Query 023815
Match_columns 276
No_of_seqs 201 out of 1387
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 13:15:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023815.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023815hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0g_A Farnesyl diphosphate sy 51.6 9.1 0.00031 33.5 3.0 45 209-253 208-263 (297)
2 3lsn_A Geranyltranstransferase 47.6 7.8 0.00027 34.1 2.0 46 209-254 215-271 (304)
3 3lom_A Geranyltranstransferase 45.9 8.2 0.00028 34.1 1.8 46 209-254 222-278 (313)
4 3ts7_A Geranyltranstransferase 45.6 7.8 0.00027 34.4 1.6 46 209-254 221-277 (324)
5 4f62_A Geranyltranstransferase 41.9 9.7 0.00033 33.7 1.6 44 209-252 214-268 (317)
6 3p8l_A Geranyltranstransferase 41.8 9.8 0.00034 33.4 1.7 43 209-251 218-271 (302)
7 3p8r_A Geranyltranstransferase 41.7 9.3 0.00032 33.5 1.5 45 209-253 221-276 (302)
8 3uca_A Geranyltranstransferase 38.0 12 0.00041 33.2 1.6 45 209-253 243-298 (324)
9 2h8o_A Geranyltranstransferase 37.5 9.5 0.00033 34.0 0.9 45 209-253 254-309 (335)
10 3llw_A Geranyltranstransferase 36.0 20 0.00067 31.6 2.7 44 209-252 222-274 (311)
11 1rqj_A Geranyltranstransferase 33.9 20 0.0007 31.2 2.4 44 209-252 215-269 (299)
12 2j1p_A Geranylgeranyl pyrophos 32.2 17 0.00057 31.7 1.6 42 209-253 225-266 (293)
13 1rtr_A Geranyltranstransferase 32.0 16 0.00055 31.9 1.4 46 209-254 210-266 (301)
14 3pde_A Farnesyl-diphosphate sy 31.9 27 0.00091 30.7 2.9 44 209-252 217-271 (309)
15 3kra_B Geranyl diphosphate syn 31.0 34 0.0012 29.3 3.4 45 211-255 74-118 (274)
16 3npk_A Geranyltranstransferase 20.6 45 0.0015 28.9 2.2 46 205-250 203-257 (291)
17 3oyr_A Trans-isoprenyl diphosp 20.2 40 0.0014 30.0 1.8 37 205-241 220-267 (345)
No 1
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=51.58 E-value=9.1 Score=33.50 Aligned_cols=45 Identities=29% Similarity=0.386 Sum_probs=28.3
Q ss_pred HHHHHHHHccCCChHh-----------hHhcCCcccchhhchHhHHHHHHHHHHHh
Q 023815 209 MSLAKALLKDLHDVDG-----------DKEYGIRTFSVMLGKERMIKELLNLFKNM 253 (276)
Q Consensus 209 ~~~~~~~~~~~~D~e~-----------D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~ 253 (276)
+..+..+..|+.|+.+ |.+.|+.|+|+.+|.+.++....-+.--+
T Consensus 208 lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A 263 (297)
T 3m0g_A 208 LGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEA 263 (297)
T ss_dssp HHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999865 66789999999999999988776665543
No 2
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=47.65 E-value=7.8 Score=34.07 Aligned_cols=46 Identities=24% Similarity=0.268 Sum_probs=31.5
Q ss_pred HHHHHHHHccCCChHh-----------hHhcCCcccchhhchHhHHHHHHHHHHHhh
Q 023815 209 MSLAKALLKDLHDVDG-----------DKEYGIRTFSVMLGKERMIKELLNLFKNMD 254 (276)
Q Consensus 209 ~~~~~~~~~~~~D~e~-----------D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~ 254 (276)
+..+..+..|+.|+.+ |.+.|+.|+|+.+|.+.++....-+.--+.
T Consensus 215 lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~ 271 (304)
T 3lsn_A 215 IGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQAL 271 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888865 667899999999999999888777655443
No 3
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=45.86 E-value=8.2 Score=34.08 Aligned_cols=46 Identities=17% Similarity=0.280 Sum_probs=31.8
Q ss_pred HHHHHHHHccCCChHh-----------hHhcCCcccchhhchHhHHHHHHHHHHHhh
Q 023815 209 MSLAKALLKDLHDVDG-----------DKEYGIRTFSVMLGKERMIKELLNLFKNMD 254 (276)
Q Consensus 209 ~~~~~~~~~~~~D~e~-----------D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~ 254 (276)
+..+..+..|+.|+.+ |.+.|+.|+|+.+|.+.++....-+.--+.
T Consensus 222 lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~ 278 (313)
T 3lom_A 222 IGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIAM 278 (313)
T ss_dssp HHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888754 668899999999999999888776665443
No 4
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=45.64 E-value=7.8 Score=34.43 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=31.4
Q ss_pred HHHHHHHHccCCChHh-----------hHhcCCcccchhhchHhHHHHHHHHHHHhh
Q 023815 209 MSLAKALLKDLHDVDG-----------DKEYGIRTFSVMLGKERMIKELLNLFKNMD 254 (276)
Q Consensus 209 ~~~~~~~~~~~~D~e~-----------D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~ 254 (276)
+..+..+..|+.|+.+ |.+.|+.|+|+.+|.+.++....-..--+.
