BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023816
(276 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZWS9|ARR3_ARATH Two-component response regulator ARR3 OS=Arabidopsis thaliana
GN=ARR3 PE=2 SV=1
Length = 231
Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 133/271 (49%), Positives = 163/271 (60%), Gaps = 52/271 (19%)
Query: 1 MTTTNGVASLR---LISDEIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVT 57
M GV+ LR +I I + P D+++VHVLAVDDS VDR VIERLL I+SCKVT
Sbjct: 1 MAKDGGVSCLRRSEMIGIGIGELESPPLDSDQVHVLAVDDSLVDRIVIERLLRITSCKVT 60
Query: 58 AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYS 117
AVDSG RAL+FLGLD++++ FD LKVDLIITDYCMPGMTGYELLKKIK +T F
Sbjct: 61 AVDSGWRALEFLGLDDDKAAVEFDRLKVDLIITDYCMPGMTGYELLKKIKESTSF----- 115
Query: 118 TIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLE 177
+E+PVVIMSSEN++ RIDRCLE
Sbjct: 116 --------------------------------------KEVPVVIMSSENVMTRIDRCLE 137
Query: 178 DGAEDFIVKPVKLSDVKRIKDYLTRDVNLGNEGRGINKRKARESCDLS--SSPPSVITSS 235
+GAEDF++KPVKL+DVKR++ YLTRDV + EG NKRK S+ S+ +S
Sbjct: 138 EGAEDFLLKPVKLADVKRLRSYLTRDVKVAAEG---NKRKLTTPPPPPPLSATSSMESSD 194
Query: 236 SSPSSPSSPFRSPSILSSSAPCSPPSTLDSP 266
S+ SP S L+ S P S S +DSP
Sbjct: 195 STVESPLSMVDDEDSLTMS-PESATSLVDSP 224
>sp|O82798|ARR4_ARATH Two-component response regulator ARR4 OS=Arabidopsis thaliana
GN=ARR4 PE=1 SV=1
Length = 259
Score = 209 bits (531), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/221 (53%), Positives = 140/221 (63%), Gaps = 51/221 (23%)
Query: 1 MTTTNGVASLR----LISDEIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKV 56
M GV+ LR + I G + +P D +EVHVLAVDDS VDR VIERLL I+SCKV
Sbjct: 1 MARDGGVSCLRRSEMMSVGGIGGIESAPLDLDEVHVLAVDDSLVDRIVIERLLRITSCKV 60
Query: 57 TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLY 116
TAVDSG RAL+FLGLD E++ FD LKVDLIITDYCMPGMTGYELLKKIK
Sbjct: 61 TAVDSGWRALEFLGLDNEKASAEFDRLKVDLIITDYCMPGMTGYELLKKIK--------- 111
Query: 117 STIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCL 176
+SS RE+PVVIMSSEN+L RIDRCL
Sbjct: 112 ----------------------------------ESSNFREVPVVIMSSENVLTRIDRCL 137
Query: 177 EDGAEDFIVKPVKLSDVKRIKDYLTRDVNLGNEGRGINKRK 217
E+GA+DF++KPVKL+DVKR++ +LT+DV L N NKRK
Sbjct: 138 EEGAQDFLLKPVKLADVKRLRSHLTKDVKLSNG----NKRK 174
>sp|Q9ZWS6|ARR6_ARATH Two-component response regulator ARR6 OS=Arabidopsis thaliana
GN=ARR6 PE=1 SV=2
Length = 186
Score = 184 bits (467), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 103/188 (54%), Positives = 121/188 (64%), Gaps = 44/188 (23%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+HVLAVDDS VDRK IERLL +SSCKVT VDS RALQ+LGLD E+ GF+ LKV+LI+
Sbjct: 25 LHVLAVDDSHVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDVEEKSVGFEDLKVNLIM 84
Query: 90 TDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLE 149
TDY MPGMTGYELLKKIK
Sbjct: 85 TDYSMPGMTGYELLKKIK------------------------------------------ 102
Query: 150 QDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDVNLGNE 209
+SSA RE+PVVIMSSENIL RIDRCLE+GAEDF++KPVKLSDVKR++D L + +L
Sbjct: 103 -ESSAFREVPVVIMSSENILPRIDRCLEEGAEDFLLKPVKLSDVKRLRDSLMKVEDLSF- 160
Query: 210 GRGINKRK 217
+ I KR+
Sbjct: 161 TKSIQKRE 168
>sp|Q9SB04|ARR5_ARATH Two-component response regulator ARR5 OS=Arabidopsis thaliana
GN=ARR5 PE=1 SV=2
Length = 184
Score = 180 bits (457), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 99/174 (56%), Positives = 114/174 (65%), Gaps = 44/174 (25%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLD-EEQSINGFDGLKVDLI 88
+HVLAVDDS VDRK IERLL +SSCKVT VDS RALQ+LGLD E S GF+ LK++LI
Sbjct: 25 LHVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDGENNSSVGFEDLKINLI 84
Query: 89 ITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNL 148
+TDY MPGMTGYELLKKIK
Sbjct: 85 MTDYSMPGMTGYELLKKIK----------------------------------------- 103
Query: 149 EQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202
+SSA REIPVVIMSSENIL RIDRCLE+GAEDF++KPVKL+DVKR++D L +
Sbjct: 104 --ESSAFREIPVVIMSSENILPRIDRCLEEGAEDFLLKPVKLADVKRLRDSLMK 155
>sp|Q7G8V2|ARR15_ARATH Two-component response regulator ARR15 OS=Arabidopsis thaliana
GN=ARR15 PE=1 SV=1
Length = 206
Score = 176 bits (447), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/174 (54%), Positives = 115/174 (66%), Gaps = 43/174 (24%)
Query: 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLI 88
