Query 023816
Match_columns 276
No_of_seqs 190 out of 1808
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 06:52:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023816.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023816hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0745 OmpR Response regulato 99.9 2.2E-21 4.8E-26 175.0 16.5 118 30-203 1-118 (229)
2 COG2204 AtoC Response regulato 99.8 1.3E-20 2.8E-25 185.8 15.4 125 29-209 4-128 (464)
3 COG4753 Response regulator con 99.8 1.7E-20 3.6E-25 185.2 14.2 121 29-205 1-124 (475)
4 PF00072 Response_reg: Respons 99.8 8E-20 1.7E-24 140.5 15.0 110 32-197 1-111 (112)
5 PLN03029 type-a response regul 99.8 2.5E-19 5.5E-24 159.3 19.0 136 25-203 4-148 (222)
6 COG4565 CitB Response regulato 99.8 5.3E-19 1.1E-23 159.3 15.1 131 30-216 1-133 (224)
7 COG0784 CheY FOG: CheY-like re 99.8 2.8E-18 6.1E-23 134.8 16.6 116 27-198 3-121 (130)
8 KOG0519 Sensory transduction h 99.8 3.1E-19 6.7E-24 185.4 14.4 120 27-200 664-783 (786)
9 COG3437 Response regulator con 99.8 1.3E-18 2.8E-23 166.2 14.2 126 19-197 4-129 (360)
10 COG2197 CitB Response regulato 99.8 1.2E-17 2.5E-22 148.5 16.2 118 30-203 1-120 (211)
11 COG4566 TtrR Response regulato 99.8 1E-17 2.2E-22 148.8 13.9 115 29-199 4-118 (202)
12 PRK10046 dpiA two-component re 99.8 6.1E-17 1.3E-21 142.0 17.6 120 29-204 4-125 (225)
13 PRK10816 DNA-binding transcrip 99.7 2.3E-16 5.1E-21 134.5 16.6 117 30-202 1-117 (223)
14 PRK10529 DNA-binding transcrip 99.7 2.9E-16 6.4E-21 133.7 17.0 116 30-202 2-117 (225)
15 PRK10643 DNA-binding transcrip 99.7 3.3E-16 7.1E-21 131.8 16.9 117 30-202 1-117 (222)
16 PRK09836 DNA-binding transcrip 99.7 3.2E-16 6.9E-21 134.0 16.9 117 30-202 1-117 (227)
17 PRK10841 hybrid sensory kinase 99.7 1.7E-16 3.6E-21 167.1 17.8 120 27-202 799-918 (924)
18 PRK10336 DNA-binding transcrip 99.7 4.9E-16 1.1E-20 130.9 16.5 117 30-202 1-117 (219)
19 PRK11173 two-component respons 99.7 4.4E-16 9.4E-21 134.9 16.6 118 28-202 2-119 (237)
20 PRK11083 DNA-binding response 99.7 6.3E-16 1.4E-20 130.6 16.8 118 28-201 2-119 (228)
21 PRK11107 hybrid sensory histid 99.7 2.8E-16 6.1E-21 160.7 17.0 121 27-201 665-785 (919)
22 PRK15347 two component system 99.7 3.6E-16 7.7E-21 160.3 17.4 122 28-201 689-810 (921)
23 PRK10430 DNA-binding transcrip 99.7 9.1E-16 2E-20 135.5 16.6 119 30-202 2-122 (239)
24 PRK09468 ompR osmolarity respo 99.7 1.3E-15 2.8E-20 131.5 17.0 118 29-202 5-122 (239)
25 COG3706 PleD Response regulato 99.7 5.6E-16 1.2E-20 152.0 16.3 123 28-204 131-254 (435)
26 PRK10766 DNA-binding transcrip 99.7 1.4E-15 2.9E-20 129.3 16.6 117 29-202 2-118 (221)
27 PRK10701 DNA-binding transcrip 99.7 1.3E-15 2.9E-20 131.8 16.7 116 30-202 2-117 (240)
28 TIGR03787 marine_sort_RR prote 99.7 1.5E-15 3.4E-20 129.5 16.7 116 31-202 2-119 (227)
29 PRK11466 hybrid sensory histid 99.7 5.6E-16 1.2E-20 159.5 16.6 121 27-202 679-799 (914)
30 PRK10161 transcriptional regul 99.7 1.8E-15 3.8E-20 129.6 16.8 119 30-202 3-121 (229)
31 PRK10955 DNA-binding transcrip 99.7 1.8E-15 4E-20 128.8 16.6 115 30-202 2-116 (232)
32 TIGR02154 PhoB phosphate regul 99.7 1.8E-15 3.9E-20 127.4 16.2 120 29-202 2-121 (226)
33 TIGR02956 TMAO_torS TMAO reduc 99.7 7.5E-16 1.6E-20 158.9 16.3 124 26-202 699-822 (968)
34 CHL00148 orf27 Ycf27; Reviewed 99.7 3.3E-15 7.2E-20 127.8 17.3 118 28-202 5-122 (240)
35 PRK10840 transcriptional regul 99.7 2.1E-15 4.6E-20 130.6 16.1 119 28-202 2-125 (216)
36 PRK09958 DNA-binding transcrip 99.7 3.8E-15 8.3E-20 124.8 16.1 117 30-202 1-118 (204)
37 PRK09483 response regulator; P 99.7 3.7E-15 8.1E-20 126.0 16.1 118 29-202 1-120 (217)
38 PRK11517 transcriptional regul 99.7 4.5E-15 9.8E-20 125.7 16.5 115 30-201 1-115 (223)
39 PRK13856 two-component respons 99.7 4.3E-15 9.3E-20 129.6 16.5 115 31-202 3-118 (241)
40 TIGR01387 cztR_silR_copR heavy 99.7 5.3E-15 1.1E-19 124.2 16.0 114 32-201 1-114 (218)
41 PRK11091 aerobic respiration c 99.6 2.4E-15 5.3E-20 153.1 16.1 120 27-201 523-643 (779)
42 TIGR02875 spore_0_A sporulatio 99.6 5.1E-15 1.1E-19 131.7 16.2 119 29-201 2-122 (262)
43 PRK09935 transcriptional regul 99.6 9.1E-15 2E-19 122.1 16.5 120 27-202 1-122 (210)
44 PRK10923 glnG nitrogen regulat 99.6 5.7E-15 1.2E-19 142.8 17.4 118 28-201 2-119 (469)
45 COG3947 Response regulator con 99.6 8.2E-16 1.8E-20 144.6 10.1 120 30-207 1-120 (361)
46 PRK09581 pleD response regulat 99.6 2.4E-15 5.2E-20 140.3 13.2 118 27-199 153-270 (457)
47 PRK14084 two-component respons 99.6 8.8E-15 1.9E-19 128.3 15.8 115 30-202 1-117 (246)
48 PRK15115 response regulator Gl 99.6 6E-15 1.3E-19 141.5 16.0 120 27-202 3-122 (444)
49 PRK11361 acetoacetate metaboli 99.6 7.5E-15 1.6E-19 140.8 16.2 117 29-201 4-120 (457)
50 PRK10365 transcriptional regul 99.6 5.7E-15 1.2E-19 140.8 15.2 117 28-200 4-120 (441)
51 PRK09959 hybrid sensory histid 99.6 8.2E-15 1.8E-19 155.4 17.6 117 29-201 958-1074(1197)
52 PRK10360 DNA-binding transcrip 99.6 2.3E-14 4.9E-19 119.4 15.6 114 30-202 2-117 (196)
53 TIGR02915 PEP_resp_reg putativ 99.6 1.1E-14 2.3E-19 139.8 15.0 112 32-201 1-117 (445)
54 PRK15479 transcriptional regul 99.6 4.6E-14 1E-18 118.7 16.7 117 30-202 1-117 (221)
55 PRK09390 fixJ response regulat 99.6 3.9E-14 8.5E-19 115.9 15.2 118 28-201 2-119 (202)
56 PRK11697 putative two-componen 99.6 3E-14 6.5E-19 123.8 15.2 115 29-202 1-117 (238)
57 PRK10710 DNA-binding transcrip 99.6 7.5E-14 1.6E-18 119.5 17.3 116 29-201 10-125 (240)
58 COG4567 Response regulator con 99.6 1.5E-14 3.3E-19 125.3 13.0 111 31-197 11-121 (182)
59 TIGR01818 ntrC nitrogen regula 99.6 2.8E-14 6.1E-19 137.3 15.9 113 32-200 1-113 (463)
60 PRK12555 chemotaxis-specific m 99.6 3E-14 6.6E-19 133.1 15.7 102 30-188 1-106 (337)
61 PRK15369 two component system 99.6 2.9E-13 6.3E-18 111.2 16.2 118 28-201 2-121 (211)
62 PRK10403 transcriptional regul 99.5 3.5E-13 7.5E-18 112.0 16.4 118 28-201 5-124 (215)
63 PRK10651 transcriptional regul 99.5 3.7E-13 7.9E-18 112.3 16.6 120 27-202 4-125 (216)
64 PRK09581 pleD response regulat 99.5 2.8E-13 6.1E-18 126.4 17.3 120 30-203 3-122 (457)
65 PRK13558 bacterio-opsin activa 99.5 9.2E-14 2E-18 139.2 14.8 107 28-190 6-112 (665)
66 PRK00742 chemotaxis-specific m 99.5 2E-13 4.3E-18 128.2 16.2 106 27-189 1-110 (354)
67 PRK10610 chemotaxis regulatory 99.5 1.7E-12 3.6E-17 96.9 16.6 120 28-201 4-124 (129)
68 PRK13435 response regulator; P 99.5 1.1E-12 2.3E-17 106.1 15.4 115 27-201 3-119 (145)
69 COG2201 CheB Chemotaxis respon 99.5 1.5E-13 3.3E-18 131.7 12.0 104 29-189 1-108 (350)
70 PRK10100 DNA-binding transcrip 99.5 1.3E-12 2.7E-17 116.9 14.7 117 26-203 7-127 (216)
71 PRK11475 DNA-binding transcrip 99.4 2.6E-12 5.6E-17 114.4 13.7 105 42-202 3-114 (207)
72 cd00156 REC Signal receiver do 99.4 8.7E-12 1.9E-16 88.1 13.0 110 33-198 1-110 (113)
73 PRK13837 two-component VirA-li 99.4 8.7E-12 1.9E-16 129.4 16.8 117 29-202 697-813 (828)
74 PRK15411 rcsA colanic acid cap 99.4 9.3E-12 2E-16 110.0 14.4 115 31-202 2-122 (207)
75 PRK09191 two-component respons 99.4 3.3E-11 7.1E-16 106.1 15.7 114 29-201 137-252 (261)
76 COG3707 AmiR Response regulato 99.3 6.8E-12 1.5E-16 111.7 11.0 114 29-199 5-119 (194)
77 PRK13557 histidine kinase; Pro 99.3 3.2E-11 6.9E-16 115.0 16.1 118 29-201 415-533 (540)
78 PRK10693 response regulator of 99.3 3.8E-11 8.3E-16 111.5 12.5 87 58-200 2-89 (303)
79 PRK15029 arginine decarboxylas 99.2 3.4E-10 7.3E-15 118.0 13.3 107 30-193 1-122 (755)
80 COG3279 LytT Response regulato 99.1 2.3E-10 4.9E-15 104.3 10.2 117 29-203 1-119 (244)
81 PRK11107 hybrid sensory histid 98.5 2E-06 4.3E-11 88.7 15.0 115 26-198 533-647 (919)
82 COG3706 PleD Response regulato 98.1 3.7E-06 8.1E-11 83.3 4.6 91 54-202 13-103 (435)
83 smart00448 REC cheY-homologous 98.0 5.9E-05 1.3E-09 46.5 7.5 55 30-95 1-55 (55)
84 PF06490 FleQ: Flagellar regul 97.4 0.002 4.4E-08 52.2 10.1 105 31-199 1-106 (109)
85 PRK10618 phosphotransfer inter 97.2 0.00072 1.6E-08 72.4 6.6 52 26-94 686-737 (894)
86 cd02071 MM_CoA_mut_B12_BD meth 96.8 0.036 7.9E-07 45.2 12.3 103 36-194 10-117 (122)
87 PF03709 OKR_DC_1_N: Orn/Lys/A 96.6 0.027 5.8E-07 45.9 10.3 96 42-193 6-103 (115)
88 PRK02261 methylaspartate mutas 96.5 0.13 2.8E-06 43.4 13.7 110 28-193 2-126 (137)
89 cd02067 B12-binding B12 bindin 96.3 0.06 1.3E-06 43.1 10.2 96 36-187 10-110 (119)
90 TIGR00640 acid_CoA_mut_C methy 96.2 0.28 6E-06 41.3 14.1 105 36-196 13-122 (132)
91 PRK15399 lysine decarboxylase 94.6 0.47 1E-05 50.4 12.3 69 30-111 1-75 (713)
92 PF02310 B12-binding: B12 bind 94.4 0.51 1.1E-05 37.2 9.7 64 37-111 12-80 (121)
93 PRK15400 lysine decarboxylase 94.1 0.55 1.2E-05 49.8 11.6 69 30-111 1-75 (714)
94 TIGR03815 CpaE_hom_Actino heli 93.5 0.25 5.5E-06 46.2 7.2 41 160-200 44-85 (322)
95 COG2185 Sbm Methylmalonyl-CoA 93.0 3.6 7.9E-05 35.6 13.0 118 28-201 11-138 (143)
96 TIGR01501 MthylAspMutase methy 92.2 3.6 7.7E-05 35.0 11.8 59 39-108 15-78 (134)
97 PRK00208 thiG thiazole synthas 91.1 3.3 7E-05 39.0 11.2 29 157-185 175-203 (250)
98 cd04728 ThiG Thiazole synthase 90.1 2.2 4.9E-05 40.0 9.2 29 157-185 175-203 (248)
99 cd02069 methionine_synthase_B1 89.7 3.1 6.8E-05 37.5 9.7 70 29-109 88-166 (213)
100 PF01408 GFO_IDH_MocA: Oxidore 89.3 5 0.00011 31.3 9.5 47 157-203 64-112 (120)
101 cd02068 radical_SAM_B12_BD B12 88.0 8.2 0.00018 31.1 10.2 61 40-111 3-67 (127)
102 cd02072 Glm_B12_BD B12 binding 87.8 15 0.00032 31.1 11.8 100 39-194 13-123 (128)
103 cd02070 corrinoid_protein_B12- 87.8 9.8 0.00021 33.6 11.4 70 29-109 82-160 (201)
104 PRK09426 methylmalonyl-CoA mut 86.4 15 0.00033 39.1 13.7 109 29-193 582-699 (714)
105 PRK01130 N-acetylmannosamine-6 85.3 15 0.00032 32.6 11.2 30 157-186 173-202 (221)
106 PRK13111 trpA tryptophan synth 84.0 4.1 8.9E-05 38.0 7.3 46 157-202 89-140 (258)
107 PF02254 TrkA_N: TrkA-N domain 83.1 15 0.00032 28.6 9.2 93 30-185 22-115 (116)
108 TIGR00262 trpA tryptophan synt 82.8 5.5 0.00012 36.9 7.6 46 157-202 87-138 (256)
109 PRK12704 phosphodiesterase; Pr 81.4 3.5 7.6E-05 42.2 6.3 38 158-195 250-289 (520)
110 TIGR02370 pyl_corrinoid methyl 81.3 11 0.00025 33.3 8.8 63 36-109 95-162 (197)
111 COG4999 Uncharacterized domain 81.1 14 0.00031 31.6 8.7 105 28-195 10-119 (140)
112 COG0512 PabA Anthranilate/para 81.0 4.8 0.0001 36.4 6.3 54 29-93 1-54 (191)
113 PRK00278 trpC indole-3-glycero 80.6 46 0.00099 30.8 12.8 29 157-185 211-239 (260)
114 PRK10558 alpha-dehydro-beta-de 80.1 22 0.00048 33.0 10.6 73 81-197 37-110 (256)
115 PRK05718 keto-hydroxyglutarate 78.9 41 0.00089 30.5 11.7 91 46-193 9-100 (212)
116 cd00331 IGPS Indole-3-glycerol 77.6 49 0.0011 29.1 12.3 29 157-185 172-200 (217)
117 TIGR03151 enACPred_II putative 77.2 27 0.0006 33.1 10.5 83 45-185 101-189 (307)
118 TIGR00007 phosphoribosylformim 77.0 40 0.00086 29.8 10.9 29 157-185 189-217 (230)
119 cd00452 KDPG_aldolase KDPG and 76.9 23 0.0005 30.8 9.2 79 48-186 92-171 (190)
120 cd04729 NanE N-acetylmannosami 76.4 44 0.00094 29.6 11.0 30 157-186 177-206 (219)
121 PF03602 Cons_hypoth95: Conser 76.3 10 0.00022 33.4 6.8 68 30-108 66-139 (183)
122 PRK00043 thiE thiamine-phospha 75.9 27 0.00059 30.1 9.4 28 157-185 160-187 (212)
123 cd04724 Tryptophan_synthase_al 75.9 14 0.0003 33.7 7.9 46 157-202 76-127 (242)
124 PRK10128 2-keto-3-deoxy-L-rham 74.9 37 0.0008 31.9 10.6 68 82-193 37-104 (267)
125 PRK08385 nicotinate-nucleotide 74.7 35 0.00075 32.4 10.4 96 32-185 157-258 (278)
126 PRK03659 glutathione-regulated 74.1 40 0.00087 34.9 11.5 109 29-186 400-518 (601)
127 TIGR00693 thiE thiamine-phosph 73.8 35 0.00076 29.3 9.5 28 157-185 152-179 (196)
128 TIGR02026 BchE magnesium-proto 73.7 40 0.00086 34.0 11.1 108 38-202 21-137 (497)
129 PLN02871 UDP-sulfoquinovose:DA 73.6 38 0.00082 33.1 10.7 46 152-201 350-398 (465)
130 TIGR03239 GarL 2-dehydro-3-deo 73.5 47 0.001 30.7 10.8 72 82-197 31-103 (249)
131 cd05212 NAD_bind_m-THF_DH_Cycl 73.4 14 0.00031 31.3 6.8 53 27-95 26-82 (140)
132 PRK05458 guanosine 5'-monophos 72.7 14 0.0003 35.9 7.3 55 84-184 111-166 (326)
133 TIGR01334 modD putative molybd 72.6 16 0.00035 34.7 7.6 68 58-184 194-261 (277)
134 PF01596 Methyltransf_3: O-met 72.5 20 0.00043 32.2 7.8 69 29-106 70-141 (205)
135 PRK05749 3-deoxy-D-manno-octul 72.4 35 0.00076 32.7 10.0 64 136-202 323-387 (425)
136 PRK13125 trpA tryptophan synth 71.7 52 0.0011 29.9 10.5 31 157-187 185-215 (244)
137 PLN02591 tryptophan synthase 71.4 16 0.00035 34.0 7.2 46 157-202 78-129 (250)
138 PRK10669 putative cation:proto 71.4 52 0.0011 33.4 11.5 40 29-69 417-456 (558)
139 PRK03958 tRNA 2'-O-methylase; 71.0 66 0.0014 28.8 10.6 57 31-96 33-91 (176)
140 cd04730 NPD_like 2-Nitropropan 70.0 77 0.0017 27.9 11.2 30 157-186 156-185 (236)
141 TIGR02311 HpaI 2,4-dihydroxyhe 69.9 60 0.0013 29.9 10.6 77 81-201 30-107 (249)
142 COG0673 MviM Predicted dehydro 69.9 49 0.0011 30.4 10.1 46 157-202 69-116 (342)
143 cd04726 KGPDC_HPS 3-Keto-L-gul 69.5 72 0.0016 27.3 11.5 29 157-186 158-186 (202)
144 PF05582 Peptidase_U57: YabG p 69.5 63 0.0014 31.1 10.7 51 29-90 105-160 (287)
145 CHL00200 trpA tryptophan synth 68.4 18 0.00039 33.9 6.9 46 157-202 91-142 (263)
146 PRK00811 spermidine synthase; 68.3 33 0.00071 32.0 8.6 67 30-108 101-179 (283)
147 PF01564 Spermine_synth: Sperm 68.2 27 0.00058 32.1 7.9 69 29-108 100-179 (246)
148 cd02065 B12-binding_like B12 b 68.2 23 0.00051 27.6 6.6 65 36-111 10-78 (125)
149 cd00564 TMP_TenI Thiamine mono 68.0 69 0.0015 26.7 9.9 28 157-185 150-177 (196)
150 PRK03562 glutathione-regulated 67.3 56 0.0012 34.0 10.9 107 29-184 400-516 (621)
151 PF10087 DUF2325: Uncharacteri 67.2 57 0.0012 25.3 9.9 29 31-59 1-29 (97)
152 PRK07649 para-aminobenzoate/an 67.0 6.6 0.00014 34.7 3.6 49 32-91 2-50 (195)
153 TIGR01182 eda Entner-Doudoroff 66.6 94 0.002 28.2 10.9 88 49-193 5-93 (204)
154 TIGR03088 stp2 sugar transfera 66.2 42 0.00091 30.9 8.9 47 152-202 291-337 (374)
155 PRK00748 1-(5-phosphoribosyl)- 65.4 37 0.00079 30.0 8.0 29 157-185 190-219 (233)
156 PRK05458 guanosine 5'-monophos 65.3 1.4E+02 0.003 29.0 12.6 30 157-186 201-230 (326)
157 COG0159 TrpA Tryptophan syntha 65.2 29 0.00063 32.9 7.6 45 157-201 94-144 (265)
158 TIGR02855 spore_yabG sporulati 65.2 71 0.0015 30.7 10.1 51 29-90 104-159 (283)
159 PRK06975 bifunctional uroporph 65.1 1.8E+02 0.0038 30.8 14.1 41 156-200 225-266 (656)
160 PRK15484 lipopolysaccharide 1, 64.8 99 0.0021 29.4 11.3 48 152-203 296-344 (380)
161 PRK06774 para-aminobenzoate sy 64.1 8.3 0.00018 33.5 3.6 49 32-91 2-50 (191)
162 PRK11572 copper homeostasis pr 63.9 47 0.001 31.2 8.7 64 36-110 97-168 (248)
163 COG0742 N6-adenine-specific me 62.6 28 0.00061 31.3 6.7 54 29-92 66-122 (187)
164 cd04727 pdxS PdxS is a subunit 62.5 76 0.0016 30.5 9.9 30 157-186 194-225 (283)
165 TIGR01579 MiaB-like-C MiaB-lik 62.1 78 0.0017 30.9 10.3 94 38-199 9-106 (414)
166 PLN02274 inosine-5'-monophosph 62.0 1.5E+02 0.0032 30.4 12.5 29 157-185 351-379 (505)
167 PF03060 NMO: Nitronate monoox 61.6 89 0.0019 29.8 10.3 83 45-185 128-218 (330)
168 PRK14974 cell division protein 61.5 1.3E+02 0.0029 29.2 11.6 25 82-108 220-246 (336)
169 PRK06543 nicotinate-nucleotide 61.4 62 0.0013 30.9 9.1 66 55-182 195-261 (281)
170 PRK04148 hypothetical protein; 61.1 7 0.00015 33.3 2.5 67 29-108 17-83 (134)
171 PLN02366 spermidine synthase 60.7 59 0.0013 31.1 8.9 68 30-108 116-194 (308)
172 PRK12724 flagellar biosynthesi 60.3 1.2E+02 0.0025 30.9 11.3 52 30-92 253-307 (432)
173 PRK05848 nicotinate-nucleotide 60.3 91 0.002 29.5 10.0 27 159-185 230-256 (273)
174 PRK04302 triosephosphate isome 59.7 1.3E+02 0.0028 26.9 11.5 30 157-186 173-202 (223)
175 smart00052 EAL Putative diguan 59.6 39 0.00084 29.0 6.9 92 44-190 137-239 (241)
176 COG4122 Predicted O-methyltran 59.5 39 0.00085 31.0 7.2 54 29-93 84-141 (219)
177 TIGR00736 nifR3_rel_arch TIM-b 59.4 1.4E+02 0.003 27.6 10.8 60 81-185 158-219 (231)
178 PRK15427 colanic acid biosynth 59.0 1.6E+02 0.0035 28.5 11.8 47 152-202 323-369 (406)
179 cd06346 PBP1_ABC_ligand_bindin 58.8 1.2E+02 0.0025 27.6 10.3 55 42-109 154-215 (312)
180 PRK11359 cyclic-di-GMP phospho 58.7 92 0.002 32.0 10.5 99 45-198 683-792 (799)
181 TIGR02085 meth_trns_rumB 23S r 58.1 1.1E+02 0.0024 29.6 10.5 66 30-110 256-325 (374)
182 COG0269 SgbH 3-hexulose-6-phos 58.1 1.4E+02 0.0031 27.6 10.6 107 30-193 84-204 (217)
183 cd04723 HisA_HisF Phosphoribos 58.1 52 0.0011 29.8 7.8 29 157-185 189-217 (233)
184 PF00290 Trp_syntA: Tryptophan 57.8 24 0.00052 33.1 5.6 45 157-201 87-137 (259)
185 PRK07428 nicotinate-nucleotide 57.7 1.1E+02 0.0023 29.2 10.1 25 160-184 245-269 (288)
186 PRK10742 putative methyltransf 57.6 70 0.0015 30.1 8.7 68 29-108 110-189 (250)
187 TIGR01761 thiaz-red thiazoliny 57.6 1.2E+02 0.0026 29.5 10.5 46 157-202 64-113 (343)
188 PLN02335 anthranilate synthase 57.5 17 0.00037 32.8 4.5 36 26-61 15-50 (222)
189 TIGR00343 pyridoxal 5'-phospha 57.4 47 0.001 31.9 7.6 44 157-200 197-248 (287)
190 PF03932 CutC: CutC family; I 57.3 33 0.00071 31.1 6.2 64 36-110 96-167 (201)
191 PRK07896 nicotinate-nucleotide 56.7 90 0.0019 29.9 9.4 26 159-184 247-272 (289)
192 cd01948 EAL EAL domain. This d 56.5 36 0.00079 29.2 6.2 93 43-190 135-238 (240)
193 cd04962 GT1_like_5 This family 56.4 94 0.002 28.2 9.2 47 152-202 289-335 (371)
194 KOG4175 Tryptophan synthase al 56.2 40 0.00086 31.5 6.6 50 154-203 92-147 (268)
195 PRK06552 keto-hydroxyglutarate 56.0 1.3E+02 0.0029 27.1 10.0 93 47-195 8-103 (213)
196 PRK04457 spermidine synthase; 55.8 1.7E+02 0.0037 27.0 11.8 69 28-108 89-165 (262)
197 cd03813 GT1_like_3 This family 55.4 98 0.0021 30.5 9.8 47 153-203 390-442 (475)
198 TIGR00566 trpG_papA glutamine 55.4 16 0.00034 31.9 3.8 31 32-62 2-32 (188)
199 TIGR00095 RNA methyltransferas 55.3 1.1E+02 0.0024 26.8 9.1 69 31-108 74-145 (189)
200 PRK06559 nicotinate-nucleotide 55.2 57 0.0012 31.3 7.8 91 31-183 169-266 (290)
201 cd03823 GT1_ExpE7_like This fa 55.2 1.4E+02 0.003 26.1 9.8 47 152-202 282-328 (359)
202 PRK11840 bifunctional sulfur c 55.0 73 0.0016 31.2 8.5 29 157-185 249-277 (326)
203 TIGR00064 ftsY signal recognit 55.0 1.5E+02 0.0032 27.7 10.4 67 29-108 100-178 (272)
204 TIGR00417 speE spermidine synt 55.0 1.1E+02 0.0023 28.2 9.4 66 30-108 97-174 (270)
205 COG0418 PyrC Dihydroorotase [N 54.5 5.5 0.00012 38.8 0.9 102 97-200 176-283 (344)
206 cd08187 BDH Butanol dehydrogen 54.1 79 0.0017 30.6 8.7 65 30-108 29-107 (382)
207 PRK08007 para-aminobenzoate sy 54.0 15 0.00032 32.1 3.4 50 32-92 2-51 (187)
208 COG1954 GlpP Glycerol-3-phosph 53.5 1.2E+02 0.0027 27.3 9.1 41 31-71 26-73 (181)
209 COG3836 HpcH 2,4-dihydroxyhept 53.5 77 0.0017 30.0 8.1 79 81-203 35-113 (255)
210 PRK13587 1-(5-phosphoribosyl)- 53.4 1.5E+02 0.0033 27.0 10.0 29 157-185 192-220 (234)
211 PF04131 NanE: Putative N-acet 53.2 1.4E+02 0.003 27.3 9.4 97 30-185 65-172 (192)
212 PRK03522 rumB 23S rRNA methylu 53.1 1.4E+02 0.0031 28.0 10.1 67 30-111 196-266 (315)
213 PRK06978 nicotinate-nucleotide 53.1 61 0.0013 31.2 7.6 89 32-182 179-273 (294)
214 cd06338 PBP1_ABC_ligand_bindin 53.1 1.8E+02 0.0039 26.5 11.0 56 41-109 157-219 (345)
215 COG2265 TrmA SAM-dependent met 52.5 1.1E+02 0.0025 30.7 9.8 72 27-111 313-388 (432)
216 PRK06843 inosine 5-monophospha 52.5 72 0.0016 32.0 8.3 57 82-184 163-220 (404)
217 TIGR03704 PrmC_rel_meth putati 52.0 1.9E+02 0.0041 26.4 10.5 52 29-92 110-161 (251)
218 PRK05567 inosine 5'-monophosph 51.9 2.4E+02 0.0053 28.4 12.1 29 157-185 331-359 (486)
219 PF13659 Methyltransf_26: Meth 51.9 74 0.0016 24.3 6.8 55 29-94 23-80 (117)
220 TIGR01302 IMP_dehydrog inosine 51.8 66 0.0014 32.2 7.9 56 82-183 234-290 (450)
221 PLN02823 spermine synthase 51.5 44 0.00095 32.4 6.5 55 29-95 127-187 (336)
222 cd03818 GT1_ExpC_like This fam 51.4 1.3E+02 0.0029 28.3 9.7 48 152-203 319-366 (396)
223 TIGR01859 fruc_bis_ald_ fructo 51.1 1E+02 0.0022 29.1 8.7 29 157-185 200-229 (282)
224 PF03808 Glyco_tran_WecB: Glyc 51.0 72 0.0016 27.5 7.2 84 27-124 46-138 (172)
225 PTZ00314 inosine-5'-monophosph 51.0 1.8E+02 0.0038 29.7 11.0 30 157-186 344-373 (495)
226 TIGR01163 rpe ribulose-phospha 50.9 1.5E+02 0.0032 25.4 9.1 43 158-200 57-100 (210)
227 PF03328 HpcH_HpaI: HpcH/HpaI 50.7 1.8E+02 0.0038 25.7 9.8 44 158-201 60-107 (221)
228 TIGR00096 probable S-adenosylm 50.5 1.2E+02 0.0025 28.8 9.0 132 29-171 25-165 (276)
229 PF04321 RmlD_sub_bind: RmlD s 50.3 23 0.0005 32.7 4.2 50 30-90 1-57 (286)
230 cd03825 GT1_wcfI_like This fam 50.1 73 0.0016 28.5 7.3 66 30-106 1-73 (365)
231 PRK09140 2-dehydro-3-deoxy-6-p 49.6 1.5E+02 0.0032 26.6 9.1 30 167-197 71-100 (206)
232 COG0421 SpeE Spermidine syntha 49.5 83 0.0018 29.9 7.9 68 30-109 101-179 (282)
233 TIGR01037 pyrD_sub1_fam dihydr 49.1 2.2E+02 0.0048 26.3 11.3 44 157-203 234-283 (300)
234 PRK05703 flhF flagellar biosyn 48.8 2.4E+02 0.0052 28.1 11.3 54 29-92 251-307 (424)
235 PTZ00314 inosine-5'-monophosph 48.1 1.2E+02 0.0026 30.9 9.3 57 82-184 251-308 (495)
236 PF05690 ThiG: Thiazole biosyn 48.0 80 0.0017 29.8 7.3 30 157-186 175-204 (247)
237 PRK06843 inosine 5-monophospha 47.3 2.8E+02 0.0061 27.8 11.5 29 157-185 256-284 (404)
238 cd08179 NADPH_BDH NADPH-depend 47.0 88 0.0019 30.2 7.8 65 30-108 24-102 (375)
239 cd03820 GT1_amsD_like This fam 47.0 1.9E+02 0.004 24.9 10.1 48 152-202 271-318 (348)
240 cd01836 FeeA_FeeB_like SGNH_hy 46.6 76 0.0017 26.5 6.5 56 29-92 2-75 (191)
241 PF01729 QRPTase_C: Quinolinat 46.6 1.4E+02 0.0029 26.2 8.2 70 56-184 83-153 (169)
242 PRK05670 anthranilate synthase 46.6 25 0.00054 30.5 3.6 30 32-61 2-31 (189)
243 PLN02589 caffeoyl-CoA O-methyl 46.5 81 0.0018 29.3 7.2 59 29-93 104-165 (247)
244 PRK06096 molybdenum transport 46.5 1.5E+02 0.0032 28.3 9.1 69 58-185 195-263 (284)
245 PRK11889 flhF flagellar biosyn 46.3 2.9E+02 0.0062 28.3 11.4 71 29-108 269-344 (436)
246 PRK10446 ribosomal protein S6 46.0 75 0.0016 29.4 6.9 31 31-61 2-34 (300)
247 PRK03612 spermidine synthase; 45.5 87 0.0019 31.9 7.8 68 30-109 322-404 (521)
248 PRK06015 keto-hydroxyglutarate 45.2 1.6E+02 0.0034 26.7 8.6 27 167-194 64-90 (201)
249 cd04732 HisA HisA. Phosphorib 45.2 2.1E+02 0.0046 25.1 10.7 29 157-185 190-218 (234)
250 PRK14569 D-alanyl-alanine synt 45.1 57 0.0012 30.3 6.0 54 29-93 3-65 (296)
251 TIGR00734 hisAF_rel hisA/hisF 44.9 1.5E+02 0.0033 26.7 8.5 29 157-185 184-212 (221)
252 TIGR03061 pip_yhgE_Nterm YhgE/ 44.9 80 0.0017 26.6 6.4 52 26-89 40-101 (164)
253 KOG1203 Predicted dehydrogenas 44.8 95 0.0021 31.3 7.8 85 16-111 66-151 (411)
254 PRK05567 inosine 5'-monophosph 44.6 84 0.0018 31.7 7.5 58 81-184 237-295 (486)
255 cd04759 Rib_hydrolase ADP-ribo 44.4 63 0.0014 30.4 6.1 66 4-69 145-232 (242)
256 PRK06552 keto-hydroxyglutarate 44.3 1.6E+02 0.0034 26.7 8.5 80 43-183 99-180 (213)
257 TIGR01305 GMP_reduct_1 guanosi 44.2 1.5E+02 0.0032 29.3 8.8 58 83-186 120-178 (343)
258 PRK13566 anthranilate synthase 43.8 41 0.00088 36.0 5.3 38 25-62 522-559 (720)
259 TIGR01306 GMP_reduct_2 guanosi 43.8 2.4E+02 0.0051 27.5 10.1 57 84-186 108-165 (321)
260 TIGR00479 rumA 23S rRNA (uraci 43.7 2.5E+02 0.0054 27.4 10.5 70 31-111 316-388 (431)
261 PF07652 Flavi_DEAD: Flaviviru 43.5 87 0.0019 27.4 6.4 73 29-108 33-120 (148)
262 COG0313 Predicted methyltransf 43.2 2.6E+02 0.0057 26.8 10.1 70 29-109 30-105 (275)
263 COG0626 MetC Cystathionine bet 43.1 2.2E+02 0.0047 28.5 9.9 53 29-92 102-157 (396)
264 KOG1601 GATA-4/5/6 transcripti 42.6 7.4 0.00016 33.6 -0.3 107 33-193 19-129 (340)
265 PF00497 SBP_bac_3: Bacterial 42.6 73 0.0016 26.2 5.8 54 26-92 107-160 (225)
266 PLN02476 O-methyltransferase 42.5 1.1E+02 0.0024 29.0 7.6 57 30-93 144-203 (278)
267 CHL00101 trpG anthranilate syn 42.4 29 0.00064 30.2 3.5 32 32-63 2-33 (190)
268 PF01729 QRPTase_C: Quinolinat 42.2 1.3E+02 0.0029 26.3 7.5 45 157-202 79-123 (169)
269 KOG1429 dTDP-glucose 4-6-dehyd 42.2 98 0.0021 30.4 7.1 74 27-106 25-98 (350)
270 KOG1562 Spermidine synthase [A 42.0 1.4E+02 0.0031 29.3 8.2 62 31-103 147-214 (337)
271 PRK05637 anthranilate synthase 42.0 42 0.00091 30.1 4.4 33 30-62 2-34 (208)
272 COG2022 ThiG Uncharacterized e 42.0 1.6E+02 0.0034 28.1 8.2 30 157-186 182-211 (262)
273 TIGR00262 trpA tryptophan synt 41.8 2.8E+02 0.006 25.7 9.9 31 157-187 198-228 (256)
274 CHL00162 thiG thiamin biosynth 41.6 1.8E+02 0.004 27.8 8.7 42 157-198 189-235 (267)
275 cd04824 eu_ALAD_PBGS_cysteine_ 41.4 71 0.0015 31.2 6.1 67 60-182 222-288 (320)
276 PRK12723 flagellar biosynthesi 41.3 3.6E+02 0.0078 26.8 11.1 54 29-92 206-262 (388)
277 COG4825 Uncharacterized membra 41.2 87 0.0019 30.8 6.6 55 26-92 177-234 (395)
278 cd03332 LMO_FMN L-Lactate 2-mo 41.2 2.6E+02 0.0056 27.8 10.2 92 38-185 238-336 (383)
279 COG0134 TrpC Indole-3-glycerol 40.9 1.8E+02 0.0039 27.5 8.5 30 157-186 207-236 (254)
280 PRK14329 (dimethylallyl)adenos 40.3 2.2E+02 0.0047 28.6 9.6 97 36-200 34-138 (467)
281 COG2200 Rtn c-di-GMP phosphodi 40.1 2.9E+02 0.0062 25.2 9.7 99 42-195 138-247 (256)
282 cd02940 DHPD_FMN Dihydropyrimi 40.0 2E+02 0.0043 26.9 8.8 28 157-184 252-279 (299)
283 cd08194 Fe-ADH6 Iron-containin 39.9 1.9E+02 0.0042 27.8 8.9 63 31-107 25-100 (375)
284 PRK10060 RNase II stability mo 39.7 2.8E+02 0.0061 28.8 10.6 103 43-200 544-657 (663)
285 PLN02781 Probable caffeoyl-CoA 39.7 1.2E+02 0.0026 27.5 7.0 58 29-93 93-153 (234)
286 PRK07259 dihydroorotate dehydr 39.5 2.5E+02 0.0054 26.0 9.3 27 157-183 234-260 (301)
287 PRK06895 putative anthranilate 39.0 47 0.001 28.8 4.2 32 30-61 2-33 (190)
288 COG0157 NadC Nicotinate-nucleo 39.0 1.9E+02 0.0042 27.8 8.5 107 11-183 146-259 (280)
289 PRK01372 ddl D-alanine--D-alan 39.0 75 0.0016 29.0 5.7 41 41-92 24-64 (304)
290 cd00381 IMPDH IMPDH: The catal 38.8 1.6E+02 0.0034 28.3 8.0 58 82-185 104-162 (325)
291 COG1091 RfbD dTDP-4-dehydrorha 38.8 61 0.0013 30.9 5.2 51 30-92 1-58 (281)
292 cd01424 MGS_CPS_II Methylglyox 38.5 1.7E+02 0.0036 23.0 7.0 71 36-106 9-91 (110)
293 cd06382 PBP1_iGluR_Kainate N-t 38.2 1.7E+02 0.0036 26.7 7.9 77 31-120 131-215 (327)
294 cd03804 GT1_wbaZ_like This fam 38.0 3E+02 0.0064 25.1 9.5 48 152-203 279-326 (351)
295 PRK09016 quinolinate phosphori 37.9 2.4E+02 0.0052 27.2 9.1 25 159-183 253-277 (296)
296 TIGR01163 rpe ribulose-phospha 37.7 2.6E+02 0.0056 23.9 9.7 28 158-186 166-193 (210)
297 COG0144 Sun tRNA and rRNA cyto 37.5 63 0.0014 31.3 5.2 54 29-92 182-237 (355)
298 PRK15128 23S rRNA m(5)C1962 me 37.4 1.2E+02 0.0026 30.0 7.2 54 30-92 244-301 (396)
299 cd00381 IMPDH IMPDH: The catal 37.4 3.8E+02 0.0082 25.7 11.1 29 157-185 197-225 (325)
300 TIGR01303 IMP_DH_rel_1 IMP deh 37.2 1.3E+02 0.0027 30.7 7.4 57 82-184 235-292 (475)
301 PRK08185 hypothetical protein; 37.1 1.4E+02 0.0029 28.5 7.2 27 157-183 198-225 (283)
302 TIGR03449 mycothiol_MshA UDP-N 36.8 3.5E+02 0.0077 25.2 10.7 48 151-202 320-367 (405)
303 PRK04338 N(2),N(2)-dimethylgua 36.7 1.5E+02 0.0033 29.1 7.8 73 30-118 82-157 (382)
304 cd08185 Fe-ADH1 Iron-containin 36.7 1.1E+02 0.0024 29.4 6.8 65 30-108 26-104 (380)
305 TIGR00735 hisF imidazoleglycer 36.5 3.3E+02 0.0072 24.7 10.2 29 157-185 199-228 (254)
306 PRK07455 keto-hydroxyglutarate 36.5 3E+02 0.0064 24.2 9.3 54 48-111 8-62 (187)
307 PF10672 Methyltrans_SAM: S-ad 36.3 1.3E+02 0.0027 28.8 6.9 53 30-92 147-203 (286)
308 PLN02591 tryptophan synthase 36.3 3.6E+02 0.0078 25.1 10.2 32 156-187 188-219 (250)
309 PRK14098 glycogen synthase; Pr 36.1 4.6E+02 0.01 26.3 11.3 53 148-200 396-448 (489)
310 cd01573 modD_like ModD; Quinol 36.0 1.8E+02 0.0038 27.3 7.8 41 160-201 185-225 (272)
311 PRK10909 rsmD 16S rRNA m(2)G96 35.9 1.4E+02 0.0031 26.6 6.9 65 30-108 77-145 (199)
312 PRK03604 moaC bifunctional mol 35.9 1.2E+02 0.0025 29.4 6.7 77 8-91 134-222 (312)
313 PRK10537 voltage-gated potassi 35.9 3.8E+02 0.0081 26.6 10.4 32 29-61 240-271 (393)
314 PF02581 TMP-TENI: Thiamine mo 35.8 2.5E+02 0.0055 24.0 8.2 68 58-184 101-175 (180)
315 PRK07455 keto-hydroxyglutarate 35.7 2.1E+02 0.0047 25.0 7.9 26 157-183 152-177 (187)
316 cd04722 TIM_phosphate_binding 35.4 2.4E+02 0.0052 22.8 9.0 29 157-185 170-198 (200)
317 cd03801 GT1_YqgM_like This fam 35.4 2.9E+02 0.0062 23.7 11.0 44 155-202 297-340 (374)
318 PRK13125 trpA tryptophan synth 34.9 1.7E+02 0.0036 26.6 7.3 45 157-201 74-126 (244)
319 PF00448 SRP54: SRP54-type pro 34.9 91 0.002 27.6 5.4 56 40-108 43-107 (196)
320 PRK13585 1-(5-phosphoribosyl)- 34.8 3.3E+02 0.0071 24.2 9.8 29 157-185 193-221 (241)
321 PRK06935 2-deoxy-D-gluconate 3 34.8 3.1E+02 0.0068 23.9 9.5 44 17-60 3-46 (258)
322 PRK10416 signal recognition pa 34.6 3.9E+02 0.0085 25.6 10.0 52 30-92 143-204 (318)
323 cd00532 MGS-like MGS-like doma 34.6 2.3E+02 0.0051 22.4 7.4 69 40-108 12-97 (112)
324 cd01573 modD_like ModD; Quinol 34.6 3.6E+02 0.0078 25.3 9.6 28 157-185 230-257 (272)
325 PRK06731 flhF flagellar biosyn 34.6 3.9E+02 0.0086 25.1 11.0 66 31-108 105-178 (270)
326 cd00886 MogA_MoaB MogA_MoaB fa 34.3 91 0.002 26.2 5.1 44 41-91 21-68 (152)
327 PRK15490 Vi polysaccharide bio 34.2 5.9E+02 0.013 27.0 12.3 42 152-197 491-532 (578)
328 TIGR03572 WbuZ glycosyl amidat 34.1 2.5E+02 0.0054 24.9 8.1 30 157-186 74-103 (232)
329 TIGR03128 RuMP_HxlA 3-hexulose 34.1 2.1E+02 0.0045 24.7 7.5 18 94-111 34-51 (206)
330 TIGR03572 WbuZ glycosyl amidat 33.9 2.6E+02 0.0056 24.8 8.2 29 157-185 197-226 (232)
331 PF05175 MTS: Methyltransferas 33.9 1.1E+02 0.0024 25.9 5.6 66 29-108 55-124 (170)
332 PRK12727 flagellar biosynthesi 33.9 3.3E+02 0.0072 28.7 9.9 53 30-92 381-436 (559)
333 cd04731 HisF The cyclase subun 33.8 2.3E+02 0.0049 25.3 7.9 44 157-200 71-117 (243)
334 PRK13168 rumA 23S rRNA m(5)U19 33.7 3.5E+02 0.0075 26.8 9.8 70 30-110 320-391 (443)
335 PLN02274 inosine-5'-monophosph 33.6 1.6E+02 0.0035 30.2 7.6 57 82-185 258-316 (505)
336 cd03806 GT1_ALG11_like This fa 33.5 4.5E+02 0.0099 25.5 10.7 46 152-202 343-391 (419)
337 cd04949 GT1_gtfA_like This fam 33.0 2.7E+02 0.0058 25.5 8.4 49 152-203 297-345 (372)
338 PRK04128 1-(5-phosphoribosyl)- 32.9 3.7E+02 0.0079 24.4 9.1 44 157-200 73-118 (228)
339 TIGR01302 IMP_dehydrog inosine 32.9 4.4E+02 0.0096 26.3 10.5 30 157-186 327-356 (450)
340 PLN02716 nicotinate-nucleotide 32.9 2.8E+02 0.006 26.9 8.7 23 160-182 264-286 (308)
341 cd04736 MDH_FMN Mandelate dehy 32.8 4.1E+02 0.009 26.2 10.0 87 41-185 224-317 (361)
342 cd01572 QPRTase Quinolinate ph 32.8 1.7E+02 0.0038 27.3 7.2 43 158-201 182-224 (268)
343 cd08186 Fe-ADH8 Iron-containin 32.7 80 0.0017 30.6 5.1 64 31-108 28-105 (383)
344 PRK01033 imidazole glycerol ph 32.7 2.4E+02 0.0052 25.9 8.0 29 157-185 196-225 (258)
345 cd06343 PBP1_ABC_ligand_bindin 32.6 4E+02 0.0087 24.5 10.4 56 42-110 161-223 (362)
346 TIGR02082 metH 5-methyltetrahy 32.5 3E+02 0.0066 31.4 10.0 71 29-110 732-811 (1178)
347 cd04737 LOX_like_FMN L-Lactate 32.4 4.4E+02 0.0094 25.8 10.1 30 157-186 276-305 (351)
348 PRK09490 metH B12-dependent me 32.3 2.7E+02 0.0058 32.0 9.6 72 29-111 751-831 (1229)
349 cd06389 PBP1_iGluR_AMPA_GluR2 32.3 2.2E+02 0.0047 27.2 7.9 77 31-120 120-210 (370)
350 PRK11829 biofilm formation reg 32.2 5.6E+02 0.012 26.1 11.6 35 161-195 612-650 (660)
351 PRK01581 speE spermidine synth 32.2 2E+02 0.0044 28.7 7.8 68 29-108 174-256 (374)
352 PRK04128 1-(5-phosphoribosyl)- 32.0 1.8E+02 0.0039 26.4 6.9 29 157-185 182-210 (228)
353 TIGR01425 SRP54_euk signal rec 32.0 4.7E+02 0.01 26.5 10.4 24 83-108 181-206 (429)
354 PRK09922 UDP-D-galactose:(gluc 31.9 4.2E+02 0.0091 24.6 10.1 50 153-205 277-326 (359)
355 cd04726 KGPDC_HPS 3-Keto-L-gul 31.8 2.2E+02 0.0048 24.3 7.2 15 97-111 38-52 (202)
356 cd00331 IGPS Indole-3-glycerol 31.8 3.5E+02 0.0076 23.6 9.8 44 157-200 72-117 (217)
357 PF06283 ThuA: Trehalose utili 31.7 1.2E+02 0.0026 26.7 5.6 53 31-95 1-63 (217)
358 TIGR03128 RuMP_HxlA 3-hexulose 31.6 3.4E+02 0.0073 23.4 12.0 27 159-185 159-185 (206)
359 PF12847 Methyltransf_18: Meth 31.2 1.9E+02 0.0041 21.7 6.1 68 28-108 24-99 (112)
360 PF03102 NeuB: NeuB family; I 31.1 1.5E+02 0.0032 27.6 6.3 104 40-203 56-170 (241)
361 PF13941 MutL: MutL protein 31.1 5.9E+02 0.013 26.0 11.4 107 23-188 70-187 (457)
362 PRK07114 keto-hydroxyglutarate 30.9 4.2E+02 0.0092 24.3 9.4 27 167-194 79-105 (222)
363 cd06388 PBP1_iGluR_AMPA_GluR4 30.9 4.8E+02 0.01 25.0 11.2 28 81-110 175-202 (371)
364 cd06284 PBP1_LacI_like_6 Ligan 30.7 2.2E+02 0.0048 24.4 7.1 20 42-61 18-37 (267)
365 PF02887 PK_C: Pyruvate kinase 30.6 1.1E+02 0.0025 24.3 4.9 36 157-193 39-76 (117)
366 cd08170 GlyDH Glycerol dehydro 30.5 2.8E+02 0.0061 26.3 8.3 65 30-108 23-98 (351)
367 PRK08072 nicotinate-nucleotide 30.4 4.6E+02 0.01 24.8 9.6 92 32-185 161-259 (277)
368 PRK07107 inosine 5-monophospha 30.4 2.8E+02 0.0061 28.4 8.7 29 157-185 352-380 (502)
369 PF07688 KaiA: KaiA domain; I 30.4 3.8E+02 0.0083 25.8 8.9 68 32-111 3-70 (283)
370 PRK08857 para-aminobenzoate sy 30.3 61 0.0013 28.3 3.5 30 32-61 2-31 (193)
371 cd08181 PPD-like 1,3-propanedi 30.3 1.5E+02 0.0032 28.4 6.4 64 30-107 26-103 (357)
372 PRK09283 delta-aminolevulinic 30.3 1.2E+02 0.0026 29.7 5.7 66 60-182 225-290 (323)
373 cd04823 ALAD_PBGS_aspartate_ri 30.2 1.3E+02 0.0029 29.4 6.0 67 60-183 222-288 (320)
374 TIGR00735 hisF imidazoleglycer 30.1 3.2E+02 0.0069 24.9 8.3 44 157-200 74-120 (254)
375 PRK05581 ribulose-phosphate 3- 30.1 3.6E+02 0.0079 23.3 10.5 28 159-186 171-198 (220)
376 COG2247 LytB Putative cell wal 30.1 5.3E+02 0.011 25.5 10.0 105 31-187 30-162 (337)
377 PF00465 Fe-ADH: Iron-containi 30.1 49 0.0011 31.6 3.1 77 9-108 10-99 (366)
378 cd02810 DHOD_DHPD_FMN Dihydroo 30.1 4.1E+02 0.009 24.2 9.1 27 157-183 243-269 (289)
379 cd00429 RPE Ribulose-5-phospha 29.9 3.5E+02 0.0076 23.0 9.4 28 158-186 167-194 (211)
380 PRK04180 pyridoxal biosynthesi 29.6 1.1E+02 0.0024 29.6 5.3 29 157-185 203-233 (293)
381 COG0702 Predicted nucleoside-d 29.5 1.4E+02 0.0031 25.9 5.7 39 31-69 2-40 (275)
382 PF02423 OCD_Mu_crystall: Orni 29.5 1.3E+02 0.0028 28.5 5.8 38 31-68 155-192 (313)
383 KOG2335 tRNA-dihydrouridine sy 29.4 4.3E+02 0.0094 26.3 9.4 124 9-185 91-232 (358)
384 cd06341 PBP1_ABC_ligand_bindin 29.4 4.4E+02 0.0095 24.0 10.1 55 42-109 150-211 (341)
385 PRK12726 flagellar biosynthesi 29.3 5.9E+02 0.013 25.8 10.5 71 29-108 234-309 (407)
386 cd04731 HisF The cyclase subun 29.3 3E+02 0.0064 24.6 7.9 29 157-185 193-222 (243)
387 PRK07764 DNA polymerase III su 29.2 1.9E+02 0.0041 31.6 7.6 41 157-199 150-190 (824)
388 PF00534 Glycos_transf_1: Glyc 29.2 3E+02 0.0066 22.1 8.2 44 157-204 116-159 (172)
389 TIGR01304 IMP_DH_rel_2 IMP deh 29.2 2.8E+02 0.0061 27.4 8.2 30 156-185 254-283 (369)
390 PF01081 Aldolase: KDPG and KH 29.2 1.6E+02 0.0034 26.6 5.9 26 167-193 68-93 (196)
391 cd04946 GT1_AmsK_like This fam 29.1 4.7E+02 0.01 25.1 9.7 44 155-202 332-376 (407)
392 cd06533 Glyco_transf_WecG_TagA 29.1 1.9E+02 0.004 24.9 6.3 82 15-109 27-122 (171)
393 cd03811 GT1_WabH_like This fam 29.1 3.7E+02 0.008 23.0 10.2 50 152-205 282-331 (353)
394 cd01568 QPRTase_NadC Quinolina 29.1 2.4E+02 0.0051 26.3 7.4 43 159-202 182-224 (269)
395 TIGR00078 nadC nicotinate-nucl 29.0 2.4E+02 0.0052 26.4 7.4 93 31-185 150-249 (265)
396 COG2061 ACT-domain-containing 29.0 2.7E+02 0.0059 24.9 7.2 63 27-100 47-129 (170)
397 cd02809 alpha_hydroxyacid_oxid 28.9 4.8E+02 0.01 24.3 11.0 30 157-186 227-256 (299)
398 cd06358 PBP1_NHase Type I peri 28.8 4.4E+02 0.0096 24.0 9.1 56 41-109 148-210 (333)
399 PRK05282 (alpha)-aspartyl dipe 28.6 3.3E+02 0.0072 25.1 8.1 64 29-109 31-100 (233)
400 PRK07807 inosine 5-monophospha 28.5 1.6E+02 0.0034 30.1 6.5 58 81-184 236-294 (479)
401 PLN02535 glycolate oxidase 28.5 5.4E+02 0.012 25.4 10.0 96 37-188 207-310 (364)
402 PRK02083 imidazole glycerol ph 28.4 4.4E+02 0.0096 23.7 10.0 29 157-185 197-226 (253)
403 PRK15454 ethanol dehydrogenase 28.2 1.1E+02 0.0023 30.1 5.2 65 30-108 50-127 (395)
404 PRK10901 16S rRNA methyltransf 27.9 1.2E+02 0.0025 30.0 5.4 52 30-92 269-321 (427)
405 PRK05437 isopentenyl pyrophosp 27.9 5.6E+02 0.012 24.8 9.9 29 157-185 261-289 (352)
406 cd03816 GT1_ALG1_like This fam 27.8 5.6E+02 0.012 24.7 10.7 42 156-203 340-381 (415)
407 cd06273 PBP1_GntR_like_1 This 27.7 3.7E+02 0.008 23.1 8.0 20 42-61 18-37 (268)
408 PRK05742 nicotinate-nucleotide 27.4 3.2E+02 0.0069 25.9 8.0 65 59-185 196-260 (277)
409 cd08178 AAD_C C-terminal alcoh 27.4 1.2E+02 0.0025 29.6 5.2 65 30-108 22-99 (398)
410 PRK07589 ornithine cyclodeamin 27.3 1.8E+02 0.0039 28.3 6.4 40 30-69 155-194 (346)
411 PF09445 Methyltransf_15: RNA 27.2 4.3E+02 0.0093 23.2 9.4 71 30-111 22-113 (163)
412 PRK05653 fabG 3-ketoacyl-(acyl 27.2 2.3E+02 0.0049 24.0 6.4 61 28-93 4-64 (246)
413 cd06355 PBP1_FmdD_like Peripla 27.2 2.7E+02 0.0059 25.8 7.5 58 40-110 148-212 (348)
414 PRK07896 nicotinate-nucleotide 27.0 3.1E+02 0.0066 26.3 7.8 43 157-201 199-241 (289)
415 PRK07765 para-aminobenzoate sy 26.9 81 0.0018 28.2 3.7 33 30-62 1-33 (214)
416 COG1454 EutG Alcohol dehydroge 26.9 2.4E+02 0.0052 28.0 7.3 66 30-109 30-108 (377)
417 PF07279 DUF1442: Protein of u 26.8 3E+02 0.0065 25.6 7.4 62 31-107 71-137 (218)
418 cd08171 GlyDH-like2 Glycerol d 26.4 3.8E+02 0.0082 25.5 8.4 65 30-108 23-99 (345)
419 PRK08072 nicotinate-nucleotide 26.4 2.6E+02 0.0055 26.5 7.1 43 157-200 187-229 (277)
420 cd01840 SGNH_hydrolase_yrhL_li 26.4 3.6E+02 0.0078 22.0 8.1 70 32-107 2-73 (150)
421 PRK12738 kbaY tagatose-bisphos 26.4 2.7E+02 0.0058 26.6 7.3 66 60-183 155-229 (286)
422 cd06282 PBP1_GntR_like_2 Ligan 26.4 3.8E+02 0.0083 22.8 7.8 55 41-108 17-77 (266)
423 TIGR00089 RNA modification enz 26.3 4.2E+02 0.009 26.0 8.9 52 38-111 12-67 (429)
424 COG0300 DltE Short-chain dehyd 26.3 5.6E+02 0.012 24.2 9.4 77 26-108 3-80 (265)
425 COG0157 NadC Nicotinate-nucleo 26.2 3.4E+02 0.0073 26.2 7.9 34 167-200 196-229 (280)
426 PRK07428 nicotinate-nucleotide 26.1 3.5E+02 0.0077 25.8 8.1 105 84-201 130-238 (288)
427 PRK05718 keto-hydroxyglutarate 26.0 5E+02 0.011 23.5 9.2 32 158-189 107-138 (212)
428 PRK09016 quinolinate phosphori 25.9 3E+02 0.0066 26.5 7.6 43 157-201 208-250 (296)
429 cd08176 LPO Lactadehyde:propan 25.7 1.8E+02 0.004 28.0 6.2 63 31-107 30-105 (377)
430 PRK10624 L-1,2-propanediol oxi 25.7 1.2E+02 0.0026 29.3 5.0 63 31-107 32-107 (382)
431 PRK06106 nicotinate-nucleotide 25.5 6E+02 0.013 24.3 11.4 23 161-183 241-263 (281)
432 cd01825 SGNH_hydrolase_peri1 S 25.5 1.1E+02 0.0025 25.1 4.2 15 81-95 53-67 (189)
433 cd01568 QPRTase_NadC Quinolina 25.5 3.5E+02 0.0076 25.2 7.8 28 157-185 227-254 (269)
434 PRK14607 bifunctional glutamin 25.4 86 0.0019 32.1 4.0 29 31-59 1-30 (534)
435 TIGR01096 3A0103s03R lysine-ar 25.2 2.6E+02 0.0056 24.1 6.5 56 24-92 126-181 (250)
436 TIGR02371 ala_DH_arch alanine 25.2 1.8E+02 0.0038 27.7 5.9 38 30-67 154-191 (325)
437 cd08183 Fe-ADH2 Iron-containin 25.1 1.4E+02 0.0031 28.7 5.4 65 30-108 23-96 (374)
438 PRK06124 gluconate 5-dehydroge 25.0 2.9E+02 0.0064 23.9 6.9 75 27-108 9-84 (256)
439 PRK14326 (dimethylallyl)adenos 24.8 7.5E+02 0.016 25.2 10.8 97 36-200 24-128 (502)
440 PF13552 DUF4127: Protein of u 24.8 2.6E+02 0.0057 28.6 7.3 71 32-111 2-102 (497)
441 TIGR00078 nadC nicotinate-nucl 24.7 3.2E+02 0.007 25.5 7.4 43 158-201 178-220 (265)
442 PRK09522 bifunctional glutamin 24.7 1.1E+02 0.0023 31.7 4.5 32 30-61 2-33 (531)
443 cd01827 sialate_O-acetylestera 24.6 3.5E+02 0.0076 22.3 7.0 15 82-96 65-79 (188)
444 PRK05096 guanosine 5'-monophos 24.5 5E+02 0.011 25.8 8.9 29 83-111 121-150 (346)
445 PRK09860 putative alcohol dehy 24.4 1.7E+02 0.0038 28.4 5.8 64 31-108 33-109 (383)
446 PRK14722 flhF flagellar biosyn 24.3 6.4E+02 0.014 25.0 9.7 53 30-92 168-223 (374)
447 PLN02979 glycolate oxidase 24.2 7.2E+02 0.016 24.8 10.2 92 38-185 208-306 (366)
448 COG0503 Apt Adenine/guanine ph 24.0 1.3E+02 0.0029 26.3 4.5 32 28-59 115-149 (179)
449 PRK14723 flhF flagellar biosyn 24.0 6.9E+02 0.015 27.4 10.5 53 30-92 216-271 (767)
450 cd08190 HOT Hydroxyacid-oxoaci 24.0 1.6E+02 0.0035 28.9 5.5 63 31-107 25-100 (414)
451 COG0352 ThiE Thiamine monophos 23.9 4.7E+02 0.01 23.9 8.1 27 157-184 158-184 (211)
452 PRK05031 tRNA (uracil-5-)-meth 23.8 2.9E+02 0.0062 26.7 7.1 75 31-108 230-311 (362)
453 TIGR03590 PseG pseudaminic aci 23.8 1.9E+02 0.0042 26.6 5.7 52 46-111 46-104 (279)
454 PF00478 IMPDH: IMP dehydrogen 23.8 2.6E+02 0.0056 27.6 6.8 58 83-186 119-177 (352)
455 PF09456 RcsC: RcsC Alpha-Beta 23.7 1.7E+02 0.0038 23.5 4.7 40 37-94 7-46 (92)
456 PF13649 Methyltransf_25: Meth 23.7 1.8E+02 0.0039 21.9 4.7 65 28-105 23-89 (101)
457 cd02809 alpha_hydroxyacid_oxid 23.5 6.1E+02 0.013 23.7 9.5 27 158-185 173-199 (299)
458 TIGR03499 FlhF flagellar biosy 23.5 2.1E+02 0.0045 26.6 5.9 53 30-92 225-280 (282)
459 PRK03708 ppnK inorganic polyph 23.5 6.2E+02 0.013 23.7 10.5 32 30-61 1-37 (277)
460 TIGR01305 GMP_reduct_1 guanosi 23.4 7E+02 0.015 24.7 9.6 30 157-186 212-241 (343)
461 PF00977 His_biosynth: Histidi 23.4 3.5E+02 0.0076 24.3 7.2 29 157-185 191-219 (229)
462 PF13578 Methyltransf_24: Meth 23.4 1.3E+02 0.0029 22.9 3.9 64 30-108 24-90 (106)
463 TIGR00177 molyb_syn molybdenum 23.4 1.3E+02 0.0029 24.9 4.2 43 41-91 28-73 (144)
464 TIGR02667 moaB_proteo molybden 23.3 2.2E+02 0.0048 24.4 5.6 46 40-91 22-70 (163)
465 PRK12429 3-hydroxybutyrate deh 23.3 4.8E+02 0.01 22.4 8.4 73 29-108 4-77 (258)
466 PRK12825 fabG 3-ketoacyl-(acyl 23.3 4.5E+02 0.0098 22.1 8.7 75 27-108 4-80 (249)
467 cd02922 FCB2_FMN Flavocytochro 23.3 3.7E+02 0.008 26.2 7.7 28 157-185 213-240 (344)
468 PRK06801 hypothetical protein; 23.2 3.2E+02 0.007 26.0 7.2 27 157-183 203-230 (286)
469 PRK12939 short chain dehydroge 23.1 3.5E+02 0.0076 23.1 7.0 38 27-64 5-42 (250)
470 PRK06806 fructose-bisphosphate 23.1 3.9E+02 0.0085 25.2 7.7 29 157-185 200-229 (281)
471 cd06336 PBP1_ABC_ligand_bindin 23.1 6E+02 0.013 23.4 9.4 62 36-110 146-218 (347)
472 PRK13586 1-(5-phosphoribosyl)- 23.1 4.6E+02 0.01 23.9 8.0 27 159-185 191-217 (232)
473 cd02811 IDI-2_FMN Isopentenyl- 23.0 6.6E+02 0.014 23.9 9.5 29 157-185 255-283 (326)
474 cd06326 PBP1_STKc_like Type I 22.9 5.6E+02 0.012 23.0 10.9 13 97-109 178-190 (336)
475 PRK10415 tRNA-dihydrouridine s 22.9 6.6E+02 0.014 23.9 9.5 28 157-184 194-222 (321)
476 PRK00955 hypothetical protein; 22.9 8.9E+02 0.019 25.8 10.9 32 29-60 13-50 (620)
477 PRK00748 1-(5-phosphoribosyl)- 22.8 5.2E+02 0.011 22.6 8.1 31 157-187 74-104 (233)
478 cd06296 PBP1_CatR_like Ligand- 22.8 3E+02 0.0064 23.7 6.5 19 42-60 18-36 (270)
479 PRK07695 transcriptional regul 22.7 5.1E+02 0.011 22.4 8.9 27 157-184 149-175 (201)
480 cd06279 PBP1_LacI_like_3 Ligan 22.7 4E+02 0.0086 23.5 7.4 54 41-108 22-77 (283)
481 TIGR02995 ectoine_ehuB ectoine 22.7 2.2E+02 0.0047 25.5 5.8 48 29-92 144-194 (275)
482 PTZ00170 D-ribulose-5-phosphat 22.5 5.8E+02 0.012 23.0 8.5 11 99-109 52-62 (228)
483 TIGR02149 glgA_Coryne glycogen 22.5 6E+02 0.013 23.2 10.4 47 152-202 299-351 (388)
484 cd03794 GT1_wbuB_like This fam 22.5 5.2E+02 0.011 22.5 9.3 46 153-202 319-364 (394)
485 PRK13143 hisH imidazole glycer 22.4 1.8E+02 0.0038 25.5 5.0 32 30-61 1-32 (200)
486 PRK00771 signal recognition pa 22.3 7.2E+02 0.016 25.1 9.8 22 85-108 176-199 (437)
487 PRK01130 N-acetylmannosamine-6 22.2 5.4E+02 0.012 22.6 9.4 28 82-109 86-117 (221)
488 PRK13170 hisH imidazole glycer 22.2 1.8E+02 0.0038 25.6 4.9 34 30-63 1-34 (196)
489 TIGR00888 guaA_Nterm GMP synth 22.2 1.3E+02 0.0029 25.7 4.1 28 32-59 1-28 (188)
490 TIGR01815 TrpE-clade3 anthrani 22.1 1.7E+02 0.0036 31.5 5.5 36 27-62 514-549 (717)
491 PRK09776 putative diguanylate 22.1 3.6E+02 0.0078 29.0 8.1 95 44-193 978-1083(1092)
492 PRK06823 ornithine cyclodeamin 21.9 2.1E+02 0.0046 27.3 5.7 38 31-68 155-192 (315)
493 PRK08385 nicotinate-nucleotide 21.9 4.9E+02 0.011 24.8 8.1 105 83-202 117-225 (278)
494 cd08189 Fe-ADH5 Iron-containin 21.9 2.4E+02 0.0052 27.1 6.2 64 31-108 28-104 (374)
495 KOG2675 Adenylate cyclase-asso 21.8 1.9E+02 0.004 29.8 5.4 21 187-207 183-203 (480)
496 cd01748 GATase1_IGP_Synthase T 21.8 1.9E+02 0.004 25.1 5.0 32 32-63 1-32 (198)
497 cd08193 HVD 5-hydroxyvalerate 21.7 5.4E+02 0.012 24.7 8.5 65 30-108 27-104 (376)
498 PRK00726 murG undecaprenyldiph 21.7 6.3E+02 0.014 23.2 10.8 45 157-202 272-323 (357)
499 PF08241 Methyltransf_11: Meth 21.7 1.8E+02 0.0039 20.7 4.2 67 28-108 18-85 (95)
500 TIGR03407 urea_ABC_UrtA urea A 21.6 4E+02 0.0086 24.9 7.5 57 41-110 150-213 (359)
No 1
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.87 E-value=2.2e-21 Score=175.03 Aligned_cols=118 Identities=21% Similarity=0.360 Sum_probs=106.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
++||||||++..++.|..+|+..||+|..+.+|++|++.+ ... ||+||+|++||++||++++++||+.
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~-----------~~~-~dlviLD~~lP~~dG~~~~~~iR~~ 68 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAA-----------REQ-PDLVLLDLMLPDLDGLELCRRLRAK 68 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hcC-CCEEEEECCCCCCCHHHHHHHHHhh
Confidence 4899999999999999999999999999999999999998 566 9999999999999999999999953
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
. ...+|||++|+..+..+...++++|||||++||++
T Consensus 69 ~--------------------------------------------~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~ 104 (229)
T COG0745 69 K--------------------------------------------GSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFS 104 (229)
T ss_pred c--------------------------------------------CCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCC
Confidence 1 22689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 023816 190 LSDVKRIKDYLTRD 203 (276)
Q Consensus 190 ~~~L~~~~~~l~~~ 203 (276)
+.+|..-++.+.|.
