BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023816
(276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With
Mg2+
Length = 206
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 24 PSDTEEVH---VLAVDDSFVDRKVIE-RLLTISSCKVTAVDSGRRALQFL--GLDEEQSI 77
PSD E + VL VDD+F+ RKV +L + +V DSG+ AL+ + GL + +
Sbjct: 53 PSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQ 112
Query: 78 NGFDGLKVDLIITDYCMPGMTGYELLKKIK 107
D L D I D MP M GYE ++I+
Sbjct: 113 GSVDKLPFDYIFMDCQMPEMDGYEATREIR 142
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 77/193 (39%), Gaps = 68/193 (35%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L V+DS + ++ +L + + V +GR A++FL L + DLII+D
Sbjct: 10 ILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLT-----------RPDLIISD 58
Query: 92 YCMPGMTGYELLKKIKVTTPFNFLYSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQD 151
MP M GY L + +K
Sbjct: 59 VLMPEMDGYALCRWLK-------------------------------------------G 75
Query: 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK-----------LSDVKRIKDYL 200
LR IPV++++ + + R LE GA+DFI KP K LS VKR ++
Sbjct: 76 QPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKRTEERY 135
Query: 201 TRD---VNLGNEG 210
+R+ + GNEG
Sbjct: 136 SRESITLAFGNEG 148
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 60/157 (38%), Gaps = 52/157 (33%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L DD +R V++RLL + KV V+ EQ ++ D +I D
Sbjct: 17 MLVADDHEANRMVLQRLLEKAGHKVLCVNGA-----------EQVLDAMAEEDYDAVIVD 65
Query: 92 YCMPGMTGYELLKKIKVTTPFNFLYSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQD 151
MPGM G ++LK+++V
Sbjct: 66 LHMPGMNGLDMLKQLRVM-----------------------------------------Q 84
Query: 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188
+S +R PVV++S++ I C + GA F+ KPV
Sbjct: 85 ASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPV 121
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 54/159 (33%)
Query: 30 VHVLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLI 88
+ +L VDDS R++I+ L+ + V + G A + L + + + +
Sbjct: 6 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKV----------L 55
Query: 89 ITDYCMPGMTGYELLKKIKVTTPFNFLYSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 148
ITD+ MP M G +L+KK++ + F
Sbjct: 56 ITDWNMPEMNGLDLVKKVRSDSRF------------------------------------ 79
Query: 149 EQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187
+EIP++++++E A + L+ G ++IVKP
Sbjct: 80 -------KEIPIIMITAEGGKAEVITALKAGVNNYIVKP 111
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 54/159 (33%)
Query: 30 VHVLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLI 88
+ +L VDDS R++I+ L+ + V + G A + L + + + +
Sbjct: 6 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKV----------L 55
Query: 89 ITDYCMPGMTGYELLKKIKVTTPFNFLYSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 148
ITD+ MP M G +L+KK++
Sbjct: 56 ITDWNMPEMNGLDLVKKVR----------------------------------------- 74
Query: 149 EQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187
S +EIP++++++E A + L+ G ++IVKP
Sbjct: 75 --SDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKP 111
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
V VDD R V+ER L + T ++G L L D++++D
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP-----------DVLLSD 54
Query: 92 YCMPGMTGYELLKKIKVTTPF 112
MPGM G LLK+IK P
Sbjct: 55 IRMPGMDGLALLKQIKQRHPM 75
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
V VDD R V+ER L + T ++G L L D++++D
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP-----------DVLLSD 54
Query: 92 YCMPGMTGYELLKKIKVTTPF 112
MPGM G LLK+IK P
Sbjct: 55 IRMPGMDGLALLKQIKQRHPM 75
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
V VDD R V+ER L + T ++G L L D++++D
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP-----------DVLLSD 54
Query: 92 YCMPGMTGYELLKKIKVTTPF 112
MPGM G LLK+IK P
Sbjct: 55 IRMPGMDGLALLKQIKQRHPM 75
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 11/83 (13%)
Query: 25 SDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLK 84
SD +++ +L VDD ++R+++ L + + G AL L +
Sbjct: 4 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH----------- 52
Query: 85 VDLIITDYCMPGMTGYELLKKIK 107
+D++++D MP M GY L ++I+
Sbjct: 53 IDIVLSDVNMPNMDGYRLTQRIR 75
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL VDDS V RK++ L +V ++G+ AL+ L DLI+ D