E+HVLAVDDSFVDRKVIERLL IS+CKVT V+SG RALQ+LGLD + +G LKV+LI
Sbjct: 17 ELHVLAVDDSFVDRKVIERLLKISACKVTTVESGTRALQYLGLDGDNGSSGLKDLKVNLI 76
Query: 89 ITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNL 148
+TDY MPG+TGYELLKKIK
Sbjct: 77 VTDYSMPGLTGYELLKKIK----------------------------------------- 95
Query: 149 EQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202
+SSALREIPVVIMSSENI RI++C+ +GAE+F++KPVKL+DVKR+K+ + R
Sbjct: 96 --ESSALREIPVVIMSSENIQPRIEQCMIEGAEEFLLKPVKLADVKRLKELIMR 147
>sp|Q9ZWS7|ARR7_ARATH Two-component response regulator ARR7 OS=Arabidopsis thaliana
GN=ARR7 PE=1 SV=1
Length = 206
Score = 174 bits (441), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 103/205 (50%), Positives = 127/205 (61%), Gaps = 49/205 (23%)
Query: 19 GFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSIN 78
G DL+ + T E+HVLAVDDS VDRKVIERLL ISSCKVT V+SG RALQ+LGLD + +
Sbjct: 14 GGDLTVT-TPELHVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQYLGLDGGKGAS 72
Query: 79 GFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFC 138
LKV+LI+TDY MPG++GY+LLKKIK
Sbjct: 73 NLKDLKVNLIVTDYSMPGLSGYDLLKKIK------------------------------- 101
Query: 139 FPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKD 198
+SSA RE+PVVIMSSENIL RI CL++GAE+F++KPVKL+DVKRIK
Sbjct: 102 ------------ESSAFREVPVVIMSSENILPRIQECLKEGAEEFLLKPVKLADVKRIKQ 149
Query: 199 YLTRDVNLGNEGRGI---NKRKARE 220
+ R N E + + NKRK +E
Sbjct: 150 LIMR--NEAEECKILSHSNKRKLQE 172
>sp|Q9SHC2|ARR16_ARATH Two-component response regulator ARR16 OS=Arabidopsis thaliana
GN=ARR16 PE=1 SV=1
Length = 164
Score = 151 bits (382), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 83/184 (45%), Positives = 110/184 (59%), Gaps = 46/184 (25%)
Query: 20 FDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGL-DEEQSIN 78
L EE+HVLAVDD+ +DRK++ERLL IS CKVT ++ RAL++LGL D+ Q I+
Sbjct: 19 HHLHHGHDEELHVLAVDDNLIDRKLVERLLKISCCKVTTAENALRALEYLGLGDQNQHID 78
Query: 79 GF--DGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSIC 136
+ +KV LIITDYCMPGMTG+ELLKK+K
Sbjct: 79 ALTCNVMKVSLIITDYCMPGMTGFELLKKVK----------------------------- 109
Query: 137 FCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRI 196
+SS LRE+PVVIMSSENI RI++CL GA+ F+ KP+KL+DV+++
Sbjct: 110 --------------ESSNLREVPVVIMSSENIPTRINKCLASGAQMFMQKPLKLADVEKL 155
Query: 197 KDYL 200
K +L
Sbjct: 156 KCHL 159
>sp|O80366|ARR9_ARATH Two-component response regulator ARR9 OS=Arabidopsis thaliana
GN=ARR9 PE=1 SV=1
Length = 234
Score = 151 bits (381), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 83/184 (45%), Positives = 108/184 (58%), Gaps = 53/184 (28%)
Query: 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSIN---------- 78
+ HVLAVDDS DRK+IERLL SSC+VT VDSG +AL+FLGL + N
Sbjct: 8 QFHVLAVDDSLFDRKLIERLLQKSSCQVTTVDSGSKALEFLGLRQSTDSNDPNAFSKAPV 67
Query: 79 GFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFC 138
++V+LIITDYCMPGMTGY+LLKK+K
Sbjct: 68 NHQVVEVNLIITDYCMPGMTGYDLLKKVK------------------------------- 96
Query: 139 FPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKD 198
+SSA R+IPVVIMSSEN+ ARI RCLE+GAE+F +KPV+L+D+ ++K
Sbjct: 97 ------------ESSAFRDIPVVIMSSENVPARISRCLEEGAEEFFLKPVRLADLNKLKP 144
Query: 199 YLTR 202
++ +
Sbjct: 145 HMMK 148
>sp|Q9FPR6|ARR17_ARATH Two-component response regulator ARR17 OS=Arabidopsis thaliana
GN=ARR17 PE=2 SV=1
Length = 153
Score = 150 bits (380), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 109/174 (62%), Gaps = 44/174 (25%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDG-LKVD 86
EE+HVLAVDD+ +DRK++ER+L ISSCKVT ++G RAL++LGL + Q + +KV+
Sbjct: 18 EELHVLAVDDNLIDRKLVERILKISSCKVTTAENGLRALEYLGLGDPQQTDSLTNVMKVN 77
Query: 87 LIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSN 146
LIITDYCMPGMTG+ELLKK+K
Sbjct: 78 LIITDYCMPGMTGFELLKKVK--------------------------------------- 98
Query: 147 NLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 200
+SS L+E+PVVI+SSENI RI++CL GA+ F+ KP+KLSDV+++K +L
Sbjct: 99 ----ESSNLKEVPVVILSSENIPTRINKCLASGAQMFMQKPLKLSDVEKLKCHL 148
>sp|O80365|ARR8_ARATH Two-component response regulator ARR8 OS=Arabidopsis thaliana
GN=ARR8 PE=1 SV=1
Length = 225
Score = 148 bits (373), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 107/180 (59%), Gaps = 51/180 (28%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLD-EEQSINGF-------DG 82