T Consensus 105 ~~EL~ARi~a~lRR 118 (229)
T COG0745 105 PRELLARLRALLRR 118 (229)
T ss_pred HHHHHHHHHHHHCc
Confidence 99995555554443
No 2
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.85 E-value=1.3e-20 Score=185.79 Aligned_cols=125 Identities=33% Similarity=0.493 Sum_probs=114.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
..+||||||+...|+.++..|+..||.|..+.|+++|++.+ ....||+||+|+.||++||++++++|++
T Consensus 4 ~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i-----------~~~~~~lvl~Di~mp~~~Gl~ll~~i~~ 72 (464)
T COG2204 4 MARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEAL-----------SESPFDLVLLDIRMPGMDGLELLKEIKS 72 (464)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHH-----------hcCCCCEEEEecCCCCCchHHHHHHHHh
Confidence 45799999999999999999999999999999999999999 4447999999999999999999999999
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
..| .+|||++|++.+.+.+.+|++.||.|||.||+
T Consensus 73 ~~~---------------------------------------------~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~ 107 (464)
T COG2204 73 RDP---------------------------------------------DLPVIVMTGHGDIDTAVEALRLGAFDFLEKPF 107 (464)
T ss_pred hCC---------------------------------------------CCCEEEEeCCCCHHHHHHHHhcCcceeeeCCC
Confidence 888 89999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhcccc
Q 023816 189 KLSDVKRIKDYLTRDVNLGNE 209 (276)
Q Consensus 189 ~~~~L~~~~~~l~~~~~~~~~ 209 (276)
+.++|..++........+..+
T Consensus 108 ~~~~L~~~v~ral~~~~~~~e 128 (464)
T COG2204 108 DLDRLLAIVERALELRELQRE 128 (464)
T ss_pred CHHHHHHHHHHHHHHhhhhhh
Confidence 999997777776665555443
No 3
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.84 E-value=1.7e-20 Score=185.16 Aligned_cols=121 Identities=26% Similarity=0.495 Sum_probs=110.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHh--hCCCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLT--ISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~--~~g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
+.+||||||++..|+.|+.++. ..|++++. |.||+||++.+ ++..|||||+|+.||+|||+++++.
T Consensus 1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli-----------~e~~pDiviTDI~MP~mdGLdLI~~ 69 (475)
T COG4753 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELI-----------QETQPDIVITDINMPGMDGLDLIKA 69 (475)
T ss_pred CeeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHH-----------HhcCCCEEEEecCCCCCcHHHHHHH
Confidence 4689999999999999999995 66898775 99999999999 8889999999999999999999999
Q ss_pred HHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 106 IKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 106 Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
+++..| .+-+|++|++++-+.+.+|++.|+.|||.
T Consensus 70 ike~~p---------------------------------------------~~~~IILSGy~eFeYak~Am~lGV~dYLL 104 (475)
T COG4753 70 IKEQSP---------------------------------------------DTEFIILSGYDEFEYAKKAMKLGVKDYLL 104 (475)
T ss_pred HHHhCC---------------------------------------------CceEEEEeccchhHHHHHHHhcCchhhee
Confidence 999888 89999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhh
Q 023816 186 KPVKLSDVKRIKDYLTRDVN 205 (276)
Q Consensus 186 KPv~~~~L~~~~~~l~~~~~ 205 (276)
||++.++|..++..+.....
T Consensus 105 KP~~k~eL~~~L~ki~~kl~ 124 (475)
T COG4753 105 KPVDKAELEEALKKIIGKLE 124 (475)
T ss_pred CcCCHHHHHHHHHHHHHHHH
Confidence 99999999777666655443
No 4
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.84 E-value=8e-20 Score=140.51 Aligned_cols=110 Identities=33% Similarity=0.572 Sum_probs=104.0
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCC-EEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhC
Q 023816 32 VLAVDDSFVDRKVIERLLTISSC-KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTT 110 (276)
Q Consensus 32 VLIVdD~~~~~~~L~~~L~~~g~-~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~ 110 (276)
||||||++..++.++++|+..|+ ++..+.++.+|++.+ +...||+||+|+.||+++|.++++.||...
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~-----------~~~~~d~iiid~~~~~~~~~~~~~~i~~~~ 69 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELL-----------KKHPPDLIIIDLELPDGDGLELLEQIRQIN 69 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHH-----------HHSTESEEEEESSSSSSBHHHHHHHHHHHT
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHh-----------cccCceEEEEEeeecccccccccccccccc
Confidence 79999999999999999999999 999999999999999 567799999999999999999999999877
Q ss_pred CCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCH
Q 023816 111 PFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL 190 (276)
Q Consensus 111 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~ 190 (276)
+ .+|+|++|...+.....+++++|+++||.||++.
T Consensus 70 ~---------------------------------------------~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~ 104 (112)
T PF00072_consen 70 P---------------------------------------------SIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSP 104 (112)
T ss_dssp T---------------------------------------------TSEEEEEESSTSHHHHHHHHHTTESEEEESSSSH
T ss_pred c---------------------------------------------cccEEEecCCCCHHHHHHHHHCCCCEEEECCCCH
Confidence 6 8999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 023816 191 SDVKRIK 197 (276)
Q Consensus 191 ~~L~~~~ 197 (276)
++|.+.+
T Consensus 105 ~~l~~~i 111 (112)
T PF00072_consen 105 EELRAAI 111 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9996654
No 5
>PLN03029 type-a response regulator protein; Provisional
Probab=99.84 E-value=2.5e-19 Score=159.26 Aligned_cols=136 Identities=61% Similarity=1.000 Sum_probs=111.3
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccc---------cccCCCCCceeEEEEecCCC
Q 023816 25 SDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ---------SINGFDGLKVDLIITDYCMP 95 (276)
Q Consensus 25 ~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~---------~~~~~~~~~~DlIL~D~~mp 95 (276)
.....++||||||+...+..++++|+..||++..+.++.+|+..+...... .-+.-....+|+||+|++||
T Consensus 4 ~~~~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp 83 (222)
T PLN03029 4 TTESQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMP 83 (222)
T ss_pred CCCCCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCC
Confidence 345689999999999999999999999999999999999999988432100 00000233578999999999
Q ss_pred CCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHH
Q 023816 96 GMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRC 175 (276)
Q Consensus 96 ~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~a 175 (276)
+++|++++++|++... ...+|||++|+........++
T Consensus 84 ~~~G~e~l~~ir~~~~-------------------------------------------~~~ipvIils~~~~~~~~~~a 120 (222)
T PLN03029 84 GMTGYDLLKKIKESSS-------------------------------------------LRNIPVVIMSSENVPSRITRC 120 (222)
T ss_pred CCCHHHHHHHHHhccc-------------------------------------------cCCCcEEEEeCCCCHHHHHHH
Confidence 9999999999996321 236899999999999999999
Q ss_pred HhcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 023816 176 LEDGAEDFIVKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 176 l~~Ga~d~l~KPv~~~~L~~~~~~l~~~ 203 (276)
++.|+++||.||+...+|.+++..+.+.
T Consensus 121 l~~Ga~dyl~KP~~~~~L~~l~~~~~~~ 148 (222)
T PLN03029 121 LEEGAEEFFLKPVQLSDLNRLKPHMMKT 148 (222)
T ss_pred HHhCchheEECCCCHHHHHHHHHHHHHH
Confidence 9999999999999999997777665544
No 6
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.81 E-value=5.3e-19 Score=159.28 Aligned_cols=131 Identities=18% Similarity=0.358 Sum_probs=116.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 30 VHVLAVDDSFVDRKVIERLLTI-SSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~-~g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
++||||||++.+.++-+++++. .||.+. .+.++++|...+ ...+|||||+|+.||+.+|++++.+||
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i-----------~~~~pDLILLDiYmPd~~Gi~lL~~ir 69 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMII-----------EEFKPDLILLDIYMPDGNGIELLPELR 69 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHH-----------HhhCCCEEEEeeccCCCccHHHHHHHH
Confidence 5899999999999999999985 588766 599999999999 677899999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
..+. ++-||++|+-++.+.+.+|+..|+.|||.||
T Consensus 70 ~~~~---------------------------------------------~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKP 104 (224)
T COG4565 70 SQHY---------------------------------------------PVDVIVITAASDMETIKEALRYGVVDYLIKP 104 (224)
T ss_pred hcCC---------------------------------------------CCCEEEEeccchHHHHHHHHhcCchhheecc
Confidence 8776 8999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhccccccccchh
Q 023816 188 VKLSDVKRIKDYLTRDVNLGNEGRGINKR 216 (276)
Q Consensus 188 v~~~~L~~~~~~l~~~~~~~~~~~~~~~~ 216 (276)
|..+.+.+.++.+.+.+..-...+..+..
T Consensus 105 f~~eRl~~aL~~y~~~r~~l~~~~~~sQ~ 133 (224)
T COG4565 105 FTFERLQQALTRYRQKRHALESHQQLSQK 133 (224)
T ss_pred eeHHHHHHHHHHHHHHHHHHhhhcccCHH
Confidence 99999988888887776665554444443
No 7
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.80 E-value=2.8e-18 Score=134.81 Aligned_cols=116 Identities=35% Similarity=0.610 Sum_probs=101.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHH-HHHHHhcccccccccCCCCC-ceeEEEEecCCCCCCHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGR-RALQFLGLDEEQSINGFDGL-KVDLIITDYCMPGMTGYELLK 104 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~-~al~~l~~~~~~~~~~~~~~-~~DlIL~D~~mp~~~G~ell~ 104 (276)
+...+||+|||++..++.++..|...|+.+..+.+|. +|+..+ +.. .||+|++|+.||++||+++++
T Consensus 3 ~~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~-----------~~~~~~dlii~D~~mp~~~G~~~~~ 71 (130)
T COG0784 3 LSGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELL-----------RELPQPDLILLDINMPGMDGIELLR 71 (130)
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHH-----------HhCCCCCEEEEeCCCCCCCHHHHHH
Confidence 4578999999999999999999999999999999995 999999 566 599999999999999999999
Q ss_pred HHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 105 KIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 105 ~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
++|...+ .+|+|++|++........+++.|+++|+
T Consensus 72 ~l~~~~~---------------------------------------------~~pvv~~t~~~~~~~~~~~~~~g~~~~l 106 (130)
T COG0784 72 RLRARGP---------------------------------------------NIPVILLTAYADEADRERALAAGADDYL 106 (130)
T ss_pred HHHhCCC---------------------------------------------CCCEEEEEcCcCHHHHHHHHHcCCCeEE
Confidence 9997422 6788999999988877788999999999
Q ss_pred eCCCCHHH-HHHHHH
Q 023816 185 VKPVKLSD-VKRIKD 198 (276)
Q Consensus 185 ~KPv~~~~-L~~~~~ 198 (276)
.||+...+ +...+.
T Consensus 107 ~kP~~~~~~l~~~i~ 121 (130)
T COG0784 107 TKPIFLEEELLAALR 121 (130)
T ss_pred cCCCCcHHHHHHHHH
Confidence 99977666 544444
No 8
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.80 E-value=3.1e-19 Score=185.43 Aligned_cols=120 Identities=31% Similarity=0.493 Sum_probs=109.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
..+.+||+||||++++++...+|+..|++++.+.+|.||++.+. ..+.||+|+||+|||.|||+|+.++|
T Consensus 664 l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~----------~~~~y~~ifmD~qMP~mDG~e~~~~i 733 (786)
T KOG0519|consen 664 LTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLK----------PPHSYDVIFMDLQMPEMDGYEATREI 733 (786)
T ss_pred ccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcC----------CCCcccEEEEEcCCcccchHHHHHHH
Confidence 44789999999999999999999999999999999999999993 25789999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
|++.. -++|||+||+..+.+...+|++.|+|.||.|
T Consensus 734 rk~~~--------------------------------------------~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~K 769 (786)
T KOG0519|consen 734 RKKER--------------------------------------------WHLPIVALTADADPSTEEECLEVGMDGYLSK 769 (786)
T ss_pred HHhhc--------------------------------------------CCCCEEEEecCCcHHHHHHHHHhCCceEEcc
Confidence 98653 2799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 023816 187 PVKLSDVKRIKDYL 200 (276)
Q Consensus 187 Pv~~~~L~~~~~~l 200 (276)
|++.+.+..++.++
T Consensus 770 P~~~~~l~~~l~~~ 783 (786)
T KOG0519|consen 770 PFTLEKLVKILREF 783 (786)
T ss_pred cccHHHHHHHHHHH
Confidence 99988886665544
No 9
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.79 E-value=1.3e-18 Score=166.21 Aligned_cols=126 Identities=29% Similarity=0.489 Sum_probs=115.3
Q ss_pred CCCCCCCCCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCC
Q 023816 19 GFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT 98 (276)
Q Consensus 19 ~~~~~~~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~ 98 (276)
++.+...+...++||+|||.+.++..+..+|+..||.+..++||++|++.. .+..+|+||+|++||+|+
T Consensus 4 ~~~~~~~~~~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~-----------~~~~~dlvllD~~mp~md 72 (360)
T COG3437 4 SMQGKNEPDEKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLL-----------QEEPPDLVLLDVRMPEMD 72 (360)
T ss_pred ccCCCCCCcccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHh-----------cccCCceEEeeccCCCcc
Confidence 466777788899999999999999999999999999999999999999998 566799999999999999
Q ss_pred HHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhc
Q 023816 99 GYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLED 178 (276)
Q Consensus 99 G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~ 178 (276)
|+|++.+|++..| ..+.+||+++|+..+.....+|+++
T Consensus 73 g~ev~~~lk~~~p------------------------------------------~t~~ip~i~lT~~~d~~~~~~~~~~ 110 (360)
T COG3437 73 GAEVLNKLKAMSP------------------------------------------STRRIPVILLTAYADSEDRQRALEA 110 (360)
T ss_pred HHHHHHHHHhcCC------------------------------------------cccccceEEEeecCChHHHHHHHHh
Confidence 9999999998666 3458999999999999999999999
Q ss_pred CCCeEEeCCCCHHHHHHHH
Q 023816 179 GAEDFIVKPVKLSDVKRIK 197 (276)
Q Consensus 179 Ga~d~l~KPv~~~~L~~~~ 197 (276)
|++|||.||+++.+|...+
T Consensus 111 g~~dyl~KP~~~~~l~~rv 129 (360)
T COG3437 111 GADDYLSKPISPKELVARV 129 (360)
T ss_pred hHHHHhcCCCCHHHHHHHH
Confidence 9999999999999985444
No 10
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.77 E-value=1.2e-17 Score=148.51 Aligned_cols=118 Identities=29% Similarity=0.506 Sum_probs=108.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCC-CEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISS-CKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g-~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
++||||||++..|..++.+|...+ ++|+. +.||.++++.+ +...||+||+|+.||+++|++++++|+
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~-----------~~~~pdvvl~Dl~mP~~~G~e~~~~l~ 69 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLA-----------RELKPDVVLLDLSMPGMDGLEALKQLR 69 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHh-----------hhcCCCEEEEcCCCCCCChHHHHHHHH
Confidence 479999999999999999998766 88665 88899999997 788999999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
+..| +++||++|.+.+...+.+++++||++|+.|.
T Consensus 70 ~~~p---------------------------------------------~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~ 104 (211)
T COG2197 70 ARGP---------------------------------------------DIKVVVLTAHDDPAYVIRALRAGADGYLLKD 104 (211)
T ss_pred HHCC---------------------------------------------CCcEEEEeccCCHHHHHHHHHcCCCEEEeCC
Confidence 9888 8899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 023816 188 VKLSDVKRIKDYLTRD 203 (276)
Q Consensus 188 v~~~~L~~~~~~l~~~ 203 (276)
.+.+++.+.++.+...
T Consensus 105 ~~~~~l~~ai~~v~~G 120 (211)
T COG2197 105 ASPEELVEAIRAVAAG 120 (211)
T ss_pred CCHHHHHHHHHHHHCC
Confidence 9999997777766544
No 11
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.76 E-value=1e-17 Score=148.82 Aligned_cols=115 Identities=24% Similarity=0.327 Sum_probs=105.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
..-|.||||+...|+.+..+|...||++..+.++++.|+.. ....+-++|+|+.||+++|.|+..++++
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~-----------~~~~pGclllDvrMPg~sGlelq~~L~~ 72 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAA-----------PLDRPGCLLLDVRMPGMSGLELQDRLAE 72 (202)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhc-----------cCCCCCeEEEecCCCCCchHHHHHHHHh
Confidence 45688999999999999999999999999999999999886 5667999999999999999999999998
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
... ..|||++|++.+.....+|+++||.|||.||+
T Consensus 73 ~~~---------------------------------------------~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~ 107 (202)
T COG4566 73 RGI---------------------------------------------RLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPF 107 (202)
T ss_pred cCC---------------------------------------------CCCEEEEeCCCChHHHHHHHHcchhhHHhCCC
Confidence 766 89999999999999999999999999999999
Q ss_pred CHHHHHHHHHH
Q 023816 189 KLSDVKRIKDY 199 (276)
Q Consensus 189 ~~~~L~~~~~~ 199 (276)
+.+.|...+..
T Consensus 108 ~~q~Lldav~~ 118 (202)
T COG4566 108 SEQDLLDAVER 118 (202)
T ss_pred chHHHHHHHHH
Confidence 99998555444
No 12
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.75 E-value=6.1e-17 Score=142.05 Aligned_cols=120 Identities=15% Similarity=0.245 Sum_probs=107.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhh-CCCE-EEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTI-SSCK-VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~-~g~~-v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
+++||||||++..+..++.+|.. .++. +..+.++.+|++.+ ....||+||+|+.||+++|+++++.|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~-----------~~~~pdlvllD~~mp~~~gle~~~~l 72 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMI-----------ERFKPGLILLDNYLPDGRGINLLHEL 72 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-----------HhcCCCEEEEeCCCCCCcHHHHHHHH
Confidence 68999999999999999999986 4785 56799999999998 66789999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
+...+ +++||++|+..+.....++++.||++|+.|
T Consensus 73 ~~~~~---------------------------------------------~~~iivls~~~~~~~~~~al~~Ga~~yl~K 107 (225)
T PRK10046 73 VQAHY---------------------------------------------PGDVVFTTAASDMETVSEAVRCGVFDYLIK 107 (225)
T ss_pred HhcCC---------------------------------------------CCCEEEEEcCCCHHHHHHHHHcCccEEEEC
Confidence 97655 679999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 023816 187 PVKLSDVKRIKDYLTRDV 204 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~~~~ 204 (276)
|++.++|...+..+....
T Consensus 108 p~~~~~L~~~i~~~~~~~ 125 (225)
T PRK10046 108 PIAYERLGQTLTRFRQRK 125 (225)
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 999999977776655443
No 13
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.72 E-value=2.3e-16 Score=134.49 Aligned_cols=117 Identities=22% Similarity=0.411 Sum_probs=106.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
++||+|||+...+..+...|+..|+.+..+.++.+|+..+ ....||+|++|+.||+++|+++++.++..
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~-----------~~~~~dlvild~~l~~~~g~~l~~~lr~~ 69 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYL-----------NEHLPDIAIVDLGLPDEDGLSLIRRWRSN 69 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hhCCCCEEEEECCCCCCCHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999988 56689999999999999999999999975
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
.+ .+|+|++++..+.....++++.|++||+.||++
T Consensus 70 ~~---------------------------------------------~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~ 104 (223)
T PRK10816 70 DV---------------------------------------------SLPILVLTARESWQDKVEVLSAGADDYVTKPFH 104 (223)
T ss_pred CC---------------------------------------------CCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCC
Confidence 55 789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023816 190 LSDVKRIKDYLTR 202 (276)
Q Consensus 190 ~~~L~~~~~~l~~ 202 (276)
..++...+..+.+
T Consensus 105 ~~eL~~~i~~~~~ 117 (223)
T PRK10816 105 IEEVMARMQALMR 117 (223)
T ss_pred HHHHHHHHHHHHh
Confidence 9999665555544
No 14
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.72 E-value=2.9e-16 Score=133.73 Aligned_cols=116 Identities=25% Similarity=0.382 Sum_probs=104.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
.+||+|||++..+..+...|+..|+.+..+.++.+++..+ ....||+||+|+.||+++|++++++|++.
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~g~~~~~~lr~~ 70 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEA-----------ATRKPDLIILDLGLPDGDGIEFIRDLRQW 70 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 5899999999999999999999999999999999999887 56679999999999999999999999952
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
+ .+|+|++|+........++++.|++||+.||++
T Consensus 71 -~---------------------------------------------~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~ 104 (225)
T PRK10529 71 -S---------------------------------------------AIPVIVLSARSEESDKIAALDAGADDYLSKPFG 104 (225)
T ss_pred -C---------------------------------------------CCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCC
Confidence 2 589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023816 190 LSDVKRIKDYLTR 202 (276)
Q Consensus 190 ~~~L~~~~~~l~~ 202 (276)
.+++...+..+.+
T Consensus 105 ~~~l~~~i~~~~~ 117 (225)
T PRK10529 105 IGELQARLRVALR 117 (225)
T ss_pred HHHHHHHHHHHHh
Confidence 9999666655544
No 15
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.72 E-value=3.3e-16 Score=131.84 Aligned_cols=117 Identities=23% Similarity=0.386 Sum_probs=105.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
++||+|||+...+..+...|...|+.+..+.++.+++..+ ....||+|++|+.||+++|+++++.++..
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-----------~~~~~d~illd~~~~~~~g~~~~~~l~~~ 69 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALL-----------ESGHYSLVVLDLGLPDEDGLHLLRRWRQK 69 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------HhCCCCEEEEECCCCCCCHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999988 56679999999999999999999999975
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
.+ .+|+|++|+........++++.|++||+.||++
T Consensus 70 ~~---------------------------------------------~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~ 104 (222)
T PRK10643 70 KY---------------------------------------------TLPVLILTARDTLEDRVAGLDVGADDYLVKPFA 104 (222)
T ss_pred CC---------------------------------------------CCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCC
Confidence 55 689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023816 190 LSDVKRIKDYLTR 202 (276)
Q Consensus 190 ~~~L~~~~~~l~~ 202 (276)
.+++...+..+.+
T Consensus 105 ~~~l~~~i~~~~~ 117 (222)
T PRK10643 105 LEELHARIRALIR 117 (222)
T ss_pred HHHHHHHHHHHHh
Confidence 9999666655443
No 16
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.72 E-value=3.2e-16 Score=134.01 Aligned_cols=117 Identities=22% Similarity=0.410 Sum_probs=105.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
++||+|||++..+..+...|+..|+.+..+.++.++++.+ ....||+||+|+.||+++|+++++.+++.
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~~~~~~g~~~~~~lr~~ 69 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLA-----------MTGDYDLIILDIMLPDVNGWDIVRMLRSA 69 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hhCCCCEEEEECCCCCCCHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999987 56679999999999999999999999975
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
.+ .+|+|++|+........++++.|++||+.||++
T Consensus 70 ~~---------------------------------------------~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~ 104 (227)
T PRK09836 70 NK---------------------------------------------GMPILLLTALGTIEHRVKGLELGADDYLVKPFA 104 (227)
T ss_pred CC---------------------------------------------CCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCC
Confidence 55 789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023816 190 LSDVKRIKDYLTR 202 (276)
Q Consensus 190 ~~~L~~~~~~l~~ 202 (276)
.+++...+..+.+
T Consensus 105 ~~~l~~~i~~~~~ 117 (227)
T PRK09836 105 FAELLARVRTLLR 117 (227)
T ss_pred HHHHHHHHHHHHh
Confidence 9999665555443
No 17
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.72 E-value=1.7e-16 Score=167.14 Aligned_cols=120 Identities=26% Similarity=0.511 Sum_probs=110.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
...++||||||++.+++.+.++|+..||++..+.+|.+|++.+ ....||+||+|+.||+|+|+++++.|
T Consensus 799 ~~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l-----------~~~~~DlVl~D~~mP~mdG~el~~~i 867 (924)
T PRK10841 799 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-----------SKNHIDIVLTDVNMPNMDGYRLTQRL 867 (924)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------HhCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 3567999999999999999999999999999999999999999 56789999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
|+..+ .+|||++|+....+...+|++.|+++||.|
T Consensus 868 r~~~~---------------------------------------------~~pII~lTa~~~~~~~~~~~~aG~d~~L~K 902 (924)
T PRK10841 868 RQLGL---------------------------------------------TLPVIGVTANALAEEKQRCLEAGMDSCLSK 902 (924)
T ss_pred HhcCC---------------------------------------------CCCEEEEECCCCHHHHHHHHHCCCCEEEeC
Confidence 97555 689999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 023816 187 PVKLSDVKRIKDYLTR 202 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~~ 202 (276)
|++..+|.+.+..+.+
T Consensus 903 Pv~~~~L~~~L~~~~~ 918 (924)
T PRK10841 903 PVTLDVLKQTLTVYAE 918 (924)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999887776554
No 18
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.71 E-value=4.9e-16 Score=130.88 Aligned_cols=117 Identities=26% Similarity=0.416 Sum_probs=106.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
++||+|||++..+..+...|+..|+++..+.++.+++..+ ....||+||+|+.||+++|+++++.|+..
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~g~~~~~~i~~~ 69 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEAL-----------YSAPYDAVILDLTLPGMDGRDILREWREK 69 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------hhCCCCEEEEECCCCCCCHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999988 55679999999999999999999999976
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
.+ .+|+|++|+........++++.|+++|+.||++
T Consensus 70 ~~---------------------------------------------~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~ 104 (219)
T PRK10336 70 GQ---------------------------------------------REPVLILTARDALAERVEGLRLGADDYLCKPFA 104 (219)
T ss_pred CC---------------------------------------------CCcEEEEECCCCHHHHHHHHhCCCCeEEECCCC
Confidence 55 789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023816 190 LSDVKRIKDYLTR 202 (276)
Q Consensus 190 ~~~L~~~~~~l~~ 202 (276)
.+++...+..+.+
T Consensus 105 ~~~l~~~i~~~~~ 117 (219)
T PRK10336 105 LIEVAARLEALMR 117 (219)
T ss_pred HHHHHHHHHHHHh
Confidence 9999766665544
No 19
>PRK11173 two-component response regulator; Provisional
Probab=99.71 E-value=4.4e-16 Score=134.93 Aligned_cols=118 Identities=22% Similarity=0.397 Sum_probs=105.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
...+||+|||++..+..+...|+..|+.+..+.++.++++.+ ....||+||+|+.||+++|+++++.|+
T Consensus 2 ~~~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~g~~~~~~lr 70 (237)
T PRK11173 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQIL-----------SENDINLVIMDINLPGKNGLLLARELR 70 (237)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------hhCCCCEEEEcCCCCCCCHHHHHHHHh
Confidence 346899999999999999999999999999999999999988 566899999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
+. + .+|+|++++.........+++.|++||+.||
T Consensus 71 ~~-~---------------------------------------------~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP 104 (237)
T PRK11173 71 EQ-A---------------------------------------------NVALMFLTGRDNEVDKILGLEIGADDYITKP 104 (237)
T ss_pred cC-C---------------------------------------------CCCEEEEECCCCHHHHHHHHHCCCCEEEECC
Confidence 52 3 5899999999998889999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 023816 188 VKLSDVKRIKDYLTR 202 (276)
Q Consensus 188 v~~~~L~~~~~~l~~ 202 (276)
++..+|...+..+.+
T Consensus 105 ~~~~eL~~~i~~~l~ 119 (237)
T PRK11173 105 FNPRELTIRARNLLS 119 (237)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999655544443
No 20
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.71 E-value=6.3e-16 Score=130.62 Aligned_cols=118 Identities=24% Similarity=0.350 Sum_probs=106.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
.+++||+|||++..+..+...|...|+.+..+.++.+++..+ ....||+||+|+.||+++|+++++.|+
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvl~d~~~~~~~g~~~~~~l~ 70 (228)
T PRK11083 2 QQPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKL-----------RQQPPDLVILDVGLPDISGFELCRQLL 70 (228)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 357899999999999999999999999999999999999988 566799999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
...+ .+|+|++|+.........+++.|+++|+.||
T Consensus 71 ~~~~---------------------------------------------~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp 105 (228)
T PRK11083 71 AFHP---------------------------------------------ALPVIFLTARSDEVDRLVGLEIGADDYVAKP 105 (228)
T ss_pred hhCC---------------------------------------------CCCEEEEEcCCcHHHHHHHhhcCCCeEEECC
Confidence 7655 7899999999988888999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 023816 188 VKLSDVKRIKDYLT 201 (276)
Q Consensus 188 v~~~~L~~~~~~l~ 201 (276)
++.++|...+..+.
T Consensus 106 ~~~~~l~~~i~~~~ 119 (228)
T PRK11083 106 FSPREVAARVRTIL 119 (228)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999866555544
No 21
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.70 E-value=2.8e-16 Score=160.71 Aligned_cols=121 Identities=26% Similarity=0.404 Sum_probs=109.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
..+++||||||++.++..++.+|+..|+.+..+.+|++|++.+ ....||+||+|+.||++||+++++.|
T Consensus 665 ~~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~-----------~~~~~dlil~D~~mp~~~g~~~~~~l 733 (919)
T PRK11107 665 RLPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQA-----------KQRPFDLILMDIQMPGMDGIRACELI 733 (919)
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------HhCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 3468999999999999999999999999999999999999998 66789999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
|+... ...+|||++|+........+|++.|+++|+.|
T Consensus 734 r~~~~-------------------------------------------~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~K 770 (919)
T PRK11107 734 RQLPH-------------------------------------------NQNTPIIAVTAHAMAGERERLLSAGMDDYLAK 770 (919)
T ss_pred Hhccc-------------------------------------------CCCCCEEEEeCCCCHHHHHHHHHcCCCeEeeC
Confidence 96321 23689999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 023816 187 PVKLSDVKRIKDYLT 201 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~ 201 (276)
|++..+|.+.+..+.
T Consensus 771 P~~~~~L~~~l~~~~ 785 (919)
T PRK11107 771 PIDEAMLKQVLLRYK 785 (919)
T ss_pred CCCHHHHHHHHHHHc
Confidence 999999977776654
No 22
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.70 E-value=3.6e-16 Score=160.25 Aligned_cols=122 Identities=25% Similarity=0.418 Sum_probs=108.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
..++||||||++.+++.+.++|+..|+++..+.+|++|++.+ ....||+||+|++||+++|++++++||
T Consensus 689 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~-----------~~~~~dlil~D~~mp~~~G~~~~~~ir 757 (921)
T PRK15347 689 WQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELG-----------RQHRFDLVLMDIRMPGLDGLETTQLWR 757 (921)
T ss_pred ccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 357999999999999999999999999999999999999998 667899999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
+... .....+|||++|+........++++.|+++||.||
T Consensus 758 ~~~~-----------------------------------------~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP 796 (921)
T PRK15347 758 DDPN-----------------------------------------NLDPDCMIVALTANAAPEEIHRCKKAGMNHYLTKP 796 (921)
T ss_pred hchh-----------------------------------------hcCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEECC
Confidence 6321 01237899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 023816 188 VKLSDVKRIKDYLT 201 (276)
Q Consensus 188 v~~~~L~~~~~~l~ 201 (276)
++..+|...+..+.
T Consensus 797 ~~~~~L~~~l~~~~ 810 (921)
T PRK15347 797 VTLAQLARALELAA 810 (921)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999977776554
No 23
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.69 E-value=9.1e-16 Score=135.53 Aligned_cols=119 Identities=22% Similarity=0.297 Sum_probs=103.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 30 VHVLAVDDSFVDRKVIERLLTI-SSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~-~g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
++||||||++..+..+..+|.. .++.+. .+.++.++++.+.. ....||+||+|+.||+++|+++++.|+
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~DlvilD~~~p~~~G~eli~~l~ 72 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFN---------SDTPIDLILLDIYMQQENGLDLLPVLH 72 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---------cCCCCCEEEEecCCCCCCcHHHHHHHH
Confidence 6899999999999999999986 477655 68999999988721 135699999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
+..| .+|||++|+..+.....++++.|+++|+.||
T Consensus 73 ~~~~---------------------------------------------~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp 107 (239)
T PRK10430 73 EAGC---------------------------------------------KSDVIVISSAADAATIKDSLHYGVVDYLIKP 107 (239)
T ss_pred hhCC---------------------------------------------CCCEEEEECCCcHHHHHHHHHcCCCEEEeCC
Confidence 8666 7899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 023816 188 VKLSDVKRIKDYLTR 202 (276)
Q Consensus 188 v~~~~L~~~~~~l~~ 202 (276)
++.++|...+..+..
T Consensus 108 ~~~~~l~~~i~~~~~ 122 (239)
T PRK10430 108 FQASRFEEALTGWRQ 122 (239)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999777766543
No 24
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.69 E-value=1.3e-15 Score=131.50 Aligned_cols=118 Identities=21% Similarity=0.375 Sum_probs=107.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
..+||||||++..+..+...|...|+.+..+.+++++++.+ ....||+||+|+.||+++|+++++.|+.
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~g~~~~~~lr~ 73 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLL-----------TRESFHLMVLDLMLPGEDGLSICRRLRS 73 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 56899999999999999999999999999999999999988 5678999999999999999999999997
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
..+ .+|||++++.........+++.|++||+.||+
T Consensus 74 ~~~---------------------------------------------~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~ 108 (239)
T PRK09468 74 QNN---------------------------------------------PTPIIMLTAKGEEVDRIVGLEIGADDYLPKPF 108 (239)
T ss_pred cCC---------------------------------------------CCCEEEEECCCcHHHHHHHHhcCCCeEEECCC
Confidence 554 78999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 023816 189 KLSDVKRIKDYLTR 202 (276)
Q Consensus 189 ~~~~L~~~~~~l~~ 202 (276)
+.++|...+..+.+
T Consensus 109 ~~~~L~~~i~~~~~ 122 (239)
T PRK09468 109 NPRELLARIRAVLR 122 (239)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999666655443
No 25
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.69 E-value=5.6e-16 Score=152.05 Aligned_cols=123 Identities=30% Similarity=0.529 Sum_probs=110.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
.+.+||+|||+...++.++++|...|+++..+.++.+|+..+ .+..||+||+|+.||++||+++++++|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~-----------~e~~~dlil~d~~mp~~dg~el~~~lr 199 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQL-----------AELPPDLVLLDANMPDMDGLELCTRLR 199 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHH-----------hcCCCcEEEEecCCCccCHHHHHHHHh
Confidence 578999999999999999999999999999999999999999 667999999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
.... .+.+|||++++.++.....+|++.|++|||.||
T Consensus 200 ~~~~-------------------------------------------t~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kP 236 (435)
T COG3706 200 QLER-------------------------------------------TRDIPIILLSSKDDDELVVRAFELGVNDYITKP 236 (435)
T ss_pred cccc-------------------------------------------cccccEEEEecccchHHHHHHHHcCCcceEecC
Confidence 7443 368999999999999999999999999999999
Q ss_pred CCHHHH-HHHHHHHHHhh
Q 023816 188 VKLSDV-KRIKDYLTRDV 204 (276)
Q Consensus 188 v~~~~L-~~~~~~l~~~~ 204 (276)
+...++ .++.+.+.+..
T Consensus 237 i~~~~l~~Rl~~~l~~~~ 254 (435)
T COG3706 237 IEEGELRARLRRQLRRKR 254 (435)
T ss_pred CCHHHHHHHHHHHHHhhh
Confidence 997777 45444444443
No 26
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.69 E-value=1.4e-15 Score=129.32 Aligned_cols=117 Identities=23% Similarity=0.387 Sum_probs=104.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
..+||+|||+...+..+...|...|+.+..+.++.++++.+ ....||+|++|+.||+++|+++++.++.
T Consensus 2 ~~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~g~~~~~~lr~ 70 (221)
T PRK10766 2 SYHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIM-----------QNQHVDLILLDINLPGEDGLMLTRELRS 70 (221)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 35899999999999999999999999999999999999988 5667999999999999999999999996
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
. + .+|+|++++........++++.||+||+.||+
T Consensus 71 ~-~---------------------------------------------~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~ 104 (221)
T PRK10766 71 R-S---------------------------------------------TVGIILVTGRTDSIDRIVGLEMGADDYVTKPL 104 (221)
T ss_pred C-C---------------------------------------------CCCEEEEECCCcHHHHHHHHHcCCCcEEeCCC
Confidence 2 2 68999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 023816 189 KLSDVKRIKDYLTR 202 (276)
Q Consensus 189 ~~~~L~~~~~~l~~ 202 (276)
+..+|...+..+.+
T Consensus 105 ~~~~L~~~i~~~~~ 118 (221)
T PRK10766 105 ELRELLVRVKNLLW 118 (221)
T ss_pred CHHHHHHHHHHHHh
Confidence 99998655554443
No 27
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.69 E-value=1.3e-15 Score=131.83 Aligned_cols=116 Identities=22% Similarity=0.253 Sum_probs=103.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
.+||+|||++..+..+...|+..|+.+..+.++.++++.+ ....||+||+|+.||+++|+++++.|+..
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~-----------~~~~~dlvild~~l~~~~g~~~~~~ir~~ 70 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATI-----------LREQPDLVLLDIMLPGKDGMTICRDLRPK 70 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHH-----------hhCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4899999999999999999999999999999999999988 66789999999999999999999999962
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
. +.|+|++++........++++.|++||+.||++
T Consensus 71 ~----------------------------------------------~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~ 104 (240)
T PRK10701 71 W----------------------------------------------QGPIVLLTSLDSDMNHILALEMGACDYILKTTP 104 (240)
T ss_pred C----------------------------------------------CCCEEEEECCCCHHHHHHHHHcCCCEEEECCCC
Confidence 2 579999999888888889999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023816 190 LSDVKRIKDYLTR 202 (276)
Q Consensus 190 ~~~L~~~~~~l~~ 202 (276)
..++...+..+.+
T Consensus 105 ~~~l~~~i~~~l~ 117 (240)
T PRK10701 105 PAVLLARLRLHLR 117 (240)
T ss_pred HHHHHHHHHHHHh
Confidence 9998655554443
No 28
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.69 E-value=1.5e-15 Score=129.46 Aligned_cols=116 Identities=20% Similarity=0.259 Sum_probs=104.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC--CCHHHHHHHHHh
Q 023816 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG--MTGYELLKKIKV 108 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~--~~G~ell~~Ir~ 108 (276)
+||+|||+...+..+...|+..|+.+..+.++++++..+ ....||+|++|+.||+ .+|+++++.++.
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~~~g~~~~~~i~~ 70 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAF-----------RQRLPDLAIIDIGLGEEIDGGFMLCQDLRS 70 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHH-----------HhCCCCEEEEECCCCCCCCCHHHHHHHHHh
Confidence 699999999999999999999999999999999999988 5678999999999998 589999999997
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
..+ .+|+|++|+.........++++||++|+.||+
T Consensus 71 ~~~---------------------------------------------~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~ 105 (227)
T TIGR03787 71 LSA---------------------------------------------TLPIIFLTARDSDFDTVSGLRLGADDYLTKDI 105 (227)
T ss_pred cCC---------------------------------------------CCCEEEEECCCCHHHHHHHHhcCCCEEEECCC
Confidence 555 68999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 023816 189 KLSDVKRIKDYLTR 202 (276)
Q Consensus 189 ~~~~L~~~~~~l~~ 202 (276)
+..++...+..+.+
T Consensus 106 ~~~~l~~~i~~~~~ 119 (227)
T TIGR03787 106 SLPHLLARITALFR 119 (227)
T ss_pred CHHHHHHHHHHHHH
Confidence 99998665555444
No 29
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.69 E-value=5.6e-16 Score=159.47 Aligned_cols=121 Identities=17% Similarity=0.288 Sum_probs=109.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
..+.+||||||++.++..+..+|+..||+|..+.++.+|++.+. ....||+||+|++||+++|+++++.|
T Consensus 679 ~~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~----------~~~~~Dlvl~D~~mp~~~G~~~~~~l 748 (914)
T PRK11466 679 LDGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQ----------NSEPFAAALVDFDLPDYDGITLARQL 748 (914)
T ss_pred cCCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHH----------cCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 34679999999999999999999999999999999999999872 23468999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
|+..| .+|||++|+........++++.|+++||.|
T Consensus 749 r~~~~---------------------------------------------~~~ii~~t~~~~~~~~~~~~~~g~~~~l~K 783 (914)
T PRK11466 749 AQQYP---------------------------------------------SLVLIGFSAHVIDETLRQRTSSLFRGIIPK 783 (914)
T ss_pred HhhCC---------------------------------------------CCCEEEEeCCCchhhHHHHHhcCcCCEEeC
Confidence 98666 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 023816 187 PVKLSDVKRIKDYLTR 202 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~~ 202 (276)
|++.++|...+..+.+
T Consensus 784 P~~~~~L~~~i~~~~~ 799 (914)
T PRK11466 784 PVPREVLGQLLAHYLQ 799 (914)
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9999999877776654
No 30
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.68 E-value=1.8e-15 Score=129.60 Aligned_cols=119 Identities=26% Similarity=0.396 Sum_probs=105.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
.+||+|||++..+..+...|+..|+++..+.++.++++.+ ....||+||+|+.||+++|+++++.|++.
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~g~~~~~~l~~~ 71 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-----------NEPWPDLILLDWMLPGGSGIQFIKHLKRE 71 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hccCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 6799999999999999999999999999999999999988 56679999999999999999999999963
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
.. ...+|+|++|+..+.....+++++|+++|+.||++
T Consensus 72 ~~-------------------------------------------~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~ 108 (229)
T PRK10161 72 SM-------------------------------------------TRDIPVVMLTARGEEEDRVRGLETGADDYITKPFS 108 (229)
T ss_pred cc-------------------------------------------cCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCC
Confidence 21 12689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023816 190 LSDVKRIKDYLTR 202 (276)
Q Consensus 190 ~~~L~~~~~~l~~ 202 (276)
..+|...+..+.+
T Consensus 109 ~~~L~~~i~~~~~ 121 (229)
T PRK10161 109 PKELVARIKAVMR 121 (229)
T ss_pred HHHHHHHHHHHHh
Confidence 9999666665544
No 31
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.68 E-value=1.8e-15 Score=128.79 Aligned_cols=115 Identities=27% Similarity=0.424 Sum_probs=102.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
.+||+|||++..+..+...|+..|+.+..+.++.++++.+ . ..||+||+|+.||+++|+++++.|++.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~-~~~d~vl~d~~~~~~~g~~~~~~l~~~ 69 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-----------D-DSIDLLLLDVMMPKKNGIDTLKELRQT 69 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHh-----------h-cCCCEEEEeCCCCCCcHHHHHHHHHhc
Confidence 4899999999999999999999999999999999999977 4 369999999999999999999999963
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
. ++|+|++|+........++++.|+++|+.||++
T Consensus 70 ~----------------------------------------------~~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~ 103 (232)
T PRK10955 70 H----------------------------------------------QTPVIMLTARGSELDRVLGLELGADDYLPKPFN 103 (232)
T ss_pred C----------------------------------------------CCcEEEEECCCCHHHHHHHHHcCCCEEEcCCCC
Confidence 2 379999999999888899999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023816 190 LSDVKRIKDYLTR 202 (276)
Q Consensus 190 ~~~L~~~~~~l~~ 202 (276)
.+++...+..+.+
T Consensus 104 ~~~l~~~i~~~~~ 116 (232)
T PRK10955 104 DRELVARIRAILR 116 (232)
T ss_pred HHHHHHHHHHHHh
Confidence 9999666655544
No 32
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.68 E-value=1.8e-15 Score=127.36 Aligned_cols=120 Identities=27% Similarity=0.451 Sum_probs=105.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
..+||+|||++..+..+...|+..|+++..+.++++++..+ ....||+||+|+.||+++|+++++.|+.
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-----------~~~~~d~vi~d~~~~~~~g~~~~~~l~~ 70 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLI-----------NERGPDLILLDWMLPGTSGIELCRRLRR 70 (226)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHH-----------HhcCCCEEEEECCCCCCcHHHHHHHHHc
Confidence 36899999999999999999999999999999999999988 5667999999999999999999999986
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
..+ ...+|||++|+..+.....++++.|+++|+.||+
T Consensus 71 ~~~-------------------------------------------~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~ 107 (226)
T TIGR02154 71 RPE-------------------------------------------TRAIPIIMLTARGEEEDRVRGLETGADDYITKPF 107 (226)
T ss_pred ccc-------------------------------------------CCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCC
Confidence 421 1268999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 023816 189 KLSDVKRIKDYLTR 202 (276)
Q Consensus 189 ~~~~L~~~~~~l~~ 202 (276)
+.+++...+..+.+
T Consensus 108 ~~~~l~~~i~~~~~ 121 (226)
T TIGR02154 108 SPRELLARIKAVLR 121 (226)
T ss_pred CHHHHHHHHHHHhc
Confidence 99998666655543
No 33
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.68 E-value=7.5e-16 Score=158.94 Aligned_cols=124 Identities=25% Similarity=0.359 Sum_probs=110.3
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 26 ~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
..+..+||||||++.++..+.++|+..||+|..+.+|.+|++.+ ....||+||+|++||+++|+++++.
T Consensus 699 ~~~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlvl~D~~mp~~~g~~~~~~ 767 (968)
T TIGR02956 699 DLPPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECF-----------HQHAFDLALLDINLPDGDGVTLLQQ 767 (968)
T ss_pred cccccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------HCCCCCEEEECCCCCCCCHHHHHHH
Confidence 44566899999999999999999999999999999999999999 5678999999999999999999999
Q ss_pred HHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 106 IKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 106 Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
||...+. ...+|||++|+........++++.|+++|+.
T Consensus 768 ir~~~~~------------------------------------------~~~~pii~lta~~~~~~~~~~~~~G~~~~l~ 805 (968)
T TIGR02956 768 LRAIYGA------------------------------------------KNEVKFIAFSAHVFNEDVAQYLAAGFDGFLA 805 (968)
T ss_pred HHhCccc------------------------------------------cCCCeEEEEECCCCHHHHHHHHHCCCCEEEe
Confidence 9975440 0028999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 023816 186 KPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 186 KPv~~~~L~~~~~~l~~ 202 (276)
||++..+|...+..+..
T Consensus 806 KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 806 KPVVEEQLTAMIAVILA 822 (968)
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 99999999877766543
No 34
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.67 E-value=3.3e-15 Score=127.80 Aligned_cols=118 Identities=27% Similarity=0.477 Sum_probs=106.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
+.++||+|||++..+..+...|...|+.+..+.++.+++..+ ....||+||+|+.||+++|+++++.++
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~-----------~~~~~d~illd~~~~~~~g~~~~~~l~ 73 (240)
T CHL00148 5 SKEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLF-----------RKEQPDLVILDVMMPKLDGYGVCQEIR 73 (240)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 467999999999999999999999999999999999999988 566799999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
+. + .+|+|++|+........++++.|+++|+.||
T Consensus 74 ~~-~---------------------------------------------~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp 107 (240)
T CHL00148 74 KE-S---------------------------------------------DVPIIMLTALGDVSDRITGLELGADDYVVKP 107 (240)
T ss_pred hc-C---------------------------------------------CCcEEEEECCCCHHhHHHHHHCCCCEEEeCC
Confidence 63 3 6899999999999888999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 023816 188 VKLSDVKRIKDYLTR 202 (276)
Q Consensus 188 v~~~~L~~~~~~l~~ 202 (276)
++.++|...+..+.+
T Consensus 108 ~~~~~L~~~i~~~~~ 122 (240)
T CHL00148 108 FSPKELEARIRSVLR 122 (240)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999666655543
No 35
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.67 E-value=2.1e-15 Score=130.56 Aligned_cols=119 Identities=23% Similarity=0.328 Sum_probs=105.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCC-E-EEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC---CCHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSC-K-VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG---MTGYEL 102 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~-~-v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~---~~G~el 102 (276)
+.++||||||++..+..++..|+..++ . +..+.++.++++.+ ....||+||+|+.||+ .+|.++
T Consensus 2 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~-----------~~~~~DlvllD~~l~~~~~~~g~~~ 70 (216)
T PRK10840 2 NNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNL-----------PKLDAHVLITDLSMPGDKYGDGITL 70 (216)
T ss_pred CceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHH-----------HhCCCCEEEEeCcCCCCCCCCHHHH
Confidence 458999999999999999999987664 4 55689999999988 5667999999999999 599999
Q ss_pred HHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCe
Q 023816 103 LKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAED 182 (276)
Q Consensus 103 l~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d 182 (276)
+++|++..| .+|||++|+..+.....++++.|+++
T Consensus 71 ~~~l~~~~~---------------------------------------------~~~iIvls~~~~~~~~~~a~~~Ga~~ 105 (216)
T PRK10840 71 IKYIKRHFP---------------------------------------------SLSIIVLTMNNNPAILSAVLDLDIEG 105 (216)
T ss_pred HHHHHHHCC---------------------------------------------CCcEEEEEecCCHHHHHHHHHCCCeE
Confidence 999998776 78999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHHH
Q 023816 183 FIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 183 ~l~KPv~~~~L~~~~~~l~~ 202 (276)
|+.||.+.++|...+..+..
T Consensus 106 yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 106 IVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred EEECCCCHHHHHHHHHHHHC
Confidence 99999999999777766554
No 36
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.66 E-value=3.8e-15 Score=124.77 Aligned_cols=117 Identities=21% Similarity=0.367 Sum_probs=105.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
++||+|||++..+..+...|+..|+++. .+.++.++++.+ ....||+|++|+.||+++|+++++.++.
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-----------~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 69 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRV-----------ETLKPDIVIIDVDIPGVNGIQVLETLRK 69 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHH-----------HccCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 4799999999999999999999999987 699999999988 5667999999999999999999999997
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
..+ ..|+|++++........++++.|+++|+.||+
T Consensus 70 ~~~---------------------------------------------~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~ 104 (204)
T PRK09958 70 RQY---------------------------------------------SGIIIIVSAKNDHFYGKHCADAGANGFVSKKE 104 (204)
T ss_pred hCC---------------------------------------------CCeEEEEeCCCCHHHHHHHHHCCCCEEEecCC
Confidence 655 67899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 023816 189 KLSDVKRIKDYLTR 202 (276)
Q Consensus 189 ~~~~L~~~~~~l~~ 202 (276)
+.+++...+..+.+
T Consensus 105 ~~~~l~~~i~~~~~ 118 (204)
T PRK09958 105 GMNNIIAAIEAAKN 118 (204)
T ss_pred CHHHHHHHHHHHHc
Confidence 99999777766654
No 37
>PRK09483 response regulator; Provisional
Probab=99.66 E-value=3.7e-15 Score=125.95 Aligned_cols=118 Identities=25% Similarity=0.367 Sum_probs=106.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTIS-SCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~-g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
+++||||||++..+..++.+|+.. |+++. .+.+++++++.+ ....||+||+|+.+|+++|+++++.|
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvi~d~~~~~~~g~~~~~~l 69 (217)
T PRK09483 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWC-----------RTNAVDVVLMDMNMPGIGGLEATRKI 69 (217)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 368999999999999999999874 88876 689999999988 56689999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
++..| .+|+|++|.........+++..|+++|+.|
T Consensus 70 ~~~~~---------------------------------------------~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k 104 (217)
T PRK09483 70 LRYTP---------------------------------------------DVKIIMLTVHTENPLPAKVMQAGAAGYLSK 104 (217)
T ss_pred HHHCC---------------------------------------------CCeEEEEeCCCCHHHHHHHHHcCCCEEEeC
Confidence 98766 789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 023816 187 PVKLSDVKRIKDYLTR 202 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~~ 202 (276)
|++.+++...+..+.+
T Consensus 105 ~~~~~~l~~~i~~~~~ 120 (217)
T PRK09483 105 GAAPQEVVSAIRSVHS 120 (217)
T ss_pred CCCHHHHHHHHHHHHC
Confidence 9999999777766654
No 38
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.66 E-value=4.5e-15 Score=125.66 Aligned_cols=115 Identities=24% Similarity=0.443 Sum_probs=103.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
++||+|||++..+..+...|+..|+.+..+.++.+++..+ ....||+|++|+.||+++|+++++.+++.
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~-----------~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 69 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLA-----------LKDDYALIILDIMLPGMDGWQILQTLRTA 69 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hcCCCCEEEEECCCCCCCHHHHHHHHHcC
Confidence 4799999999999999999999999999999999999988 56679999999999999999999999852
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
+ .+|+|++++........++++.||++|+.||++
T Consensus 70 -~---------------------------------------------~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~ 103 (223)
T PRK11517 70 -K---------------------------------------------QTPVICLTARDSVDDRVRGLDSGANDYLVKPFS 103 (223)
T ss_pred -C---------------------------------------------CCCEEEEECCCCHHHHHHHHhcCCCEEEECCCC
Confidence 2 589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 023816 190 LSDVKRIKDYLT 201 (276)
Q Consensus 190 ~~~L~~~~~~l~ 201 (276)
.+++...+..+.
T Consensus 104 ~~~l~~~i~~~~ 115 (223)
T PRK11517 104 FSELLARVRAQL 115 (223)
T ss_pred HHHHHHHHHHHH
Confidence 999866555444
No 39
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.66 E-value=4.3e-15 Score=129.60 Aligned_cols=115 Identities=30% Similarity=0.443 Sum_probs=101.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhC
Q 023816 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTT 110 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~ 110 (276)
+||+|||++..+..+...|+..|+.+..+.++.++++.+ ....||+||+|+.||+++|+++++.|+..
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvi~d~~l~~~~g~~l~~~i~~~- 70 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVL-----------ASETVDVVVVDLNLGREDGLEIVRSLATK- 70 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------hhCCCCEEEEeCCCCCCCHHHHHHHHHhc-
Confidence 799999999999999999999999999999999999988 66789999999999999999999999852
Q ss_pred CCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCC-CHHHHHHHHhcCCCeEEeCCCC
Q 023816 111 PFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSEN-ILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 111 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~-~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
+ .+|+|++|+.. ......++++.||++|+.||++
T Consensus 71 ~---------------------------------------------~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~ 105 (241)
T PRK13856 71 S---------------------------------------------DVPIIIISGDRLEEADKVVALELGATDFIAKPFG 105 (241)
T ss_pred C---------------------------------------------CCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCC
Confidence 2 58999999854 5667789999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023816 190 LSDVKRIKDYLTR 202 (276)
Q Consensus 190 ~~~L~~~~~~l~~ 202 (276)
..+|...+..+.+
T Consensus 106 ~~eL~~~i~~~l~ 118 (241)
T PRK13856 106 TREFLARIRVALR 118 (241)
T ss_pred HHHHHHHHHHHHh
Confidence 9998655554443
No 40
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.65 E-value=5.3e-15 Score=124.17 Aligned_cols=114 Identities=28% Similarity=0.473 Sum_probs=103.6
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCC
Q 023816 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTP 111 (276)
Q Consensus 32 VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p 111 (276)
||+|||++..+..+...|...|+.+..+.++.+++..+ ....||+|++|+.||+++|+++++.++...+
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvl~d~~~~~~~g~~~~~~l~~~~~ 69 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLA-----------LKDDYDLIILDVMLPGMDGWQILQTLRRSGK 69 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHHccCC
Confidence 58999999999999999999999999999999999988 5667999999999999999999999997555
Q ss_pred CCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHH
Q 023816 112 FNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLS 191 (276)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~ 191 (276)
.+|||++++........+++++|+++|+.||++.+
T Consensus 70 ---------------------------------------------~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~ 104 (218)
T TIGR01387 70 ---------------------------------------------QTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFS 104 (218)
T ss_pred ---------------------------------------------CCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHH
Confidence 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 023816 192 DVKRIKDYLT 201 (276)
Q Consensus 192 ~L~~~~~~l~ 201 (276)
++...+..+.
T Consensus 105 ~l~~~i~~~~ 114 (218)
T TIGR01387 105 ELLARVRTLL 114 (218)
T ss_pred HHHHHHHHHh
Confidence 9866555544
No 41
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.65 E-value=2.4e-15 Score=153.13 Aligned_cols=120 Identities=21% Similarity=0.395 Sum_probs=104.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
...++||||||++.++..+..+|+..||.+..+.+|++|++.+ ....||+||+|+.||+++|++++++|
T Consensus 523 ~~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~-----------~~~~~Dlvl~D~~mp~~~G~e~~~~i 591 (779)
T PRK11091 523 LPALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMF-----------DPDEYDLVLLDIQLPDMTGLDIAREL 591 (779)
T ss_pred ccccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHh-----------hcCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 4468999999999999999999999999999999999999998 66789999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCC-CeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALRE-IPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
|+..+ ... +|||++|++... ...++++.|+++||.
T Consensus 592 r~~~~-------------------------------------------~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~ 627 (779)
T PRK11091 592 RERYP-------------------------------------------REDLPPLVALTANVLK-DKKEYLDAGMDDVLS 627 (779)
T ss_pred Hhccc-------------------------------------------cCCCCcEEEEECCchH-hHHHHHHCCCCEEEE
Confidence 97442 013 488999987654 467899999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 023816 186 KPVKLSDVKRIKDYLT 201 (276)
Q Consensus 186 KPv~~~~L~~~~~~l~ 201 (276)
||++..+|...+..+.
T Consensus 628 KP~~~~~L~~~l~~~~ 643 (779)
T PRK11091 628 KPLSVPALTAMIKKFW 643 (779)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999977776654
No 42
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.65 E-value=5.1e-15 Score=131.70 Aligned_cols=119 Identities=19% Similarity=0.315 Sum_probs=103.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTIS-SCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~-g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
+++||+|||++..+..+...|... ++.+. .+.++.++++.+ ....||+||+|+.||+++|+++++.|
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l-----------~~~~~DlvllD~~mp~~dG~~~l~~i 70 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELI-----------KEQQPDVVVLDIIMPHLDGIGVLEKL 70 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 579999999999999999999854 56655 699999999998 56789999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
++..+ ...+|+|++|+........++++.|+++|+.|
T Consensus 71 ~~~~~-------------------------------------------~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~K 107 (262)
T TIGR02875 71 NEIEL-------------------------------------------SARPRVIMLSAFGQEKITQRAVALGADYYVLK 107 (262)
T ss_pred Hhhcc-------------------------------------------ccCCeEEEEeCCCCHHHHHHHHHCCCCEEEEC
Confidence 97543 11379999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 023816 187 PVKLSDVKRIKDYLT 201 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~ 201 (276)
|++.++|...+..+.
T Consensus 108 P~~~~~L~~~i~~~~ 122 (262)
T TIGR02875 108 PFDLEILAARIRQLA 122 (262)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999966665543
No 43
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.65 E-value=9.1e-15 Score=122.07 Aligned_cols=120 Identities=27% Similarity=0.398 Sum_probs=105.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTIS-SCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~-g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~ 104 (276)
|++.+||+|||++..+..++..|... ++.+. .+.++.+++..+ ....||+|++|+.||+++|.++++
T Consensus 1 ~~~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~g~~~~~ 69 (210)
T PRK09935 1 MKPASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYL-----------RTRPVDLIIMDIDLPGTDGFTFLK 69 (210)
T ss_pred CCcceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHH
Confidence 35789999999999999999999876 57876 588999999887 566899999999999999999999
Q ss_pred HHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 105 KIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 105 ~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
.++...| .+|||++|+........++++.|+++|+
T Consensus 70 ~l~~~~~---------------------------------------------~~~ii~ls~~~~~~~~~~~~~~g~~~~l 104 (210)
T PRK09935 70 RIKQIQS---------------------------------------------TVKVLFLSSKSECFYAGRAIQAGANGFV 104 (210)
T ss_pred HHHHhCC---------------------------------------------CCcEEEEECCCcHHHHHHHHHcCCCEEE
Confidence 9997666 6899999999998899999999999999
Q ss_pred eCCCCHHHHHHHHHHHHH
Q 023816 185 VKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 185 ~KPv~~~~L~~~~~~l~~ 202 (276)
.||++..+|...+..+..
T Consensus 105 ~kp~~~~~l~~~i~~~l~ 122 (210)
T PRK09935 105 SKCNDQNDIFHAVQMILS 122 (210)
T ss_pred eCCCCHHHHHHHHHHHHc
Confidence 999999999776665543
No 44
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.65 E-value=5.7e-15 Score=142.78 Aligned_cols=118 Identities=31% Similarity=0.467 Sum_probs=107.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
.+.+||||||++..+..+++.|+..|+.+..+.++.+|+..+ ....||+||+|+.||+++|+++++.|+
T Consensus 2 ~~~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l-----------~~~~~DlvllD~~lp~~dgl~~l~~ir 70 (469)
T PRK10923 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEAL-----------ASKTPDVLLSDIRMPGMDGLALLKQIK 70 (469)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------hcCCCCEEEECCCCCCCCHHHHHHHHH
Confidence 346899999999999999999999999999999999999998 667899999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
+..+ .+|+|++|++.......++++.|+.+|+.||
T Consensus 71 ~~~~---------------------------------------------~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP 105 (469)
T PRK10923 71 QRHP---------------------------------------------MLPVIIMTAHSDLDAAVSAYQQGAFDYLPKP 105 (469)
T ss_pred hhCC---------------------------------------------CCeEEEEECCCCHHHHHHHHhcCcceEEecC
Confidence 7666 7899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 023816 188 VKLSDVKRIKDYLT 201 (276)
Q Consensus 188 v~~~~L~~~~~~l~ 201 (276)
++.+++...+..+.
T Consensus 106 ~~~~~L~~~i~~~l 119 (469)
T PRK10923 106 FDIDEAVALVERAI 119 (469)
T ss_pred CcHHHHHHHHHHHH
Confidence 99999876665544
No 45
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.64 E-value=8.2e-16 Score=144.63 Aligned_cols=120 Identities=26% Similarity=0.406 Sum_probs=108.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
++|+||||+....+.|..+|++.|+.+..++...+|+..+ ...+||||++|+.||+|||+|+++++|..
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~L-----------e~~kpDLifldI~mp~~ngiefaeQvr~i 69 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLL-----------EVFKPDLIFLDIVMPYMNGIEFAEQVRDI 69 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHH-----------HhcCCCEEEEEeecCCccHHHHHHHHHHh
Confidence 4799999999999999999999998899999999999999 78899999999999999999999999987
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
.+ .+|||++|++.. ....+...-+.|||.|||+
T Consensus 70 ~~---------------------------------------------~v~iifIssh~e--ya~dsf~~n~~dYl~KPvt 102 (361)
T COG3947 70 ES---------------------------------------------AVPIIFISSHAE--YADDSFGMNLDDYLPKPVT 102 (361)
T ss_pred hc---------------------------------------------cCcEEEEecchh--hhhhhcccchHhhccCCCC
Confidence 77 899999999875 4556667778999999999
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 023816 190 LSDVKRIKDYLTRDVNLG 207 (276)
Q Consensus 190 ~~~L~~~~~~l~~~~~~~ 207 (276)
.+.|.+.+++..+.....
T Consensus 103 ~ekLnraIdr~~k~ve~~ 120 (361)
T COG3947 103 PEKLNRAIDRRLKRVELT 120 (361)
T ss_pred HHHHHHHHHHHhcccccc
Confidence 999999998887665543
No 46
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.64 E-value=2.4e-15 Score=140.31 Aligned_cols=118 Identities=20% Similarity=0.331 Sum_probs=103.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
....+||+|||++..++.+.++|.. .+.+..+.++++|+..+ ...+||+||+|+.||+++|++++++|
T Consensus 153 ~~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~-----------~~~~~d~vi~d~~~p~~~g~~l~~~i 220 (457)
T PRK09581 153 DEDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNA-----------AETNYDLVIVSANFENYDPLRLCSQL 220 (457)
T ss_pred ccCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhc-----------ccCCCCEEEecCCCCCchHhHHHHHH
Confidence 3467899999999999999999964 57777899999999987 67889999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
++... ...+|||++|++.+.....+|++.|+.||+.|
T Consensus 221 ~~~~~-------------------------------------------~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~k 257 (457)
T PRK09581 221 RSKER-------------------------------------------TRYVPILLLVDEDDDPRLVKALELGVNDYLMR 257 (457)
T ss_pred Hhccc-------------------------------------------cCCCcEEEEeCCCChHHHHHHHHccchhhhhC
Confidence 96331 12799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHH
Q 023816 187 PVKLSDVKRIKDY 199 (276)
Q Consensus 187 Pv~~~~L~~~~~~ 199 (276)
|++.++|...+..
T Consensus 258 p~~~~~l~~~i~~ 270 (457)
T PRK09581 258 PIDKNELLARVRT 270 (457)
T ss_pred CCcHHHHHHHHHH
Confidence 9999998554443
No 47
>PRK14084 two-component response regulator; Provisional
Probab=99.63 E-value=8.8e-15 Score=128.27 Aligned_cols=115 Identities=20% Similarity=0.288 Sum_probs=98.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCC-C-EEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISS-C-KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g-~-~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
++||||||++..+..++.+|+..+ + .+..+.++++++..+ .+..||+|++|+.||+++|+++++.|+
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~-----------~~~~~dlv~lDi~m~~~~G~~~~~~i~ 69 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEAL-----------LINQYDIIFLDINLMDESGIELAAKIQ 69 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 589999999999999999998765 4 466799999999988 556799999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
...+ ..+||++|++.. ...++++.|+.+|+.||
T Consensus 70 ~~~~---------------------------------------------~~~iI~~t~~~~--~~~~~~~~~~~~yl~KP 102 (246)
T PRK14084 70 KMKE---------------------------------------------PPAIIFATAHDQ--FAVKAFELNATDYILKP 102 (246)
T ss_pred hcCC---------------------------------------------CCEEEEEecChH--HHHHHHhcCCcEEEECC
Confidence 7554 578888887654 56689999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 023816 188 VKLSDVKRIKDYLTR 202 (276)
Q Consensus 188 v~~~~L~~~~~~l~~ 202 (276)
++.++|.+.+..+.+
T Consensus 103 ~~~~~l~~~l~~~~~ 117 (246)
T PRK14084 103 FEQKRIEQAVNKVRA 117 (246)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999777766643
No 48
>PRK15115 response regulator GlrR; Provisional
Probab=99.63 E-value=6e-15 Score=141.48 Aligned_cols=120 Identities=29% Similarity=0.436 Sum_probs=109.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
....+||||||++..+..+...|+..||.+..+.++.+|+..+ ....||+||+|+.||+++|+++++.+
T Consensus 3 ~~~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l-----------~~~~~dlvilD~~lp~~~g~~ll~~l 71 (444)
T PRK15115 3 RKPAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVL-----------NREKVDLVISDLRMDEMDGMQLFAEI 71 (444)
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------hcCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 3468999999999999999999999999999999999999988 56789999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
++..+ .+|||++|+........++++.|+.||+.|
T Consensus 72 ~~~~~---------------------------------------------~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~K 106 (444)
T PRK15115 72 QKVQP---------------------------------------------GMPVIILTAHGSIPDAVAATQQGVFSFLTK 106 (444)
T ss_pred HhcCC---------------------------------------------CCcEEEEECCCCHHHHHHHHhcChhhhccC
Confidence 97665 789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 023816 187 PVKLSDVKRIKDYLTR 202 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~~ 202 (276)
|++.++|...+..+.+
T Consensus 107 P~~~~~L~~~l~~~~~ 122 (444)
T PRK15115 107 PVDRDALYKAIDDALE 122 (444)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999766665544
No 49
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.63 E-value=7.5e-15 Score=140.84 Aligned_cols=117 Identities=24% Similarity=0.440 Sum_probs=107.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
..+||||||++..+..+...|+..|+++..+.++.+|+..+ ....||+||+|+.||+++|+++++.++.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l-----------~~~~~dlillD~~~p~~~g~~ll~~i~~ 72 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-----------ADIHPDVVLMDIRMPEMDGIKALKEMRS 72 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 55899999999999999999999999999999999999998 5667999999999999999999999997
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
..+ .+|||++|+..+.....++++.|++||+.||+
T Consensus 73 ~~~---------------------------------------------~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~ 107 (457)
T PRK11361 73 HET---------------------------------------------RTPVILMTAYAEVETAVEALRCGAFDYVIKPF 107 (457)
T ss_pred cCC---------------------------------------------CCCEEEEeCCCCHHHHHHHHHCCccEEEeccc
Confidence 655 78999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH
Q 023816 189 KLSDVKRIKDYLT 201 (276)
Q Consensus 189 ~~~~L~~~~~~l~ 201 (276)
+.+++...+..+.
T Consensus 108 ~~~~L~~~i~~~l 120 (457)
T PRK11361 108 DLDELNLIVQRAL 120 (457)
T ss_pred CHHHHHHHHhhhc
Confidence 9999876665543
No 50
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.63 E-value=5.7e-15 Score=140.79 Aligned_cols=117 Identities=29% Similarity=0.498 Sum_probs=107.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
..++||||||+...+..++..|+..|+++..+.++.+++..+ ....||+||+|+.||+++|+++++.|+
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l-----------~~~~~DlvilD~~m~~~~G~~~~~~ir 72 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQV-----------REQVFDLVLCDVRMAEMDGIATLKEIK 72 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 368999999999999999999999999999999999999988 566799999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
+..+ .+|||++|++.......++++.|+.+|+.||
T Consensus 73 ~~~~---------------------------------------------~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp 107 (441)
T PRK10365 73 ALNP---------------------------------------------AIPVLIMTAYSSVETAVEALKTGALDYLIKP 107 (441)
T ss_pred hhCC---------------------------------------------CCeEEEEECCCCHHHHHHHHHhhhHHHhcCC
Confidence 8666 7899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 023816 188 VKLSDVKRIKDYL 200 (276)
Q Consensus 188 v~~~~L~~~~~~l 200 (276)
++.++|...+...
T Consensus 108 ~~~~~L~~~l~~~ 120 (441)
T PRK10365 108 LDFDNLQATLEKA 120 (441)
T ss_pred CCHHHHHHHHHHH
Confidence 9999986665544
No 51
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.63 E-value=8.2e-15 Score=155.45 Aligned_cols=117 Identities=26% Similarity=0.410 Sum_probs=108.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
..+||||||++.++..+..+|+..|+++..+.++.+|++.+ ....||+||+|++||+++|+++++.|+.