Sbjct: 5 VLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS-----------EFTPDLIVLD 53
Query: 92 YCMPGMTGYELLKKIK 107
MP M G+ +LKK++
Sbjct: 54 IMMPVMDGFTVLKKLQ 69
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 59/159 (37%), Gaps = 58/159 (36%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDD + +++E LT +V+ G AL D D+I+ D
Sbjct: 5 ILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLP-----------DIILLD 53
Query: 92 YCMPGMTGYELLKKIKVTTPFNFLYSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQD 151
MPGM G+ + +K+K D
Sbjct: 54 VMMPGMDGFTVCRKLK-------------------------------------------D 70
Query: 152 SSALREIPVVIMSSENILARIDRC--LEDGAEDFIVKPV 188
R IPVV++++ + R DR LE GA DF+ KP+
Sbjct: 71 DPTTRHIPVVLITALD--GRGDRIQGLESGASDFLTKPI 107
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 14 SDEIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDE 73
++ + D + SD +++ +L VDD ++R+++ L + + G AL L +
Sbjct: 114 ANALPSTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH 173
Query: 74 EQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107
+D++++D MP M GY L ++I+
Sbjct: 174 -----------IDIVLSDVNMPNMDGYRLTQRIR 196
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 59/159 (37%), Gaps = 58/159 (36%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDD + +++E LT +V+ G AL D D+I+ D
Sbjct: 4 ILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLP-----------DIILLD 52
Query: 92 YCMPGMTGYELLKKIKVTTPFNFLYSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQD 151
MPGM G+ + +K+K D
Sbjct: 53 VMMPGMDGFTVCRKLK-------------------------------------------D 69
Query: 152 SSALREIPVVIMSSENILARIDRC--LEDGAEDFIVKPV 188
R IPVV++++ + R DR LE GA DF+ KP+
Sbjct: 70 DPTTRHIPVVLITALD--GRGDRIQGLESGASDFLTKPI 106
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene
Receptor Of Arabidopsis Thaliana
Length = 136
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 12/76 (15%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL +D++ V R V + LL C+VT V S L+ + + + ++ D
Sbjct: 10 VLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHEHK------------VVFMD 57
Query: 92 YCMPGMTGYELLKKIK 107
CMPG+ Y++ +I
Sbjct: 58 VCMPGVENYQIALRIH 73
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 61/169 (36%), Gaps = 55/169 (32%)
Query: 27 TEEVHVLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKV 85
+ + +L VDD R++++ LL + D G AL L +
Sbjct: 10 NKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGD-----------F 58
Query: 86 DLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTXXXXXXXXXXXXXXXXXXXXXXXXXXX 145
D ++TD+ MPGM G +LLK I+
Sbjct: 59 DFVVTDWNMPGMQGIDLLKNIRA------------------------------------- 81
Query: 146 XXXEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVK 194
L+ +PV+++++E +I + G +IVKP + +K
Sbjct: 82 ------DEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLK 124
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 67/169 (39%), Gaps = 60/169 (35%)
Query: 31 HVLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+L V+D V R +++ + + + V A D G AL+ LG G DL+I
Sbjct: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAAD-GVDALELLG-----------GFTPDLMI 56
Query: 90 TDYCMPGMTGYELLKKIKVTTPFNFLYSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE 149
D MP M G +LL+ I+
Sbjct: 57 CDIAMPRMNGLKLLEHIR----------------------------------------NR 76
Query: 150 QDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKD 198
D + PV+++S+ +A I + L G ED ++KPVK D+ R+++
Sbjct: 77 GDQT-----PVLVISATENMADIAKALRLGVEDVLLKPVK--DLNRLRE 118
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 44/132 (33%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTXXXXXXXXXXXXX 131
D + ++N + DLI+ D+ +PG +G + +K +K
Sbjct: 34 DYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLK------------------------ 69
Query: 132 XXXXXXXXXXXXXXXXXEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLS 191
S R+IPVV++++ R LE GA+D+I KP
Sbjct: 70 -------------------RESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPK 110
Query: 192 D-VKRIKDYLTR 202
+ V RIK + R
Sbjct: 111 ELVARIKAVMRR 122
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 44/132 (33%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTXXXXXXXXXXXXX 131
D + ++N + DLI+ D+ +PG +G + +K +K