HVLAVDDS DRK+IERLL SSC+VT VDSG +AL+FLGL ++ N
Sbjct: 10 HVLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFLGLRVDDNDPNALSTSPQIHQE 69
Query: 83 LKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFF 142
++++LIITDYCMPGMTGY+LLKK+K
Sbjct: 70 VEINLIITDYCMPGMTGYDLLKKVK----------------------------------- 94
Query: 143 FPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202
+S+A R IPVVIMSSEN+ ARI RCLE+GAE+F +KPVKL+D+ ++K ++ +
Sbjct: 95 --------ESAAFRSIPVVIMSSENVPARISRCLEEGAEEFFLKPVKLADLTKLKPHMMK 146
>sp|A2YQ93|PRR37_ORYSI Two-component response regulator-like PRR37 OS=Oryza sativa subsp.
indica GN=PRR37 PE=2 SV=2
Length = 742
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 52/173 (30%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ VL VD R+V+ LL +V ++G++A +L D + SI DL++
Sbjct: 62 IKVLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTYL-EDMQNSI--------DLVL 112
Query: 90 TDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLE 149
T+ MPG++G LL +I +IC
Sbjct: 113 TEVVMPGVSGISLLSRI------------------------MNHNIC------------- 135
Query: 150 QDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202
+ IPV++MSS + + + +CL GA DF+VKP++ +++K + ++ R
Sbjct: 136 ------KNIPVIMMSSNDAMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 182
>sp|Q0D3B6|PRR37_ORYSJ Two-component response regulator-like PRR37 OS=Oryza sativa subsp.
japonica GN=PRR37 PE=2 SV=1
Length = 742
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 52/173 (30%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ VL VD R+V+ LL +V ++G++A +L D + SI DL++
Sbjct: 62 IKVLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTYL-EDMQNSI--------DLVL 112
Query: 90 TDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLE 149
T+ MPG++G LL +I +IC
Sbjct: 113 TEVVMPGVSGISLLSRI------------------------MNHNIC------------- 135
Query: 150 QDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202
+ IPV++MSS + + + +CL GA DF+VKP++ +++K + ++ R
Sbjct: 136 ------KNIPVIMMSSNDAMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 182
>sp|Q9LYP5|ARR21_ARATH Putative two-component response regulator ARR21 OS=Arabidopsis
thaliana GN=ARR21 PE=2 SV=3
Length = 613
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 56/171 (32%)
Query: 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLI 88
+++V+ VDD V ++ R+L S +V AVD ++AL L + + +DLI
Sbjct: 15 KINVMVVDDDHVFLDIMSRMLQHSKYRVIAVDDPKKALSTLKIQRD---------NIDLI 65
Query: 89 ITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNL 148
ITDY MPGM G +L K+I
Sbjct: 66 ITDYYMPGMNGLQLKKQI------------------------------------------ 83
Query: 149 EQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDY 199
+ +PV++MSS+ + + L GA FI KP+ +D+ +I +
Sbjct: 84 ---TQEFGNLPVLVMSSD--TNKEEESLSCGAMGFIPKPIHPTDLTKIYQF 129
>sp|P62598|ARR12_ARATH Two-component response regulator ARR12 OS=Arabidopsis thaliana
GN=ARR12 PE=2 SV=2
Length = 596
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 78/184 (42%), Gaps = 58/184 (31%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VLAVDD K++E LL VT + ++AL+ L ++ K DL+I+D
Sbjct: 19 VLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKN---------KFDLVISD 69
Query: 92 YCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQD 151
MP M G++LL+ + LE D
Sbjct: 70 VDMPDMDGFKLLELV----------------------------------------GLEMD 89
Query: 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR---DVNLGN 208
+PV+++S+ + + + + GA D+++KPV++ ++K I ++ R D N G+
Sbjct: 90 ------LPVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIWQHVVRSRFDKNRGS 143
Query: 209 EGRG 212
G
Sbjct: 144 NNNG 147
>sp|Q8L500|APRR9_ARATH Two-component response regulator-like APRR9 OS=Arabidopsis thaliana
GN=APRR9 PE=2 SV=2
Length = 468
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 52/177 (29%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ VL V+ + R++I LL KV AV G A + L +E+S N +DLI+
Sbjct: 37 LRVLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVL---KEKSHN------IDLIL 87
Query: 90 TDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLE 149
T+ +P ++G+ LL L
Sbjct: 88 TELDLPSISGFALLA-------------------------------------------LV 104
Query: 150 QDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDVNL 206
+ A + IPV++MSS++ + + +C+ GA D+++KP++ +++K + ++ R + L