T Consensus 958 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~dlil~D~~mp~~~g~~~~~~i~~ 1026 (1197)
T PRK09959 958 KLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKV-----------SMQHYDLLITDVNMPNMDGFELTRKLRE 1026 (1197)
T ss_pred CceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHh-----------hcCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 57899999999999999999999999999999999999998 6778999999999999999999999997
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
..+ .+|||++|+........++++.|+++||.||+
T Consensus 1027 ~~~---------------------------------------------~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~ 1061 (1197)
T PRK09959 1027 QNS---------------------------------------------SLPIWGLTANAQANEREKGLSCGMNLCLFKPL 1061 (1197)
T ss_pred cCC---------------------------------------------CCCEEEEECCCCHHHHHHHHHCCCCEEEeCCC
Confidence 555 68999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH
Q 023816 189 KLSDVKRIKDYLT 201 (276)
Q Consensus 189 ~~~~L~~~~~~l~ 201 (276)
+.++|.+.+..+.
T Consensus 1062 ~~~~L~~~l~~~~ 1074 (1197)
T PRK09959 1062 TLDVLKTHLSQLH 1074 (1197)
T ss_pred CHHHHHHHHHHHh
Confidence 9999977776554
No 52
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.61 E-value=2.3e-14 Score=119.39 Aligned_cols=114 Identities=26% Similarity=0.436 Sum_probs=100.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhC-CCE-EEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 30 VHVLAVDDSFVDRKVIERLLTIS-SCK-VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~-g~~-v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
++||||||++..+..++..|... ++. +..+.++.++++.+ .+..||+||+|+.||+++|+++++.++
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~dlvi~d~~~~~~~g~~~~~~l~ 70 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGL-----------PGRGVQVCICDISMPDISGLELLSQLP 70 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHc
Confidence 68999999999999999999754 665 45789999999998 667899999999999999999999886
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
. .+|||++++........++++.|+++|+.||
T Consensus 71 ~------------------------------------------------~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp 102 (196)
T PRK10360 71 K------------------------------------------------GMATIMLSVHDSPALVEQALNAGARGFLSKR 102 (196)
T ss_pred c------------------------------------------------CCCEEEEECCCCHHHHHHHHHcCCcEEEECC
Confidence 2 5789999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 023816 188 VKLSDVKRIKDYLTR 202 (276)
Q Consensus 188 v~~~~L~~~~~~l~~ 202 (276)
++.+++...+..+.+
T Consensus 103 ~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 103 CSPDELIAAVHTVAT 117 (196)
T ss_pred CCHHHHHHHHHHHHc
Confidence 999999777666554
No 53
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.61 E-value=1.1e-14 Score=139.79 Aligned_cols=112 Identities=19% Similarity=0.302 Sum_probs=101.9
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC-----CCHHHHHHHH
Q 023816 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-----MTGYELLKKI 106 (276)
Q Consensus 32 VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~-----~~G~ell~~I 106 (276)
||||||++..+..+...| .||++..+.++.+|++.+ ....||+||+|+.||+ ++|+++++++
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l-----------~~~~~dlvllD~~mp~~~~~~~~g~~~l~~i 67 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALV-----------RRHEPAVVTLDLGLPPDADGASEGLAALQQI 67 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHH-----------hhCCCCEEEEeCCCCCCcCCCCCHHHHHHHH
Confidence 689999999999999888 799999999999999999 5668999999999996 8999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
+...| .+|||++|+..+.+...++++.||+|||.|
T Consensus 68 ~~~~~---------------------------------------------~~piI~lt~~~~~~~~~~a~~~Ga~dyl~K 102 (445)
T TIGR02915 68 LAIAP---------------------------------------------DTKVIVITGNDDRENAVKAIGLGAYDFYQK 102 (445)
T ss_pred HhhCC---------------------------------------------CCCEEEEecCCCHHHHHHHHHCCccEEEeC
Confidence 98776 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 023816 187 PVKLSDVKRIKDYLT 201 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~ 201 (276)
|++.++|...+..+.
T Consensus 103 P~~~~~L~~~i~~~~ 117 (445)
T TIGR02915 103 PIDPDVLKLIVDRAF 117 (445)
T ss_pred CCCHHHHHHHHhhhh
Confidence 999999866665443
No 54
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.61 E-value=4.6e-14 Score=118.71 Aligned_cols=117 Identities=26% Similarity=0.410 Sum_probs=105.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
++||++||++..+..++..|...|+.+..+.++.++++.+ ....||+|++|+.+|+++|+++++.++..
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~d~vild~~~~~~~~~~~~~~i~~~ 69 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLL-----------QSEMYALAVLDINMPGMDGLEVLQRLRKR 69 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------hhCCCCEEEEeCCCCCCcHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999887 55679999999999999999999999976
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
.+ .+|+|++++........++++.|+++|+.||++
T Consensus 70 ~~---------------------------------------------~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~ 104 (221)
T PRK15479 70 GQ---------------------------------------------TLPVLLLTARSAVADRVKGLNVGADDYLPKPFE 104 (221)
T ss_pred CC---------------------------------------------CCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCC
Confidence 55 689999999999888899999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023816 190 LSDVKRIKDYLTR 202 (276)
Q Consensus 190 ~~~L~~~~~~l~~ 202 (276)
..++...+..+.+
T Consensus 105 ~~~l~~~i~~~~~ 117 (221)
T PRK15479 105 LEELDARLRALLR 117 (221)
T ss_pred HHHHHHHHHHHHh
Confidence 9998666655443
No 55
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.60 E-value=3.9e-14 Score=115.94 Aligned_cols=118 Identities=28% Similarity=0.410 Sum_probs=105.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
+..+||+|||++..+..+...|...|+.+..+.++.+++..+ ....||+||+|+.||+++|+++++.|+
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~d~ii~d~~~~~~~~~~~~~~l~ 70 (202)
T PRK09390 2 DKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDAL-----------PGLRFGCVVTDVRMPGIDGIELLRRLK 70 (202)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHh-----------ccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 457899999999999999999999999999999999999888 567799999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
...+ .+|+|++++.........+++.|+.+|+.||
T Consensus 71 ~~~~---------------------------------------------~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p 105 (202)
T PRK09390 71 ARGS---------------------------------------------PLPVIVMTGHGDVPLAVEAMKLGAVDFIEKP 105 (202)
T ss_pred hcCC---------------------------------------------CCCEEEEECCCCHHHHHHHHHcChHHHhhCC
Confidence 7555 7899999999998899999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 023816 188 VKLSDVKRIKDYLT 201 (276)
Q Consensus 188 v~~~~L~~~~~~l~ 201 (276)
+...++...+....
T Consensus 106 ~~~~~l~~~l~~~~ 119 (202)
T PRK09390 106 FEDERLIGAIERAL 119 (202)
T ss_pred CCHHHHHHHHHHHH
Confidence 99988865555433
No 56
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.60 E-value=3e-14 Score=123.77 Aligned_cols=115 Identities=23% Similarity=0.350 Sum_probs=96.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCC-CE-EEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISS-CK-VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g-~~-v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
+++||||||++..+..++..|+..| +. +..+.++.+++..+ ....||+|++|+.||+++|+++++.+
T Consensus 1 m~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~dlv~lDi~~~~~~G~~~~~~l 69 (238)
T PRK11697 1 MIKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAI-----------HRLKPDVVFLDIQMPRISGLELVGML 69 (238)
T ss_pred CcEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHh
Confidence 3799999999999999999999887 34 34689999999988 55679999999999999999999988
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
+.. + ..+||++|++. +...++++.|+.+||.|
T Consensus 70 ~~~-~---------------------------------------------~~~ii~vt~~~--~~~~~a~~~~~~~yl~K 101 (238)
T PRK11697 70 DPE-H---------------------------------------------MPYIVFVTAFD--EYAIKAFEEHAFDYLLK 101 (238)
T ss_pred ccc-C---------------------------------------------CCEEEEEeccH--HHHHHHHhcCCcEEEEC
Confidence 631 1 34688888765 46678999999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 023816 187 PVKLSDVKRIKDYLTR 202 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~~ 202 (276)
|++.+++...+..+.+
T Consensus 102 P~~~~~l~~~l~~~~~ 117 (238)
T PRK11697 102 PIDPARLAKTLARLRQ 117 (238)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999777776654
No 57
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.60 E-value=7.5e-14 Score=119.45 Aligned_cols=116 Identities=25% Similarity=0.362 Sum_probs=103.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
..+||+|||+...+..+...|...|+.+..+.++.+++..+ ....||+||+|+.||+++|+++++.|+.
T Consensus 10 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvl~d~~~~~~~g~~~~~~l~~ 78 (240)
T PRK10710 10 TPRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYV-----------RQTPPDLILLDLMLPGTDGLTLCREIRR 78 (240)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------hhCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 34899999999999999999999999999999999999988 5667999999999999999999999985
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
.+ .+|+|++++.........+++.|+++|+.||+
T Consensus 79 -~~---------------------------------------------~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~ 112 (240)
T PRK10710 79 -FS---------------------------------------------DIPIVMVTAKIEEIDRLLGLEIGADDYICKPY 112 (240)
T ss_pred -cC---------------------------------------------CCCEEEEEcCCCHHHHHHHHhcCCCeEEECCC
Confidence 22 58999999998888888999999999999999
Q ss_pred CHHHHHHHHHHHH
Q 023816 189 KLSDVKRIKDYLT 201 (276)
Q Consensus 189 ~~~~L~~~~~~l~ 201 (276)
+.++|...+..+.
T Consensus 113 ~~~~L~~~i~~~~ 125 (240)
T PRK10710 113 SPREVVARVKTIL 125 (240)
T ss_pred CHHHHHHHHHHHH
Confidence 9999866555443
No 58
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.60 E-value=1.5e-14 Score=125.34 Aligned_cols=111 Identities=17% Similarity=0.256 Sum_probs=105.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhC
Q 023816 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTT 110 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~ 110 (276)
+.|||||+..+.+.|.+.|++.||.|.++.+.+||+..+ +...|.-.++|+.|.+.+|+++++.|++..
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~a-----------rt~~PayAvvDlkL~~gsGL~~i~~lr~~~ 79 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAA-----------RTAPPAYAVVDLKLGDGSGLAVIEALRERR 79 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHH-----------hcCCCceEEEEeeecCCCchHHHHHHHhcC
Confidence 789999999999999999999999999999999999999 778899999999999999999999999988
Q ss_pred CCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCH
Q 023816 111 PFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL 190 (276)
Q Consensus 111 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~ 190 (276)
+ +..||++|++.+.....+|++.||.+||.||.+.
T Consensus 80 ~---------------------------------------------d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAda 114 (182)
T COG4567 80 A---------------------------------------------DMRIVVLTGYASIATAVEAVKLGACDYLAKPADA 114 (182)
T ss_pred C---------------------------------------------cceEEEEecchHHHHHHHHHHhhhhhhcCCCCCh
Confidence 7 8999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 023816 191 SDVKRIK 197 (276)
Q Consensus 191 ~~L~~~~ 197 (276)
+++.+.+
T Consensus 115 Ddi~aAl 121 (182)
T COG4567 115 DDILAAL 121 (182)
T ss_pred HHHHHHH
Confidence 9985543
No 59
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.59 E-value=2.8e-14 Score=137.33 Aligned_cols=113 Identities=30% Similarity=0.465 Sum_probs=104.1
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCC
Q 023816 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTP 111 (276)
Q Consensus 32 VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p 111 (276)
||||||++..+..+...|+..|+.+..+.++.+|+..+ ....||+||+|+.||+++|+++++.|++..+
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~DlVllD~~~p~~~g~~ll~~l~~~~~ 69 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRAL-----------ARGQPDLLITDVRMPGEDGLDLLPQIKKRHP 69 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------hcCCCCEEEEcCCCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999999999999999999999988 5667999999999999999999999998666
Q ss_pred CCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHH
Q 023816 112 FNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLS 191 (276)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~ 191 (276)
.+|||++|++.......++++.|+.||+.||++.+
T Consensus 70 ---------------------------------------------~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~ 104 (463)
T TIGR01818 70 ---------------------------------------------QLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLD 104 (463)
T ss_pred ---------------------------------------------CCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHH
Confidence 78999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 023816 192 DVKRIKDYL 200 (276)
Q Consensus 192 ~L~~~~~~l 200 (276)
+|...+..+
T Consensus 105 ~L~~~i~~~ 113 (463)
T TIGR01818 105 EAVTLVERA 113 (463)
T ss_pred HHHHHHHHH
Confidence 987666554
No 60
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.59 E-value=3e-14 Score=133.06 Aligned_cols=102 Identities=25% Similarity=0.353 Sum_probs=90.3
Q ss_pred cEEEEEeCCHHHHHHHHHHH-hhCCCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 30 VHVLAVDDSFVDRKVIERLL-TISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L-~~~g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
++||+|||++..++.++++| +..++++. .+.++++|++.+ .+..||+|++|+.||+|+|++++++|+
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l-----------~~~~pDlVllD~~mp~~~G~e~l~~l~ 69 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERC-----------AAQPPDVILMDLEMPRMDGVEATRRIM 69 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHH-----------hccCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 48999999999999999999 56788887 689999999998 667899999999999999999999998
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCC--HHHHHHHHhcCCCeEEe
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENI--LARIDRCLEDGAEDFIV 185 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~--~~~~~~al~~Ga~d~l~ 185 (276)
+.. ++|+|++++... .....++++.|+.+|+.
T Consensus 70 ~~~----------------------------------------------~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~ 103 (337)
T PRK12555 70 AER----------------------------------------------PCPILIVTSLTERNASRVFEAMGAGALDAVD 103 (337)
T ss_pred HHC----------------------------------------------CCcEEEEeCCCCcCHHHHHHHHhcCceEEEE
Confidence 643 479999998754 45677899999999999
Q ss_pred CCC
Q 023816 186 KPV 188 (276)
Q Consensus 186 KPv 188 (276)
||+
T Consensus 104 KP~ 106 (337)
T PRK12555 104 TPT 106 (337)
T ss_pred CCC
Confidence 999
No 61
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.55 E-value=2.9e-13 Score=111.19 Aligned_cols=118 Identities=20% Similarity=0.340 Sum_probs=103.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTIS-SCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~-g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
..++||+|||++..+..+...|... ++.+. .+.++.++++.+ ....||+|++|+.|++++|+++++.
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~dlvl~d~~~~~~~~~~~~~~ 70 (211)
T PRK15369 2 KNYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNAC-----------RQLEPDIVILDLGLPGMNGLDVIPQ 70 (211)
T ss_pred CccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHH
Confidence 4689999999999999999999865 46654 689999999887 5678999999999999999999999
Q ss_pred HHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 106 IKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 106 Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
+++..+ .+|+|++++.........+++.|+.+|+.
T Consensus 71 l~~~~~---------------------------------------------~~~ii~ls~~~~~~~~~~~~~~g~~~~l~ 105 (211)
T PRK15369 71 LHQRWP---------------------------------------------AMNILVLTARQEEHMASRTLAAGALGYVL 105 (211)
T ss_pred HHHHCC---------------------------------------------CCcEEEEeCCCCHHHHHHHHHhCCCEEEe
Confidence 997655 68999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 023816 186 KPVKLSDVKRIKDYLT 201 (276)
Q Consensus 186 KPv~~~~L~~~~~~l~ 201 (276)
||++..+|...+....
T Consensus 106 kp~~~~~l~~~i~~~~ 121 (211)
T PRK15369 106 KKSPQQILLAAIQTVA 121 (211)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999866665544
No 62
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.54 E-value=3.5e-13 Score=112.02 Aligned_cols=118 Identities=20% Similarity=0.353 Sum_probs=103.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTI-SSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~-~g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
.+++||+|||++..+..+...|+. .++.+. .+.++.++++.+ ....||+||+|+.||+++|+++++.
T Consensus 5 ~~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~dlvi~d~~~~~~~~~~~~~~ 73 (215)
T PRK10403 5 TPFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLA-----------NRLDPDVILLDLNMKGMSGLDTLNA 73 (215)
T ss_pred eeEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH-----------HhcCCCEEEEecCCCCCcHHHHHHH
Confidence 458999999999999999999975 577775 589999999987 5667999999999999999999999
Q ss_pred HHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 106 IKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 106 Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++...+ ..|+++++..........+++.|+++|+.
T Consensus 74 l~~~~~---------------------------------------------~~~ii~l~~~~~~~~~~~~~~~g~~~~i~ 108 (215)
T PRK10403 74 LRRDGV---------------------------------------------TAQIIILTVSDASSDVFALIDAGADGYLL 108 (215)
T ss_pred HHHhCC---------------------------------------------CCeEEEEeCCCChHHHHHHHHcCCCeEEe
Confidence 998665 67899999988888888999999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 023816 186 KPVKLSDVKRIKDYLT 201 (276)
Q Consensus 186 KPv~~~~L~~~~~~l~ 201 (276)
||++..++...++.+.
T Consensus 109 kp~~~~~l~~~i~~~~ 124 (215)
T PRK10403 109 KDSDPEVLLEAIRAGA 124 (215)
T ss_pred cCCCHHHHHHHHHHHh
Confidence 9999999876666543
No 63
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.54 E-value=3.7e-13 Score=112.25 Aligned_cols=120 Identities=24% Similarity=0.436 Sum_probs=104.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTIS-SCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~-g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~ 104 (276)
....+||+|||++..+..++.+|... ++.+. .+.++++++..+ ....||+||+|+.+|+++|+++++
T Consensus 4 ~~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~dlvl~d~~l~~~~~~~~~~ 72 (216)
T PRK10651 4 QEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELA-----------ESLDPDLILLDLNMPGMNGLETLD 72 (216)
T ss_pred CcceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHH-----------HhCCCCEEEEeCCCCCCcHHHHHH
Confidence 45689999999999999999999764 56654 589999999988 566799999999999999999999
Q ss_pred HHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 105 KIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 105 ~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
.++...+ ..|+++++..........+++.|+++|+
T Consensus 73 ~l~~~~~---------------------------------------------~~~vi~l~~~~~~~~~~~~~~~g~~~~i 107 (216)
T PRK10651 73 KLREKSL---------------------------------------------SGRIVVFSVSNHEEDVVTALKRGADGYL 107 (216)
T ss_pred HHHHhCC---------------------------------------------CCcEEEEeCCCCHHHHHHHHHcCCCEEE
Confidence 9998666 6799999999998999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHH
Q 023816 185 VKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 185 ~KPv~~~~L~~~~~~l~~ 202 (276)
.||++..+|...+..+.+
T Consensus 108 ~k~~~~~~l~~~i~~~~~ 125 (216)
T PRK10651 108 LKDMEPEDLLKALQQAAA 125 (216)
T ss_pred eCCCCHHHHHHHHHHHHC
Confidence 999999998766665543
No 64
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.54 E-value=2.8e-13 Score=126.42 Aligned_cols=120 Identities=31% Similarity=0.447 Sum_probs=106.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
.+||+|||++..+..+.+.|...|+++..+.++.++++.+ .+..||+|++|+.||+.+|+++++.|+..
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvi~d~~~~~~~g~~l~~~i~~~ 71 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAIC-----------EREQPDIILLDVMMPGMDGFEVCRRLKSD 71 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHH-----------hhcCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 4899999999999999999998999999999999999998 66789999999999999999999999863
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
.+ ...+|||++++........++++.|+++|+.||++
T Consensus 72 ~~-------------------------------------------~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~ 108 (457)
T PRK09581 72 PA-------------------------------------------TTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPIN 108 (457)
T ss_pred cc-------------------------------------------cCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCC
Confidence 21 12689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 023816 190 LSDVKRIKDYLTRD 203 (276)
Q Consensus 190 ~~~L~~~~~~l~~~ 203 (276)
.++|...+..+.+.
T Consensus 109 ~~~l~~~i~~~~~~ 122 (457)
T PRK09581 109 DVALFARVKSLTRL 122 (457)
T ss_pred HHHHHHHHHHHHHH
Confidence 99997666665543
No 65
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.54 E-value=9.2e-14 Score=139.23 Aligned_cols=107 Identities=21% Similarity=0.184 Sum_probs=99.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
+.++||||||++.++..+.++|...||.+..+.++.+++..+ ....||+||+|+.||+++|++++++|+
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~-----------~~~~~Dlvl~d~~lp~~~g~~~l~~l~ 74 (665)
T PRK13558 6 PTRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRV-----------EAGEIDCVVADHEPDGFDGLALLEAVR 74 (665)
T ss_pred cceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHh-----------hccCCCEEEEeccCCCCcHHHHHHHHH
Confidence 468999999999999999999999999999999999999988 566799999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
...+ .+|||++|+..+.....++++.|+.||+.||
T Consensus 75 ~~~~---------------------------------------------~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~ 109 (665)
T PRK13558 75 QTTA---------------------------------------------VPPVVVVPTAGDEAVARRAVDADAAAYVPAV 109 (665)
T ss_pred hcCC---------------------------------------------CCCEEEEECCCCHHHHHHHHhcCcceEEecc
Confidence 7666 7899999999999999999999999999999
Q ss_pred CCH
Q 023816 188 VKL 190 (276)
Q Consensus 188 v~~ 190 (276)
...
T Consensus 110 ~~~ 112 (665)
T PRK13558 110 SDD 112 (665)
T ss_pred chh
Confidence 753
No 66
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.54 E-value=2e-13 Score=128.17 Aligned_cols=106 Identities=35% Similarity=0.430 Sum_probs=92.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTIS-SCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~-g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~ 104 (276)
|.+++||||||+...+..+++.|+.. ++.+. .+.+++++++.+ ....||+|++|+.||+++|+++++
T Consensus 1 m~~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~-----------~~~~~DlVllD~~mp~~dgle~l~ 69 (354)
T PRK00742 1 MMKIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKI-----------KKLNPDVITLDVEMPVMDGLDALE 69 (354)
T ss_pred CCccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHH-----------hhhCCCEEEEeCCCCCCChHHHHH
Confidence 35689999999999999999999876 88887 799999999988 667899999999999999999999
Q ss_pred HHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCC--CHHHHHHHHhcCCCe
Q 023816 105 KIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSEN--ILARIDRCLEDGAED 182 (276)
Q Consensus 105 ~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~--~~~~~~~al~~Ga~d 182 (276)
+|++.. ++|+|++|+.. ......++++.|++|
T Consensus 70 ~i~~~~----------------------------------------------~~piIvls~~~~~~~~~~~~al~~Ga~d 103 (354)
T PRK00742 70 KIMRLR----------------------------------------------PTPVVMVSSLTERGAEITLRALELGAVD 103 (354)
T ss_pred HHHHhC----------------------------------------------CCCEEEEecCCCCCHHHHHHHHhCCCcE
Confidence 999633 27999999753 345677899999999
Q ss_pred EEeCCCC
Q 023816 183 FIVKPVK 189 (276)
Q Consensus 183 ~l~KPv~ 189 (276)
|+.||+.
T Consensus 104 ~l~kP~~ 110 (354)
T PRK00742 104 FVTKPFL 110 (354)
T ss_pred EEeCCcc
Confidence 9999994
No 67
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.52 E-value=1.7e-12 Score=96.90 Aligned_cols=120 Identities=28% Similarity=0.463 Sum_probs=102.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCE-EEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCK-VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~-v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
+.++|+++|++......+...|...|+. +..+.++.+++..+ ....+|++++|..+++++|+++++.+
T Consensus 4 ~~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~~~di~l~d~~~~~~~~~~~~~~l 72 (129)
T PRK10610 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGGFGFVISDWNMPNMDGLELLKTI 72 (129)
T ss_pred ccceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHh-----------hccCCCEEEEcCCCCCCCHHHHHHHH
Confidence 4579999999999999999999988984 77789999999887 55679999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
++... ...+|+++++..........+++.|+.+|+.|
T Consensus 73 ~~~~~-------------------------------------------~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~ 109 (129)
T PRK10610 73 RADGA-------------------------------------------MSALPVLMVTAEAKKENIIAAAQAGASGYVVK 109 (129)
T ss_pred HhCCC-------------------------------------------cCCCcEEEEECCCCHHHHHHHHHhCCCeEEEC
Confidence 96432 12578999998888888889999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 023816 187 PVKLSDVKRIKDYLT 201 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~ 201 (276)
|++..++...+..+.
T Consensus 110 p~~~~~l~~~l~~~~ 124 (129)
T PRK10610 110 PFTAATLEEKLNKIF 124 (129)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999866655543
No 68
>PRK13435 response regulator; Provisional
Probab=99.50 E-value=1.1e-12 Score=106.09 Aligned_cols=115 Identities=23% Similarity=0.290 Sum_probs=97.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCC-CCCHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-GMTGYELLK 104 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp-~~~G~ell~ 104 (276)
+.+++||++||+...+..+...|+..|+++. .+.+++++++.+ ....||+|++|+.++ +.+|+++++
T Consensus 3 ~~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~~~dliivd~~~~~~~~~~~~~~ 71 (145)
T PRK13435 3 LRQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALG-----------RRRQPDVALVDVHLADGPTGVEVAR 71 (145)
T ss_pred cccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHh-----------hhcCCCEEEEeeecCCCCcHHHHHH
Confidence 4578999999999999999999999999987 689999999987 456799999999998 589999999
Q ss_pred HHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 105 KIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 105 ~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
.+++. + .+|+|++++... ...++..|+++|+
T Consensus 72 ~l~~~-~---------------------------------------------~~pii~ls~~~~---~~~~~~~ga~~~l 102 (145)
T PRK13435 72 RLSAD-G---------------------------------------------GVEVVFMTGNPE---RVPHDFAGALGVI 102 (145)
T ss_pred HHHhC-C---------------------------------------------CCCEEEEeCCHH---HHHHHhcCcceeE
Confidence 99752 2 589999987643 3467889999999
Q ss_pred eCCCCHHHHHHHHHHHH
Q 023816 185 VKPVKLSDVKRIKDYLT 201 (276)
Q Consensus 185 ~KPv~~~~L~~~~~~l~ 201 (276)
.||++.+++.+.+..+.
T Consensus 103 ~kp~~~~~l~~~i~~~~ 119 (145)
T PRK13435 103 AKPYSPRGVARALSYLS 119 (145)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 99999999977665553
No 69
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.50 E-value=1.5e-13 Score=131.74 Aligned_cols=104 Identities=39% Similarity=0.512 Sum_probs=92.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCC-CEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISS-CKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g-~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
.++||+|||+...|+.|.++|...+ ++++ .+.||.+|++++ .+..||+|.+|+.||.|||++++++|
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~-----------~~~~PDVi~ld~emp~mdgl~~l~~i 69 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKV-----------KKLKPDVITLDVEMPVMDGLEALRKI 69 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHH-----------HhcCCCEEEEecccccccHHHHHHHH
Confidence 4799999999999999999999888 5554 699999999999 78899999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCH--HHHHHHHhcCCCeEE
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENIL--ARIDRCLEDGAEDFI 184 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~--~~~~~al~~Ga~d~l 184 (276)
.+.. ++|||++++-... +...+|++.||.||+
T Consensus 70 m~~~----------------------------------------------p~pVimvsslt~~g~~~t~~al~~gAvD~i 103 (350)
T COG2201 70 MRLR----------------------------------------------PLPVIMVSSLTEEGAEATLEALELGAVDFI 103 (350)
T ss_pred hcCC----------------------------------------------CCcEEEEeccccccHHHHHHHHhcCcceee
Confidence 9753 6999999886554 456689999999999
Q ss_pred eCCCC
Q 023816 185 VKPVK 189 (276)
Q Consensus 185 ~KPv~ 189 (276)
.||..
T Consensus 104 ~kp~~ 108 (350)
T COG2201 104 AKPSG 108 (350)
T ss_pred cCCCc
Confidence 99974
No 70
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.47 E-value=1.3e-12 Score=116.95 Aligned_cols=117 Identities=10% Similarity=0.086 Sum_probs=96.7
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHhhCCCEE-EEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHH-
Q 023816 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELL- 103 (276)
Q Consensus 26 ~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v-~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell- 103 (276)
.+...+|++|||++..+..|..+|. .++.+ ..+.++.++++.+ . .|||||+|+.||+++|++++
T Consensus 7 ~~~~~~~~~v~~~~l~~~~l~~~L~-~~~~v~~~~~~~~~~~~~~-----------~--~~DvvllDi~~p~~~G~~~~~ 72 (216)
T PRK10100 7 SSHGHTLLLITKPSLQATALLQHLK-QSLAITGKLHNIQRSLDDI-----------S--SGSIILLDMMEADKKLIHYWQ 72 (216)
T ss_pred cccCceEEEEeChHhhhHHHHHHHH-HhCCCeEEEcCHHHhhccC-----------C--CCCEEEEECCCCCccHHHHHH
Confidence 4557789999999999999999998 55554 4578999998865 3 39999999999999999997
Q ss_pred HHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHh--cCCC
Q 023816 104 KKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLE--DGAE 181 (276)
Q Consensus 104 ~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~--~Ga~ 181 (276)
+.|++..| .++||++|+..+ ....++. .||.
T Consensus 73 ~~i~~~~p---------------------------------------------~~~vvvlt~~~~--~~~~~~~~~~Ga~ 105 (216)
T PRK10100 73 DTLSRKNN---------------------------------------------NIKILLLNTPED--YPYREIENWPHIN 105 (216)
T ss_pred HHHHHhCC---------------------------------------------CCcEEEEECCch--hHHHHHHHhcCCe
Confidence 56888777 799999999876 3445555 5999
Q ss_pred eEEeCCCCHHHHHHHHHHHHHh
Q 023816 182 DFIVKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 182 d~l~KPv~~~~L~~~~~~l~~~ 203 (276)
+|+.|+.+.++|.+.++.+...
T Consensus 106 G~l~K~~~~~~L~~aI~~v~~G 127 (216)
T PRK10100 106 GVFYAMEDQERVVNGLQGVLRG 127 (216)
T ss_pred EEEECCCCHHHHHHHHHHHHcC
Confidence 9999999999998777766543
No 71
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.43 E-value=2.6e-12 Score=114.35 Aligned_cols=105 Identities=14% Similarity=0.182 Sum_probs=88.4
Q ss_pred HHHHHHHHhh---CCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEE---EecCCCCCCHHHHHHHHHhhCCCCcc
Q 023816 42 RKVIERLLTI---SSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII---TDYCMPGMTGYELLKKIKVTTPFNFL 115 (276)
Q Consensus 42 ~~~L~~~L~~---~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL---~D~~mp~~~G~ell~~Ir~~~p~~~~ 115 (276)
|..+..+|+. .|+.+..+.+++++++.+ ....||++| +|+.||+++|++++++|++..|
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~-----------~~~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p---- 67 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAM-----------SRISFSAVIFSLSAMRSERREGLSCLTELAIKFP---- 67 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHh-----------ccCCCCEEEeeccccCCCCCCHHHHHHHHHHHCC----
Confidence 6778888864 356667899999999988 666799998 6888999999999999999888
Q ss_pred cchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHH-hcCCCeEEeCCCCHHHHH
Q 023816 116 YSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCL-EDGAEDFIVKPVKLSDVK 194 (276)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al-~~Ga~d~l~KPv~~~~L~ 194 (276)
+++||++|+..+.....+++ ++||.+|+.||.+.++|.
T Consensus 68 -----------------------------------------~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~ 106 (207)
T PRK11475 68 -----------------------------------------RMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQ 106 (207)
T ss_pred -----------------------------------------CCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHH
Confidence 89999999988776666655 799999999999999997
Q ss_pred HHHHHHHH
Q 023816 195 RIKDYLTR 202 (276)
Q Consensus 195 ~~~~~l~~ 202 (276)
+.++.+.+
T Consensus 107 ~aI~~v~~ 114 (207)
T PRK11475 107 QELFLSLN 114 (207)
T ss_pred HHHHHHHC
Confidence 77766554
No 72
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.41 E-value=8.7e-12 Score=88.14 Aligned_cols=110 Identities=33% Similarity=0.559 Sum_probs=97.3
Q ss_pred EEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCCC
Q 023816 33 LAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPF 112 (276)
Q Consensus 33 LIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~ 112 (276)
|++|+++..+..+...++..|+.+..+.+..+++..+ ....+|++++|..+++.+|+++++.++...+
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ii~~~~~~~~~~~~~~~~l~~~~~- 68 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALL-----------AEEKPDLILLDIMMPGMDGLELLRRIRKRGP- 68 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHH-----------HhCCCCEEEEecCCCCCchHHHHHHHHHhCC-
Confidence 4789999999999999998899999999999999888 5567999999999999999999999997544
Q ss_pred CcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHH
Q 023816 113 NFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD 192 (276)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~ 192 (276)
.+|+++++..........+++.|+.+|+.||++..+
T Consensus 69 --------------------------------------------~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~ 104 (113)
T cd00156 69 --------------------------------------------DIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEE 104 (113)
T ss_pred --------------------------------------------CCCEEEEEecccHHHHHHHHHcChhhHccCCCCHHH
Confidence 689999988877778888999999999999999988
Q ss_pred HHHHHH
Q 023816 193 VKRIKD 198 (276)
Q Consensus 193 L~~~~~ 198 (276)
+.+.+.
T Consensus 105 l~~~l~ 110 (113)
T cd00156 105 LLARIR 110 (113)
T ss_pred HHHHHH
Confidence 866554
No 73
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.39 E-value=8.7e-12 Score=129.38 Aligned_cols=117 Identities=12% Similarity=0.143 Sum_probs=103.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
+.+||||||++..+..+++.|+..||++..+.+++++++.+.. ....||+||+ .||+++|.++++.|+.
T Consensus 697 ~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~---------~~~~~DlVll--~~~~~~g~~l~~~l~~ 765 (828)
T PRK13837 697 GETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISK---------GPERFDLVLV--DDRLLDEEQAAAALHA 765 (828)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh---------CCCCceEEEE--CCCCCCHHHHHHHHHh
Confidence 4589999999999999999999999999999999999998821 1234899999 7999999999999998
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
..+ .+|||++++........++++.| +|||.||+
T Consensus 766 ~~~---------------------------------------------~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~ 799 (828)
T PRK13837 766 AAP---------------------------------------------TLPIILGGNSKTMALSPDLLASV-AEILAKPI 799 (828)
T ss_pred hCC---------------------------------------------CCCEEEEeCCCchhhhhhHhhcc-CcEEeCCC
Confidence 666 79999999999988999999999 99999999
Q ss_pred CHHHHHHHHHHHHH
Q 023816 189 KLSDVKRIKDYLTR 202 (276)
Q Consensus 189 ~~~~L~~~~~~l~~ 202 (276)
+..+|...+..+.+
T Consensus 800 ~~~~L~~~l~~~l~ 813 (828)
T PRK13837 800 SSRTLAYALRTALA 813 (828)
T ss_pred CHHHHHHHHHHHHc
Confidence 99999777766553
No 74
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.38 E-value=9.3e-12 Score=110.04 Aligned_cols=115 Identities=10% Similarity=0.073 Sum_probs=95.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCC--CEE-EEECCHHHHHHHhcccccccccCCCCCceeEEEEecC--CCCCCHHHHHHH
Q 023816 31 HVLAVDDSFVDRKVIERLLTISS--CKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC--MPGMTGYELLKK 105 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g--~~v-~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~--mp~~~G~ell~~ 105 (276)
.||||||++..+..++.+|...+ +++ ..+.++.++++.+ +..+|||||+|+. |++.+|.+++++
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~-----------~~~~pDlvLlDl~~~l~~~~g~~~i~~ 70 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIAC-----------DSLRPSVVFINEDCFIHDASNSQRIKQ 70 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHH-----------hccCCCEEEEeCcccCCCCChHHHHHH
Confidence 58999999999999999998655 344 4689999999988 5668999999976 888899999999
Q ss_pred HHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCe-EE
Q 023816 106 IKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAED-FI 184 (276)
Q Consensus 106 Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d-~l 184 (276)
|++..| .++||++|+..+..... ++..|+.. |+
T Consensus 71 i~~~~p---------------------------------------------~~~iivlt~~~~~~~~~-~~~~~~~~~~~ 104 (207)
T PRK15411 71 IINQHP---------------------------------------------NTLFIVFMAIANIHFDE-YLLVRKNLLIS 104 (207)
T ss_pred HHHHCC---------------------------------------------CCeEEEEECCCchhHHH-HHHHHhhceee
Confidence 999888 79999999987766543 55555544 88
Q ss_pred eCCCCHHHHHHHHHHHHH
Q 023816 185 VKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 185 ~KPv~~~~L~~~~~~l~~ 202 (276)
.|+.+.++|.+.++.+..
T Consensus 105 ~K~~~~~~L~~aI~~v~~ 122 (207)
T PRK15411 105 SKSIKPESLDDLLGDILK 122 (207)
T ss_pred eccCCHHHHHHHHHHHHc
Confidence 999999999777766543
No 75
>PRK09191 two-component response regulator; Provisional
Probab=99.35 E-value=3.3e-11 Score=106.14 Aligned_cols=114 Identities=18% Similarity=0.221 Sum_probs=96.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC-CCHHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-MTGYELLKKI 106 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~-~~G~ell~~I 106 (276)
..+|||+||++..+..++..|+..|+.+. .+.++.+++..+ .+..||+||+|+.||+ ++|+++++.+
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l-----------~~~~~dlvi~d~~~~~~~~g~e~l~~l 205 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALA-----------KKTRPGLILADIQLADGSSGIDAVNDI 205 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHH-----------hccCCCEEEEecCCCCCCCHHHHHHHH
Confidence 46899999999999999999999999988 689999999988 5668999999999995 8999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
+... .+|+|++|+...... .+...|+.+|+.|
T Consensus 206 ~~~~----------------------------------------------~~pii~ls~~~~~~~--~~~~~~~~~~l~k 237 (261)
T PRK09191 206 LKTF----------------------------------------------DVPVIFITAFPERLL--TGERPEPAFLITK 237 (261)
T ss_pred HHhC----------------------------------------------CCCEEEEeCCCcHHH--HHHhcccCceEEC
Confidence 8521 489999998766443 3445678899999
Q ss_pred CCCHHHHHHHHHHHH
Q 023816 187 PVKLSDVKRIKDYLT 201 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~ 201 (276)
|++.+++...+..+.
T Consensus 238 P~~~~~l~~~i~~~~ 252 (261)
T PRK09191 238 PFQPDTVKAAISQAL 252 (261)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999977666544
No 76
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.35 E-value=6.8e-12 Score=111.73 Aligned_cols=114 Identities=26% Similarity=0.309 Sum_probs=95.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
..+||++||++..+..+...|...||.++. +.++-++.... ..+.||+||+|+.||..|-.+.+-...
T Consensus 5 ~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~-----------~~~~pDvVildie~p~rd~~e~~~~~~ 73 (194)
T COG3707 5 LLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVC-----------ERLQPDVVILDIEMPRRDIIEALLLAS 73 (194)
T ss_pred ccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHH-----------HhcCCCEEEEecCCCCccHHHHHHHhh
Confidence 578999999999999999999999997665 77777777776 678999999999999999444333333
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
.++ .-|||++|++++++.+..++++|+..||+||
T Consensus 74 -~~~---------------------------------------------~~piv~lt~~s~p~~i~~a~~~Gv~ayivkp 107 (194)
T COG3707 74 -ENV---------------------------------------------ARPIVALTAYSDPALIEAAIEAGVMAYIVKP 107 (194)
T ss_pred -cCC---------------------------------------------CCCEEEEEccCChHHHHHHHHcCCeEEEecC
Confidence 223 6799999999999999999999999999999
Q ss_pred CCHHHHHHHHHH
Q 023816 188 VKLSDVKRIKDY 199 (276)
Q Consensus 188 v~~~~L~~~~~~ 199 (276)
++...|.-+++-
T Consensus 108 i~~~rl~p~L~v 119 (194)
T COG3707 108 LDESRLLPILDV 119 (194)
T ss_pred cchhhhhHHHHH
Confidence 999888665543
No 77
>PRK13557 histidine kinase; Provisional
Probab=99.34 E-value=3.2e-11 Score=115.02 Aligned_cols=118 Identities=24% Similarity=0.318 Sum_probs=104.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC-CCHHHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-MTGYELLKKIK 107 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~-~~G~ell~~Ir 107 (276)
..+||+|||+...+..+.+.|+..|+++..+.++.++++.+. ....||+|++|..||+ ++|+++++.|+
T Consensus 415 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~----------~~~~~d~vi~d~~~~~~~~~~~~~~~l~ 484 (540)
T PRK13557 415 TETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILD----------SHPEVDLLFTDLIMPGGMNGVMLAREAR 484 (540)
T ss_pred CceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHh----------cCCCceEEEEeccCCCCCCHHHHHHHHH
Confidence 458999999999999999999999999999999999999882 2336999999999997 99999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
...+ .+|+|++++.........++..|+.+|+.||
T Consensus 485 ~~~~---------------------------------------------~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp 519 (540)
T PRK13557 485 RRQP---------------------------------------------KIKVLLTTGYAEASIERTDAGGSEFDILNKP 519 (540)
T ss_pred HhCC---------------------------------------------CCcEEEEcCCCchhhhhhhccccCCceeeCC
Confidence 8666 6899999999888888889999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 023816 188 VKLSDVKRIKDYLT 201 (276)
Q Consensus 188 v~~~~L~~~~~~l~ 201 (276)
++.++|...+..+.
T Consensus 520 ~~~~~l~~~l~~~~ 533 (540)
T PRK13557 520 YRRAELARRVRMVL 533 (540)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999866665543
No 78
>PRK10693 response regulator of RpoS; Provisional
Probab=99.28 E-value=3.8e-11 Score=111.48 Aligned_cols=87 Identities=31% Similarity=0.560 Sum_probs=76.1
Q ss_pred EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccc
Q 023816 58 AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICF 137 (276)
Q Consensus 58 ~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (276)
.+.++++|++.+ +...||+||+|+.||+++|++++++|++..+
T Consensus 2 ~a~~g~~al~~l-----------~~~~pDlVL~D~~mp~~~Gle~~~~ir~~~~-------------------------- 44 (303)
T PRK10693 2 LAANGVDALELL-----------GGFTPDLIICDLAMPRMNGIEFVEHLRNRGD-------------------------- 44 (303)
T ss_pred EeCCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--------------------------
Confidence 467899999988 5678999999999999999999999997555
Q ss_pred cCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC-CHHHHHHHHHHH
Q 023816 138 CFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV-KLSDVKRIKDYL 200 (276)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv-~~~~L~~~~~~l 200 (276)
.+|||++|+....+...++++.|++||+.||+ +.+++.+.+...
T Consensus 45 -------------------~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~~~~~L~~~i~~~ 89 (303)
T PRK10693 45 -------------------QTPVLVISATENMADIAKALRLGVQDVLLKPVKDLNRLREMVFAC 89 (303)
T ss_pred -------------------CCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCcHHHHHHHHHHH
Confidence 68999999999999999999999999999999 478886555443
No 79
>PRK15029 arginine decarboxylase; Provisional
Probab=99.15 E-value=3.4e-10 Score=118.03 Aligned_cols=107 Identities=19% Similarity=0.250 Sum_probs=88.8
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCC-CceeEEEEecCCCCCCHH
Q 023816 30 VHVLAVDDSFV--------DRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDG-LKVDLIITDYCMPGMTGY 100 (276)
Q Consensus 30 ~~VLIVdD~~~--------~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~-~~~DlIL~D~~mp~~~G~ 100 (276)
++||||||+.. .++.|+..|+..||+|..+.++++|++.+ +. ..||+||+|+.||+++|+
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l-----------~~~~~~DlVLLD~~LPd~dG~ 69 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAIL-----------SSNEAIDCLMFSYQMEHPDEH 69 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------HhcCCCcEEEEECCCCCCccc
Confidence 37999999995 69999999999999999999999999998 44 589999999999999997
Q ss_pred ----HHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCC--HHHHHH
Q 023816 101 ----ELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENI--LARIDR 174 (276)
Q Consensus 101 ----ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~--~~~~~~ 174 (276)
+++++||+..+ .+|||++|+... ......
T Consensus 70 ~~~~ell~~IR~~~~---------------------------------------------~iPIIlLTar~~~~~~~~~~ 104 (755)
T PRK15029 70 QNVRQLIGKLHERQQ---------------------------------------------NVPVFLLGDREKALAAMDRD 104 (755)
T ss_pred hhHHHHHHHHHhhCC---------------------------------------------CCCEEEEEcCCcccccCCHH
Confidence 89999997555 799999999886 333334
Q ss_pred HHhcCCCeEEeCCCCHHHH
Q 023816 175 CLEDGAEDFIVKPVKLSDV 193 (276)
Q Consensus 175 al~~Ga~d~l~KPv~~~~L 193 (276)
.++ -++.|+-+-....+.
T Consensus 105 ~~~-~~~~~~~~~~~~~~~ 122 (755)
T PRK15029 105 LLE-LVDEFAWILEDTADF 122 (755)
T ss_pred HHH-hhheEEEecCCCHHH
Confidence 333 377888886655553
No 80
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.14 E-value=2.3e-10 Score=104.28 Aligned_cols=117 Identities=28% Similarity=0.488 Sum_probs=98.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTIS-SCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~-g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
+++|+++||++..++.+..++... .+++. .+.++.++++.+ +...+|++++|+.||+++|+++.+.|
T Consensus 1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~fldI~~~~~~G~ela~~i 69 (244)
T COG3279 1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLL-----------QGLRPDLVFLDIAMPDINGIELAARI 69 (244)
T ss_pred CCcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHH-----------hccCCCeEEEeeccCccchHHHHHHh
Confidence 368999999999999999999832 23333 588999999998 66699999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
+...+ ..+||++|++.. ....+.+..|.|||.|
T Consensus 70 ~~~~~---------------------------------------------~~~Ivfvt~~~~--~a~~afev~a~d~i~k 102 (244)
T COG3279 70 RKGDP---------------------------------------------RPAIVFVTAHDE--YAVAAFEVEALDYLLK 102 (244)
T ss_pred cccCC---------------------------------------------CCeEEEEEehHH--HHHHHHhHHHHhhhcC
Confidence 97655 789999998865 5556778899999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 023816 187 PVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~~~ 203 (276)
|+..+++...+.++.+.
T Consensus 103 p~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 103 PISEERLAKTLERLRRY 119 (244)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 99999998887765554
No 81
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.52 E-value=2e-06 Score=88.67 Aligned_cols=115 Identities=11% Similarity=0.061 Sum_probs=93.1
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 26 ~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
...+.+|+++||++..++.+.++|...|+.+..+.++.+ + ....||++++|+.||+.++.+.+..
T Consensus 533 ~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l-----------~~~~~d~il~~~~~~~~~~~~~~~~ 597 (919)
T PRK11107 533 CLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----L-----------PEAHYDILLLGLPVTFREPLTMLHE 597 (919)
T ss_pred ccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----h-----------ccCCCCEEEecccCCCCCCHHHHHH
Confidence 345679999999999999999999999999999999877 3 3457999999999999887765555
Q ss_pred HHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 106 IKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 106 Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.....+ ....++++++..........+.+.|+++|+.
T Consensus 598 ~~~~~~-------------------------------------------~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~ 634 (919)
T PRK11107 598 RLAKAK-------------------------------------------SMTDFLILALPCHEQVLAEQLKQDGADACLS 634 (919)
T ss_pred HHHhhh-------------------------------------------hcCCcEEEEeCCcchhhHHHHhhCCCceEEC
Confidence 543221 1134677788888888889999999999999
Q ss_pred CCCCHHHHHHHHH
Q 023816 186 KPVKLSDVKRIKD 198 (276)
Q Consensus 186 KPv~~~~L~~~~~ 198 (276)
||+...++...+.
T Consensus 635 kp~~~~~l~~~l~ 647 (919)
T PRK11107 635 KPLSHTRLLPALL 647 (919)
T ss_pred CCCCHHHHHHHHH
Confidence 9999998855554
No 82
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.06 E-value=3.7e-06 Score=83.33 Aligned_cols=91 Identities=34% Similarity=0.450 Sum_probs=77.0
Q ss_pred CEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhh
Q 023816 54 CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFIL 133 (276)
Q Consensus 54 ~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~ 133 (276)
++|..+..|.+|+..+ ..+++|.+|+|+.||+++|+++++.++...
T Consensus 13 ~~v~~a~~g~~~l~~~-----------~~~~~~~~lld~~m~~~~~~~~~~~lk~~~----------------------- 58 (435)
T COG3706 13 KEVATAKKGLIALAIL-----------LDHKPDYKLLDVMMPGMDGFELCRRLKAEP----------------------- 58 (435)
T ss_pred hhhhhccchHHHHHHH-----------hcCCCCeEEeecccCCcCchhHHHHHhcCC-----------------------
Confidence 5677799999999999 778999999999999999999999999621
Q ss_pred hccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 134 SICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
..++++|.....+...+.+++|+++|++||++-..+..-...+.+
T Consensus 59 ------------------------~~~v~~t~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~~l~~ 103 (435)
T COG3706 59 ------------------------ATVVMVTALDDSAPRVRGLKAGADDFLTKPVNDSQLFLRAKSLVR 103 (435)
T ss_pred ------------------------cceEEEEecCCCCcchhHHhhhhhhhccCCCChHHHHHhhhhhcc
Confidence 228889999999999999999999999999998887444444433
No 83
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.98 E-value=5.9e-05 Score=46.46 Aligned_cols=55 Identities=35% Similarity=0.532 Sum_probs=48.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCC
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp 95 (276)
++|++++|+...+..+.+.+...|+++..+.++.++++.+ ....+|++++|+.++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELL-----------KEEKPDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHH-----------HhcCCCEEEEeccCC
Confidence 3789999999999999999999999999999999999887 455799999998654
No 84
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.39 E-value=0.002 Score=52.17 Aligned_cols=105 Identities=17% Similarity=0.182 Sum_probs=73.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEE-EEecCCCCCCHHHHHHHHHhh
Q 023816 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLI-ITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlI-L~D~~mp~~~G~ell~~Ir~~ 109 (276)
||||||||..-+..|+.+|+-.|+.+..+....- .... .....+.+ +..-..+ ...+.++.+.+.
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~-----------~~~~~~~~~v~~g~~~--~~~~~l~~l~~~ 66 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQAD-----------WSSPWEACAVILGSCS--KLAELLKELLKW 66 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhh-----------hhcCCcEEEEEecCch--hHHHHHHHHHhh
Confidence 6999999999999999999999999998886543 1111 12233333 3333333 566788899888
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
.| .+||+++......... ..+-+-|..|++
T Consensus 67 ~~---------------------------------------------~~Pvlllg~~~~~~~~-----~nvvg~Le~Pl~ 96 (109)
T PF06490_consen 67 AP---------------------------------------------HIPVLLLGEHDSPEEL-----PNVVGELEEPLN 96 (109)
T ss_pred CC---------------------------------------------CCCEEEECCCCccccc-----cCeeEecCCCCC
Confidence 87 8999999877665111 115666889999
Q ss_pred HHHHHHHHHH
Q 023816 190 LSDVKRIKDY 199 (276)
Q Consensus 190 ~~~L~~~~~~ 199 (276)
..+|...+.+
T Consensus 97 Y~qLt~~L~~ 106 (109)
T PF06490_consen 97 YPQLTDALHR 106 (109)
T ss_pred HHHHHHHHHH
Confidence 9998655443
No 85
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=97.16 E-value=0.00072 Score=72.38 Aligned_cols=52 Identities=25% Similarity=0.146 Sum_probs=44.7
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCC
Q 023816 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM 94 (276)
Q Consensus 26 ~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~m 94 (276)
..++.+||+|||++.+++.+.++|+..||+|..++++ . .+..||+||+|+++
T Consensus 686 ~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~------~-----------~~~~~Dlvl~D~~~ 737 (894)
T PRK10618 686 LLDGVTVLLDITSEEVRKIVTRQLENWGATCITPDER------L-----------ISQEYDIFLTDNPS 737 (894)
T ss_pred cCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCcc------c-----------cCCCCCEEEECCCC
Confidence 3456899999999999999999999999999998763 1 45579999999984
No 86
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=96.81 E-value=0.036 Score=45.25 Aligned_cols=103 Identities=15% Similarity=0.043 Sum_probs=73.5
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCC--HHHHHHHHHhhC
Q 023816 36 DDSFVDRKVIERLLTISSCKVTAV---DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT--GYELLKKIKVTT 110 (276)
Q Consensus 36 dD~~~~~~~L~~~L~~~g~~v~~a---~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~--G~ell~~Ir~~~ 110 (276)
|.+..=...+..+|+..||+|... ...++.++.+ .+.++|+|.+...+...- --++++.+++..
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a-----------~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~ 78 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAA-----------IQEDVDVIGLSSLSGGHMTLFPEVIELLRELG 78 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEcccchhhHHHHHHHHHHHHhcC
Confidence 556666677888899999999983 3467777777 677899999988765322 235566666543
Q ss_pred CCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCH
Q 023816 111 PFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL 190 (276)
Q Consensus 111 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~ 190 (276)
+ +-+.+++-+....+...+..++|.+.|+-.-.+.
T Consensus 79 ~---------------------------------------------~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~ 113 (122)
T cd02071 79 A---------------------------------------------GDILVVGGGIIPPEDYELLKEMGVAEIFGPGTSI 113 (122)
T ss_pred C---------------------------------------------CCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCH
Confidence 3 3344556655556677888899999999998777
Q ss_pred HHHH
Q 023816 191 SDVK 194 (276)
Q Consensus 191 ~~L~ 194 (276)
+++.
T Consensus 114 ~~~~ 117 (122)
T cd02071 114 EEII 117 (122)
T ss_pred HHHH
Confidence 7763
No 87
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=96.64 E-value=0.027 Score=45.88 Aligned_cols=96 Identities=17% Similarity=0.208 Sum_probs=74.3
Q ss_pred HHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC--CCHHHHHHHHHhhCCCCcccchh
Q 023816 42 RKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG--MTGYELLKKIKVTTPFNFLYSTI 119 (276)
Q Consensus 42 ~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~--~~G~ell~~Ir~~~p~~~~~~~~ 119 (276)
.+.|...|+..|++|+.+.+.++++..+. ....++.|++||. ++ ....+++++|++...
T Consensus 6 ~~~l~~~L~~~~~~vv~~~~~dd~~~~i~----------~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~-------- 66 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDADSTDDALAIIE----------SFTDIAAVVISWD-GEEEDEAQELLDKIRERNF-------- 66 (115)
T ss_dssp HHHHHHHHHHTTTEEEEESSHHHHHHHHH----------CTTTEEEEEEECH-HHHHHHHHHHHHHHHHHST--------
T ss_pred HHHHHHHHHHCCCEEEEeCChHHHHHHHH----------hCCCeeEEEEEcc-cccchhHHHHHHHHHHhCC--------
Confidence 35677788889999999999999999994 3457999999997 22 235678999998776
Q ss_pred eehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHH
Q 023816 120 IVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV 193 (276)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L 193 (276)
.+||.+++.....+.+....-..+++|+-..-+-.+.
T Consensus 67 -------------------------------------~iPVFl~~~~~~~~~l~~~~l~~v~~~i~l~~~t~~f 103 (115)
T PF03709_consen 67 -------------------------------------GIPVFLLAERDTTEDLPAEVLGEVDGFIWLFEDTAEF 103 (115)
T ss_dssp -------------------------------------T-EEEEEESCCHHHCCCHHHHCCESEEEETTTTTHHH
T ss_pred -------------------------------------CCCEEEEecCCCcccCCHHHHhhccEEEEecCCCHHH
Confidence 8999999987765555556666788999987766665
No 88
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=96.47 E-value=0.13 Score=43.41 Aligned_cols=110 Identities=15% Similarity=0.070 Sum_probs=78.3
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHhhCCCEEEEEC---CHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC--C
Q 023816 28 EEVHVLAV----DDSFVDRKVIERLLTISSCKVTAVD---SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM--T 98 (276)
Q Consensus 28 ~~~~VLIV----dD~~~~~~~L~~~L~~~g~~v~~a~---~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~--~ 98 (276)
.+.+||+. |.+..-...+..+|+..||+|+... ..++.++.+ .+..+|+|.+...+... .
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a-----------~~~~~d~V~lS~~~~~~~~~ 70 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAA-----------IETDADAILVSSLYGHGEID 70 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEcCccccCHHH
Confidence 45677777 7778888889999999999999843 467777777 67789999999887743 2
Q ss_pred HHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCC------CHHHH
Q 023816 99 GYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSEN------ILARI 172 (276)
Q Consensus 99 G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~------~~~~~ 172 (276)
..++++++++..+ +.++| ++-+.- ..+..
T Consensus 71 ~~~~~~~L~~~~~--------------------------------------------~~~~i-~vGG~~~~~~~~~~~~~ 105 (137)
T PRK02261 71 CRGLREKCIEAGL--------------------------------------------GDILL-YVGGNLVVGKHDFEEVE 105 (137)
T ss_pred HHHHHHHHHhcCC--------------------------------------------CCCeE-EEECCCCCCccChHHHH
Confidence 3467777775422 13443 333322 34466
Q ss_pred HHHHhcCCCeEEeCCCCHHHH
Q 023816 173 DRCLEDGAEDFIVKPVKLSDV 193 (276)
Q Consensus 173 ~~al~~Ga~d~l~KPv~~~~L 193 (276)
.++.+.|++.+.....+.+++
T Consensus 106 ~~l~~~G~~~vf~~~~~~~~i 126 (137)
T PRK02261 106 KKFKEMGFDRVFPPGTDPEEA 126 (137)
T ss_pred HHHHHcCCCEEECcCCCHHHH
Confidence 788999998888888776666
No 89
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=96.27 E-value=0.06 Score=43.14 Aligned_cols=96 Identities=11% Similarity=0.094 Sum_probs=66.6
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC--CCHHHHHHHHHhhC
Q 023816 36 DDSFVDRKVIERLLTISSCKVTAV---DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG--MTGYELLKKIKVTT 110 (276)
Q Consensus 36 dD~~~~~~~L~~~L~~~g~~v~~a---~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~--~~G~ell~~Ir~~~ 110 (276)
|....-...+..+|+..||+|... .+.++.++.+ .+.+||+|.+...+.. .+..++++.+|+..
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~-----------~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~ 78 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAA-----------KEEDADAIGLSGLLTTHMTLMKEVIEELKEAG 78 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEeccccccHHHHHHHHHHHHHcC
Confidence 556667788999999999999763 3456777777 6778999999886544 23456777777642
Q ss_pred CCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 111 PFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 111 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
+ +-+.|++.+.........+.+.|++.|+...
T Consensus 79 ~---------------------------------------------~~~~i~vGG~~~~~~~~~~~~~G~D~~~~~~ 110 (119)
T cd02067 79 L---------------------------------------------DDIPVLVGGAIVTRDFKFLKEIGVDAYFGPA 110 (119)
T ss_pred C---------------------------------------------CCCeEEEECCCCChhHHHHHHcCCeEEECCH
Confidence 2 2344556665555555678899997776643
No 90
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=96.19 E-value=0.28 Score=41.26 Aligned_cols=105 Identities=14% Similarity=0.069 Sum_probs=69.6
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC-CC-HHHHHHHHHhhC
Q 023816 36 DDSFVDRKVIERLLTISSCKVTA---VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-MT-GYELLKKIKVTT 110 (276)
Q Consensus 36 dD~~~~~~~L~~~L~~~g~~v~~---a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~-~~-G~ell~~Ir~~~ 110 (276)
|-+..-.+.+..+|+..||+|.. ..+.++.++.+ .+.++|+|.+.-.+.. +. --++++.|++..
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa-----------~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g 81 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQA-----------VEADVHVVGVSSLAGGHLTLVPALRKELDKLG 81 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEcCchhhhHHHHHHHHHHHHhcC
Confidence 34445556788899999999987 44678888887 5678999887755432 11 224555565422
Q ss_pred CCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCH
Q 023816 111 PFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL 190 (276)
Q Consensus 111 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~ 190 (276)
+ ..++ |++-+....++..+..++|+++|+..--+.
T Consensus 82 ~--------------------------------------------~~i~-vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~ 116 (132)
T TIGR00640 82 R--------------------------------------------PDIL-VVVGGVIPPQDFDELKEMGVAEIFGPGTPI 116 (132)
T ss_pred C--------------------------------------------CCCE-EEEeCCCChHhHHHHHHCCCCEEECCCCCH
Confidence 2 1333 444433445567788899999999998887
Q ss_pred HHHHHH
Q 023816 191 SDVKRI 196 (276)
Q Consensus 191 ~~L~~~ 196 (276)
.++...
T Consensus 117 ~~i~~~ 122 (132)
T TIGR00640 117 PESAIF 122 (132)
T ss_pred HHHHHH
Confidence 776443
No 91
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=94.55 E-value=0.47 Score=50.35 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=51.9
Q ss_pred cEEEEEeCCH-HH-----HHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHH
Q 023816 30 VHVLAVDDSF-VD-----RKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELL 103 (276)
Q Consensus 30 ~~VLIVdD~~-~~-----~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell 103 (276)
++|+||+++. .+ .+.|.+.|+..||+|..+.+.++++..+. .....+.|++|+.-. ..+++
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~---~~~~~ 67 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIE----------HNPRICGVIFDWDEY---SLDLC 67 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHh----------cccceeEEEEecccc---hHHHH
Confidence 4688887764 11 45567778889999999999999999883 345688999996432 35588
Q ss_pred HHHHhhCC
Q 023816 104 KKIKVTTP 111 (276)
Q Consensus 104 ~~Ir~~~p 111 (276)
+++|+...
T Consensus 68 ~~~~~~~~ 75 (713)
T PRK15399 68 SDINQLNE 75 (713)
T ss_pred HHHHHhCC
Confidence 99987665
No 92
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=94.44 E-value=0.51 Score=37.24 Aligned_cols=64 Identities=14% Similarity=0.150 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhcccccccccCCCCCceeEEEEec-CCCCC-CHHHHHHHHHhhCC
Q 023816 37 DSFVDRKVIERLLTISSCKVTAV---DSGRRALQFLGLDEEQSINGFDGLKVDLIITDY-CMPGM-TGYELLKKIKVTTP 111 (276)
Q Consensus 37 D~~~~~~~L~~~L~~~g~~v~~a---~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~-~mp~~-~G~ell~~Ir~~~p 111 (276)
-.+.-...+..+|++.||+|... .+.++..+.+ ...+||+|.+.. ..+.. ...++++.+|+..|
T Consensus 12 ~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~-----------~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p 80 (121)
T PF02310_consen 12 VHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEAL-----------RAERPDVVGISVSMTPNLPEAKRLARAIKERNP 80 (121)
T ss_dssp STSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHH-----------HHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCT
T ss_pred chhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHH-----------hcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCC
Confidence 34667888999999999999875 2346666666 556899999998 44443 35678888887666
No 93
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=94.09 E-value=0.55 Score=49.83 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=51.2
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHH
Q 023816 30 VHVLAVDDSF-V-----DRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELL 103 (276)
Q Consensus 30 ~~VLIVdD~~-~-----~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell 103 (276)
++||+|+++. . -.+.|.+.|+..||+|..+.+.++++..+. .....+.|++|+.- ...+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~---~~~~~~ 67 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIE----------NNARLCGVIFDWDK---YNLELC 67 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh----------cccceeEEEEecch---hhHHHH
Confidence 4678887662 1 145677788899999999999999999883 34568899999643 225588
Q ss_pred HHHHhhCC
Q 023816 104 KKIKVTTP 111 (276)
Q Consensus 104 ~~Ir~~~p 111 (276)
+.+|+...
T Consensus 68 ~~~~~~~~ 75 (714)
T PRK15400 68 EEISKMNE 75 (714)
T ss_pred HHHHHhCC
Confidence 88987655
No 94
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=93.52 E-value=0.25 Score=46.25 Aligned_cols=41 Identities=24% Similarity=0.070 Sum_probs=33.8
Q ss_pred EE-EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHH
Q 023816 160 VV-IMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 200 (276)
Q Consensus 160 iV-~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l 200 (276)
+| +.....+.+....|++.|+.||+.+|+...+|.+.+..+
T Consensus 44 vv~v~~~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 44 VVLVGGGEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADL 85 (322)
T ss_pred EEEEeCCCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhh
Confidence 55 444466788999999999999999999999997777665
No 95
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=93.05 E-value=3.6 Score=35.61 Aligned_cols=118 Identities=17% Similarity=0.134 Sum_probs=78.2
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC-C-C
Q 023816 28 EEVHVLAV----DDSFVDRKVIERLLTISSCKVTA---VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-M-T 98 (276)
Q Consensus 28 ~~~~VLIV----dD~~~~~~~L~~~L~~~g~~v~~---a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~-~-~ 98 (276)
...+||+. |-...-.+++.+.|...||+|.. ..+.+|+++.+ .+...|+|.+...-.+ + .
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA-----------~~~dv~vIgvSsl~g~h~~l 79 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAA-----------VEEDVDVIGVSSLDGGHLTL 79 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHH-----------HhcCCCEEEEEeccchHHHH
Confidence 46677765 66667789999999999999987 77899999887 5567888776542111 1 1
Q ss_pred HHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhc
Q 023816 99 GYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLED 178 (276)
Q Consensus 99 G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~ 178 (276)
.-++.+.+|+... .++. |+.-+.-..++..+..+.
T Consensus 80 ~~~lve~lre~G~--------------------------------------------~~i~-v~~GGvip~~d~~~l~~~ 114 (143)
T COG2185 80 VPGLVEALREAGV--------------------------------------------EDIL-VVVGGVIPPGDYQELKEM 114 (143)
T ss_pred HHHHHHHHHHhCC--------------------------------------------cceE-EeecCccCchhHHHHHHh
Confidence 2345555555433 2333 344444445666777789
Q ss_pred CCCeEEeCCCCHHHH-HHHHHHHH
Q 023816 179 GAEDFIVKPVKLSDV-KRIKDYLT 201 (276)
Q Consensus 179 Ga~d~l~KPv~~~~L-~~~~~~l~ 201 (276)
|++.++..-.+..+. ..+++.+.
T Consensus 115 G~~~if~pgt~~~~~~~~v~~~l~ 138 (143)
T COG2185 115 GVDRIFGPGTPIEEALSDLLTRLG 138 (143)
T ss_pred CcceeeCCCCCHHHHHHHHHHHHH
Confidence 999999987777775 34444443
No 96
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=92.22 E-value=3.6 Score=35.02 Aligned_cols=59 Identities=15% Similarity=0.099 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCC--HHHHHHHHHh
Q 023816 39 FVDRKVIERLLTISSCKVTA---VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT--GYELLKKIKV 108 (276)
Q Consensus 39 ~~~~~~L~~~L~~~g~~v~~---a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~--G~ell~~Ir~ 108 (276)
..-.+.+..+|+..||+|.. .-+.++.++.+ .+..+|+|.+...|...- --++.+++++
T Consensus 15 diGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa-----------~~~~adiVglS~l~~~~~~~~~~~~~~l~~ 78 (134)
T TIGR01501 15 AVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAA-----------IETKADAILVSSLYGHGEIDCKGLRQKCDE 78 (134)
T ss_pred hHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEecccccCHHHHHHHHHHHHH
Confidence 34456788899999999997 44677788777 567899999998775322 3345666664
No 97
>PRK00208 thiG thiazole synthase; Reviewed
Probab=91.06 E-value=3.3 Score=38.96 Aligned_cols=29 Identities=17% Similarity=0.421 Sum_probs=26.3
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+|||+=.+-..++++.+|++.|++..+.
T Consensus 175 ~vpVIveaGI~tpeda~~AmelGAdgVlV 203 (250)
T PRK00208 175 DVPVIVDAGIGTPSDAAQAMELGADAVLL 203 (250)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 68999888888999999999999999865
No 98
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=90.05 E-value=2.2 Score=39.98 Aligned_cols=29 Identities=17% Similarity=0.421 Sum_probs=26.1
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++|||+=.+-...++..+|++.||+..+.
T Consensus 175 ~vpVI~egGI~tpeda~~AmelGAdgVlV 203 (248)
T cd04728 175 DVPVIVDAGIGTPSDAAQAMELGADAVLL 203 (248)
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 68998888888999999999999999865
No 99
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=89.75 E-value=3.1 Score=37.55 Aligned_cols=70 Identities=11% Similarity=0.134 Sum_probs=51.7
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHhhCCCEEEEEC---CHHHHHHHhcccccccccCCCCCceeEEEEecCCCC-CC-H
Q 023816 29 EVHVLAV----DDSFVDRKVIERLLTISSCKVTAVD---SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-MT-G 99 (276)
Q Consensus 29 ~~~VLIV----dD~~~~~~~L~~~L~~~g~~v~~a~---~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~-~~-G 99 (276)
.-+|++. |.+.+=...+..+|+..||+|+... ..++.++.+ .+.++|+|.+...|+. +. -
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~-----------~~~~~~~V~lS~~~~~~~~~~ 156 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAA-----------KEHKADIIGLSGLLVPSLDEM 156 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEccchhccHHHH
Confidence 4567766 6677777888889999999999843 466777777 6789999999988764 22 3
Q ss_pred HHHHHHHHhh
Q 023816 100 YELLKKIKVT 109 (276)
Q Consensus 100 ~ell~~Ir~~ 109 (276)
.++++.|++.
T Consensus 157 ~~~i~~L~~~ 166 (213)
T cd02069 157 VEVAEEMNRR 166 (213)
T ss_pred HHHHHHHHhc
Confidence 4567777754
No 100
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=89.29 E-value=5 Score=31.31 Aligned_cols=47 Identities=13% Similarity=0.291 Sum_probs=34.4
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHHh
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTRD 203 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~~~ 203 (276)
++-+|........+....+++.|..=|+.||+ +.+++.++++...+.
T Consensus 64 D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 64 DAVIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp SEEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred CEEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 33444444444567788999999999999999 788888877766654
No 101
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=88.02 E-value=8.2 Score=31.12 Aligned_cols=61 Identities=18% Similarity=0.159 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhCCCEEEEE--CCHHHHHHHhcccccccccCCCC-CceeEEEEecCCCCC-CHHHHHHHHHhhCC
Q 023816 40 VDRKVIERLLTISSCKVTAV--DSGRRALQFLGLDEEQSINGFDG-LKVDLIITDYCMPGM-TGYELLKKIKVTTP 111 (276)
Q Consensus 40 ~~~~~L~~~L~~~g~~v~~a--~~g~~al~~l~~~~~~~~~~~~~-~~~DlIL~D~~mp~~-~G~ell~~Ir~~~p 111 (276)
.-...+..+|...|+.+... ...++.++.+ .. .+||+|.+...-... ...++++.||+..|
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~-----------~~~~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p 67 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDI-----------KELLKPDVVGISLMTSAIYEALELAKIAKEVLP 67 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHH-----------HHhcCCCEEEEeeccccHHHHHHHHHHHHHHCC
Confidence 34567888899899887663 3455566665 33 689999998744443 46679999998777
No 102
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=87.83 E-value=15 Score=31.11 Aligned_cols=100 Identities=13% Similarity=0.078 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC-CC-HHHHHHHHHhhCCCC
Q 023816 39 FVDRKVIERLLTISSCKVTA---VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-MT-GYELLKKIKVTTPFN 113 (276)
Q Consensus 39 ~~~~~~L~~~L~~~g~~v~~---a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~-~~-G~ell~~Ir~~~p~~ 113 (276)
..-.+.+..+|+..||+|.- ..+.++.++.+ .+.++|+|.+..-|.. +. .-++.+.+++.