Sbjct: 34 DYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLK------------------------ 69
Query: 132 XXXXXXXXXXXXXXXXXEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLS 191
S R+IPVV++++ R LE GA+D+I KP
Sbjct: 70 -------------------RESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPK 110
Query: 192 D-VKRIKDYLTR 202
+ V RIK + R
Sbjct: 111 ELVARIKAVMRR 122
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 54/159 (33%)
Query: 30 VHVLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLI 88
+ +L VDDS R++I+ L+ + V + G A + L + + + +
Sbjct: 6 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKV----------L 55
Query: 89 ITDYCMPGMTGYELLKKIKVTTPFNFLYSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 148
IT + MP M G +L+KK++
Sbjct: 56 ITAWNMPEMNGLDLVKKVR----------------------------------------- 74
Query: 149 EQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187
S +EIP++++++E A + L+ G ++IVKP
Sbjct: 75 --SDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKP 111
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 4 KELKFLVVDDGGTGRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 49
Query: 84 KVDLIITDYCMPGMTGYELLKKIKV 108
+I+D+ MP M G ELLK I+
Sbjct: 50 GYGFVISDWNMPNMDGLELLKTIRA 74
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 57/156 (36%), Gaps = 56/156 (35%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
V +DD RK +++ L ++ V++ S AL L D F G+ +I+D
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSAD-------FAGI----VISD 54
Query: 92 YCMPGMTGYELLKKIKVTTPFNFLYSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQD 151
MPGM G L +KI P
Sbjct: 55 IRMPGMDGLALFRKILALDP---------------------------------------- 74
Query: 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187
++P+++++ + + ++DGA DFI KP
Sbjct: 75 -----DLPMILVTGHGDIPMAVQAIQDGAYDFIAKP 105
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 57/156 (36%), Gaps = 56/156 (35%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
V +DD RK +++ L ++ V++ S AL L D F G+ +I+D
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSAD-------FAGI----VISD 54
Query: 92 YCMPGMTGYELLKKIKVTTPFNFLYSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQD 151
MPGM G L +KI P
Sbjct: 55 IRMPGMDGLALFRKILALDP---------------------------------------- 74
Query: 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187
++P+++++ + + ++DGA DFI KP
Sbjct: 75 -----DLPMILVTGHGDIPMAVQAIQDGAYDFIAKP 105
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 58/161 (36%), Gaps = 55/161 (34%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVD 86
+E+ L VDD R+++ LL + V + G AL L GF
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL------QAGGFG----- 52
Query: 87 LIITDYCMPGMTGYELLKKIKVTTPFNFLYSTXXXXXXXXXXXXXXXXXXXXXXXXXXXX 146
II+D+ MP M G ELLK I+
Sbjct: 53 FIISDWNMPNMDGLELLKTIRA-------------------------------------- 74
Query: 147 XXEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187
SA+ +PV+++++E I + GA ++VKP
Sbjct: 75 -----DSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 58/161 (36%), Gaps = 55/161 (34%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVD 86
+E+ L VDD R+++ LL + V + G AL L GF
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL------QAGGFG----- 51
Query: 87 LIITDYCMPGMTGYELLKKIKVTTPFNFLYSTXXXXXXXXXXXXXXXXXXXXXXXXXXXX 146
II+D+ MP M G ELLK I+
Sbjct: 52 FIISDWNMPNMDGLELLKTIRA-------------------------------------- 73
Query: 147 XXEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187
SA+ +PV+++++E I + GA ++VKP
Sbjct: 74 -----DSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 51/121 (42%)
Query: 75 QSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTXXXXXXXXXX 128
Q++NG GL++ DL+I D P + G EL+++I+ T
Sbjct: 34 QALNGLQGLQIFESEQPDLVICDLRXPQIDGLELIRRIRQTA------------------ 75
Query: 129 XXXXXXXXXXXXXXXXXXXXEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188
E P++++S +++ L GA D+++KP+
Sbjct: 76 ---------------------------SETPIIVLSGAGVMSDAVEALRLGAADYLIKPL 108
Query: 189 K 189
+
Sbjct: 109 E 109
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
V VDD R V+ER L + T ++G L L D++++
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP-----------DVLLSX 54
Query: 92 YCMPGMTGYELLKKIKVTTPF 112
MPGM G LLK+IK P
Sbjct: 55 IRMPGMDGLALLKQIKQRHPM 75
