 443 233 233333333345566788999999999999999999999999999998766655544433
No 37
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=5.3e-29 Score=222.84 Aligned_cols=216 Identities=20% Similarity=0.227 Sum_probs=149.4
Q ss_pred HHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCCCCccccC
Q 023815 25 LKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASG 104 (276)
Q Consensus 25 l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G 104 (276)
+|.+++++||++|+.+.+++..|+++| ++.++ +.+++.. +......+.+.|++|||+|+|.|+.|++++. +.|
T Consensus 1 ~~~~~~~~rP~~wi~~a~pf~~g~~la-~~~~~--~~~l~~~---l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g-~~g 73 (282)
T PRK13105 1 IRQLLLSSRPISWINTAYPFAAAYLLA-GGEID--WLFVVGT---VFFLIPYNLAMYGINDVFDYESDLRNPRKGG-VEG 73 (282)
T ss_pred ChhHHHhcccHHHhccHHHHHHHHHHH-CCCCC--hHHHHHH---HHHHHHHHHHHHhhhhhhhhhcCCCCcccCC-CCC
Confidence 478899999999999999999999998 44332 3222221 1112223333346699999999999876433 358
Q ss_pred CCCHHHHHHHHHHHHHHHHH----HHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHH
Q 023815 105 DFSIKTGVAITLTCAMMSLA----MGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSF 180 (276)
Q Consensus 105 ~is~~~a~~~~~~~~~~g~~----l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~ 180 (276)
.++++|.....+.+..++.. .....+.+..+....++++.++.||. ||.|+|++++.++++.++.+.....+|.
T Consensus 74 ~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~~ai~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~~v~G~ 151 (282)
T PRK13105 74 AVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLAVSVFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSPALYGL 151 (282)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC--CCccccccchHHHHHHHHHHHHHHHHHH
Confidence 89999885554443333222 12233233333344577788999999 9999999998777655544432233343
Q ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhhhh
Q 023815 181 FIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLED 257 (276)
Q Consensus 181 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~~~ 257 (276)
++ + +. ..++..++....+++++.+++++||+||+|+||++|+||+|+++|+|++.+++..++.++++..
T Consensus 152 ~~-----~-~~--~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~ 220 (282)
T PRK13105 152 VL-----A-GA--PFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLM 220 (282)
T ss_pred HH-----h-hc--cccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHH
Confidence 32 2 32 2333345555566778899999999999999999999999999999999999999999888754
No 38
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.96 E-value=2e-28 Score=220.54 Aligned_cols=208 Identities=17% Similarity=0.162 Sum_probs=152.5
Q ss_pred hHHHHHHHHhhccchhHHHH---HHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC--
Q 023815 22 LKNLKSLYRFTRPNTLNGLV---IAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK-- 96 (276)
Q Consensus 22 ~~~l~~~~~l~Rp~~~~~~~---~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~-- 96 (276)
++++++|+|++|.++..... ++...|..++.......++..+ +.+.++.+++++++|++||++|+|+|++|+
T Consensus 3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~~l---~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT 79 (289)
T PLN02809 3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKML---ALFGCGALLLRGAGCTINDLLDRDIDKKVERT 79 (289)
T ss_pred chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHHHH---HHHHHHHHHHHHHHHHHHhhHHhccccCCCCC
Confidence 36789999999998755443 4555566555321111222221 123567788999999999999999999875
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhH
Q 023815 97 PDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGI 176 (276)
Q Consensus 97 ~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~ 176 (276)
|+||+++|++|++|++.+..++.++++.+++.+|+..+.++ .++.+..+.|+. +||++.+++++.|...+. .
T Consensus 80 ~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~-~ 151 (289)
T PLN02809 80 KLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILG-ASSLLLVFTYPL------MKRFTFWPQAFLGLTFNW-G 151 (289)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhH------HHhcCcchHHHHHHHHHH-H
Confidence 59999999999999999999999999999888887666554 455566788976 999999999888877664 3
Q ss_pred HHHHHHHHHHHhhcccccchhHHHH-HHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHH
Q 023815 177 QFSFFIHIQKYVLGRSVVITRSLIF-TTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELL 247 (276)
Q Consensus 177 ~l~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~ 247 (276)
++.+|.+ +.|. .++..+. .....++|+.+.+++++++|+|+|+++|+||+|+++|+++..+++.
T Consensus 152 ~l~g~~a----v~g~---~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~ 216 (289)
T PLN02809 152 ALLGWAA----VKGS---LDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG 216 (289)
T ss_pred HHHHHHH----HhCC---CChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH
Confidence 3444543 3342 2222222 2334556788889999999999999999999999999997666664
No 39
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=2.9e-28 Score=218.97 Aligned_cols=216 Identities=15% Similarity=0.146 Sum_probs=154.6
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHhhhhcc------ccC-CCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhc
Q 023815 23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPL------QNL-GDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKIN 95 (276)
Q Consensus 23 ~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~------~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~ 95 (276)
+++|.|.++.|-.+.+-++=-...|.++|. ++. ...++..+ +...++.+.+++++|++||+.|+|.|++|
T Consensus 2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~ 78 (300)
T PRK12876 2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGGIKTI---SLGGSAFFCARTVGIIVNQIIDCAIDKKN 78 (300)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCCHHHH---HHHHHHHHHHHHHHHHHHhHHHhcccCCC
Confidence 458999999999874433221234677764 220 01122221 12356778899999999999999999999
Q ss_pred CC--CCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHh
Q 023815 96 KP--DLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYG 173 (276)
Q Consensus 96 ~~--~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g 173 (276)
+| +||+|+|++|++||+.+.+.+.+++++++..+|+.+..++. ++++..+.|+. +||++++++++.|...+
T Consensus 79 ~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~-~~~~~~~iY~~------~KR~t~~~~~vLGl~~~ 151 (300)
T PRK12876 79 PRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAV-LSTLLMIIYPY------TKRVTFLCHWILGLVYY 151 (300)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HhcCCchhHHHHHHHHH
Confidence 84 99999999999999999987777788888888987766553 55556688986 99999999998888877
Q ss_pred hhHHHHHHHHHHHHhhcccccchhHH----HHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHH
Q 023815 174 VGIQFSFFIHIQKYVLGRSVVITRSL----IFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNL 249 (276)
Q Consensus 174 ~~~~l~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l 249 (276)
. .++++|.+ +.+.+ .++.. ++.....++|..+.+++++.+|+|+|++.|+||+|+++|++++.+++..+
T Consensus 152 ~-~~l~~~~A----v~~~~--~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~ 224 (300)
T PRK12876 152 L-AILMNFFA----IIETP--LSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASAN 224 (300)
T ss_pred H-HHHHHHHH----HhcCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHH
Confidence 5 44555543 23321 22211 11122334566689999999999999999999999999999987776655
Q ss_pred HHHhhh
Q 023815 250 FKNMDL 255 (276)
Q Consensus 250 ~~~~~~ 255 (276)
+.++.+
T Consensus 225 ~~l~~~ 230 (300)
T PRK12876 225 LIASAI 230 (300)
T ss_pred HHHHHH
Confidence 554333
No 40
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=3.2e-28 Score=218.67 Aligned_cols=213 Identities=16% Similarity=0.149 Sum_probs=152.7
Q ss_pred hhHHHHHHHHhhccchhHHHH---HHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCC
Q 023815 21 FLKNLKSLYRFTRPNTLNGLV---IAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKP 97 (276)
Q Consensus 21 ~~~~l~~~~~l~Rp~~~~~~~---~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~ 97 (276)
.++++++|+|++||+++..+. ++.+.|.+++..+.+ +...+ +.+.++..++++++|++||+.|+|+|++|+|
T Consensus 3 ~~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~--~~~~~---~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~R 77 (294)
T PRK12873 3 RSIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPP--SLLLL---LLIILGGLAVSGAGCIANDLWDRRIDRKVER 77 (294)
T ss_pred chHhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCC--CHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 456799999998888766554 455667777643322 22221 1235677788999999999999999998864
Q ss_pred --CCccccCCCCHHHHHHHHHHHHHHHHHHHHHh----chhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHH
Q 023815 98 --DLPLASGDFSIKTGVAITLTCAMMSLAMGIMI----GSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIG 171 (276)
Q Consensus 98 --~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~----~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~ 171 (276)
+||+++|++++++|+.+..++.++++.+++.+ |+.+..++ .++++....|+. +||++.+.+++.|..
T Consensus 78 T~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~vlg~~ 150 (294)
T PRK12873 78 TKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLA-FLALPPILIYPS------AKRWFAYPQAILALC 150 (294)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHH------HHhccccchHHHHHH
Confidence 99999999999999999999999998887665 34444443 344456788986 899998898888776
Q ss_pred HhhhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHH
Q 023815 172 YGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFK 251 (276)
Q Consensus 172 ~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~ 251 (276)
.+ .+++.+|.+ +.|. .++....++.....++|+.+.+++++++|+|+|+++|++|+|+++|++.. +....++.
T Consensus 151 ~a-~~~l~gw~A----v~g~-~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~-~~~~~~~~ 223 (294)
T PRK12873 151 WG-FAVLIPWAA----AEGS-LNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNAL-KTVQICYF 223 (294)
T ss_pred HH-hHHHHHHHH----HhCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhH-HHHHHHHH
Confidence 66 455666654 3342 12211223322455678889999999999999999999999999997544 44444433
Q ss_pred H
Q 023815 252 N 252 (276)
Q Consensus 252 ~ 252 (276)
+
T Consensus 224 ~ 224 (294)
T PRK12873 224 L 224 (294)
T ss_pred H
Confidence 3
No 41
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=3.1e-27 Score=211.84 Aligned_cols=216 Identities=18% Similarity=0.225 Sum_probs=137.7
Q ss_pred hhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCC-CChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCCCC
Q 023815 21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGD-LTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDL 99 (276)
Q Consensus 21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~R 99 (276)
...++|.+++++||++|..+..+++.|.++|.....+ +++. ++.++. ...+..+.+.+.+|||+|+|+||.|++++
T Consensus 4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~-~~~ll~--~~~i~~Nl~~y~iND~~D~D~Dr~~prk~ 80 (282)
T PRK12875 4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPA-AVALFA--YFLFPANVFLYGVNDVFDADTDELNPKKD 80 (282)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHH-HHHHHH--HHHHHHHHHHhcchhhhhhhccccCCCcc
Confidence 4567889999999999999999999999998654322 2332 111111 11122334455689999999999998765
Q ss_pred ccccCCCC--HHHHHHHH-HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhH
Q 023815 100 PLASGDFS--IKTGVAIT-LTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGI 176 (276)
Q Consensus 100 pl~~G~is--~~~a~~~~-~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~ 176 (276)
. ++.+. .+.+.... .....+++.+....+.... ...+..+++++.||. ||+|+|++++.+..+.|... ++
T Consensus 81 ~--~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~-~~ll~~i~~~~~YS~--pP~rlk~~p~~~~~~~g~~~--~~ 153 (282)
T PRK12875 81 R--EREVRYRGDRRVLVAVALSGALALAFLLVLPPAAW-PALLAFLVLSVEYSA--PPLRFKTTPVLDSLSNGLYI--LP 153 (282)
T ss_pred C--CCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHcC--CCccchhccHHHHHHHHHHH--HH
Confidence 4 11122 12222111 1122333333333333222 223445678899999 99999999976543333321 23
Q ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815 177 QFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 255 (276)
Q Consensus 177 ~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~ 255 (276)
.++.|+. ..| ..++..++. ..++++.+.+++||+||+|+|+++|+||+|+++|+|++++++..++.++.+
T Consensus 154 ~~~~y~~----~tg---~~~~~~l~~--a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~ 223 (282)
T PRK12875 154 GVAAYAL----VSG---SLPPLLAVA--GGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAA 223 (282)
T ss_pred HHHHHHH----HcC---CCcHHHHHH--HHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHH
Confidence 3444442 123 234433333 235678889999999999999999999999999999999888888766554
No 42
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=9e-27 Score=210.51 Aligned_cols=213 Identities=17% Similarity=0.225 Sum_probs=141.4
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhc-------
Q 023815 23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKIN------- 95 (276)
Q Consensus 23 ~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~------- 95 (276)
+++|+|++++||+++.....+++.|.++|.......++..+. +.++.+.+.. .++|++|||+|+|.|++|
T Consensus 3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~~~--l~~l~~~l~~-~ag~~iND~~D~~~D~~~v~rtm~r 79 (297)
T PRK12871 3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWELTI--KAALIGLFGF-EAGFVLNDYVDRKRDRLDVENTLTR 79 (297)
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHHHH--HHHHHHHHHH-HHHHHHhhHHHHhcCcchHhhhhhc
Confidence 468999999999988777777777887773211233443221 1123343444 556899999999999864
Q ss_pred --C--CCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhH---HHHHHHHHHHHHHHhcCCCCccccccc---hhhhH
Q 023815 96 --K--PDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPP---LAWGLILWFILVTAYSIDLPFLRWKRN---AFLAA 165 (276)
Q Consensus 96 --~--~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~---~~~~~~~~~~~~~~Ys~~~pP~~lK~~---~~~~~ 165 (276)
| ++||+++|++++++++.+.+.+.++|+.++..++... .+...+.+.++++.|+. .||. | .+.