Sbjct: 105 MEHEACKNIPVIMMSSQDSIKMVLKCMLRGAADYLIKPMRKNELKNLWQHVWRRLTL 161
>sp|Q9FXD6|ARR11_ARATH Two-component response regulator ARR11 OS=Arabidopsis thaliana
GN=ARR11 PE=1 SV=1
Length = 521
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 55/173 (31%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ VL VDD K++E++L S +VT R AL+ L + +G+D ++I
Sbjct: 11 LRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLL----RERKDGYD-----IVI 61
Query: 90 TDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLE 149
+D MP M G++LL+ + LE
Sbjct: 62 SDVNMPDMDGFKLLEHV----------------------------------------GLE 81
Query: 150 QDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202
D +PV++MS + +R+ + ++ GA D+++KP+++ ++K I ++ R
Sbjct: 82 LD------LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQHVLR 128
>sp|Q23917|PDE2_DICDI 3',5'-cyclic-nucleotide phosphodiesterase regA OS=Dictyostelium
discoideum GN=regA PE=1 SV=1
Length = 793
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 56/169 (33%)
Query: 21 DLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGF 80
+ SPS +V +L DD V RK++ LL VT V +G A +++ ++
Sbjct: 154 EYSPS---KVRILVADDDDVQRKILNNLLKKFHYNVTLVPNGEIAWEYINKGQQ------ 204
Query: 81 DGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFP 140
K DL++TD MP +TG++LL++I
Sbjct: 205 ---KYDLVLTDVMMPHITGFDLLQRI---------------------------------- 227
Query: 141 FFFPSNNLEQDSSALREIPVVIMSSENI-LARIDRCLEDGAEDFIVKPV 188
D R IPV++MS + + ++ G +DF+ KP+
Sbjct: 228 ---------NDHPVHRHIPVILMSGTAVDYKYANDTIKIGGQDFLTKPI 267
>sp|Q6LA42|APRR5_ARATH Two-component response regulator-like APRR5 OS=Arabidopsis thaliana
GN=APRR5 PE=1 SV=2
Length = 558
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 52/173 (30%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ VL V+ R++I LL S +V AV G +A + L E VDLI+
Sbjct: 50 LRVLLVEADDSTRQIIAALLRKCSYRVAAVPDGLKAWEMLKGKPE---------SVDLIL 100
Query: 90 TDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLE 149
T+ +P ++GY LL T+I+ + IC
Sbjct: 101 TEVDLPSISGYALL--------------TLIMEHD----------IC------------- 123
Query: 150 QDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202
+ IPV++MS+++ + + +C+ GA D++VKP++ ++++ + ++ R
Sbjct: 124 ------KNIPVIMMSTQDSVNTVYKCMLKGAADYLVKPLRRNELRNLWQHVWR 170
>sp|O22267|CKI1_ARATH Histidine kinase CKI1 OS=Arabidopsis thaliana GN=CKI1 PE=1 SV=1
Length = 1122
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 24 PSDTEEVH---VLAVDDSFVDRKVIE-RLLTISSCKVTAVDSGRRALQFL--GLDEEQSI 77
PSD E + VL VDD+F+ RKV +L + +V DSG+ AL+ + GL + +
Sbjct: 977 PSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQ 1036
Query: 78 NGFDGLKVDLIITDYCMPGMTGYELLKKIK 107
D L D I D MP M GYE ++I+
Sbjct: 1037 GSVDKLPFDYIFMDCQMPEMDGYEATREIR 1066
>sp|Q10N34|PRR73_ORYSJ Two-component response regulator-like PRR73 OS=Oryza sativa subsp.
japonica GN=PRR73 PE=2 SV=1
Length = 767
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 52/171 (30%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL V++ R+V+ LL +V ++G A Q L E N +DL++T+
Sbjct: 83 VLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWQCL----EDLQN-----HIDLVLTE 133
Query: 92 YCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQD 151
MP ++G LL KI IC
Sbjct: 134 VVMPRLSGIGLLSKI------------------------TSHKIC--------------- 154
Query: 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202
++IPV++MSS + + + +CL GA DF+VKP++ +++K + ++ R
Sbjct: 155 ----KDIPVIMMSSNDSMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 201
>sp|A2XFB7|PRR73_ORYSI Two-component response regulator-like PRR73 OS=Oryza sativa subsp.
indica GN=PRR73 PE=2 SV=2
Length = 767
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 52/171 (30%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL V++ R+V+ LL +V ++G A Q L E N +DL++T+
Sbjct: 83 VLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWQCL----EDLQN-----HIDLVLTE 133
Query: 92 YCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQD 151
MP ++G LL KI IC
Sbjct: 134 VVMPRLSGIGLLSKI------------------------TSHKIC--------------- 154
Query: 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202
++IPV++MSS + + + +CL GA DF+VKP++ +++K + ++ R
Sbjct: 155 ----KDIPVIMMSSNDSMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 201
>sp|Q689G6|PRR95_ORYSJ Two-component response regulator-like PRR95 OS=Oryza sativa subsp.