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 34.3 bits (77), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 18/84 (21%)
Query: 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGLK 84
E+ L VDD+ R+++ LL + L F ++E + ++N
Sbjct: 1 ELKFLVVDDNSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAGG 46
Query: 85 VDLIITDYCMPGMTGYELLKKIKV 108
+I+D+ MP M G ELLK I+
Sbjct: 47 YGFVISDWNMPNMDGLELLKTIRA 70
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 33.9 bits (76), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDESTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKV 108
+I+D+ MP M G ELLK I+
Sbjct: 49 GYGFVISDWMMPNMDGLELLKTIRA 73
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 5 KELKFLVVDDFSTGRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 50
Query: 84 KVDLIITDYCMPGMTGYELLKKIKV 108
+I+D+ MP M G ELLK I+
Sbjct: 51 GYGFVISDWNMPNMDGLELLKTIRA 75
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 18/84 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDESTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIK 107
+I+D+ MP M G ELLK I+
Sbjct: 49 GYGFVISDWMMPNMDGLELLKTIR 72
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL VDDS V RK++ L +V ++G+ AL+ L DLI+
Sbjct: 5 VLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS-----------EFTPDLIVLX 53
Query: 92 YCMPGMTGYELLKKIK 107
MP M G+ +LKK++
Sbjct: 54 IMMPVMDGFTVLKKLQ 69
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDESTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKV 108
+I+D+ MP M G ELLK I+
Sbjct: 49 GYGFVISDWNMPNMDGLELLKTIRA 73
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 44/132 (33%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTXXXXXXXXXXXXX 131
D + ++N + DLI+ ++ +PG +G + +K +K
Sbjct: 34 DYDSAVNQLNEPWPDLILLEWMLPGGSGIQFIKHLK------------------------ 69
Query: 132 XXXXXXXXXXXXXXXXXEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLS 191
S R+IPVV++++ R LE GA+D+I KP
Sbjct: 70 -------------------RESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPK 110
Query: 192 D-VKRIKDYLTR 202
+ V RIK + R
Sbjct: 111 ELVARIKAVMRR 122
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L +DD + I+ LL I +V S L+ ++ N +D++ITD
Sbjct: 6 ILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIF----TENCNS-----IDVVITD 56
Query: 92 YCMPGMTGYELLKKIKVTTPF 112
MP ++G ++L++IK TP
Sbjct: 57 MKMPKLSGMDILREIKKITPH 77
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDQSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKV 108
+I+D+ MP M G ELLK I+
Sbjct: 49 GYGFVISDWKMPNMDGLELLKTIRA 73
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 58/164 (35%), Gaps = 61/164 (37%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTXXXXXXXXXXXXXXXXXXXXXXXXX 143
II D+ MP M G ELLK I+
Sbjct: 49 GFGFIICDWNMPNMDGLELLKTIRA----------------------------------- 73
Query: 144 XXXXXEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187
SA+ +PV+++++E I + GA ++VKP
Sbjct: 74 --------DSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDESTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKV 108
+I+D+ MP M G ELLK I+
Sbjct: 49 GYGFVISDWRMPNMDGLELLKTIRA 73
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 51/121 (42%)
Query: 75 QSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTXXXXXXXXXX 128
Q++NG GL++ DL+I D P + G EL+++I+ T
Sbjct: 34 QALNGLQGLQIFESEQPDLVICDLRXPQIDGLELIRRIRQTA------------------ 75
Query: 129 XXXXXXXXXXXXXXXXXXXXEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188
E P++++S + + L GA D+++KP+
Sbjct: 76 ---------------------------SETPIIVLSGAGVXSDAVEALRLGAADYLIKPL 108
Query: 189 K 189
+
Sbjct: 109 E 109
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 49
Query: 84 KVDLIITDYCMPGMTGYELLKKIKV 108
+I+D+ MP M G ELLK I+
Sbjct: 50 GYGFVISDWNMPNMDGLELLKTIRA 74
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 18/92 (19%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKVTTPFNFL 115
+I+D+ MP M G ELLK I+ + L
Sbjct: 49 GYGFVISDWNMPNMDGLELLKTIRAXXAMSAL 80
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKV 108
+I+D+ MP M G ELLK I+
Sbjct: 49 GYGFVISDWNMPNMDGLELLKTIRA 73
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 58/164 (35%), Gaps = 61/164 (37%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 49
Query: 84 KVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTXXXXXXXXXXXXXXXXXXXXXXXXX 143