T Consensus 80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~------~kr~~~~p-~~~ 152 (297)
T PRK12871 80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQV------KKRNQKYP-VAQ 152 (297)
T ss_pred cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cccccccc-HHH
Confidence 2 4899999999999999999999999988876654321 21222344456677775 2332 4 222
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHH
Q 023815 166 ISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKE 245 (276)
Q Consensus 166 ~~v~~~~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l 245 (276)
+.-+...+. +++.++. ..| ..+...+....+.++|+.+.+..||++|+|+|+++|+||+|+++|++++++.
T Consensus 153 l~G~~~~~~-~~~~g~~-----~~g---~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~ 223 (297)
T PRK12871 153 LLGRTDFTL-FPAAGYL-----CYG---QPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYW 223 (297)
T ss_pred HHHHHHHHH-HHHHHHH-----HhC---CCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHH
Confidence 222223332 3444342 223 2333334444566778899999999999999999999999999999999876
Q ss_pred HHHHHHHhh
Q 023815 246 LLNLFKNMD 254 (276)
Q Consensus 246 ~~~l~~~~~ 254 (276)
...+..+..
T Consensus 224 i~~~~~l~~ 232 (297)
T PRK12871 224 VTGFTALHF 232 (297)
T ss_pred HHHHHHHHH
Confidence 665544443
No 43
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=6.4e-27 Score=210.81 Aligned_cols=214 Identities=23% Similarity=0.262 Sum_probs=148.3
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCCCCccc
Q 023815 23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLA 102 (276)
Q Consensus 23 ~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~Rpl~ 102 (276)
+-+++++++.|+.+...+..+...+.... ...+... ... ..++.++.+.++|.+|||+|+|+|+.|+|+||.+
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~--~~~~~~~-~~~----~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~ 74 (285)
T PRK12872 2 KLLFAFLKLFRYGNLLIAALGQSLVYMAS--LLLGLPI-SWL----LLLITFLIAAAVYIINYLTDLEEDIINKPERVVF 74 (285)
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHH--HHHcChh-HHH----HHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence 45789999999998777666554332110 0111111 111 2356677888899999999999999999999988
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHH-----hchhHHHHHHHHHHHHHHHhcCCCCcc-ccccchhhhHHHHHHHHhhhH
Q 023815 103 SGDFSIKTGVAITLTCAMMSLAMGIM-----IGSPPLAWGLILWFILVTAYSIDLPFL-RWKRNAFLAAISIMIGYGVGI 176 (276)
Q Consensus 103 ~G~is~~~a~~~~~~~~~~g~~l~~~-----~~~~~~~~~~~~~~~~~~~Ys~~~pP~-~lK~~~~~~~~~v~~~~g~~~ 176 (276)
++ +++......+..++..++.. .|++.+.+ .+++.+.+++||. ||. ++||.|.++|+++|..+|..+
T Consensus 75 s~----~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~ 147 (285)
T PRK12872 75 SE----TKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALI-FIIPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSP 147 (285)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHH
Confidence 54 44444444444443333322 35544443 4566677999999 665 589999999999999999666
Q ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhhh
Q 023815 177 QFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLE 256 (276)
Q Consensus 177 ~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~~ 256 (276)
.++.++. .+. .++...+....+++++..+++..+|++|+|+|+++|++|+|+++|+|+++++...+..++++.
T Consensus 148 ~~~~~~~-----~~~--~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~ 220 (285)
T PRK12872 148 LILGVYY-----YQL--TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLIL 220 (285)
T ss_pred HHHHHHh-----ccc--ccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHH
Confidence 5544432 111 123333433445666677889999999999999999999999999999999999998887763
Q ss_pred h
Q 023815 257 D 257 (276)
Q Consensus 257 ~ 257 (276)
.
T Consensus 221 ~ 221 (285)
T PRK12872 221 L 221 (285)
T ss_pred H
Confidence 3
No 44
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.9e-27 Score=208.89 Aligned_cols=217 Identities=22% Similarity=0.240 Sum_probs=163.4
Q ss_pred hhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCC--C
Q 023815 21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKP--D 98 (276)
Q Consensus 21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~--~ 98 (276)
...++|+|++++||+....++++.+.|+.+|.++ ..++..+ +.+.++..+..+++|++|+++|+|+|++++| +
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~--~~~~~l~---~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~ 88 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRG--SINPLLL---LLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK 88 (304)
T ss_pred hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccc--cccHHHH---HHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence 5578999999999999999999999999999752 3333322 2235777888899999999999999999875 8
Q ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHH
Q 023815 99 LPLASGDFSIKTGVAITLTCAMMSLAMG-IMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQ 177 (276)
Q Consensus 99 Rpl~~G~is~~~a~~~~~~~~~~g~~l~-~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~ 177 (276)
||+++|+++++|++.++..+.++|+.+. +..|+....++++..++..+.||. ++||++. -|+++|...|+.++
T Consensus 89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~-----~lKR~T~-~NiviGg~aGa~Pp 162 (304)
T COG0109 89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTL-----WLKRRTP-QNIVIGGFAGAMPP 162 (304)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----hccCCcc-cceeeeeccccccc
Confidence 9999999999999999999999999887 667766655554444556889998 8999995 68899999999899
Q ss_pred HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815 178 FSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 255 (276)
Q Consensus 178 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~ 255 (276)
+.+|.+ +.|. .+.....++...|+|...+-..+ .++=.|+.+++|++++|++-|++.+++......++...
T Consensus 163 liGwaA----vtg~-~~~~a~~Lf~IiF~WtPpHfwAL--Al~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~ 233 (304)
T COG0109 163 LIGWAA----VTGS-ISLGAILLFAIIFLWTPPHFWAL--ALKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAP 233 (304)
T ss_pred cceeee----eeCC-CCchHHHHHHHHHHhccHHHHHH--HHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHH
Confidence 888875 4453 22333233333333322221111 22335566899999999999999999887777665444
No 45
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.94 E-value=7.3e-26 Score=201.45 Aligned_cols=178 Identities=12% Similarity=0.118 Sum_probs=129.8
Q ss_pred HHHHHHHHHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHh--
Q 023815 71 VPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAY-- 148 (276)
Q Consensus 71 ~~~~~~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Y-- 148 (276)
+..++...++|++|||+|+|+||+|+|+||+|||++|+++++.++..+.++++.++... . .. ....+..+.|
T Consensus 53 ~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-~----i~-i~~~~i~~lY~~ 126 (299)
T PRK13592 53 FTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-M----NN-VGWFLFLYIYGT 126 (299)
T ss_pred HHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-H----HH-HHHHHHHHHHHH
Confidence 34556677889999999999999999999999999999999999988877777766444 1 11 1222345566
Q ss_pred ---cCCCCccccccchhhhHHHHHHHHhhhHHHH--HHHH-HHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCCh
Q 023815 149 ---SIDLPFLRWKRNAFLAAISIMIGYGVGIQFS--FFIH-IQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDV 222 (276)
Q Consensus 149 ---s~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~--~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 222 (276)
+. ++|+.++.||+.++...|..+..+ .|.+ .+....|.+ ......++.....++.++++|+.+|++|
T Consensus 127 lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~-~~~~~~~~l~l~afl~~l~rEI~KdieD- 199 (299)
T PRK13592 127 LMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP-LLSLPTVLLAFTMYFPSLIWEVCRKIRA- 199 (299)
T ss_pred HHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHHHHHHHHHhhcC-
Confidence 77 899999999999999998544222 1211 011122211 1111012222345556789999999999
Q ss_pred HhhHhcCCcccchhhchHhHHHHHHHHHHHhhhhhcCCCCCC
Q 023815 223 DGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLEDESPLPGE 264 (276)
Q Consensus 223 e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~~ 264 (276)
|||++ |.+|+|+++|.|++.+++.++..++.+ .||+|+.