T Consensus 13 diGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa-----------~~~~adiVglS~L~t~~~~~~~~~~~~l~~~---- 77 (128)
T cd02072 13 AVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAA-----------IETDADAILVSSLYGHGEIDCKGLREKCDEA---- 77 (128)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEeccccCCHHHHHHHHHHHHHC----
Confidence 34557788899999999987 34667777777 5678999999887754 22 33566666652
Q ss_pred cccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCC-----C-HHHHHHHHhcCCCeEEeCC
Q 023816 114 FLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSEN-----I-LARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~-----~-~~~~~~al~~Ga~d~l~KP 187 (276)
..++++|+ +-+.- + .++..+..+.|++..+...
T Consensus 78 ----------------------------------------gl~~v~vi-vGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pg 116 (128)
T cd02072 78 ----------------------------------------GLKDILLY-VGGNLVVGKQDFEDVEKRFKEMGFDRVFAPG 116 (128)
T ss_pred ----------------------------------------CCCCCeEE-EECCCCCChhhhHHHHHHHHHcCCCEEECcC
Confidence 22344443 33321 1 3345678899999999887
Q ss_pred CCHHHHH
Q 023816 188 VKLSDVK 194 (276)
Q Consensus 188 v~~~~L~ 194 (276)
-+++++.
T Consensus 117 t~~~~i~ 123 (128)
T cd02072 117 TPPEEAI 123 (128)
T ss_pred CCHHHHH
Confidence 7777763
No 103
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=87.80 E-value=9.8 Score=33.56 Aligned_cols=70 Identities=13% Similarity=0.129 Sum_probs=52.3
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC--CH
Q 023816 29 EVHVLAV----DDSFVDRKVIERLLTISSCKVTAV---DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM--TG 99 (276)
Q Consensus 29 ~~~VLIV----dD~~~~~~~L~~~L~~~g~~v~~a---~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~--~G 99 (276)
..+||+. |-+..=...+..+|+..||+|+.. ...++.++.+ .+.+||+|-+...|... ..
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~-----------~~~~~d~v~lS~~~~~~~~~~ 150 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAV-----------KEHKPDILGLSALMTTTMGGM 150 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEeccccccHHHH
Confidence 4577766 666677888999999999999863 2567777777 67799999999877653 34
Q ss_pred HHHHHHHHhh
Q 023816 100 YELLKKIKVT 109 (276)
Q Consensus 100 ~ell~~Ir~~ 109 (276)
.++++.+|+.
T Consensus 151 ~~~i~~lr~~ 160 (201)
T cd02070 151 KEVIEALKEA 160 (201)
T ss_pred HHHHHHHHHC
Confidence 5677777764
No 104
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=86.41 E-value=15 Score=39.12 Aligned_cols=109 Identities=16% Similarity=0.095 Sum_probs=69.8
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC--CH
Q 023816 29 EVHVLAV----DDSFVDRKVIERLLTISSCKVTA---VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM--TG 99 (276)
Q Consensus 29 ~~~VLIV----dD~~~~~~~L~~~L~~~g~~v~~---a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~--~G 99 (276)
..+|++. |.+..-...+..+|+..||+|.. ..+.+++++.+ .+.++|+|.+-.-+... ..
T Consensus 582 rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa-----------~~~~a~ivvlcs~d~~~~e~~ 650 (714)
T PRK09426 582 RPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQA-----------VENDVHVVGVSSLAAGHKTLV 650 (714)
T ss_pred CceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHH-----------HHcCCCEEEEeccchhhHHHH
Confidence 3455544 23344445678889999999965 24567777777 56678888765444332 24
Q ss_pred HHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcC
Q 023816 100 YELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDG 179 (276)
Q Consensus 100 ~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~G 179 (276)
-++++.||+... .+++| ++-+.-..+......++|
T Consensus 651 ~~l~~~Lk~~G~--------------------------------------------~~v~v-l~GG~~~~~~~~~l~~aG 685 (714)
T PRK09426 651 PALIEALKKLGR--------------------------------------------EDIMV-VVGGVIPPQDYDFLYEAG 685 (714)
T ss_pred HHHHHHHHhcCC--------------------------------------------CCcEE-EEeCCCChhhHHHHHhCC
Confidence 567788886432 12333 344432444556788999
Q ss_pred CCeEEeCCCCHHHH
Q 023816 180 AEDFIVKPVKLSDV 193 (276)
Q Consensus 180 a~d~l~KPv~~~~L 193 (276)
+++|+..-.+..++
T Consensus 686 vD~~i~~g~d~~~~ 699 (714)
T PRK09426 686 VAAIFGPGTVIADA 699 (714)
T ss_pred CCEEECCCCCHHHH
Confidence 99999998888776
No 105
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=85.30 E-value=15 Score=32.59 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=25.4
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
.+||++..+-...+.+.++++.||+.++.=
T Consensus 173 ~iPvia~GGI~t~~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 173 GCPVIAEGRINTPEQAKKALELGAHAVVVG 202 (221)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEEc
Confidence 589888887778999999999999988663
No 106
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=83.98 E-value=4.1 Score=37.95 Aligned_cols=46 Identities=17% Similarity=0.356 Sum_probs=36.4
Q ss_pred CCeEEEEecCC------CHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSEN------ILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 157 ~ipiV~ls~~~------~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
++|+|+|+=.+ ......+|.++|+++.|...+..++....+..+..
T Consensus 89 ~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~ 140 (258)
T PRK13111 89 TIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKK 140 (258)
T ss_pred CCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 78999998554 44568899999999999998888887766666544
No 107
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=83.05 E-value=15 Score=28.56 Aligned_cols=93 Identities=15% Similarity=0.114 Sum_probs=57.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCH-HHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSG-RRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g-~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
.+|.+||.++...+.+ ...|+.+...+-. .+.++.++ -.+.+.|++...- +.....++..+|+
T Consensus 22 ~~vvvid~d~~~~~~~----~~~~~~~i~gd~~~~~~l~~a~-----------i~~a~~vv~~~~~-d~~n~~~~~~~r~ 85 (116)
T PF02254_consen 22 IDVVVIDRDPERVEEL----REEGVEVIYGDATDPEVLERAG-----------IEKADAVVILTDD-DEENLLIALLARE 85 (116)
T ss_dssp SEEEEEESSHHHHHHH----HHTTSEEEES-TTSHHHHHHTT-----------GGCESEEEEESSS-HHHHHHHHHHHHH
T ss_pred CEEEEEECCcHHHHHH----HhcccccccccchhhhHHhhcC-----------ccccCEEEEccCC-HHHHHHHHHHHHH
Confidence 5788888887664433 3456776664332 45666662 2357777777642 2345667778887
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
..| ..++++.. .+........+.|++..+.
T Consensus 86 ~~~---------------------------------------------~~~ii~~~--~~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 86 LNP---------------------------------------------DIRIIARV--NDPENAELLRQAGADHVIS 115 (116)
T ss_dssp HTT---------------------------------------------TSEEEEEE--SSHHHHHHHHHTT-SEEEE
T ss_pred HCC---------------------------------------------CCeEEEEE--CCHHHHHHHHHCCcCEEEC
Confidence 666 57777666 3455666777899987664
No 108
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=82.83 E-value=5.5 Score=36.88 Aligned_cols=46 Identities=17% Similarity=0.369 Sum_probs=37.4
Q ss_pred CCeEEEEecCCC------HHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENI------LARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 157 ~ipiV~ls~~~~------~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
++|+++|+-++. .....++.++|++..+......++....+..+..
T Consensus 87 ~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~ 138 (256)
T TIGR00262 87 NIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKK 138 (256)
T ss_pred CCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHH
Confidence 689888888775 6778899999999999998888887766666654
No 109
>PRK12704 phosphodiesterase; Provisional
Probab=81.44 E-value=3.5 Score=42.19 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=32.3
Q ss_pred CeEEEEecCCCHH--HHHHHHhcCCCeEEeCCCCHHHHHH
Q 023816 158 IPVVIMSSENILA--RIDRCLEDGAEDFIVKPVKLSDVKR 195 (276)
Q Consensus 158 ipiV~ls~~~~~~--~~~~al~~Ga~d~l~KPv~~~~L~~ 195 (276)
.-+|++|+.+... ....+++.|+.|++.||+..+++..
T Consensus 250 p~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~ 289 (520)
T PRK12704 250 PEAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVE 289 (520)
T ss_pred CCeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHH
Confidence 4678899888765 7889999999999999999999843
No 110
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=81.28 E-value=11 Score=33.28 Aligned_cols=63 Identities=11% Similarity=0.104 Sum_probs=46.0
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEEEC---CHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC-C-HHHHHHHHHhh
Q 023816 36 DDSFVDRKVIERLLTISSCKVTAVD---SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM-T-GYELLKKIKVT 109 (276)
Q Consensus 36 dD~~~~~~~L~~~L~~~g~~v~~a~---~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~-~-G~ell~~Ir~~ 109 (276)
|.+.+-...+..+|+..||+|+... ..++.++.+ ++.+||+|.+...|... . -.++++.+|+.
T Consensus 95 d~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~-----------~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~ 162 (197)
T TIGR02370 95 DVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKV-----------KKEKPLMLTGSALMTTTMYGQKDINDKLKEE 162 (197)
T ss_pred chhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEccccccCHHHHHHHHHHHHHc
Confidence 4556666778889999999999733 456777777 67899999999877643 2 24567777764
No 111
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=81.08 E-value=14 Score=31.63 Aligned_cols=105 Identities=12% Similarity=0.171 Sum_probs=74.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHH-----H
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYE-----L 102 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~e-----l 102 (276)
.+-+.+.||.|-........+|...+.+|+.-... ..+ -...||.+|+.+-.+-.+... +
T Consensus 10 ~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~----~~l-----------p~~hYD~~Ll~vavtfr~n~tm~~~~l 74 (140)
T COG4999 10 AGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTF----SAL-----------PPAHYDMMLLGVAVTFRENLTMQHERL 74 (140)
T ss_pred ccceeEEecCccHHHHHHHHHHhcCCceEEecccc----ccc-----------ChhhhceeeecccccccCCchHHHHHH
Confidence 34578999999999999999999999999875442 222 345799999998766544332 3
Q ss_pred HHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCe
Q 023816 103 LKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAED 182 (276)
Q Consensus 103 l~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d 182 (276)
.+.+.- .+--|+.+.+. .....++....|+.+
T Consensus 75 ~~Al~m-----------------------------------------------td~vilalPs~-~qv~AeqLkQ~g~~~ 106 (140)
T COG4999 75 AKALSM-----------------------------------------------TDFVILALPSH-AQVNAEQLKQDGAGA 106 (140)
T ss_pred HHHHhh-----------------------------------------------hcceEEecCcH-HHHhHHHHhhcchHh
Confidence 333331 13345555543 345677888999999
Q ss_pred EEeCCCCHHHHHH
Q 023816 183 FIVKPVKLSDVKR 195 (276)
Q Consensus 183 ~l~KPv~~~~L~~ 195 (276)
+|.||++.-.|..
T Consensus 107 CllKPls~~rLlp 119 (140)
T COG4999 107 CLLKPLSSTRLLP 119 (140)
T ss_pred HhhCcchhhhhHH
Confidence 9999999888744
No 112
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=80.98 E-value=4.8 Score=36.42 Aligned_cols=54 Identities=20% Similarity=0.213 Sum_probs=41.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecC
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC 93 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~ 93 (276)
+++||+||....+---|..+|+..|+++....|..-.+..+ +..+||.|++.--
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~-----------~~~~pd~iviSPG 54 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELI-----------EALKPDAIVISPG 54 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHH-----------hhcCCCEEEEcCC
Confidence 36899999877777889999999999998877763333333 5668999998853
No 113
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=80.60 E-value=46 Score=30.83 Aligned_cols=29 Identities=24% Similarity=0.215 Sum_probs=25.8
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
..++|..++-...+++.++++.|++.++.
T Consensus 211 ~~~vIaegGI~t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 211 DRLVVSESGIFTPEDLKRLAKAGADAVLV 239 (260)
T ss_pred CCEEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 35889999999999999999999999865
No 114
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=80.06 E-value=22 Score=33.02 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=53.5
Q ss_pred CCCceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeE
Q 023816 81 DGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPV 160 (276)
Q Consensus 81 ~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipi 160 (276)
....||.|++|.+=...|--++...|+.... ..++.
T Consensus 37 a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~--------------------------------------------~g~~~ 72 (256)
T PRK10558 37 GLAGFDWLVLDGEHAPNDVSTFIPQLMALKG--------------------------------------------SASAP 72 (256)
T ss_pred HhcCCCEEEEccccCCCCHHHHHHHHHHHhh--------------------------------------------cCCCc
Confidence 3456999999998888887777777775332 14555
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHH-HHHHH
Q 023816 161 VIMSSENILARIDRCLEDGAEDFIVKPVKLSD-VKRIK 197 (276)
Q Consensus 161 V~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~-L~~~~ 197 (276)
++=....+...+.++++.|++..+..=++-.+ .++++
T Consensus 73 lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v 110 (256)
T PRK10558 73 VVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAV 110 (256)
T ss_pred EEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHH
Confidence 55566778899999999999999998765444 44443
No 115
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=78.93 E-value=41 Score=30.53 Aligned_cols=91 Identities=16% Similarity=0.169 Sum_probs=58.3
Q ss_pred HHHHhhCCC-EEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhh
Q 023816 46 ERLLTISSC-KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLN 124 (276)
Q Consensus 46 ~~~L~~~g~-~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~ 124 (276)
.+.|...+. -|....+.++|++.+..- .+..+++|=+-+. .-++++.++++++..|
T Consensus 9 ~~~l~~~~~iaV~r~~~~~~a~~i~~al--------~~~Gi~~iEitl~--~~~~~~~I~~l~~~~p------------- 65 (212)
T PRK05718 9 EEILRAGPVVPVIVINKLEDAVPLAKAL--------VAGGLPVLEVTLR--TPAALEAIRLIAKEVP------------- 65 (212)
T ss_pred HHHHHHCCEEEEEEcCCHHHHHHHHHHH--------HHcCCCEEEEecC--CccHHHHHHHHHHHCC-------------
Confidence 344555553 556678888888877332 2334554433343 4479999999998776
Q ss_pred hhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHH
Q 023816 125 LQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV 193 (276)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L 193 (276)
++.|-+=|- -+.+..+.|+++|| +|++-|.--.++
T Consensus 66 --------------------------------~~~IGAGTV-l~~~~a~~a~~aGA-~FivsP~~~~~v 100 (212)
T PRK05718 66 --------------------------------EALIGAGTV-LNPEQLAQAIEAGA-QFIVSPGLTPPL 100 (212)
T ss_pred --------------------------------CCEEEEeec-cCHHHHHHHHHcCC-CEEECCCCCHHH
Confidence 444443333 34477889999999 577777655565
No 116
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=77.65 E-value=49 Score=29.09 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=26.1
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++|+++..+-...+++.++++.|++.++.
T Consensus 172 ~~pvia~gGI~s~edi~~~~~~Ga~gviv 200 (217)
T cd00331 172 DVILVSESGISTPEDVKRLAEAGADAVLI 200 (217)
T ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCEEEE
Confidence 57999889888899999999999999875
No 117
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=77.17 E-value=27 Score=33.12 Aligned_cols=83 Identities=19% Similarity=0.127 Sum_probs=56.4
Q ss_pred HHHHHhhCCCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecC-C----CCCCHHHHHHHHHhhCCCCcccch
Q 023816 45 IERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC-M----PGMTGYELLKKIKVTTPFNFLYST 118 (276)
Q Consensus 45 L~~~L~~~g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~-m----p~~~G~ell~~Ir~~~p~~~~~~~ 118 (276)
+-+.++..|..|.. +.+.++|.+.. +...|.|++.-. - ...+-+++++++++..
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~------------~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~-------- 160 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRME------------KAGADAVIAEGMESGGHIGELTTMALVPQVVDAV-------- 160 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHH------------HcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHh--------
Confidence 44456667777654 67777775544 346788776332 1 1223477788887522
Q ss_pred heehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 119 IIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++|||+--+-.+...+..++..||+....
T Consensus 161 --------------------------------------~iPviaaGGI~~~~~~~~al~~GA~gV~i 189 (307)
T TIGR03151 161 --------------------------------------SIPVIAAGGIADGRGMAAAFALGAEAVQM 189 (307)
T ss_pred --------------------------------------CCCEEEECCCCCHHHHHHHHHcCCCEeec
Confidence 48988888888888899999999988765
No 118
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=77.05 E-value=40 Score=29.84 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=25.6
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++|+++-.+-...+++.++++.||+.++.
T Consensus 189 ~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 189 NVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 68988888888999999999999999876
No 119
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=76.91 E-value=23 Score=30.83 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=54.2
Q ss_pred HHhhCCCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhhhh
Q 023816 48 LLTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQ 126 (276)
Q Consensus 48 ~L~~~g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~ 126 (276)
..+..+..+. .+.+.+|+.+.+ +..+|.|-++- .+.. |.+.++.++...|
T Consensus 92 ~~~~~~~~~i~gv~t~~e~~~A~------------~~Gad~i~~~p-~~~~-g~~~~~~l~~~~~--------------- 142 (190)
T cd00452 92 AANRAGIPLLPGVATPTEIMQAL------------ELGADIVKLFP-AEAV-GPAYIKALKGPFP--------------- 142 (190)
T ss_pred HHHHcCCcEECCcCCHHHHHHHH------------HCCCCEEEEcC-Cccc-CHHHHHHHHhhCC---------------
Confidence 3344555543 477888887766 34678888753 3333 9999999986544
Q ss_pred hhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 127 NLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
++|+++.- .-..+.+.+.++.|++..-.-
T Consensus 143 ------------------------------~~p~~a~G-GI~~~n~~~~~~~G~~~v~v~ 171 (190)
T cd00452 143 ------------------------------QVRFMPTG-GVSLDNAAEWLAAGVVAVGGG 171 (190)
T ss_pred ------------------------------CCeEEEeC-CCCHHHHHHHHHCCCEEEEEc
Confidence 56766554 457888999999998777554
No 120
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=76.35 E-value=44 Score=29.58 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=25.6
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
.+||++..+-.+.+.+.++++.||+.++.=
T Consensus 177 ~ipvia~GGI~~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 177 GIPVIAEGRINSPEQAAKALELGADAVVVG 206 (219)
T ss_pred CCCEEEeCCCCCHHHHHHHHHCCCCEEEEc
Confidence 489988887778899999999999988764
No 121
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=76.31 E-value=10 Score=33.40 Aligned_cols=68 Identities=25% Similarity=0.226 Sum_probs=44.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCE---EEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCH---HHHH
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCK---VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG---YELL 103 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~---v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G---~ell 103 (276)
-+|..||-++...+.+++-++..+.. .+...+...++..+.. ....||+|++|- |=..+ .+++
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~---------~~~~fDiIflDP--PY~~~~~~~~~l 134 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK---------KGEKFDIIFLDP--PYAKGLYYEELL 134 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH---------CTS-EEEEEE----STTSCHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc---------cCCCceEEEECC--CcccchHHHHHH
Confidence 47999999999999999999988742 2345676777766521 356899999993 42222 4577
Q ss_pred HHHHh
Q 023816 104 KKIKV 108 (276)
Q Consensus 104 ~~Ir~ 108 (276)
+.|.+
T Consensus 135 ~~l~~ 139 (183)
T PF03602_consen 135 ELLAE 139 (183)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
No 122
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=75.94 E-value=27 Score=30.07 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++||++.-+- ..+.+.++++.|++.+..
T Consensus 160 ~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~ 187 (212)
T PRK00043 160 DIPIVAIGGI-TPENAPEVLEAGADGVAV 187 (212)
T ss_pred CCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 4788766554 678888999999999975
No 123
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=75.89 E-value=14 Score=33.73 Aligned_cols=46 Identities=17% Similarity=0.318 Sum_probs=35.3
Q ss_pred CCeEEEEecCCC------HHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENI------LARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 157 ~ipiV~ls~~~~------~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
.+|+++|+-.+. ......+.++|++..+.-....+++.+.+..+.+
T Consensus 76 ~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~ 127 (242)
T cd04724 76 TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKE 127 (242)
T ss_pred CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHH
Confidence 578888887564 6678889999999999976666777666666654
No 124
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=74.88 E-value=37 Score=31.91 Aligned_cols=68 Identities=19% Similarity=0.201 Sum_probs=51.2
Q ss_pred CCceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEE
Q 023816 82 GLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVV 161 (276)
Q Consensus 82 ~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV 161 (276)
...||.|++|.+=...|--++...|+.... ..+..+
T Consensus 37 ~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~--------------------------------------------~g~~~l 72 (267)
T PRK10128 37 TSGYDWLLIDGEHAPNTIQDLYHQLQAIAP--------------------------------------------YASQPV 72 (267)
T ss_pred HcCCCEEEEccccCCCCHHHHHHHHHHHHh--------------------------------------------cCCCeE
Confidence 346999999998888887777777775332 134445
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHH
Q 023816 162 IMSSENILARIDRCLEDGAEDFIVKPVKLSDV 193 (276)
Q Consensus 162 ~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L 193 (276)
+=....+...+.++|+.||.+.+..=++-.+=
T Consensus 73 VRvp~~~~~~i~r~LD~GA~GIivP~V~saee 104 (267)
T PRK10128 73 IRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQ 104 (267)
T ss_pred EECCCCCHHHHHHHhCCCCCeeEecCcCCHHH
Confidence 55566788899999999999999988765554
No 125
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.67 E-value=35 Score=32.42 Aligned_cols=96 Identities=21% Similarity=0.171 Sum_probs=59.3
Q ss_pred EEEEeCCHHHHHHHHHHHhh---CC--CEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 32 VLAVDDSFVDRKVIERLLTI---SS--CKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 32 VLIVdD~~~~~~~L~~~L~~---~g--~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
|||-|++.... .+.+.++. .. .+|.. +++.+||.+.+ +..+|+|++|-..| .+--++.+.
T Consensus 157 vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~------------~agaDiI~LDn~~~-e~l~~~v~~ 222 (278)
T PRK08385 157 ILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAA------------KAGADIIMLDNMTP-EEIREVIEA 222 (278)
T ss_pred EEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHH------------HcCcCEEEECCCCH-HHHHHHHHH
Confidence 77777775444 45555532 11 34443 89999999887 34679999995422 222233333
Q ss_pred HHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 106 IKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 106 Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++... .++-..+..|+.-..+.+.+..+.|+|-+-+
T Consensus 223 l~~~~--------------------------------------------~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~ 258 (278)
T PRK08385 223 LKREG--------------------------------------------LRERVKIEVSGGITPENIEEYAKLDVDVISL 258 (278)
T ss_pred HHhcC--------------------------------------------cCCCEEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 44321 0123567788888889999999999865543
No 126
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=74.14 E-value=40 Score=34.88 Aligned_cols=109 Identities=13% Similarity=0.149 Sum_probs=65.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhccccccccc----------CCCCCceeEEEEecCCCCCC
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSIN----------GFDGLKVDLIITDYCMPGMT 98 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~----------~~~~~~~DlIL~D~~mp~~~ 98 (276)
+-||+|+.=...-+. +.+.|+..|++++..++-.+.++.+.......+- ...-.+.|+++.-..= +.+
T Consensus 400 ~~~vII~G~Gr~G~~-va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d-~~~ 477 (601)
T PRK03659 400 KPQVIIVGFGRFGQV-IGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNE-PED 477 (601)
T ss_pred cCCEEEecCchHHHH-HHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCC-HHH
Confidence 467888887776664 4456677888888887777777766321110000 0011124444443321 123
Q ss_pred HHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhc
Q 023816 99 GYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLED 178 (276)
Q Consensus 99 G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~ 178 (276)
...++..+|+..| +++|++-+ .+........++
T Consensus 478 n~~i~~~~r~~~p---------------------------------------------~~~IiaRa--~~~~~~~~L~~~ 510 (601)
T PRK03659 478 TMKIVELCQQHFP---------------------------------------------HLHILARA--RGRVEAHELLQA 510 (601)
T ss_pred HHHHHHHHHHHCC---------------------------------------------CCeEEEEe--CCHHHHHHHHhC
Confidence 4556677777766 77887766 455677788899
Q ss_pred CCCeEEeC
Q 023816 179 GAEDFIVK 186 (276)
Q Consensus 179 Ga~d~l~K 186 (276)
|++..+.-
T Consensus 511 Ga~~vv~e 518 (601)
T PRK03659 511 GVTQFSRE 518 (601)
T ss_pred CCCEEEcc
Confidence 99877653
No 127
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=73.76 E-value=35 Score=29.27 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++||+++-+ -..+.+.++++.|++.+..
T Consensus 152 ~~pv~a~GG-I~~~~~~~~~~~G~~gva~ 179 (196)
T TIGR00693 152 DIPIVAIGG-ITLENAAEVLAAGADGVAV 179 (196)
T ss_pred CCCEEEECC-cCHHHHHHHHHcCCCEEEE
Confidence 578776644 4678888999999988754
No 128
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=73.68 E-value=40 Score=33.97 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHhhCC-CEEEEEC------CHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC-CHHHHHHHHHhh
Q 023816 38 SFVDRKVIERLLTISS-CKVTAVD------SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM-TGYELLKKIKVT 109 (276)
Q Consensus 38 ~~~~~~~L~~~L~~~g-~~v~~a~------~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~-~G~ell~~Ir~~ 109 (276)
.|.-...|...|+..| ++|...+ +.++..+.+ .+..||+|.+...-+.. ...++++.+|+.
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l-----------~~~~pdvVgis~~t~~~~~a~~~~~~~k~~ 89 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERL-----------RAHCPDLVLITAITPAIYIACETLKFARER 89 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHH-----------HhcCcCEEEEecCcccHHHHHHHHHHHHHH
Confidence 4677788999999999 6888764 223333444 55689999987655543 355788888987
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHh-cCCCeEEeCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLE-DGAEDFIVKPV 188 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~-~Ga~d~l~KPv 188 (276)
.| +++||+=-.+. .....++++ ....||+..--
T Consensus 90 ~P---------------------------------------------~~~iV~GG~h~-t~~~~~~l~~~p~vD~Vv~GE 123 (497)
T TIGR02026 90 LP---------------------------------------------NAIIVLGGIHP-TFMFHQVLTEAPWIDFIVRGE 123 (497)
T ss_pred CC---------------------------------------------CCEEEEcCCCc-CcCHHHHHhcCCCccEEEeCC
Confidence 77 66666443322 223455664 34568888876
Q ss_pred CHHHHHHHHHHHHH
Q 023816 189 KLSDVKRIKDYLTR 202 (276)
Q Consensus 189 ~~~~L~~~~~~l~~ 202 (276)
.-..+.++++.+..
T Consensus 124 GE~~~~~Ll~~l~~ 137 (497)
T TIGR02026 124 GEETVVKLIAALEN 137 (497)
T ss_pred cHHHHHHHHHHHHc
Confidence 65556666666543
No 129
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=73.65 E-value=38 Score=33.12 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=31.1
Q ss_pred ccCCCCCeEEEEecCCCHHHHHHHHhc---CCCeEEeCCCCHHHHHHHHHHHH
Q 023816 152 SSALREIPVVIMSSENILARIDRCLED---GAEDFIVKPVKLSDVKRIKDYLT 201 (276)
Q Consensus 152 ~~~~~~ipiV~ls~~~~~~~~~~al~~---Ga~d~l~KPv~~~~L~~~~~~l~ 201 (276)
+.....+|||+-..... .+.++. |-.+|+.+|-+.+++.+.+.++.
T Consensus 350 EAmA~G~PVI~s~~gg~----~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll 398 (465)
T PLN02871 350 EAMASGVPVVAARAGGI----PDIIPPDQEGKTGFLYTPGDVDDCVEKLETLL 398 (465)
T ss_pred HHHHcCCCEEEcCCCCc----HhhhhcCCCCCceEEeCCCCHHHHHHHHHHHH
Confidence 44445789985543332 334455 88999999999999876666554
No 130
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=73.52 E-value=47 Score=30.72 Aligned_cols=72 Identities=15% Similarity=0.107 Sum_probs=53.6
Q ss_pred CCceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEE
Q 023816 82 GLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVV 161 (276)
Q Consensus 82 ~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV 161 (276)
...||.|++|.+=..+|--++...++.... ..++.+
T Consensus 31 ~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~--------------------------------------------~g~~~~ 66 (249)
T TIGR03239 31 LAGFDWLLLDGEHAPNDVLTFIPQLMALKG--------------------------------------------SASAPV 66 (249)
T ss_pred hcCCCEEEEecccCCCCHHHHHHHHHHHhh--------------------------------------------cCCCcE
Confidence 446999999998888888777777775432 145555
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHH-HHHHH
Q 023816 162 IMSSENILARIDRCLEDGAEDFIVKPVKLSD-VKRIK 197 (276)
Q Consensus 162 ~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~-L~~~~ 197 (276)
+=....+...+.++++.|++..+..=++-.+ .++++
T Consensus 67 VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v 103 (249)
T TIGR03239 67 VRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAV 103 (249)
T ss_pred EECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHH
Confidence 5556778899999999999999998775444 44444
No 131
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=73.45 E-value=14 Score=31.35 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=43.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC----CHHHHHHHhcccccccccCCCCCceeEEEEecCCC
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVD----SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~----~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp 95 (276)
.++-+|+|+..+....+-|..+|...|..|+.+. +.+++++. -|+|++-.--+
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~----------------ADIVvsAtg~~ 82 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHD----------------ADVVVVGSPKP 82 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhh----------------CCEEEEecCCC
Confidence 3466999999999999999999999999999988 66665554 48888876544
No 132
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=72.67 E-value=14 Score=35.91 Aligned_cols=55 Identities=16% Similarity=0.144 Sum_probs=42.3
Q ss_pred ceeEEEEecCCCCCC-HHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEE
Q 023816 84 KVDLIITDYCMPGMT-GYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVI 162 (276)
Q Consensus 84 ~~DlIL~D~~mp~~~-G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ 162 (276)
.+|+|.+|.-.+..+ -.+++++||+..| .+|||+
T Consensus 111 ~~d~i~iD~a~gh~~~~~e~I~~ir~~~p---------------------------------------------~~~vi~ 145 (326)
T PRK05458 111 TPEYITIDIAHGHSDSVINMIQHIKKHLP---------------------------------------------ETFVIA 145 (326)
T ss_pred CCCEEEEECCCCchHHHHHHHHHHHhhCC---------------------------------------------CCeEEE
Confidence 469999999887654 5579999998777 677766
Q ss_pred EecCCCHHHHHHHHhcCCCeEE
Q 023816 163 MSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 163 ls~~~~~~~~~~al~~Ga~d~l 184 (276)
=.- ...+....+.++|++-.+
T Consensus 146 g~V-~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 146 GNV-GTPEAVRELENAGADATK 166 (326)
T ss_pred Eec-CCHHHHHHHHHcCcCEEE
Confidence 322 267788899999998865
No 133
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=72.61 E-value=16 Score=34.66 Aligned_cols=68 Identities=22% Similarity=0.249 Sum_probs=46.7
Q ss_pred EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccc
Q 023816 58 AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICF 137 (276)
Q Consensus 58 ~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (276)
-+.+.++|.+.+ ..++|+|++| .|+..+-.++.+.++...+
T Consensus 194 Ev~tleea~ea~------------~~GaDiI~lD-n~~~e~l~~~v~~l~~~~~-------------------------- 234 (277)
T TIGR01334 194 EADTIEQALTVL------------QASPDILQLD-KFTPQQLHHLHERLKFFDH-------------------------- 234 (277)
T ss_pred ECCCHHHHHHHH------------HcCcCEEEEC-CCCHHHHHHHHHHHhccCC--------------------------
Confidence 378999999887 3468999999 3433333444444443222
Q ss_pred cCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 138 CFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
-..|..++.-..+.+.+..+.|++-+.
T Consensus 235 --------------------~~~leasGGI~~~ni~~ya~~GvD~is 261 (277)
T TIGR01334 235 --------------------IPTLAAAGGINPENIADYIEAGIDLFI 261 (277)
T ss_pred --------------------CEEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 346778888889999888899986544
No 134
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=72.50 E-value=20 Score=32.25 Aligned_cols=69 Identities=10% Similarity=0.096 Sum_probs=48.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCC--EEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~--~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
.-+|.-||-++...+..+++++..|+ ++.. ..++.+.+..+..+. ....||+|++|-. ..+-.+.++.
T Consensus 70 ~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~-------~~~~fD~VFiDa~--K~~y~~y~~~ 140 (205)
T PF01596_consen 70 DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDG-------EEGQFDFVFIDAD--KRNYLEYFEK 140 (205)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTT-------TTTSEEEEEEEST--GGGHHHHHHH
T ss_pred cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhcc-------CCCceeEEEEccc--ccchhhHHHH
Confidence 45899999999999999999999886 4554 677888887763211 2347999999974 2333344444
Q ss_pred H
Q 023816 106 I 106 (276)
Q Consensus 106 I 106 (276)
+
T Consensus 141 ~ 141 (205)
T PF01596_consen 141 A 141 (205)
T ss_dssp H
T ss_pred H
Confidence 4
No 135
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=72.43 E-value=35 Score=32.65 Aligned_cols=64 Identities=14% Similarity=0.095 Sum_probs=36.1
Q ss_pred cccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHH-hcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 136 CFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCL-EDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al-~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
+++++-+++.-.+.--++....+|||+-..........+.+ +. +++..|-+.++|.+.+.++..
T Consensus 323 ~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~---g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 323 AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA---GAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC---CCeEEECCHHHHHHHHHHHhc
Confidence 34444444433444455666689998643323333333333 33 466678888889777776654
No 136
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=71.67 E-value=52 Score=29.94 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
..||++=.+=...+.+.++.++|||.++.=-
T Consensus 185 ~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 185 NKYLVVGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred CCCEEEeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 3455433333477888888999999999864
No 137
>PLN02591 tryptophan synthase
Probab=71.40 E-value=16 Score=33.97 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=36.5
Q ss_pred CCeEEEEecCCC------HHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENI------LARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 157 ~ipiV~ls~~~~------~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
++|+|+|+=++. .....+|.++|+++.|...+..++.......+.+
T Consensus 78 ~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~ 129 (250)
T PLN02591 78 SCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAK 129 (250)
T ss_pred CCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 689888887653 4457789999999999999998888776666554
No 138
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=71.38 E-value=52 Score=33.40 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=28.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFL 69 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l 69 (276)
.=||+|+.-...-+...+ .|++.|++++..++-++.++.+
T Consensus 417 ~~hiiI~G~G~~G~~la~-~L~~~g~~vvvId~d~~~~~~~ 456 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGE-KLLAAGIPLVVIETSRTRVDEL 456 (558)
T ss_pred CCCEEEECCChHHHHHHH-HHHHCCCCEEEEECCHHHHHHH
Confidence 357888888877665444 5667788888887766666666
No 139
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=70.98 E-value=66 Score=28.85 Aligned_cols=57 Identities=12% Similarity=0.195 Sum_probs=49.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCC--CEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC
Q 023816 31 HVLAVDDSFVDRKVIERLLTISS--CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG 96 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g--~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~ 96 (276)
++.|+.+++..++.+++.++.+| |.|....+.+++++.+. . .+..++|+..+....+
T Consensus 33 ~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k-~--------~G~vvhLtmyga~~~~ 91 (176)
T PRK03958 33 KIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWK-D--------GGIVVHLTMYGENIQD 91 (176)
T ss_pred eEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHH-h--------CCcEEEEEEecCCccc
Confidence 57899999999999999999997 67889999999999994 1 3557999999988866
No 140
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=70.02 E-value=77 Score=27.86 Aligned_cols=30 Identities=23% Similarity=0.240 Sum_probs=24.9
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
++||++.-+-...+...++++.|++....-
T Consensus 156 ~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 156 DIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 578888777667788999999999988774
No 141
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=69.90 E-value=60 Score=29.88 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=53.1
Q ss_pred CCCceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeE
Q 023816 81 DGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPV 160 (276)
Q Consensus 81 ~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipi 160 (276)
....||.|++|++=...+--++...|+....+ ...+
T Consensus 30 ~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~--------------------------------------------g~~~ 65 (249)
T TIGR02311 30 AGAGFDWLLIDGEHAPNDVRTILSQLQALAPY--------------------------------------------PSSP 65 (249)
T ss_pred HhcCCCEEEEeccCCCCCHHHHHHHHHHHHhc--------------------------------------------CCCc
Confidence 34579999999987777777777777653220 2344
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCC-CHHHHHHHHHHHH
Q 023816 161 VIMSSENILARIDRCLEDGAEDFIVKPV-KLSDVKRIKDYLT 201 (276)
Q Consensus 161 V~ls~~~~~~~~~~al~~Ga~d~l~KPv-~~~~L~~~~~~l~ 201 (276)
++=....+...+.++++.|+++.+..=+ +.++++++++...
T Consensus 66 ~VRv~~~~~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~ 107 (249)
T TIGR02311 66 VVRPAIGDPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAATR 107 (249)
T ss_pred EEECCCCCHHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcC
Confidence 4444556677899999999999977644 5566666665554
No 142
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=69.89 E-value=49 Score=30.35 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=33.4
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC--HHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKPVK--LSDVKRIKDYLTR 202 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~--~~~L~~~~~~l~~ 202 (276)
++-+|+.......+....|+++|..=|+.||+. .++.+++++...+
T Consensus 69 D~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~ 116 (342)
T COG0673 69 DAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARK 116 (342)
T ss_pred CEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 455555555666778899999999999999984 5666655555444
No 143
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=69.53 E-value=72 Score=27.34 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=21.4
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
++|+++. +.-..+.+.++++.||+.++.=
T Consensus 158 ~~~i~~~-GGI~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 158 GVKVAVA-GGITPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred CCCEEEE-CCcCHHHHHHHHhcCCCEEEEe
Confidence 5666554 4445888999999999988653
No 144
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=69.50 E-value=63 Score=31.14 Aligned_cols=51 Identities=10% Similarity=0.094 Sum_probs=37.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECC----HHHHHHHhcccccccccCCCCCceeEEEE
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTA-VDS----GRRALQFLGLDEEQSINGFDGLKVDLIIT 90 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~-a~~----g~~al~~l~~~~~~~~~~~~~~~~DlIL~ 90 (276)
+-+||=+|-++..++..-+.-+++|..+.. +.. .+...+.+ ...+||++++
T Consensus 105 PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll-----------~~~~PDIlVi 160 (287)
T PF05582_consen 105 PGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLL-----------EEYRPDILVI 160 (287)
T ss_pred CCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHH-----------HHcCCCEEEE
Confidence 569999999999888888888889987665 222 22334444 6778998874
No 145
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=68.38 E-value=18 Score=33.88 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=36.3
Q ss_pred CCeEEEEecCCC------HHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENI------LARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 157 ~ipiV~ls~~~~------~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
.+|+|+||=.+. .....+|.++|+++.|......++.......+..
T Consensus 91 ~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~ 142 (263)
T CHL00200 91 KAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNL 142 (263)
T ss_pred CCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHH
Confidence 689889987653 4568899999999999998888887666666543
No 146
>PRK00811 spermidine synthase; Provisional
Probab=68.32 E-value=33 Score=32.01 Aligned_cols=67 Identities=18% Similarity=0.118 Sum_probs=44.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCC------CEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCC----
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISS------CKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT---- 98 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g------~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~---- 98 (276)
-+|.+||=++...+..++.+...+ -++. ...++++.++. ....||+|++|..-|..-
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~------------~~~~yDvIi~D~~dp~~~~~~l 168 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE------------TENSFDVIIVDSTDPVGPAEGL 168 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh------------CCCcccEEEECCCCCCCchhhh
Confidence 479999999999999999886432 2343 35666654433 234799999998655322
Q ss_pred -HHHHHHHHHh
Q 023816 99 -GYELLKKIKV 108 (276)
Q Consensus 99 -G~ell~~Ir~ 108 (276)
..++.+.+++
T Consensus 169 ~t~ef~~~~~~ 179 (283)
T PRK00811 169 FTKEFYENCKR 179 (283)
T ss_pred hHHHHHHHHHH
Confidence 2455555554
No 147
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=68.23 E-value=27 Score=32.06 Aligned_cols=69 Identities=20% Similarity=0.171 Sum_probs=47.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCC-----CEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCH---
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISS-----CKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG--- 99 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g-----~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G--- 99 (276)
..+|-+||=|+...+..++++.... -++. ...+|+.-++.. .+.+||+|++|..-|...+
T Consensus 100 ~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~-----------~~~~yDvIi~D~~dp~~~~~~l 168 (246)
T PF01564_consen 100 VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET-----------QEEKYDVIIVDLTDPDGPAPNL 168 (246)
T ss_dssp -SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS-----------SST-EEEEEEESSSTTSCGGGG
T ss_pred cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc-----------cCCcccEEEEeCCCCCCCcccc
Confidence 3578899999999999999986431 1233 578888877765 2338999999997776443
Q ss_pred --HHHHHHHHh
Q 023816 100 --YELLKKIKV 108 (276)
Q Consensus 100 --~ell~~Ir~ 108 (276)
.|+.+.+++
T Consensus 169 ~t~ef~~~~~~ 179 (246)
T PF01564_consen 169 FTREFYQLCKR 179 (246)
T ss_dssp SSHHHHHHHHH
T ss_pred cCHHHHHHHHh
Confidence 466666665
No 148
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=68.15 E-value=23 Score=27.65 Aligned_cols=65 Identities=8% Similarity=0.025 Sum_probs=48.1
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEEEC---CHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC-CHHHHHHHHHhhCC
Q 023816 36 DDSFVDRKVIERLLTISSCKVTAVD---SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM-TGYELLKKIKVTTP 111 (276)
Q Consensus 36 dD~~~~~~~L~~~L~~~g~~v~~a~---~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~-~G~ell~~Ir~~~p 111 (276)
|-.+.....+..+|+..|+++.... ..++.++.+ ...+||+|.+...+... ..++.+.++++..|
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i-----------~~~~pdiV~iS~~~~~~~~~~~~~~~~~~~~p 78 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAA-----------KEEDADVVGLSALSTTHMEAMKLVIEALKELG 78 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHH-----------HHcCCCEEEEecchHhHHHHHHHHHHHHHhcC
Confidence 5566677888999999999998753 445556655 55789999999866543 45677888887766
No 149
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=68.02 E-value=69 Score=26.68 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=21.9
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++||++.-+- ..+.+.++++.|++.+..
T Consensus 150 ~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~ 177 (196)
T cd00564 150 EIPVVAIGGI-TPENAAEVLAAGADGVAV 177 (196)
T ss_pred CCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 5788877654 567888999999988755
No 150
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=67.33 E-value=56 Score=34.02 Aligned_cols=107 Identities=19% Similarity=0.191 Sum_probs=60.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhccccccccc----------CCCCCceeEEEEecCCCCCC
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSIN----------GFDGLKVDLIITDYCMPGMT 98 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~----------~~~~~~~DlIL~D~~mp~~~ 98 (276)
.-||+|+.=...-+.+ .+.|...|++++..+.-.+.++.+.......+. ...-.+.+++++-..=+ ..
T Consensus 400 ~~~vII~G~Gr~G~~v-a~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~-~~ 477 (621)
T PRK03562 400 QPRVIIAGFGRFGQIV-GRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDP-QT 477 (621)
T ss_pred cCcEEEEecChHHHHH-HHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCH-HH
Confidence 4578888777665544 445666777777777666656555321110000 00112345555444211 22
Q ss_pred HHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhc
Q 023816 99 GYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLED 178 (276)
Q Consensus 99 G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~ 178 (276)
-..++..+|+.+| +++|++-+ .+.....+..++
T Consensus 478 n~~i~~~ar~~~p---------------------------------------------~~~iiaRa--~d~~~~~~L~~~ 510 (621)
T PRK03562 478 SLQLVELVKEHFP---------------------------------------------HLQIIARA--RDVDHYIRLRQA 510 (621)
T ss_pred HHHHHHHHHHhCC---------------------------------------------CCeEEEEE--CCHHHHHHHHHC
Confidence 3556667777666 67776655 445667778889
Q ss_pred CCCeEE
Q 023816 179 GAEDFI 184 (276)
Q Consensus 179 Ga~d~l 184 (276)
|++..+
T Consensus 511 Gad~v~ 516 (621)
T PRK03562 511 GVEKPE 516 (621)
T ss_pred CCCEEe
Confidence 998663
No 151
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=67.19 E-value=57 Score=25.32 Aligned_cols=29 Identities=21% Similarity=0.137 Sum_probs=26.1
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEE
Q 023816 31 HVLAVDDSFVDRKVIERLLTISSCKVTAV 59 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g~~v~~a 59 (276)
+||||.........+++.+++.|++....
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~h 29 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHH 29 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEE
Confidence 48999998888899999999999998888
No 152
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=67.03 E-value=6.6 Score=34.72 Aligned_cols=49 Identities=10% Similarity=0.144 Sum_probs=36.6
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEe
Q 023816 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91 (276)
Q Consensus 32 VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D 91 (276)
||+||.....-..|.++|++.|+++....+.+..++.+ ....||.||+.
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~-----------~~~~~d~iIls 50 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDI-----------ENMKPDFLMIS 50 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHH-----------hhCCCCEEEEC
Confidence 89999888888889999999999988876654333333 33468887764
No 153
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=66.62 E-value=94 Score=28.18 Aligned_cols=88 Identities=14% Similarity=0.154 Sum_probs=53.6
Q ss_pred HhhCCC-EEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhhhhh
Q 023816 49 LTISSC-KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQN 127 (276)
Q Consensus 49 L~~~g~-~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~ 127 (276)
|...+. -|....+.+++++.+..- .+..+.+|=+.+. .-+.++.++++++..|
T Consensus 5 l~~~~liaVlr~~~~e~a~~~~~al--------~~~Gi~~iEit~~--t~~a~~~i~~l~~~~~---------------- 58 (204)
T TIGR01182 5 LREAKIVPVIRIDDVDDALPLAKAL--------IEGGLRVLEVTLR--TPVALDAIRLLRKEVP---------------- 58 (204)
T ss_pred HhhCCEEEEEecCCHHHHHHHHHHH--------HHcCCCEEEEeCC--CccHHHHHHHHHHHCC----------------
Confidence 333442 344466666666665321 2334555544443 4568889999997665
Q ss_pred hhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHH
Q 023816 128 LFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV 193 (276)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L 193 (276)
++.|=+=|- -+.+..+++.++|| +|++-|..-.++
T Consensus 59 -----------------------------~~~vGAGTV-l~~~~a~~a~~aGA-~FivsP~~~~~v 93 (204)
T TIGR01182 59 -----------------------------DALIGAGTV-LNPEQLRQAVDAGA-QFIVSPGLTPEL 93 (204)
T ss_pred -----------------------------CCEEEEEeC-CCHHHHHHHHHcCC-CEEECCCCCHHH
Confidence 444433333 45678889999999 577778766665
No 154
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=66.19 E-value=42 Score=30.94 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=32.4
Q ss_pred ccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 152 ~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
+.....+|||+- ... ...+.++.|..+++..|-+.+++.+.+..+..
T Consensus 291 EAma~G~Pvv~s-~~~---g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 291 EAMASGLPVIAT-AVG---GNPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred HHHHcCCCEEEc-CCC---CcHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 344457888763 222 24456677888999999999999777766654
No 155
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=65.45 E-value=37 Score=30.00 Aligned_cols=29 Identities=31% Similarity=0.349 Sum_probs=25.1
Q ss_pred CCeEEEEecCCCHHHHHHHHhcC-CCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDG-AEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~G-a~d~l~ 185 (276)
++|+++-.+-.+.+++.++++.| |+..+.
T Consensus 190 ~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 190 PIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 48888888888999999999988 998875
No 156
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=65.26 E-value=1.4e+02 Score=29.05 Aligned_cols=30 Identities=13% Similarity=0.225 Sum_probs=25.7
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
.+|||+--+-....++.+|+..||+....=
T Consensus 201 ~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 201 RKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred CCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 489998888889999999999999876553
No 157
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=65.22 E-value=29 Score=32.92 Aligned_cols=45 Identities=18% Similarity=0.312 Sum_probs=34.5
Q ss_pred CCeEEEEecCCC------HHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENI------LARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 201 (276)
Q Consensus 157 ~ipiV~ls~~~~------~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~ 201 (276)
.+|+++|+=++. ....++|.+.|++++|.--+..++-..+.....
T Consensus 94 ~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~ 144 (265)
T COG0159 94 KVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAE 144 (265)
T ss_pred CCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHH
Confidence 899999997764 345668999999999999777777655555444
No 158
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=65.17 E-value=71 Score=30.72 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=38.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEE--E---CCHHHHHHHhcccccccccCCCCCceeEEEE
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTA--V---DSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~--a---~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~ 90 (276)
+-+||=+|-++..++..-+.-+++|..+.. + .-.+...+.+ +..+||++++
T Consensus 104 PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll-----------~~~~PDIlVi 159 (283)
T TIGR02855 104 PGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLI-----------EEVRPDILVI 159 (283)
T ss_pred CCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHH-----------HHhCCCEEEE
Confidence 679999999999888888888888877665 2 2333445555 6789998874
No 159
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=65.14 E-value=1.8e+02 Score=30.78 Aligned_cols=41 Identities=7% Similarity=0.139 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHH-HHHHHHH
Q 023816 156 REIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV-KRIKDYL 200 (276)
Q Consensus 156 ~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L-~~~~~~l 200 (276)
..+++|+++. .....+.+.|....+......+.+ ..+++.+
T Consensus 225 ~~~~ivaIgp----rtA~~a~~~G~~~i~~a~~~~e~ll~ai~~~~ 266 (656)
T PRK06975 225 KHAPLVAPHA----RIAEQARALGFDRITLTGAGDERIVRAFLTWA 266 (656)
T ss_pred hCCeEEEeCH----HHHHHHHHcCCCeeecCCCChHHHHHHHHHHh
Confidence 3577777653 345566788887765444444444 4444433
No 160
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=64.84 E-value=99 Score=29.39 Aligned_cols=48 Identities=13% Similarity=0.231 Sum_probs=32.4
Q ss_pred ccCCCCCeEEEEecCCCHHHHHHHHhcCCCeE-EeCCCCHHHHHHHHHHHHHh
Q 023816 152 SSALREIPVVIMSSENILARIDRCLEDGAEDF-IVKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 152 ~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~-l~KPv~~~~L~~~~~~l~~~ 203 (276)
+.....+|||+--... ..+.++.|.++| +..|.+.+++.+.+..+..+
T Consensus 296 EAma~G~PVI~s~~gg----~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d 344 (380)
T PRK15484 296 EAMAAGKPVLASTKGG----ITEFVLEGITGYHLAEPMTSDSIISDINRTLAD 344 (380)
T ss_pred HHHHcCCCEEEeCCCC----cHhhcccCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 4445578987644322 345566788898 56788999997777666544
No 161
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=64.12 E-value=8.3 Score=33.52 Aligned_cols=49 Identities=10% Similarity=0.055 Sum_probs=36.3
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEe
Q 023816 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91 (276)
Q Consensus 32 VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D 91 (276)
||+||.....-.-|.++|+..|+++..+.+..--++.+ ++..||.|++.
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~-----------~~~~~~~iils 50 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDI-----------EQLAPSHLVIS 50 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHH-----------HhcCCCeEEEc
Confidence 89999888888899999999999998877653223333 34467877754
No 162
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=63.93 E-value=47 Score=31.20 Aligned_cols=64 Identities=22% Similarity=0.247 Sum_probs=48.3
Q ss_pred eCCHHHHHHHHHHHhhCC-CEEEE------ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCC-CCCHHHHHHHHH
Q 023816 36 DDSFVDRKVIERLLTISS-CKVTA------VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-GMTGYELLKKIK 107 (276)
Q Consensus 36 dD~~~~~~~L~~~L~~~g-~~v~~------a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp-~~~G~ell~~Ir 107 (276)
+|..++.+.++++++..+ ..|+. +.+..+|++.+ ....++=||+.=.-+ -.+|++.++++.
T Consensus 97 ~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l-----------~~lG~~rILTSGg~~~a~~g~~~L~~lv 165 (248)
T PRK11572 97 VDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQL-----------ADLGVARILTSGQQQDAEQGLSLIMELI 165 (248)
T ss_pred CCCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHH-----------HHcCCCEEECCCCCCCHHHHHHHHHHHH
Confidence 477888999999988654 56654 45788899988 566899999876655 367888888887
Q ss_pred hhC
Q 023816 108 VTT 110 (276)
Q Consensus 108 ~~~ 110 (276)
++.
T Consensus 166 ~~a 168 (248)
T PRK11572 166 AAS 168 (248)
T ss_pred Hhc
Confidence 643
No 163
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=62.64 E-value=28 Score=31.35 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=39.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~--~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
.-+++.||-|....+.|++-++.+++ ++. ...+...+++.++ ....||+|++|-
T Consensus 66 A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~----------~~~~FDlVflDP 122 (187)
T COG0742 66 AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG----------TREPFDLVFLDP 122 (187)
T ss_pred CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC----------CCCcccEEEeCC
Confidence 34799999999999999999988873 232 2444457777773 222599999994
No 164
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=62.46 E-value=76 Score=30.52 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=24.0
Q ss_pred CCeEE--EEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVV--IMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV--~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
.+||| +..+-..++.+.++++.||+.+.+=
T Consensus 194 ~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVG 225 (283)
T cd04727 194 RLPVVNFAAGGVATPADAALMMQLGADGVFVG 225 (283)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 48987 5555558999999999999998653
No 165
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=62.12 E-value=78 Score=30.85 Aligned_cols=94 Identities=11% Similarity=0.192 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCC----HHHHHHHHHhhCCCC
Q 023816 38 SFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT----GYELLKKIKVTTPFN 113 (276)
Q Consensus 38 ~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~----G~ell~~Ir~~~p~~ 113 (276)
|...-+.|...|...||..+- ....+|+|++..+-.... .++.++++|+..|
T Consensus 9 N~~ds~~~~~~l~~~g~~~~~----------------------~~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p-- 64 (414)
T TIGR01579 9 NQYESESLKNQLIQKGYEVVP----------------------DEDKADVYIINTCTVTAKADSKARRAIRRARRQNP-- 64 (414)
T ss_pred CHHHHHHHHHHHHHCcCEECC----------------------CcccCCEEEEeccccchHHHHHHHHHHHHHHhhCC--
Confidence 455667777777777776441 123589999998766543 6778888887655
Q ss_pred cccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHH
Q 023816 114 FLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV 193 (276)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L 193 (276)
+++ |++++-.-.....++++....|++.-+-....+
T Consensus 65 -------------------------------------------~~~-vvvgGc~a~~~~ee~~~~~~vD~vv~~e~~~~~ 100 (414)
T TIGR01579 65 -------------------------------------------TAK-IIVTGCYAQSNPKELADLKDVDLVLGNKEKDKI 100 (414)
T ss_pred -------------------------------------------CcE-EEEECCccccCHHHHhcCCCCcEEECCCCHHHH
Confidence 445 445554444445556666667889888776666
Q ss_pred HHHHHH
Q 023816 194 KRIKDY 199 (276)
Q Consensus 194 ~~~~~~ 199 (276)
.+++..
T Consensus 101 ~~ll~~ 106 (414)
T TIGR01579 101 NKLLSL 106 (414)
T ss_pred HHHHHH
Confidence 555543
No 166
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=61.98 E-value=1.5e+02 Score=30.44 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=26.1
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+|||+-.+-...+++.+|+.+||+....
T Consensus 351 ~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 351 GVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 58999999999999999999999987765
No 167
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=61.61 E-value=89 Score=29.76 Aligned_cols=83 Identities=22% Similarity=0.225 Sum_probs=53.9
Q ss_pred HHHHHhhCCCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEe-cCC----C-CC-CHHHHHHHHHhhCCCCccc
Q 023816 45 IERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITD-YCM----P-GM-TGYELLKKIKVTTPFNFLY 116 (276)
Q Consensus 45 L~~~L~~~g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D-~~m----p-~~-~G~ell~~Ir~~~p~~~~~ 116 (276)
+.+.++..|..|.. +.+.++|.+.+ +..+|.|++- ..- . .. +-+.++..++...
T Consensus 128 ~i~~l~~~gi~v~~~v~s~~~A~~a~------------~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~------ 189 (330)
T PF03060_consen 128 VIERLHAAGIKVIPQVTSVREARKAA------------KAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAV------ 189 (330)
T ss_dssp HHHHHHHTT-EEEEEESSHHHHHHHH------------HTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-------
T ss_pred HHHHHHHcCCccccccCCHHHHHHhh------------hcCCCEEEEeccccCCCCCccccceeeHHHHHhhhc------
Confidence 34557888987765 99999998766 3358887754 221 1 22 3567777887643
Q ss_pred chheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 117 STIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++|||+--+=.+...+..++..||+....
T Consensus 190 ----------------------------------------~iPViaAGGI~dg~~iaaal~lGA~gV~~ 218 (330)
T PF03060_consen 190 ----------------------------------------DIPVIAAGGIADGRGIAAALALGADGVQM 218 (330)
T ss_dssp ----------------------------------------SS-EEEESS--SHHHHHHHHHCT-SEEEE
T ss_pred ----------------------------------------CCcEEEecCcCCHHHHHHHHHcCCCEeec
Confidence 38998887777888899999999999874
No 168
>PRK14974 cell division protein FtsY; Provisional
Probab=61.48 E-value=1.3e+02 Score=29.16 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=15.1
Q ss_pred CCceeEEEEecCCCCCC--HHHHHHHHHh
Q 023816 82 GLKVDLIITDYCMPGMT--GYELLKKIKV 108 (276)
Q Consensus 82 ~~~~DlIL~D~~mp~~~--G~ell~~Ir~ 108 (276)
...+|+||+|.- +.. -.+++.+|+.
T Consensus 220 ~~~~DvVLIDTa--Gr~~~~~~lm~eL~~ 246 (336)
T PRK14974 220 ARGIDVVLIDTA--GRMHTDANLMDELKK 246 (336)
T ss_pred hCCCCEEEEECC--CccCCcHHHHHHHHH
Confidence 446899999973 332 3445555543
No 169
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.44 E-value=62 Score=30.87 Aligned_cols=66 Identities=20% Similarity=0.204 Sum_probs=45.5
Q ss_pred EEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhh
Q 023816 55 KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFIL 133 (276)
Q Consensus 55 ~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~ 133 (276)
++.. ++|.+++.+.+ ..++|+|++| .|+--++-+.+....
T Consensus 195 kIeVEv~slee~~ea~------------~~gaDiImLD----n~s~e~l~~av~~~~----------------------- 235 (281)
T PRK06543 195 HVEVEVDRLDQIEPVL------------AAGVDTIMLD----NFSLDDLREGVELVD----------------------- 235 (281)
T ss_pred cEEEEeCCHHHHHHHH------------hcCCCEEEEC----CCCHHHHHHHHHHhC-----------------------
Confidence 4544 99999999887 3478999999 344444444443211
Q ss_pred hccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCe
Q 023816 134 SICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAED 182 (276)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d 182 (276)
....+-.|+.-..+.+.+..+.|+|-
T Consensus 236 -----------------------~~~~leaSGgI~~~ni~~yA~tGVD~ 261 (281)
T PRK06543 236 -----------------------GRAIVEASGNVNLNTVGAIASTGVDV 261 (281)
T ss_pred -----------------------CCeEEEEECCCCHHHHHHHHhcCCCE
Confidence 22367888888888888888889853
No 170
>PRK04148 hypothetical protein; Provisional
Probab=61.07 E-value=7 Score=33.32 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=47.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
+.+||.|.=- ....+...|.+.|++|++++.-.++++.+ .....+.+..|+--|.+.-++..+.|-.
T Consensus 17 ~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a-----------~~~~~~~v~dDlf~p~~~~y~~a~liys 83 (134)
T PRK04148 17 NKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKA-----------KKLGLNAFVDDLFNPNLEIYKNAKLIYS 83 (134)
T ss_pred CCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHH-----------HHhCCeEEECcCCCCCHHHHhcCCEEEE
Confidence 3577777655 22334556778899999999888888887 4456789999998887766555544443
No 171
>PLN02366 spermidine synthase
Probab=60.70 E-value=59 Score=31.08 Aligned_cols=68 Identities=13% Similarity=0.064 Sum_probs=43.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhC-----CCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCC-----
Q 023816 30 VHVLAVDDSFVDRKVIERLLTIS-----SCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT----- 98 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~-----g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~----- 98 (276)
-+|-+||=++...+..++.+... +-++.. ..++.+.++.. ....||+||+|..-|..-
T Consensus 116 ~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~-----------~~~~yDvIi~D~~dp~~~~~~L~ 184 (308)
T PLN02366 116 EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA-----------PEGTYDAIIVDSSDPVGPAQELF 184 (308)
T ss_pred CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc-----------cCCCCCEEEEcCCCCCCchhhhh
Confidence 47889998888888888877542 223443 56666666543 245799999998655322
Q ss_pred HHHHHHHHHh
Q 023816 99 GYELLKKIKV 108 (276)
Q Consensus 99 G~ell~~Ir~ 108 (276)
..++.+.+++
T Consensus 185 t~ef~~~~~~ 194 (308)
T PLN02366 185 EKPFFESVAR 194 (308)
T ss_pred HHHHHHHHHH
Confidence 2355666654
No 172
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=60.32 E-value=1.2e+02 Score=30.85 Aligned_cols=52 Identities=13% Similarity=0.041 Sum_probs=28.6
Q ss_pred cEEEEEeCCHH---HHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 30 VHVLAVDDSFV---DRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 30 ~~VLIVdD~~~---~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
.+|++++-|.. ....++.+....|+.+..+.+..++.+.+ +...+|+||+|.
T Consensus 253 ~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l-----------~~~~~D~VLIDT 307 (432)
T PRK12724 253 KSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETL-----------ARDGSELILIDT 307 (432)
T ss_pred CeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHH-----------HhCCCCEEEEeC
Confidence 35666665441 12234444445565555444444445444 345789999997
No 173
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=60.26 E-value=91 Score=29.50 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=21.6
Q ss_pred eEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 159 PVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 159 piV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
..|..++.-..+.+.+..+.|+|-+.+
T Consensus 230 ~~ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 230 VLLEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred eEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 457788888899999999999976543
No 174
>PRK04302 triosephosphate isomerase; Provisional
Probab=59.72 E-value=1.3e+02 Score=26.85 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=26.1
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
++||+.-.+-...+...++++.|+++++.=
T Consensus 173 ~~pvi~GggI~~~e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 173 DVKVLCGAGISTGEDVKAALELGADGVLLA 202 (223)
T ss_pred CCEEEEECCCCCHHHHHHHHcCCCCEEEEe
Confidence 689988888788899999999999999864
No 175
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=59.62 E-value=39 Score=28.99 Aligned_cols=92 Identities=16% Similarity=0.226 Sum_probs=57.3
Q ss_pred HHHHHHhhCCCEEEE--ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC-----CCHHHHHHHHHhhCCCCccc
Q 023816 44 VIERLLTISSCKVTA--VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-----MTGYELLKKIKVTTPFNFLY 116 (276)
Q Consensus 44 ~L~~~L~~~g~~v~~--a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~-----~~G~ell~~Ir~~~p~~~~~ 116 (276)
..-+.|+..||.+.. +..+...+..+ ....||.|-+|..+-. .....+++.+.....
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l-----------~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~----- 200 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYL-----------KRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQ----- 200 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHH-----------HhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHH-----
Confidence 344566788988776 55566666666 5567999999875421 113344555543211
Q ss_pred chheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCC----eEEeCCCCH
Q 023816 117 STIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAE----DFIVKPVKL 190 (276)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~----d~l~KPv~~ 190 (276)
...+. |++++=.+.+....+.+.|++ .|+-||...
T Consensus 201 --------------------------------------~~~~~-via~gVe~~~~~~~l~~~Gi~~~QG~~~~~p~~~ 239 (241)
T smart00052 201 --------------------------------------KLGLQ-VVAEGVETPEQLDLLRSLGCDYGQGYLFSRPLPL 239 (241)
T ss_pred --------------------------------------HCCCe-EEEecCCCHHHHHHHHHcCCCEEeeceeccCCCC
Confidence 01333 556777788888899999984 467778654
No 176
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=59.51 E-value=39 Score=31.04 Aligned_cols=54 Identities=11% Similarity=0.091 Sum_probs=40.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCC--EEEEEC--CHHHHHHHhcccccccccCCCCCceeEEEEecC
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVTAVD--SGRRALQFLGLDEEQSINGFDGLKVDLIITDYC 93 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~--~v~~a~--~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~ 93 (276)
.-++.-+|-|+...+..++.+++.|+ ++.... ++.+.+... ....||+|++|..
T Consensus 84 ~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~-----------~~~~fDliFIDad 141 (219)
T COG4122 84 DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL-----------LDGSFDLVFIDAD 141 (219)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc-----------cCCCccEEEEeCC
Confidence 34899999999999999999999986 344433 555555542 3568999999974
No 177
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=59.37 E-value=1.4e+02 Score=27.60 Aligned_cols=60 Identities=22% Similarity=0.171 Sum_probs=44.2
Q ss_pred CCCceeEEEEecCCCCC--CHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCC
Q 023816 81 DGLKVDLIITDYCMPGM--TGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREI 158 (276)
Q Consensus 81 ~~~~~DlIL~D~~mp~~--~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (276)
+....|.|.+|...++. -.++.++++++..+ .+
T Consensus 158 ~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~---------------------------------------------~i 192 (231)
T TIGR00736 158 VDDGFDGIHVDAMYPGKPYADMDLLKILSEEFN---------------------------------------------DK 192 (231)
T ss_pred HHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcC---------------------------------------------CC
Confidence 44567877778666653 24788888886432 48
Q ss_pred eEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 159 PVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 159 piV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
|||.--+=...++..++++.||+....
T Consensus 193 pIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 193 IIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred cEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 888877777889999999999987643
No 178
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=59.03 E-value=1.6e+02 Score=28.46 Aligned_cols=47 Identities=15% Similarity=0.168 Sum_probs=33.8
Q ss_pred ccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 152 ~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
+.....+|||.--.. ...+.++.|..+|+..|-+.+++.+.+..+..
T Consensus 323 EAma~G~PVI~t~~~----g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 323 EAMAVGIPVVSTLHS----GIPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred HHHhCCCCEEEeCCC----CchhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 344557888764322 24567788999999999999999777776654
No 179
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=58.80 E-value=1.2e+02 Score=27.61 Aligned_cols=55 Identities=13% Similarity=0.013 Sum_probs=37.0
Q ss_pred HHHHHHHHhhCCCEEEE-------ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 42 RKVIERLLTISSCKVTA-------VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 42 ~~~L~~~L~~~g~~v~~-------a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
.+.+++.+++.|.+++. ..+....++.+ ...++|+|++-.. ..++..+++.+++.
T Consensus 154 ~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l-----------~~~~pd~v~~~~~--~~~~~~~~~~~~~~ 215 (312)
T cd06346 154 ADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAA-----------AAGGPDALVVIGY--PETGSGILRSAYEQ 215 (312)
T ss_pred HHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHH-----------HhcCCCEEEEecc--cchHHHHHHHHHHc
Confidence 34566777788887764 23556677777 5667898886543 34777888888763
No 180
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=58.72 E-value=92 Score=32.04 Aligned_cols=99 Identities=14% Similarity=0.121 Sum_probs=64.9
Q ss_pred HHHHHhhCCCEEEE--ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC-----CCHHHHHHHHHhhCCCCcccc
Q 023816 45 IERLLTISSCKVTA--VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-----MTGYELLKKIKVTTPFNFLYS 117 (276)
Q Consensus 45 L~~~L~~~g~~v~~--a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~-----~~G~ell~~Ir~~~p~~~~~~ 117 (276)
....|+..||++.. +.+|-..+..+ ....+|.|=+|-.+-. .....+++.|.....
T Consensus 683 ~l~~l~~~G~~i~ld~fg~~~~~~~~l-----------~~l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~------ 745 (799)
T PRK11359 683 RIQILRDMGVGLSVDDFGTGFSGLSRL-----------VSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQ------ 745 (799)
T ss_pred HHHHHHHCCCEEEEECCCCchhhHHHH-----------hhCCCCEEEECHHHHhhcccChhHHHHHHHHHHHHH------
Confidence 44467788998877 66777777777 5667899888874311 122334444432111
Q ss_pred hheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCC----eEEeCCCCHHHH
Q 023816 118 TIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAE----DFIVKPVKLSDV 193 (276)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~----d~l~KPv~~~~L 193 (276)
..++. |++.+=...+....+.+.|++ .|+.||...++|
T Consensus 746 -------------------------------------~~~i~-via~gVe~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~ 787 (799)
T PRK11359 746 -------------------------------------SLNLT-VVAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEI 787 (799)
T ss_pred -------------------------------------HCCCe-EEEEcCCCHHHHHHHHhcCCCEEeeCeecCCCCHHHH
Confidence 01344 456677788888889999995 568899999998
Q ss_pred HHHHH
Q 023816 194 KRIKD 198 (276)
Q Consensus 194 ~~~~~ 198 (276)
...+.
T Consensus 788 ~~~~~ 792 (799)
T PRK11359 788 PGWMS 792 (799)
T ss_pred HHHHH
Confidence 66443
No 181
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=58.14 E-value=1.1e+02 Score=29.63 Aligned_cols=66 Identities=9% Similarity=0.084 Sum_probs=44.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC-EEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHH--HHHHH
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSC-KVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGY--ELLKK 105 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~-~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~--ell~~ 105 (276)
-+|+.||=++...+..++-++..|+ ++. ...+..+.+... ...||+|++| |-..|+ ++++.