+I+D+ MP M G ELLK I+
Sbjct: 50 GYGFVISDWNMPNMDGLELLKTIRA----------------------------------- 74
Query: 144 XXXXXEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187
A+ +PV++++SE I + GA ++VKP
Sbjct: 75 --------DGAMSALPVLMVTSEAKKENIIAAAQAGASGYVVKP 110
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 70 GLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKV 108
G Q+ NG L + DL++ D +PGM G E+LK++KV
Sbjct: 27 GYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKV 71
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKV 108
+I+D+ MP M G ELLK I+
Sbjct: 49 GYGFVISDWNMPNMDGLELLKTIRA 73
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 70 GLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKV 108
G Q+ NG L + DL++ D +PGM G E+LK++KV
Sbjct: 25 GYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKV 69
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 49
Query: 84 KVDLIITDYCMPGMTGYELLKKIKV 108
+I+D+ MP M G ELLK I+
Sbjct: 50 GYGFVISDWNMPNMDGLELLKTIRA 74
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKV 108
+I+D+ MP M G ELLK I+
Sbjct: 49 GYGFVISDWNMPNMDGLELLKTIRA 73
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 49
Query: 84 KVDLIITDYCMPGMTGYELLKKIKV 108
+I+D+ MP M G ELLK I+
Sbjct: 50 GYGFVISDWNMPNMDGLELLKTIRA 74
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 70 GLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKV 108
G Q+ NG L + DL++ D +PGM G E+LK++KV
Sbjct: 27 GYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKV 71
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 18/84 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIK 107
+I+D+ MP M G ELLK I+
Sbjct: 49 GYGFVISDWNMPNMDGLELLKTIR 72
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 70 GLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKV 108
G Q+ NG L + DL++ D +PGM G E+LK++KV
Sbjct: 27 GYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKV 71
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 49
Query: 84 KVDLIITDYCMPGMTGYELLKKIKV 108
+I+D+ MP M G ELLK I+
Sbjct: 50 GYGFVISDWNMPNMDGLELLKTIRA 74
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKV 108
+I+D+ MP M G ELLK I+
Sbjct: 49 GYGFVISDWNMPNMDGLELLKTIRA 73
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 49
Query: 84 KVDLIITDYCMPGMTGYELLKKIKV 108
+I+D+ MP M G ELLK I+
Sbjct: 50 GYGFVISDWNMPNMDGLELLKTIRA 74
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 70 GLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKV 108
G Q+ NG L + DL++ D +PGM G E+LK++KV
Sbjct: 27 GYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKV 71
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKV 108
+I+D+ MP M G ELLK I+
Sbjct: 49 GYGFVISDWNMPNMDGLELLKTIRA 73
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 30/133 (22%)
Query: 75 QSINGFDGLKVDLIITDYCMP---GMTGYELLKKIKVTTPFNFLYSTXXXXXXXXXXXXX 131
++I + DL++ D CMP G+ L++ + T +N
Sbjct: 43 EAITAINSSSYDLVLMDVCMPVLDGLKATRLIRSYEETGNWN------------------ 84
Query: 132 XXXXXXXXXXXXXXXXXEQDSSALR---EIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188
E + +R +P++ M++ + + C +G + FI KPV
Sbjct: 85 -----AAIEAGVDISTSENEQVCMRPTNRLPIIAMTANTLAESSEECYANGMDSFISKPV 139
Query: 189 KLSDVKR-IKDYL 200
L ++ ++ YL
Sbjct: 140 TLQKLRECLQQYL 152
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 18/84 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 49
Query: 84 KVDLIITDYCMPGMTGYELLKKIK 107
+I+D+ MP M G ELLK I+
Sbjct: 50 GYGFVISDWNMPNMDGLELLKTIR 73
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 70 GLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKV 108
G Q+ NG L + DL++ D +PGM G E+LK++KV
Sbjct: 29 GYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKV 73
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 18/84 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIK 107
+I+D+ MP M G ELLK I+
Sbjct: 49 GYGFVISDWNMPNMDGLELLKTIR 72
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 18/84 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 49
Query: 84 KVDLIITDYCMPGMTGYELLKKIK 107
+I+D+ MP M G ELLK I+
Sbjct: 50 GYGFVISDWNMPNMDGLELLKTIR 73
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 18/84 (21%)
Query: 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGLK 84
E+ L VDD+ R++ LL + L F ++E + ++N