T Consensus 200 ~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~--~s~lp~~ 238 (299)
T PRK13592 200 PKDET-EYVTYSKLFGYKKATRFIEVVTLLDIL--TNFALLW 238 (299)
T ss_pred Ccccc-CCeeechhccchhHHHHHHHHHHHHHH--HhhHHHH
Confidence 88885 599999999999999999999999888 8888754
No 46
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.94 E-value=1.7e-25 Score=197.59 Aligned_cols=162 Identities=25% Similarity=0.428 Sum_probs=128.0
Q ss_pred HHHHHHHHHHhHhhcccchhhhhh--cCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHh
Q 023815 71 VPAALMAIYMTAINQLVDVKIDKI--NKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAY 148 (276)
Q Consensus 71 ~~~~~~~~~~~~~Nd~~D~~~D~~--~~~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Y 148 (276)
++.++.+.++|.+||+.|+|+|+. |+|+||+++|+++++++...+..+.++++++++..++..+.+. +++.+.+++|
T Consensus 30 l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~~~~~~~~~~~~-~~~~~~~~~Y 108 (257)
T PF01040_consen 30 LAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLALLLGPWFLLIL-LLGFLLGLLY 108 (257)
T ss_pred HHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHHHhcCchhHHHH-HHHHHHHHHH
Confidence 445578888999999999999999 8899999999999999999999999999999887787655543 4555667999
Q ss_pred cCCCCccccccchhhhHHHHHHHHhhhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhc
Q 023815 149 SIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEY 228 (276)
Q Consensus 149 s~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~a 228 (276)
| ||+|+||++++++++++..++..+..+.+. .++ ..+...+....+.+++.......+|++|+|+|+++
T Consensus 109 s---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~ 177 (257)
T PF01040_consen 109 S---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AGG--DPPPPPFLLAIFFFLLIFAIMFFNDIRDIEGDRKA 177 (257)
T ss_pred h---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cCC--cccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHc
Confidence 9 677999999889999999888555444332 222 22323333323334556666777899999999999
Q ss_pred CCcccchhhchHhHHH
Q 023815 229 GIRTFSVMLGKERMIK 244 (276)
Q Consensus 229 G~~Tl~v~lG~~~a~~ 244 (276)
|++|+|+++|++++++
T Consensus 178 g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 178 GRRTLPVLLGEKKARY 193 (257)
T ss_pred CCcchHHHHHHHHHHH
Confidence 9999999999999998
No 47
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.93 E-value=2.7e-24 Score=192.94 Aligned_cols=167 Identities=22% Similarity=0.217 Sum_probs=123.8
Q ss_pred HHHHHHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCC--
Q 023815 74 ALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSID-- 151 (276)
Q Consensus 74 ~~~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~-- 151 (276)
.+...++|++|||+|+|+|++|+|+||.+ +++.+..++.+..++|+.+++..|++. + .+++.+.+++||.+
T Consensus 68 ~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~l--l-~ll~~l~g~lYS~Glk 140 (307)
T PRK13591 68 GLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGMLL--L-AFLPFITGYLYSKGIK 140 (307)
T ss_pred HHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHHH--H-HHHHHHHHHHhcCCCC
Confidence 34566678899999999999999999987 688899999999999999998888532 2 24666789999972
Q ss_pred C--CccccccchhhhHHHHHHHHhhhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcC
Q 023815 152 L--PFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYG 229 (276)
Q Consensus 152 ~--pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG 229 (276)
. .|+|+|+++.+||++++..+|.....+ . +. ..+ .+.+. .....+.....++++++||++|+|+|+++|
T Consensus 141 ~~P~plklK~~~glGnl~V~i~~G~~i~g~--~--g~-~~~---~~~~~-~~i~l~~~~~l~~~~iindirDiEGDr~~G 211 (307)
T PRK13591 141 IGKFALKLKGGLGVKNIVVGITWGGFIAGI--A--GS-YCG---SLIPV-GLIFLFFGVKLFINSCVYDFKDVKGDTLAG 211 (307)
T ss_pred CCCccccccCCCchhHHHHHHHHHHHHHHH--H--Hh-hhh---hHHHH-HHHHHHHHHHHHHHHHHHHhhhhHhHHHcC
Confidence 1 144889998899999999999533211 1 11 111 11111 111112212235677899999999999999
Q ss_pred CcccchhhchHhHHHHHHHHHHHhhhh
Q 023815 230 IRTFSVMLGKERMIKELLNLFKNMDLE 256 (276)
Q Consensus 230 ~~Tl~v~lG~~~a~~l~~~l~~~~~~~ 256 (276)
++|+|+++|+++++++...+++.+++.
T Consensus 212 ~kTLPV~lG~~~A~~l~~~l~~~~~l~ 238 (307)
T PRK13591 212 IKTLPVSLGEQKTRNLLLGIHLFSHLV 238 (307)
T ss_pred CeeEEEEECHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998877763
No 48
>PLN02776 prenyltransferase
Probab=99.93 E-value=2.9e-24 Score=195.94 Aligned_cols=203 Identities=16% Similarity=0.074 Sum_probs=147.3
Q ss_pred hhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC--CCCccccCCCCH
Q 023815 31 FTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK--PDLPLASGDFSI 108 (276)
Q Consensus 31 l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~--~~Rpl~~G~is~ 108 (276)
++||+....++++.+.|+++|.++..+ +..+ +.+.++.+++++++|++||++|+|+|++|+ ++||+|+|++++
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~~~~~--~~~l---~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~ 75 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSGEAID--LPGL---GWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV 75 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCCC--HHHH---HHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence 478999899999999999998543322 2221 123567888999999999999999999976 499999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHHHHHHHHH
Q 023815 109 KTGVAITLTCAMMSLAM-GIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKY 187 (276)
Q Consensus 109 ~~a~~~~~~~~~~g~~l-~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~~~ 187 (276)
++|+.+++.+.++|+.+ ++.+|..+..++....++....||. +||++.+ +.++|...|+++++++|.+
T Consensus 76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~------lKR~t~~-~~~lG~~~Ga~ppL~Gw~A---- 144 (341)
T PLN02776 76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP------LKQIHPA-NTWVGAVVGAIPPLMGWAA---- 144 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------HccCCch-hHHHHHHHHHHHHHHHHHH----
Confidence 99999999999988855 4567876665543222333567886 9999976 5799999998888888875
Q ss_pred hhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhh--chHhHHHHHHHHHHH
Q 023815 188 VLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVML--GKERMIKELLNLFKN 252 (276)
Q Consensus 188 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~l--G~~~a~~l~~~l~~~ 252 (276)
+.| .+++..++.....++|+........+.|+|+|+++|++++|+.- |+++++.+....+.+
T Consensus 145 vtg---~~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l 208 (341)
T PLN02776 145 ASG---QLDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYL 208 (341)
T ss_pred HcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHH
Confidence 333 23333343334455666644555566778899999999999976 456666555444443
No 49
>PRK08238 hypothetical protein; Validated
Probab=99.88 E-value=3e-21 Score=184.72 Aligned_cols=194 Identities=21% Similarity=0.306 Sum_probs=137.9
Q ss_pred hhhhhhhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhc
Q 023815 16 SFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKIN 95 (276)
Q Consensus 16 ~~~~~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~ 95 (276)
+..++.+.++++|++++||++|.++++.++ +++++ +...+.+. +. ..+...++..++++++|++||++|+|.||+|
T Consensus 182 ~~~~~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a-~~~~~~~~-~~-~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~ 257 (479)
T PRK08238 182 RVFPPRPARLRTWLKALRVHQWAKNLLVFV-PLLAA-HQFGDLQA-LL-AALLAFLAFSLCASAVYILNDLLDLEADRAH 257 (479)
T ss_pred eecCCCchHHHHHHHHhCCcHHHHHHHHHH-HHHHh-cccCChHH-HH-HHHHHHHHHHHHHHHHHHHHhhHHhhhhccC
Confidence 344566778999999999999999998754 66665 33222221 11 1122244555778888999999999999998
Q ss_pred --CCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHh
Q 023815 96 --KPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYG 173 (276)
Q Consensus 96 --~~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g 173 (276)
||+||++||++++++|+.++.++.++|+.+++.+|+... ...+..+++.++||. ++||+++++++++++.++
T Consensus 258 ~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~-~~~~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~ 331 (479)
T PRK08238 258 PRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFL-LVLLAYLALTLAYSL-----RLKRKVLVDVLTLAALYT 331 (479)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHhhH-----HhcCCccccchHHHHHHH
Confidence 579999999999999999999999999999988887433 344566677889998 899999999999988876
Q ss_pred hhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCC
Q 023815 174 VGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGI 230 (276)
Q Consensus 174 ~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~ 230 (276)
.-+..| +. ..+ .+++.|+.. +..++.+...+.+...|.++++..|.
T Consensus 332 lr~~~G-~~-----a~~----~~~s~wll~-~~~~~~l~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 332 LRIIAG-AA-----AIG----VALSFWLLA-FSMFFFLSLALVKRYTELRRALQRGK 377 (479)
T ss_pred HHHHHH-HH-----Hhc----cCHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence 433333 22 222 122223321 22223445577788888888887775
No 50
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.88 E-value=3.3e-21 Score=173.69 Aligned_cols=145 Identities=19% Similarity=0.289 Sum_probs=109.1
Q ss_pred hhhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhc--CC
Q 023815 20 GFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKIN--KP 97 (276)
Q Consensus 20 ~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~--~~ 97 (276)
+.++++|+|++++||++|.++.+.+.. .+++.. ..+.+. ....++ ..++..+.+++++++||++|+|+||+| ||
T Consensus 6 ~~~~~l~~~l~L~RP~~w~~nll~~~~-~~~a~~-~~~~~~-~~~~ll-afl~~~l~~sa~y~iND~~D~e~Dr~~prk~ 81 (295)
T PRK12324 6 PPKNLLAGYLKLLRPKQWIKNLFVFAA-PIFAGN-LLNPGA-LLKVLL-AFVLFCLASSAVYLVNDIRDVEADRLHPTKR 81 (295)
T ss_pred ChHHHHHHHHHHhCchHHHHHHHHHHH-HHHHHh-hcccch-HHHHHH-HHHHHHHHHHHHHHHHhHHHHHhhccCCCCC
Confidence 345679999999999999999886553 344422 112111 111111 223344567778899999999999997 67
Q ss_pred CCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhh
Q 023815 98 DLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGV 174 (276)
Q Consensus 98 ~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~ 174 (276)
+||+++|++++++++.++.++..+|+.+++.+++....+ .+..++..+.||. ++||++.+++++++..++.
T Consensus 82 ~RPlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~-~~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~l 152 (295)
T PRK12324 82 NRPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALV-LLVYLVLNLAYSF-----KLKHQPVLDVFCIASGFVL 152 (295)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhH-----HhcCCchhhHHHHHHHHHH
Confidence 999999999999999999999999999988888655543 3456677889998 8999999999998887763
No 51
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=99.80 E-value=4.3e-20 Score=159.99 Aligned_cols=216 Identities=19% Similarity=0.187 Sum_probs=153.1
Q ss_pred hhhhhhhHHHHHHHHhhccchhHHHHH---HHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhh
Q 023815 16 SFQAGFLKNLKSLYRFTRPNTLNGLVI---AVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKID 92 (276)
Q Consensus 16 ~~~~~~~~~l~~~~~l~Rp~~~~~~~~---~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D 92 (276)
+..+..+.++|.|.|++|.+..+++.+ +..-..++|.... ..+..-.++++ -++.+++.+++|.+||..|+|.|
T Consensus 55 s~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag-~~p~~~mL~LF--G~GAllMRgAGCtINDlwDkdlD 131 (353)
T KOG1381|consen 55 SLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAG-LLPSIKMLALF--GVGALLMRGAGCTINDLWDKDLD 131 (353)
T ss_pred hhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCCC-ccchhHHHHHh--cccHHHhccCCceehhhhhhhhh
Confidence 355566678999999999998776653 2222233443211 11111123332 35778899999999999999999
Q ss_pred hhcC--CCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHH
Q 023815 93 KINK--PDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMI 170 (276)
Q Consensus 93 ~~~~--~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~ 170 (276)
++.+ +.||+++|++++++|..+......+|+.+...+|+....++ ..++...+.|+. +||.+++.+++.|.