T Consensus 256 ~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~------------~~~~D~vi~D---PPr~G~~~~~l~~ 320 (374)
T TIGR02085 256 TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQ------------MSAPELVLVN---PPRRGIGKELCDY 320 (374)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhc------------CCCCCEEEEC---CCCCCCcHHHHHH
Confidence 5799999999999999988888776 333 255555444322 1249999999 334453 56677
Q ss_pred HHhhC
Q 023816 106 IKVTT 110 (276)
Q Consensus 106 Ir~~~ 110 (276)
|....
T Consensus 321 l~~~~ 325 (374)
T TIGR02085 321 LSQMA 325 (374)
T ss_pred HHhcC
Confidence 76533
No 182
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=58.13 E-value=1.4e+02 Score=27.62 Aligned_cols=107 Identities=22% Similarity=0.144 Sum_probs=74.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEE----EECCHHHHHHHhcccccccccCCCCCceeEEE----EecCCCCCCH-H
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVT----AVDSGRRALQFLGLDEEQSINGFDGLKVDLII----TDYCMPGMTG-Y 100 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~----~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL----~D~~mp~~~G-~ 100 (276)
+.|+.+-|.....+.++.. +..|.++. .+.+..++.+.+ ++..+|.++ .|.++-+.+- .
T Consensus 84 ~tV~g~A~~~TI~~~i~~A-~~~~~~v~iDl~~~~~~~~~~~~l-----------~~~gvd~~~~H~g~D~q~~G~~~~~ 151 (217)
T COG0269 84 VTVLGAADDATIKKAIKVA-KEYGKEVQIDLIGVWDPEQRAKWL-----------KELGVDQVILHRGRDAQAAGKSWGE 151 (217)
T ss_pred EEEEecCCHHHHHHHHHHH-HHcCCeEEEEeecCCCHHHHHHHH-----------HHhCCCEEEEEecccHhhcCCCccH
Confidence 4677776666665555544 44554443 366778888888 556889888 5778877775 7
Q ss_pred HHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCC
Q 023816 101 ELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGA 180 (276)
Q Consensus 101 ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga 180 (276)
+.+.++++... ..--|.+++.-.++.+..+...|+
T Consensus 152 ~~l~~ik~~~~---------------------------------------------~g~~vAVaGGI~~~~i~~~~~~~~ 186 (217)
T COG0269 152 DDLEKIKKLSD---------------------------------------------LGAKVAVAGGITPEDIPLFKGIGA 186 (217)
T ss_pred HHHHHHHHhhc---------------------------------------------cCceEEEecCCCHHHHHHHhcCCC
Confidence 88888887443 235788999999999999999997
Q ss_pred CeEE-----eCCCCHHHH
Q 023816 181 EDFI-----VKPVKLSDV 193 (276)
Q Consensus 181 ~d~l-----~KPv~~~~L 193 (276)
+=|| ++--++.+.
T Consensus 187 ~ivIvGraIt~a~dp~~~ 204 (217)
T COG0269 187 DIVIVGRAITGAKDPAEA 204 (217)
T ss_pred CEEEECchhcCCCCHHHH
Confidence 6654 566565554
No 183
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=58.13 E-value=52 Score=29.76 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=26.1
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+|+++--+-...+++.++++.|++..+.
T Consensus 189 ~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 189 DIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 58999888889999999999999998876
No 184
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=57.77 E-value=24 Score=33.14 Aligned_cols=45 Identities=20% Similarity=0.403 Sum_probs=33.4
Q ss_pred CCeEEEEecCC------CHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSEN------ILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 201 (276)
Q Consensus 157 ~ipiV~ls~~~------~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~ 201 (276)
.+|+|+||=.+ ......+|-++|++++|..-+..++-......+.
T Consensus 87 ~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~ 137 (259)
T PF00290_consen 87 DIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAK 137 (259)
T ss_dssp SSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHH
T ss_pred CCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHH
Confidence 89999999755 3446778889999999999887777655554433
No 185
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=57.72 E-value=1.1e+02 Score=29.24 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=19.4
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 160 VVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 160 iV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
.+..++.-..+.+.+..+.|++-.-
T Consensus 245 ~leAsGGIt~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 245 KIEASGNITLETIRAVAETGVDYIS 269 (288)
T ss_pred EEEEECCCCHHHHHHHHHcCCCEEE
Confidence 4667777788888899999997654
No 186
>PRK10742 putative methyltransferase; Provisional
Probab=57.65 E-value=70 Score=30.11 Aligned_cols=68 Identities=15% Similarity=0.140 Sum_probs=46.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhC------CC----EEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTIS------SC----KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM 97 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~------g~----~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~ 97 (276)
+.+|..||-++.....|++-|++. +. ++.. ..+..+.|+.+ . ..||+|.+|-.-|..
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~-----------~-~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-----------T-PRPQVVYLDPMFPHK 177 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC-----------C-CCCcEEEECCCCCCC
Confidence 457999999999999999999874 21 2332 44555555543 2 269999999988875
Q ss_pred C-HHHHHHHHHh
Q 023816 98 T-GYELLKKIKV 108 (276)
Q Consensus 98 ~-G~ell~~Ir~ 108 (276)
. .....+.+|.
T Consensus 178 ~ksa~vkk~mr~ 189 (250)
T PRK10742 178 QKSALVKKEMRV 189 (250)
T ss_pred ccccchhhhHHH
Confidence 4 3335555553
No 187
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=57.59 E-value=1.2e+02 Score=29.52 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=34.6
Q ss_pred CCeEEEEec----CCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 157 EIPVVIMSS----ENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 157 ~ipiV~ls~----~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
++-+|.+.. ....+...+|+++|..=++.||+..++.+++++...+
T Consensus 64 Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 64 DIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAER 113 (343)
T ss_pred CEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 455565522 3456788899999999999999998787777766654
No 188
>PLN02335 anthranilate synthase
Probab=57.47 E-value=17 Score=32.83 Aligned_cols=36 Identities=6% Similarity=0.083 Sum_probs=26.3
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECC
Q 023816 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDS 61 (276)
Q Consensus 26 ~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~ 61 (276)
.+..-+||+||-..-.-..|.+.|+..|+++..+..
T Consensus 15 ~~~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~ 50 (222)
T PLN02335 15 SKQNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRN 50 (222)
T ss_pred cCccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEEC
Confidence 344568999985444556688899999998887654
No 189
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=57.45 E-value=47 Score=31.95 Aligned_cols=44 Identities=23% Similarity=0.267 Sum_probs=30.0
Q ss_pred CCeEE--EEecCCCHHHHHHHHhcCCCeEEe-----CCCCHHHH-HHHHHHH
Q 023816 157 EIPVV--IMSSENILARIDRCLEDGAEDFIV-----KPVKLSDV-KRIKDYL 200 (276)
Q Consensus 157 ~ipiV--~ls~~~~~~~~~~al~~Ga~d~l~-----KPv~~~~L-~~~~~~l 200 (276)
.+||| +..+-..++.+..+++.||+.+.+ |.-++.+. +++++.+
T Consensus 197 ~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai 248 (287)
T TIGR00343 197 KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEAT 248 (287)
T ss_pred CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHH
Confidence 58998 555555899999999999999854 44344554 3344433
No 190
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=57.26 E-value=33 Score=31.11 Aligned_cols=64 Identities=28% Similarity=0.367 Sum_probs=48.7
Q ss_pred eCCHHHHHHHHHHHhhC-CCEEEE------ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCC-CCCHHHHHHHHH
Q 023816 36 DDSFVDRKVIERLLTIS-SCKVTA------VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-GMTGYELLKKIK 107 (276)
Q Consensus 36 dD~~~~~~~L~~~L~~~-g~~v~~------a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp-~~~G~ell~~Ir 107 (276)
+|..++.+.++++++.. |+.++. +.+..+|++.+ .+.+++=||+.=.-+ ..+|++.++++.
T Consensus 96 ~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L-----------~~lG~~rVLTSGg~~~a~~g~~~L~~lv 164 (201)
T PF03932_consen 96 EDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQL-----------IELGFDRVLTSGGAPTALEGIENLKELV 164 (201)
T ss_dssp TTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHH-----------HHHT-SEEEESTTSSSTTTCHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHH-----------HhcCCCEEECCCCCCCHHHHHHHHHHHH
Confidence 67888999999998744 678876 56788899888 556899999987654 468999999997
Q ss_pred hhC
Q 023816 108 VTT 110 (276)
Q Consensus 108 ~~~ 110 (276)
++.
T Consensus 165 ~~a 167 (201)
T PF03932_consen 165 EQA 167 (201)
T ss_dssp HHH
T ss_pred HHc
Confidence 643
No 191
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.69 E-value=90 Score=29.89 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=20.6
Q ss_pred eEEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 159 PVVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 159 piV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
..+..|+.-..+.+.+..+.|+|-+-
T Consensus 247 v~ieaSGGI~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 247 VLLESSGGLTLDTAAAYAETGVDYLA 272 (289)
T ss_pred EEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 46778888888899888899986543
No 192
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=56.47 E-value=36 Score=29.15 Aligned_cols=93 Identities=15% Similarity=0.198 Sum_probs=59.0
Q ss_pred HHHHHHHhhCCCEEEE--ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC-----CCHHHHHHHHHhhCCCCcc
Q 023816 43 KVIERLLTISSCKVTA--VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-----MTGYELLKKIKVTTPFNFL 115 (276)
Q Consensus 43 ~~L~~~L~~~g~~v~~--a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~-----~~G~ell~~Ir~~~p~~~~ 115 (276)
..+-+.|+..||++.. +..+...++.+ ....||.|=+|..+.. .....+++.+.....
T Consensus 135 ~~~~~~l~~~G~~l~ld~~g~~~~~~~~l-----------~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~---- 199 (240)
T cd01948 135 LATLRRLRALGVRIALDDFGTGYSSLSYL-----------KRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAH---- 199 (240)
T ss_pred HHHHHHHHHCCCeEEEeCCCCcHhhHHHH-----------HhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHH----
Confidence 3345556788998887 45666666666 5567999999964421 223445555543221
Q ss_pred cchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCC----CeEEeCCCCH
Q 023816 116 YSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGA----EDFIVKPVKL 190 (276)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga----~d~l~KPv~~ 190 (276)
...+ -|++++=.+.+....+.+.|+ ..|+-||.+.
T Consensus 200 ---------------------------------------~~~~-~via~gVe~~~~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 200 ---------------------------------------SLGL-KVVAEGVETEEQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred ---------------------------------------HCCC-eEEEEecCCHHHHHHHHHcCCCeeeeceeccCCCC
Confidence 0123 455777788888889999998 4567777654
No 193
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=56.37 E-value=94 Score=28.15 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=32.7
Q ss_pred ccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 152 ~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
+.....+|+|+-... ...+.+..|..+|+.+|-+.+++.+.+..+..
T Consensus 289 EAma~g~PvI~s~~~----~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 289 EAMACGVPVVASNAG----GIPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred HHHHcCCCEEEeCCC----CchhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 344457888874332 24566778889999999999998776666543
No 194
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=56.15 E-value=40 Score=31.51 Aligned_cols=50 Identities=16% Similarity=0.296 Sum_probs=38.9
Q ss_pred CCCCCeEEEEecCC------CHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 023816 154 ALREIPVVIMSSEN------ILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 154 ~~~~ipiV~ls~~~------~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~~ 203 (276)
..-.+||++|+-++ ....+..|-++||++||.-.+.+++-.....+...+
T Consensus 92 ~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~ 147 (268)
T KOG4175|consen 92 QGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKH 147 (268)
T ss_pred cCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhc
Confidence 33468999998765 456778899999999999999888876666665543
No 195
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=56.00 E-value=1.3e+02 Score=27.14 Aligned_cols=93 Identities=16% Similarity=0.094 Sum_probs=56.8
Q ss_pred HHHhhCCC-EEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhhh
Q 023816 47 RLLTISSC-KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNL 125 (276)
Q Consensus 47 ~~L~~~g~-~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~ 125 (276)
+.|...+. -|....+.+++++.+..- .+..+. ++.+.|-.-++++.+++|++..+
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al--------~~~Gi~--~iEit~~~~~a~~~i~~l~~~~~-------------- 63 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAV--------IKGGIK--AIEVTYTNPFASEVIKELVELYK-------------- 63 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHH--------HHCCCC--EEEEECCCccHHHHHHHHHHHcC--------------
Confidence 45555553 455577888877776322 122233 34444556678999999987553
Q ss_pred hhhhhhhhhccccCCcCCCCCcccccccCCCCCe-E-EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHH
Q 023816 126 QNLFLFILSICFCFPFFFPSNNLEQDSSALREIP-V-VIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKR 195 (276)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-i-V~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~ 195 (276)
+-| + |-.-.=-+.+..++|+++|| +|++-|.--.++.+
T Consensus 64 -------------------------------~~p~~~vGaGTV~~~~~~~~a~~aGA-~FivsP~~~~~v~~ 103 (213)
T PRK06552 64 -------------------------------DDPEVLIGAGTVLDAVTARLAILAGA-QFIVSPSFNRETAK 103 (213)
T ss_pred -------------------------------CCCCeEEeeeeCCCHHHHHHHHHcCC-CEEECCCCCHHHHH
Confidence 111 2 22222245678899999999 68888877777643
No 196
>PRK04457 spermidine synthase; Provisional
Probab=55.85 E-value=1.7e+02 Score=26.98 Aligned_cols=69 Identities=10% Similarity=0.064 Sum_probs=46.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCC--CEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCC----CC-CCH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISS--CKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM----PG-MTG 99 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g--~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~m----p~-~~G 99 (276)
+..+|.+||=++...+..++.+...+ -++.. ..++.+.++.. ...||+|++|..- |. +..
T Consensus 89 p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~------------~~~yD~I~~D~~~~~~~~~~l~t 156 (262)
T PRK04457 89 PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH------------RHSTDVILVDGFDGEGIIDALCT 156 (262)
T ss_pred CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC------------CCCCCEEEEeCCCCCCCccccCc
Confidence 46789999999999999998876432 23433 56777766543 3479999999622 21 233
Q ss_pred HHHHHHHHh
Q 023816 100 YELLKKIKV 108 (276)
Q Consensus 100 ~ell~~Ir~ 108 (276)
.++++.+++
T Consensus 157 ~efl~~~~~ 165 (262)
T PRK04457 157 QPFFDDCRN 165 (262)
T ss_pred HHHHHHHHH
Confidence 567777765
No 197
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=55.44 E-value=98 Score=30.49 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=31.1
Q ss_pred cCCCCCeEEEEecCCCHHHHHHHHhc------CCCeEEeCCCCHHHHHHHHHHHHHh
Q 023816 153 SALREIPVVIMSSENILARIDRCLED------GAEDFIVKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 153 ~~~~~ipiV~ls~~~~~~~~~~al~~------Ga~d~l~KPv~~~~L~~~~~~l~~~ 203 (276)
.....+|||+ |... ...+.++. |..+++..|-+.+++.+.+..+...
T Consensus 390 Ama~G~PVVa-td~g---~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~ 442 (475)
T cd03813 390 AMAAGIPVVA-TDVG---SCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKD 442 (475)
T ss_pred HHHcCCCEEE-CCCC---ChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcC
Confidence 3344788876 3322 23344444 7789999999999997777766543
No 198
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=55.38 E-value=16 Score=31.93 Aligned_cols=31 Identities=13% Similarity=0.045 Sum_probs=26.7
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCH
Q 023816 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSG 62 (276)
Q Consensus 32 VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g 62 (276)
||+||.....-..+.++|+..|+++....+.
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~ 32 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRND 32 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECC
Confidence 8999988888899999999999998886643
No 199
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=55.25 E-value=1.1e+02 Score=26.81 Aligned_cols=69 Identities=17% Similarity=0.100 Sum_probs=44.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCE--EE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 31 HVLAVDDSFVDRKVIERLLTISSCK--VT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g~~--v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
+|..||.++...+.+++-++..++. +. ...+..++++.+.. ....+|+|++|--.....-.++++.+.
T Consensus 74 ~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~---------~~~~~dvv~~DPPy~~~~~~~~l~~l~ 144 (189)
T TIGR00095 74 VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK---------KPTFDNVIYLDPPFFNGALQALLELCE 144 (189)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc---------cCCCceEEEECcCCCCCcHHHHHHHHH
Confidence 7999999999999999998887763 33 34455555554310 122489999996443322334555554
Q ss_pred h
Q 023816 108 V 108 (276)
Q Consensus 108 ~ 108 (276)
.
T Consensus 145 ~ 145 (189)
T TIGR00095 145 N 145 (189)
T ss_pred H
Confidence 3
No 200
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.20 E-value=57 Score=31.31 Aligned_cols=91 Identities=14% Similarity=0.123 Sum_probs=55.7
Q ss_pred EEEEEeCCHHHHHHHHHHH----hhCC--CEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHH
Q 023816 31 HVLAVDDSFVDRKVIERLL----TISS--CKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELL 103 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L----~~~g--~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell 103 (276)
-|||=|.+......+.+.+ +..+ .+|.. +++.+|+.+.+ ..++|+|++|- |+--++-
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~------------~agaDiImLDn----mspe~l~ 232 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAA------------AAGADIIMLDN----MSLEQIE 232 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHH------------HcCCCEEEECC----CCHHHHH
Confidence 3666665554443344433 3333 34544 89999999887 33689999993 3433333
Q ss_pred HHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeE
Q 023816 104 KKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDF 183 (276)
Q Consensus 104 ~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~ 183 (276)
+.+... + .-.++-.|+.-..+.+.+..+.|+|-.
T Consensus 233 ~av~~~-~---------------------------------------------~~~~leaSGGI~~~ni~~yA~tGVD~I 266 (290)
T PRK06559 233 QAITLI-A---------------------------------------------GRSRIECSGNIDMTTISRFRGLAIDYV 266 (290)
T ss_pred HHHHHh-c---------------------------------------------CceEEEEECCCCHHHHHHHHhcCCCEE
Confidence 333211 1 224677788888888888888888643
No 201
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=55.18 E-value=1.4e+02 Score=26.12 Aligned_cols=47 Identities=15% Similarity=0.284 Sum_probs=32.2
Q ss_pred ccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 152 ~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
+.....+|||.-... ...+-+..|..+++.++-+.+++...+..+..
T Consensus 282 Ea~a~G~Pvi~~~~~----~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 282 EALAAGVPVIASDIG----GMAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred HHHHCCCCEEECCCC----CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 333447888753322 24455677888999999999998777776654
No 202
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=55.04 E-value=73 Score=31.19 Aligned_cols=29 Identities=14% Similarity=0.336 Sum_probs=26.6
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++|||+=.+=...+++..|++.|++..+.
T Consensus 249 ~vpVivdAGIg~~sda~~AmelGadgVL~ 277 (326)
T PRK11840 249 TVPVLVDAGVGTASDAAVAMELGCDGVLM 277 (326)
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 69999988889999999999999999875
No 203
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=55.03 E-value=1.5e+02 Score=27.68 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=34.9
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHhhCCCEEEEECCH----H---HHHHHhcccccccccCCCCCceeEEEEecCCCCCC
Q 023816 29 EVHVLAVDDSFV---DRKVIERLLTISSCKVTAVDSG----R---RALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT 98 (276)
Q Consensus 29 ~~~VLIVdD~~~---~~~~L~~~L~~~g~~v~~a~~g----~---~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~ 98 (276)
+.+|++|+-|.. ..+.++.+.++.|..+.....+ . ++++.+ ....+|+||+|. |+..
T Consensus 100 g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~-----------~~~~~D~ViIDT--~G~~ 166 (272)
T TIGR00064 100 GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA-----------KARNIDVVLIDT--AGRL 166 (272)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH-----------HHCCCCEEEEeC--CCCC
Confidence 357777775532 2345555566667655543221 1 222222 245699999997 3332
Q ss_pred --HHHHHHHHHh
Q 023816 99 --GYELLKKIKV 108 (276)
Q Consensus 99 --G~ell~~Ir~ 108 (276)
-.+++.+|+.
T Consensus 167 ~~d~~~~~el~~ 178 (272)
T TIGR00064 167 QNKVNLMDELKK 178 (272)
T ss_pred cchHHHHHHHHH
Confidence 3344444443
No 204
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=55.00 E-value=1.1e+02 Score=28.20 Aligned_cols=66 Identities=20% Similarity=0.143 Sum_probs=40.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCC-------CEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCC----
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISS-------CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT---- 98 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g-------~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~---- 98 (276)
-+|.+||-++...+..++.+...+ +++. ..++.+.++.. ...||+|++|..-|...
T Consensus 97 ~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~-~~D~~~~l~~~------------~~~yDvIi~D~~~~~~~~~~l 163 (270)
T TIGR00417 97 EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQ-IDDGFKFLADT------------ENTFDVIIVDSTDPVGPAETL 163 (270)
T ss_pred ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEE-ECchHHHHHhC------------CCCccEEEEeCCCCCCcccch
Confidence 468888888888888888775431 2222 45666555433 34799999998644322
Q ss_pred -HHHHHHHHHh
Q 023816 99 -GYELLKKIKV 108 (276)
Q Consensus 99 -G~ell~~Ir~ 108 (276)
..++++.+++
T Consensus 164 ~~~ef~~~~~~ 174 (270)
T TIGR00417 164 FTKEFYELLKK 174 (270)
T ss_pred hHHHHHHHHHH
Confidence 2355555544
No 205
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=54.48 E-value=5.5 Score=38.81 Aligned_cols=102 Identities=17% Similarity=0.143 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHhhCCCCcccchheeh--hhhhhhhhhhh--hccccCCc-CCCCCcccccccCCCCCeEEEEecCCCHHH
Q 023816 97 MTGYELLKKIKVTTPFNFLYSTIIVF--LNLQNLFLFIL--SICFCFPF-FFPSNNLEQDSSALREIPVVIMSSENILAR 171 (276)
Q Consensus 97 ~~G~ell~~Ir~~~p~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~ 171 (276)
.+..+.++.|+... ||||.||..- ...+|-.++++ -||||-|+ ++.+|++.-...+.+.-|-+++-+.+-+..
T Consensus 176 iTT~dav~~v~~~~--~nlaATIT~hHL~~nrnd~l~Ggi~Ph~fClPilKr~~hr~AL~~aa~sg~~kfFlGtDSAPH~ 253 (344)
T COG0418 176 ITTKDAVEYVKDAN--NNLAATITPHHLLLNRNDMLVGGIRPHLFCLPILKRETHREALREAATSGHPKFFLGTDSAPHA 253 (344)
T ss_pred eccHHHHHHHHhcC--cceeeEeehhheeeehhhhhcCCCCcceeeeccccchhhHHHHHHHHhcCCCcEEecCCCCCCc
Confidence 34555566666532 4699888543 33456666666 69999887 688999999999999999888855543332
Q ss_pred -HHHHHhcCCCeEEeCCCCHHHHHHHHHHH
Q 023816 172 -IDRCLEDGAEDFIVKPVKLSDVKRIKDYL 200 (276)
Q Consensus 172 -~~~al~~Ga~d~l~KPv~~~~L~~~~~~l 200 (276)
-...-..||-+...-|..++-+..+-++.
T Consensus 254 ~~~Ke~~cgcAG~fsap~al~~~AevFE~~ 283 (344)
T COG0418 254 RSRKESACGCAGIFSAPFALPLYAEVFEEE 283 (344)
T ss_pred ccccccccccccccccHhHHHHHHHHHHHh
Confidence 22223348999999998887775555443
No 206
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=54.13 E-value=79 Score=30.56 Aligned_cols=65 Identities=20% Similarity=0.165 Sum_probs=44.2
Q ss_pred cEEEEEeCCHHH-----HHHHHHHHhhCCCEEEEEC---------CHHHHHHHhcccccccccCCCCCceeEEEEecCCC
Q 023816 30 VHVLAVDDSFVD-----RKVIERLLTISSCKVTAVD---------SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (276)
Q Consensus 30 ~~VLIVdD~~~~-----~~~L~~~L~~~g~~v~~a~---------~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp 95 (276)
-|+|||-|.... .+.+++.|+..|+++..++ +.+++++.+ ++.++|+|| -+.
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~-----------~~~~~D~II---aiG 94 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELC-----------KEEKVDFIL---AVG 94 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHH-----------HHcCCCEEE---EeC
Confidence 489999776443 3568888988888876654 234555555 566889987 245
Q ss_pred CCCHHHHHHHHHh
Q 023816 96 GMTGYELLKKIKV 108 (276)
Q Consensus 96 ~~~G~ell~~Ir~ 108 (276)
|.+-+++.|-+.-
T Consensus 95 GGS~iD~aK~ia~ 107 (382)
T cd08187 95 GGSVIDSAKAIAA 107 (382)
T ss_pred ChHHHHHHHHHHh
Confidence 6677777777653
No 207
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=54.02 E-value=15 Score=32.10 Aligned_cols=50 Identities=16% Similarity=0.084 Sum_probs=36.0
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 32 VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
||+||.....-.-|.++|+..|+++..+.+.+..++.+ ....||.||+.=
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~-----------~~~~~d~iils~ 51 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADI-----------DALKPQKIVISP 51 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHH-----------HhcCCCEEEEcC
Confidence 89999887778889999999999888876643223333 334688777653
No 208
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=53.49 E-value=1.2e+02 Score=27.34 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=32.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEE-------ECCHHHHHHHhcc
Q 023816 31 HVLAVDDSFVDRKVIERLLTISSCKVTA-------VDSGRRALQFLGL 71 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g~~v~~-------a~~g~~al~~l~~ 71 (276)
-|.+.+-+..+.+.+-+.|+..|-.+.. ..+.+.|++++..
T Consensus 26 ~vflL~~~i~~ik~ivk~lK~~gK~vfiHvDLv~Gl~~~e~~i~fi~~ 73 (181)
T COG1954 26 YVFLLTGHILNIKEIVKKLKNRGKTVFIHVDLVEGLSNDEVAIEFIKE 73 (181)
T ss_pred EEEEEechhhhHHHHHHHHHhCCcEEEEEeHHhcccCCchHHHHHHHH
Confidence 3667789999999999999988865443 5688899999853
No 209
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=53.49 E-value=77 Score=30.03 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=58.2
Q ss_pred CCCceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeE
Q 023816 81 DGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPV 160 (276)
Q Consensus 81 ~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipi 160 (276)
....||.+++|.+=-..|.-.++..|+...++ +.+.
T Consensus 35 A~aGfDwl~iD~EHapnd~~sl~~qL~a~~~~--------------------------------------------~~~p 70 (255)
T COG3836 35 ATAGFDWLLIDGEHAPNDLQSLLHQLQAVAAY--------------------------------------------ASPP 70 (255)
T ss_pred HhcCCCEEEecccccCccHHHHHHHHHHhhcc--------------------------------------------CCCC
Confidence 45679999999988888999999999976663 3333
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 023816 161 VIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 161 V~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~~ 203 (276)
|+=........+.++++.||..+|..=|+..+=.+..-...|.
T Consensus 71 vVR~p~g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rY 113 (255)
T COG3836 71 VVRPPVGDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRY 113 (255)
T ss_pred eeeCCCCCHHHHHHHHccccceeeeeccCCHHHHHHHHHhccC
Confidence 4444456778999999999999999888766543433334433
No 210
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=53.38 E-value=1.5e+02 Score=26.97 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=26.0
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+||++--+-...+++.++++.|++..+.
T Consensus 192 ~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 192 TIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 58998888888999999999999999886
No 211
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=53.18 E-value=1.4e+02 Score=27.27 Aligned_cols=97 Identities=20% Similarity=0.244 Sum_probs=59.4
Q ss_pred cEEEEEeC----CHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEec------CCCCCC
Q 023816 30 VHVLAVDD----SFVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY------CMPGMT 98 (276)
Q Consensus 30 ~~VLIVdD----~~~~~~~L~~~L~~~g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~------~mp~~~ 98 (276)
..|+.+|- .|.....+-+.++..+.-+-+ +.+.+|+++.. ..++|+|=+-+ ......
T Consensus 65 adIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~------------~~G~D~I~TTLsGYT~~t~~~~p 132 (192)
T PF04131_consen 65 ADIIALDATDRPRPETLEELIREIKEKYQLVMADISTLEEAINAA------------ELGFDIIGTTLSGYTPYTKGDGP 132 (192)
T ss_dssp -SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHH------------HTT-SEEE-TTTTSSTTSTTSSH
T ss_pred CCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHH------------HcCCCEEEcccccCCCCCCCCCC
Confidence 34666662 222334444444555533333 77888988876 34689887543 222445
Q ss_pred HHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhc
Q 023816 99 GYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLED 178 (276)
Q Consensus 99 G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~ 178 (276)
-+++++++.+. .+|||+=-....++...+|++.
T Consensus 133 D~~lv~~l~~~-----------------------------------------------~~pvIaEGri~tpe~a~~al~~ 165 (192)
T PF04131_consen 133 DFELVRELVQA-----------------------------------------------DVPVIAEGRIHTPEQAAKALEL 165 (192)
T ss_dssp HHHHHHHHHHT-----------------------------------------------TSEEEEESS--SHHHHHHHHHT
T ss_pred CHHHHHHHHhC-----------------------------------------------CCcEeecCCCCCHHHHHHHHhc
Confidence 68899999862 4788777777889999999999
Q ss_pred CCCeEEe
Q 023816 179 GAEDFIV 185 (276)
Q Consensus 179 Ga~d~l~ 185 (276)
||+..++
T Consensus 166 GA~aVVV 172 (192)
T PF04131_consen 166 GAHAVVV 172 (192)
T ss_dssp T-SEEEE
T ss_pred CCeEEEE
Confidence 9998876
No 212
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=53.12 E-value=1.4e+02 Score=28.00 Aligned_cols=67 Identities=15% Similarity=0.135 Sum_probs=43.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCE-EEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHH--HHHHH
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCK-VTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGY--ELLKK 105 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~-v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~--ell~~ 105 (276)
.+|..||=++...+..++-.+..|.. +.. ..+..+..... ...||+|++| |-..|+ ++++.
T Consensus 196 ~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~------------~~~~D~Vv~d---PPr~G~~~~~~~~ 260 (315)
T PRK03522 196 MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ------------GEVPDLVLVN---PPRRGIGKELCDY 260 (315)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc------------CCCCeEEEEC---CCCCCccHHHHHH
Confidence 47999999999888888888777753 333 44554433211 2359999999 334553 66677
Q ss_pred HHhhCC
Q 023816 106 IKVTTP 111 (276)
Q Consensus 106 Ir~~~p 111 (276)
|....|
T Consensus 261 l~~~~~ 266 (315)
T PRK03522 261 LSQMAP 266 (315)
T ss_pred HHHcCC
Confidence 765433
No 213
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=53.07 E-value=61 Score=31.17 Aligned_cols=89 Identities=15% Similarity=0.139 Sum_probs=53.9
Q ss_pred EEEEeCCHHHHHHHHHHHh---hC-C-CEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 32 VLAVDDSFVDRKVIERLLT---IS-S-CKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 32 VLIVdD~~~~~~~L~~~L~---~~-g-~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
|||=|.+......+++.++ .. . .++.. +++.+|+.+.+ ..++|+|++|- |+--++-+.
T Consensus 179 vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~------------~aGaDiImLDn----mspe~l~~a 242 (294)
T PRK06978 179 ILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETAL------------AHGAQSVLLDN----FTLDMMREA 242 (294)
T ss_pred EEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHH------------HcCCCEEEECC----CCHHHHHHH
Confidence 5665555444333444332 11 1 34443 88999999887 34689999993 343333333
Q ss_pred HHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCe
Q 023816 106 IKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAED 182 (276)
Q Consensus 106 Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d 182 (276)
++.. + .-.++-.|+.-..+.+.+..+.|+|-
T Consensus 243 v~~~-~---------------------------------------------~~~~lEaSGGIt~~ni~~yA~tGVD~ 273 (294)
T PRK06978 243 VRVT-A---------------------------------------------GRAVLEVSGGVNFDTVRAFAETGVDR 273 (294)
T ss_pred HHhh-c---------------------------------------------CCeEEEEECCCCHHHHHHHHhcCCCE
Confidence 3321 1 23467788888888888888889853
No 214
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=53.07 E-value=1.8e+02 Score=26.47 Aligned_cols=56 Identities=7% Similarity=-0.090 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhCCCEEEEE-------CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 41 DRKVIERLLTISSCKVTAV-------DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 41 ~~~~L~~~L~~~g~~v~~a-------~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
..+.+++.+++.|.+|+.. .+....++.+ ...++|+|++.. .+.+...+++.+++.
T Consensus 157 ~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l-----------~~~~~d~i~~~~--~~~~~~~~~~~~~~~ 219 (345)
T cd06338 157 VAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKA-----------KAAGPDAVVVAG--HFPDAVLLVRQMKEL 219 (345)
T ss_pred HHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHH-----------HhcCCCEEEECC--cchhHHHHHHHHHHc
Confidence 3455677788889887641 3445566666 556799998754 344677788888764
No 215
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=52.51 E-value=1.1e+02 Score=30.65 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=55.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCE-EEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHH--HH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCK-VTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGY--EL 102 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~-v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~--el 102 (276)
...-+|.-||=++...+..++-.+..|.. +.. +.+.++....+. ....||.||+| |-..|. ++
T Consensus 313 ~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~----------~~~~~d~VvvD---PPR~G~~~~~ 379 (432)
T COG2265 313 KRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW----------EGYKPDVVVVD---PPRAGADREV 379 (432)
T ss_pred ccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc----------ccCCCCEEEEC---CCCCCCCHHH
Confidence 34668999999999999999999988875 544 678887777762 34579999999 555655 59
Q ss_pred HHHHHhhCC
Q 023816 103 LKKIKVTTP 111 (276)
Q Consensus 103 l~~Ir~~~p 111 (276)
++.|.++.|
T Consensus 380 lk~l~~~~p 388 (432)
T COG2265 380 LKQLAKLKP 388 (432)
T ss_pred HHHHHhcCC
Confidence 999988665
No 216
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=52.46 E-value=72 Score=31.97 Aligned_cols=57 Identities=21% Similarity=0.227 Sum_probs=43.0
Q ss_pred CCceeEEEEecCCCC-CCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeE
Q 023816 82 GLKVDLIITDYCMPG-MTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPV 160 (276)
Q Consensus 82 ~~~~DlIL~D~~mp~-~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipi 160 (276)
+...|+|.+|.--+. ..-.+++++||+..| ++++
T Consensus 163 ~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p---------------------------------------------~~~v 197 (404)
T PRK06843 163 KAHVDILVIDSAHGHSTRIIELVKKIKTKYP---------------------------------------------NLDL 197 (404)
T ss_pred hcCCCEEEEECCCCCChhHHHHHHHHHhhCC---------------------------------------------CCcE
Confidence 456999999997763 566789999998777 5664
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEE
Q 023816 161 VIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 161 V~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
| +-.-...+....++++||+...
T Consensus 198 i-~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 198 I-AGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred E-EEecCCHHHHHHHHHcCCCEEE
Confidence 3 4444567788889999997764
No 217
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=51.97 E-value=1.9e+02 Score=26.42 Aligned_cols=52 Identities=17% Similarity=0.056 Sum_probs=34.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
..+|..||-++...+..++-++..|.++... +..+.+... ....||+|++|.
T Consensus 110 ~~~v~~vDis~~al~~A~~N~~~~~~~~~~~-D~~~~l~~~-----------~~~~fDlVv~NP 161 (251)
T TIGR03704 110 GIELHAADIDPAAVRCARRNLADAGGTVHEG-DLYDALPTA-----------LRGRVDILAANA 161 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCEEEEe-echhhcchh-----------cCCCEeEEEECC
Confidence 4688999999999998888888777655433 322222111 123699999985
No 218
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=51.91 E-value=2.4e+02 Score=28.43 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=24.5
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+|||+=-+-....++.+|+.+||+-...
T Consensus 331 ~~~viadGGi~~~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 331 GIPVIADGGIRYSGDIAKALAAGASAVML 359 (486)
T ss_pred CCeEEEcCCCCCHHHHHHHHHhCCCEEEE
Confidence 57888777888899999999999987654
No 219
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=51.89 E-value=74 Score=24.30 Aligned_cols=55 Identities=25% Similarity=0.189 Sum_probs=39.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCC
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM 94 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~--~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~m 94 (276)
..+|..+|=++...+..+..+...+. ++. ...+..+..+.+ ...++|+|++|.-.
T Consensus 23 ~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-----------~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 23 AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL-----------PDGKFDLIVTNPPY 80 (117)
T ss_dssp TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-----------TTT-EEEEEE--ST
T ss_pred CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-----------cCceeEEEEECCCC
Confidence 46889999999999999999988765 333 355666665444 56789999999744
No 220
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=51.79 E-value=66 Score=32.17 Aligned_cols=56 Identities=20% Similarity=0.331 Sum_probs=41.8
Q ss_pred CCceeEEEEecCCCC-CCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeE
Q 023816 82 GLKVDLIITDYCMPG-MTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPV 160 (276)
Q Consensus 82 ~~~~DlIL~D~~mp~-~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipi 160 (276)
+..+|+|.+|..-.. .+..+.+++||+.+| ++||
T Consensus 234 ~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~---------------------------------------------~~~v 268 (450)
T TIGR01302 234 KAGVDVIVIDSSHGHSIYVIDSIKEIKKTYP---------------------------------------------DLDI 268 (450)
T ss_pred HhCCCEEEEECCCCcHhHHHHHHHHHHHhCC---------------------------------------------CCCE
Confidence 346899999984432 456789999998766 7888
Q ss_pred EEEecCCCHHHHHHHHhcCCCeE
Q 023816 161 VIMSSENILARIDRCLEDGAEDF 183 (276)
Q Consensus 161 V~ls~~~~~~~~~~al~~Ga~d~ 183 (276)
++ -.-...+....++++||+.+
T Consensus 269 i~-G~v~t~~~a~~l~~aGad~i 290 (450)
T TIGR01302 269 IA-GNVATAEQAKALIDAGADGL 290 (450)
T ss_pred EE-EeCCCHHHHHHHHHhCCCEE
Confidence 77 33356678889999999776
No 221
>PLN02823 spermine synthase
Probab=51.49 E-value=44 Score=32.39 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=38.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhC-----CCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCC
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTIS-----SCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~-----g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp 95 (276)
.-+|.+||=|+...+..++++... +-++.. ..+|++.++. ...+||+|++|..-|
T Consensus 127 ~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~------------~~~~yDvIi~D~~dp 187 (336)
T PLN02823 127 VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK------------RDEKFDVIIGDLADP 187 (336)
T ss_pred CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh------------CCCCccEEEecCCCc
Confidence 357999999999999999998542 123433 6677766643 235799999997444
No 222
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=51.45 E-value=1.3e+02 Score=28.27 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=33.2
Q ss_pred ccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 023816 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 152 ~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~~ 203 (276)
+.....+|||.--. . ...+.+..|.++++..|-+.+++.+.+..+...
T Consensus 319 EAmA~G~PVIas~~-~---g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~ 366 (396)
T cd03818 319 EAMACGCLVVGSDT-A---PVREVITDGENGLLVDFFDPDALAAAVIELLDD 366 (396)
T ss_pred HHHHCCCCEEEcCC-C---CchhhcccCCceEEcCCCCHHHHHHHHHHHHhC
Confidence 34445788886322 2 344566788899999999999997777666543
No 223
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=51.15 E-value=1e+02 Score=29.10 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=21.7
Q ss_pred CCeEEEEecC-CCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSE-NILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~-~~~~~~~~al~~Ga~d~l~ 185 (276)
++|+|+.-++ -..+...++++.|+..+=.
T Consensus 200 ~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv 229 (282)
T TIGR01859 200 NIPLVLHGASGIPEEQIKKAIKLGIAKINI 229 (282)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCEEEE
Confidence 4898888544 4566788999999988733
No 224
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=50.99 E-value=72 Score=27.47 Aligned_cols=84 Identities=7% Similarity=0.084 Sum_probs=57.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhC--CCEEEEECCH-------HHHHHHhcccccccccCCCCCceeEEEEecCCCCC
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTIS--SCKVTAVDSG-------RRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM 97 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~--g~~v~~a~~g-------~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~ 97 (276)
....+|.++...+...+.+.+.|+.. |.++..+.+| ++.++.+ .+.++|+|++-+-+|..
T Consensus 46 ~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I-----------~~~~pdiv~vglG~PkQ 114 (172)
T PF03808_consen 46 QRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRI-----------NASGPDIVFVGLGAPKQ 114 (172)
T ss_pred HcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHH-----------HHcCCCEEEEECCCCHH
Confidence 34678999999999888888888765 6777765544 3344444 67789999999877764
Q ss_pred CHHHHHHHHHhhCCCCcccchheehhh
Q 023816 98 TGYELLKKIKVTTPFNFLYSTIIVFLN 124 (276)
Q Consensus 98 ~G~ell~~Ir~~~p~~~~~~~~~~~~~ 124 (276)
. .++.+.++..+.. ++-.+|.+..
T Consensus 115 E--~~~~~~~~~l~~~-v~i~vG~~~d 138 (172)
T PF03808_consen 115 E--RWIARHRQRLPAG-VIIGVGGAFD 138 (172)
T ss_pred H--HHHHHHHHHCCCC-EEEEECchhh
Confidence 3 4677777766633 4444444433
No 225
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=50.98 E-value=1.8e+02 Score=29.74 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=24.6
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
.+|||+=-+-....++.+|+.+||+-...=
T Consensus 344 ~v~vIadGGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 344 GVPCIADGGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred CCeEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 478777667788999999999999877653
No 226
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=50.86 E-value=1.5e+02 Score=25.44 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=27.0
Q ss_pred CeE-EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHH
Q 023816 158 IPV-VIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 200 (276)
Q Consensus 158 ipi-V~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l 200 (276)
.|+ +.+..+.....+..+.+.|++..+.-....++..+.++.+
T Consensus 57 ~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~ 100 (210)
T TIGR01163 57 LPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQLI 100 (210)
T ss_pred CcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHH
Confidence 454 4355556667788888999998877654444444444433
No 227
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=50.71 E-value=1.8e+02 Score=25.73 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=26.8
Q ss_pred CeEEEEecCCCHHHHHH---HHhcCCCeEEeCCC-CHHHHHHHHHHHH
Q 023816 158 IPVVIMSSENILARIDR---CLEDGAEDFIVKPV-KLSDVKRIKDYLT 201 (276)
Q Consensus 158 ipiV~ls~~~~~~~~~~---al~~Ga~d~l~KPv-~~~~L~~~~~~l~ 201 (276)
..+++=....+.....+ +++.|++.++..=+ +.++++++...+.
T Consensus 60 ~~~~VRvn~~~~~~~~~Dl~~l~~g~~gI~lP~ves~~~~~~~~~~~~ 107 (221)
T PF03328_consen 60 SEIIVRVNSLDSPHIERDLEALDAGADGIVLPKVESAEDARQAVAALR 107 (221)
T ss_dssp SEEEEE-SSTTCHHHHHHHHHHHTTSSEEEETT--SHHHHHHHHHHHS
T ss_pred ccceecCCCCCcchhhhhhhhcccCCCeeeccccCcHHHHHHHHHHHh
Confidence 45555555555555555 99999999977655 4556655555443
No 228
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=50.53 E-value=1.2e+02 Score=28.82 Aligned_cols=132 Identities=14% Similarity=0.071 Sum_probs=72.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCC--HHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT--GYELLKK 105 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~--G~ell~~ 105 (276)
...|++.||-...+++|..+ ....-.+.. -.|..+....+.... ..++-=.++.|--||..+ |+.+.+.
T Consensus 25 ~~d~i~~EDTR~t~kLL~~~-~I~~~~~~~~~hn~~~~~~~l~~~l-------~~g~~valvSDAG~P~ISDPG~~LV~~ 96 (276)
T TIGR00096 25 CVDLFAEEDTRTSKLLLHLG-IIATPKAFHIDNEFQEKQNLLAAKL-------EIGNNIAVSSDAGPPLISDPGHLLVAC 96 (276)
T ss_pred hCCEEEecCchhHHHHHHhc-CCCCceEEEecccHhHHHHHHHHHH-------HcCCcEEEEecCCCCCcCCccHHHHHH
Confidence 35678889888777766654 222212222 334433333331111 333445778999999865 9999999
Q ss_pred HHhhCCCCcccchheehhhhhhhhhhhh--hccccCCcCCCCCccccccc----CCCCCeEEEEecCCCHHH
Q 023816 106 IKVTTPFNFLYSTIIVFLNLQNLFLFIL--SICFCFPFFFPSNNLEQDSS----ALREIPVVIMSSENILAR 171 (276)
Q Consensus 106 Ir~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~ipiV~ls~~~~~~~ 171 (276)
.++.. .-+..|.-=+-+...+...| +..|||.+|-|..+-++..- ...+.++|+..+......
T Consensus 97 ~~~~~---i~v~~ipG~sA~~~Al~~SG~~~~~f~F~GFlp~k~~~r~~~l~~l~~~~~t~ifyEsp~Rl~~ 165 (276)
T TIGR00096 97 REKAN---IIVVPLPGAAALTAALCASGPATDRFFFGGFLPKKSKRRQALKAYIAEERTTVFFYESHHRLLT 165 (276)
T ss_pred HHHCC---CeEEcCChHHHHHHHHHhcCCCCCceEEeeeCCCChHHHHHHHHHHhCCCCeEEEEECcHhHHH
Confidence 98743 11111111111111111111 26899999999887666542 244677777766554433
No 229
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=50.32 E-value=23 Score=32.69 Aligned_cols=50 Identities=20% Similarity=0.273 Sum_probs=36.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-------CHHHHHHHhcccccccccCCCCCceeEEEE
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVD-------SGRRALQFLGLDEEQSINGFDGLKVDLIIT 90 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~-------~g~~al~~l~~~~~~~~~~~~~~~~DlIL~ 90 (276)
|||||+..+-.....|.+.|+..|+++.... +.++.-+.+ ...+||+||-
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~-----------~~~~pd~Vin 57 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLL-----------EAFKPDVVIN 57 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHH-----------HHH--SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHH-----------HHhCCCeEec
Confidence 6899999999999999999999999988863 434444444 4457998873
No 230
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=50.11 E-value=73 Score=28.50 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=39.7
Q ss_pred cEEEEEeCCH------HHHHHHHHHHhhCCCEEEEECCHHH-HHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHH
Q 023816 30 VHVLAVDDSF------VDRKVIERLLTISSCKVTAVDSGRR-ALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYEL 102 (276)
Q Consensus 30 ~~VLIVdD~~------~~~~~L~~~L~~~g~~v~~a~~g~~-al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~el 102 (276)
+|||++-... .....+.+.|...|++|........ ..+.+ ...++|+|.+-......-....
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~-----------~~~~~diih~~~~~~~~~~~~~ 69 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKI-----------EIINADIVHLHWIHGGFLSIED 69 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhCh-----------hcccCCEEEEEccccCccCHHH
Confidence 4677776553 3556677788889998887443332 33333 5668999987654433334444
Q ss_pred HHHH
Q 023816 103 LKKI 106 (276)
Q Consensus 103 l~~I 106 (276)
+.++
T Consensus 70 ~~~~ 73 (365)
T cd03825 70 LSKL 73 (365)
T ss_pred HHHH
Confidence 4444
No 231
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=49.62 E-value=1.5e+02 Score=26.65 Aligned_cols=30 Identities=27% Similarity=0.342 Sum_probs=21.3
Q ss_pred CCHHHHHHHHhcCCCeEEeCCCCHHHHHHHH
Q 023816 167 NILARIDRCLEDGAEDFIVKPVKLSDVKRIK 197 (276)
Q Consensus 167 ~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~ 197 (276)
-+.+..+.|+++|| +|+.-|..-.++.+..
T Consensus 71 ~~~~~~~~a~~aGA-~fivsp~~~~~v~~~~ 100 (206)
T PRK09140 71 LSPEQVDRLADAGG-RLIVTPNTDPEVIRRA 100 (206)
T ss_pred CCHHHHHHHHHcCC-CEEECCCCCHHHHHHH
Confidence 35678889999999 5777776666664433
No 232
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=49.52 E-value=83 Score=29.85 Aligned_cols=68 Identities=21% Similarity=0.192 Sum_probs=47.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCC--C---EEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC-----C
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISS--C---KVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM-----T 98 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g--~---~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~-----~ 98 (276)
-+|.+||=|+...+..+++|.... . ++. ..++|.+-++.. .. +||+||+|..=|.. -
T Consensus 101 e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~-----------~~-~fDvIi~D~tdp~gp~~~Lf 168 (282)
T COG0421 101 ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC-----------EE-KFDVIIVDSTDPVGPAEALF 168 (282)
T ss_pred ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC-----------CC-cCCEEEEcCCCCCCcccccC
Confidence 467888999999999999997654 2 333 377777666654 23 79999999977731 2
Q ss_pred HHHHHHHHHhh
Q 023816 99 GYELLKKIKVT 109 (276)
Q Consensus 99 G~ell~~Ir~~ 109 (276)
..++.+.+++.
T Consensus 169 t~eFy~~~~~~ 179 (282)
T COG0421 169 TEEFYEGCRRA 179 (282)
T ss_pred CHHHHHHHHHh
Confidence 35677777653
No 233
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=49.09 E-value=2.2e+02 Score=26.32 Aligned_cols=44 Identities=18% Similarity=0.174 Sum_probs=32.1
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCe------EEeCCCCHHHHHHHHHHHHHh
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAED------FIVKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d------~l~KPv~~~~L~~~~~~l~~~ 203 (276)
++|||..-+-...+++.++++.||+. ++.+| ..+.++++.+.+.
T Consensus 234 ~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p---~~~~~i~~~l~~~ 283 (300)
T TIGR01037 234 DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRG---FAFKKIIEGLIAF 283 (300)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCc---hHHHHHHHHHHHH
Confidence 48999888888899999999999886 56677 3334555555433
No 234
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=48.84 E-value=2.4e+02 Score=28.13 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=34.1
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 29 EVHVLAVDDSFV---DRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 29 ~~~VLIVdD~~~---~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
..+|.+|+-++. ....+..+-+..|+.+..+.+..+..+.+. ....+|+||+|.
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~----------~~~~~DlVlIDt 307 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALE----------QLRDCDVILIDT 307 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHH----------HhCCCCEEEEeC
Confidence 467888876653 223455555667777777666665544442 123589999996
No 235
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=48.09 E-value=1.2e+02 Score=30.93 Aligned_cols=57 Identities=16% Similarity=0.341 Sum_probs=39.2
Q ss_pred CCceeEEEEecCCCC-CCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeE
Q 023816 82 GLKVDLIITDYCMPG-MTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPV 160 (276)
Q Consensus 82 ~~~~DlIL~D~~mp~-~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipi 160 (276)
+...|+|.+|.-=.. ...++.+++||+..| +++|
T Consensus 251 ~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~---------------------------------------------~~~v 285 (495)
T PTZ00314 251 EAGVDVLVVDSSQGNSIYQIDMIKKLKSNYP---------------------------------------------HVDI 285 (495)
T ss_pred HCCCCEEEEecCCCCchHHHHHHHHHHhhCC---------------------------------------------CceE
Confidence 446899999983211 223689999998666 5666
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEE
Q 023816 161 VIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 161 V~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
++ -.-...+....+.++||+-..
T Consensus 286 ~a-G~V~t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 286 IA-GNVVTADQAKNLIDAGADGLR 308 (495)
T ss_pred EE-CCcCCHHHHHHHHHcCCCEEE
Confidence 65 223456788899999998663
No 236
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=48.05 E-value=80 Score=29.82 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=24.0
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
++|||+=.+-..+++..+|++.|++..|+-
T Consensus 175 ~vPvIvDAGiG~pSdaa~AMElG~daVLvN 204 (247)
T PF05690_consen 175 DVPVIVDAGIGTPSDAAQAMELGADAVLVN 204 (247)
T ss_dssp SSSBEEES---SHHHHHHHHHTT-SEEEES
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCceeehh
Confidence 699999999999999999999999999974
No 237
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=47.25 E-value=2.8e+02 Score=27.85 Aligned_cols=29 Identities=10% Similarity=0.295 Sum_probs=25.6
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+|||+=-+-...+++.+|+.+||+....
T Consensus 256 ~vpVIAdGGI~~~~Di~KALalGA~aVmv 284 (404)
T PRK06843 256 NICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 58998888888999999999999987765
No 238
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=47.01 E-value=88 Score=30.17 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=46.1
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHhhCCCEEEEEC---------CHHHHHHHhcccccccccCCCCCceeEEEEecCCC
Q 023816 30 VHVLAVDDSFVDR-----KVIERLLTISSCKVTAVD---------SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (276)
Q Consensus 30 ~~VLIVdD~~~~~-----~~L~~~L~~~g~~v~~a~---------~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp 95 (276)
-|+|||-|..... +.+.+.|+..|+++..++ +.+++++.+ ++.++|+|| -+.
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~-----------~~~~~D~II---avG 89 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAM-----------REFEPDWII---ALG 89 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHH-----------HhcCCCEEE---EeC
Confidence 4789998876544 567888888888776653 245566665 566889887 356
Q ss_pred CCCHHHHHHHHHh
Q 023816 96 GMTGYELLKKIKV 108 (276)
Q Consensus 96 ~~~G~ell~~Ir~ 108 (276)
|.+-+++.|.+..
T Consensus 90 GGSviD~AK~ia~ 102 (375)
T cd08179 90 GGSPIDAAKAMWI 102 (375)
T ss_pred CccHHHHHHHHHH
Confidence 7788888888753
No 239
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=47.00 E-value=1.9e+02 Score=24.87 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=31.5
Q ss_pred ccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 152 ~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
+.....+|||+...... ..+..+.|..+++.++.+.+++.+.+..+..
T Consensus 271 Ea~a~G~Pvi~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 271 EAMAFGLPVISFDCPTG---PSEIIEDGVNGLLVPNGDVEALAEALLRLME 318 (348)
T ss_pred HHHHcCCCEEEecCCCc---hHhhhccCcceEEeCCCCHHHHHHHHHHHHc
Confidence 34445788875432222 2344566778999999999998777776643
No 240
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=46.59 E-value=76 Score=26.51 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=29.5
Q ss_pred ccEEEEEeCCHHHH-----------HHHHHHHhhC---CCEEEE-ECCHH---HHHHHhcccccccccCCCCCceeEEEE
Q 023816 29 EVHVLAVDDSFVDR-----------KVIERLLTIS---SCKVTA-VDSGR---RALQFLGLDEEQSINGFDGLKVDLIIT 90 (276)
Q Consensus 29 ~~~VLIVdD~~~~~-----------~~L~~~L~~~---g~~v~~-a~~g~---~al~~l~~~~~~~~~~~~~~~~DlIL~ 90 (276)
+++|+++.|+.... ..+.+.|.+. ++++.- .-+|. +.++.+.. +...+||+|++
T Consensus 2 ~~~i~~~GDSit~G~g~~~~~~~~~~~l~~~l~~~~~~~~~~~n~g~~G~t~~~~~~~l~~--------~~~~~pd~Vii 73 (191)
T cd01836 2 PLRLLVLGDSTAAGVGVETQDQALAGQLARGLAAITGRGVRWRLFAKTGATSADLLRQLAP--------LPETRFDVAVI 73 (191)
T ss_pred CeEEEEEeccccccccccchhccHHHHHHHHHHHhhCCceEEEEEecCCcCHHHHHHHHHh--------cccCCCCEEEE
Confidence 56677776665433 2245555432 444443 33443 44554421 24568999998
Q ss_pred ec
Q 023816 91 DY 92 (276)
Q Consensus 91 D~ 92 (276)
-+
T Consensus 74 ~~ 75 (191)
T cd01836 74 SI 75 (191)
T ss_pred Ee
Confidence 33
No 241
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=46.56 E-value=1.4e+02 Score=26.22 Aligned_cols=70 Identities=19% Similarity=0.202 Sum_probs=46.9
Q ss_pred EEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhh
Q 023816 56 VTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILS 134 (276)
Q Consensus 56 v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~ 134 (276)
+.. +++.+|+.+.+ +.++|.|.+|-.-| .+--++++.++...+
T Consensus 83 I~VEv~~~ee~~ea~------------~~g~d~I~lD~~~~-~~~~~~v~~l~~~~~----------------------- 126 (169)
T PF01729_consen 83 IEVEVENLEEAEEAL------------EAGADIIMLDNMSP-EDLKEAVEELRELNP----------------------- 126 (169)
T ss_dssp EEEEESSHHHHHHHH------------HTT-SEEEEES-CH-HHHHHHHHHHHHHTT-----------------------
T ss_pred EEEEcCCHHHHHHHH------------HhCCCEEEecCcCH-HHHHHHHHHHhhcCC-----------------------
Confidence 443 88999998887 24599999996433 233345555555444
Q ss_pred ccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 135 ICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
-..|.+|+.-..+.+.+..+.|+|-+-
T Consensus 127 -----------------------~v~ie~SGGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 127 -----------------------RVKIEASGGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp -----------------------TSEEEEESSSSTTTHHHHHHTT-SEEE
T ss_pred -----------------------cEEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 277788888888889898899986553
No 242
>PRK05670 anthranilate synthase component II; Provisional
Probab=46.56 E-value=25 Score=30.48 Aligned_cols=30 Identities=13% Similarity=0.059 Sum_probs=25.6
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECC
Q 023816 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDS 61 (276)
Q Consensus 32 VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~ 61 (276)
|||||-....-..+.++|.+.|+++.....
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~ 31 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRN 31 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEEC
Confidence 899998888888899999999998887654
No 243
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=46.47 E-value=81 Score=29.25 Aligned_cols=59 Identities=15% Similarity=0.073 Sum_probs=43.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCC--EEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecC
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC 93 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~--~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~ 93 (276)
.-+|.-+|-++...+.-+..++..|+ +|.. ..+..+.|..+..... ....||+|++|..
T Consensus 104 ~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~------~~~~fD~iFiDad 165 (247)
T PLN02589 104 DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGK------YHGTFDFIFVDAD 165 (247)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccc------cCCcccEEEecCC
Confidence 35899999999999999999998885 4543 6677777776621100 1257999999975
No 244
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=46.46 E-value=1.5e+02 Score=28.31 Aligned_cols=69 Identities=16% Similarity=0.184 Sum_probs=46.5
Q ss_pred EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccc
Q 023816 58 AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICF 137 (276)
Q Consensus 58 ~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (276)
-+++.++|.+.+ ..++|+|++| .|...+--++.+.+++..+
T Consensus 195 Ev~tleqa~ea~------------~agaDiI~LD-n~~~e~l~~av~~~~~~~~-------------------------- 235 (284)
T PRK06096 195 EADTPKEAIAAL------------RAQPDVLQLD-KFSPQQATEIAQIAPSLAP-------------------------- 235 (284)
T ss_pred ECCCHHHHHHHH------------HcCCCEEEEC-CCCHHHHHHHHHHhhccCC--------------------------
Confidence 378999999887 3468999999 3433333344444432222
Q ss_pred cCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 138 CFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
-..+-.|+.-..+.+.+..+.|+|-+.+
T Consensus 236 --------------------~~~leaSGGI~~~ni~~yA~tGvD~Is~ 263 (284)
T PRK06096 236 --------------------HCTLSLAGGINLNTLKNYADCGIRLFIT 263 (284)
T ss_pred --------------------CeEEEEECCCCHHHHHHHHhcCCCEEEE
Confidence 3467788888899998888999865443
No 245
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=46.33 E-value=2.9e+02 Score=28.27 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=39.9
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCH--HHHH
Q 023816 29 EVHVLAVDDSFV---DRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG--YELL 103 (276)
Q Consensus 29 ~~~VLIVdD~~~---~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G--~ell 103 (276)
+.+|++++-|+. ..+.+..+-+..|+.+..+.+..+..+.+.... +...+|+||+|. +|.+- .+.+
T Consensus 269 GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk-------~~~~~DvVLIDT--aGRs~kd~~lm 339 (436)
T PRK11889 269 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK-------EEARVDYILIDT--AGKNYRASETV 339 (436)
T ss_pred CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH-------hccCCCEEEEeC--ccccCcCHHHH
Confidence 346777776543 445556666677888877766554433331100 123589999996 34332 3445
Q ss_pred HHHHh
Q 023816 104 KKIKV 108 (276)
Q Consensus 104 ~~Ir~ 108 (276)
.++++
T Consensus 340 ~EL~~ 344 (436)
T PRK11889 340 EEMIE 344 (436)
T ss_pred HHHHH
Confidence 55543
No 246
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=46.00 E-value=75 Score=29.38 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=23.6
Q ss_pred EEEEE--eCCHHHHHHHHHHHhhCCCEEEEECC
Q 023816 31 HVLAV--DDSFVDRKVIERLLTISSCKVTAVDS 61 (276)
Q Consensus 31 ~VLIV--dD~~~~~~~L~~~L~~~g~~v~~a~~ 61 (276)
+++|+ |.+....+.+.+.+++.||++..++.
T Consensus 2 ~~~i~~~~~s~~s~~~~~~a~~~~g~~v~~i~~ 34 (300)
T PRK10446 2 KIAILSRDGTLYSCKRLREAAIQRGHLVEILDP 34 (300)
T ss_pred eEEEEecCCcchhHHHHHHHHHHcCCeEEEEeh
Confidence 34444 46667778888999999999998874
No 247
>PRK03612 spermidine synthase; Provisional
Probab=45.51 E-value=87 Score=31.91 Aligned_cols=68 Identities=25% Similarity=0.191 Sum_probs=42.0
Q ss_pred cEEEEEeCCHHHHHHHHH--HHhhC------CCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCC--
Q 023816 30 VHVLAVDDSFVDRKVIER--LLTIS------SCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT-- 98 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~--~L~~~------g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~-- 98 (276)
-+|.+||=|+...+..++ .+... +-++. ...|+++.++.. ..+||+|++|..-|...
T Consensus 322 ~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~------------~~~fDvIi~D~~~~~~~~~ 389 (521)
T PRK03612 322 EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL------------AEKFDVIIVDLPDPSNPAL 389 (521)
T ss_pred CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC------------CCCCCEEEEeCCCCCCcch
Confidence 588999999988888887 33321 11333 355666655433 34799999997655422
Q ss_pred ----HHHHHHHHHhh
Q 023816 99 ----GYELLKKIKVT 109 (276)
Q Consensus 99 ----G~ell~~Ir~~ 109 (276)
.-|+.+.+++.
T Consensus 390 ~~L~t~ef~~~~~~~ 404 (521)
T PRK03612 390 GKLYSVEFYRLLKRR 404 (521)
T ss_pred hccchHHHHHHHHHh
Confidence 22456565543
No 248
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.21 E-value=1.6e+02 Score=26.74 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=20.7
Q ss_pred CCHHHHHHHHhcCCCeEEeCCCCHHHHH
Q 023816 167 NILARIDRCLEDGAEDFIVKPVKLSDVK 194 (276)
Q Consensus 167 ~~~~~~~~al~~Ga~d~l~KPv~~~~L~ 194 (276)
-+.+..++|+++|+ +|++-|.--.++.
T Consensus 64 l~~e~a~~ai~aGA-~FivSP~~~~~vi 90 (201)
T PRK06015 64 LNAKQFEDAAKAGS-RFIVSPGTTQELL 90 (201)
T ss_pred cCHHHHHHHHHcCC-CEEECCCCCHHHH
Confidence 35678889999999 5888887666663
No 249
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=45.19 E-value=2.1e+02 Score=25.05 Aligned_cols=29 Identities=31% Similarity=0.354 Sum_probs=25.5
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++||++--+-...+++.++++.|++..+.
T Consensus 190 ~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 190 GIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred CCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 58998888888889999999999999876
No 250
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=45.14 E-value=57 Score=30.29 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=37.1
Q ss_pred ccEEEEE--------eCCHHHHHHHHHHHhhCCCEEEEEC-CHHHHHHHhcccccccccCCCCCceeEEEEecC
Q 023816 29 EVHVLAV--------DDSFVDRKVIERLLTISSCKVTAVD-SGRRALQFLGLDEEQSINGFDGLKVDLIITDYC 93 (276)
Q Consensus 29 ~~~VLIV--------dD~~~~~~~L~~~L~~~g~~v~~a~-~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~ 93 (276)
.+||.|+ |.+....+.+.+.|++.||++..++ ++.+.+..+ ...++|+++.=++
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~~~~~~~l-----------~~~~~d~vf~~lh 65 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKL-----------LELKPDKCFVALH 65 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCCchhHHHHh-----------hccCCCEEEEeCC
Confidence 4566655 3444566678888899999998876 445555555 4567999987553
No 251
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=44.92 E-value=1.5e+02 Score=26.73 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=24.5
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+|+++--+-...+++.++.+.|++..+.
T Consensus 184 ~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 184 EHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred CCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 47888877788899999999999998875
No 252
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=44.92 E-value=80 Score=26.62 Aligned_cols=52 Identities=17% Similarity=0.113 Sum_probs=35.6
Q ss_pred CCCccEEEEEeCCHHH---------HHHHHHHHhh-CCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEE
Q 023816 26 DTEEVHVLAVDDSFVD---------RKVIERLLTI-SSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89 (276)
Q Consensus 26 ~~~~~~VLIVdD~~~~---------~~~L~~~L~~-~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL 89 (276)
+...++|.|||.|.-. -+.+.+.|+. ..+++... +.++|.+.+ +.++++.+|
T Consensus 40 ~~~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~~~-~~~ea~~~l-----------~~g~~~~~i 101 (164)
T TIGR03061 40 NLDNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHFV-SAKEAEKGL-----------ADGKYYMVI 101 (164)
T ss_pred ccCCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceEEc-CHHHHHHHh-----------HcCcEEEEE
Confidence 4568899999866543 4455555554 34676644 888898888 677787776
No 253
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=44.77 E-value=95 Score=31.29 Aligned_cols=85 Identities=22% Similarity=0.212 Sum_probs=67.5
Q ss_pred cCCCCCCCCCCCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCC
Q 023816 16 EIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM 94 (276)
Q Consensus 16 ~~~~~~~~~~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~m 94 (276)
|............+..||+|.-.--..+.+-+.|...||.|.+ +.+.+++.+.+ .....|..+.|...
T Consensus 66 e~~v~~~~~~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~-----------~~~~~d~~~~~v~~ 134 (411)
T KOG1203|consen 66 EAEVSPPNNNSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLL-----------GVFFVDLGLQNVEA 134 (411)
T ss_pred eeeeccCCCCCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhh-----------cccccccccceeee
Confidence 3333333445566789999999999999999999999999887 77888888877 33457888999999
Q ss_pred CCCCHHHHHHHHHhhCC
Q 023816 95 PGMTGYELLKKIKVTTP 111 (276)
Q Consensus 95 p~~~G~ell~~Ir~~~p 111 (276)
+..++.+.+..+.+..+
T Consensus 135 ~~~~~~d~~~~~~~~~~ 151 (411)
T KOG1203|consen 135 DVVTAIDILKKLVEAVP 151 (411)
T ss_pred ccccccchhhhhhhhcc
Confidence 99999999999987665
No 254
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=44.56 E-value=84 Score=31.71 Aligned_cols=58 Identities=16% Similarity=0.252 Sum_probs=41.7
Q ss_pred CCCceeEEEEecCCC-CCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCe
Q 023816 81 DGLKVDLIITDYCMP-GMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIP 159 (276)
Q Consensus 81 ~~~~~DlIL~D~~mp-~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 159 (276)
.+...|+|++|..-. ..+-++.+++|+...| ++|
T Consensus 237 ~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p---------------------------------------------~~~ 271 (486)
T PRK05567 237 VEAGVDVLVVDTAHGHSEGVLDRVREIKAKYP---------------------------------------------DVQ 271 (486)
T ss_pred HHhCCCEEEEECCCCcchhHHHHHHHHHhhCC---------------------------------------------CCC
Confidence 345688999987432 3456678999988666 678
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 160 VVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 160 iV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
|++ -.-...+....+.++||+-..
T Consensus 272 vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 272 IIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred EEE-eccCCHHHHHHHHHcCCCEEE
Confidence 776 444567788899999997664
No 255
>cd04759 Rib_hydrolase ADP-ribosyl cyclase (also known as cyclic ADP-ribose hydrolase or CD38) synthesizes the second messenger cyclic-ADP ribose (cADPR), which in turn releases calcium from internal stores. Mammals possess two membrane proteins, CD38 and BST-1/CD157, which exhibit ADP-ribosyl cyclase function, as well as intracellular soluble ADP-ribose cyclases. CD38 is involved in differentiation, adhesion, and cell proliferation, as well as diseases such as AIDS, diabetes, and B-cell chronic lymphocytic leukemia. The extramembrane domain of CD38 acts as a multifunctional enzyme and can synthesize cADPR from NAD+, hydrolyze NAD+, and cADPR to ADPR, as well as catalyze the exchange of the nicotinamide group of NADP+ with nicotinic acid under acidic conditions to yield NAADP+ (nicotinic acid-adenine dinucleotide phosphate), a metabolite involved in Ca2+ mobilization from acidic stores.
Probab=44.41 E-value=63 Score=30.38 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=51.4
Q ss_pred CCCcceeeeccccCC-------------CCCCCCCCCCccEEEEEeC---------CHHHHHHHHHHHhhCCCEEEEECC
Q 023816 4 TNGVASLRLISDEID-------------GFDLSPSDTEEVHVLAVDD---------SFVDRKVIERLLTISSCKVTAVDS 61 (276)
Q Consensus 4 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~VLIVdD---------~~~~~~~L~~~L~~~g~~v~~a~~ 61 (276)
.-||+.|.|=|+... -.-|.|.....++|.||.| .....+.|+.+|+..++.+...+|
T Consensus 145 A~G~V~VmLNGS~~~~af~~~S~Fg~vElp~L~p~kV~~v~i~vvh~l~~~~~~sC~~~Si~~L~~~l~~~ni~~sC~dn 224 (242)
T cd04759 145 ACGVVHVMLNGSASGGAFRNNSTFGSVEIPNLNPDKVSQVIIWVIHDLEGPNRDSCGSGSIKELESILKKRNIQFSCIDN 224 (242)
T ss_pred cCCeEEEEEcCCCCCCCcCCCCceeeEEcccCCccceeeEEEEEEcCCCCCcccccccchHHHHHHHHHHcCCceEEecC
Confidence 358888888887666 3345666677889999988 334568899999999999999999
Q ss_pred HHHHHHHh
Q 023816 62 GRRALQFL 69 (276)
Q Consensus 62 g~~al~~l 69 (276)
.+++.-..