Sbjct: 1 ELKFLVVDDNSTMRRITRNLL--------------KELGFNNVEEAEDGVDALNKLQAGG 46
Query: 85 VDLIITDYCMPGMTGYELLKKIKV 108
+I+D+ MP M G ELLK I+
Sbjct: 47 YGFVISDWNMPNMDGLELLKTIRA 70
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 49
Query: 84 KVDLIITDYCMPGMTGYELLKKIKV 108
+I+D+ MP M G ELLK I+
Sbjct: 50 GYGFVISDWRMPNMDGLELLKTIRA 74
>pdb|3B2N|A Chain A, Crystal Structure Of Dna-binding Response Regulator, Luxr
Family, From Staphylococcus Aureus
Length = 133
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 6/36 (16%)
Query: 78 NGFDGLKV------DLIITDYCMPGMTGYELLKKIK 107
NG D +K+ +++I D MPGMTG E+L +I+
Sbjct: 37 NGLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIR 72
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 7 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 52
Query: 84 KVDLIITDYCMPGMTGYELLKKIKV 108
+I+D+ MP M G ELLK I+
Sbjct: 53 GYGFVISDWDMPNMDGLELLKTIRA 77
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 7 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 52
Query: 84 KVDLIITDYCMPGMTGYELLKKIKV 108
+I+D+ MP M G ELLK I+
Sbjct: 53 GYGFVISDWDMPNMDGLELLKTIRA 77
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 7 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 52
Query: 84 KVDLIITDYCMPGMTGYELLKKIKV 108
+I+D+ MP M G ELLK I+
Sbjct: 53 GYGFVISDWDMPNMDGLELLKTIRA 77
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 7 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 52
Query: 84 KVDLIITDYCMPGMTGYELLKKIKV 108
+I+D+ MP M G ELLK I+
Sbjct: 53 GYGFVISDWDMPNMDGLELLKTIRA 77
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
Length = 122
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
Query: 171 RIDRC--LEDGAEDFIVKPVKLSD-VKRIKDYLTR 202
RIDR LE GA+D++ KP++L + V R+K+ L R
Sbjct: 85 RIDRIVGLEXGADDYVTKPLELRELVVRVKNLLWR 119
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 63 RRALQFLGLDE-EQSINGFDGLK------VDLIITDYCMPGMTGYELLKKIKV 108
R L+ LG + E++ +G D L +I+D+ MP M G ELLK I+
Sbjct: 23 RNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRA 75
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD-VKRIKDYLTR 202
++PV ++S+ + + LE GA+D++VKP L++ V R+K L R
Sbjct: 79 DVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 125
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 63 RRALQFLGLDE-EQSINGFDGLK------VDLIITDYCMPGMTGYELLKKIKV 108
R L+ LG + E++ +G D L +I+D+ MP M G ELLK I+
Sbjct: 21 RNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRA 73
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 63 RRALQFLGLDE-EQSINGFDGLK------VDLIITDYCMPGMTGYELLKKIKV 108
R L+ LG + E++ +G D L +I+D+ MP M G ELLK I+
Sbjct: 20 RNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRA 72
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 70 GLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKV 108
G Q+ NG L + DL++ D +PGM G E+ K++KV
Sbjct: 27 GYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEIAKRMKV 71
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
Length = 152
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 150 QDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD 192
+++ R PVVI+++ + I RC + GA +I KPV +
Sbjct: 82 KENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYEN 124
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 70 GLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKV 108
G Q+ NG L + DL++ +PGM G E+LK++KV
Sbjct: 27 GYQTFQAANGLQALDIVTKERPDLVLLXMKIPGMDGIEILKRMKV 71
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 18/85 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKV 108
+I+ + MP M G ELLK I+
Sbjct: 49 GYGFVISAWNMPNMDGLELLKTIRA 73
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 18/84 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIK 107
+I+ + MP M G ELLK I+
Sbjct: 49 GYGFVISXWNMPNMDGLELLKTIR 72
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 18/84 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 49
Query: 84 KVDLIITDYCMPGMTGYELLKKIK 107
+I+ + MP M G ELLK I+
Sbjct: 50 GYGFVISXWNMPNMDGLELLKTIR 73
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 18/85 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKV 108
+I+ + MP M G ELLK I+
Sbjct: 49 GYGFVISXWNMPNMDGLELLKTIRA 73
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 18/84 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIK 107