japonica GN=PRR95 PE=2 SV=1
Length = 623
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 52/173 (30%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
V VL + R +I LL +V A G +A L +E+S N +DL++
Sbjct: 43 VRVLLAEGDDSTRHIICALLRKCGYRVAAASDGVKAWDIL---KEKSFN------IDLVL 93
Query: 90 TDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLE 149
T+ +P M+G+ L STI +E
Sbjct: 94 TEVELPLMSGF-------------LLLSTI----------------------------ME 112
Query: 150 QDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202
D A + IPV++MSS + ++ + +C+ GA DF+VKP++ ++++ + ++ R
Sbjct: 113 HD--ACKNIPVIMMSSNDSVSMVFKCMLKGAADFLVKPIRKNELRNLWQHVWR 163
>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana
GN=ARR2 PE=1 SV=1
Length = 664
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 55/171 (32%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL VDD ++ER+L +VT + AL L ++ NGFD ++I+D
Sbjct: 30 VLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLL----RKNKNGFD-----IVISD 80
Query: 92 YCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQD 151
MP M G++LL+ + LE D
Sbjct: 81 VHMPDMDGFKLLEHV----------------------------------------GLEMD 100
Query: 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202
+PV++MS+++ + + + + GA D+++KPV++ +K I ++ R
Sbjct: 101 ------LPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRIEALKNIWQHVVR 145
>sp|Q9ZVD3|ARR13_ARATH Putative two-component response regulator ARR13 OS=Arabidopsis
thaliana GN=ARR13 PE=2 SV=2
Length = 572
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 12/81 (14%)
Query: 29 EVHVLAVDDSFVDRKVIERLLTISSCK---VTAVDSGRRALQFLGLDEEQSINGFDGLKV 85
+++V+ VDD+ V + R+L S + V AVD ++AL L + +
Sbjct: 15 KINVMVVDDNRVFLDIWSRMLEKSKYREITVIAVDYPKKALSTLKNQRD---------NI 65
Query: 86 DLIITDYCMPGMTGYELLKKI 106
DLIITDY MPGM G +L K+I
Sbjct: 66 DLIITDYYMPGMNGLQLKKQI 86
>sp|P0C0F7|RPFC_XANC8 Sensory/regulatory protein RpfC OS=Xanthomonas campestris pv.
campestris (strain 8004) GN=rpfC PE=3 SV=2
Length = 726
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ +L DD +R V++RLL + KV V+ EQ ++ D +I
Sbjct: 462 MRMLVADDHEANRMVLQRLLEKAGHKVLCVNGA-----------EQVLDAMAEEDYDAVI 510
Query: 90 TDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVF 122
D MPGM G ++LK+++V Y+ ++V
Sbjct: 511 VDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVL 543
>sp|P0C0F6|RPFC_XANCP Sensory/regulatory protein RpfC OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=rpfC PE=1 SV=2
Length = 726
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ +L DD +R V++RLL + KV V+ EQ ++ D +I
Sbjct: 462 MRMLVADDHEANRMVLQRLLEKAGHKVLCVNGA-----------EQVLDAMAEEDYDAVI 510
Query: 90 TDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVF 122
D MPGM G ++LK+++V Y+ ++V
Sbjct: 511 VDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVL 543
>sp|O49397|ARR10_ARATH Two-component response regulator ARR10 OS=Arabidopsis thaliana
GN=ARR10 PE=1 SV=1
Length = 552
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 55/171 (32%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VLAVDD ++++ LL VT + + AL+ L ++ K DL+I+D
Sbjct: 19 VLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELLRENKN---------KFDLVISD 69
Query: 92 YCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQD 151
MP M G++LL+ + LE D
Sbjct: 70 VDMPDMDGFKLLELV----------------------------------------GLEMD 89
Query: 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202
+PV+++S+ + + + ++ GA D+++KPV++ ++K I ++ R
Sbjct: 90 ------LPVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELKNIWQHVVR 134
>sp|Q9LVG4|APRR3_ARATH Two-component response regulator-like APRR3 OS=Arabidopsis thaliana
GN=APRR3 PE=1 SV=1
Length = 495
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 52/171 (30%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL V++ R ++ LL S +VTAV A + L ++E+S +DL++T+
Sbjct: 66 VLLVENDDSTRHIVTALLKNCSYEVTAVPDVLEAWRIL--EDEKSC-------IDLVLTE 116
Query: 92 YCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQD 151
MP +G LL KI + T
Sbjct: 117 VDMPVHSGTGLLSKI-------MSHKT--------------------------------- 136
Query: 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202
L+ IPV++MSS + + + +CL +GA DF+VKP++ +++K + ++ R
Sbjct: 137 ---LKNIPVIMMSSHDSMVLVFKCLSNGAVDFLVKPIRKNELKNLWQHVWR 184
>sp|Q93WK5|APRR7_ARATH Two-component response regulator-like APRR7 OS=Arabidopsis thaliana
GN=APRR7 PE=2 SV=1
Length = 727