T Consensus 225 ~r~v~~lq 232 (242)
T cd04759 225 YRPVKFLQ 232 (242)
T ss_pred cHHHHHHH
Confidence 98875543
No 256
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=44.29 E-value=1.6e+02 Score=26.73 Aligned_cols=80 Identities=14% Similarity=0.238 Sum_probs=55.6
Q ss_pred HHHHHHHhhCCCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCC-CCCHHHHHHHHHhhCCCCcccchhe
Q 023816 43 KVIERLLTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-GMTGYELLKKIKVTTPFNFLYSTII 120 (276)
Q Consensus 43 ~~L~~~L~~~g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp-~~~G~ell~~Ir~~~p~~~~~~~~~ 120 (276)
..+.+..++.|+-+. .+.+..|+.+.+ +...|+|=+ -| +.-|.+.++.++...|
T Consensus 99 ~~v~~~~~~~~i~~iPG~~T~~E~~~A~------------~~Gad~vkl---FPa~~~G~~~ik~l~~~~p--------- 154 (213)
T PRK06552 99 RETAKICNLYQIPYLPGCMTVTEIVTAL------------EAGSEIVKL---FPGSTLGPSFIKAIKGPLP--------- 154 (213)
T ss_pred HHHHHHHHHcCCCEECCcCCHHHHHHHH------------HcCCCEEEE---CCcccCCHHHHHHHhhhCC---------
Confidence 344445556676555 388888888776 245677665 23 4467888999987554
Q ss_pred ehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeE
Q 023816 121 VFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDF 183 (276)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~ 183 (276)
++|++ -++.-..+.+.+.+++|++.+
T Consensus 155 ------------------------------------~ip~~-atGGI~~~N~~~~l~aGa~~v 180 (213)
T PRK06552 155 ------------------------------------QVNVM-VTGGVNLDNVKDWFAAGADAV 180 (213)
T ss_pred ------------------------------------CCEEE-EECCCCHHHHHHHHHCCCcEE
Confidence 67766 677777889999999997765
No 257
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=44.20 E-value=1.5e+02 Score=29.34 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=41.7
Q ss_pred CceeEEEEecCCCC-CCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEE
Q 023816 83 LKVDLIITDYCMPG-MTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVV 161 (276)
Q Consensus 83 ~~~DlIL~D~~mp~-~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV 161 (276)
..+|+|++|.-=.. ..-++.+++||+.+| ..+ |
T Consensus 120 ~~~d~iviD~AhGhs~~~i~~ik~ir~~~p---------------------------------------------~~~-v 153 (343)
T TIGR01305 120 PQLKFICLDVANGYSEHFVEFVKLVREAFP---------------------------------------------EHT-I 153 (343)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHhhCC---------------------------------------------CCe-E
Confidence 46999999985443 335689999998777 433 3
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 162 IMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 162 ~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
+.-.-...+....++++|||...+=
T Consensus 154 iaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 154 MAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred EEecccCHHHHHHHHHcCCCEEEEc
Confidence 3333456788889999999987644
No 258
>PRK13566 anthranilate synthase; Provisional
Probab=43.82 E-value=41 Score=36.04 Aligned_cols=38 Identities=24% Similarity=0.205 Sum_probs=31.9
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCH
Q 023816 25 SDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSG 62 (276)
Q Consensus 25 ~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g 62 (276)
....+.+|||||....+-..+.++|+..|++|..+...
T Consensus 522 ~~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~ 559 (720)
T PRK13566 522 AVGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYG 559 (720)
T ss_pred CCCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECC
Confidence 45567899999988778889999999999999886654
No 259
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=43.75 E-value=2.4e+02 Score=27.47 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=41.3
Q ss_pred ceeEEEEecCCCC-CCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEE
Q 023816 84 KVDLIITDYCMPG-MTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVI 162 (276)
Q Consensus 84 ~~DlIL~D~~mp~-~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ 162 (276)
..|+|++|.-=.. ..-++.+++||+..| .|+|+
T Consensus 108 ~~d~i~~D~ahg~s~~~~~~i~~i~~~~p----------------------------------------------~~~vi 141 (321)
T TIGR01306 108 TPEYITIDIAHGHSNSVINMIKHIKTHLP----------------------------------------------DSFVI 141 (321)
T ss_pred CCCEEEEeCccCchHHHHHHHHHHHHhCC----------------------------------------------CCEEE
Confidence 3699999974332 345678899987665 46555
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeC
Q 023816 163 MSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 163 ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
.-.-...+....++++||+...+=
T Consensus 142 ~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 142 AGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred EecCCCHHHHHHHHHcCcCEEEEC
Confidence 554567888999999999988643
No 260
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=43.66 E-value=2.5e+02 Score=27.45 Aligned_cols=70 Identities=16% Similarity=0.149 Sum_probs=45.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCE-EE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCC-HHHHHHHHH
Q 023816 31 HVLAVDDSFVDRKVIERLLTISSCK-VT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT-GYELLKKIK 107 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g~~-v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~-G~ell~~Ir 107 (276)
+|+.||-++...+..++-++..|+. +. ...+..+.+..+.. ....+|+|++|- |... ..++++.|.
T Consensus 316 ~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~---------~~~~~D~vi~dP--Pr~G~~~~~l~~l~ 384 (431)
T TIGR00479 316 SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPW---------AGQIPDVLLLDP--PRKGCAAEVLRTII 384 (431)
T ss_pred EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHh---------cCCCCCEEEECc--CCCCCCHHHHHHHH
Confidence 7899999999999888888777652 33 25566555543210 234589999984 3322 357777777
Q ss_pred hhCC
Q 023816 108 VTTP 111 (276)
Q Consensus 108 ~~~p 111 (276)
...|
T Consensus 385 ~l~~ 388 (431)
T TIGR00479 385 ELKP 388 (431)
T ss_pred hcCC
Confidence 5443
No 261
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=43.54 E-value=87 Score=27.35 Aligned_cols=73 Identities=19% Similarity=0.151 Sum_probs=42.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEE--------------ECCHHHHHHHhcccccccccCCCCCceeEEEEecCC
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTA--------------VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM 94 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~--------------a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~m 94 (276)
..+|||++.-.+..+.+.+.|+...+++.. ++.-.-...++ .++.+...||+||||=+=
T Consensus 33 ~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at~~~~~-------~~p~~~~~yd~II~DEcH 105 (148)
T PF07652_consen 33 RLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHATYGHFL-------LNPCRLKNYDVIIMDECH 105 (148)
T ss_dssp T--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHHHHHHH-------HTSSCTTS-SEEEECTTT
T ss_pred cCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHHHHHHh-------cCcccccCccEEEEeccc
Confidence 679999999999999999999877644432 22222333433 123356689999999642
Q ss_pred -CCCCHHHHHHHHHh
Q 023816 95 -PGMTGYELLKKIKV 108 (276)
Q Consensus 95 -p~~~G~ell~~Ir~ 108 (276)
-+-..+-+...|++
T Consensus 106 ~~Dp~sIA~rg~l~~ 120 (148)
T PF07652_consen 106 FTDPTSIAARGYLRE 120 (148)
T ss_dssp --SHHHHHHHHHHHH
T ss_pred cCCHHHHhhheeHHH
Confidence 22223334444443
No 262
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=43.19 E-value=2.6e+02 Score=26.78 Aligned_cols=70 Identities=26% Similarity=0.358 Sum_probs=46.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCC--EEEE--ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCC--HHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVTA--VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT--GYEL 102 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~--~v~~--a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~--G~el 102 (276)
.+.++++||....++.|..+ |. .... ..|.++....+... +.+++-=.++.|--||..+ |+++
T Consensus 30 ~~D~iaaEDTR~t~~LL~~~----~I~~~~is~h~hne~~~~~~li~~-------l~~g~~valVSDAG~P~ISDPG~~L 98 (275)
T COG0313 30 EVDVIAAEDTRVTRKLLSHL----GIKTPLISYHEHNEKEKLPKLIPL-------LKKGKSVALVSDAGTPLISDPGYEL 98 (275)
T ss_pred hCCEEEEeccHHHHHHHHHh----CCCCceecccCCcHHHHHHHHHHH-------HhcCCeEEEEecCCCCcccCccHHH
Confidence 46799999999888877654 33 1222 34555555554221 1344445678999999865 9999
Q ss_pred HHHHHhh
Q 023816 103 LKKIKVT 109 (276)
Q Consensus 103 l~~Ir~~ 109 (276)
.+..++.
T Consensus 99 V~~a~~~ 105 (275)
T COG0313 99 VRAAREA 105 (275)
T ss_pred HHHHHHc
Confidence 9999873
No 263
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=43.05 E-value=2.2e+02 Score=28.55 Aligned_cols=53 Identities=23% Similarity=0.214 Sum_probs=38.7
Q ss_pred ccEEEEEeC-CHHHHHHHHHHHhhCCCEEEEECC--HHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 29 EVHVLAVDD-SFVDRKVIERLLTISSCKVTAVDS--GRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 29 ~~~VLIVdD-~~~~~~~L~~~L~~~g~~v~~a~~--g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
+=|||+.+| =--.++.+.++|++.|+++..++. ..+.++.+ ...+.++|++.-
T Consensus 102 GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~-----------~~~~tk~v~lEt 157 (396)
T COG0626 102 GDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAI-----------KEPNTKLVFLET 157 (396)
T ss_pred CCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHh-----------cccCceEEEEeC
Confidence 457888887 345678899999999999998774 44455554 234689999876
No 264
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=42.63 E-value=7.4 Score=33.60 Aligned_cols=107 Identities=27% Similarity=0.365 Sum_probs=67.0
Q ss_pred EEEeCCHHHHHHHHHHHhhCCCE----EEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 33 LAVDDSFVDRKVIERLLTISSCK----VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 33 LIVdD~~~~~~~L~~~L~~~g~~----v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
+.+||+...+..+.+++....+. .......-+..... ....+|+++.++.||.+.|++++.++..
T Consensus 19 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (340)
T KOG1601|consen 19 LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPESFVAA-----------TSFSIDLSVPSLDMPGLEGFSLFVSENN 87 (340)
T ss_pred cccccccCCcccccccccccccccccccccccchhhhhhcc-----------cccccccccccccccccccccccccccc
Confidence 77788877777777666553222 11122211100000 1146899999999999999998888874
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
+ ....++++++++...........+..|+.+|+.||+
T Consensus 88 --~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 124 (340)
T KOG1601|consen 88 --P-----------------------------------------NSLRHPPVPSMPSSNSSSSSSSSVSPSASLELTKPD 124 (340)
T ss_pred --C-----------------------------------------CCCCCCCcccccccccchhhhcccCCcccccccccc
Confidence 1 122244566666666555566777778999999998
Q ss_pred CHHHH
Q 023816 189 KLSDV 193 (276)
Q Consensus 189 ~~~~L 193 (276)
...++
T Consensus 125 ~~~~~ 129 (340)
T KOG1601|consen 125 RKNRL 129 (340)
T ss_pred cCCCc
Confidence 74444
No 265
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=42.61 E-value=73 Score=26.24 Aligned_cols=54 Identities=22% Similarity=0.209 Sum_probs=41.0
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 26 ~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
+-.+.+|.++.+.. ..+.+.+.... +.++..+.+..++++.+ ..++.|.++.|.
T Consensus 107 dl~~~~i~~~~g~~-~~~~l~~~~~~-~~~~~~~~~~~~~~~~l-----------~~g~~d~~i~~~ 160 (225)
T PF00497_consen 107 DLKGKRIGVVRGSS-YADYLKQQYPS-NINIVEVDSPEEALEAL-----------LSGRIDAFIVDE 160 (225)
T ss_dssp GGTTSEEEEETTSH-HHHHHHHHTHH-TSEEEEESSHHHHHHHH-----------HTTSSSEEEEEH
T ss_pred hhcCcccccccchh-HHHHhhhhccc-hhhhcccccHHHHHHHH-----------hcCCeeeeeccc
Confidence 33556888887754 55556655433 78888999999999999 778999999985
No 266
>PLN02476 O-methyltransferase
Probab=42.55 E-value=1.1e+02 Score=28.98 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=42.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCE--EEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecC
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCK--VTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC 93 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~--v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~ 93 (276)
-+|.-+|-++...+..++.++..|+. +.. ..+..+.|..+.... ....||+|++|..
T Consensus 144 G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~-------~~~~FD~VFIDa~ 203 (278)
T PLN02476 144 GCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNG-------EGSSYDFAFVDAD 203 (278)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcc-------cCCCCCEEEECCC
Confidence 36899999999999999999999873 443 567677776552110 2357999999974
No 267
>CHL00101 trpG anthranilate synthase component 2
Probab=42.42 E-value=29 Score=30.21 Aligned_cols=32 Identities=13% Similarity=0.035 Sum_probs=26.7
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHH
Q 023816 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGR 63 (276)
Q Consensus 32 VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~ 63 (276)
|||||.....-..|.+.|+..|+++..+.+..
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~ 33 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDE 33 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCC
Confidence 89999777777889999999999888877543
No 268
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=42.24 E-value=1.3e+02 Score=26.27 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=32.2
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
+.+.|.+=. ...+...+|+++|++-.+.--++.++++++++.+..
T Consensus 79 ~~~~I~VEv-~~~ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l~~ 123 (169)
T PF01729_consen 79 EKKKIEVEV-ENLEEAEEALEAGADIIMLDNMSPEDLKEAVEELRE 123 (169)
T ss_dssp TTSEEEEEE-SSHHHHHHHHHTT-SEEEEES-CHHHHHHHHHHHHH
T ss_pred CCceEEEEc-CCHHHHHHHHHhCCCEEEecCcCHHHHHHHHHHHhh
Confidence 343243433 346778899999999999999999999999887743
No 269
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=42.17 E-value=98 Score=30.44 Aligned_cols=74 Identities=12% Similarity=0.045 Sum_probs=50.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
.+.++|+|..---....-|.+-|...|++|+++++.-...+..-. -.+....|+|+..|++.|-.-+.+.+-.|
T Consensus 25 ~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~------~~~~~~~fel~~hdv~~pl~~evD~IyhL 98 (350)
T KOG1429|consen 25 SQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENLE------HWIGHPNFELIRHDVVEPLLKEVDQIYHL 98 (350)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhcc------hhccCcceeEEEeechhHHHHHhhhhhhh
Confidence 345899999888888888877777788999998765433222100 01245679999999999955554444333
No 270
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=42.04 E-value=1.4e+02 Score=29.32 Aligned_cols=62 Identities=23% Similarity=0.167 Sum_probs=43.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhC--CC---EEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHH
Q 023816 31 HVLAVDDSFVDRKVIERLLTIS--SC---KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELL 103 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~--g~---~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell 103 (276)
+|+++|=+....++=..++... || +|.. ..+|-..++.+ .+..+|+|++|..=|.+.+..+.
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~-----------~~~~~dVii~dssdpvgpa~~lf 214 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL-----------KENPFDVIITDSSDPVGPACALF 214 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh-----------ccCCceEEEEecCCccchHHHHH
Confidence 4677776666666666666533 33 4433 56888888877 56789999999988888776543
No 271
>PRK05637 anthranilate synthase component II; Provisional
Probab=41.99 E-value=42 Score=30.08 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=27.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCH
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSG 62 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g 62 (276)
-+||+||...-+-..+.++|+..|+.+..+.+.
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~ 34 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNT 34 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCC
Confidence 379999987777788999999999988877653
No 272
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=41.99 E-value=1.6e+02 Score=28.07 Aligned_cols=30 Identities=17% Similarity=0.416 Sum_probs=27.8
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
++|||+=.+-..+++...++|.|+|..|.-
T Consensus 182 ~VPviVDAGiG~pSdAa~aMElG~DaVL~N 211 (262)
T COG2022 182 DVPVIVDAGIGTPSDAAQAMELGADAVLLN 211 (262)
T ss_pred CCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence 799999999999999999999999999874
No 273
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=41.76 E-value=2.8e+02 Score=25.69 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=23.4
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
+.||++=-+-+..+.+.++.+.||+.++.-.
T Consensus 198 ~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 198 AKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 4576653444458899999999999999865
No 274
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=41.60 E-value=1.8e+02 Score=27.76 Aligned_cols=42 Identities=17% Similarity=0.304 Sum_probs=33.2
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe-----CCCCHHHHHHHHH
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV-----KPVKLSDVKRIKD 198 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~-----KPv~~~~L~~~~~ 198 (276)
++|||+=.+=...+++.+|++.|++..+. |--+..++.+...
T Consensus 189 ~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~ 235 (267)
T CHL00162 189 KIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMK 235 (267)
T ss_pred CCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHH
Confidence 69999999999999999999999999864 5556666644433
No 275
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=41.35 E-value=71 Score=31.25 Aligned_cols=67 Identities=22% Similarity=0.365 Sum_probs=49.9
Q ss_pred CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccC
Q 023816 60 DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCF 139 (276)
Q Consensus 60 ~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (276)
.|.+||++.+..+.+ ..-|+|++= |.+.-+++++++|+..|
T Consensus 222 ~n~~eAlre~~~D~~--------EGAD~lMVK---Pal~YLDIi~~~k~~~~---------------------------- 262 (320)
T cd04824 222 GARGLALRAVERDVS--------EGADMIMVK---PGTPYLDIVREAKDKHP---------------------------- 262 (320)
T ss_pred cCHHHHHHHHHhhHH--------hCCCEEEEc---CCchHHHHHHHHHHhcc----------------------------
Confidence 367778877766543 356777654 78888899999998776
Q ss_pred CcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCe
Q 023816 140 PFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAED 182 (276)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d 182 (276)
.+|+.+.--+..-..+..|-+.|.-|
T Consensus 263 -----------------~~PvaaYqVSGEYaMikaAa~~G~iD 288 (320)
T cd04824 263 -----------------DLPLAVYHVSGEYAMLHAAAEAGAFD 288 (320)
T ss_pred -----------------CCCEEEEEccHHHHHHHHHHHcCCCc
Confidence 68988887777777777777777655
No 276
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=41.27 E-value=3.6e+02 Score=26.77 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=34.2
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 29 EVHVLAVDDSFV---DRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 29 ~~~VLIVdD~~~---~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
+.+|.+|.-|.. ....++.+-+..|+.+..+.+..+..+.+. +...+|+||+|-
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~----------~~~~~DlVLIDT 262 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEIT----------QSKDFDLVLVDT 262 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHH----------HhCCCCEEEEcC
Confidence 456777765542 333456666667888877777655444332 234689999997
No 277
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=41.17 E-value=87 Score=30.80 Aligned_cols=55 Identities=27% Similarity=0.259 Sum_probs=40.7
Q ss_pred CCCccEEEEEeCCHHH---HHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 26 DTEEVHVLAVDDSFVD---RKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 26 ~~~~~~VLIVdD~~~~---~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
+.++=+||||-|.+.. .+.++.++++...-.+.++-+.+.+.+. +.+|++|+-|.
T Consensus 177 ~~~gR~VlIva~~~~~~~dLk~lk~fi~ey~pvlIgVdGaAD~l~~~------------GykP~lIvGdp 234 (395)
T COG4825 177 DLRGRHVLIVADEPSFEDDLKSLKPFIKEYQPVLIGVDGAADVLRKA------------GYKPQLIVGDP 234 (395)
T ss_pred hhcccEEEEEeCCCChHhHHHHHHHHHHhhCCEEEEccchHHHHHHc------------CCCcceeecCc
Confidence 3456689999877654 5566777777776677788888888775 56899999773
No 278
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=41.16 E-value=2.6e+02 Score=27.80 Aligned_cols=92 Identities=14% Similarity=0.106 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHhhCCCEEEE--ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCC-----CCCHHHHHHHHHhhC
Q 023816 38 SFVDRKVIERLLTISSCKVTA--VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-----GMTGYELLKKIKVTT 110 (276)
Q Consensus 38 ~~~~~~~L~~~L~~~g~~v~~--a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp-----~~~G~ell~~Ir~~~ 110 (276)
...+.+.++.+-+..+..+.. +.+.++|...+ +..+|.|+++-+=. +...++++.+++...
T Consensus 238 ~~~tW~~i~~lr~~~~~pvivKgV~~~~dA~~a~------------~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~ 305 (383)
T cd03332 238 PSLTWEDLAFLREWTDLPIVLKGILHPDDARRAV------------EAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAV 305 (383)
T ss_pred CCCCHHHHHHHHHhcCCCEEEecCCCHHHHHHHH------------HCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHh
Confidence 345567777777766655554 78888888776 34678877764211 223567777776422
Q ss_pred CCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 111 PFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 111 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
. ..+||++=.+-....++.+|+..||+....
T Consensus 306 ~--------------------------------------------~~~~vi~dGGIr~G~Dv~KALaLGA~~v~i 336 (383)
T cd03332 306 G--------------------------------------------DRLTVLFDSGVRTGADIMKALALGAKAVLI 336 (383)
T ss_pred c--------------------------------------------CCCeEEEeCCcCcHHHHHHHHHcCCCEEEE
Confidence 1 158888888888889999999999998755
No 279
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=40.89 E-value=1.8e+02 Score=27.54 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=25.5
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
+..+|.-|+-...+++.+....|++.||.=
T Consensus 207 ~~~~IsESGI~~~~dv~~l~~~ga~a~LVG 236 (254)
T COG0134 207 DVILISESGISTPEDVRRLAKAGADAFLVG 236 (254)
T ss_pred CcEEEecCCCCCHHHHHHHHHcCCCEEEec
Confidence 466777788788999999999999999974
No 280
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=40.29 E-value=2.2e+02 Score=28.60 Aligned_cols=97 Identities=19% Similarity=0.295 Sum_probs=61.1
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHH----HHH---HHHHh
Q 023816 36 DDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGY----ELL---KKIKV 108 (276)
Q Consensus 36 dD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~----ell---~~Ir~ 108 (276)
-=|...-+.|...|...||+++. .....|+|++.-|-...+.- ..+ +++|+
T Consensus 34 ~~N~~dse~~~~~l~~~G~~~~~----------------------~~~~ADiviiNTC~v~~~a~~k~~~~i~~~~~~k~ 91 (467)
T PRK14329 34 QMNFADSEIVASILQMAGYNTTE----------------------NLEEADLVLVNTCSIRDNAEQKVRKRLEKFNALKK 91 (467)
T ss_pred CCcHHHHHHHHHHHHHCcCEECC----------------------CcccCCEEEEeCcceechHHHHHHHHHHHHHHHHh
Confidence 36778888888898888887653 12247999999887654332 223 44444
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCC-CeEEeCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGA-EDFIVKP 187 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga-~d~l~KP 187 (276)
..| .. .|++++---.....+.++... .|++..+
T Consensus 92 ~~p---------------------------------------------~~-~ivvgGc~a~~~~~~~l~~~~~vD~vv~~ 125 (467)
T PRK14329 92 KNP---------------------------------------------KL-IVGVLGCMAERLKDKLLEEEKIVDLVVGP 125 (467)
T ss_pred hCC---------------------------------------------Cc-EEEEECChhcCcHHHHHhcCCCceEEECC
Confidence 444 44 455555544344455555544 7999998
Q ss_pred CCHHHHHHHHHHH
Q 023816 188 VKLSDVKRIKDYL 200 (276)
Q Consensus 188 v~~~~L~~~~~~l 200 (276)
-....+..++..+
T Consensus 126 e~~~~i~~ll~~~ 138 (467)
T PRK14329 126 DAYLDLPNLIAEV 138 (467)
T ss_pred CCHHHHHHHHHHH
Confidence 7777776665554
No 281
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=40.09 E-value=2.9e+02 Score=25.22 Aligned_cols=99 Identities=15% Similarity=0.225 Sum_probs=62.9
Q ss_pred HHHHHHHHhhCCCEEEE--ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCC-----CCCHHHHHHHHHhhCCCCc
Q 023816 42 RKVIERLLTISSCKVTA--VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-----GMTGYELLKKIKVTTPFNF 114 (276)
Q Consensus 42 ~~~L~~~L~~~g~~v~~--a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp-----~~~G~ell~~Ir~~~p~~~ 114 (276)
...+-+.|+..||++.. +.+|-..+..+ ....||.|=+|-.+- ......+++.|-....
T Consensus 138 ~~~~l~~L~~~G~~ialDDFGtG~ssl~~L-----------~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~--- 203 (256)
T COG2200 138 ALALLRQLRELGVRIALDDFGTGYSSLSYL-----------KRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAH--- 203 (256)
T ss_pred HHHHHHHHHHCCCeEEEECCCCCHHHHHHH-----------hhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHH---
Confidence 34445566788998877 88888889988 678899998887432 1222334444432111
Q ss_pred ccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCC----eEEeCCCCH
Q 023816 115 LYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAE----DFIVKPVKL 190 (276)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~----d~l~KPv~~ 190 (276)
.-.+.+|+ -+=...+....+.+.|++ .|+.||...
T Consensus 204 ----------------------------------------~l~~~vva-EGVEt~~ql~~L~~~G~~~~QGylf~~P~~~ 242 (256)
T COG2200 204 ----------------------------------------KLGLTVVA-EGVETEEQLDLLRELGCDYLQGYLFSRPLPA 242 (256)
T ss_pred ----------------------------------------HCCCEEEE-eecCCHHHHHHHHHcCCCeEeeccccCCCCH
Confidence 01344443 334556677778899987 468889988
Q ss_pred HHHHH
Q 023816 191 SDVKR 195 (276)
Q Consensus 191 ~~L~~ 195 (276)
+++..
T Consensus 243 ~~~~~ 247 (256)
T COG2200 243 DALDA 247 (256)
T ss_pred HHHHH
Confidence 66643
No 282
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=39.95 E-value=2e+02 Score=26.93 Aligned_cols=28 Identities=14% Similarity=0.075 Sum_probs=24.9
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
++|||...+=...+++.+++.+||+...
T Consensus 252 ~ipIig~GGI~~~~da~~~l~aGA~~V~ 279 (299)
T cd02940 252 GLPISGIGGIESWEDAAEFLLLGASVVQ 279 (299)
T ss_pred CCcEEEECCCCCHHHHHHHHHcCCChhe
Confidence 5899999999999999999999998654
No 283
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=39.94 E-value=1.9e+02 Score=27.83 Aligned_cols=63 Identities=19% Similarity=0.193 Sum_probs=42.7
Q ss_pred EEEEEeCCHHH----HHHHHHHHhhCCCEEEEEC---------CHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC
Q 023816 31 HVLAVDDSFVD----RKVIERLLTISSCKVTAVD---------SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM 97 (276)
Q Consensus 31 ~VLIVdD~~~~----~~~L~~~L~~~g~~v~~a~---------~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~ 97 (276)
|+|||-|.... .+.+.+.|+..|+++..++ +.+++++.+ +..++|+||- ..|.
T Consensus 25 r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~-----------~~~~~D~IIa---iGGG 90 (375)
T cd08194 25 RPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLA-----------KEGGCDVIIA---LGGG 90 (375)
T ss_pred eEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHH-----------HhcCCCEEEE---eCCc
Confidence 79999876543 3557788888888776553 234455555 5668898872 4567
Q ss_pred CHHHHHHHHH
Q 023816 98 TGYELLKKIK 107 (276)
Q Consensus 98 ~G~ell~~Ir 107 (276)
+-+++.|.+.
T Consensus 91 S~~D~AKaia 100 (375)
T cd08194 91 SPIDTAKAIA 100 (375)
T ss_pred hHHHHHHHHH
Confidence 7777777775
No 284
>PRK10060 RNase II stability modulator; Provisional
Probab=39.68 E-value=2.8e+02 Score=28.77 Aligned_cols=103 Identities=14% Similarity=0.146 Sum_probs=64.6
Q ss_pred HHHHHHHhhCCCEEEE--ECCHHHHHHHhcccccccccCCCCCceeEEEEecCC----C-CCCHHHHHHHHHhhCCCCcc
Q 023816 43 KVIERLLTISSCKVTA--VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM----P-GMTGYELLKKIKVTTPFNFL 115 (276)
Q Consensus 43 ~~L~~~L~~~g~~v~~--a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~m----p-~~~G~ell~~Ir~~~p~~~~ 115 (276)
..+-..|+..||++.. +.+|-..+..+ ....+|.|=+|-.. . +.....+++.|-....
T Consensus 544 ~~~l~~L~~~G~~ialDdfGtg~ssl~~L-----------~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~---- 608 (663)
T PRK10060 544 LSVIQQFSQLGAQVHLDDFGTGYSSLSQL-----------ARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQ---- 608 (663)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHH-----------HhCCCCEEEECHHHHhccccCcchHHHHHHHHHHHH----
Confidence 3344566788888877 66777777777 56678888888522 2 1233444444432111
Q ss_pred cchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCC----eEEeCCCCHH
Q 023816 116 YSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAE----DFIVKPVKLS 191 (276)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~----d~l~KPv~~~ 191 (276)
.-++.+| ..+=...+....+.+.|++ .|+-||+..+
T Consensus 609 ---------------------------------------~lg~~vi-AeGVEt~~q~~~l~~~G~d~~QGy~~~~P~~~~ 648 (663)
T PRK10060 609 ---------------------------------------ALNLQVI-AEGVETAKEDAFLTKNGVNERQGFLFAKPMPAV 648 (663)
T ss_pred ---------------------------------------HCCCcEE-EecCCCHHHHHHHHHcCCCEEecCccCCCCCHH
Confidence 0134444 4555667777788899985 4588999999
Q ss_pred HHHHHHHHH
Q 023816 192 DVKRIKDYL 200 (276)
Q Consensus 192 ~L~~~~~~l 200 (276)
++.+.+..+
T Consensus 649 ~~~~~l~~~ 657 (663)
T PRK10060 649 AFERWYKRY 657 (663)
T ss_pred HHHHHHHhh
Confidence 986665443
No 285
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=39.67 E-value=1.2e+02 Score=27.48 Aligned_cols=58 Identities=16% Similarity=0.089 Sum_probs=42.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCC--EEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecC
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC 93 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~--~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~ 93 (276)
.-+|.-+|=++...+..++.++..|+ ++.. ..+..+.+..+.... ....||+|++|..
T Consensus 93 ~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~-------~~~~fD~VfiDa~ 153 (234)
T PLN02781 93 DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNND-------PKPEFDFAFVDAD 153 (234)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCC-------CCCCCCEEEECCC
Confidence 34899999999999999999998886 3443 567777776652110 1347999999964
No 286
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=39.53 E-value=2.5e+02 Score=26.04 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=23.5
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeE
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDF 183 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~ 183 (276)
++||+..-+-.+.+++.+++++||+-.
T Consensus 234 ~ipvi~~GGI~~~~da~~~l~aGAd~V 260 (301)
T PRK07259 234 DIPIIGMGGISSAEDAIEFIMAGASAV 260 (301)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCce
Confidence 689999888889999999999998543
No 287
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=39.04 E-value=47 Score=28.84 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=25.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECC
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDS 61 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~ 61 (276)
+||||||.....-..+.++|++.|+++..+..
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~ 33 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNV 33 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEEC
Confidence 68999996666556699999999988777653
No 288
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=39.03 E-value=1.9e+02 Score=27.75 Aligned_cols=107 Identities=24% Similarity=0.258 Sum_probs=63.9
Q ss_pred eeccccCCCCCCCCCCCCccEEEEEeCCHHHHHHHHHHHh----hCCC--EEEE-ECCHHHHHHHhcccccccccCCCCC
Q 023816 11 RLISDEIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLT----ISSC--KVTA-VDSGRRALQFLGLDEEQSINGFDGL 83 (276)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~VLIVdD~~~~~~~L~~~L~----~~g~--~v~~-a~~g~~al~~l~~~~~~~~~~~~~~ 83 (276)
|.=|-..+.+.++- -|||=|++......+++.++ ..+| ++.. +++.+++.+.+ +.
T Consensus 146 ~~GGG~nHR~gLsD------avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl------------~a 207 (280)
T COG0157 146 RAGGGDNHRFGLSD------AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEAL------------EA 207 (280)
T ss_pred HhcCCccccCCCcc------eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHH------------Hc
Confidence 33344455554432 25665555554444665554 3455 2343 89999998887 34
Q ss_pred ceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEE
Q 023816 84 KVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIM 163 (276)
Q Consensus 84 ~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~l 163 (276)
++|+|++|- |+--++-+.++... ...-.++-.
T Consensus 208 gaDiImLDN----m~~e~~~~av~~l~--------------------------------------------~~~~~~lEa 239 (280)
T COG0157 208 GADIIMLDN----MSPEELKEAVKLLG--------------------------------------------LAGRALLEA 239 (280)
T ss_pred CCCEEEecC----CCHHHHHHHHHHhc--------------------------------------------cCCceEEEE
Confidence 799999994 33333333333200 113466677
Q ss_pred ecCCCHHHHHHHHhcCCCeE
Q 023816 164 SSENILARIDRCLEDGAEDF 183 (276)
Q Consensus 164 s~~~~~~~~~~al~~Ga~d~ 183 (276)
|+.-..+.+.+..+.|+|-+
T Consensus 240 SGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 240 SGGITLENIREYAETGVDVI 259 (280)
T ss_pred eCCCCHHHHHHHhhcCCCEE
Confidence 88888888888888888644
No 289
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=39.01 E-value=75 Score=29.03 Aligned_cols=41 Identities=15% Similarity=0.197 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 41 DRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 41 ~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
.-+.+.+.|++.|+++..+....+.++.+ ....+|+|+.=+
T Consensus 24 s~~~i~~al~~~g~~v~~i~~~~~~~~~~-----------~~~~~D~v~~~~ 64 (304)
T PRK01372 24 SGAAVLAALREAGYDAHPIDPGEDIAAQL-----------KELGFDRVFNAL 64 (304)
T ss_pred hHHHHHHHHHHCCCEEEEEecCcchHHHh-----------ccCCCCEEEEec
Confidence 44678888899999999886656666666 455799998653
No 290
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=38.79 E-value=1.6e+02 Score=28.29 Aligned_cols=58 Identities=22% Similarity=0.276 Sum_probs=40.1
Q ss_pred CCceeEEEEecCCCC-CCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeE
Q 023816 82 GLKVDLIITDYCMPG-MTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPV 160 (276)
Q Consensus 82 ~~~~DlIL~D~~mp~-~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipi 160 (276)
+..+|+|.+|..-.. ..-.+++++||+..| +++|
T Consensus 104 eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p---------------------------------------------~v~V 138 (325)
T cd00381 104 EAGVDVIVIDSAHGHSVYVIEMIKFIKKKYP---------------------------------------------NVDV 138 (325)
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHHHHHHCC---------------------------------------------CceE
Confidence 346899999874322 235688889987554 5777
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 161 VIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 161 V~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++ -.-...+....++++||+-...
T Consensus 139 i~-G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 139 IA-GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred EE-CCCCCHHHHHHHHhcCCCEEEE
Confidence 65 3335567788899999986653
No 291
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=38.76 E-value=61 Score=30.93 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=38.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-------CHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVD-------SGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~-------~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
|+|||..++-..-..|.+.|. .+++|.+.+ +.....+.+ ++.+||+||-=.
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i-----------~~~~PDvVIn~A 58 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVI-----------RETRPDVVINAA 58 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCccccccChHHHHHHH-----------HhhCCCEEEECc
Confidence 459999999999999999998 667887643 445555555 667899999433
No 292
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=38.54 E-value=1.7e+02 Score=22.97 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=37.4
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccc----------cccccCCCCCceeEEEEecC--CCCCCHHHHH
Q 023816 36 DDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDE----------EQSINGFDGLKVDLIITDYC--MPGMTGYELL 103 (276)
Q Consensus 36 dD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~----------~~~~~~~~~~~~DlIL~D~~--mp~~~G~ell 103 (276)
|.+......+.+.|...||++.+.....+.++..+... .+..+.+++.++|+|+.-.. ....+|+.+.
T Consensus 9 ~~~k~~~~~~~~~l~~~G~~l~aT~gT~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~vIn~~~~~~~~~~~~~iR 88 (110)
T cd01424 9 DRDKPEAVEIAKRLAELGFKLVATEGTAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPSGKRAIRDGFSIR 88 (110)
T ss_pred cCcHhHHHHHHHHHHHCCCEEEEchHHHHHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEEEEECCCCCccCccHHHHH
Confidence 33444444556666778998877655555555443321 11111224678999987432 1233576444
Q ss_pred HHH
Q 023816 104 KKI 106 (276)
Q Consensus 104 ~~I 106 (276)
+.-
T Consensus 89 R~A 91 (110)
T cd01424 89 RAA 91 (110)
T ss_pred HHH
Confidence 433
No 293
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=38.25 E-value=1.7e+02 Score=26.67 Aligned_cols=77 Identities=22% Similarity=0.173 Sum_probs=45.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCC---EEEE--EC---CHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHH
Q 023816 31 HVLAVDDSFVDRKVIERLLTISSC---KVTA--VD---SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYEL 102 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g~---~v~~--a~---~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~el 102 (276)
+|.++-++......++++++..+. .+.. .. +.+..++.+ +..++|+|++... ..++..+
T Consensus 131 ~vavl~~~~~~~~~l~~~~~~~~~~g~~v~~~~~~~~~d~~~~l~~i-----------~~~~~d~vv~~~~--~~~~~~~ 197 (327)
T cd06382 131 SFTIIYESAEGLLRLQELLQAFGISGITITVRQLDDDLDYRPLLKEI-----------KNSGDNRIIIDCS--ADILIEL 197 (327)
T ss_pred EEEEEecChHHHHHHHHHHHhhccCCCeEEEEEccCCccHHHHHHHH-----------HhcCceEEEEECC--HHHHHHH
Confidence 455554444466677788876653 2322 22 456667776 5667899987543 4557778
Q ss_pred HHHHHhhCCCCcccchhe
Q 023816 103 LKKIKVTTPFNFLYSTII 120 (276)
Q Consensus 103 l~~Ir~~~p~~~~~~~~~ 120 (276)
++.+++..-..-.|.+|.
T Consensus 198 ~~qa~~~g~~~~~~~~i~ 215 (327)
T cd06382 198 LKQAQQVGMMSEYYHYII 215 (327)
T ss_pred HHHHHHhCccccceEEEE
Confidence 888777544333344443
No 294
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=38.02 E-value=3e+02 Score=25.06 Aligned_cols=48 Identities=8% Similarity=0.198 Sum_probs=33.9
Q ss_pred ccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 023816 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 152 ~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~~ 203 (276)
+.....+|||...... ..+.+..|-.+++..|-+.+++.+.+..+...
T Consensus 279 Eama~G~Pvi~~~~~~----~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 279 EAMASGTPVIAYGKGG----ALETVIDGVTGILFEEQTVESLAAAVERFEKN 326 (351)
T ss_pred HHHHcCCCEEEeCCCC----CcceeeCCCCEEEeCCCCHHHHHHHHHHHHhC
Confidence 4455588998754333 23445677789999999999998777776654
No 295
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=37.89 E-value=2.4e+02 Score=27.18 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=19.5
Q ss_pred eEEEEecCCCHHHHHHHHhcCCCeE
Q 023816 159 PVVIMSSENILARIDRCLEDGAEDF 183 (276)
Q Consensus 159 piV~ls~~~~~~~~~~al~~Ga~d~ 183 (276)
..+..|+.-..+.+.+..+.|+|-+
T Consensus 253 ~~ieaSGGI~~~ni~~yA~tGVD~I 277 (296)
T PRK09016 253 ALLEVSGNVTLETLREFAETGVDFI 277 (296)
T ss_pred eEEEEECCCCHHHHHHHHhcCCCEE
Confidence 4567787788888888889998644
No 296
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=37.67 E-value=2.6e+02 Score=23.88 Aligned_cols=28 Identities=14% Similarity=0.092 Sum_probs=20.1
Q ss_pred CeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 158 IPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 158 ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
+||+ +.+.-..+.+.++++.|++.++.-
T Consensus 166 ~~i~-v~GGI~~env~~l~~~gad~iivg 193 (210)
T TIGR01163 166 ILIE-VDGGVNDDNARELAEAGADILVAG 193 (210)
T ss_pred ceEE-EECCcCHHHHHHHHHcCCCEEEEC
Confidence 4554 444556788889999999988764
No 297
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=37.54 E-value=63 Score=31.31 Aligned_cols=54 Identities=28% Similarity=0.228 Sum_probs=38.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEE--EEECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKV--TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v--~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
...|..+|-+..-.+.|.+.|+++|+.. ....+++...+.+. .+..||.||+|-
T Consensus 182 ~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~----------~~~~fD~iLlDa 237 (355)
T COG0144 182 GAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLP----------GGEKFDRILLDA 237 (355)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccc----------ccCcCcEEEECC
Confidence 3457999999999999999999999873 33444443333331 233699999996
No 298
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=37.42 E-value=1.2e+02 Score=30.02 Aligned_cols=54 Identities=20% Similarity=0.212 Sum_probs=39.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCE---EE-EECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCK---VT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~---v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
-+|..||=++...+..++-++..|+. +. ...+..+.++.+.. .+..||+|++|-
T Consensus 244 ~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~---------~~~~fDlVilDP 301 (396)
T PRK15128 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD---------RGEKFDVIVMDP 301 (396)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh---------cCCCCCEEEECC
Confidence 48999999999999999999888763 33 35666666655411 234799999994
No 299
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=37.41 E-value=3.8e+02 Score=25.67 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=23.9
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+|||+--+-....++.+|+..||+....
T Consensus 197 ~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 197 GVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred CCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 58888666667789999999999988766
No 300
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=37.23 E-value=1.3e+02 Score=30.73 Aligned_cols=57 Identities=18% Similarity=0.227 Sum_probs=42.8
Q ss_pred CCceeEEEEecCCCC-CCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeE
Q 023816 82 GLKVDLIITDYCMPG-MTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPV 160 (276)
Q Consensus 82 ~~~~DlIL~D~~mp~-~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipi 160 (276)
+...|.|.+|.--+. ..-.+++++||..+| ++||
T Consensus 235 ~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~---------------------------------------------~~~v 269 (475)
T TIGR01303 235 DAGVDVLVIDTAHGHQVKMISAIKAVRALDL---------------------------------------------GVPI 269 (475)
T ss_pred HhCCCEEEEeCCCCCcHHHHHHHHHHHHHCC---------------------------------------------CCeE
Confidence 456899999997643 345679999998777 7887
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEE
Q 023816 161 VIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 161 V~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
|+ -.-...+....++++||+..-
T Consensus 270 i~-g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 270 VA-GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred EE-eccCCHHHHHHHHHhCCCEEE
Confidence 76 224567788889999997654
No 301
>PRK08185 hypothetical protein; Provisional
Probab=37.07 E-value=1.4e+02 Score=28.52 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=20.3
Q ss_pred CCeEEEEecCCC-HHHHHHHHhcCCCeE
Q 023816 157 EIPVVIMSSENI-LARIDRCLEDGAEDF 183 (276)
Q Consensus 157 ~ipiV~ls~~~~-~~~~~~al~~Ga~d~ 183 (276)
++|+|+.-++.. .+..++|.+.|+.-+
T Consensus 198 ~iPLVlHGgsg~~~e~~~~ai~~GI~Ki 225 (283)
T PRK08185 198 DIPLVLHGGSANPDAEIAESVQLGVGKI 225 (283)
T ss_pred CCCEEEECCCCCCHHHHHHHHHCCCeEE
Confidence 589988866644 567888999997654
No 302
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=36.77 E-value=3.5e+02 Score=25.17 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=33.5
Q ss_pred cccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 151 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 151 ~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
-+.....+|||+..... ..+.+..|..+++..|-+.+++.+.+.++..
T Consensus 320 lEAma~G~Pvi~~~~~~----~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 320 MEAQACGTPVVAARVGG----LPVAVADGETGLLVDGHDPADWADALARLLD 367 (405)
T ss_pred HHHHHcCCCEEEecCCC----cHhhhccCCceEECCCCCHHHHHHHHHHHHh
Confidence 34445578998754333 3345677888999999999999777766654
No 303
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=36.71 E-value=1.5e+02 Score=29.08 Aligned_cols=73 Identities=18% Similarity=0.099 Sum_probs=49.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEE--EEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH-H
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKV--TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK-I 106 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v--~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~-I 106 (276)
-+|..+|=++...+.+++-++..+.+- ....+..+.+.. ...||+|++|- |+ .+.+++.. |
T Consensus 82 ~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-------------~~~fD~V~lDP--~G-s~~~~l~~al 145 (382)
T PRK04338 82 EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-------------ERKFDVVDIDP--FG-SPAPFLDSAI 145 (382)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-------------cCCCCEEEECC--CC-CcHHHHHHHH
Confidence 369999999999999999988777642 234444333321 23599999995 54 34567666 7
Q ss_pred HhhCCCCcccch
Q 023816 107 KVTTPFNFLYST 118 (276)
Q Consensus 107 r~~~p~~~~~~~ 118 (276)
+...+-..||-+
T Consensus 146 ~~~~~~gilyvS 157 (382)
T PRK04338 146 RSVKRGGLLCVT 157 (382)
T ss_pred HHhcCCCEEEEE
Confidence 776666666655
No 304
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=36.69 E-value=1.1e+02 Score=29.45 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=45.1
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHhhCCCEEEEEC---------CHHHHHHHhcccccccccCCCCCceeEEEEecCCC
Q 023816 30 VHVLAVDDSFV-----DRKVIERLLTISSCKVTAVD---------SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (276)
Q Consensus 30 ~~VLIVdD~~~-----~~~~L~~~L~~~g~~v~~a~---------~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp 95 (276)
-|||||-|... ..+.+.+.|+..|+++..++ +.+++++.+ ++.++|+|| -..
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~-----------~~~~~D~Ii---avG 91 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALA-----------REEGCDFVV---GLG 91 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHH-----------HHcCCCEEE---EeC
Confidence 38999988765 33567778888888776543 334555555 566899988 345
Q ss_pred CCCHHHHHHHHHh
Q 023816 96 GMTGYELLKKIKV 108 (276)
Q Consensus 96 ~~~G~ell~~Ir~ 108 (276)
|.+-++..|.+..
T Consensus 92 GGS~iD~aK~ia~ 104 (380)
T cd08185 92 GGSSMDTAKAIAF 104 (380)
T ss_pred CccHHHHHHHHHH
Confidence 7778888888764
No 305
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=36.46 E-value=3.3e+02 Score=24.74 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=24.5
Q ss_pred CCeEEEEecCCCHHHHHHHHhcC-CCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDG-AEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~G-a~d~l~ 185 (276)
++||++.-+-...+++.++++.| ++..+.
T Consensus 199 ~ipvia~GGi~s~~di~~~~~~g~~dgv~~ 228 (254)
T TIGR00735 199 KIPVIASGGAGKPEHFYEAFTKGKADAALA 228 (254)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCcceeeE
Confidence 58999888889999999999988 888544
No 306
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.46 E-value=3e+02 Score=24.16 Aligned_cols=54 Identities=13% Similarity=0.070 Sum_probs=34.2
Q ss_pred HHhhCC-CEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCC
Q 023816 48 LLTISS-CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTP 111 (276)
Q Consensus 48 ~L~~~g-~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p 111 (276)
.|...+ +-|....+.+++++.+.... ...+. ++-+.+...+..++++.+++..+
T Consensus 8 ~l~~~~~~~v~r~~~~~~~~~~~~~~~--------~~Gv~--~vqlr~k~~~~~e~~~~~~~~~~ 62 (187)
T PRK07455 8 QLQQHRAIAVIRAPDLELGLQMAEAVA--------AGGMR--LIEITWNSDQPAELISQLREKLP 62 (187)
T ss_pred HHHhCCEEEEEEcCCHHHHHHHHHHHH--------HCCCC--EEEEeCCCCCHHHHHHHHHHhCC
Confidence 334444 35666888888888774321 12233 44555667788999999987655
No 307
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=36.30 E-value=1.3e+02 Score=28.75 Aligned_cols=53 Identities=23% Similarity=0.157 Sum_probs=34.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCE---EE-EECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCK---VT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~---v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
-+|.-||-+....+..++-++..|+. +. ...+.-+.++.+. ++.+||+||+|-
T Consensus 147 ~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~----------~~~~fD~IIlDP 203 (286)
T PF10672_consen 147 KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK----------KGGRFDLIILDP 203 (286)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH----------HTT-EEEEEE--
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh----------cCCCCCEEEECC
Confidence 46899999999999999998877753 22 3566655555542 345899999995
No 308
>PLN02591 tryptophan synthase
Probab=36.25 E-value=3.6e+02 Score=25.10 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=27.9
Q ss_pred CCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 156 REIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 156 ~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
.++||++=.+=...+.+.++.+.|||+.++-.
T Consensus 188 ~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 188 TDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred CCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 47899987777788999999999999999976
No 309
>PRK14098 glycogen synthase; Provisional
Probab=36.09 E-value=4.6e+02 Score=26.30 Aligned_cols=53 Identities=15% Similarity=0.058 Sum_probs=32.2
Q ss_pred ccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHH
Q 023816 148 LEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 200 (276)
Q Consensus 148 ~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l 200 (276)
+.+-++....+|+|+.......+.+.+..+.|.++|+.+|.+.+++...+.++
T Consensus 396 l~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~ 448 (489)
T PRK14098 396 MLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEA 448 (489)
T ss_pred HHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHH
Confidence 33344445566666554434433333333347789999999999986666554
No 310
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=36.01 E-value=1.8e+02 Score=27.34 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=31.5
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 023816 160 VVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 201 (276)
Q Consensus 160 iV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~ 201 (276)
+|.++.++ .+...+|.+.|++-...-|+...++++.+..+.
T Consensus 185 ~IgVev~t-~eea~~A~~~gaD~I~ld~~~p~~l~~~~~~~~ 225 (272)
T cd01573 185 KIVVEVDS-LEEALAAAEAGADILQLDKFSPEELAELVPKLR 225 (272)
T ss_pred eEEEEcCC-HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Confidence 45666654 466778899999988889999999877776654
No 311
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=35.93 E-value=1.4e+02 Score=26.56 Aligned_cols=65 Identities=11% Similarity=0.053 Sum_probs=42.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCE-EEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCH--HHHHHH
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCK-VTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG--YELLKK 105 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~-v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G--~ell~~ 105 (276)
.+|..||-++...+.+++-++..|+. +.. ..+..+.+.. ....||+|++|- |=..| .++++.
T Consensus 77 ~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~------------~~~~fDlV~~DP--Py~~g~~~~~l~~ 142 (199)
T PRK10909 77 AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ------------PGTPHNVVFVDP--PFRKGLLEETINL 142 (199)
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh------------cCCCceEEEECC--CCCCChHHHHHHH
Confidence 47899999999999999988887752 332 3444443321 123599999994 42334 346666
Q ss_pred HHh
Q 023816 106 IKV 108 (276)
Q Consensus 106 Ir~ 108 (276)
|..
T Consensus 143 l~~ 145 (199)
T PRK10909 143 LED 145 (199)
T ss_pred HHH
Confidence 664
No 312
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=35.88 E-value=1.2e+02 Score=29.38 Aligned_cols=77 Identities=18% Similarity=0.096 Sum_probs=43.4
Q ss_pred ceeeeccccCCCCCCCCCCCCccE--EEEEeCCH-------HHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhcccccc
Q 023816 8 ASLRLISDEIDGFDLSPSDTEEVH--VLAVDDSF-------VDRKVIERLLTISSCKVTA---VDSGRRALQFLGLDEEQ 75 (276)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~--VLIVdD~~-------~~~~~L~~~L~~~g~~v~~---a~~g~~al~~l~~~~~~ 75 (276)
-.+||+......-.---...+.++ ||++.|.. .+...|..+|++.|+++.. +.+..+.++..-.+.
T Consensus 134 ~~~~l~~k~ggksg~~~~~~~~~~~aIltvsde~~~G~i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a-- 211 (312)
T PRK03604 134 GGIRLLEKTGGKSGHKRRFRPRTSAAVLVLSDSIAAGTKEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAW-- 211 (312)
T ss_pred EeEEEEEeeCCCCCcccccCCccEEEEEEECCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHh--
Confidence 346776554433211111233345 88888843 4666899999999998765 344444333321110
Q ss_pred cccCCCCCceeEEEEe
Q 023816 76 SINGFDGLKVDLIITD 91 (276)
Q Consensus 76 ~~~~~~~~~~DlIL~D 91 (276)
....+|+||+-
T Consensus 212 -----~~~~~DlIITT 222 (312)
T PRK03604 212 -----IAEGYALIITT 222 (312)
T ss_pred -----hhCCCCEEEEC
Confidence 12358999965
No 313
>PRK10537 voltage-gated potassium channel; Provisional
Probab=35.85 E-value=3.8e+02 Score=26.58 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=23.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECC
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDS 61 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~ 61 (276)
+-||+|+.-+..-+.++++ |+..|++++.++.
T Consensus 240 k~HvII~G~g~lg~~v~~~-L~~~g~~vvVId~ 271 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLG-LRQRGQAVTVIVP 271 (393)
T ss_pred CCeEEEECCChHHHHHHHH-HHHCCCCEEEEEC
Confidence 4689999998887777665 4566777766543
No 314
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=35.80 E-value=2.5e+02 Score=24.01 Aligned_cols=68 Identities=22% Similarity=0.251 Sum_probs=45.0
Q ss_pred EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC-------CHHHHHHHHHhhCCCCcccchheehhhhhhhhh
Q 023816 58 AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM-------TGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFL 130 (276)
Q Consensus 58 ~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~-------~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~ 130 (276)
.+.+.+|+.+.. ...+|.|++.-.-|.. -|++.++++++..
T Consensus 101 S~h~~~e~~~a~------------~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~-------------------- 148 (180)
T PF02581_consen 101 SCHSLEEAREAE------------ELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS-------------------- 148 (180)
T ss_dssp EESSHHHHHHHH------------HCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT--------------------
T ss_pred ecCcHHHHHHhh------------hcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC--------------------
Confidence 477777754433 3457888887755433 3888888888654
Q ss_pred hhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 131 FILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
++||+++-+= +.+.+.++++.|++++-
T Consensus 149 --------------------------~~pv~AlGGI-~~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 149 --------------------------PIPVYALGGI-TPENIPELREAGADGVA 175 (180)
T ss_dssp --------------------------SSCEEEESS---TTTHHHHHHTT-SEEE
T ss_pred --------------------------CCCEEEEcCC-CHHHHHHHHHcCCCEEE
Confidence 3899988765 45667789999998763
No 315
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=35.65 E-value=2.1e+02 Score=25.04 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=19.7
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeE
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDF 183 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~ 183 (276)
++|++. ++.-..+.+.+.+++|++.+
T Consensus 152 ~ipvva-iGGI~~~n~~~~l~aGa~~v 177 (187)
T PRK07455 152 HIPLIP-TGGVTLENAQAFIQAGAIAV 177 (187)
T ss_pred CCcEEE-eCCCCHHHHHHHHHCCCeEE
Confidence 578654 55567788899999999765
No 316
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=35.40 E-value=2.4e+02 Score=22.83 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=23.8
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+||++..+-...+...++++.||+.+..
T Consensus 170 ~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 170 KVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 68988877777778899999999987753
No 317
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=35.39 E-value=2.9e+02 Score=23.68 Aligned_cols=44 Identities=23% Similarity=0.285 Sum_probs=29.6
Q ss_pred CCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 155 LREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 155 ~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
...+|||+..... ..+.++.|-.+++..+.+.+++.+.+..+..
T Consensus 297 ~~g~pvI~~~~~~----~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 340 (374)
T cd03801 297 AAGLPVVASDVGG----IPEVVEDGETGLLVPPGDPEALAEAILRLLD 340 (374)
T ss_pred HcCCcEEEeCCCC----hhHHhcCCcceEEeCCCCHHHHHHHHHHHHc
Confidence 3468877544332 3344555788999999988888777776643
No 318
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=34.92 E-value=1.7e+02 Score=26.61 Aligned_cols=45 Identities=11% Similarity=0.383 Sum_probs=28.4
Q ss_pred CCeEEEEe-----cCCCHHHHHHHHhcCCCeEEeC--CCC-HHHHHHHHHHHH
Q 023816 157 EIPVVIMS-----SENILARIDRCLEDGAEDFIVK--PVK-LSDVKRIKDYLT 201 (276)
Q Consensus 157 ~ipiV~ls-----~~~~~~~~~~al~~Ga~d~l~K--Pv~-~~~L~~~~~~l~ 201 (276)
.+|+++|+ ..+....+..+.+.|++.++.. |+. .+++.+.+..+.
T Consensus 74 ~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~ 126 (244)
T PRK13125 74 SVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIK 126 (244)
T ss_pred CCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHH
Confidence 56877664 3344455778899999999986 333 345555554443
No 319
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=34.86 E-value=91 Score=27.55 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhCCCEEEEECC---HH----HHHHHhcccccccccCCCCCceeEEEEecCCCCCCH--HHHHHHHHh
Q 023816 40 VDRKVIERLLTISSCKVTAVDS---GR----RALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG--YELLKKIKV 108 (276)
Q Consensus 40 ~~~~~L~~~L~~~g~~v~~a~~---g~----~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G--~ell~~Ir~ 108 (276)
--.+.|+.+-+..|+.+..+.+ .. ++++.. ...++|+||+|. |+++- .+.++++++
T Consensus 43 ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~-----------~~~~~D~vlIDT--~Gr~~~d~~~~~el~~ 107 (196)
T PF00448_consen 43 GAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF-----------RKKGYDLVLIDT--AGRSPRDEELLEELKK 107 (196)
T ss_dssp HHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH-----------HHTTSSEEEEEE---SSSSTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH-----------hhcCCCEEEEec--CCcchhhHHHHHHHHH
Confidence 4567788888889988887653 22 334433 345699999998 55543 345666654
No 320
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=34.83 E-value=3.3e+02 Score=24.17 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=24.7
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++||++--+-...+++.++.+.||+..+.
T Consensus 193 ~iPvia~GGI~~~~di~~~~~~Ga~gv~v 221 (241)
T PRK13585 193 DIPVIASGGVTTLDDLRALKEAGAAGVVV 221 (241)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 58988888888888999999999998765
No 321
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=34.75 E-value=3.1e+02 Score=23.92 Aligned_cols=44 Identities=7% Similarity=0.022 Sum_probs=33.2
Q ss_pred CCCCCCCCCCCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC
Q 023816 17 IDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVD 60 (276)
Q Consensus 17 ~~~~~~~~~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~ 60 (276)
++-|-|...+...-+|||..-....-..+.+.|...|++|..+.
T Consensus 3 ~~~~~~~~~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~ 46 (258)
T PRK06935 3 LDKFSMDFFSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITT 46 (258)
T ss_pred hhhhccccccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 34455554555667899999888888888888888999988754
No 322
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=34.59 E-value=3.9e+02 Score=25.56 Aligned_cols=52 Identities=17% Similarity=0.106 Sum_probs=27.4
Q ss_pred cEEEEEeCCHHHH---HHHHHHHhhCCCEEEEEC---CH----HHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 30 VHVLAVDDSFVDR---KVIERLLTISSCKVTAVD---SG----RRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 30 ~~VLIVdD~~~~~---~~L~~~L~~~g~~v~~a~---~g----~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
-+|++++-|..-. +.+...-.+.++.+.... +. .+++... ....+|+||+|.
T Consensus 143 ~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~-----------~~~~~D~ViIDT 204 (318)
T PRK10416 143 KKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA-----------KARGIDVLIIDT 204 (318)
T ss_pred CeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH-----------HhCCCCEEEEeC
Confidence 4677776554221 233444445566555432 11 1233322 345799999997
No 323
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=34.56 E-value=2.3e+02 Score=22.44 Aligned_cols=69 Identities=17% Similarity=0.122 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccc-----------cccccCCCC-CceeEEEE--ecCC---CCCCHHHH
Q 023816 40 VDRKVIERLLTISSCKVTAVDSGRRALQFLGLDE-----------EQSINGFDG-LKVDLIIT--DYCM---PGMTGYEL 102 (276)
Q Consensus 40 ~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~-----------~~~~~~~~~-~~~DlIL~--D~~m---p~~~G~el 102 (276)
.....+.+.|...||++.+-....+.|+..+... .+..+.+.+ .++|+||. |-.. ...+|+.+
T Consensus 12 ~~~~~~a~~l~~~G~~i~AT~gTa~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~i 91 (112)
T cd00532 12 AMLVDLAPKLSSDGFPLFATGGTSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTAL 91 (112)
T ss_pred HHHHHHHHHHHHCCCEEEECcHHHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHH
Confidence 3344455566678998876655555666544321 112333456 89999986 3222 34567765
Q ss_pred HHHHHh
Q 023816 103 LKKIKV 108 (276)
Q Consensus 103 l~~Ir~ 108 (276)
.+.-..
T Consensus 92 RR~A~~ 97 (112)
T cd00532 92 LRLARL 97 (112)
T ss_pred HHHHHH
Confidence 555443
No 324
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=34.56 E-value=3.6e+02 Score=25.27 Aligned_cols=28 Identities=7% Similarity=0.109 Sum_probs=20.5
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++|++ .++.-..+.+.+..+.|++.+..
T Consensus 230 ~i~i~-AsGGI~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 230 PVLLA-AAGGINIENAAAYAAAGADILVT 257 (272)
T ss_pred CceEE-EECCCCHHHHHHHHHcCCcEEEE
Confidence 45544 55566778888999999987744
No 325
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=34.56 E-value=3.9e+02 Score=25.05 Aligned_cols=66 Identities=18% Similarity=0.258 Sum_probs=35.5
Q ss_pred EEEEEeCCHH---HHHHHHHHHhhCCCEEEEECCHHH---HHHHhcccccccccCCCCCceeEEEEecCCCCCC--HHHH
Q 023816 31 HVLAVDDSFV---DRKVIERLLTISSCKVTAVDSGRR---ALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT--GYEL 102 (276)
Q Consensus 31 ~VLIVdD~~~---~~~~L~~~L~~~g~~v~~a~~g~~---al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~--G~el 102 (276)
+|.+|+-+.. ....++.+.+..|+.+..+.+..+ +++.+. ...++|+||+|. |+.+ ..+.
T Consensus 105 ~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~----------~~~~~D~ViIDt--~Gr~~~~~~~ 172 (270)
T PRK06731 105 TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK----------EEARVDYILIDT--AGKNYRASET 172 (270)
T ss_pred eEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHH----------hcCCCCEEEEEC--CCCCcCCHHH
Confidence 4555543322 344455566667777776655433 333331 224689999996 3433 3345
Q ss_pred HHHHHh
Q 023816 103 LKKIKV 108 (276)
Q Consensus 103 l~~Ir~ 108 (276)
++++++
T Consensus 173 l~el~~ 178 (270)
T PRK06731 173 VEEMIE 178 (270)
T ss_pred HHHHHH
Confidence 555543
No 326
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=34.28 E-value=91 Score=26.22 Aligned_cols=44 Identities=27% Similarity=0.229 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhCCCEEEE---ECCHHHHH-HHhcccccccccCCCCCceeEEEEe
Q 023816 41 DRKVIERLLTISSCKVTA---VDSGRRAL-QFLGLDEEQSINGFDGLKVDLIITD 91 (276)
Q Consensus 41 ~~~~L~~~L~~~g~~v~~---a~~g~~al-~~l~~~~~~~~~~~~~~~~DlIL~D 91 (276)
+...|+++|++.|+++.. +.+..+.+ +.+... .++...|+||+-
T Consensus 21 n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~-------~~~~~~DlVitt 68 (152)
T cd00886 21 SGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEW-------ADEDGVDLILTT 68 (152)
T ss_pred hHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHH-------HhcCCCCEEEEC
Confidence 566789999999987664 34433333 222110 022268999965
No 327
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=34.18 E-value=5.9e+02 Score=26.96 Aligned_cols=42 Identities=14% Similarity=0.399 Sum_probs=27.9
Q ss_pred ccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHH
Q 023816 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIK 197 (276)
Q Consensus 152 ~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~ 197 (276)
+.....+|||+--... ..+.+..|.++|+.+|.+.+.+....
T Consensus 491 EAMA~GlPVVATdvGG----~~EiV~dG~nG~LVp~~D~~aLa~ai 532 (578)
T PRK15490 491 EAQMVGVPVISTPAGG----SAECFIEGVSGFILDDAQTVNLDQAC 532 (578)
T ss_pred HHHHhCCCEEEeCCCC----cHHHcccCCcEEEECCCChhhHHHHH
Confidence 3344578998554332 33566789999999998876664443
No 328
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=34.13 E-value=2.5e+02 Score=24.87 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=23.9
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
.+|+++=.+-...+++.++++.|++..+.-
T Consensus 74 ~~pv~~~ggi~~~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 74 FMPLTVGGGIRSLEDAKKLLSLGADKVSIN 103 (232)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 478877777778888888999999877664
No 329
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=34.07 E-value=2.1e+02 Score=24.69 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=11.8
Q ss_pred CCCCCHHHHHHHHHhhCC
Q 023816 94 MPGMTGYELLKKIKVTTP 111 (276)
Q Consensus 94 mp~~~G~ell~~Ir~~~p 111 (276)
|-.-.|.+.++.||+..|
T Consensus 34 l~~~~g~~~i~~l~~~~~ 51 (206)
T TIGR03128 34 LIKNEGIEAVKEMKEAFP 51 (206)
T ss_pred HHHHhCHHHHHHHHHHCC
Confidence 434457788888887544
No 330
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=33.93 E-value=2.6e+02 Score=24.78 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=23.4
Q ss_pred CCeEEEEecCCCHHHHHH-HHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDR-CLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~-al~~Ga~d~l~ 185 (276)
++||++.-+-...+++.+ +.+.||+..+.
T Consensus 197 ~ipvia~GGi~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 197 SIPVIALGGAGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred CCCEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 589888887788888888 66789988764
No 331
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=33.91 E-value=1.1e+02 Score=25.93 Aligned_cols=66 Identities=23% Similarity=0.218 Sum_probs=42.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCE-EEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCC--CCCCHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCK-VTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM--PGMTGYELLK 104 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~-v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~m--p~~~G~ell~ 104 (276)
..+|..+|-++...+..++-++..+.+ +.. ..+. ++.+ ...+||+|+++.-. ...+|.++.+
T Consensus 55 ~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~---~~~~-----------~~~~fD~Iv~NPP~~~~~~~~~~~~~ 120 (170)
T PF05175_consen 55 DAKVTAVDINPDALELAKRNAERNGLENVEVVQSDL---FEAL-----------PDGKFDLIVSNPPFHAGGDDGLDLLR 120 (170)
T ss_dssp CEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESST---TTTC-----------CTTCEEEEEE---SBTTSHCHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhcCccccccccccc---cccc-----------cccceeEEEEccchhcccccchhhHH
Confidence 557999999999999999999888765 444 2222 1222 44689999999522 2334666766
Q ss_pred HHHh
Q 023816 105 KIKV 108 (276)
Q Consensus 105 ~Ir~ 108 (276)
++-+
T Consensus 121 ~~i~ 124 (170)
T PF05175_consen 121 DFIE 124 (170)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 332
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=33.89 E-value=3.3e+02 Score=28.67 Aligned_cols=53 Identities=19% Similarity=0.142 Sum_probs=31.2
Q ss_pred cEEEEEeCCHH---HHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 30 VHVLAVDDSFV---DRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 30 ~~VLIVdD~~~---~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
.+|.+|+-|.. ..+.+..+-+..|+.+..+.+..+..+.+. +-..+|+||+|.
T Consensus 381 kkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~----------~l~~~DLVLIDT 436 (559)
T PRK12727 381 RDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLE----------RLRDYKLVLIDT 436 (559)
T ss_pred CceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHH----------HhccCCEEEecC
Confidence 45777764431 234445454566777777666655554442 123589999996
No 333
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=33.83 E-value=2.3e+02 Score=25.31 Aligned_cols=44 Identities=18% Similarity=0.272 Sum_probs=31.1
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC---CHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKPV---KLSDVKRIKDYL 200 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv---~~~~L~~~~~~l 200 (276)
.+||++--+-...+++.++++.|++..+.=-. +++.+.++.+.+
T Consensus 71 ~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~~ 117 (243)
T cd04731 71 FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVENPELIREIAKRF 117 (243)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhhChHHHHHHHHHc
Confidence 47888888888889999999999887655321 234455665555
No 334
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=33.73 E-value=3.5e+02 Score=26.77 Aligned_cols=70 Identities=11% Similarity=0.007 Sum_probs=42.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCE-EEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCK-VTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~-v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
.+|..||-++...+..++-++..|.. +.. ..+..+.+..+. +....||+|++|- |-....+.++.|.
T Consensus 320 ~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~---------~~~~~fD~Vi~dP--Pr~g~~~~~~~l~ 388 (443)
T PRK13168 320 AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP---------WALGGFDKVLLDP--PRAGAAEVMQALA 388 (443)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh---------hhcCCCCEEEECc--CCcChHHHHHHHH
Confidence 47889999999888888887766642 322 445544432210 0234699999985 3322335667776
Q ss_pred hhC
Q 023816 108 VTT 110 (276)
Q Consensus 108 ~~~ 110 (276)
+..
T Consensus 389 ~~~ 391 (443)
T PRK13168 389 KLG 391 (443)
T ss_pred hcC
Confidence 543
No 335
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=33.63 E-value=1.6e+02 Score=30.16 Aligned_cols=57 Identities=25% Similarity=0.377 Sum_probs=40.4
Q ss_pred CCceeEEEEecCCCCCC--HHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCe
Q 023816 82 GLKVDLIITDYCMPGMT--GYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIP 159 (276)
Q Consensus 82 ~~~~DlIL~D~~mp~~~--G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 159 (276)
+...|+|.+|.- .+-+ -++.+++||+.+| +++
T Consensus 258 ~ag~d~i~iD~~-~g~~~~~~~~i~~ik~~~p---------------------------------------------~~~ 291 (505)
T PLN02274 258 KAGVDVVVLDSS-QGDSIYQLEMIKYIKKTYP---------------------------------------------ELD 291 (505)
T ss_pred HcCCCEEEEeCC-CCCcHHHHHHHHHHHHhCC---------------------------------------------CCc
Confidence 446999999984 2333 3489999998776 566
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 160 VVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 160 iV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
||+ -.=...+....|+++|||...+
T Consensus 292 vi~-g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 292 VIG-GNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred EEE-ecCCCHHHHHHHHHcCcCEEEE
Confidence 654 2234567788999999987754
No 336
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=33.54 E-value=4.5e+02 Score=25.46 Aligned_cols=46 Identities=9% Similarity=0.085 Sum_probs=27.7
Q ss_pred ccCCCCCeEEEEecCCCHHHHHHHHh---cCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 152 SSALREIPVVIMSSENILARIDRCLE---DGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 152 ~~~~~~ipiV~ls~~~~~~~~~~al~---~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
+.....+|+|+........ +.++ .|..+|+.. +.+++.+.+.++..