+I+ + MP M G ELLK I+
Sbjct: 49 GYGFVISXWNMPNMDGLELLKTIR 72
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 63 RRALQFLGL----DEEQSINGFDGLKVD---LIITDYCMPGMTGYELLKKIKV 108
R L+ LG D E ++ + L+ +I+D+ MP M G ELLK I+
Sbjct: 21 RNLLKELGFNNVEDAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRA 73
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 49/132 (37%), Gaps = 44/132 (33%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTXXXXXXXXXXXXX 131
D + ++N + DLI+ + +PG +G + +K +K
Sbjct: 34 DYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLK------------------------ 69
Query: 132 XXXXXXXXXXXXXXXXXEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLS 191
S R+IPVV++++ R LE GA+D I KP
Sbjct: 70 -------------------RESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPK 110
Query: 192 D-VKRIKDYLTR 202
+ V RIK + R
Sbjct: 111 ELVARIKAVMRR 122
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
VL VDD+ R +++ ++T + +V +GR A++ + LK D++
Sbjct: 4 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVE-----------KYKELKPDIVT 52
Query: 90 TDYCMPGMTGYELLKKIKVTTP 111
D MP M G + +K+I P
Sbjct: 53 MDITMPEMNGIDAIKEIMKIDP 74
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
VL VDD+ R +++ ++T + +V +GR A++ + LK D++
Sbjct: 3 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVE-----------KYKELKPDIVT 51
Query: 90 TDYCMPGMTGYELLKKIKVTTP 111
D MP M G + +K+I P
Sbjct: 52 MDITMPEMNGIDAIKEIMKIDP 73
>pdb|2QR3|A Chain A, Crystal Structure Of The N-Terminal Signal Receiver Domain
Of Two- Component System Response Regulator From
Bacteroides Fragilis
Length = 140
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 156 REIPVVIMSSENILARIDRCLEDGAEDFIVKP 187
R++PVV+ ++ + R +++GA DF+VKP
Sbjct: 79 RDLPVVLFTAYADIDLAVRGIKEGASDFVVKP 110
>pdb|3KHT|A Chain A, Crystal Structure Of Response Regulator From Hahella
Chejuensis
Length = 144
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 13/78 (16%)
Query: 32 VLAVDDSFVDRKVIERLLTIS--SCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
VL V+D+ D +I R+L C++ VD+G +AL + +Q+ K DLII
Sbjct: 8 VLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQV----QQA-------KYDLII 56
Query: 90 TDYCMPGMTGYELLKKIK 107
D +P G+E+ ++
Sbjct: 57 LDIGLPIANGFEVXSAVR 74
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 44/132 (33%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTXXXXXXXXXXXXX 131
D + ++N + DLI+ + +PG +G + +K ++
Sbjct: 34 DYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLR------------------------ 69
Query: 132 XXXXXXXXXXXXXXXXXEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLS 191
S R+IPVV++++ R LE GA+D I KP
Sbjct: 70 -------------------RESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPK 110
Query: 192 D-VKRIKDYLTR 202
+ V RIK + R
Sbjct: 111 ELVARIKAVMRR 122
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
Length = 149
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 154 ALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL 190
L++IPVVIM++ + I+ C +IVKP+++
Sbjct: 89 VLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEI 125
>pdb|3N53|A Chain A, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
pdb|3N53|B Chain B, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
Length = 140
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD-VKRIKDYL 200
S L+ +P++++ S I L GA+D++ KP +D + RI+ +L
Sbjct: 71 SKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHL 120
>pdb|2RDM|A Chain A, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
pdb|2RDM|B Chain B, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
pdb|2RDM|C Chain C, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
Length = 132
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDL 87
E V +L DD + E LT + VTAV SG +A++ L G +D
Sbjct: 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEXLK----------SGAAIDG 53
Query: 88 IITD--YCMP--GMTGYELLKKIKVTTPFNFL 115
++TD +C P G + ++I P ++
Sbjct: 54 VVTDIRFCQPPDGWQVARVAREIDPNXPIVYI 85
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 13/88 (14%)
Query: 22 LSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCK--VTAVDSGRRALQFLGLDEEQSING 79
+S E+V V+ DD + R+ + R L++S V D G AL+ +
Sbjct: 8 MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLP----- 62