T Consensus 132 ~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg-~~sl~~v~~ypl------~kr~TY~pq~vLgl 204 (353)
T KOG1381|consen 132 AKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALG-ASSLALVITYPL------MKRFTYWPQLVLGL 204 (353)
T ss_pred hhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhc-ccccccEEEeeh------hhhcchhHHHHHhh
Confidence 9754 48999999999999999988888888888888888776543 455566778887 99999999999988
Q ss_pred HHhhhHHHHHHHHHHHHhhcccccchhHHHHHH-HHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHH
Q 023815 171 GYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTT-GVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNL 249 (276)
Q Consensus 171 ~~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l 249 (276)
++.....+| |.+ +-| +..++..+.. +--..|+...+.+++.+|.++|.++|+++.+.++|+++-.+++..-
T Consensus 205 tfnwGAllG-w~A----~~g---~~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf~ 276 (353)
T KOG1381|consen 205 TFNWGALLG-WCA----LKG---SLSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGFG 276 (353)
T ss_pred hcchhhhhc-chh----hcC---ccChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhhh
Confidence 776444444 322 223 1222222221 1122467778999999999999999999999999998887776543
No 52
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.62 E-value=3.9e-16 Score=138.48 Aligned_cols=212 Identities=16% Similarity=0.139 Sum_probs=148.8
Q ss_pred hHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCC--CC
Q 023815 22 LKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKP--DL 99 (276)
Q Consensus 22 ~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~--~R 99 (276)
.+.++.|+|++||+.-...+++...|+++|.+.+ +++. +. .+.++..+.+.++|++||+++...|++++| +|
T Consensus 91 ~k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~-s~~~-l~----~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~R 164 (409)
T KOG1380|consen 91 GKYARCYLELSKPRLTMLVVLTTMTGYALAPGPF-SFPT-LL----YTTVGTGLCSASANAINQIFEPPFDSQMKRTQNR 164 (409)
T ss_pred cchHHHHHHhcccceEEEEeeeccccccccccCC-Ccch-hH----HHhhhhHHHHhhhHhhhhhccCCchhhhHhhccc
Confidence 3568899999999987788888888999997653 3332 21 234677888999999999999999999875 89
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHH
Q 023815 100 PLASGDFSIKTGVAITLTCAMMSLAMGIM-IGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQF 178 (276)
Q Consensus 100 pl~~G~is~~~a~~~~~~~~~~g~~l~~~-~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l 178 (276)
|+++|++++.+|+.++.+....|+.+.++ .|+....++ ..-.++|...|.| +||... .|..+|.+.|+++++
T Consensus 165 plv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lg----a~Ni~LY~~vYTP--lKrihi-inTWvGavVGAIPPL 237 (409)
T KOG1380|consen 165 PLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALG----AGNIFLYAGVYTP--LKRIHI-INTWVGAVVGAIPPL 237 (409)
T ss_pred ccccCccChHHHHHHHHHhccccceeeeecccHHHHHHh----hcchheeeccccc--hhhhhh-hhhHHHHHhccCCcc
Confidence 99999999999999998888888866544 665443332 2233444443333 899984 678999999999999
Q ss_pred HHHHHHHHHhhcccccchhHHHHHHHHHHHHH--HHHHHHccCCChHhhHhcCCcccchh---hchHhHHHHHHHHHHHh
Q 023815 179 SFFIHIQKYVLGRSVVITRSLIFTTGVITCMS--LAKALLKDLHDVDGDKEYGIRTFSVM---LGKERMIKELLNLFKNM 253 (276)
Q Consensus 179 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~e~D~~aG~~Tl~v~---lG~~~a~~l~~~l~~~~ 253 (276)
.+|.+. .|. .++..+.....++.|. .-..+..++|| +..++|.+++++. +-++.+.+.+..++.+.
T Consensus 238 MGwAAa----sg~---l~~ga~iLa~~LyaWQfPHFnaLS~~lR~--DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~ 308 (409)
T KOG1380|consen 238 MGWAAA----SGL---LDPGAMILAGILYAWQFPHFNALSWNLRN--DYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLS 308 (409)
T ss_pred chhhhh----ccC---CCccHHHHHHHHHHhcccchhhhhhhhch--hhhhccEEEEEeeccchhhHHHHHHHHHHhhhh
Confidence 888752 231 2233333322333332 23334445543 4579999999985 44577888888887776
Q ss_pred hh
Q 023815 254 DL 255 (276)
Q Consensus 254 ~~ 255 (276)
+.
T Consensus 309 ~~ 310 (409)
T KOG1380|consen 309 YA 310 (409)
T ss_pred cc
Confidence 55
No 53
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.53 E-value=1.1e-15 Score=130.00 Aligned_cols=222 Identities=16% Similarity=0.089 Sum_probs=153.4
Q ss_pred hhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccch--hhhhhcCCC
Q 023815 21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDV--KIDKINKPD 98 (276)
Q Consensus 21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~--~~D~~~~~~ 98 (276)
..++.+.|+...||+....++.+...|.++|..+....++.+...++ +.++....+.+.|..|.|+|. .+|.+...+
T Consensus 57 ~~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~~~fl-~a~avlavh~agnlvntyfdf~kgid~kkadd 135 (359)
T KOG4581|consen 57 TFMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLATFFL-CAFAVLAVHCAGNLVNTYFDFIKGIDHKKADD 135 (359)
T ss_pred HHHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHHHHHH-HHhhheeeecccchhhhhhhhhhccccccccc
Confidence 55789999999999998888889999999997543223333322222 245566688999999999997 478876679
Q ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHH---HHhchh---HHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHH
Q 023815 99 LPLASGDFSIKTGVAITLTCAMMSLAMG---IMIGSP---PLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGY 172 (276)
Q Consensus 99 Rpl~~G~is~~~a~~~~~~~~~~g~~l~---~~~~~~---~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~ 172 (276)
|.++...+++.++..++.++...|...+ ..+++. .+.+..+.++--+++|+.+ +.+|+.. +|.+++-+.+
T Consensus 136 rtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytgg---igfkyia-lgdliili~f 211 (359)
T KOG4581|consen 136 RTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGG---IGFKYIA-LGDLIILILF 211 (359)
T ss_pred hhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecc---cceEEEe-ccCEEEEEee
Confidence 9999999999999999988887765443 233432 2233334455557899973 3689888 5888887888
Q ss_pred hhhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHH
Q 023815 173 GVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN 252 (276)
Q Consensus 173 g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~ 252 (276)
|++..+-.|.. |+ | ...+.+. .+. ....+-+-++.+.||.||.|+||++|+-|+++.+|+..+-.++..++..
T Consensus 212 gpiavlfaf~~-q~---g-~l~~~~l-~ya-iplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~ 284 (359)
T KOG4581|consen 212 GPIAVLFAFAI-QT---G-HLAIFPL-GYA-IPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFA 284 (359)
T ss_pred chHHHHHHHHH-hc---C-ceeEEee-hhe-eeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHH
Confidence 86554433332 22 2 1122221 111 1222234467889999999999999999999999998888777665544
Q ss_pred hh
Q 023815 253 MD 254 (276)
Q Consensus 253 ~~ 254 (276)
-|
T Consensus 285 py 286 (359)
T KOG4581|consen 285 PY 286 (359)
T ss_pred HH
Confidence 44
No 54
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=93.31 E-value=0.71 Score=41.97 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhHhhcccchhhhhhcCCCCccc
Q 023815 71 VPAALMAIYMTAINQLVDVKIDKINKPDLPLA 102 (276)
Q Consensus 71 ~~~~~~~~~~~~~Nd~~D~~~D~~~~~~Rpl~ 102 (276)
+.+......++..|+..|.|+|++|+|+.+.+
T Consensus 183 lp~gil~~~Il~aNNirDie~D~~~gk~TLav 214 (303)
T COG1575 183 LPVGILIANILLANNLRDIEEDIRNGKYTLAV 214 (303)
T ss_pred HHHHHHHHHHHHhcccccchhHHhcCCcceee
Confidence 33444566677899999999999998754433
No 55
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=92.34 E-value=3.3 Score=37.39 Aligned_cols=55 Identities=16% Similarity=0.162 Sum_probs=32.7
Q ss_pred HHHHHHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhc
Q 023815 74 ALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIG 130 (276)
Q Consensus 74 ~~~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~ 130 (276)
.+...+...+||+-|+|.|++.+. |.++. ++..+.+..+...+..++..+-...+
T Consensus 175 ~l~~~~~~~in~i~Die~D~~aGi-~Tlav-~lG~~~a~~~~~~~~~~a~~~~~~~~ 229 (282)
T PRK12875 175 WLWAMGMHTFSAIPDIEPDRAAGI-RTTAT-VLGERRTYAYCAACWLLAAAAFAAVD 229 (282)
T ss_pred HHHHHHHHHHHhccCHHHHHHcCC-ccchh-hccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344445567899999999998653 33332 34456666666655555544433333
No 56
>PRK13591 ubiA prenyltransferase; Provisional
Probab=91.86 E-value=1.3 Score=40.56 Aligned_cols=66 Identities=21% Similarity=0.368 Sum_probs=35.7
Q ss_pred HhhcccchhhhhhcCC-CCccccCCCCHHHHHHHHHHHHHH---HHHHHHHhc-----hhHHHHHHHHHHHHHHHhcC
Q 023815 82 AINQLVDVKIDKINKP-DLPLASGDFSIKTGVAITLTCAMM---SLAMGIMIG-----SPPLAWGLILWFILVTAYSI 150 (276)
Q Consensus 82 ~~Nd~~D~~~D~~~~~-~Rpl~~G~is~~~a~~~~~~~~~~---g~~l~~~~~-----~~~~~~~~~~~~~~~~~Ys~ 150 (276)
.+||+-|.|.|+.+++ .-|..=| ++.+..+...+.++ ..+.+...| +...+..+..++...+-|+.
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG---~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~ 271 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLG---EQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS 271 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEEC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence 5899999999999764 3333334 34443333322222 222222223 22233345567777788998
No 57
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=91.19 E-value=1.7 Score=39.29 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=35.6
Q ss_pred HHHHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhc
Q 023815 76 MAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIG 130 (276)
Q Consensus 76 ~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~ 130 (276)
...+...+||+-|.|.||+++. |.++. ++.++.+..++..+.+++.+.....+
T Consensus 172 ~~~a~~ii~~irDie~Dr~~G~-~Tlpv-~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 172 WGMASHAFGAVQDVVADREAGI-ASIAT-VLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred HHHHHHHHHhCcchHhHHHcCC-ccchH-HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556678999999999998663 44443 45567777777766666655443333
No 58
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=91.16 E-value=1.2 Score=39.89 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=23.6
Q ss_pred HHHHhHhhcccchhhhhhcCC-CCccccCCCCHHHHHHHHHHHH
Q 023815 77 AIYMTAINQLVDVKIDKINKP-DLPLASGDFSIKTGVAITLTCA 119 (276)
Q Consensus 77 ~~~~~~~Nd~~D~~~D~~~~~-~Rpl~~G~is~~~a~~~~~~~~ 119 (276)
....+.+||.-|+|.|++++. .=|..-|+ +.+..+...+.
T Consensus 174 ~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~---~~t~~~~~~~~ 214 (285)
T PRK12872 174 SFIREIVFDIKDIEGDRKSGLKTLPIVLGK---ERTLKFLLILN 214 (285)
T ss_pred HHHHHHHHhcccchhHHHcCCcccchhcch---HHHHHHHHHHH
Confidence 334457899999999998653 33443343 44444443333
No 59
>PLN02922 prenyltransferase
Probab=89.75 E-value=2.4 Score=38.90 Aligned_cols=40 Identities=5% Similarity=-0.017 Sum_probs=24.8
Q ss_pred HHHHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHHHHHH
Q 023815 76 MAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLT 117 (276)
Q Consensus 76 ~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~~ 117 (276)
........||+-|+|+|++++++. ++- ++.++.+..+...