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 52/173 (30%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ VL V++ R ++ LL S +V +G +A + L + +N +D+++
Sbjct: 78 IRVLLVENDDCTRYIVTALLRNCSYEVVEASNGIQAWKVL-----EDLNNH----IDIVL 128
Query: 90 TDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLE 149
T+ MP ++G LL KI LN +
Sbjct: 129 TEVIMPYLSGIGLLCKI----------------LNHK----------------------- 149
Query: 150 QDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202
+ R IPV++MSS + + + +CL GA DF+VKP++ +++K + ++ R
Sbjct: 150 ----SRRNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKILWQHVWR 198
>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana
GN=ARR1 PE=1 SV=2
Length = 690
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 55/171 (32%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL VDD ++ER+L +VT + AL L ++ +GFD ++I+D
Sbjct: 39 VLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLL----RKNKHGFD-----IVISD 89
Query: 92 YCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQD 151
MP M G++LL+ + LE D
Sbjct: 90 VHMPDMDGFKLLEHV----------------------------------------GLEMD 109
Query: 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202
+PV++MS+++ + + + + GA D+++KPV++ +K I ++ R
Sbjct: 110 ------LPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEALKNIWQHVVR 154
>sp|Q54RP6|DHKL_DICDI Hybrid signal transduction histidine kinase L OS=Dictyostelium
discoideum GN=dhkL PE=3 SV=1
Length = 1709
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 70/182 (38%), Gaps = 53/182 (29%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL VDD+ ++ +++ ++L C+V +V SG AL IN G D I D
Sbjct: 1571 VLVVDDNHINIQILSKMLQTVGCEVDSVLSGADAL--------AKINQSSGDSYDAIFLD 1622
Query: 92 YCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQD 151
MP M G+++ +KI+ F P
Sbjct: 1623 IQMPDMDGFQVSRKIREREK------------------------KFSLPRV--------- 1649
Query: 152 SSALREIPVVIMSSENILARID-RCLEDGAEDFIVKPVKLSDVKRIKDYLTRDVNLGNEG 210
+I ++ N+ +C + G +DFI KP+K +++K I ++ GN
Sbjct: 1650 --------AIIATTANVFKEDQLKCFDAGMDDFISKPIKRAEIKEIIKKYGKN---GNHQ 1698
Query: 211 RG 212
G
Sbjct: 1699 SG 1700
>sp|Q9C5U2|AHK2_ARATH Histidine kinase 2 OS=Arabidopsis thaliana GN=AHK2 PE=1 SV=1
Length = 1176
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 35/160 (21%)
Query: 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLI 88
E +L VDD+ V+R+V E L VT V+SG+ AL L + + FD +DL
Sbjct: 1034 EKQILVVDDNLVNRRVAEGALKKYGAIVTCVESGKAALAML-----KPPHNFDACFMDLQ 1088
Query: 89 ITDYCMPGMTGYELLKKIK-VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNN 147
MP M G+E ++++ + N ++ V + FC F S +
Sbjct: 1089 -----MPEMDGFEATRRVRELEREINKKIASGEVSAEM-----------FC---KFSSWH 1129
Query: 148 LEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187
+P++ M+++ I A + C++ G + ++ KP
Sbjct: 1130 ----------VPILAMTADVIQATHEECMKCGMDGYVSKP 1159
>sp|Q9LKL2|APRR1_ARATH Two-component response regulator-like APRR1 OS=Arabidopsis thaliana
GN=APRR1 PE=1 SV=1
Length = 618
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 77/185 (41%), Gaps = 56/185 (30%)
Query: 18 DGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSI 77
DGF D V +L D+ + LL+ S +VTAV S R+ + L +
Sbjct: 11 DGF----IDRSRVRILLCDNDSTSLGEVFTLLSECSYQVTAVKSARQVIDALNAE----- 61
Query: 78 NGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICF 137
G +D+I+ + +P G ++L+ I
Sbjct: 62 ----GPDIDIILAEIDLPMAKGMKMLRYI------------------------------- 86
Query: 138 CFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIK 197
++D LR IPV++MS ++ + + +CL+ GA D++VKP++ +++ +
Sbjct: 87 ---------TRDKD---LRRIPVIMMSRQDEVPVVVKCLKLGAADYLVKPLRTNELLNLW 134
Query: 198 DYLTR 202
++ R
Sbjct: 135 THMWR 139
>sp|A1W0A5|CHEY_CAMJJ Chemotaxis protein CheY homolog OS=Campylobacter jejuni subsp.
jejuni serotype O:23/36 (strain 81-176) GN=cheY PE=3
SV=1
Length = 130
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 54/157 (34%)
Query: 32 VLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
+L VDDS R++I+ LT + V + G A L +E+ V ++IT
Sbjct: 3 LLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKNED----------VKVLIT 52
Query: 91 DYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQ 150
D+ MP M G EL+KK++ +
Sbjct: 53 DWNMPEMNGLELVKKVRAEKKY-------------------------------------- 74
Query: 151 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187
++P++++++E A + L+ G ++IVKP
Sbjct: 75 -----EDMPIIMVTTEGGKAEVITALKAGVNNYIVKP 106
>sp|P0C635|CHEY_CAMJE Chemotaxis protein CheY homolog OS=Campylobacter jejuni subsp.