Query: 80 FDGLKVDLIITDYCMPGMTGYELLKKIK 107
D+ + DY MPGM G ++ ++
Sbjct: 63 ------DVALLDYRMPGMDGAQVAAAVR 84
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/47 (23%), Positives = 25/47 (53%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYST 118
D ++ FD D+++ D +PGM+G ++ K+++ + + T
Sbjct: 36 DGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVT 82
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 159 PVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRI 196
P+V +++ + I CLE G F+ KP+K +K I
Sbjct: 83 PIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTI 120
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
H+L V+D V R ++ + V G Q L E IN L+I
Sbjct: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEXHQILS---EYDIN--------LVIX 53
Query: 91 DYCMPGMTGYELLKKIK 107
D +PG G L ++++
Sbjct: 54 DINLPGKNGLLLARELR 70
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 159 PVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRI 196
P+V +++ + I CLE G F+ KP+K +K I
Sbjct: 82 PIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTI 119
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 55/172 (31%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDD + +E +L + +V SG ALQ + + L D +I D
Sbjct: 7 LLIVDDDDTVAEXLELVLRGAGYEVRRAASGEEALQQI----------YKNLP-DALICD 55
Query: 92 YCMPGMTGYELLKKIKVTTPFNFLYSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQD 151
+PG+ GY L K+++
Sbjct: 56 VLLPGIDGYTLCKRVR-------------------------------------------Q 72
Query: 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD-VKRIKDYLTR 202
+ +P++ ++++ ++ E GA D++ KP + + V R+K+ L R
Sbjct: 73 HPLTKTLPILXLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILAR 124
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ VL VDDS R V++ ++ S + V + L+ + E++I LK D+I
Sbjct: 26 IRVLVVDDSAFMRMVLKDIID-SQPDMKVVGFAKDGLEAV----EKAIE----LKPDVIT 76
Query: 90 TDYCMPGMTGYELLKKIKVTTP 111
D MP + G E LK I P
Sbjct: 77 MDIEMPNLNGIEALKLIMKKAP 98
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 158 IPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189
+P+V+++++ + LE GA+D+I+KP K
Sbjct: 77 VPIVMLTAKTDTVDVVLGLESGADDYIMKPFK 108
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
H+L V+D V R ++ + V G Q L E IN L+I
Sbjct: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS---EYDIN--------LVIM 53
Query: 91 DYCMPGMTGYELLKKIKVTTPFNFLYST 118
D +PG G L ++++ ++ T
Sbjct: 54 DINLPGKNGLLLARELREQANVALMFLT 81
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 16/85 (18%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
VH+ VDD RK + +LT++ V S L F NG +++
Sbjct: 6 VHI--VDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAF----APDVRNG-------VLV 52
Query: 90 TDYCMPGMTGYELLKK---IKVTTP 111
TD MP M+G ELL+ +K+ P
Sbjct: 53 TDLRMPDMSGVELLRNLGDLKINIP 77
>pdb|3HNO|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|D Chain D, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
Length = 419
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 152 SSALREIPVVIMSSE------NILARIDRCLEDGAEDFIV--KPVKLSDVKRIKDYLTRD 203
SS REIPVVI+ E LA++D C++ +V + VK D K + D RD
Sbjct: 205 SSPEREIPVVILFPEISFDKQKFLAKVDSCVKKFGYCSVVVSEGVKGDDGKFLSDQGVRD 264
Query: 204 V 204
Sbjct: 265 A 265
>pdb|1WLH|A Chain A, Molecular Structure Of The Rod Domain Of Dictyostelium
Filamin
pdb|1WLH|B Chain B, Molecular Structure Of The Rod Domain Of Dictyostelium
Filamin
Length = 311
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 7 VASLRLISDEIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVT--AVDSGRR 64
V +L L D ++GF P + + S+ + + + ++ + + T AVD+
Sbjct: 80 VINLTLDGDNVNGF---PKTVTVKPAPSAEHSYAEGEGLVKVFDNAPAEFTIFAVDTKGV 136
Query: 65 ALQFLGLDEEQSINGFDGLKVDLIITD 91
A G E +ING DGL VD +TD
Sbjct: 137 ARTDGGDPFEVAINGPDGLVVDAKVTD 163
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 74 EQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107
E+++ F DL+I D MPG++G E+ +I+
Sbjct: 35 EEALKKFFSGNYDLVILDIEMPGISGLEVAGEIR 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,719,179
Number of Sequences: 62578
Number of extensions: 188960
Number of successful extensions: 647
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 489
Number of HSP's gapped (non-prelim): 205
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)