T Consensus 200 l~~~iL~~Nn~rD~e~D~~~Gk~T-L~v-~lG~~~a~~l~~~ 239 (315)
T PLN02922 200 TTTLILFCSHFHQIDGDRAVGKMS-PLV-RLGTEKGSRVVRW 239 (315)
T ss_pred HHHHHHHHccCcchhhHHHcCccc-eee-EEChHHHHHHHHH
Confidence 344556799999999999987533 322 2334555444333
No 60
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=89.54 E-value=3 Score=37.40 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=20.6
Q ss_pred HHHHHHhHhhcccchhhhhhcC-CCCccccC
Q 023815 75 LMAIYMTAINQLVDVKIDKINK-PDLPLASG 104 (276)
Q Consensus 75 ~~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~~G 104 (276)
+.+..-..+||.-|+|.|++.+ |.-|..-|
T Consensus 169 ~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G 199 (282)
T TIGR01475 169 FWIAGFDLIYAIQDYEFDRKNGLHSIPARFG 199 (282)
T ss_pred HHHHHHHHHHHHhhHHhHHHcCCCchHHHhc
Confidence 3344445699999999998755 45555555
No 61
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=89.05 E-value=2.9 Score=38.43 Aligned_cols=44 Identities=18% Similarity=0.116 Sum_probs=26.9
Q ss_pred HHHHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHHHHHHHHHH
Q 023815 76 MAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMM 121 (276)
Q Consensus 76 ~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~~~~~~ 121 (276)
........||+-|+|.|+.+++ |.++. ++.++.+......+..+
T Consensus 201 l~~~ill~Nn~~D~e~D~~~gk-~TL~v-~lG~~~a~~l~~~l~~~ 244 (317)
T PRK13387 201 TIANIMLANNLRDLDEDIKNHR-YTLVY-YIGREKGVVLFAILFYA 244 (317)
T ss_pred HHHHHHHhcCCccchhHHHcCC-eeeee-eEcHHhHHHHHHHHHHH
Confidence 3444567999999999999765 33332 34455555554443333
No 62
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=89.04 E-value=3 Score=38.07 Aligned_cols=39 Identities=10% Similarity=0.035 Sum_probs=24.4
Q ss_pred HHHHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHHHHH
Q 023815 76 MAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITL 116 (276)
Q Consensus 76 ~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~ 116 (276)
........||+-|+|+|+++++ |.++. ++.++.+..+..
T Consensus 186 l~~~IL~~Nn~rD~e~D~~~Gk-~TL~v-~lG~~~a~~ly~ 224 (304)
T PRK07419 186 ATSLILFCSHFHQVEDDLAAGK-RSPIV-RLGTKRGAQLLP 224 (304)
T ss_pred HHHHHHHHcCCcchhhHHHcCC-cceee-eechHhHHHHHH
Confidence 3445567999999999999875 33332 333444444433
No 63
>PRK13592 ubiA prenyltransferase; Provisional
Probab=88.69 E-value=2.7 Score=38.24 Aligned_cols=48 Identities=15% Similarity=0.066 Sum_probs=31.7
Q ss_pred HHHHHHHHHccCCChHhhHhc--CCcccchhhchHhHHHHHHHHHHHhhh
Q 023815 208 CMSLAKALLKDLHDVDGDKEY--GIRTFSVMLGKERMIKELLNLFKNMDL 255 (276)
Q Consensus 208 ~~~~~~~~~~~~~D~e~D~~a--G~~Tl~v~lG~~~a~~l~~~l~~~~~~ 255 (276)
+.+.+..++||+.|+|-|+.+ .++--.=+..++.++..+..+..++..
T Consensus 57 ~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~ 106 (299)
T PRK13592 57 GFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVL 106 (299)
T ss_pred HHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Confidence 334567889999999999754 333333355567777777666555544
No 64
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=87.77 E-value=5.5 Score=36.30 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=21.3
Q ss_pred HHHHHHHHhHhhcccchhhhhhcC-CCCccccC
Q 023815 73 AALMAIYMTAINQLVDVKIDKINK-PDLPLASG 104 (276)
Q Consensus 73 ~~~~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~~G 104 (276)
.++...+-..+|+.-|+|.|++.+ +.-|+.-|
T Consensus 186 ~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G 218 (300)
T PRK13106 186 TILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG 218 (300)
T ss_pred HHHHHHHHHHHHHccchhhHHHCCCCccHHHHh
Confidence 334444445789999999998755 44555445
No 65
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=86.32 E-value=4.4 Score=36.45 Aligned_cols=33 Identities=21% Similarity=0.135 Sum_probs=22.2
Q ss_pred HHHHHHHHhHhhcccchhhhhhcC-CCCccccCC
Q 023815 73 AALMAIYMTAINQLVDVKIDKINK-PDLPLASGD 105 (276)
Q Consensus 73 ~~~~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~~G~ 105 (276)
.++.+..-..+|++.|+|.|++.+ |.-|..-|+
T Consensus 169 ~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 202 (281)
T TIGR01474 169 NILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD 202 (281)
T ss_pred HHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence 334444555689999999999854 455555564
No 66
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=85.69 E-value=4 Score=36.96 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=19.3
Q ss_pred HHHHhHhhcccchhhhhhcC-CCCccccCC
Q 023815 77 AIYMTAINQLVDVKIDKINK-PDLPLASGD 105 (276)
Q Consensus 77 ~~~~~~~Nd~~D~~~D~~~~-~~Rpl~~G~ 105 (276)
+..-..+|++.|+|.|++.+ |.-|..-|+
T Consensus 175 ~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 204 (291)
T PRK12886 175 VAGFDILYALQDLEFDRKEGLHSIPAKLGV 204 (291)
T ss_pred HHHHHHHHHhccHHhHHHcCCcCcchhcCc
Confidence 33334578889999999754 555665555
No 67
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=85.55 E-value=2.2 Score=38.11 Aligned_cols=46 Identities=17% Similarity=0.086 Sum_probs=32.4
Q ss_pred HHHHHHHHccCCChHhhHhcCCcccchhhc---hHhHHHHHHHHHHHhhh
Q 023815 209 MSLAKALLKDLHDVDGDKEYGIRTFSVMLG---KERMIKELLNLFKNMDL 255 (276)
Q Consensus 209 ~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG---~~~a~~l~~~l~~~~~~ 255 (276)
...+....||+-|+|.|++. ++.=|..-| .+.+.....++..++.+
T Consensus 49 ~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~~~~~~~~~ 97 (279)
T PRK12884 49 ASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAILLFILGLI 97 (279)
T ss_pred HHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34567889999999999988 666676666 45666666655555443
No 68
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=85.31 E-value=6.8 Score=35.39 Aligned_cols=43 Identities=9% Similarity=-0.022 Sum_probs=26.9
Q ss_pred HHHHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHHHHHHHHH
Q 023815 76 MAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAM 120 (276)
Q Consensus 76 ~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~~~~~ 120 (276)
........||.-|+|+|+.+++ |.++. ++.++.+..+...+..
T Consensus 173 ~~~~iL~~Nn~rD~e~D~~~Gk-~TL~v-~lG~~~a~~l~~~l~~ 215 (285)
T TIGR02235 173 ATTLILFCSHFHQVEDDLAHGK-RSPVV-RLGTKLAAKIVPWVIS 215 (285)
T ss_pred HHHHHHHhcCCccchhHHHcCC-cceeh-eecHHhHHHHHHHHHH
Confidence 3445667999999999999765 33332 3445555555444433
No 69
>PLN00012 chlorophyll synthetase; Provisional
Probab=85.18 E-value=7.9 Score=36.44 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=20.7
Q ss_pred HHHHHhHhhcccchhhhhhcC-CCCccccCC
Q 023815 76 MAIYMTAINQLVDVKIDKINK-PDLPLASGD 105 (276)
Q Consensus 76 ~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~~G~ 105 (276)
...+....||+-|+|.|++.+ +.-|..-|+
T Consensus 264 ~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~ 294 (375)
T PLN00012 264 AGLGIAIVNDFKSIEGDRALGLQSLPVAFGV 294 (375)
T ss_pred HHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence 444456799999999999864 444554454
No 70
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=85.08 E-value=5 Score=37.09 Aligned_cols=30 Identities=30% Similarity=0.339 Sum_probs=19.5
Q ss_pred HHHHHhHhhcccchhhhhhcCC-CCccccCC
Q 023815 76 MAIYMTAINQLVDVKIDKINKP-DLPLASGD 105 (276)
Q Consensus 76 ~~~~~~~~Nd~~D~~~D~~~~~-~Rpl~~G~ 105 (276)
.......+||..|+|.|+..+. .-|+.=|+
T Consensus 192 ~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~ 222 (331)
T PRK12392 192 MAIALIIMNDFKSVEGDKEGGLKSLTVMIGA 222 (331)
T ss_pred HHHHHHHHHcccchhhHHHcCCeeeEeEEcH
Confidence 3344456899999999998653 33443343
No 71
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=84.91 E-value=7 Score=35.74 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=19.7
Q ss_pred HHHHhHhhcccchhhhhhcC-CCCccccCC
Q 023815 77 AIYMTAINQLVDVKIDKINK-PDLPLASGD 105 (276)
Q Consensus 77 ~~~~~~~Nd~~D~~~D~~~~-~~Rpl~~G~ 105 (276)
.......||+.|+|.|++.+ +.-|..-|+
T Consensus 202 ~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~ 231 (314)
T PRK07566 202 AHGIMTLNDFKSVEGDRQLGLRSLPVVFGE 231 (314)
T ss_pred HHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence 33446799999999999864 344444443
No 72
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=84.64 E-value=5.4 Score=35.91 Aligned_cols=44 Identities=16% Similarity=0.137 Sum_probs=25.3
Q ss_pred HHHHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHHHHHHHHHH
Q 023815 76 MAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMM 121 (276)
Q Consensus 76 ~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~~~~~~ 121 (276)
........||+-|+|.|+.+++ |.++. ++..+.+..+...+..+
T Consensus 180 ~~~~~~~~n~~~D~~~D~~~G~-~Tl~v-~lG~~~a~~~~~~l~~~ 223 (293)
T PRK06080 180 LIGAVLLANNIRDIETDRENGK-NTLAV-RLGDKNARRLHAALLAL 223 (293)
T ss_pred HHHHHHHhcCCCcchhHHHcCC-eeEEe-eECcHhHHHHHHHHHHH
Confidence 3444457899999999998764 33332 23344444444433333
No 73
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=84.23 E-value=5.9 Score=35.77 Aligned_cols=31 Identities=19% Similarity=0.129 Sum_probs=21.2
Q ss_pred HHHHHHhHhhcccchhhhhhcC-CCCccccCC
Q 023815 75 LMAIYMTAINQLVDVKIDKINK-PDLPLASGD 105 (276)
Q Consensus 75 ~~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~~G~ 105 (276)
+.+..-..+|++.|+|.|++.+ |.-|..-|.