jejuni serotype O:2 (strain NCTC 11168) GN=cheY PE=3
SV=1
Length = 130
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 54/157 (34%)
Query: 32 VLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
+L VDDS R++I+ LT + V + G A L +E+ V ++IT
Sbjct: 3 LLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKNED----------VKVLIT 52
Query: 91 DYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQ 150
D+ MP M G EL+KK++ +
Sbjct: 53 DWNMPEMNGLELVKKVRAEKKY-------------------------------------- 74
Query: 151 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187
++P++++++E A + L+ G ++IVKP
Sbjct: 75 -----EDMPIIMVTTEGGKAEVITALKAGVNNYIVKP 106
>sp|A8FMH1|CHEY_CAMJ8 Chemotaxis protein CheY homolog OS=Campylobacter jejuni subsp.
jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=cheY
PE=3 SV=1
Length = 130
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 54/157 (34%)
Query: 32 VLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
+L VDDS R++I+ LT + V + G A L +E+ V ++IT
Sbjct: 3 LLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKNED----------VKVLIT 52
Query: 91 DYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQ 150
D+ MP M G EL+KK++ +
Sbjct: 53 DWNMPEMNGLELVKKVRAEKKY-------------------------------------- 74
Query: 151 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187
++P++++++E A + L+ G ++IVKP
Sbjct: 75 -----EDMPIIMVTTEGGKAEVITALKAGVNNYIVKP 106
>sp|Q689G9|PRR1_ORYSJ Two-component response regulator-like PRR1 OS=Oryza sativa subsp.
japonica GN=PRR1 PE=2 SV=2
Length = 518
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 35/48 (72%)
Query: 155 LREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202
LR IP+++MS+ + ++ + +CL GA +++VKP++++++ + ++ R
Sbjct: 101 LRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLWTHVWR 148
>sp|Q9ZTP3|EIN4_ARATH Protein EIN4 OS=Arabidopsis thaliana GN=EIN4 PE=1 SV=1
Length = 766
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 36 DDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95
DD V+R V +RLL C+VTAV SG L L E + ++I D MP
Sbjct: 648 DDDDVNRTVTKRLLEKLGCEVTAVSSGFECLNALSNVE---------MSYRVVILDLQMP 698
Query: 96 GMTGYELLKKIK 107
M G+E+ KI+
Sbjct: 699 EMDGFEVAMKIR 710
>sp|P23221|FIXJ_BRAJA Transcriptional regulatory protein FixJ OS=Bradyrhizobium japonicum
(strain USDA 110) GN=fixJ PE=3 SV=1
Length = 205
Score = 39.3 bits (90), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVD 86
T + H+ +DD R + LL + VT D D + ++ GL
Sbjct: 2 TTKGHIYVIDDDAAMRDSLNFLLDSAGFGVTLFD-----------DAQAFLDALPGLSFG 50
Query: 87 LIITDYCMPGMTGYELLKKIKV-TTPFNFLYST 118
+++D MPG+ G ELLK++K +PF L T
Sbjct: 51 CVVSDVRMPGLDGIELLKRMKAQQSPFPILIMT 83
>sp|Q04942|AFSQ1_STRCO Transcriptional regulatory protein AfsQ1 OS=Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145) GN=afsQ1 PE=1 SV=2
Length = 225
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 79/205 (38%), Gaps = 70/205 (34%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L ++D R +E LT +V SG L+ L EQ + DLI+ D
Sbjct: 4 LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLL---REQ--------RPDLIVLD 52
Query: 92 YCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQD 151
+PG+ G+E+ ++I+ T
Sbjct: 53 VMLPGIDGFEVCRRIRRTD----------------------------------------- 71
Query: 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDVNLGNEGR 211
++P++++++ N + LE GA+D++VKPV+ R+ D R
Sbjct: 72 -----QLPIILLTARNDDIDVVVGLESGADDYVVKPVQ----GRVLDARI---------R 113
Query: 212 GINKRKARESCDLSSSPPSVITSSS 236
+ +R RES D +S VI S+
Sbjct: 114 AVLRRGERESTDSASFGSLVIDRSA 138
>sp|P03029|NTRC_KLEPN Nitrogen assimilation regulatory protein OS=Klebsiella pneumoniae
GN=ntrC PE=1 SV=1
Length = 469
Score = 38.9 bits (89), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 35 VDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM 94
VDD R V+ER LT + T +SG L L D++++D M
Sbjct: 9 VDDDSSIRWVLERALTGAGLSCTTFESGNEVLDALTTKTP-----------DVLLSDIRM 57
Query: 95 PGMTGYELLKKIKVTTPF 112
PGM G LLK+IK P
Sbjct: 58 PGMDGLALLKQIKQRHPM 75
>sp|Q7Y0W5|EHD1_ORYSJ Two-component response regulator EHD1 OS=Oryza sativa subsp.