T Consensus 221 lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~ 277 (324)
T 3ts7_A 221 IGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAAL 277 (324)
T ss_dssp HHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788877754 678899999999999999988776665443
No 5
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=41.89 E-value=9.7 Score=33.70 Aligned_cols=44 Identities=23% Similarity=0.343 Sum_probs=30.6
Q ss_pred HHHHHHHHccCCChH-----------hhHhcCCcccchhhchHhHHHHHHHHHHH
Q 023815 209 MSLAKALLKDLHDVD-----------GDKEYGIRTFSVMLGKERMIKELLNLFKN 252 (276)
Q Consensus 209 ~~~~~~~~~~~~D~e-----------~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~ 252 (276)
+..+..+..|+.|+. +|.+.|+.|+|+.+|.+.++..+.-..--
T Consensus 214 lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~ 268 (317)
T 4f62_A 214 IGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQ 268 (317)
T ss_dssp HHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 345667788887774 46778999999999999998877766543
No 6
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=41.76 E-value=9.8 Score=33.39 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=27.2
Q ss_pred HHHHHHHHccCCChH-----------hhHhcCCcccchhhchHhHHHHHHHHHH
Q 023815 209 MSLAKALLKDLHDVD-----------GDKEYGIRTFSVMLGKERMIKELLNLFK 251 (276)
Q Consensus 209 ~~~~~~~~~~~~D~e-----------~D~~aG~~Tl~v~lG~~~a~~l~~~l~~ 251 (276)
+..+..+..|+.|+. +|.+.|+.|+|+.+|.++++....-+.-
T Consensus 218 lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~ 271 (302)
T 3p8l_A 218 YGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLA 271 (302)
T ss_dssp HHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 345667777777764 5788899999999999999877665543
No 7
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=41.74 E-value=9.3 Score=33.52 Aligned_cols=45 Identities=24% Similarity=0.377 Sum_probs=29.8
Q ss_pred HHHHHHHHccCCChH-----------hhHhcCCcccchhhchHhHHHHHHHHHHHh
Q 023815 209 MSLAKALLKDLHDVD-----------GDKEYGIRTFSVMLGKERMIKELLNLFKNM 253 (276)
Q Consensus 209 ~~~~~~~~~~~~D~e-----------~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~ 253 (276)
+..+..+..|+.|+. +|.+.|+.|+|+.+|.+.++..+.-..--|
T Consensus 221 lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A 276 (302)
T 3p8r_A 221 VGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEA 276 (302)
T ss_dssp HHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777764 467789999999999999988877665543
No 8
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=38.02 E-value=12 Score=33.18 Aligned_cols=45 Identities=24% Similarity=0.354 Sum_probs=28.0
Q ss_pred HHHHHHHHccCCChH-----------hhHhcCCcccchhhchHhHHHHHHHHHHHh
Q 023815 209 MSLAKALLKDLHDVD-----------GDKEYGIRTFSVMLGKERMIKELLNLFKNM 253 (276)
Q Consensus 209 ~~~~~~~~~~~~D~e-----------~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~ 253 (276)
+..+..+..|+.|+. +|.+.|+.|+|+.+|.++++....-+.--|
T Consensus 243 lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A 298 (324)
T 3uca_A 243 LGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEEC 298 (324)
T ss_dssp HHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777877774 477889999999999999988777665443
No 9
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=37.52 E-value=9.5 Score=34.00 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=30.0
Q ss_pred HHHHHHHHccCCChHh-----------hHhcCCcccchhhchHhHHHHHHHHHHHh
Q 023815 209 MSLAKALLKDLHDVDG-----------DKEYGIRTFSVMLGKERMIKELLNLFKNM 253 (276)
Q Consensus 209 ~~~~~~~~~~~~D~e~-----------D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~ 253 (276)
+..+..+..|+.|+.+ |.+.|+.|+|+.+|.+.++....-+.--+
T Consensus 254 lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A 309 (335)
T 2h8o_A 254 IGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEA 309 (335)
T ss_dssp HHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788777754 66789999999999998888777665544
No 10
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=35.97 E-value=20 Score=31.56 Aligned_cols=44 Identities=30% Similarity=0.370 Sum_probs=32.5
Q ss_pred HHHHHHHHccCCChHhhH---------hcCCcccchhhchHhHHHHHHHHHHH
Q 023815 209 MSLAKALLKDLHDVDGDK---------EYGIRTFSVMLGKERMIKELLNLFKN 252 (276)
Q Consensus 209 ~~~~~~~~~~~~D~e~D~---------~aG~~Tl~v~lG~~~a~~l~~~l~~~ 252 (276)
+..+..+..|+.|+.+|. +.|+.|+|+.+|.+++.....-++--
T Consensus 222 lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~~~~~ 274 (311)
T 3llw_A 222 MGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQTLKTE 274 (311)
T ss_dssp HHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 456678889999998775 57999999999999998776655543
No 11
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=33.95 E-value=20 Score=31.17 Aligned_cols=44 Identities=32% Similarity=0.519 Sum_probs=32.5
Q ss_pred HHHHHHHHccCCChHh-----------hHhcCCcccchhhchHhHHHHHHHHHHH