T Consensus 170 ~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~ 201 (284)
T PRK12888 170 LWIGGFDLIYACQDAEVDRRIGVRSVPARFGV 201 (284)
T ss_pred HHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence 3444556799999999999865 444544454
No 74
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=83.46 E-value=10 Score=34.07 Aligned_cols=31 Identities=19% Similarity=0.082 Sum_probs=20.4
Q ss_pred HHHHHHhHhhcccchhhhhhcC-CCCccccCC
Q 023815 75 LMAIYMTAINQLVDVKIDKINK-PDLPLASGD 105 (276)
Q Consensus 75 ~~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~~G~ 105 (276)
+.+..-...|++.|+|.|++++ |.-|..-|.
T Consensus 176 ~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~ 207 (285)
T PRK12847 176 FWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN 207 (285)
T ss_pred HHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence 3344444689999999999865 344554454
No 75
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=81.20 E-value=11 Score=33.96 Aligned_cols=40 Identities=20% Similarity=0.106 Sum_probs=24.8
Q ss_pred HHHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHHHHHHH
Q 023815 77 AIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTC 118 (276)
Q Consensus 77 ~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~~~ 118 (276)
.......||.-|+|.|+.++++ .++. ++.++.+..+...+
T Consensus 177 ~~~il~~Nn~~D~~~D~~~Gk~-Tl~v-~lG~~~a~~l~~~l 216 (284)
T TIGR00751 177 ACAVLNINNLRDIPTDARAGKN-TLAV-RLGDARTRMYHQGL 216 (284)
T ss_pred HHHHHHHcCcccchhHHHcCCE-eehh-hcchHhHHHHHHHH
Confidence 3455569999999999997653 3322 34455555444333
No 76
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=80.91 E-value=13 Score=33.92 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=23.5
Q ss_pred HHHHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHHHHH
Q 023815 76 MAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITL 116 (276)
Q Consensus 76 ~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~ 116 (276)
........||+-|+|.|+++++ |.++. ++.++.+.....
T Consensus 195 ~~~~i~~~n~~~D~e~D~~~G~-~Tlpv-~lG~~~a~~~~~ 233 (306)
T TIGR02056 195 AGLGIAIVNDFKSVEGDRALGL-QSLPV-AFGIETAAWICV 233 (306)
T ss_pred HHHHHHHHHHccChHHHHHcCC-cCcch-hcChHHHHHHHH
Confidence 3444557999999999998653 33332 333444444443
No 77
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=80.78 E-value=3.4 Score=37.57 Aligned_cols=46 Identities=20% Similarity=0.073 Sum_probs=29.5
Q ss_pred HHHHHHHccCCChHhhHhc----CCcccchhhchHhHHHHHHHHHHHhhh
Q 023815 210 SLAKALLKDLHDVDGDKEY----GIRTFSVMLGKERMIKELLNLFKNMDL 255 (276)
Q Consensus 210 ~~~~~~~~~~~D~e~D~~a----G~~Tl~v~lG~~~a~~l~~~l~~~~~~ 255 (276)
..+...+||+.|+|.|++. .+..-.=++..+.+..++.++..++.+
T Consensus 59 ~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~l~ 108 (295)
T PRK12324 59 SSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLA 108 (295)
T ss_pred HHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHH
Confidence 4466789999999999985 222223345556676666655555443
No 78
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=80.66 E-value=11 Score=33.72 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=20.6
Q ss_pred HHHHHHhHhhcccchhhhhhcC-CCCccccCC
Q 023815 75 LMAIYMTAINQLVDVKIDKINK-PDLPLASGD 105 (276)
Q Consensus 75 ~~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~~G~ 105 (276)
+-+..-...|++.|+|.|++.+ |.-|..-|.
T Consensus 173 ~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 204 (282)
T PRK12848 173 LWTVAYDTQYAMVDRDDDLKIGIKSTAILFGR 204 (282)
T ss_pred HHHHHHHHHHHhccHhhHHHcCCccccHHhcc
Confidence 3344445679999999999865 455555554
No 79
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=80.27 E-value=15 Score=32.82 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=18.9
Q ss_pred HHHhHhhcccchhhhhhcCC-CCccccCC
Q 023815 78 IYMTAINQLVDVKIDKINKP-DLPLASGD 105 (276)
Q Consensus 78 ~~~~~~Nd~~D~~~D~~~~~-~Rpl~~G~ 105 (276)
......||+-|+|.|+++++ .-|..-|+
T Consensus 175 ~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~ 203 (283)
T TIGR01476 175 HGIMTLNDFKSVEGDRQLGLRSLPVMIGV 203 (283)
T ss_pred HHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence 33457999999999998653 33443343
No 80
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=80.21 E-value=24 Score=32.20 Aligned_cols=23 Identities=9% Similarity=0.216 Sum_probs=17.4
Q ss_pred HHHHHHhHhhcccchhhhhhcCC
Q 023815 75 LMAIYMTAINQLVDVKIDKINKP 97 (276)
Q Consensus 75 ~~~~~~~~~Nd~~D~~~D~~~~~ 97 (276)
+.......+||+-|+|.||+++.
T Consensus 193 ~~~~~~~l~~di~D~egD~~~Gi 215 (308)
T PRK12887 193 VFTFAIAIFKDIPDMEGDRQYQI 215 (308)
T ss_pred HHHHHHHHHHhccchhhHHHcCC
Confidence 34445556999999999998763
No 81
>PRK11383 hypothetical protein; Provisional
Probab=79.80 E-value=28 Score=28.09 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCCCCccccc--cchhhhHHHHHHHHhh-hHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHH
Q 023815 138 LILWFILVTAYSIDLPFLRWK--RNAFLAAISIMIGYGV-GIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKA 214 (276)
Q Consensus 138 ~~~~~~~~~~Ys~~~pP~~lK--~~~~~~~~~v~~~~g~-~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 214 (276)
++.+++..+.|.. -.|-| ..+. .+...+.++.+ +..++.+.. .+.+.+...+....+...+...+.-++.
T Consensus 48 l~lglF~avs~QK---~vRD~~egi~v-t~~f~~~cw~a~l~~i~LL~i---GLwNA~l~lsEKGfY~~af~lsLFgai~ 120 (145)
T PRK11383 48 LVLGLFSAASYQK---TVRDKYEGIPT-TSIYYMTCLTVFIISVALLMV---GLWNATLLLSEKGFYGLAFFLSLFGAVA 120 (145)
T ss_pred HHHHHHHHHHHHH---HHhhcccCCCh-hHHHHHHHHHHHHHHHHHHHH---HHhcCCcchhhhhHHHHHHHHHHHHHHH
Confidence 3455555566653 12334 3342 34666666652 222222211 1222222222223343333322334567
Q ss_pred HHccCCChHhhH
Q 023815 215 LLKDLHDVDGDK 226 (276)
Q Consensus 215 ~~~~~~D~e~D~ 226 (276)
.-+++||....+
T Consensus 121 vQKn~RD~~~~~ 132 (145)
T PRK11383 121 VQKNIRDAGINP 132 (145)
T ss_pred HHhhhhhhhhcc
Confidence 789999985543
No 82
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=78.61 E-value=5.2 Score=34.67 Aligned_cols=48 Identities=23% Similarity=0.135 Sum_probs=30.1
Q ss_pred HHHHHHHHHccCCChHhhHhc-CCcccchhhc---hHhHHHHHHHHHHHhhh
Q 023815 208 CMSLAKALLKDLHDVDGDKEY-GIRTFSVMLG---KERMIKELLNLFKNMDL 255 (276)
Q Consensus 208 ~~~~~~~~~~~~~D~e~D~~a-G~~Tl~v~lG---~~~a~~l~~~l~~~~~~ 255 (276)
+...+.+..||+.|.|.|+.. +++.-|..-| .+.+.+.+..+..++.+
T Consensus 34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~ 85 (257)
T PF01040_consen 34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLL 85 (257)
T ss_pred HHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHH
Confidence 345567889999999999985 3444444333 34455555555555544
No 83
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=77.90 E-value=25 Score=31.70 Aligned_cols=34 Identities=9% Similarity=0.099 Sum_probs=22.5
Q ss_pred HHHHHHHHhHhhcccchhhhhhcC-CCCccccCCC
Q 023815 73 AALMAIYMTAINQLVDVKIDKINK-PDLPLASGDF 106 (276)
Q Consensus 73 ~~~~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~~G~i 106 (276)
.++.+..-..+|++.|+|.|++.+ +.-|..-|+-
T Consensus 175 ~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~ 209 (290)
T PRK12870 175 TVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRY 209 (290)
T ss_pred HHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccc
Confidence 344455556799999999999765 4445544543
No 84
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=77.80 E-value=23 Score=31.99 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=21.6
Q ss_pred HHHHHHHhHhhcccchhhhhhcC-CCCccccCC
Q 023815 74 ALMAIYMTAINQLVDVKIDKINK-PDLPLASGD 105 (276)
Q Consensus 74 ~~~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~~G~ 105 (276)
++-+..-..+|++.|+|.|++.+ |.-|..-|.
T Consensus 177 ~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~ 209 (291)
T PRK12874 177 MFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE 209 (291)
T ss_pred HHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence 34444456699999999998754 455555554
No 85
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=77.31 E-value=12 Score=33.38 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=18.9
Q ss_pred HHHHhHhhcccchhhhhhcC-CCCccccC
Q 023815 77 AIYMTAINQLVDVKIDKINK-PDLPLASG 104 (276)
Q Consensus 77 ~~~~~~~Nd~~D~~~D~~~~-~~Rpl~~G 104 (276)
+..-...||+-|+|.|++++ |.-|..-|
T Consensus 167 ~~~~~~~~~~~D~~~D~~~G~~tlpv~~G 195 (279)
T PRK09573 167 TWSREIVKDIEDIEGDLKENVITLPIKYG 195 (279)
T ss_pred HHHHHHHhhhhhhhhHHHCCCccccHHhh
Confidence 33445679999999999754 44455444
No 86
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=76.72 E-value=29 Score=31.56 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=21.8
Q ss_pred HHHHHHhHhhcccchhhhhhcC-CCCccccCC
Q 023815 75 LMAIYMTAINQLVDVKIDKINK-PDLPLASGD 105 (276)
Q Consensus 75 ~~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~~G~ 105 (276)
+.+..-...||+.|+|.|++++ |.-|+.-|+
T Consensus 186 ~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~ 217 (297)
T PRK12871 186 PWTMAHLGLNDFIDLENDRARGMKSIAVLYGM 217 (297)
T ss_pred HHHHHHHHHHHHhhhhhHHHcCCeeeeeeech
Confidence 3344456799999999999864 455665555
No 87
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=75.66 E-value=15 Score=32.85 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=18.5
Q ss_pred HHhHhhcccchhhhhhcC-CCCccccCC
Q 023815 79 YMTAINQLVDVKIDKINK-PDLPLASGD 105 (276)
Q Consensus 79 ~~~~~Nd~~D~~~D~~~~-~~Rpl~~G~ 105 (276)
.....||.-|+|.|++.+ |.-|..-|+
T Consensus 169 ~~~~~~~~~D~e~D~~~G~~Tlpv~~G~ 196 (277)
T PRK12883 169 AREIMKDIEDIEGDKAKGAKTLPIIIGK 196 (277)
T ss_pred HHHHHhhhhhhccHHHcCCcCcChHhcH
Confidence 344579999999999865 444554443
No 88
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=73.34 E-value=19 Score=32.13 Aligned_cols=38 Identities=16% Similarity=0.352 Sum_probs=23.2
Q ss_pred HHHHHhHhhcccchhhhhhcC-CCCccccCCCCHHHHHHHHH
Q 023815 76 MAIYMTAINQLVDVKIDKINK-PDLPLASGDFSIKTGVAITL 116 (276)
Q Consensus 76 ~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~~G~is~~~a~~~~~ 116 (276)
...+-..+||+-|.|.|++++ |.-|..-| ++.+.....