japonica GN=EHD1 PE=1 SV=1
Length = 341
Score = 38.9 bits (89), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 55/173 (31%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ VL +DD V+E LL S KVT + R A+ F+ LD Q VDL+I
Sbjct: 11 LRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFI-LDNPQI--------VDLVI 61
Query: 90 TDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLE 149
+D P G +L++ VT+ F
Sbjct: 62 SDAFFPTEDGLLILQE--VTSKFG------------------------------------ 83
Query: 150 QDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202
IP VIM+S + + + +GA DF++KPV++ ++ I ++ R
Sbjct: 84 --------IPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFR 128
>sp|Q7Y0W3|EHD1_ORYSI Two-component response regulator EHD1 OS=Oryza sativa subsp. indica
PE=2 SV=1
Length = 341
Score = 38.9 bits (89), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 55/173 (31%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ VL +DD V+E LL S KVT + R A+ F+ LD Q VDL+I
Sbjct: 11 LRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFI-LDNPQI--------VDLVI 61
Query: 90 TDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLE 149
+D P G +L++ VT+ F
Sbjct: 62 SDAFFPTEDGLLILQE--VTSKFG------------------------------------ 83
Query: 150 QDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202
IP VIM+S + + + +GA DF++KPV++ ++ I ++ R
Sbjct: 84 --------IPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFR 128
>sp|Q65JK6|CHEB_BACLD Chemotaxis response regulator protein-glutamate methylesterase
OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580)
GN=cheB PE=3 SV=1
Length = 357
Score = 38.5 bits (88), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ VL VDDS R +I + LT S+ ++ + R E+++ L+ D+I
Sbjct: 2 IRVLVVDDSAFMRNMITKFLT-SNHEIAVAGTARNG--------EEALQKIKELRPDVIT 52
Query: 90 TDYCMPGMTGYELLKKIKVTTPF 112
D MP M G E LK+I + P
Sbjct: 53 LDIEMPVMNGKETLKRIMASDPL 75
>sp|Q9TLQ4|YCF27_CYACA Probable transcriptional regulator ycf27 OS=Cyanidium caldarium
GN=ycf27 PE=3 SV=1
Length = 249
Score = 38.5 bits (88), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 23 SPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDG 82
+ + + H+L VDD RK+++ LT+ V+ +G AL+ F
Sbjct: 5 NKQNKRQHHLLIVDDENNIRKILQTRLTLLGYSVSTACNGEEALKI-----------FTT 53
Query: 83 LKVDLIITDYCMPGMTGYELLKKIK 107
+DLII D MP + GY + ++I+
Sbjct: 54 HSIDLIILDVMMPKLDGYGVCQEIR 78
>sp|P14376|RCSC_ECOLI Sensor kinase protein RcsC OS=Escherichia coli (strain K12) GN=rcsC
PE=1 SV=3
Length = 949
Score = 38.5 bits (88), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 21 DLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGF 80
D + SD +++ +L VDD ++R+++ L + + G AL L +
Sbjct: 816 DKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH------- 868
Query: 81 DGLKVDLIITDYCMPGMTGYELLKKIK 107
+D++++D MP M GY L ++I+
Sbjct: 869 ----IDIVLSDVNMPNMDGYRLTQRIR 891
>sp|P0AFB8|NTRC_ECOLI Nitrogen regulation protein NR(I) OS=Escherichia coli (strain K12)
GN=glnG PE=3 SV=1
Length = 469
Score = 38.1 bits (87), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
V VDD R V+ER L + T ++G L+ L D++++D
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTP-----------DVLLSD 54
Query: 92 YCMPGMTGYELLKKIKVTTPF 112
MPGM G LLK+IK P
Sbjct: 55 IRMPGMDGLALLKQIKQRHPM 75
>sp|P0AFB9|NTRC_ECO57 Nitrogen regulation protein NR(I) OS=Escherichia coli O157:H7
GN=glnG PE=3 SV=1
Length = 469
Score = 38.1 bits (87), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
V VDD R V+ER L + T ++G L+ L D++++D
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTP-----------DVLLSD 54
Query: 92 YCMPGMTGYELLKKIKVTTPF 112
MPGM G LLK+IK P
Sbjct: 55 IRMPGMDGLALLKQIKQRHPM 75
>sp|P41789|NTRC_SALTY Nitrogen regulation protein NR(I) OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=glnG PE=1 SV=2
Length = 469
Score = 37.7 bits (86), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
V VDD R V+ER L + T ++G L L D++++D
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALA-----------SKTPDVLLSD 54
Query: 92 YCMPGMTGYELLKKIKVTTPF 112
MPGM G LLK+IK P
Sbjct: 55 IRMPGMDGLALLKQIKQRHPM 75
>sp|Q6BGW4|SRR1_DEBHA Stress response regulator protein 1 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=SRR1 PE=3 SV=2
Length = 242
Score = 37.7 bits (86), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKV 85
+T + L VDD+F++ K++ER+L T V + + + + + L Q+
Sbjct: 113 NTNPYNFLLVDDNFINLKILERVLLKLYPNCTIVKT-QDSTKIMALLHSQTF-------- 163
Query: 86 DLIITDYCMPGMTGYELLKKIKVTTPFN 113
D+ D MPG+TG EL K I++ N
Sbjct: 164 DVAFLDIEMPGLTGIELAKMIRMEDKLN 191
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,233,312
Number of Sequences: 539616
Number of extensions: 4118038
Number of successful extensions: 27314
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 316
Number of HSP's that attempted gapping in prelim test: 24003
Number of HSP's gapped (non-prelim): 2953
length of query: 276
length of database: 191,569,459
effective HSP length: 116
effective length of query: 160
effective length of database: 128,974,003
effective search space: 20635840480
effective search space used: 20635840480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)