T Consensus 343 EAMa~G~pvIa~~~ggp~~---~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~ 391 (419)
T cd03806 343 EYMAAGLIPLAHASGGPLL---DIVVPWDGGPTGFLAS--TAEEYAEAIEKILS 391 (419)
T ss_pred HHHHcCCcEEEEcCCCCch---heeeccCCCCceEEeC--CHHHHHHHHHHHHh
Confidence 4444577777654323222 2334 688899974 78888776666654
No 337
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=33.01 E-value=2.7e+02 Score=25.53 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=33.6
Q ss_pred ccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 023816 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 152 ~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~~ 203 (276)
++....+|||+.-.... ..+.+..|.++|+.+|-+.+++.+.+..+...
T Consensus 297 EAma~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 297 EALSHGLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELLND 345 (372)
T ss_pred HHHhCCCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHHcC
Confidence 44455788887532211 23556789999999999999997777666543
No 338
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=32.94 E-value=3.7e+02 Score=24.39 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=31.0
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC--CCCHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK--PVKLSDVKRIKDYL 200 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K--Pv~~~~L~~~~~~l 200 (276)
.+|+.+=-+-...+++.++++.|++..+.- -++++.++++.+..
T Consensus 73 ~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~~ 118 (228)
T PRK04128 73 GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFDLEFLEKVTSEF 118 (228)
T ss_pred CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcCHHHHHHHHHHc
Confidence 477777666778899999999999987763 33455555555443
No 339
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=32.91 E-value=4.4e+02 Score=26.31 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=25.4
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
++|||+--+-....++.+|+++||+-...=
T Consensus 327 ~vpviadGGi~~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 327 GIPVIADGGIRYSGDIVKALAAGADAVMLG 356 (450)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 688888778889999999999999877653
No 340
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=32.88 E-value=2.8e+02 Score=26.95 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=18.6
Q ss_pred EEEEecCCCHHHHHHHHhcCCCe
Q 023816 160 VVIMSSENILARIDRCLEDGAED 182 (276)
Q Consensus 160 iV~ls~~~~~~~~~~al~~Ga~d 182 (276)
.+-.|+.-..+.+.+..+.|+|-
T Consensus 264 ~lEaSGGIt~~ni~~yA~tGVD~ 286 (308)
T PLN02716 264 ETEASGNVTLDTVHKIGQTGVTY 286 (308)
T ss_pred eEEEECCCCHHHHHHHHHcCCCE
Confidence 47788888888888888889853
No 341
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=32.85 E-value=4.1e+02 Score=26.22 Aligned_cols=87 Identities=21% Similarity=0.184 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhCCCEEEE--ECCHHHHHHHhcccccccccCCCCCceeEEEEecC-CCCC----CHHHHHHHHHhhCCCC
Q 023816 41 DRKVIERLLTISSCKVTA--VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC-MPGM----TGYELLKKIKVTTPFN 113 (276)
Q Consensus 41 ~~~~L~~~L~~~g~~v~~--a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~-mp~~----~G~ell~~Ir~~~p~~ 113 (276)
..+.++.+-+..+..++. +.+.++|.+.+ +..+|.|++.-+ -... ..++++.+|++..
T Consensus 224 ~w~~i~~ir~~~~~pviiKgV~~~eda~~a~------------~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~--- 288 (361)
T cd04736 224 NWQDLRWLRDLWPHKLLVKGIVTAEDAKRCI------------ELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT--- 288 (361)
T ss_pred CHHHHHHHHHhCCCCEEEecCCCHHHHHHHH------------HCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh---
Confidence 445566665555554443 67888888776 345666654321 1112 2477777777522
Q ss_pred cccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 114 FLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++||++-.+-....++.+|+..||+-...
T Consensus 289 -------------------------------------------~~~vi~dGGIr~g~Dv~KALaLGA~aV~i 317 (361)
T cd04736 289 -------------------------------------------YKPVLIDSGIRRGSDIVKALALGANAVLL 317 (361)
T ss_pred -------------------------------------------CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 37888888888899999999999988754
No 342
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=32.83 E-value=1.7e+02 Score=27.32 Aligned_cols=43 Identities=14% Similarity=0.295 Sum_probs=33.8
Q ss_pred CeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 023816 158 IPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 201 (276)
Q Consensus 158 ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~ 201 (276)
-.+|.++.++. +...+|.+.|+|-...-|+..+++++++..+.
T Consensus 182 ~~~Igvev~s~-eea~~A~~~gaDyI~ld~~~~e~l~~~~~~~~ 224 (268)
T cd01572 182 TLKIEVEVETL-EQLKEALEAGADIIMLDNMSPEELREAVALLK 224 (268)
T ss_pred CCeEEEEECCH-HHHHHHHHcCCCEEEECCcCHHHHHHHHHHcC
Confidence 34567777654 67888999999888899999999988877653
No 343
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=32.72 E-value=80 Score=30.58 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=43.8
Q ss_pred EEEEEeCCHHHH-----HHHHHHHhhCCCEEEEEC------C---HHHHHHHhcccccccccCCCCCceeEEEEecCCCC
Q 023816 31 HVLAVDDSFVDR-----KVIERLLTISSCKVTAVD------S---GRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG 96 (276)
Q Consensus 31 ~VLIVdD~~~~~-----~~L~~~L~~~g~~v~~a~------~---g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~ 96 (276)
++|||-|..... +.+.+.|+..|+++..++ + ..++++.+ ++.++|+||- ..|
T Consensus 28 r~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~-----------~~~~~D~IIa---iGG 93 (383)
T cd08186 28 KVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLG-----------REFGAQAVIA---IGG 93 (383)
T ss_pred EEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHH-----------HHcCCCEEEE---eCC
Confidence 799998876543 568888888888777654 2 23444444 4567898872 457
Q ss_pred CCHHHHHHHHHh
Q 023816 97 MTGYELLKKIKV 108 (276)
Q Consensus 97 ~~G~ell~~Ir~ 108 (276)
.+-+++.|.+..
T Consensus 94 GS~iD~aK~ia~ 105 (383)
T cd08186 94 GSPIDSAKSAAI 105 (383)
T ss_pred ccHHHHHHHHHH
Confidence 777777777754
No 344
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=32.69 E-value=2.4e+02 Score=25.88 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=24.7
Q ss_pred CCeEEEEecCCCHHHHHHHH-hcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCL-EDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al-~~Ga~d~l~ 185 (276)
.+||++--+-...++..+++ +.|++..+.
T Consensus 196 ~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 196 KIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred CCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 58999888888999999998 799987754
No 345
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=32.56 E-value=4e+02 Score=24.51 Aligned_cols=56 Identities=11% Similarity=0.014 Sum_probs=36.9
Q ss_pred HHHHHHHHhhCCCEEEE-------ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhC
Q 023816 42 RKVIERLLTISSCKVTA-------VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTT 110 (276)
Q Consensus 42 ~~~L~~~L~~~g~~v~~-------a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~ 110 (276)
.+.+++.++..|.++.. ..+....++.+ ...++|+|++-. ...+...+++.+++..
T Consensus 161 ~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i-----------~~~~~d~v~~~~--~~~~~~~~~~~~~~~g 223 (362)
T cd06343 161 LKGLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKL-----------KAAGADVVVLAT--TPKFAAQAIRKAAELG 223 (362)
T ss_pred HHHHHHHHHHcCCeEEEEeeecCCCccHHHHHHHH-----------HhcCCCEEEEEc--CcHHHHHHHHHHHHcC
Confidence 34456677778887654 12445566666 566799999754 3456777888888754
No 346
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=32.52 E-value=3e+02 Score=31.42 Aligned_cols=71 Identities=10% Similarity=0.142 Sum_probs=50.1
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHhhCCCEEEEEC---CHHHHHHHhcccccccccCCCCCceeEEEEecCCCC-CCH-
Q 023816 29 EVHVLAV----DDSFVDRKVIERLLTISSCKVTAVD---SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-MTG- 99 (276)
Q Consensus 29 ~~~VLIV----dD~~~~~~~L~~~L~~~g~~v~~a~---~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~-~~G- 99 (276)
.-+|++. |-+.+=...+.-+|+..||+|+-.. ..++.++.+ ++.++|+|-+..-|.. +..
T Consensus 732 ~gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa-----------~e~~~diVgLS~Lmt~t~~~m 800 (1178)
T TIGR02082 732 KGKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAA-----------KDHNADVIGLSGLITPSLDEM 800 (1178)
T ss_pred CCeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH-----------HHhCCCEEEEcCcccccHHHH
Confidence 3466666 5666666777788899999999743 456666666 6778999999887643 443
Q ss_pred HHHHHHHHhhC
Q 023816 100 YELLKKIKVTT 110 (276)
Q Consensus 100 ~ell~~Ir~~~ 110 (276)
.++++.|++..
T Consensus 801 ~~vi~~L~~~g 811 (1178)
T TIGR02082 801 KEVAEEMNRRG 811 (1178)
T ss_pred HHHHHHHHhcC
Confidence 35788888643
No 347
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=32.45 E-value=4.4e+02 Score=25.85 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=26.2
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
.+||++-.+-....++.+++..||+....=
T Consensus 276 ~i~vi~dGGIr~g~Di~kaLalGA~~V~iG 305 (351)
T cd04737 276 RVPIIFDSGVRRGEHVFKALASGADAVAVG 305 (351)
T ss_pred CCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 589999999899999999999999987543
No 348
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=32.33 E-value=2.7e+02 Score=32.02 Aligned_cols=72 Identities=11% Similarity=0.148 Sum_probs=51.7
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHhhCCCEEEEEC---CHHHHHHHhcccccccccCCCCCceeEEEEecCCCC-CCH-
Q 023816 29 EVHVLAV----DDSFVDRKVIERLLTISSCKVTAVD---SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-MTG- 99 (276)
Q Consensus 29 ~~~VLIV----dD~~~~~~~L~~~L~~~g~~v~~a~---~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~-~~G- 99 (276)
.-+||+. |-+.+=...+.-+|+..||+|+-.. ..++.++.+ .+.++|+|.+..-|.. +..
T Consensus 751 ~gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa-----------~e~~~diVgLS~L~t~s~~~m 819 (1229)
T PRK09490 751 NGKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETA-----------KEENADIIGLSGLITPSLDEM 819 (1229)
T ss_pred CCeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH-----------HHhCCCEEEEcCcchhhHHHH
Confidence 4567766 6667777778888899999999743 456666666 6778999999987643 333
Q ss_pred HHHHHHHHhhCC
Q 023816 100 YELLKKIKVTTP 111 (276)
Q Consensus 100 ~ell~~Ir~~~p 111 (276)
.++++.|++..+
T Consensus 820 ~~~i~~L~~~g~ 831 (1229)
T PRK09490 820 VHVAKEMERQGF 831 (1229)
T ss_pred HHHHHHHHhcCC
Confidence 457888886543
No 349
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=32.32 E-value=2.2e+02 Score=27.18 Aligned_cols=77 Identities=19% Similarity=0.134 Sum_probs=44.2
Q ss_pred EEEEEeCCHHHHHHHHHHHh---hCCCEEEEEC-----------CHHHHHHHhcccccccccCCCCCceeEEEEecCCCC
Q 023816 31 HVLAVDDSFVDRKVIERLLT---ISSCKVTAVD-----------SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG 96 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~---~~g~~v~~a~-----------~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~ 96 (276)
+|.++=|+..-...++.+++ ..|.+|.... +.+..|+.+ +..++++|++|.. .
T Consensus 120 ~vailYdsd~gl~~lq~l~~~~~~~g~~V~~~~~~~i~~~~~~~d~~~~L~~i-----------k~~~~~~Iil~~~--~ 186 (370)
T cd06389 120 KFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDRKDEAYRSLFQDL-----------ENKKERRVILDCE--R 186 (370)
T ss_pred EEEEEecCchHHHHHHHHHHhhccCCceEEEEEeecCCCccchHHHHHHHHHh-----------ccccceEEEEECC--H
Confidence 34443334355555665554 4576665322 344555555 5678999999864 3
Q ss_pred CCHHHHHHHHHhhCCCCcccchhe
Q 023816 97 MTGYELLKKIKVTTPFNFLYSTII 120 (276)
Q Consensus 97 ~~G~ell~~Ir~~~p~~~~~~~~~ 120 (276)
.+...+++.+++..-..--|.||.
T Consensus 187 ~~~~~il~qa~~~gm~~~~y~~il 210 (370)
T cd06389 187 DKVNDIVDQVITIGKHVKGYHYII 210 (370)
T ss_pred HHHHHHHHHHHHhCccccceEEEE
Confidence 446778888877554333344433
No 350
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=32.20 E-value=5.6e+02 Score=26.08 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=26.6
Q ss_pred EEEecCCCHHHHHHHHhcCC----CeEEeCCCCHHHHHH
Q 023816 161 VIMSSENILARIDRCLEDGA----EDFIVKPVKLSDVKR 195 (276)
Q Consensus 161 V~ls~~~~~~~~~~al~~Ga----~d~l~KPv~~~~L~~ 195 (276)
|+..+=...+....+.+.|+ ..|+-||....++.+
T Consensus 612 viaegVEt~~~~~~l~~~g~d~~QGy~~~~P~~~~~~~~ 650 (660)
T PRK11829 612 VMAEGVETEEQRQWLLEHGIQCGQGFLFSPPLPRAEFEA 650 (660)
T ss_pred EEEecCCCHHHHHHHHHcCCCEEecCcccCCCCHHHHHH
Confidence 44566677778888889998 457889999888743
No 351
>PRK01581 speE spermidine synthase; Validated
Probab=32.16 E-value=2e+02 Score=28.67 Aligned_cols=68 Identities=24% Similarity=0.186 Sum_probs=42.2
Q ss_pred ccEEEEEeCCHHHHHHHHHH--Hh---h---CCCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC--
Q 023816 29 EVHVLAVDDSFVDRKVIERL--LT---I---SSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM-- 97 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~--L~---~---~g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~-- 97 (276)
.-+|.+||=++...+..+++ |. . .+-++.. ..++.+.++.. ...||+|++|+-=|..
T Consensus 174 v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~------------~~~YDVIIvDl~DP~~~~ 241 (374)
T PRK01581 174 VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP------------SSLYDVIIIDFPDPATEL 241 (374)
T ss_pred CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc------------CCCccEEEEcCCCccccc
Confidence 45889999999888887752 21 1 1234544 67777666532 3479999999743321
Q ss_pred ----CHHHHHHHHHh
Q 023816 98 ----TGYELLKKIKV 108 (276)
Q Consensus 98 ----~G~ell~~Ir~ 108 (276)
-..++.+.+++
T Consensus 242 ~~~LyT~EFy~~~~~ 256 (374)
T PRK01581 242 LSTLYTSELFARIAT 256 (374)
T ss_pred hhhhhHHHHHHHHHH
Confidence 22456666654
No 352
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=31.99 E-value=1.8e+02 Score=26.43 Aligned_cols=29 Identities=10% Similarity=0.151 Sum_probs=25.1
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++|+++--+-...++..++.+.|+++.+.
T Consensus 182 ~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 182 DEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 58998888888899999999999998765
No 353
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=31.96 E-value=4.7e+02 Score=26.47 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=15.1
Q ss_pred CceeEEEEecCCCCCCH--HHHHHHHHh
Q 023816 83 LKVDLIITDYCMPGMTG--YELLKKIKV 108 (276)
Q Consensus 83 ~~~DlIL~D~~mp~~~G--~ell~~Ir~ 108 (276)
..+|+||+|.- |... -+++++++.
T Consensus 181 ~~~DvViIDTa--Gr~~~d~~lm~El~~ 206 (429)
T TIGR01425 181 ENFDIIIVDTS--GRHKQEDSLFEEMLQ 206 (429)
T ss_pred CCCCEEEEECC--CCCcchHHHHHHHHH
Confidence 46899999973 4332 245566654
No 354
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=31.86 E-value=4.2e+02 Score=24.56 Aligned_cols=50 Identities=8% Similarity=0.072 Sum_probs=34.8
Q ss_pred cCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHhhh
Q 023816 153 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDVN 205 (276)
Q Consensus 153 ~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~~~~ 205 (276)
.....+|||..-... ...+.+..|-++++..|-+.+++.+.+.++.....
T Consensus 277 Ama~G~Pvv~s~~~~---g~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 277 AMSYGIPCISSDCMS---GPRDIIKPGLNGELYTPGNIDEFVGKLNKVISGEV 326 (359)
T ss_pred HHHcCCCEEEeCCCC---ChHHHccCCCceEEECCCCHHHHHHHHHHHHhCcc
Confidence 334478887532022 23456778999999999999999888887765543
No 355
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=31.82 E-value=2.2e+02 Score=24.28 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=11.5
Q ss_pred CCHHHHHHHHHhhCC
Q 023816 97 MTGYELLKKIKVTTP 111 (276)
Q Consensus 97 ~~G~ell~~Ir~~~p 111 (276)
..|.+.++.+|+..+
T Consensus 38 ~~g~~~i~~i~~~~~ 52 (202)
T cd04726 38 SEGMEAVRALREAFP 52 (202)
T ss_pred HhCHHHHHHHHHHCC
Confidence 457899999997654
No 356
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=31.78 E-value=3.5e+02 Score=23.64 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=29.7
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEE--eCCCCHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFI--VKPVKLSDVKRIKDYL 200 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l--~KPv~~~~L~~~~~~l 200 (276)
.+||++...-.+...+..++++||+..+ ..-+..++++.++++.
T Consensus 72 ~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 72 SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 5888876555566678899999999987 3333335555555444
No 357
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=31.68 E-value=1.2e+02 Score=26.66 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=33.8
Q ss_pred EEEEEeCC---------HHHHHHHHHHHh-hCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCC
Q 023816 31 HVLAVDDS---------FVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (276)
Q Consensus 31 ~VLIVdD~---------~~~~~~L~~~L~-~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp 95 (276)
||||+.-. +...+.|+.+|+ ..+++|+..++... +..- .-..+|+|++.....
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~-~~~~-----------~L~~~Dvvv~~~~~~ 63 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDD-LTPE-----------NLKGYDVVVFYNTGG 63 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGC-TSHH-----------CHCT-SEEEEE-SSC
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCccc-CChh-----------HhcCCCEEEEECCCC
Confidence 57777554 256778899998 78899998777322 1110 113699999988775
No 358
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=31.64 E-value=3.4e+02 Score=23.38 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=21.4
Q ss_pred eEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 159 PVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 159 piV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
+.|++.+.-..+...++++.|++.+..
T Consensus 159 ~~i~v~GGI~~~n~~~~~~~Ga~~v~v 185 (206)
T TIGR03128 159 ARVAVAGGINLDTIPDVIKLGPDIVIV 185 (206)
T ss_pred CcEEEECCcCHHHHHHHHHcCCCEEEE
Confidence 345667777888899999999997765
No 359
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=31.23 E-value=1.9e+02 Score=21.73 Aligned_cols=68 Identities=16% Similarity=0.052 Sum_probs=40.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhC--CCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEec-CCCCCCHH---
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTIS--SCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY-CMPGMTGY--- 100 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~--g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~-~mp~~~G~--- 100 (276)
+..+|..||=++...+..++..... +-++.. ..+...... ...+||+|+++. .+...-..
T Consensus 24 ~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------------~~~~~D~v~~~~~~~~~~~~~~~~ 90 (112)
T PF12847_consen 24 PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD-------------FLEPFDLVICSGFTLHFLLPLDER 90 (112)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-------------TSSCEEEEEECSGSGGGCCHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-------------cCCCCCEEEECCCccccccchhHH
Confidence 4678999999999999999888433 234443 233211111 234699999998 33333332
Q ss_pred -HHHHHHHh
Q 023816 101 -ELLKKIKV 108 (276)
Q Consensus 101 -ell~~Ir~ 108 (276)
++++++++
T Consensus 91 ~~~l~~~~~ 99 (112)
T PF12847_consen 91 RRVLERIRR 99 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 34555543
No 360
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=31.08 E-value=1.5e+02 Score=27.56 Aligned_cols=104 Identities=21% Similarity=0.289 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchh
Q 023816 40 VDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTI 119 (276)
Q Consensus 40 ~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~ 119 (276)
...+.|.++.+..|+.+..-.-..++++++. ++++-..=+--.+.+-+.+++++.+.
T Consensus 56 e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~-------------~~~~~~~KIaS~dl~n~~lL~~~A~t---------- 112 (241)
T PF03102_consen 56 EQHKELFEYCKELGIDFFSTPFDEESVDFLE-------------ELGVPAYKIASGDLTNLPLLEYIAKT---------- 112 (241)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-SHHHHHHHH-------------HHT-SEEEE-GGGTT-HHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHcCCEEEECCCCHHHHHHHH-------------HcCCCEEEeccccccCHHHHHHHHHh----------
Confidence 3445667777889998887555677788872 23344444555577889999999863
Q ss_pred eehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHH----hcCCCeEEe------CCCC
Q 023816 120 IVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCL----EDGAEDFIV------KPVK 189 (276)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al----~~Ga~d~l~------KPv~ 189 (276)
..|||+=|+-...+++.+|+ +.|..++.. -|..
T Consensus 113 -------------------------------------gkPvIlSTG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~ 155 (241)
T PF03102_consen 113 -------------------------------------GKPVILSTGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTP 155 (241)
T ss_dssp --------------------------------------S-EEEE-TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--
T ss_pred -------------------------------------CCcEEEECCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCC
Confidence 57999999999988887765 557777753 3777
Q ss_pred HHHH-HHHHHHHHHh
Q 023816 190 LSDV-KRIKDYLTRD 203 (276)
Q Consensus 190 ~~~L-~~~~~~l~~~ 203 (276)
.+++ .+.+..+.+.
T Consensus 156 ~e~~NL~~i~~L~~~ 170 (241)
T PF03102_consen 156 PEDVNLRVIPTLKER 170 (241)
T ss_dssp GGG--TTHHHHHHHH
T ss_pred hHHcChHHHHHHHHh
Confidence 7776 3555555543
No 361
>PF13941 MutL: MutL protein
Probab=31.06 E-value=5.9e+02 Score=26.04 Aligned_cols=107 Identities=18% Similarity=0.243 Sum_probs=67.8
Q ss_pred CCCCCCccEEEEEeCCH-HHHHHHHHHHhhCCCEEEEECCH---HHHHHHhcccccccccCCCCCceeEEEEecCCCCCC
Q 023816 23 SPSDTEEVHVLAVDDSF-VDRKVIERLLTISSCKVTAVDSG---RRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT 98 (276)
Q Consensus 23 ~~~~~~~~~VLIVdD~~-~~~~~L~~~L~~~g~~v~~a~~g---~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~ 98 (276)
..|.-.++++.++.=-+ ...+..++.--..|-+|..+.++ ++-++.+ .+.+||+||+- .+.|
T Consensus 70 ~SSAaGGLrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~~l~~~~l~~i-----------~~~~PDiILLa---GGtD 135 (457)
T PF13941_consen 70 CSSAAGGLRMVVIGLVPDLTAEAAKRAALGAGARVLQVYSYELTEEDLEEI-----------REIRPDIILLA---GGTD 135 (457)
T ss_pred ECCCCCcceEEEEecCHHHHHHHHHHHHhcCCcEEEEEeccCCCHHHHHHH-----------hccCCCEEEEe---CCcc
Confidence 44556677877775333 34444455444567676664443 4556666 67899999973 3444
Q ss_pred H------HHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHH
Q 023816 99 G------YELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARI 172 (276)
Q Consensus 99 G------~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~ 172 (276)
| +++.+.|.... ..+|||+.-.....+.+
T Consensus 136 gG~~~~il~nA~~La~~~---------------------------------------------~~~pVIyAGN~~a~~~v 170 (457)
T PF13941_consen 136 GGNKEVILHNAEMLAEAN---------------------------------------------LRIPVIYAGNKAAQDEV 170 (457)
T ss_pred CCchHHHHHHHHHHHhCC---------------------------------------------CCCcEEEECCHHHHHHH
Confidence 4 44555555322 26888887777777788
Q ss_pred HHHHh-cCCCeEEeCCC
Q 023816 173 DRCLE-DGAEDFIVKPV 188 (276)
Q Consensus 173 ~~al~-~Ga~d~l~KPv 188 (276)
.+.++ .|.+-|++.-|
T Consensus 171 ~~il~~~~~~~~~~~NV 187 (457)
T PF13941_consen 171 EEILEKAGKEVVITENV 187 (457)
T ss_pred HHHHHhCCCCEEEeCCC
Confidence 88888 77777777644
No 362
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.90 E-value=4.2e+02 Score=24.29 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=20.5
Q ss_pred CCHHHHHHHHhcCCCeEEeCCCCHHHHH
Q 023816 167 NILARIDRCLEDGAEDFIVKPVKLSDVK 194 (276)
Q Consensus 167 ~~~~~~~~al~~Ga~d~l~KPv~~~~L~ 194 (276)
-+.+..+.|+++|| +|++-|.--.++.
T Consensus 79 l~~e~a~~a~~aGA-~FiVsP~~~~~v~ 105 (222)
T PRK07114 79 VDAATAALYIQLGA-NFIVTPLFNPDIA 105 (222)
T ss_pred cCHHHHHHHHHcCC-CEEECCCCCHHHH
Confidence 35678889999999 5777787666663
No 363
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=30.86 E-value=4.8e+02 Score=24.95 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=20.3
Q ss_pred CCCceeEEEEecCCCCCCHHHHHHHHHhhC
Q 023816 81 DGLKVDLIITDYCMPGMTGYELLKKIKVTT 110 (276)
Q Consensus 81 ~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~ 110 (276)
+..++|.|++|..- .....+++++++..
T Consensus 175 k~~~~~~iil~~~~--~~~~~il~qa~~~g 202 (371)
T cd06388 175 DRRQEKKFVIDCEI--ERLQNILEQIVSVG 202 (371)
T ss_pred cccccEEEEEECCH--HHHHHHHHHHHhcC
Confidence 56688999998643 44677888888744
No 364
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=30.73 E-value=2.2e+02 Score=24.35 Aligned_cols=20 Identities=25% Similarity=0.033 Sum_probs=14.0
Q ss_pred HHHHHHHHhhCCCEEEEECC
Q 023816 42 RKVIERLLTISSCKVTAVDS 61 (276)
Q Consensus 42 ~~~L~~~L~~~g~~v~~a~~ 61 (276)
...+++.+++.|+++...+.
T Consensus 18 ~~~i~~~~~~~g~~~~~~~~ 37 (267)
T cd06284 18 LKGIEDEAREAGYGVLLGDT 37 (267)
T ss_pred HHHHHHHHHHcCCeEEEecC
Confidence 35567777788988876553
No 365
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=30.56 E-value=1.1e+02 Score=24.31 Aligned_cols=36 Identities=8% Similarity=0.266 Sum_probs=26.3
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC--HHHH
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKPVK--LSDV 193 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~--~~~L 193 (276)
.+||+++|.+... .+.-++-.|+..++.++.. .+++
T Consensus 39 ~~pIiavt~~~~~-~r~l~l~~GV~p~~~~~~~~~~~~~ 76 (117)
T PF02887_consen 39 KVPIIAVTPNESV-ARQLSLYWGVYPVLIEEFDKDTEEL 76 (117)
T ss_dssp SSEEEEEESSHHH-HHHGGGSTTEEEEECSSHSHSHHHH
T ss_pred CCeEEEEcCcHHH-HhhhhcccceEEEEeccccccHHHH
Confidence 8999999975442 3344688999998888766 4554
No 366
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=30.50 E-value=2.8e+02 Score=26.27 Aligned_cols=65 Identities=18% Similarity=0.181 Sum_probs=41.0
Q ss_pred cEEEEEeCCHHHH---HHHHHHHhhCCCEEEE--E------CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCC
Q 023816 30 VHVLAVDDSFVDR---KVIERLLTISSCKVTA--V------DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT 98 (276)
Q Consensus 30 ~~VLIVdD~~~~~---~~L~~~L~~~g~~v~~--a------~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~ 98 (276)
=|+|||-|..... +.+.+.|+..|.++.. + ++.+++++.+ ++.++|+|| -+.|.+
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~-----------~~~~~D~II---avGGGS 88 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIA-----------RDNGADVVI---GIGGGK 88 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHH-----------hhcCCCEEE---EecCch
Confidence 4788888875543 3345556666766432 1 2334455554 567899887 356777
Q ss_pred HHHHHHHHHh
Q 023816 99 GYELLKKIKV 108 (276)
Q Consensus 99 G~ell~~Ir~ 108 (276)
-+++.|.+..
T Consensus 89 ~iD~aK~ia~ 98 (351)
T cd08170 89 TLDTAKAVAD 98 (351)
T ss_pred hhHHHHHHHH
Confidence 7888888864
No 367
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.40 E-value=4.6e+02 Score=24.80 Aligned_cols=92 Identities=12% Similarity=0.137 Sum_probs=55.6
Q ss_pred EEEEeCCHHHHH----HHHHHHhhCC--CEE-EEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHH
Q 023816 32 VLAVDDSFVDRK----VIERLLTISS--CKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (276)
Q Consensus 32 VLIVdD~~~~~~----~L~~~L~~~g--~~v-~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~ 104 (276)
|||=|.+..... .+++.=+..+ ..+ ..+.+.+|+.+.. ...+|.|.+|- -|.+.++
T Consensus 161 vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~------------~~gaDyI~lD~-----~~~e~l~ 223 (277)
T PRK08072 161 VMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAV------------AAGADIIMFDN-----RTPDEIR 223 (277)
T ss_pred EEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHH------------HcCCCEEEECC-----CCHHHHH
Confidence 566555443332 3333333344 233 3378888887765 35789999972 4567777
Q ss_pred HHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 105 KIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 105 ~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
++.+.-. .++| +..++.-..+.+.+..+.|++.+-
T Consensus 224 ~~~~~~~--------------------------------------------~~i~-i~AiGGIt~~ni~~~a~~Gvd~IA 258 (277)
T PRK08072 224 EFVKLVP--------------------------------------------SAIV-TEASGGITLENLPAYGGTGVDYIS 258 (277)
T ss_pred HHHHhcC--------------------------------------------CCce-EEEECCCCHHHHHHHHHcCCCEEE
Confidence 7775321 0233 445666778888899999998664
Q ss_pred e
Q 023816 185 V 185 (276)
Q Consensus 185 ~ 185 (276)
+
T Consensus 259 v 259 (277)
T PRK08072 259 L 259 (277)
T ss_pred E
Confidence 3
No 368
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=30.39 E-value=2.8e+02 Score=28.44 Aligned_cols=29 Identities=17% Similarity=0.130 Sum_probs=25.6
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+|||+-.+-....++.+|+.+||+-.+.
T Consensus 352 ~~~viadgGir~~gdi~KAla~GA~~vm~ 380 (502)
T PRK07107 352 YIPICSDGGIVYDYHMTLALAMGADFIML 380 (502)
T ss_pred cceEEEcCCCCchhHHHHHHHcCCCeeee
Confidence 48999999999999999999999987654
No 369
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=30.35 E-value=3.8e+02 Score=25.81 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=48.0
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCC
Q 023816 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTP 111 (276)
Q Consensus 32 VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p 111 (276)
|-+.=.++.....+...|...-|.+....++++.++++.. ....+|++++-.. ..-..+...+.+...
T Consensus 3 I~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~---------~~e~iDCLvle~~---~~~~~~~~~L~e~g~ 70 (283)
T PF07688_consen 3 ICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQ---------HREQIDCLVLEQS---PLLPPLFNQLYEQGI 70 (283)
T ss_dssp EEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCC---------TTTT-SEEEEETT---STTHHHHHHHHHCT-
T ss_pred EEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHh---------chhccCEEEEecC---CCcHHHHHHHHHcCc
Confidence 3334456777888888998888999999999999999943 4557999998864 445667788876544
No 370
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=30.35 E-value=61 Score=28.25 Aligned_cols=30 Identities=13% Similarity=0.080 Sum_probs=25.4
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECC
Q 023816 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDS 61 (276)
Q Consensus 32 VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~ 61 (276)
||+||.....-..+.++|+..|+.+..+..
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~~ 31 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVRN 31 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEEC
Confidence 899998877778899999999998887654
No 371
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=30.30 E-value=1.5e+02 Score=28.43 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=44.4
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHhhCCCEEEEEC---------CHHHHHHHhcccccccccCCCCCceeEEEEecCCC
Q 023816 30 VHVLAVDDSFVDR-----KVIERLLTISSCKVTAVD---------SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (276)
Q Consensus 30 ~~VLIVdD~~~~~-----~~L~~~L~~~g~~v~~a~---------~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp 95 (276)
-++|||-|..... +.+.+.|+..|+++..++ +.+++.+.+ ++.++|+||- ..
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~-----------~~~~~D~IIa---vG 91 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIA-----------KKFNADFVIG---IG 91 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHH-----------HhcCCCEEEE---eC
Confidence 4899998876522 568888888888777653 234555555 5667898883 46
Q ss_pred CCCHHHHHHHHH
Q 023816 96 GMTGYELLKKIK 107 (276)
Q Consensus 96 ~~~G~ell~~Ir 107 (276)
|.+-+++.|-+.
T Consensus 92 GGSviD~aK~ia 103 (357)
T cd08181 92 GGSPLDAAKAIA 103 (357)
T ss_pred CchHHHHHHHHH
Confidence 777777777665
No 372
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=30.26 E-value=1.2e+02 Score=29.71 Aligned_cols=66 Identities=23% Similarity=0.385 Sum_probs=47.6
Q ss_pred CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccC
Q 023816 60 DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCF 139 (276)
Q Consensus 60 ~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (276)
.|.+||++.+.+|.+ .+-|+|++= |++.-+++++++|+..
T Consensus 225 ~n~~eAlre~~~D~~--------EGAD~lMVK---Pal~YLDIi~~~k~~~----------------------------- 264 (323)
T PRK09283 225 ANRREALREVALDIE--------EGADMVMVK---PALPYLDIIRRVKDEF----------------------------- 264 (323)
T ss_pred CCHHHHHHHHHhhHH--------hCCCEEEEc---CCchHHHHHHHHHhcC-----------------------------
Confidence 467788887766643 356777765 7888889999999744
Q ss_pred CcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCe
Q 023816 140 PFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAED 182 (276)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d 182 (276)
++|+.+.--+..-..+..|.+.|.-|
T Consensus 265 -----------------~~PvaaYqVSGEYaMikaAa~~G~~D 290 (323)
T PRK09283 265 -----------------NLPVAAYQVSGEYAMIKAAAQNGWID 290 (323)
T ss_pred -----------------CCCEEEEEccHHHHHHHHHHHcCCCC
Confidence 47888877666667777777777654
No 373
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=30.17 E-value=1.3e+02 Score=29.36 Aligned_cols=67 Identities=21% Similarity=0.356 Sum_probs=47.9
Q ss_pred CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccC
Q 023816 60 DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCF 139 (276)
Q Consensus 60 ~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (276)
.|.+||++.+.++.+ .+-|+|+.= |++.-+++++.+|...
T Consensus 222 ~n~~eAlre~~~Di~--------EGAD~lMVK---Pal~YLDIi~~~k~~~----------------------------- 261 (320)
T cd04823 222 ANSREALREVALDIA--------EGADMVMVK---PGMPYLDIIRRVKDEF----------------------------- 261 (320)
T ss_pred CCHHHHHHHHHhhHH--------hCCCEEEEc---CCchHHHHHHHHHHhc-----------------------------
Confidence 367778877766643 346777654 7788888889988643
Q ss_pred CcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeE
Q 023816 140 PFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDF 183 (276)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~ 183 (276)
.+|+.+.--+..-..+..|-+.|.-|+
T Consensus 262 -----------------~lPvaaYqVSGEYaMikaAa~~G~~d~ 288 (320)
T cd04823 262 -----------------GVPTFAYQVSGEYAMLKAAAQNGWLDE 288 (320)
T ss_pred -----------------CCCEEEEEccHHHHHHHHHHHcCCCcH
Confidence 488888877777777777778777654
No 374
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=30.11 E-value=3.2e+02 Score=24.86 Aligned_cols=44 Identities=16% Similarity=0.303 Sum_probs=31.3
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC---CHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKPV---KLSDVKRIKDYL 200 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv---~~~~L~~~~~~l 200 (276)
.+||.+--+-...+++.+++..||+..+.=-. +++.++++.+++
T Consensus 74 ~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~ 120 (254)
T TIGR00735 74 FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVKNPELIYELADRF 120 (254)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhhChHHHHHHHHHc
Confidence 47888888888899999999999988776422 233445555444
No 375
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=30.10 E-value=3.6e+02 Score=23.28 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=21.3
Q ss_pred eEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 159 PVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 159 piV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
++|++.+.-..+.+.++.+.|++.++.-
T Consensus 171 ~~i~v~GGI~~~nv~~l~~~GaD~vvvg 198 (220)
T PRK05581 171 ILIEVDGGINADNIKECAEAGADVFVAG 198 (220)
T ss_pred ceEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 4566767777788888999999977654
No 376
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=30.10 E-value=5.3e+02 Score=25.53 Aligned_cols=105 Identities=19% Similarity=0.239 Sum_probs=65.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEEC--CH-HHHHHHhcccccccccCCCCCceeEEEE----------------e
Q 023816 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVD--SG-RRALQFLGLDEEQSINGFDGLKVDLIIT----------------D 91 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~--~g-~~al~~l~~~~~~~~~~~~~~~~DlIL~----------------D 91 (276)
-|+++-||..+.-..+.+-+.....|.+-. .. +..+..+ .+..||+||+ |
T Consensus 30 ~VIlvsDn~aD~~lA~~iaellNA~Vlttpwg~ynes~~~eI-----------~~lnpd~VLIIGGp~AVs~~yE~~Lks 98 (337)
T COG2247 30 VVILVSDNEADLLLALPIAELLNAPVLTTPWGIYNESVLDEI-----------IELNPDLVLIIGGPIAVSPNYENALKS 98 (337)
T ss_pred EEEEecchHHHHHHhhHHHHHhCCeeEecCcccccHHHHHHH-----------HhhCCceEEEECCCCcCChhHHHHHHh
Confidence 577888999888887777776666666311 11 2233333 4567888882 1
Q ss_pred -----cCCCCCCHHHHHHH----HHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEE
Q 023816 92 -----YCMPGMTGYELLKK----IKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVI 162 (276)
Q Consensus 92 -----~~mp~~~G~ell~~----Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ 162 (276)
.+..|.|-+|.+.+ +++.+|+ +...+-+|+
T Consensus 99 ~GitV~RigG~nR~ETa~~v~~~~~~~yp~-----------------------------------------af~n~kvvv 137 (337)
T COG2247 99 LGITVKRIGGANRYETAEKVAKFFREDYPN-----------------------------------------AFKNVKVVV 137 (337)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHhhchh-----------------------------------------hhcCeEEEE
Confidence 13346666665444 4444441 122578888
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 163 MSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 163 ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
+.+.+..+...++++-|....+.|-
T Consensus 138 v~GwDy~~~~~e~~k~~~~p~~~~n 162 (337)
T COG2247 138 VYGWDYADALMELMKEGIVPVILKN 162 (337)
T ss_pred EeccccHHHHHHHHhcCcceeEecc
Confidence 8888887766777777877777664
No 377
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=30.09 E-value=49 Score=31.56 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=50.5
Q ss_pred eeeeccccCCCCCCCCCCCCccEEEEEeCCHHH----HHHHHHHHhhCCCEEEEEC---------CHHHHHHHhcccccc
Q 023816 9 SLRLISDEIDGFDLSPSDTEEVHVLAVDDSFVD----RKVIERLLTISSCKVTAVD---------SGRRALQFLGLDEEQ 75 (276)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~VLIVdD~~~~----~~~L~~~L~~~g~~v~~a~---------~g~~al~~l~~~~~~ 75 (276)
+++-+++++... + |+|||-|.... .+.+...|++.|+++..++ +.+++++.+
T Consensus 10 ~l~~l~~~l~~~--------g-r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~------ 74 (366)
T PF00465_consen 10 ALEELGEELKRL--------G-RVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQA------ 74 (366)
T ss_dssp GGGGHHHHHHCT--------T-EEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHH------
T ss_pred HHHHHHHHHHhc--------C-CEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHH------
Confidence 355566666654 4 99999887543 3456667777888876543 445666666
Q ss_pred cccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 76 SINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 76 ~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
+..++|+||- +.|.+-+++.|.+..
T Consensus 75 -----~~~~~D~IIa---iGGGS~~D~aK~va~ 99 (366)
T PF00465_consen 75 -----RKFGADCIIA---IGGGSVMDAAKAVAL 99 (366)
T ss_dssp -----HHTTSSEEEE---EESHHHHHHHHHHHH
T ss_pred -----HhcCCCEEEE---cCCCCcCcHHHHHHh
Confidence 5568898873 356666677777764
No 378
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=30.07 E-value=4.1e+02 Score=24.20 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=23.4
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeE
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDF 183 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~ 183 (276)
++||+..-+-...+++.+++++||+..
T Consensus 243 ~ipiia~GGI~~~~da~~~l~~GAd~V 269 (289)
T cd02810 243 DIPIIGVGGIDSGEDVLEMLMAGASAV 269 (289)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCccHh
Confidence 589998888888999999999998754
No 379
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=29.85 E-value=3.5e+02 Score=22.99 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=20.7
Q ss_pred CeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 158 IPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 158 ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
+|++ +.+.-..+.+.++++.|++.++.=
T Consensus 167 ~pi~-v~GGI~~env~~~~~~gad~iivg 194 (211)
T cd00429 167 LLIE-VDGGINLETIPLLAEAGADVLVAG 194 (211)
T ss_pred eEEE-EECCCCHHHHHHHHHcCCCEEEEC
Confidence 5654 444556688889999999988763
No 380
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=29.64 E-value=1.1e+02 Score=29.59 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=23.5
Q ss_pred CCeEE--EEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVV--IMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV--~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+||| +.-+-..++.+..+++.||+.+.+
T Consensus 203 ~iPVV~~AeGGI~TPedaa~vme~GAdgVaV 233 (293)
T PRK04180 203 RLPVVNFAAGGIATPADAALMMQLGADGVFV 233 (293)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEE
Confidence 58998 555555899999999999999864
No 381
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=29.54 E-value=1.4e+02 Score=25.91 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=28.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHh
Q 023816 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFL 69 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l 69 (276)
+|||..-.-..-..+.+.|...|++|.++....++...+
T Consensus 2 ~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~ 40 (275)
T COG0702 2 KILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAAL 40 (275)
T ss_pred eEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhh
Confidence 577777776666666666666699999876666666666
No 382
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=29.50 E-value=1.3e+02 Score=28.51 Aligned_cols=38 Identities=24% Similarity=0.103 Sum_probs=31.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHH
Q 023816 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQF 68 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~ 68 (276)
+|.|.+-++...+.+.+.++..|+.+..+++.++|+.-
T Consensus 155 ~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~ 192 (313)
T PF02423_consen 155 EVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRG 192 (313)
T ss_dssp EEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTT
T ss_pred EEEEEccChhHHHHHHHhhccccccceeccchhhhccc
Confidence 67888999988888888888788999999999988754
No 383
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=29.38 E-value=4.3e+02 Score=26.33 Aligned_cols=124 Identities=19% Similarity=0.323 Sum_probs=71.9
Q ss_pred eeeeccccCCCCCCCCCCC------CccEEEEEeCCHHHHHHHHHHHhhCC----CEEEEECCHHHHHHHhccccccccc
Q 023816 9 SLRLISDEIDGFDLSPSDT------EEVHVLAVDDSFVDRKVIERLLTISS----CKVTAVDSGRRALQFLGLDEEQSIN 78 (276)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~------~~~~VLIVdD~~~~~~~L~~~L~~~g----~~v~~a~~g~~al~~l~~~~~~~~~ 78 (276)
..|++.+-+|+.|+-..=. ..+-..+.++-....+.+...=...+ +++....+.++-++.+...
T Consensus 91 Aa~lv~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~------ 164 (358)
T KOG2335|consen 91 AARLVQPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKML------ 164 (358)
T ss_pred HHHHhhhhcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHH------
Confidence 3466666667766654222 23345666666666666665555555 3555577777777766422
Q ss_pred CCCCCceeEEEEecCCCCCCH-------HHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCccccc
Q 023816 79 GFDGLKVDLIITDYCMPGMTG-------YELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQD 151 (276)
Q Consensus 79 ~~~~~~~DlIL~D~~mp~~~G-------~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (276)
.....+++.+==.-+...| ++.++.||+..|
T Consensus 165 --e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~---------------------------------------- 202 (358)
T KOG2335|consen 165 --EDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVP---------------------------------------- 202 (358)
T ss_pred --HhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCc----------------------------------------
Confidence 2233444444333333333 688888887443
Q ss_pred ccCCCCCeEEEEecCCCHHHHHHHHh-cCCCeEEe
Q 023816 152 SSALREIPVVIMSSENILARIDRCLE-DGAEDFIV 185 (276)
Q Consensus 152 ~~~~~~ipiV~ls~~~~~~~~~~al~-~Ga~d~l~ 185 (276)
++||++=-.=...+++.+|++ .|+++.+.
T Consensus 203 -----~ipviaNGnI~~~~d~~~~~~~tG~dGVM~ 232 (358)
T KOG2335|consen 203 -----DIPVIANGNILSLEDVERCLKYTGADGVMS 232 (358)
T ss_pred -----CCcEEeeCCcCcHHHHHHHHHHhCCceEEe
Confidence 455555444445678889998 88877654
No 384
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=29.37 E-value=4.4e+02 Score=23.96 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=33.5
Q ss_pred HHHHHHHHhhCCCEEEE-------ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 42 RKVIERLLTISSCKVTA-------VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 42 ~~~L~~~L~~~g~~v~~-------a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
.+.+++.++..|.++.. ..+....++.+ ...+||.|++-. ..-.+..+++.+++.
T Consensus 150 ~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~i-----------~~~~pdaV~~~~--~~~~a~~~~~~~~~~ 211 (341)
T cd06341 150 AALLARSLAAAGVSVAGIVVITATAPDPTPQAQQA-----------AAAGADAIITVL--DAAVCASVLKAVRAA 211 (341)
T ss_pred HHHHHHHHHHcCCccccccccCCCCCCHHHHHHHH-----------HhcCCCEEEEec--ChHHHHHHHHHHHHc
Confidence 44466777777765543 13555666666 345688887643 233567777777764
No 385
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=29.28 E-value=5.9e+02 Score=25.80 Aligned_cols=71 Identities=13% Similarity=-0.003 Sum_probs=40.5
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC--CHHHHH
Q 023816 29 EVHVLAVDDSFV---DRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM--TGYELL 103 (276)
Q Consensus 29 ~~~VLIVdD~~~---~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~--~G~ell 103 (276)
+.+|.+|+-|+. ..+.++.+-+..|+.+..+.+..+..+.+.... ....+|+||+|. +|. .--+.+
T Consensus 234 g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~-------~~~~~D~VLIDT--AGr~~~d~~~l 304 (407)
T PRK12726 234 NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT-------YVNCVDHILIDT--VGRNYLAEESV 304 (407)
T ss_pred CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH-------hcCCCCEEEEEC--CCCCccCHHHH
Confidence 356777775543 245666666777877766666655433331100 123589999997 333 223455
Q ss_pred HHHHh
Q 023816 104 KKIKV 108 (276)
Q Consensus 104 ~~Ir~ 108 (276)
.+++.
T Consensus 305 ~EL~~ 309 (407)
T PRK12726 305 SEISA 309 (407)
T ss_pred HHHHH
Confidence 55554
No 386
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=29.28 E-value=3e+02 Score=24.57 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=24.2
Q ss_pred CCeEEEEecCCCHHHHHHHHhc-CCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLED-GAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~-Ga~d~l~ 185 (276)
++|+++.-+-...+++.++++. |++..+.
T Consensus 193 ~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 193 NIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred CCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 5888888777889999999987 8988766
No 387
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=29.24 E-value=1.9e+02 Score=31.61 Aligned_cols=41 Identities=2% Similarity=0.088 Sum_probs=20.2
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHH
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDY 199 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~ 199 (276)
.+.+|++|. ..+.+...++.-+.-|-.++++.+++.+.+.+
T Consensus 150 ~~~fIl~tt--~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~ 190 (824)
T PRK07764 150 HLKFIFATT--EPDKVIGTIRSRTHHYPFRLVPPEVMRGYLER 190 (824)
T ss_pred CeEEEEEeC--ChhhhhHHHHhheeEEEeeCCCHHHHHHHHHH
Confidence 344444442 22234445555556666666666665444433
No 388
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=29.20 E-value=3e+02 Score=22.08 Aligned_cols=44 Identities=20% Similarity=0.440 Sum_probs=31.5
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDV 204 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~~~ 204 (276)
.+|+|+ +. .....+.+..|..+++..+.+..++...+.++....
T Consensus 116 g~pvI~-~~---~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 116 GCPVIA-SD---IGGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp T-EEEE-ES---STHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred ccceee-cc---ccCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 677774 33 234457778888999999999999977777766554
No 389
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=29.20 E-value=2.8e+02 Score=27.40 Aligned_cols=30 Identities=13% Similarity=0.249 Sum_probs=26.4
Q ss_pred CCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 156 REIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 156 ~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
+.+|||+--+-....++.+|+..||+....
T Consensus 254 r~vpVIAdGGI~tg~di~kAlAlGAdaV~i 283 (369)
T TIGR01304 254 RYVHVIADGGIETSGDLVKAIACGADAVVL 283 (369)
T ss_pred CCceEEEeCCCCCHHHHHHHHHcCCCEeee
Confidence 368999988889999999999999998765
No 390
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=29.17 E-value=1.6e+02 Score=26.61 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=17.2
Q ss_pred CCHHHHHHHHhcCCCeEEeCCCCHHHH
Q 023816 167 NILARIDRCLEDGAEDFIVKPVKLSDV 193 (276)
Q Consensus 167 ~~~~~~~~al~~Ga~d~l~KPv~~~~L 193 (276)
-+.+..++|+++|| +|++-|.--.++
T Consensus 68 ~~~e~a~~a~~aGA-~FivSP~~~~~v 93 (196)
T PF01081_consen 68 LTAEQAEAAIAAGA-QFIVSPGFDPEV 93 (196)
T ss_dssp -SHHHHHHHHHHT--SEEEESS--HHH
T ss_pred cCHHHHHHHHHcCC-CEEECCCCCHHH
Confidence 45778899999999 577777666665
No 391
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=29.14 E-value=4.7e+02 Score=25.09 Aligned_cols=44 Identities=9% Similarity=0.184 Sum_probs=29.8
Q ss_pred CCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC-CHHHHHHHHHHHHH
Q 023816 155 LREIPVVIMSSENILARIDRCLEDGAEDFIVKPV-KLSDVKRIKDYLTR 202 (276)
Q Consensus 155 ~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv-~~~~L~~~~~~l~~ 202 (276)
...+|||+ |... ...+.+..|-++++..+- +.+++.+.+..+..
T Consensus 332 a~G~PVIa-s~vg---g~~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~ 376 (407)
T cd04946 332 SFGIPVIA-TNVG---GTPEIVDNGGNGLLLSKDPTPNELVSSLSKFID 376 (407)
T ss_pred HcCCCEEe-CCCC---CcHHHhcCCCcEEEeCCCCCHHHHHHHHHHHHh
Confidence 34788876 3322 244677788888988764 78888777777654
No 392
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=29.13 E-value=1.9e+02 Score=24.94 Aligned_cols=82 Identities=12% Similarity=0.183 Sum_probs=54.3
Q ss_pred ccCCCCCCCCC-----CCCccEEEEEeCCHHHHHHHHHHHhhC--CCEEEEECC-------HHHHHHHhcccccccccCC
Q 023816 15 DEIDGFDLSPS-----DTEEVHVLAVDDSFVDRKVIERLLTIS--SCKVTAVDS-------GRRALQFLGLDEEQSINGF 80 (276)
Q Consensus 15 ~~~~~~~~~~~-----~~~~~~VLIVdD~~~~~~~L~~~L~~~--g~~v~~a~~-------g~~al~~l~~~~~~~~~~~ 80 (276)
+.+.|.|+-+. .....+|.++...+...+.+.+.|++. |.++....+ ..+.++.+
T Consensus 27 ~r~~g~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I----------- 95 (171)
T cd06533 27 ERVTGSDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERI----------- 95 (171)
T ss_pred cccCcHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHH-----------
Confidence 34555555442 344689999999998888888888755 667665321 12235555
Q ss_pred CCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 81 DGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 81 ~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
.+.+||+|++-+-+|... .++.+.+..
T Consensus 96 ~~~~pdiv~vglG~PkQE--~~~~~~~~~ 122 (171)
T cd06533 96 NASGADILFVGLGAPKQE--LWIARHKDR 122 (171)
T ss_pred HHcCCCEEEEECCCCHHH--HHHHHHHHH
Confidence 677899999999888654 355566653
No 393
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=29.07 E-value=3.7e+02 Score=23.00 Aligned_cols=50 Identities=18% Similarity=0.105 Sum_probs=33.6
Q ss_pred ccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHhhh
Q 023816 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDVN 205 (276)
Q Consensus 152 ~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~~~~ 205 (276)
+....++|||+.-. . ...+.++.|-.+|+.++-+.+++.+++..+.....
T Consensus 282 Ea~~~G~PvI~~~~-~---~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~ 331 (353)
T cd03811 282 EAMALGTPVVATDC-P---GPREILEDGENGLLVPVGDEAALAAAALALLDLLL 331 (353)
T ss_pred HHHHhCCCEEEcCC-C---ChHHHhcCCCceEEECCCCHHHHHHHHHHHHhccC
Confidence 33444788875322 2 34467788999999999999998666666555433
No 394
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=29.06 E-value=2.4e+02 Score=26.35 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=33.8
Q ss_pred eEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 159 PVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 159 piV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
..|.++.++ .+...+|++.|+|-...-|+..+++++++..+..
T Consensus 182 ~~I~vev~t-~eea~~A~~~gaD~I~ld~~~~e~l~~~v~~i~~ 224 (269)
T cd01568 182 KKIEVEVET-LEEAEEALEAGADIIMLDNMSPEELKEAVKLLKG 224 (269)
T ss_pred CeEEEecCC-HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhcc
Confidence 356666654 5778889999998888999999999888776643
No 395
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=29.04 E-value=2.4e+02 Score=26.37 Aligned_cols=93 Identities=18% Similarity=0.197 Sum_probs=56.3
Q ss_pred EEEEEeCCHHHHHH----HHHHHhhCC--CEE-EEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHH
Q 023816 31 HVLAVDDSFVDRKV----IERLLTISS--CKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELL 103 (276)
Q Consensus 31 ~VLIVdD~~~~~~~----L~~~L~~~g--~~v-~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell 103 (276)
-|||.|++...... +++.=+..+ ..+ ..+.+.+|+.+.+ ...+|.|.+|-.-| +-+
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~------------~~gaDyI~ld~~~~-----e~l 212 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAA------------EAGADIIMLDNMKP-----EEI 212 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHH------------HcCCCEEEECCCCH-----HHH
Confidence 46777765443322 222223344 333 3488999988776 34689999986433 455
Q ss_pred HHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeE
Q 023816 104 KKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDF 183 (276)
Q Consensus 104 ~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~ 183 (276)
+++.+.-. ..+| |+.++.-..+.+.+..+.|++.+
T Consensus 213 k~~v~~~~--------------------------------------------~~ip-i~AsGGI~~~ni~~~a~~Gvd~I 247 (265)
T TIGR00078 213 KEAVQLLK--------------------------------------------GRVL-LEASGGITLDNLEEYAETGVDVI 247 (265)
T ss_pred HHHHHHhc--------------------------------------------CCCc-EEEECCCCHHHHHHHHHcCCCEE
Confidence 55543211 0255 45577778888999999999776
Q ss_pred Ee
Q 023816 184 IV 185 (276)
Q Consensus 184 l~ 185 (276)
-+
T Consensus 248 sv 249 (265)
T TIGR00078 248 SS 249 (265)
T ss_pred Ee
Confidence 44
No 396
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=28.95 E-value=2.7e+02 Score=24.86 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=38.0
Q ss_pred CCccEEEEE-eCCHHHHHHHHHHHhhCCCEEEEE-------------------CCHHHHHHHhcccccccccCCCCCcee
Q 023816 27 TEEVHVLAV-DDSFVDRKVIERLLTISSCKVTAV-------------------DSGRRALQFLGLDEEQSINGFDGLKVD 86 (276)
Q Consensus 27 ~~~~~VLIV-dD~~~~~~~L~~~L~~~g~~v~~a-------------------~~g~~al~~l~~~~~~~~~~~~~~~~D 86 (276)
.-+++|.+. |+.+..++.++.+ +..|..+..+ .+-++-++.+. .-+.-.
T Consensus 47 r~pV~i~~~~d~~~~~~~i~~~~-e~~Gi~I~~~dg~~~~~~~~vvLIGhiv~tdiqDTId~In----------~ig~A~ 115 (170)
T COG2061 47 RVPVQIVFEGDREDKDAKIIRLL-EEEGIIIIRFDGARLREKTDVVLIGHIVHTDIQDTIDRIN----------SIGGAE 115 (170)
T ss_pred ceeEEEEEEecccHHHHHHHHHH-HhCCcEEEEecCcCcceeEeEEEEEeeecCcHHHHHHHhh----------ccCCEE
Confidence 345666555 4477777777766 7777666544 24455555541 111234
Q ss_pred EEEEecCCCCCCHH
Q 023816 87 LIITDYCMPGMTGY 100 (276)
Q Consensus 87 lIL~D~~mp~~~G~ 100 (276)
++=+|+.||+.+|.
T Consensus 116 vvDl~L~Mp~~e~~ 129 (170)
T COG2061 116 VVDLSLSMPGIEGE 129 (170)
T ss_pred EEEEEeecCCCCCC
Confidence 55589999987763
No 397
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=28.91 E-value=4.8e+02 Score=24.33 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=25.7
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
++|||+--+-....++.+++..||+....=
T Consensus 227 ~ipvia~GGI~~~~d~~kal~lGAd~V~ig 256 (299)
T cd02809 227 RIEVLLDGGIRRGTDVLKALALGADAVLIG 256 (299)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 589888888889999999999999987553
No 398
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=28.78 E-value=4.4e+02 Score=23.99 Aligned_cols=56 Identities=11% Similarity=0.159 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhCCCEEEE---E----CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 41 DRKVIERLLTISSCKVTA---V----DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 41 ~~~~L~~~L~~~g~~v~~---a----~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
..+.+++.++..|.+++. . .+....++.+ ...+||+|++... ..+...+++.+++.
T Consensus 148 ~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~l-----------~~~~pd~v~~~~~--~~~~~~~~~~~~~~ 210 (333)
T cd06358 148 SLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERI-----------AASGADAVLSTLV--GQDAVAFNRQFAAA 210 (333)
T ss_pred HHHHHHHHHHHcCCEEeeeeeecCChHHHHHHHHHH-----------HHcCCCEEEEeCC--CCchHHHHHHHHHc
Confidence 345677788888988764 2 2344556666 5567999988754 34556788888863
No 399
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=28.58 E-value=3.3e+02 Score=25.07 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=47.0
Q ss_pred ccEEEEE------eCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHH
Q 023816 29 EVHVLAV------DDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYEL 102 (276)
Q Consensus 29 ~~~VLIV------dD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~el 102 (276)
.-+|+.| +|.....+..++.++..|+++......++.++.+ ...|+|++ ++.|...+
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l-------------~~ad~I~v----~GGnt~~l 93 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAI-------------ENAEAIFV----GGGNTFQL 93 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHH-------------hcCCEEEE----CCccHHHH
Confidence 4466666 4445555678888999999999888777666665 24577764 59999999
Q ss_pred HHHHHhh
Q 023816 103 LKKIKVT 109 (276)
Q Consensus 103 l~~Ir~~ 109 (276)
++.+++.
T Consensus 94 ~~~l~~~ 100 (233)
T PRK05282 94 LKQLYER 100 (233)
T ss_pred HHHHHHC
Confidence 9999874
No 400
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=28.53 E-value=1.6e+02 Score=30.11 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=41.6
Q ss_pred CCCceeEEEEecC-CCCCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCe
Q 023816 81 DGLKVDLIITDYC-MPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIP 159 (276)
Q Consensus 81 ~~~~~DlIL~D~~-mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 159 (276)
.+...|.|.+|.- =...+-.+++++||+..| +++
T Consensus 236 v~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p---------------------------------------------~~~ 270 (479)
T PRK07807 236 LEAGVDVLVVDTAHGHQEKMLEALRAVRALDP---------------------------------------------GVP 270 (479)
T ss_pred HHhCCCEEEEeccCCccHHHHHHHHHHHHHCC---------------------------------------------CCe
Confidence 3456899999973 345677889999998777 566
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 160 VVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 160 iV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
|++ -.-...+....++++|||..-
T Consensus 271 v~a-gnv~t~~~a~~l~~aGad~v~ 294 (479)
T PRK07807 271 IVA-GNVVTAEGTRDLVEAGADIVK 294 (479)
T ss_pred EEe-eccCCHHHHHHHHHcCCCEEE
Confidence 654 122456677788999998754
No 401
>PLN02535 glycolate oxidase
Probab=28.45 E-value=5.4e+02 Score=25.44 Aligned_cols=96 Identities=21% Similarity=0.235 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHhhCCCEEEE--ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCC-----CCCHHHHHHHHHhh
Q 023816 37 DSFVDRKVIERLLTISSCKVTA--VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-----GMTGYELLKKIKVT 109 (276)
Q Consensus 37 D~~~~~~~L~~~L~~~g~~v~~--a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp-----~~~G~ell~~Ir~~ 109 (276)
|.....+.++.+-+..+..+.. +.+.++|.... ...+|.|++.=+-. +...++++.++++.
T Consensus 207 ~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~a~------------~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~a 274 (364)
T PLN02535 207 DASLSWKDIEWLRSITNLPILIKGVLTREDAIKAV------------EVGVAGIIVSNHGARQLDYSPATISVLEEVVQA 274 (364)
T ss_pred CCCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHH------------hcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHH
Confidence 3344566677666666655554 57888876655 44677776542211 11235666666532
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe-CCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV-KPV 188 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~-KPv 188 (276)
. ...+|||+-.+-....++.+|+..||+.... .|+
T Consensus 275 v--------------------------------------------~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~ 310 (364)
T PLN02535 275 V--------------------------------------------GGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPV 310 (364)
T ss_pred H--------------------------------------------hcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 1 1158999888888999999999999996543 343
No 402
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=28.39 E-value=4.4e+02 Score=23.74 Aligned_cols=29 Identities=17% Similarity=0.398 Sum_probs=24.7
Q ss_pred CCeEEEEecCCCHHHHHHHHhc-CCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLED-GAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~-Ga~d~l~ 185 (276)
++||++--+-.+.++..++++. |++..+.
T Consensus 197 ~ipvia~GGv~s~~d~~~~~~~~G~~gviv 226 (253)
T PRK02083 197 NVPVIASGGAGNLEHFVEAFTEGGADAALA 226 (253)
T ss_pred CCCEEEECCCCCHHHHHHHHHhCCccEEeE
Confidence 5899988888889999999975 9988876
No 403
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=28.23 E-value=1.1e+02 Score=30.06 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=44.9
Q ss_pred cEEEEEeCCHHHH----HHHHHHHhhCCCEEEEEC---------CHHHHHHHhcccccccccCCCCCceeEEEEecCCCC
Q 023816 30 VHVLAVDDSFVDR----KVIERLLTISSCKVTAVD---------SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG 96 (276)
Q Consensus 30 ~~VLIVdD~~~~~----~~L~~~L~~~g~~v~~a~---------~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~ 96 (276)
=++|||-|..... +.+.+.|+..|+++..++ ..+++++.+ ++.++|+|| -+.|
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~-----------r~~~~D~Ii---avGG 115 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQL-----------RESGCDGVI---AFGG 115 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHH-----------HhcCcCEEE---EeCC
Confidence 3788887765432 557888888898876653 244566666 677899998 3567
Q ss_pred CCHHHHHHHHHh
Q 023816 97 MTGYELLKKIKV 108 (276)
Q Consensus 97 ~~G~ell~~Ir~ 108 (276)
.+-++..|.+..
T Consensus 116 GS~iD~AKaia~ 127 (395)
T PRK15454 116 GSVLDAAKAVAL 127 (395)
T ss_pred hHHHHHHHHHHH
Confidence 777788877754
No 404
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=27.90 E-value=1.2e+02 Score=29.96 Aligned_cols=52 Identities=27% Similarity=0.280 Sum_probs=37.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
.+|..+|-++...+.+++-+++.|+.+.. ..++.+..... ....||+|++|.
T Consensus 269 ~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~-----------~~~~fD~Vl~D~ 321 (427)
T PRK10901 269 AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWW-----------DGQPFDRILLDA 321 (427)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhc-----------ccCCCCEEEECC
Confidence 58999999999999999999988875443 33443322211 344699999996
No 405
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=27.86 E-value=5.6e+02 Score=24.84 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=25.4
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++||++..+-....++.+++..||+.+-.
T Consensus 261 ~ipvia~GGI~~~~dv~k~l~~GAd~v~i 289 (352)
T PRK05437 261 DLPIIASGGIRNGLDIAKALALGADAVGM 289 (352)
T ss_pred CCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 68999888888999999999999987743
No 406
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=27.81 E-value=5.6e+02 Score=24.67 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=28.8
Q ss_pred CCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 023816 156 REIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 156 ~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~~ 203 (276)
..+|||+. ... ...+.++.|-++++.. +.+++.+.+..+..+
T Consensus 340 ~G~PVI~s-~~~---~~~eiv~~~~~G~lv~--d~~~la~~i~~ll~~ 381 (415)
T cd03816 340 CGLPVCAL-DFK---CIDELVKHGENGLVFG--DSEELAEQLIDLLSN 381 (415)
T ss_pred cCCCEEEe-CCC---CHHHHhcCCCCEEEEC--CHHHHHHHHHHHHhc
Confidence 37898873 332 3446777888899984 788887777666543
No 407
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=27.69 E-value=3.7e+02 Score=23.08 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=13.8
Q ss_pred HHHHHHHHhhCCCEEEEECC
Q 023816 42 RKVIERLLTISSCKVTAVDS 61 (276)
Q Consensus 42 ~~~L~~~L~~~g~~v~~a~~ 61 (276)
.+.+++.++..||.+....+
T Consensus 18 ~~~i~~~~~~~g~~~~~~~~ 37 (268)
T cd06273 18 IQAFQETLAAHGYTLLVASS 37 (268)
T ss_pred HHHHHHHHHHCCCEEEEecC
Confidence 34567777788888877543
No 408
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.41 E-value=3.2e+02 Score=25.90 Aligned_cols=65 Identities=15% Similarity=0.104 Sum_probs=43.7
Q ss_pred ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhcccc
Q 023816 59 VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFC 138 (276)
Q Consensus 59 a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (276)
+.+.+|+.+.+ ...+|.|.+|-. +.|.++++.+..+
T Consensus 196 v~tleea~eA~------------~~gaD~I~LD~~-----~~e~l~~~v~~~~--------------------------- 231 (277)
T PRK05742 196 VESLDELRQAL------------AAGADIVMLDEL-----SLDDMREAVRLTA--------------------------- 231 (277)
T ss_pred eCCHHHHHHHH------------HcCCCEEEECCC-----CHHHHHHHHHHhC---------------------------
Confidence 78888888776 346899998832 5555666554211
Q ss_pred CCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 139 FPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
..+| +..++.-..+.+.+..+.|++.+-+
T Consensus 232 -----------------~~i~-leAsGGIt~~ni~~~a~tGvD~Isv 260 (277)
T PRK05742 232 -----------------GRAK-LEASGGINESTLRVIAETGVDYISI 260 (277)
T ss_pred -----------------CCCc-EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 1455 4556667788888999999976543
No 409
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=27.36 E-value=1.2e+02 Score=29.62 Aligned_cols=65 Identities=18% Similarity=0.294 Sum_probs=44.6
Q ss_pred cEEEEEeCCHH----HHHHHHHHHhhCCCEEEEEC---------CHHHHHHHhcccccccccCCCCCceeEEEEecCCCC
Q 023816 30 VHVLAVDDSFV----DRKVIERLLTISSCKVTAVD---------SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG 96 (276)
Q Consensus 30 ~~VLIVdD~~~----~~~~L~~~L~~~g~~v~~a~---------~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~ 96 (276)
-+||||-|..+ ..+.+.+.|+..|+++..++ +.+++++.+ ++.++|+|| -+.|
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~-----------~~~~~D~II---aiGG 87 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELM-----------NSFKPDTII---ALGG 87 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHH-----------HhcCCCEEE---EeCC
Confidence 47899988654 23457778888888776653 344555555 566789888 3457
Q ss_pred CCHHHHHHHHHh
Q 023816 97 MTGYELLKKIKV 108 (276)
Q Consensus 97 ~~G~ell~~Ir~ 108 (276)
.+-+++.|.+..
T Consensus 88 GS~iD~AK~iA~ 99 (398)
T cd08178 88 GSPMDAAKIMWL 99 (398)
T ss_pred ccHHHHHHHHHH
Confidence 777888888763
No 410
>PRK07589 ornithine cyclodeaminase; Validated
Probab=27.28 E-value=1.8e+02 Score=28.33 Aligned_cols=40 Identities=15% Similarity=0.021 Sum_probs=32.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFL 69 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l 69 (276)
-+|.|.+-++..++.+.+.++..|+++..+.+.++|++..