T Consensus 169 ~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G---~~~t~~~~~ 207 (276)
T PRK12882 169 ATLAREIIKDVEDIEGDRAEGARTLPILIG---VRKALYVAA 207 (276)
T ss_pred HHHHHHHHhhhhhhhhHHHcCCccccHHhh---HHHHHHHHH
Confidence 344456799999999999865 34444333 344444433
No 89
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=73.08 E-value=65 Score=29.14 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=21.2
Q ss_pred HHHHHHHHhHhhcccchhhhhhcC-CCCccccCC
Q 023815 73 AALMAIYMTAINQLVDVKIDKINK-PDLPLASGD 105 (276)
Q Consensus 73 ~~~~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~~G~ 105 (276)
.++-..+-..+.++.|+|.|++.+ +.-|..-|+
T Consensus 168 ~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~ 201 (286)
T PRK12895 168 SSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGI 201 (286)
T ss_pred HHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCC
Confidence 334444446799999999999865 344444443
No 90
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=72.24 E-value=61 Score=29.63 Aligned_cols=30 Identities=20% Similarity=0.076 Sum_probs=19.6
Q ss_pred HHHHHhHhhcccchhhhhhcC-CCCccccCC
Q 023815 76 MAIYMTAINQLVDVKIDKINK-PDLPLASGD 105 (276)
Q Consensus 76 ~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~~G~ 105 (276)
.+..-..++++.|+|.|++.+ |.-|..-|.
T Consensus 204 w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 234 (314)
T PRK12878 204 WTIGYDTIYAHQDKEDDALIGVKSTARLFGD 234 (314)
T ss_pred HHHHHHHHHHhhhHhhHHHcCCcccchHhch
Confidence 334444578999999999754 445554454
No 91
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=70.40 E-value=15 Score=28.90 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=22.1
Q ss_pred hhhhcCCCCccccCCCCHHHHHHHHHHHHHHHHHHH
Q 023815 91 IDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMG 126 (276)
Q Consensus 91 ~D~~~~~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~ 126 (276)
-||.|+ .|.+-+.+|..|....+.+..++++.++
T Consensus 8 p~RLN~--ePvV~rGlT~~El~~~a~~~~~~g~~~g 41 (121)
T PF11990_consen 8 PDRLNR--EPVVFRGLTADELGLAAGVGFVAGLVVG 41 (121)
T ss_pred hhhhcC--CCCeecCCCHHHHHHHHHHHHHHHHHHH
Confidence 477775 4666667788888777666555554443
No 92
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=69.31 E-value=88 Score=28.25 Aligned_cols=35 Identities=20% Similarity=0.131 Sum_probs=22.8
Q ss_pred HHHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHH
Q 023815 77 AIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVA 113 (276)
Q Consensus 77 ~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~ 113 (276)
.......||.-|+|.|+++++ |.++. ++.++.+..
T Consensus 184 ~~~il~~n~~~D~e~D~~~G~-~Tlav-~lG~~~a~~ 218 (296)
T PRK05951 184 MALVLLSNNLRDIEDDERKGI-PTLAV-IFGRRGAAL 218 (296)
T ss_pred HHHHHHHCCCccchhHHHCCC-eeeee-eEcHhhHHH
Confidence 345567999999999998764 33332 444555533
No 93
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=69.28 E-value=9.4 Score=34.24 Aligned_cols=44 Identities=16% Similarity=0.003 Sum_probs=28.0
Q ss_pred HHHHHHHHccCCChHhhHhcCC---cccc-hhhchHhHHHHHHHHHHH
Q 023815 209 MSLAKALLKDLHDVDGDKEYGI---RTFS-VMLGKERMIKELLNLFKN 252 (276)
Q Consensus 209 ~~~~~~~~~~~~D~e~D~~aG~---~Tl~-v~lG~~~a~~l~~~l~~~ 252 (276)
...+-...||+-|+|-|++..+ |.+| =++.++.+..+...+..+
T Consensus 48 ~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~ 95 (279)
T PRK12869 48 ASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSAL 95 (279)
T ss_pred HHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHH
Confidence 3456688999999999997543 3333 344556666555544333
No 94
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=69.21 E-value=44 Score=29.95 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=17.3
Q ss_pred HHHHHHHhHhhcccchhhhhhcCC
Q 023815 74 ALMAIYMTAINQLVDVKIDKINKP 97 (276)
Q Consensus 74 ~~~~~~~~~~Nd~~D~~~D~~~~~ 97 (276)
.+...+--.++|+-|+|-||+++-
T Consensus 177 ~l~~~~~~~i~~~~D~e~D~~~G~ 200 (289)
T COG0382 177 ILWTLGYDIIYAIQDIEGDRKAGL 200 (289)
T ss_pred HHHHHHHHHHHhccCccchHhcCC
Confidence 333444446999999999998763
No 95
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=68.09 E-value=22 Score=27.55 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=23.3
Q ss_pred hhhhcCCCCccccCCCCHHHHHHHHHHHHHHHHHHH
Q 023815 91 IDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMG 126 (276)
Q Consensus 91 ~D~~~~~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~ 126 (276)
-||.|+ .|.+-+.+|..|.+..+.+..+++++++
T Consensus 5 p~RLN~--ePvV~rGlT~~El~~~~~~~~~~gl~~g 38 (111)
T TIGR03750 5 PDRLNR--EPVVFRGLTADELGVAAGVGLAAGLVLG 38 (111)
T ss_pred chhhcC--CCceecccCHHHHHHHHHHHHHHHHHHH
Confidence 477775 4666667788998887776666655444
No 96
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=66.65 E-value=12 Score=33.88 Aligned_cols=46 Identities=20% Similarity=0.029 Sum_probs=29.6
Q ss_pred HHHHHHHHHccCCChHhhHhcCC-cccchhhch---HhHHHHHHHHHHHh
Q 023815 208 CMSLAKALLKDLHDVDGDKEYGI-RTFSVMLGK---ERMIKELLNLFKNM 253 (276)
Q Consensus 208 ~~~~~~~~~~~~~D~e~D~~aG~-~Tl~v~lG~---~~a~~l~~~l~~~~ 253 (276)
+...+-..+||+.|+|-|++..+ +.=|..-|+ +.+..+..++.+++
T Consensus 56 ~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~~~~~ 105 (289)
T PLN02809 56 LLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGVGFLGAQLLLG 105 (289)
T ss_pred HHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 33456678999999999987654 456665564 55554444444443
No 97
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=66.38 E-value=11 Score=34.15 Aligned_cols=44 Identities=18% Similarity=0.012 Sum_probs=27.6
Q ss_pred HHHHHHHHccCCChHhhHhcCC---cccc-hhhchHhHHHHHHHHHHH
Q 023815 209 MSLAKALLKDLHDVDGDKEYGI---RTFS-VMLGKERMIKELLNLFKN 252 (276)
Q Consensus 209 ~~~~~~~~~~~~D~e~D~~aG~---~Tl~-v~lG~~~a~~l~~~l~~~ 252 (276)
...+-..+||+.|+|-|++..+ |.+| =++.++.+..+..++..+
T Consensus 56 ~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~ 103 (296)
T PRK04375 56 VAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVL 103 (296)
T ss_pred HHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 3456688999999999997432 3222 344556666665554433
No 98
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=65.20 E-value=14 Score=33.08 Aligned_cols=46 Identities=15% Similarity=-0.042 Sum_probs=28.6
Q ss_pred HHHHHHHHccCCChHhhHhcCC---cccch-hhchHhHHHHHHHHHHHhh
Q 023815 209 MSLAKALLKDLHDVDGDKEYGI---RTFSV-MLGKERMIKELLNLFKNMD 254 (276)
Q Consensus 209 ~~~~~~~~~~~~D~e~D~~aG~---~Tl~v-~lG~~~a~~l~~~l~~~~~ 254 (276)
...+-...||+-|+|-|++..+ |.+|. ++..+.+..+...+..++.
T Consensus 47 ~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~g~ 96 (280)
T TIGR01473 47 AAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLGV 96 (280)
T ss_pred HHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 3456688999999999997432 33332 4445666666555544433
No 99
>PRK08238 hypothetical protein; Validated
Probab=63.36 E-value=15 Score=35.77 Aligned_cols=47 Identities=19% Similarity=0.029 Sum_probs=30.3
Q ss_pred HHHHHHHHccCCChHhhHhcC-Ccccc---hhhchHhHHHHHHHHHHHhhh
Q 023815 209 MSLAKALLKDLHDVDGDKEYG-IRTFS---VMLGKERMIKELLNLFKNMDL 255 (276)
Q Consensus 209 ~~~~~~~~~~~~D~e~D~~aG-~~Tl~---v~lG~~~a~~l~~~l~~~~~~ 255 (276)
...+..++||+-|+|.||+.- ++.=| =++..+.+..+..++..++.+
T Consensus 238 ~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~ 288 (479)
T PRK08238 238 CASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLA 288 (479)
T ss_pred HHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 345678899999999999862 23333 344456666666665555444
No 100
>PRK13595 ubiA prenyltransferase; Provisional
Probab=60.44 E-value=1.3e+02 Score=27.45 Aligned_cols=52 Identities=12% Similarity=0.154 Sum_probs=32.2
Q ss_pred HHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhch
Q 023815 78 IYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGS 131 (276)
Q Consensus 78 ~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~ 131 (276)
.+...+-++.|.|-||+.+- |.++. ++..+.+..++..+.+++..+...++.
T Consensus 183 ~g~dii~ai~DiegDr~~Gi-~Slpv-~lG~r~a~~~a~~~~~~a~~~~~~~~~ 234 (292)
T PRK13595 183 VGKHAFDAAQDIPADRAAGT-RTVAT-TLGVRGTALYALAWFLLAGALLWPVSR 234 (292)
T ss_pred HHHHHHHhccChHhHHHcCC-eechH-HhCcHhHHHHHHHHHHHHHHHHHHhcc
Confidence 44456778888999998652 33322 234566677777777666665555553
No 101
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=59.17 E-value=18 Score=33.05 Aligned_cols=46 Identities=15% Similarity=-0.060 Sum_probs=28.9
Q ss_pred HHHHHHHHccCCChHhhHhcCC---ccc-chhhchHhHHHHHHHHHHHhh
Q 023815 209 MSLAKALLKDLHDVDGDKEYGI---RTF-SVMLGKERMIKELLNLFKNMD 254 (276)
Q Consensus 209 ~~~~~~~~~~~~D~e~D~~aG~---~Tl-~v~lG~~~a~~l~~~l~~~~~ 254 (276)
...+-..+||+.|+|-|++..+ |-+ .=++.++.+..+...+..++.