Q 023815 209 MSLAKALLKDLHDVDG-----------DKEYGIRTFSVMLGKERMIKELLNLFKN 252 (276)
Q Consensus 209 ~~~~~~~~~~~~D~e~-----------D~~aG~~Tl~v~lG~~~a~~l~~~l~~~ 252 (276)
+..+..+..|+.|+.+ |.+.|+.|+|+.+|.+.+.....-..--
T Consensus 215 lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~ 269 (299)
T 1rqj_A 215 IGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDD 269 (299)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788777754 5677999999999999888766655443
No 12
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=32.16 E-value=17 Score=31.65 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=33.4
Q ss_pred HHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHh
Q 023815 209 MSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNM 253 (276)
Q Consensus 209 ~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~ 253 (276)
+..+..+..|+.|+.+|. +.|+|+.+|.+.++..+.-+.--+
T Consensus 225 lG~aFQI~DDiLD~~~~~---K~T~p~l~gle~a~~~a~~~~~~A 266 (293)
T 2j1p_A 225 IGLLFQVVDDILDVTKSS---KLTYPKLMGLEKSREFAEKLNTEA 266 (293)
T ss_dssp HHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCc---cccHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999998 899999999999998877765543
No 13
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=32.04 E-value=16 Score=31.91 Aligned_cols=46 Identities=24% Similarity=0.264 Sum_probs=30.7
Q ss_pred HHHHHHHHccCCChHh-----------hHhcCCcccchhhchHhHHHHHHHHHHHhh
Q 023815 209 MSLAKALLKDLHDVDG-----------DKEYGIRTFSVMLGKERMIKELLNLFKNMD 254 (276)
Q Consensus 209 ~~~~~~~~~~~~D~e~-----------D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~ 254 (276)
+..+..+..|+.|+.+ |.+.|+.|+|+.+|.+.++....-..--+.
T Consensus 210 lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~ 266 (301)
T 1rtr_A 210 LGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAV 266 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888888754 567799999999999998887776655443
No 14
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=31.94 E-value=27 Score=30.71 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=32.0
Q ss_pred HHHHHHHHccCCChH-----------hhHhcCCcccchhhchHhHHHHHHHHHHH
Q 023815 209 MSLAKALLKDLHDVD-----------GDKEYGIRTFSVMLGKERMIKELLNLFKN 252 (276)
Q Consensus 209 ~~~~~~~~~~~~D~e-----------~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~ 252 (276)
+..+..+..|+.|+. +|.+.|+.|+|+.+|.+++.....-++--
T Consensus 217 lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~ 271 (309)
T 3pde_A 217 FGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHS 271 (309)
T ss_dssp HHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHH
Confidence 345667888888874 47788999999999999988766555443
No 15
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=30.96 E-value=34 Score=29.33 Aligned_cols=45 Identities=11% Similarity=-0.059 Sum_probs=34.9
Q ss_pred HHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815 211 LAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 255 (276)
Q Consensus 211 ~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~ 255 (276)
.+..+..|+++.++|.+.|++|.=.++|...+....-.++..++-
T Consensus 74 ~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~ 118 (274)
T 3kra_B 74 AAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFE 118 (274)
T ss_dssp HHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHH
Confidence 345677899844456679999999999999998877777766654
No 16
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=20.65 E-value=45 Score=28.90 Aligned_cols=46 Identities=28% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHccCCChHhhHh---------cCCcccchhhchHhHHHHHHHHH
Q 023815 205 VITCMSLAKALLKDLHDVDGDKE---------YGIRTFSVMLGKERMIKELLNLF 250 (276)
Q Consensus 205 ~~~~~~~~~~~~~~~~D~e~D~~---------aG~~Tl~v~lG~~~a~~l~~~l~ 250 (276)
+.--+..+..+..|+.|+.+|.. .|+.|+|+.+|.+++.....-++
T Consensus 203 ~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d~gK~T~p~l~~l~~a~~~~~~~~ 257 (291)
T 3npk_A 203 LGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLL 257 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHC----------------CCHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChHHHCCccchhcCcchHHHHHHHHHhHHHHHHHH
No 17
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=20.22 E-value=40 Score=29.98 Aligned_cols=37 Identities=30% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHccCCChHh-----------hHhcCCcccchhhchHh
Q 023815 205 VITCMSLAKALLKDLHDVDG-----------DKEYGIRTFSVMLGKER 241 (276)
Q Consensus 205 ~~~~~~~~~~~~~~~~D~e~-----------D~~aG~~Tl~v~lG~~~ 241 (276)
+.-.+..+..+..|+.|+.+ |.+.|+.|+|+.++.+.
T Consensus 220 ~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK~TlP~i~al~~ 267 (345)
T 3oyr_A 220 YGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAIAR 267 (345)
T ss_dssp HHHHHHHHHHHHHHHTTC-------------------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChhhcCCCccchhhcCchHHHHHHHHHh
Done!