T Consensus 59 ~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~g~ 108 (306)
T PRK13362 59 VVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAGF 108 (306)
T ss_pred HHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3456788999999999986533 323 234455666666655544443
No 102
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=58.39 E-value=1.5e+02 Score=27.02 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=15.6
Q ss_pred hhcccchhhhhhcC-CCCccccCC
Q 023815 83 INQLVDVKIDKINK-PDLPLASGD 105 (276)
Q Consensus 83 ~Nd~~D~~~D~~~~-~~Rpl~~G~ 105 (276)
+-...|+|.|++.+ |.-|..-|.
T Consensus 189 iyA~qD~edD~~~Gv~slpv~~G~ 212 (294)
T PRK12873 189 VYAMADRRDDAKIGLNSSALSLGS 212 (294)
T ss_pred HHHHHhHhhHHHcCCcccchhcCh
Confidence 44556999999865 556666664
No 103
>PLN02878 homogentisate phytyltransferase
Probab=55.79 E-value=49 Score=29.88 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=22.6
Q ss_pred HHHHhHhhcccchhhhhhcCC-CCccccCCCCHHHHHHHHH
Q 023815 77 AIYMTAINQLVDVKIDKINKP-DLPLASGDFSIKTGVAITL 116 (276)
Q Consensus 77 ~~~~~~~Nd~~D~~~D~~~~~-~Rpl~~G~is~~~a~~~~~ 116 (276)
......+||+-|.|-||+.+. .-|+. +.++.+..++.
T Consensus 169 ~~~i~i~KDi~DieGD~~~Gi~Tlpv~---lG~~~~~~i~~ 206 (280)
T PLN02878 169 SVVIALFKDIPDVEGDRIFGIRSFSVR---LGQKRVFWLCV 206 (280)
T ss_pred HHHHHHHhhCcCchhHHHCCCceechh---hChHHHHHHHH
Confidence 344457999999999998652 33332 33444444443
No 104
>PLN02776 prenyltransferase
Probab=51.41 E-value=37 Score=31.58 Aligned_cols=45 Identities=9% Similarity=-0.011 Sum_probs=29.0
Q ss_pred HHHHHHHHHccCCChHhhHhc----CCcccchhhchHhHHHHHHHHHHH
Q 023815 208 CMSLAKALLKDLHDVDGDKEY----GIRTFSVMLGKERMIKELLNLFKN 252 (276)
Q Consensus 208 ~~~~~~~~~~~~~D~e~D~~a----G~~Tl~v~lG~~~a~~l~~~l~~~ 252 (276)
+...+-..+||+-|+|-|++. ++..-.=++.++.+..+...+.++
T Consensus 40 l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l~~~ 88 (341)
T PLN02776 40 LCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVGAA 88 (341)
T ss_pred HHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 334566789999999999874 344444455556666655554443
No 105
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=50.22 E-value=12 Score=32.03 Aligned_cols=41 Identities=37% Similarity=0.400 Sum_probs=32.2
Q ss_pred HHHHHHHHccCCChHhhH----------hcCCcccchhhchHhHHHHHHHH
Q 023815 209 MSLAKALLKDLHDVDGDK----------EYGIRTFSVMLGKERMIKELLNL 249 (276)
Q Consensus 209 ~~~~~~~~~~~~D~e~D~----------~aG~~Tl~v~lG~~~a~~l~~~l 249 (276)
+..+..+.+|++|+.+|. +.|+.|+|.....+.......-.
T Consensus 158 lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~~~~~~~~~ 208 (236)
T cd00867 158 LGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARERAAEYAEEA 208 (236)
T ss_pred HHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 456778999999998888 89999999999866555554443
No 106
>PRK10581 geranyltranstransferase; Provisional
Probab=42.99 E-value=23 Score=32.17 Aligned_cols=43 Identities=30% Similarity=0.467 Sum_probs=34.2
Q ss_pred HHHHHHHHccCCChH-----------hhHhcCCcccchhhchHhHHHHHHHHHH
Q 023815 209 MSLAKALLKDLHDVD-----------GDKEYGIRTFSVMLGKERMIKELLNLFK 251 (276)
Q Consensus 209 ~~~~~~~~~~~~D~e-----------~D~~aG~~Tl~v~lG~~~a~~l~~~l~~ 251 (276)
+..+..+..|+.|+. +|.+.|+.|+|+.+|.+.+...+--..-
T Consensus 215 lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~ 268 (299)
T PRK10581 215 IGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLID 268 (299)
T ss_pred HHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456778899999975 4567899999999999998877665544
No 107
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=37.98 E-value=3.2e+02 Score=24.95 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=15.6
Q ss_pred HhhcccchhhhhhcC-CCCccccCC
Q 023815 82 AINQLVDVKIDKINK-PDLPLASGD 105 (276)
Q Consensus 82 ~~Nd~~D~~~D~~~~-~~Rpl~~G~ 105 (276)
.+.+..|+|.|++.+ +.-|..-|.
T Consensus 190 iiYa~qD~e~D~~~Gl~Slpv~fG~ 214 (300)
T PRK12876 190 IIYAIQDLEFDRKEGLFSIPARFGE 214 (300)
T ss_pred HHHHHcCHhhHHHcCCccchHHHCc
Confidence 355588999999765 344544444
No 108
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=33.55 E-value=1.9e+02 Score=21.15 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=26.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhc
Q 023815 58 LTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKIN 95 (276)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~ 95 (276)
.+..+..++....++..+...|+.--|..+|...|++.
T Consensus 52 ~t~g~~~g~~~~~~~~~l~~~Yv~~An~~~D~l~~~i~ 89 (91)
T PF04341_consen 52 LTLGIVLGLGQIVFAWVLTWLYVRRANREFDPLARAIR 89 (91)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 44445555555556666777888889999999887753
No 109
>COG4125 Predicted membrane protein [Function unknown]
Probab=30.17 E-value=1.1e+02 Score=24.52 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=10.2
Q ss_pred HHHHhHhhcccchhhhhh
Q 023815 77 AIYMTAINQLVDVKIDKI 94 (276)
Q Consensus 77 ~~~~~~~Nd~~D~~~D~~ 94 (276)
...-.+.|..+|+-+-|.
T Consensus 54 m~WN~vyN~lFd~~~rr~ 71 (149)
T COG4125 54 MIWNFVYNLLFDRAERRM 71 (149)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445666677665554
No 110
>PF10507 DUF2453: Protein of unknown function (DUF2453); InterPro: IPR019537 The function of these transmembrane protein is not known.
Probab=25.08 E-value=1.9e+02 Score=22.38 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhHH
Q 023815 109 KTGVAITLTCAMMSLAMGIMIGSPPL 134 (276)
Q Consensus 109 ~~a~~~~~~~~~~g~~l~~~~~~~~~ 134 (276)
++.+....+--++|+.++..+|..++
T Consensus 81 ~~~r~a~~~G~~~Gv~iGClLGM~PL 106 (111)
T PF10507_consen 81 RSTRWASNLGRAIGVTIGCLLGMFPL 106 (111)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455566666666665443
No 111
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=24.06 E-value=34 Score=31.35 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHHHccCCChH-----------hhHhcCCcccchhhchH
Q 023815 209 MSLAKALLKDLHDVD-----------GDKEYGIRTFSVMLGKE 240 (276)
Q Consensus 209 ~~~~~~~~~~~~D~e-----------~D~~aG~~Tl~v~lG~~ 240 (276)
+..+..+.+|+.|+. +|.+.|+.|+|+.+..+
T Consensus 202 lG~aFQI~DDilD~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~ 244 (319)
T TIGR02748 202 VGMSYQITDDILDFVGTEEELGKPAGGDLLQGNVTLPVLYAME 244 (319)
T ss_pred HHHHHHHHHHHHHccCCHHhhCCChhhHHhCCCchHHHHHHhc
No 112
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=22.75 E-value=1.8e+02 Score=21.60 Aligned_cols=31 Identities=10% Similarity=0.026 Sum_probs=17.3
Q ss_pred hhhcCCCCccccCCCCHHHHHHHHHHHHHHHHHHH
Q 023815 92 DKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMG 126 (276)
Q Consensus 92 D~~~~~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~ 126 (276)
+++|++.|.+ -.+..|+ ..+.+.+++|++.+
T Consensus 7 ~~Ld~~~~i~---g~t~DE~-i~~~~~~~~Gi~~~ 37 (95)
T TIGR02762 7 KYLDEQPRIL---GLPLDEF-LPGATLFGIGILSG 37 (95)
T ss_pred CccCCCCeEE---EeeHHHH-HHHHHHHHHHHHHh
Confidence 4556655554 5677777 44444555555543
No 113
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=22.04 E-value=53 Score=28.91 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHccCCChHh-----------hHhcCCcccchhhchHhHH
Q 023815 205 VITCMSLAKALLKDLHDVDG-----------DKEYGIRTFSVMLGKERMI 243 (276)
Q Consensus 205 ~~~~~~~~~~~~~~~~D~e~-----------D~~aG~~Tl~v~lG~~~a~ 243 (276)
+..-+..+..+.+|+.|..+ |.+.|+.|+|+.++.+.+.
T Consensus 174 ~g~~lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~~~ 223 (260)
T PF00348_consen 174 FGRHLGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALERAR 223 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHhCH
No 114
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=21.71 E-value=1.2e+02 Score=19.66 Aligned_cols=17 Identities=12% Similarity=0.360 Sum_probs=13.2
Q ss_pred HHHhHhhcccchhhhhh
Q 023815 78 IYMTAINQLVDVKIDKI 94 (276)
Q Consensus 78 ~~~~~~Nd~~D~~~D~~ 94 (276)
.|..++|.+.|.++|-.
T Consensus 19 lyl~ald~~CDQg~~F~ 35 (47)
T PRK10299 19 LWAQVFNMMCDQDVQFF 35 (47)
T ss_pred HHHHHHHHHhcCCccce
Confidence 45567999999997754
No 115
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=20.81 E-value=4.8e+02 Score=21.44 Aligned_cols=17 Identities=6% Similarity=0.042 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhHhhccc
Q 023815 71 VPAALMAIYMTAINQLV 87 (276)
Q Consensus 71 ~~~~~~~~~~~~~Nd~~ 87 (276)
++.......++++++|.
T Consensus 35 la~~vA~a~Sma~GeYv 51 (169)
T TIGR00267 35 LGGGVANGMSNAFGAFT 51 (169)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555677899998
No 116
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=20.51 E-value=1.1e+02 Score=28.12 Aligned_cols=45 Identities=24% Similarity=0.136 Sum_probs=35.9
Q ss_pred HHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhhhh
Q 023815 212 AKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLED 257 (276)
Q Consensus 212 ~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~~~ 257 (276)
+..+..|+-| ++|.+.|++|....+|...+....-.++..++-.+
T Consensus 81 ~SLiHDDvmD-~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~~l 125 (322)
T COG0142 81 ASLIHDDLMD-DDDLRRGKPTVHAKFGEATAILAGDALLAAAFELL 125 (322)
T ss_pred HHHHHhhccc-CCCccCCCCCchhHhccHHHHHHHHHHHHHHHHHH
Confidence 4456677765 46779999999999999999999888888766544
Done!