T Consensus 155 ~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~A 194 (346)
T PRK07589 155 EEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGA 194 (346)
T ss_pred eEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcC
Confidence 4678888888888888888887788888899988888654
No 411
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=27.23 E-value=4.3e+02 Score=23.16 Aligned_cols=71 Identities=18% Similarity=0.150 Sum_probs=42.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhcccccccccCCCCCc-eeEEEEec-------------
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSC--KVT-AVDSGRRALQFLGLDEEQSINGFDGLK-VDLIITDY------------- 92 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~--~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~-~DlIL~D~------------- 92 (276)
-+|..||=|+...+.++.=.+..|+ ++. ...+..+.++.+ .... +|+|++|-
T Consensus 22 ~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~-----------~~~~~~D~vFlSPPWGGp~Y~~~~~f 90 (163)
T PF09445_consen 22 DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRL-----------KSNKIFDVVFLSPPWGGPSYSKKDVF 90 (163)
T ss_dssp -EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-----------------SEEEE---BSSGGGGGSSSB
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhc-----------cccccccEEEECCCCCCccccccCcc
Confidence 3799999999999999999999885 344 366666654443 2222 79999653
Q ss_pred ----CCCCCCHHHHHHHHHhhCC
Q 023816 93 ----CMPGMTGYELLKKIKVTTP 111 (276)
Q Consensus 93 ----~mp~~~G~ell~~Ir~~~p 111 (276)
.|...++.++++..++..+
T Consensus 91 dL~~~~~p~~~~~l~~~~~~~t~ 113 (163)
T PF09445_consen 91 DLEKSMQPFNLEDLLKAARKITP 113 (163)
T ss_dssp -TTTSSSS--HHHHHHHHHHH-S
T ss_pred CHHHccCCCCHHHHHHHHHhhCC
Confidence 4445567777777776554
No 412
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=27.20 E-value=2.3e+02 Score=24.02 Aligned_cols=61 Identities=20% Similarity=0.168 Sum_probs=36.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecC
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC 93 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~ 93 (276)
...+|||...+-.....+.+.|...|++|.......+.++.+....+. .+.++..+.+|+.
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~ 64 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRA-----AGGEARVLVFDVS 64 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHh-----cCCceEEEEccCC
Confidence 345899998887777777777777899987755433333332111110 2334666667765
No 413
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=27.19 E-value=2.7e+02 Score=25.81 Aligned_cols=58 Identities=14% Similarity=0.272 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhCCCEEEE---E----CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhC
Q 023816 40 VDRKVIERLLTISSCKVTA---V----DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTT 110 (276)
Q Consensus 40 ~~~~~L~~~L~~~g~~v~~---a----~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~ 110 (276)
...+.++..++..|.+++. . .+....+.++ ...++|+|++= ..+-+...+++.+++..
T Consensus 148 ~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~l-----------~~~~pd~v~~~--~~~~~~~~~~~~~~~~G 212 (348)
T cd06355 148 TANKILKAQLESLGGEVVGEEYLPLGHTDFQSIINKI-----------KAAKPDVVVST--VNGDSNVAFFKQLKAAG 212 (348)
T ss_pred HHHHHHHHHHHHcCCeEEeeEEecCChhhHHHHHHHH-----------HHhCCCEEEEe--ccCCchHHHHHHHHHcC
Confidence 4556677788889988765 2 2344555665 56679999873 34456778888888753
No 414
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.99 E-value=3.1e+02 Score=26.30 Aligned_cols=43 Identities=16% Similarity=0.311 Sum_probs=34.0
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 201 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~ 201 (276)
+.+|.+-. ...+...+|+++|++-.+.--++.+++++.+..+.
T Consensus 199 ~~kIeVEv--~tl~ea~eal~~gaDiI~LDnm~~e~vk~av~~~~ 241 (289)
T PRK07896 199 DLPCEVEV--DSLEQLDEVLAEGAELVLLDNFPVWQTQEAVQRRD 241 (289)
T ss_pred CCCEEEEc--CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 45555444 45668889999999999999999999988887654
No 415
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=26.92 E-value=81 Score=28.23 Aligned_cols=33 Identities=12% Similarity=0.017 Sum_probs=26.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCH
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSG 62 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g 62 (276)
++||++|.....-..+.+.|...|+++..+...
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~ 33 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRND 33 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECC
Confidence 479999987777777889999999988876543
No 416
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=26.92 E-value=2.4e+02 Score=28.04 Aligned_cols=66 Identities=17% Similarity=0.090 Sum_probs=47.7
Q ss_pred cEEEEEeCCH----HHHHHHHHHHhhCCCEEEEEC---------CHHHHHHHhcccccccccCCCCCceeEEEEecCCCC
Q 023816 30 VHVLAVDDSF----VDRKVIERLLTISSCKVTAVD---------SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG 96 (276)
Q Consensus 30 ~~VLIVdD~~----~~~~~L~~~L~~~g~~v~~a~---------~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~ 96 (276)
=|+|||-|.. -..+.+.+.|+..|.++..++ +.+++++.+ ++.++|.|| .+.|
T Consensus 30 ~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~-----------~~~~~D~iI---alGG 95 (377)
T COG1454 30 KRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVA-----------REFGPDTII---ALGG 95 (377)
T ss_pred CceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHH-----------HhcCCCEEE---EeCC
Confidence 4799999885 244566778888886655533 445566666 677899998 4678
Q ss_pred CCHHHHHHHHHhh
Q 023816 97 MTGYELLKKIKVT 109 (276)
Q Consensus 97 ~~G~ell~~Ir~~ 109 (276)
.+.+++.|.+.-.
T Consensus 96 GS~~D~AK~i~~~ 108 (377)
T COG1454 96 GSVIDAAKAIALL 108 (377)
T ss_pred ccHHHHHHHHHHH
Confidence 8899999988753
No 417
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=26.78 E-value=3e+02 Score=25.59 Aligned_cols=62 Identities=10% Similarity=0.060 Sum_probs=39.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCC----EEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHH-HHHHH
Q 023816 31 HVLAVDDSFVDRKVIERLLTISSC----KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGY-ELLKK 105 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g~----~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~-ell~~ 105 (276)
+++.|-++...+....+.|...|. ++...+..++++..+ ...|.+++|... .|-. ++++.
T Consensus 71 R~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~-------------~~iDF~vVDc~~--~d~~~~vl~~ 135 (218)
T PF07279_consen 71 RHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL-------------KGIDFVVVDCKR--EDFAARVLRA 135 (218)
T ss_pred eEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc-------------cCCCEEEEeCCc--hhHHHHHHHH
Confidence 444455555567777777776664 334445567777665 358999999873 4445 67776
Q ss_pred HH
Q 023816 106 IK 107 (276)
Q Consensus 106 Ir 107 (276)
++
T Consensus 136 ~~ 137 (218)
T PF07279_consen 136 AK 137 (218)
T ss_pred hc
Confidence 66
No 418
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=26.44 E-value=3.8e+02 Score=25.50 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=41.6
Q ss_pred cEEEEEeCCHHH---HHHHHHHHhhCCCEEEEEC---------CHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC
Q 023816 30 VHVLAVDDSFVD---RKVIERLLTISSCKVTAVD---------SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM 97 (276)
Q Consensus 30 ~~VLIVdD~~~~---~~~L~~~L~~~g~~v~~a~---------~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~ 97 (276)
-|+|||-|.... .+.+.+.|+..|+++..+. +.+++.+.. +..++|+|| -+.|.
T Consensus 23 ~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~-----------~~~~~d~ii---avGGG 88 (345)
T cd08171 23 KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNP-----------AVQEADMIF---AVGGG 88 (345)
T ss_pred CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHH-----------hhcCCCEEE---EeCCc
Confidence 478999887543 3456667777777654322 223344433 556789988 34677
Q ss_pred CHHHHHHHHHh
Q 023816 98 TGYELLKKIKV 108 (276)
Q Consensus 98 ~G~ell~~Ir~ 108 (276)
+-+++.|.+..
T Consensus 89 s~~D~aK~ia~ 99 (345)
T cd08171 89 KAIDTVKVLAD 99 (345)
T ss_pred HHHHHHHHHHH
Confidence 77888888864
No 419
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.43 E-value=2.6e+02 Score=26.52 Aligned_cols=43 Identities=7% Similarity=0.227 Sum_probs=33.9
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 200 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l 200 (276)
+-.+|-++.++. +...+|.+.|+|-....++..+.+++++..+
T Consensus 187 ~~~~Igvsv~tl-eea~~A~~~gaDyI~lD~~~~e~l~~~~~~~ 229 (277)
T PRK08072 187 HMVKIEVETETE-EQVREAVAAGADIIMFDNRTPDEIREFVKLV 229 (277)
T ss_pred CCCEEEEEeCCH-HHHHHHHHcCCCEEEECCCCHHHHHHHHHhc
Confidence 345677887654 6678899999999899899999998877654
No 420
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=26.42 E-value=3.6e+02 Score=22.01 Aligned_cols=70 Identities=10% Similarity=0.104 Sum_probs=37.8
Q ss_pred EEEEeCCHHHH--HHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 32 VLAVDDSFVDR--KVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 32 VLIVdD~~~~~--~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
|+++.|+.... ..+++.+-..-..-....+..++++.+..... ....+|+|++=+---+....+-+++|.
T Consensus 2 v~~~GDSv~~~~~~~~~~~~p~~~i~a~~g~~~~~~~~~l~~~~~------~~~~~d~vvi~lGtNd~~~~~nl~~ii 73 (150)
T cd01840 2 ITAIGDSVMLDSSPALQEIFPNIQIDAKVGRQMSEAPDLIRQLKD------SGKLRKTVVIGLGTNGPFTKDQLDELL 73 (150)
T ss_pred eeEEeehHHHchHHHHHHHCCCCEEEeeecccHHHHHHHHHHHHH------cCCCCCeEEEEecCCCCCCHHHHHHHH
Confidence 67788887665 45555554332222234566677776632211 234689998766433333334444444
No 421
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=26.36 E-value=2.7e+02 Score=26.62 Aligned_cols=66 Identities=18% Similarity=0.329 Sum_probs=44.9
Q ss_pred CCHHHHHHHhcccccccccCCCCCceeEEEEec--------CCCCCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhh
Q 023816 60 DSGRRALQFLGLDEEQSINGFDGLKVDLIITDY--------CMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLF 131 (276)
Q Consensus 60 ~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~--------~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~ 131 (276)
++.++|.+++ +...+|.+=.-+ .-|..| ++.+++|++..
T Consensus 155 T~peea~~Fv-----------~~TgvD~LAvaiGt~HG~Y~~~p~Ld-fd~l~~I~~~~--------------------- 201 (286)
T PRK12738 155 TDPQEAKRFV-----------ELTGVDSLAVAIGTAHGLYSKTPKID-FQRLAEIREVV--------------------- 201 (286)
T ss_pred CCHHHHHHHH-----------HHhCCCEEEeccCcccCCCCCCCcCC-HHHHHHHHHHh---------------------
Confidence 3556666666 556777766655 235555 78999998643
Q ss_pred hhhccccCCcCCCCCcccccccCCCCCeEEEEecCC-CHHHHHHHHhcCCCeE
Q 023816 132 ILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSEN-ILARIDRCLEDGAEDF 183 (276)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~-~~~~~~~al~~Ga~d~ 183 (276)
++|+|+--++. ..+.+++|.+.|+.-+
T Consensus 202 -------------------------~vPLVLHGgSG~~~e~~~kai~~GI~Ki 229 (286)
T PRK12738 202 -------------------------DVPLVLHGASDVPDEFVRRTIELGVTKV 229 (286)
T ss_pred -------------------------CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 47877764444 4667888999998655
No 422
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=26.35 E-value=3.8e+02 Score=22.82 Aligned_cols=55 Identities=13% Similarity=0.051 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhCCCEEEEECC---HH---HHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 41 DRKVIERLLTISSCKVTAVDS---GR---RALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 41 ~~~~L~~~L~~~g~~v~~a~~---g~---~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
..+.+++.++..|+.+..... .. ++++.+ ...++|-||+...-+. ..+.++++++
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l-----------~~~~vdgiii~~~~~~--~~~~~~~~~~ 77 (266)
T cd06282 17 CVQGIQEEARAAGYSLLLATTDYDAEREADAVETL-----------LRQRVDGLILTVADAA--TSPALDLLDA 77 (266)
T ss_pred HHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHH-----------HhcCCCEEEEecCCCC--chHHHHHHhh
Confidence 334566777788998877543 22 333343 3457888887543332 2345566654
No 423
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=26.31 E-value=4.2e+02 Score=25.96 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC----CCHHHHHHHHHhhCC
Q 023816 38 SFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG----MTGYELLKKIKVTTP 111 (276)
Q Consensus 38 ~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~----~~G~ell~~Ir~~~p 111 (276)
|...-+.|...|...||+.+. .....|||++.-|--- ...++.++++++..+
T Consensus 12 N~~ds~~~~~~l~~~g~~~~~----------------------~~~~aD~v~intC~v~~~a~~~~~~~i~~~~~~~~ 67 (429)
T TIGR00089 12 NEADSEIMAGLLKEAGYEVTD----------------------DPEEADVIIINTCAVREKAEQKVRSRLGELAKLKK 67 (429)
T ss_pred cHHHHHHHHHHHHHCcCEECC----------------------CcccCCEEEEecceeechHHHHHHHHHHHHHHhCc
Confidence 556667777788777876551 1235799998744322 234566666665443
No 424
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=26.29 E-value=5.6e+02 Score=24.22 Aligned_cols=77 Identities=18% Similarity=0.178 Sum_probs=52.1
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHH-HHH
Q 023816 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYE-LLK 104 (276)
Q Consensus 26 ~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~e-ll~ 104 (276)
.+..-++||-.-..-.-+.+.+.|.+.|++++.+.--++-|..+..+-+.. -+.+++++-+|+. +-+..+ +..
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~----~~v~v~vi~~DLs--~~~~~~~l~~ 76 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDK----TGVEVEVIPADLS--DPEALERLED 76 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHh----hCceEEEEECcCC--ChhHHHHHHH
Confidence 455668899999999999999999999999998766666666664333311 1335667777764 334444 444
Q ss_pred HHHh
Q 023816 105 KIKV 108 (276)
Q Consensus 105 ~Ir~ 108 (276)
+++.
T Consensus 77 ~l~~ 80 (265)
T COG0300 77 ELKE 80 (265)
T ss_pred HHHh
Confidence 5664
No 425
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=26.24 E-value=3.4e+02 Score=26.17 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=30.7
Q ss_pred CCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHH
Q 023816 167 NILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 200 (276)
Q Consensus 167 ~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l 200 (276)
...+...+|+++|||=.+.--++.++++++++.+
T Consensus 196 esle~~~eAl~agaDiImLDNm~~e~~~~av~~l 229 (280)
T COG0157 196 ESLEEAEEALEAGADIIMLDNMSPEELKEAVKLL 229 (280)
T ss_pred CCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHh
Confidence 5577889999999999999999999999988886
No 426
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.10 E-value=3.5e+02 Score=25.78 Aligned_cols=105 Identities=12% Similarity=0.096 Sum_probs=59.2
Q ss_pred ceeEEEEec--CCCCCCHHHHHHHHHh-hCCC-CcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCe
Q 023816 84 KVDLIITDY--CMPGMTGYELLKKIKV-TTPF-NFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIP 159 (276)
Q Consensus 84 ~~DlIL~D~--~mp~~~G~ell~~Ir~-~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 159 (276)
.+++.|+|. ..|++-.++.-.-+-. -.+| ..||-.|-+|-|=.+++ +++.. -+++.+.....-.
T Consensus 130 ~~~~~i~~TRKt~Pg~R~l~k~AV~~GGg~~HR~gL~d~ilikdNHi~~~---g~i~~---------av~~~r~~~~~~~ 197 (288)
T PRK07428 130 DLPTQLVDTRKTTPGLRLLEKYATQVGGAINHRMGLDDAVMIKDNHIQAA---GGIGE---------AITRIRQRIPYPL 197 (288)
T ss_pred CCCeEEEecCCCCCcchHHHHHHHHhcCcccccCCchheeeecHHHHHHh---CCHHH---------HHHHHHHhCCCCC
Confidence 356777776 5666655543332211 1111 24666777777654322 22111 1111111122223
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 023816 160 VVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 201 (276)
Q Consensus 160 iV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~ 201 (276)
.|.+..+ +.+...+|+++|+|-...-+++.+++++++..+.
T Consensus 198 ~I~VEv~-tleea~eA~~~GaD~I~LDn~~~e~l~~av~~~~ 238 (288)
T PRK07428 198 TIEVETE-TLEQVQEALEYGADIIMLDNMPVDLMQQAVQLIR 238 (288)
T ss_pred EEEEECC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 4555554 4567779999999888899999999998887654
No 427
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=26.02 E-value=5e+02 Score=23.52 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=23.5
Q ss_pred CeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 158 IPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 158 ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
.-+..+.+-..+.++.+|++.|++-+-.-|..
T Consensus 107 ~~i~~iPG~~TptEi~~a~~~Ga~~vKlFPa~ 138 (212)
T PRK05718 107 GPIPLIPGVSTPSELMLGMELGLRTFKFFPAE 138 (212)
T ss_pred cCCCEeCCCCCHHHHHHHHHCCCCEEEEccch
Confidence 34445666667778999999999887777754
No 428
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=25.86 E-value=3e+02 Score=26.50 Aligned_cols=43 Identities=16% Similarity=0.346 Sum_probs=34.2
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 201 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~ 201 (276)
+.+|.+=. ...+...+|+++|+|-.+.--++.+++++++..+.
T Consensus 208 ~~kIeVEv--~sleea~ea~~~gaDiI~LDn~s~e~~~~av~~~~ 250 (296)
T PRK09016 208 DVPVEVEV--ENLDELDQALKAGADIIMLDNFTTEQMREAVKRTN 250 (296)
T ss_pred CCCEEEEe--CCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Confidence 45554444 34788999999999999999999999999988664
No 429
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=25.71 E-value=1.8e+02 Score=28.02 Aligned_cols=63 Identities=19% Similarity=0.189 Sum_probs=42.9
Q ss_pred EEEEEeCCHHH----HHHHHHHHhhCCCEEEEECC---------HHHHHHHhcccccccccCCCCCceeEEEEecCCCCC
Q 023816 31 HVLAVDDSFVD----RKVIERLLTISSCKVTAVDS---------GRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM 97 (276)
Q Consensus 31 ~VLIVdD~~~~----~~~L~~~L~~~g~~v~~a~~---------g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~ 97 (276)
++|||-|.... .+.+++.|+..|+++..++. .+++++.+ +..++|+|| -..|.
T Consensus 30 ~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~-----------~~~~~D~II---avGGG 95 (377)
T cd08176 30 KALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVF-----------KKEGCDFII---SIGGG 95 (377)
T ss_pred eEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHH-----------HhcCCCEEE---EeCCc
Confidence 79999886553 34677888888887766542 33455544 556789888 24567
Q ss_pred CHHHHHHHHH
Q 023816 98 TGYELLKKIK 107 (276)
Q Consensus 98 ~G~ell~~Ir 107 (276)
+-+++.|.+.
T Consensus 96 S~iD~aK~ia 105 (377)
T cd08176 96 SPHDCAKAIG 105 (377)
T ss_pred HHHHHHHHHH
Confidence 7777787775
No 430
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=25.68 E-value=1.2e+02 Score=29.33 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=42.3
Q ss_pred EEEEEeCCHHH----HHHHHHHHhhCCCEEEEEC---------CHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC
Q 023816 31 HVLAVDDSFVD----RKVIERLLTISSCKVTAVD---------SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM 97 (276)
Q Consensus 31 ~VLIVdD~~~~----~~~L~~~L~~~g~~v~~a~---------~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~ 97 (276)
++|||-|.... .+.+.+.|+..|+++..++ +.+++++.+ ++.++|+|| -..|.
T Consensus 32 ~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~-----------~~~~~D~II---aiGGG 97 (382)
T PRK10624 32 KALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVF-----------KASGADYLI---AIGGG 97 (382)
T ss_pred EEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHH-----------HhcCCCEEE---EeCCh
Confidence 89999886553 3457778888888776653 224555555 556789887 24567
Q ss_pred CHHHHHHHHH
Q 023816 98 TGYELLKKIK 107 (276)
Q Consensus 98 ~G~ell~~Ir 107 (276)
+-+++.|-+.
T Consensus 98 S~iD~aK~ia 107 (382)
T PRK10624 98 SPQDTCKAIG 107 (382)
T ss_pred HHHHHHHHHH
Confidence 7777887664
No 431
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.51 E-value=6e+02 Score=24.26 Aligned_cols=23 Identities=9% Similarity=-0.052 Sum_probs=18.8
Q ss_pred EEEecCCCHHHHHHHHhcCCCeE
Q 023816 161 VIMSSENILARIDRCLEDGAEDF 183 (276)
Q Consensus 161 V~ls~~~~~~~~~~al~~Ga~d~ 183 (276)
+..|+.-..+.+.+..+.|+|-+
T Consensus 241 leaSGGI~~~ni~~yA~tGVD~I 263 (281)
T PRK06106 241 TEASGRITPETAPAIAASGVDLI 263 (281)
T ss_pred EEEECCCCHHHHHHHHhcCCCEE
Confidence 77888888888888889998544
No 432
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=25.51 E-value=1.1e+02 Score=25.12 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=10.7
Q ss_pred CCCceeEEEEecCCC
Q 023816 81 DGLKVDLIITDYCMP 95 (276)
Q Consensus 81 ~~~~~DlIL~D~~mp 95 (276)
...+||+|++-+-.-
T Consensus 53 ~~~~pd~Vii~~G~N 67 (189)
T cd01825 53 AALPPDLVILSYGTN 67 (189)
T ss_pred hhCCCCEEEEECCCc
Confidence 356899999877443
No 433
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=25.51 E-value=3.5e+02 Score=25.21 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+| |..++.-..+.+.+..+.|++.+-+
T Consensus 227 ~i~-i~asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 227 RVL-LEASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred CeE-EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 344 5667777888999999999987643
No 434
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=25.38 E-value=86 Score=32.14 Aligned_cols=29 Identities=10% Similarity=0.022 Sum_probs=24.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCE-EEEE
Q 023816 31 HVLAVDDSFVDRKVIERLLTISSCK-VTAV 59 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g~~-v~~a 59 (276)
+||+||....+-..|.++|++.|++ +...
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~ 30 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGELGPEEIEVV 30 (534)
T ss_pred CEEEEECchhHHHHHHHHHHHcCCCeEEEE
Confidence 4899999888889999999999985 6665
No 435
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein.
Probab=25.21 E-value=2.6e+02 Score=24.05 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=39.5
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 24 PSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 24 ~~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
.++..+.+|-++.+.... ..+.+.+.. +.++..+.+.+++++.+ ..++.|+++.|.
T Consensus 126 ~~dl~g~~i~~~~g~~~~-~~l~~~~~~-~~~~~~~~s~~~~~~~L-----------~~g~vD~~v~~~ 181 (250)
T TIGR01096 126 LEDLDGKTVGVQSGTTHE-QYLKDYFKP-GVDIVEYDSYDNANMDL-----------KAGRIDAVFTDA 181 (250)
T ss_pred hHHcCCCEEEEecCchHH-HHHHHhccC-CcEEEEcCCHHHHHHHH-----------HcCCCCEEEeCH
Confidence 344556678777665543 344444432 67777888999999999 788999999874
No 436
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=25.17 E-value=1.8e+02 Score=27.72 Aligned_cols=38 Identities=16% Similarity=0.025 Sum_probs=30.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHH
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQ 67 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~ 67 (276)
-+|.|.+-++..++.+.+.+++.|.++..+.+.+++++
T Consensus 154 ~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~ 191 (325)
T TIGR02371 154 EEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVE 191 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhc
Confidence 46778888888888888877777888888899888875
No 437
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=25.12 E-value=1.4e+02 Score=28.67 Aligned_cols=65 Identities=20% Similarity=0.109 Sum_probs=42.8
Q ss_pred cEEEEEeCCHH-HHHHHHHHHhhCCCEEEEEC--------CHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHH
Q 023816 30 VHVLAVDDSFV-DRKVIERLLTISSCKVTAVD--------SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGY 100 (276)
Q Consensus 30 ~~VLIVdD~~~-~~~~L~~~L~~~g~~v~~a~--------~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ 100 (276)
-|+|||-|... ..+.+...|+..|+++..++ +.+++++.+ ++.++|+|| -..|.+-+
T Consensus 23 ~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~-----------~~~~~D~II---aiGGGS~~ 88 (374)
T cd08183 23 RRVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEA-----------RNAGCDVVI---AIGGGSVI 88 (374)
T ss_pred CcEEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHH-----------HhcCCCEEE---EecCchHH
Confidence 37888887644 45557777888887766542 234455554 566889987 34677777
Q ss_pred HHHHHHHh
Q 023816 101 ELLKKIKV 108 (276)
Q Consensus 101 ell~~Ir~ 108 (276)
++.|-+..
T Consensus 89 D~aK~ia~ 96 (374)
T cd08183 89 DAGKAIAA 96 (374)
T ss_pred HHHHHHHH
Confidence 77777654
No 438
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=25.03 E-value=2.9e+02 Score=23.92 Aligned_cols=75 Identities=12% Similarity=0.001 Sum_probs=43.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCH-HHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG-YELLKK 105 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G-~ell~~ 105 (276)
.+.-+|||..-..-.-..+.+.|.+.|++|..+....+.++.+..+.+. .+.+++.+.+|+. +.+. ..+++.
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~--~~~~~~~~~~~ 81 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRA-----AGGAAEALAFDIA--DEEAVAAAFAR 81 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHh-----cCCceEEEEccCC--CHHHHHHHHHH
Confidence 3455788888877777777777777899988866544433333111110 1234667777764 2222 335555
Q ss_pred HHh
Q 023816 106 IKV 108 (276)
Q Consensus 106 Ir~ 108 (276)
+..
T Consensus 82 ~~~ 84 (256)
T PRK06124 82 IDA 84 (256)
T ss_pred HHH
Confidence 544
No 439
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.84 E-value=7.5e+02 Score=25.17 Aligned_cols=97 Identities=14% Similarity=0.224 Sum_probs=59.7
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCH----H---HHHHHHHh
Q 023816 36 DDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG----Y---ELLKKIKV 108 (276)
Q Consensus 36 dD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G----~---ell~~Ir~ 108 (276)
-=|...-+.|...|...||+++. .....|+|+++.|---.+. + ..++++|+
T Consensus 24 ~~N~~dse~~~~~L~~~G~~~~~----------------------~~e~ADvvviNTCtv~~~A~~k~~~~i~~~~~~k~ 81 (502)
T PRK14326 24 QMNVHDSERLAGLLEAAGYVRAA----------------------EGQDADVVVFNTCAVRENADNRLYGNLGHLAPVKR 81 (502)
T ss_pred CCcHHHHHHHHHHHHHCCCEECC----------------------CcCCCCEEEEECCCeeehHHHHHHHHHHHHHHHHH
Confidence 36778888888888888887752 1224799999988755443 2 34444554
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHh-cCCCeEEeCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLE-DGAEDFIVKP 187 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~-~Ga~d~l~KP 187 (276)
..| .++|| +++-.-.....++++ ....|++..+
T Consensus 82 ~~p---------------------------------------------~~~Vv-vgGc~a~~~~ee~~~~~p~VD~Vvg~ 115 (502)
T PRK14326 82 ANP---------------------------------------------GMQIA-VGGCLAQKDRDTILKRAPWVDVVFGT 115 (502)
T ss_pred hCC---------------------------------------------CCEEE-EECcccccCHHHHHhhCCCCeEEECC
Confidence 444 55444 554433334555554 3445788888
Q ss_pred CCHHHHHHHHHHH
Q 023816 188 VKLSDVKRIKDYL 200 (276)
Q Consensus 188 v~~~~L~~~~~~l 200 (276)
.....+..++..+
T Consensus 116 ~~~~~i~~ll~~~ 128 (502)
T PRK14326 116 HNIGSLPTLLERA 128 (502)
T ss_pred CCHHHHHHHHHHH
Confidence 7766665555443
No 440
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=24.81 E-value=2.6e+02 Score=28.57 Aligned_cols=71 Identities=20% Similarity=0.207 Sum_probs=48.6
Q ss_pred EEEE--eCCHHHHHHHHHHHhhCCCEEEEE-----------CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC-
Q 023816 32 VLAV--DDSFVDRKVIERLLTISSCKVTAV-----------DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM- 97 (276)
Q Consensus 32 VLIV--dD~~~~~~~L~~~L~~~g~~v~~a-----------~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~- 97 (276)
||.| ||-|.+.+....+-+..|++|.+- .+.++..+++.. +....|.+|+.+.|---
T Consensus 2 Il~vPLD~RP~n~~~~~~~a~~~g~~v~~Pp~~~l~~~~~~gd~~~l~~Wl~~---------~~~~~d~~ViS~D~L~yG 72 (497)
T PF13552_consen 2 ILYVPLDDRPCNYDFPVDLAKIAGYEVITPPKELLGDKKQPGDPEALWDWLEE---------NAPDADAAVISTDMLLYG 72 (497)
T ss_pred EEEeCCCCCCCChHHHHHHHHhcCcEEecCCHHHhcCCCCCCCHHHHHHHHHh---------ccccCCEEEEEHHhhhhc
Confidence 4554 899999999999999999999873 345566666632 23357777777654321
Q ss_pred ----------------CHHHHHHHHHhhCC
Q 023816 98 ----------------TGYELLKKIKVTTP 111 (276)
Q Consensus 98 ----------------~G~ell~~Ir~~~p 111 (276)
.-++.+++||+.+|
T Consensus 73 GLv~SR~~~~~~~~~~~rl~~l~~lk~~~p 102 (497)
T PF13552_consen 73 GLVPSRIHHLSLEEALERLERLRELKARNP 102 (497)
T ss_pred CcHhhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 23467778888777
No 441
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=24.68 E-value=3.2e+02 Score=25.54 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=33.5
Q ss_pred CeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 023816 158 IPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 201 (276)
Q Consensus 158 ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~ 201 (276)
-..|-++.++ .+...+|.+.|+|-...-|+..+++++++..+.
T Consensus 178 ~~~Igvev~t-~eea~~A~~~gaDyI~ld~~~~e~lk~~v~~~~ 220 (265)
T TIGR00078 178 ALKIEVEVES-LEEAEEAAEAGADIIMLDNMKPEEIKEAVQLLK 220 (265)
T ss_pred CCeEEEEeCC-HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhc
Confidence 3456677654 466888999999877799999999988887653
No 442
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=24.67 E-value=1.1e+02 Score=31.66 Aligned_cols=32 Identities=13% Similarity=0.050 Sum_probs=27.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECC
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDS 61 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~ 61 (276)
.+|||||.....-..|.++|+..|+++..+.+
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~ 33 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRN 33 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEEC
Confidence 58999998888888899999999988887664
No 443
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.57 E-value=3.5e+02 Score=22.33 Aligned_cols=15 Identities=7% Similarity=0.226 Sum_probs=10.7
Q ss_pred CCceeEEEEecCCCC
Q 023816 82 GLKVDLIITDYCMPG 96 (276)
Q Consensus 82 ~~~~DlIL~D~~mp~ 96 (276)
..+||+|++-+-.-+
T Consensus 65 ~~~pd~Vii~~G~ND 79 (188)
T cd01827 65 AFNPNIVIIKLGTND 79 (188)
T ss_pred ccCCCEEEEEcccCC
Confidence 457999998775443
No 444
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=24.52 E-value=5e+02 Score=25.76 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=22.0
Q ss_pred CceeEEEEecCCCC-CCHHHHHHHHHhhCC
Q 023816 83 LKVDLIITDYCMPG-MTGYELLKKIKVTTP 111 (276)
Q Consensus 83 ~~~DlIL~D~~mp~-~~G~ell~~Ir~~~p 111 (276)
..+|+|++|.-=.. ..-++++++||+..|
T Consensus 121 ~g~D~iviD~AhGhs~~~i~~ik~ik~~~P 150 (346)
T PRK05096 121 PALNFICIDVANGYSEHFVQFVAKAREAWP 150 (346)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHHhCC
Confidence 46899999985443 234689999998777
No 445
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=24.42 E-value=1.7e+02 Score=28.42 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=44.9
Q ss_pred EEEEEeCCHH----HHHHHHHHHhhCCCEEEEEC---------CHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC
Q 023816 31 HVLAVDDSFV----DRKVIERLLTISSCKVTAVD---------SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM 97 (276)
Q Consensus 31 ~VLIVdD~~~----~~~~L~~~L~~~g~~v~~a~---------~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~ 97 (276)
++|||-|... ..+.+.+.|+..|+.+..++ +.+++.+.+ ++.++|+|| -..|.
T Consensus 33 ~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~-----------~~~~~D~Ii---aiGGG 98 (383)
T PRK09860 33 RTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLL-----------KENNCDSVI---SLGGG 98 (383)
T ss_pred EEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHH-----------HHcCCCEEE---EeCCc
Confidence 8999988644 34567888888888776543 344555555 566899988 24577
Q ss_pred CHHHHHHHHHh
Q 023816 98 TGYELLKKIKV 108 (276)
Q Consensus 98 ~G~ell~~Ir~ 108 (276)
+-++..|.+..
T Consensus 99 S~iD~AK~ia~ 109 (383)
T PRK09860 99 SPHDCAKGIAL 109 (383)
T ss_pred hHHHHHHHHHH
Confidence 88888888764
No 446
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=24.32 E-value=6.4e+02 Score=24.98 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=32.8
Q ss_pred cEEEEEeCCHH---HHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 30 VHVLAVDDSFV---DRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 30 ~~VLIVdD~~~---~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
.+|.+|..+.. -.+.|+.+-+..|+.+..+.++.+..+.+. +-.++|+||+|.
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~----------~l~~~DlVLIDT 223 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA----------ELRNKHMVLIDT 223 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH----------HhcCCCEEEEcC
Confidence 46666665543 345666666777887777766544433331 123579999997
No 447
>PLN02979 glycolate oxidase
Probab=24.24 E-value=7.2e+02 Score=24.77 Aligned_cols=92 Identities=18% Similarity=0.160 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHhhCCCEEEE--ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC-C----CHHHHHHHHHhhC
Q 023816 38 SFVDRKVIERLLTISSCKVTA--VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-M----TGYELLKKIKVTT 110 (276)
Q Consensus 38 ~~~~~~~L~~~L~~~g~~v~~--a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~-~----~G~ell~~Ir~~~ 110 (276)
.....+.++.+-+..+..+.. +.+.++|.+.. +..+|-|++.=+=.. . ..++++.++++.-
T Consensus 208 ~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~------------~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~ 275 (366)
T PLN02979 208 RTLSWKDVQWLQTITKLPILVKGVLTGEDARIAI------------QAGAAGIIVSNHGARQLDYVPATISALEEVVKAT 275 (366)
T ss_pred CCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHH------------hcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHh
Confidence 334556677666666766554 77888888766 345777766543111 1 2356666665421
Q ss_pred CCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 111 PFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 111 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
...++|++=.+-....++.+|+..||+....
T Consensus 276 --------------------------------------------~~~~~Vi~dGGIr~G~Di~KALALGAdaV~i 306 (366)
T PLN02979 276 --------------------------------------------QGRIPVFLDGGVRRGTDVFKALALGASGIFI 306 (366)
T ss_pred --------------------------------------------CCCCeEEEeCCcCcHHHHHHHHHcCCCEEEE
Confidence 1157888777778888999999999998754
No 448
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=24.05 E-value=1.3e+02 Score=26.31 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=23.8
Q ss_pred CccEEEEEeCCHHH---HHHHHHHHhhCCCEEEEE
Q 023816 28 EEVHVLAVDDSFVD---RKVIERLLTISSCKVTAV 59 (276)
Q Consensus 28 ~~~~VLIVdD~~~~---~~~L~~~L~~~g~~v~~a 59 (276)
++=+||||||=-.. ...+.+++++.|.++..+
T Consensus 115 ~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~ 149 (179)
T COG0503 115 PGDRVLIVDDLLATGGTALALIELLEQAGAEVVGA 149 (179)
T ss_pred CCCEEEEEecchhcChHHHHHHHHHHHCCCEEEEE
Confidence 46799999986654 455677778888887763
No 449
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=23.97 E-value=6.9e+02 Score=27.38 Aligned_cols=53 Identities=13% Similarity=0.004 Sum_probs=35.0
Q ss_pred cEEEEEeCCHH---HHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 30 VHVLAVDDSFV---DRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 30 ~~VLIVdD~~~---~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
-+|.+|.-|.. ..+.++.+-+..|+.+..+.+..+..+.+. ....+|+||+|.
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~----------~~~~~D~VLIDT 271 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA----------ALGDKHLVLIDT 271 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH----------HhcCCCEEEEeC
Confidence 36777765543 346677777788888877777776555442 223579999996
No 450
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=23.97 E-value=1.6e+02 Score=28.94 Aligned_cols=63 Identities=21% Similarity=0.217 Sum_probs=42.6
Q ss_pred EEEEEeCCHHHH----HHHHHHHhhCCCEEEEEC---------CHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC
Q 023816 31 HVLAVDDSFVDR----KVIERLLTISSCKVTAVD---------SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM 97 (276)
Q Consensus 31 ~VLIVdD~~~~~----~~L~~~L~~~g~~v~~a~---------~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~ 97 (276)
+||||-|..... +.+.+.|+..|+++..++ +.+++++.+ ++.++|+|| -+.|.
T Consensus 25 ~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~-----------~~~~~D~II---aiGGG 90 (414)
T cd08190 25 RVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFA-----------KKGQFDAFV---AVGGG 90 (414)
T ss_pred eEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHH-----------HhcCCCEEE---EeCCc
Confidence 889998876543 556777887888776643 234455555 566789986 45677
Q ss_pred CHHHHHHHHH
Q 023816 98 TGYELLKKIK 107 (276)
Q Consensus 98 ~G~ell~~Ir 107 (276)
+-+++.|.+.
T Consensus 91 SviD~AKaia 100 (414)
T cd08190 91 SVIDTAKAAN 100 (414)
T ss_pred cHHHHHHHHH
Confidence 7777777775
No 451
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=23.91 E-value=4.7e+02 Score=23.86 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=21.0
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
.+|+|++-+ -+.+.+.+.++.|++..=
T Consensus 158 ~iP~vAIGG-i~~~nv~~v~~~Ga~gVA 184 (211)
T COG0352 158 NIPVVAIGG-INLENVPEVLEAGADGVA 184 (211)
T ss_pred CCCEEEEcC-CCHHHHHHHHHhCCCeEE
Confidence 389887765 556788899999998763
No 452
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=23.83 E-value=2.9e+02 Score=26.74 Aligned_cols=75 Identities=20% Similarity=0.111 Sum_probs=46.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCC-EEE-EECCHHHHHHHhcccccc---cccCCCCCceeEEEEecCCCCCCH--HHHH
Q 023816 31 HVLAVDDSFVDRKVIERLLTISSC-KVT-AVDSGRRALQFLGLDEEQ---SINGFDGLKVDLIITDYCMPGMTG--YELL 103 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g~-~v~-~a~~g~~al~~l~~~~~~---~~~~~~~~~~DlIL~D~~mp~~~G--~ell 103 (276)
+|..||-++...+.+++-++..|+ ++. ...+..+.++.+.....+ ...+..+..||+|++|- | ..| -+++
T Consensus 230 ~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDP--P-R~G~~~~~l 306 (362)
T PRK05031 230 RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDP--P-RAGLDDETL 306 (362)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECC--C-CCCCcHHHH
Confidence 799999999999999888877776 343 366777766654210000 00000122589999993 4 456 3577
Q ss_pred HHHHh
Q 023816 104 KKIKV 108 (276)
Q Consensus 104 ~~Ir~ 108 (276)
+.|.+
T Consensus 307 ~~l~~ 311 (362)
T PRK05031 307 KLVQA 311 (362)
T ss_pred HHHHc
Confidence 77763
No 453
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=23.77 E-value=1.9e+02 Score=26.56 Aligned_cols=52 Identities=23% Similarity=0.271 Sum_probs=32.3
Q ss_pred HHHHhhCCCEEEEECC-------HHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCC
Q 023816 46 ERLLTISSCKVTAVDS-------GRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTP 111 (276)
Q Consensus 46 ~~~L~~~g~~v~~a~~-------g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p 111 (276)
.+.++..|+.|....+ ..+.++.+ ++.++|+|++|.- ..+. +..+.+|...+
T Consensus 46 ~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l-----------~~~~~d~vV~D~y--~~~~-~~~~~~k~~~~ 104 (279)
T TIGR03590 46 IDLLLSAGFPVYELPDESSRYDDALELINLL-----------EEEKFDILIVDHY--GLDA-DWEKLIKEFGR 104 (279)
T ss_pred HHHHHHcCCeEEEecCCCchhhhHHHHHHHH-----------HhcCCCEEEEcCC--CCCH-HHHHHHHHhCC
Confidence 4566788888876543 33455555 5568999999974 3332 35566665443
No 454
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=23.75 E-value=2.6e+02 Score=27.58 Aligned_cols=58 Identities=24% Similarity=0.358 Sum_probs=38.3
Q ss_pred CceeEEEEecCCCC-CCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEE
Q 023816 83 LKVDLIITDYCMPG-MTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVV 161 (276)
Q Consensus 83 ~~~DlIL~D~~mp~-~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV 161 (276)
...|+|++|.--.. ..-.+.+++||+..| +++||
T Consensus 119 agvD~ivID~a~g~s~~~~~~ik~ik~~~~---------------------------------------------~~~vi 153 (352)
T PF00478_consen 119 AGVDVIVIDSAHGHSEHVIDMIKKIKKKFP---------------------------------------------DVPVI 153 (352)
T ss_dssp TT-SEEEEE-SSTTSHHHHHHHHHHHHHST---------------------------------------------TSEEE
T ss_pred cCCCEEEccccCccHHHHHHHHHHHHHhCC---------------------------------------------CceEE
Confidence 46799999974432 335679999998877 67776
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 162 IMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 162 ~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
+ -.=...+.....+++||+...+=
T Consensus 154 a-GNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 154 A-GNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp E-EEE-SHHHHHHHHHTT-SEEEES
T ss_pred e-cccCCHHHHHHHHHcCCCEEEEe
Confidence 3 23345666777889999887664
No 455
>PF09456 RcsC: RcsC Alpha-Beta-Loop (ABL); InterPro: IPR019017 This domain is found in the C terminus of the signal transduction response regulator (phospho-relay) kinase RcsC, between the ATP-binding region (IPR003594 from INTERPRO) and the receiver region (IPR001789 from INTERPRO). This domain forms a discrete alpha/beta/loop structure []. The Rcs signalling pathway controls a variety of physiological functions like capsule synthesis, cell division or motility in prokaryotes. The Rcs regulation cascade, involving a multi-step phosphorelay between the two membrane-bound hybrid sensor kinases RcsC and RcsD and the global regulator RcsB, is, up to now, one of the most complicated regulatory systems in bacteria []. ; GO: 0004673 protein histidine kinase activity, 0004871 signal transducer activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent, 0018106 peptidyl-histidine phosphorylation, 0005886 plasma membrane, 0016021 integral to membrane; PDB: 2AYY_A 2AYX_A.
Probab=23.74 E-value=1.7e+02 Score=23.49 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCC
Q 023816 37 DSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM 94 (276)
Q Consensus 37 D~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~m 94 (276)
.|.....-|+++|+..|+.|.... |+ ....-|++|+|...
T Consensus 7 rNa~Le~yL~~lL~~~G~~v~~y~-~q-----------------~~~~~DvlItD~~~ 46 (92)
T PF09456_consen 7 RNAYLESYLQRLLSYHGFQVQRYE-GQ-----------------QPDADDVLITDYEP 46 (92)
T ss_dssp --HHHHHHHHHHHCTTTEEEEE-S-S---------------------TT-EEEEESS-
T ss_pred hhHHHHHHHHHHHHHCCcEEEEec-CC-----------------CCCCCcEEEECCCc
Confidence 566778889999999999998876 22 12346999999865
No 456
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=23.70 E-value=1.8e+02 Score=21.89 Aligned_cols=65 Identities=22% Similarity=0.177 Sum_probs=39.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecC-CCCCCHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC-MPGMTGYELLKK 105 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~-mp~~~G~ell~~ 105 (276)
+..++..||=++...+..++..+..+.++.. ..+..+ +.. ....||+|++-.. +.-.+--++.+-
T Consensus 23 ~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~-l~~------------~~~~~D~v~~~~~~~~~~~~~~~~~l 89 (101)
T PF13649_consen 23 PSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARD-LPF------------SDGKFDLVVCSGLSLHHLSPEELEAL 89 (101)
T ss_dssp --SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTC-HHH------------HSSSEEEEEE-TTGGGGSSHHHHHHH
T ss_pred ccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhH-Ccc------------cCCCeeEEEEcCCccCCCCHHHHHHH
Confidence 3589999999999999999998776654443 334332 332 2448999999433 444554333333
No 457
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=23.54 E-value=6.1e+02 Score=23.66 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=19.3
Q ss_pred CeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 158 IPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 158 ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
+||++=. -...+....+.++|++...+
T Consensus 173 ~pvivK~-v~s~~~a~~a~~~G~d~I~v 199 (299)
T cd02809 173 GPLILKG-ILTPEDALRAVDAGADGIVV 199 (299)
T ss_pred CCEEEee-cCCHHHHHHHHHCCCCEEEE
Confidence 5665442 24567788999999988876
No 458
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=23.48 E-value=2.1e+02 Score=26.63 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=29.4
Q ss_pred cEEEEEeCCHH---HHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 30 VHVLAVDDSFV---DRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 30 ~~VLIVdD~~~---~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
.+|.+|+-++. ....+..+-...|+.+..+.+..+..+.+. .-..+|+||+|.
T Consensus 225 ~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~----------~~~~~d~vliDt 280 (282)
T TIGR03499 225 KKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALD----------RLRDKDLILIDT 280 (282)
T ss_pred CeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHH----------HccCCCEEEEeC
Confidence 46666665542 234444555556666666666554443331 112478998884
No 459
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.45 E-value=6.2e+02 Score=23.73 Aligned_cols=32 Identities=13% Similarity=0.101 Sum_probs=20.8
Q ss_pred cEEEEEe-----CCHHHHHHHHHHHhhCCCEEEEECC
Q 023816 30 VHVLAVD-----DSFVDRKVIERLLTISSCKVTAVDS 61 (276)
Q Consensus 30 ~~VLIVd-----D~~~~~~~L~~~L~~~g~~v~~a~~ 61 (276)
|||.||- +.....+.+.++|+..|+++.....
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~ 37 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSE 37 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecc
Confidence 4677762 2233456677778888999887643
No 460
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=23.43 E-value=7e+02 Score=24.74 Aligned_cols=30 Identities=7% Similarity=0.108 Sum_probs=27.2
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
.+|||+-.+-....++..|+.+||+-.+.=
T Consensus 212 ~v~VIaDGGIr~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 212 KGHIISDGGCTCPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred CCeEEEcCCcCchhHHHHHHHcCCCEEEEC
Confidence 689999999999999999999999987765
No 461
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=23.43 E-value=3.5e+02 Score=24.32 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=23.5
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+|+++--+-...+++.++.+.|+++.+.
T Consensus 191 ~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 191 NIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp SSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred CCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 58998888888899999999999988875
No 462
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=23.37 E-value=1.3e+02 Score=22.87 Aligned_cols=64 Identities=16% Similarity=0.099 Sum_probs=26.5
Q ss_pred cEEEEEeCCH---HHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 30 VHVLAVDDSF---VDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 30 ~~VLIVdD~~---~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
.++..||..+ ..++.+++.--...+++. ..+..+.+..+ ....+|+|++|-. -+.-...+.+
T Consensus 24 ~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~l~~~-----------~~~~~dli~iDg~---H~~~~~~~dl 88 (106)
T PF13578_consen 24 GKLYSVDPFPGDEQAQEIIKKAGLSDRVEFI-QGDSPDFLPSL-----------PDGPIDLIFIDGD---HSYEAVLRDL 88 (106)
T ss_dssp ---EEEESS------------GGG-BTEEEE-ES-THHHHHHH-----------HH--EEEEEEES------HHHHHHHH
T ss_pred CCEEEEECCCcccccchhhhhcCCCCeEEEE-EcCcHHHHHHc-----------CCCCEEEEEECCC---CCHHHHHHHH
Confidence 5789999988 555555541111123333 44446667766 3357999999952 1233444555
Q ss_pred Hh
Q 023816 107 KV 108 (276)
Q Consensus 107 r~ 108 (276)
+.
T Consensus 89 ~~ 90 (106)
T PF13578_consen 89 EN 90 (106)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 463
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=23.36 E-value=1.3e+02 Score=24.95 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhCCCEEEE---ECCHHHHHHHhcccccccccCCCCCceeEEEEe
Q 023816 41 DRKVIERLLTISSCKVTA---VDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91 (276)
Q Consensus 41 ~~~~L~~~L~~~g~~v~~---a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D 91 (276)
+...|++.|++.|+++.. +.+..+.+...-.. ...+.|+||+-
T Consensus 28 n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~--------~~~~~DliItt 73 (144)
T TIGR00177 28 NGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRK--------AVDEADVVLTT 73 (144)
T ss_pred cHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHH--------HHhCCCEEEEC
Confidence 456788889999998774 44444433332110 11258999976
No 464
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=23.29 E-value=2.2e+02 Score=24.44 Aligned_cols=46 Identities=11% Similarity=0.072 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhcccccccccCCCCCceeEEEEe
Q 023816 40 VDRKVIERLLTISSCKVTA---VDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91 (276)
Q Consensus 40 ~~~~~L~~~L~~~g~~v~~---a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D 91 (276)
.+...|..+|++.|+++.. +.+..+.++..-.+. .+..+.|+||+-
T Consensus 22 ~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~------~~~~~~DlVItt 70 (163)
T TIGR02667 22 TSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAW------IADPDVQVILIT 70 (163)
T ss_pred CcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHH------HhcCCCCEEEEC
Confidence 3667889999999997765 344433333221100 012468999964
No 465
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=23.29 E-value=4.8e+02 Score=22.36 Aligned_cols=73 Identities=14% Similarity=-0.063 Sum_probs=41.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCH-HHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG-YELLKKIK 107 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G-~ell~~Ir 107 (276)
.-+|||..-.-..-..+.+.|...|++|.......+..+.+..+.+. ...++.++.+|+. +.+. .++++.+.
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~--~~~~~~~~~~~~~ 76 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQK-----AGGKAIGVAMDVT--DEEAINAGIDYAV 76 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEcCCC--CHHHHHHHHHHHH
Confidence 34788988776666777666667899988765444433333111110 1335677777764 3333 34555555
Q ss_pred h
Q 023816 108 V 108 (276)
Q Consensus 108 ~ 108 (276)
+
T Consensus 77 ~ 77 (258)
T PRK12429 77 E 77 (258)
T ss_pred H
Confidence 4
No 466
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.27 E-value=4.5e+02 Score=22.10 Aligned_cols=75 Identities=13% Similarity=-0.014 Sum_probs=43.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCH-HHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG-YELLK 104 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G-~ell~ 104 (276)
+.+.+|||....-..-..+.+.|...|+++.. ..+..+.++.+...... .+..+..+-+|+. +.+. .++++
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~--~~~~v~~~~~ 76 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEA-----LGRRAQAVQADVT--DKAALEAAVA 76 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHh-----cCCceEEEECCcC--CHHHHHHHHH
Confidence 33458999998888888888888888998765 44434333333211110 2234667777764 2222 23455
Q ss_pred HHHh
Q 023816 105 KIKV 108 (276)
Q Consensus 105 ~Ir~ 108 (276)
.+.+
T Consensus 77 ~~~~ 80 (249)
T PRK12825 77 AAVE 80 (249)
T ss_pred HHHH
Confidence 5543
No 467
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=23.27 E-value=3.7e+02 Score=26.18 Aligned_cols=28 Identities=14% Similarity=0.360 Sum_probs=21.9
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++|||+=.. ...+++..|.+.|++..++
T Consensus 213 ~~PvivKgv-~~~~dA~~a~~~G~d~I~v 240 (344)
T cd02922 213 KLPIVLKGV-QTVEDAVLAAEYGVDGIVL 240 (344)
T ss_pred CCcEEEEcC-CCHHHHHHHHHcCCCEEEE
Confidence 578777644 5688899999999988774
No 468
>PRK06801 hypothetical protein; Provisional
Probab=23.23 E-value=3.2e+02 Score=25.97 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=20.5
Q ss_pred CCeEEEEecCC-CHHHHHHHHhcCCCeE
Q 023816 157 EIPVVIMSSEN-ILARIDRCLEDGAEDF 183 (276)
Q Consensus 157 ~ipiV~ls~~~-~~~~~~~al~~Ga~d~ 183 (276)
++|+|+.-++. ..+...++++.|+..+
T Consensus 203 ~~PLVlHGGSgi~~e~~~~~i~~Gi~KI 230 (286)
T PRK06801 203 GLPLVLHGGSGISDADFRRAIELGIHKI 230 (286)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEE
Confidence 48888875544 4567889999999876
No 469
>PRK12939 short chain dehydrogenase; Provisional
Probab=23.11 E-value=3.5e+02 Score=23.07 Aligned_cols=38 Identities=11% Similarity=-0.056 Sum_probs=27.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRR 64 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~ 64 (276)
++.-+|||..-.--.-..+.+.|...|+++.......+
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~ 42 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAA 42 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 34567888887777777777777778998877654444
No 470
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=23.09 E-value=3.9e+02 Score=25.23 Aligned_cols=29 Identities=21% Similarity=0.513 Sum_probs=22.1
Q ss_pred CCeEEEEecCC-CHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSEN-ILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~-~~~~~~~al~~Ga~d~l~ 185 (276)
++|+|+.-++. ..+...++++.|+..+=.
T Consensus 200 ~iPlV~hG~SGI~~e~~~~~i~~G~~kinv 229 (281)
T PRK06806 200 HIPLVLHGGSGISPEDFKKCIQHGIRKINV 229 (281)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEE
Confidence 58998886544 567788999999987643
No 471
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=23.07 E-value=6e+02 Score=23.41 Aligned_cols=62 Identities=11% Similarity=-0.004 Sum_probs=39.2
Q ss_pred eCCHHHHH---HHHHHHhhCCCEEEE-------ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC-CHHHHHH
Q 023816 36 DDSFVDRK---VIERLLTISSCKVTA-------VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM-TGYELLK 104 (276)
Q Consensus 36 dD~~~~~~---~L~~~L~~~g~~v~~-------a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~-~G~ell~ 104 (276)
.|+..-+. .+++.+++.|.++.. ..+....++.+ ...++|+|++-.. +- ++..+++
T Consensus 146 ~d~~~g~~~~~~~~~~l~~~G~~vv~~~~~~~~~~D~s~~i~~i-----------~~~~~d~v~~~~~--~~~~~~~~~~ 212 (347)
T cd06336 146 PNDAYGQPWVAAYKAAWEAAGGKVVSEEPYDPGTTDFSPIVTKL-----------LAEKPDVIFLGGP--SPAPAALVIK 212 (347)
T ss_pred cCCchhHHHHHHHHHHHHHcCCEEeeecccCCCCcchHHHHHHH-----------HhcCCCEEEEcCC--CchHHHHHHH
Confidence 44444433 355667778877764 24566667776 4567888876543 34 6778888
Q ss_pred HHHhhC
Q 023816 105 KIKVTT 110 (276)
Q Consensus 105 ~Ir~~~ 110 (276)
.+++..
T Consensus 213 ~~~~~g 218 (347)
T cd06336 213 QARELG 218 (347)
T ss_pred HHHHcC
Confidence 888643
No 472
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=23.06 E-value=4.6e+02 Score=23.89 Aligned_cols=27 Identities=15% Similarity=-0.004 Sum_probs=19.3
Q ss_pred eEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 159 PVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 159 piV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
|+++--+-...++..++.+.|++..+.
T Consensus 191 ~viasGGv~s~~Dl~~l~~~G~~gviv 217 (232)
T PRK13586 191 LKEYAGGVSSDADLEYLKNVGFDYIIV 217 (232)
T ss_pred CEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 455533445678888888999998876
No 473
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=23.03 E-value=6.6e+02 Score=23.92 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=25.0
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++||++-.+-....++.+++..||+.+-.
T Consensus 255 ~ipIiasGGIr~~~dv~kal~lGAd~V~i 283 (326)
T cd02811 255 DLPLIASGGIRNGLDIAKALALGADLVGM 283 (326)
T ss_pred CCcEEEECCCCCHHHHHHHHHhCCCEEEE
Confidence 68998888888999999999999987743
No 474
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=22.87 E-value=5.6e+02 Score=23.01 Aligned_cols=13 Identities=0% Similarity=-0.033 Sum_probs=6.3
Q ss_pred CCHHHHHHHHHhh
Q 023816 97 MTGYELLKKIKVT 109 (276)
Q Consensus 97 ~~G~ell~~Ir~~ 109 (276)
.++...+.+|+..
T Consensus 178 ~d~~~~~~~l~~~ 190 (336)
T cd06326 178 ADVAAAVAQLAAA 190 (336)
T ss_pred ccHHHHHHHHHhc
Confidence 3444555555543
No 475
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=22.86 E-value=6.6e+02 Score=23.87 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=21.9
Q ss_pred CCeEEEEecCCCHHHHHHHHh-cCCCeEE
Q 023816 157 EIPVVIMSSENILARIDRCLE-DGAEDFI 184 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~-~Ga~d~l 184 (276)
.+|||..-+-.+.++..++++ .||+...
T Consensus 194 ~iPVI~nGgI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 194 SIPVIANGDITDPLKARAVLDYTGADALM 222 (321)
T ss_pred CCcEEEeCCCCCHHHHHHHHhccCCCEEE
Confidence 488888777778888999996 5887664
No 476
>PRK00955 hypothetical protein; Provisional
Probab=22.86 E-value=8.9e+02 Score=25.83 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=23.6
Q ss_pred ccEEEEE------eCCHHHHHHHHHHHhhCCCEEEEEC
Q 023816 29 EVHVLAV------DDSFVDRKVIERLLTISSCKVTAVD 60 (276)
Q Consensus 29 ~~~VLIV------dD~~~~~~~L~~~L~~~g~~v~~a~ 60 (276)
.+.|++| |-...-..+|.+.|+..||+|....
T Consensus 13 ~~d~i~v~gdayvdhp~fg~a~i~r~L~~~G~~v~ii~ 50 (620)
T PRK00955 13 ELDFILVTGDAYVDHPSFGTAIIGRVLEAEGFRVGIIA 50 (620)
T ss_pred ccCEEEEeCcccccCCccHHHHHHHHHHHCCCEEEEec
Confidence 4455555 4555667889999999999998754
No 477
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=22.78 E-value=5.2e+02 Score=22.61 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=24.5
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
.+||++=-+-.+.+++.++++.||+..+.--
T Consensus 74 ~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~ 104 (233)
T PRK00748 74 DIPVQVGGGIRSLETVEALLDAGVSRVIIGT 104 (233)
T ss_pred CCCEEEcCCcCCHHHHHHHHHcCCCEEEECc
Confidence 4788876666778899999999998877643
No 478
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.76 E-value=3e+02 Score=23.72 Aligned_cols=19 Identities=11% Similarity=0.127 Sum_probs=11.9
Q ss_pred HHHHHHHHhhCCCEEEEEC
Q 023816 42 RKVIERLLTISSCKVTAVD 60 (276)
Q Consensus 42 ~~~L~~~L~~~g~~v~~a~ 60 (276)
.+.+++.++..|+++....
T Consensus 18 ~~gi~~~~~~~g~~~~~~~ 36 (270)
T cd06296 18 LRGVEEAAAAAGYDVVLSE 36 (270)
T ss_pred HHHHHHHHHHcCCeEEEec
Confidence 3445666677788776643
No 479
>PRK07695 transcriptional regulator TenI; Provisional
Probab=22.72 E-value=5.1e+02 Score=22.44 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=21.4
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
++||+++-+- ..+...++++.|++.+.
T Consensus 149 ~ipvia~GGI-~~~~~~~~~~~Ga~gva 175 (201)
T PRK07695 149 SIPVIAIGGI-TPENTRDVLAAGVSGIA 175 (201)
T ss_pred CCCEEEEcCC-CHHHHHHHHHcCCCEEE
Confidence 5788866555 78889999999998773
No 480
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.69 E-value=4e+02 Score=23.50 Aligned_cols=54 Identities=9% Similarity=-0.026 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhCCCEEEEECCH--HHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 41 DRKVIERLLTISSCKVTAVDSG--RRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 41 ~~~~L~~~L~~~g~~v~~a~~g--~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
..+.+++.++..||++...... .+.++.+ ...++|-|++--.. .+ .+.+++++.
T Consensus 22 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~-----------~~~~~dgiii~~~~--~~-~~~~~~~~~ 77 (283)
T cd06279 22 FLAGVAEVLDAAGVNLLLLPASSEDSDSALV-----------VSALVDGFIVYGVP--RD-DPLVAALLR 77 (283)
T ss_pred HHHHHHHHHHHCCCEEEEecCccHHHHHHHH-----------HhcCCCEEEEeCCC--CC-hHHHHHHHH
Confidence 3455677888889988775543 3445444 45677866653221 11 245666654
No 481
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein. Members of this family are the extracellular solute-binding proteins of ABC transporters that closely resemble amino acid transporters. The member from Sinorhizobium meliloti is involved in ectoine uptake, both for osmoprotection and for catabolism. All other members of the seed alignment are found associated with ectoine catabolic genes.
Probab=22.66 E-value=2.2e+02 Score=25.55 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=35.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCC---EEEEECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSC---KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~---~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
..+|-++.+... ..+|+..++ ++..+.+.+++++.+ ..++.|+++.|.
T Consensus 144 g~~Igv~~g~~~-----~~~l~~~~~~~~~i~~~~~~~~~i~~L-----------~~grvDa~i~d~ 194 (275)
T TIGR02995 144 DAKIAAPGGGTE-----EKLAREAGVKREQIIVVPDGQSGLKMV-----------QDGRADAYSLTV 194 (275)
T ss_pred CceEEEeCCcHH-----HHHHHHcCCChhhEEEeCCHHHHHHHH-----------HcCCCCEEecCh
Confidence 567888877653 234444443 677889999999999 788999999885
No 482
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=22.51 E-value=5.8e+02 Score=23.02 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=5.6
Q ss_pred HHHHHHHHHhh
Q 023816 99 GYELLKKIKVT 109 (276)
Q Consensus 99 G~ell~~Ir~~ 109 (276)
|.+++++||..
T Consensus 52 G~~~v~~lr~~ 62 (228)
T PTZ00170 52 GPPVVKSLRKH 62 (228)
T ss_pred CHHHHHHHHhc
Confidence 45555555543
No 483
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=22.49 E-value=6e+02 Score=23.23 Aligned_cols=47 Identities=21% Similarity=0.344 Sum_probs=31.0
Q ss_pred ccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCH------HHHHHHHHHHHH
Q 023816 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL------SDVKRIKDYLTR 202 (276)
Q Consensus 152 ~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~------~~L~~~~~~l~~ 202 (276)
+.....+|||+.-.. ...+.++.|..+++.++-+. +++.+.+.++..
T Consensus 299 EA~a~G~PvI~s~~~----~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~ 351 (388)
T TIGR02149 299 EAMACGTPVVASATG----GIPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLA 351 (388)
T ss_pred HHHHcCCCEEEeCCC----CHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHh
Confidence 444457888764322 24456677888999998887 777666665543
No 484
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=22.48 E-value=5.2e+02 Score=22.49 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=30.0
Q ss_pred cCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 153 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 153 ~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
.....+|||+....... +.+..|-.+++.++-+.+++.+.+..+..
T Consensus 319 a~~~G~pvi~~~~~~~~----~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 364 (394)
T cd03794 319 YMAAGKPVLASVDGESA----ELVEEAGAGLVVPPGDPEALAAAILELLD 364 (394)
T ss_pred HHHCCCcEEEecCCCch----hhhccCCcceEeCCCCHHHHHHHHHHHHh
Confidence 33447888775444333 33344567889999899999777776653
No 485
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=22.37 E-value=1.8e+02 Score=25.51 Aligned_cols=32 Identities=9% Similarity=0.225 Sum_probs=28.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECC
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDS 61 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~ 61 (276)
++|+|||-.--+...+.+.|+..|+++....+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~ 32 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSD 32 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECC
Confidence 58999999989999999999999999988865
No 486
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=22.34 E-value=7.2e+02 Score=25.07 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=12.7
Q ss_pred eeEEEEecCCCCCCH--HHHHHHHHh
Q 023816 85 VDLIITDYCMPGMTG--YELLKKIKV 108 (276)
Q Consensus 85 ~DlIL~D~~mp~~~G--~ell~~Ir~ 108 (276)
.|+||+|.- +... .+++++++.
T Consensus 176 ~DvVIIDTA--Gr~~~d~~lm~El~~ 199 (437)
T PRK00771 176 ADVIIVDTA--GRHALEEDLIEEMKE 199 (437)
T ss_pred CCEEEEECC--CcccchHHHHHHHHH
Confidence 599999973 3322 235555543
No 487
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=22.23 E-value=5.4e+02 Score=22.58 Aligned_cols=28 Identities=36% Similarity=0.392 Sum_probs=18.9
Q ss_pred CCceeEEEEecCC---CC-CCHHHHHHHHHhh
Q 023816 82 GLKVDLIITDYCM---PG-MTGYELLKKIKVT 109 (276)
Q Consensus 82 ~~~~DlIL~D~~m---p~-~~G~ell~~Ir~~ 109 (276)
+...|+|+.|.-+ |. ..-.++++.+++.
T Consensus 86 ~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~ 117 (221)
T PRK01130 86 AAGADIIALDATLRPRPDGETLAELVKRIKEY 117 (221)
T ss_pred HcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC
Confidence 3457899998865 32 4556788888753
No 488
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=22.21 E-value=1.8e+02 Score=25.56 Aligned_cols=34 Identities=6% Similarity=0.087 Sum_probs=29.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHH
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGR 63 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~ 63 (276)
++|+|||-.--+...+.+.|++.|+++..+.+.+
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~ 34 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPD 34 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHH
Confidence 5799999888888889999999999999998764
No 489
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=22.15 E-value=1.3e+02 Score=25.75 Aligned_cols=28 Identities=21% Similarity=0.127 Sum_probs=25.1
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEE
Q 023816 32 VLAVDDSFVDRKVIERLLTISSCKVTAV 59 (276)
Q Consensus 32 VLIVdD~~~~~~~L~~~L~~~g~~v~~a 59 (276)
|+|||-...+...+.+.|++.|+++...
T Consensus 1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~ 28 (188)
T TIGR00888 1 ILVLDFGSQYTQLIARRLRELGVYSELV 28 (188)
T ss_pred CEEEECCchHHHHHHHHHHHcCCEEEEE
Confidence 6899999999999999999999988765
No 490
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=22.08 E-value=1.7e+02 Score=31.52 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=29.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSG 62 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g 62 (276)
....+|||||-...+-..+.++|+..|+++..+.+.
T Consensus 514 ~~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~ 549 (717)
T TIGR01815 514 GEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHS 549 (717)
T ss_pred CCCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECC
Confidence 456799999977777789999999999998876543
No 491
>PRK09776 putative diguanylate cyclase; Provisional
Probab=22.05 E-value=3.6e+02 Score=28.96 Aligned_cols=95 Identities=16% Similarity=0.235 Sum_probs=58.2
Q ss_pred HHHHHHhhCCCEEEE--ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCC----C-CCHHHHHHHHHhhCCCCccc
Q 023816 44 VIERLLTISSCKVTA--VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP----G-MTGYELLKKIKVTTPFNFLY 116 (276)
Q Consensus 44 ~L~~~L~~~g~~v~~--a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp----~-~~G~ell~~Ir~~~p~~~~~ 116 (276)
..-+.|+..||++.. +..|-.-+..+ ....+|.|=+|-.+- . .+...+++.|.....
T Consensus 978 ~~~~~l~~~G~~~~lddfg~g~~~~~~l-----------~~~~~d~iKid~~~~~~~~~~~~~~~~~~~i~~~~~----- 1041 (1092)
T PRK09776 978 RLVQKLRLAGCRVVLSDFGRGLSSFNYL-----------KAFMADYLKLDGELVANLHGNLMDEMLISIIQGHAQ----- 1041 (1092)
T ss_pred HHHHHHHHCCcEEEEcCCCCCchHHHHH-----------HhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHH-----
Confidence 334556778888776 55666667776 566788888885331 1 122334444432111
Q ss_pred chheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCC----CeEEeCCCCHHH
Q 023816 117 STIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGA----EDFIVKPVKLSD 192 (276)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga----~d~l~KPv~~~~ 192 (276)
.-++.+| ..+=...+....+.+.|+ ..|+-||...++
T Consensus 1042 --------------------------------------~~~~~~i-aegVEt~~~~~~l~~~g~~~~QG~~~~~P~~~~~ 1082 (1092)
T PRK09776 1042 --------------------------------------RLGMKTI-AGPVELPLVLDTLSGIGVDLAYGYAIARPQPLDL 1082 (1092)
T ss_pred --------------------------------------HcCCcEE-ecccCCHHHHHHHHHcCCCEEeccccCCCCcHHH
Confidence 0033443 455566778888899999 456889988877
Q ss_pred H
Q 023816 193 V 193 (276)
Q Consensus 193 L 193 (276)
+
T Consensus 1083 ~ 1083 (1092)
T PRK09776 1083 L 1083 (1092)
T ss_pred H
Confidence 6
No 492
>PRK06823 ornithine cyclodeaminase; Validated
Probab=21.94 E-value=2.1e+02 Score=27.29 Aligned_cols=38 Identities=5% Similarity=-0.084 Sum_probs=30.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHH
Q 023816 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQF 68 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~ 68 (276)
+|.|.+-++...+.+.+.++..++++..+++.++|+..
T Consensus 155 ~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ 192 (315)
T PRK06823 155 QLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHA 192 (315)
T ss_pred EEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcC
Confidence 67788888888888888887778888888888887753
No 493
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.91 E-value=4.9e+02 Score=24.75 Aligned_cols=105 Identities=13% Similarity=0.150 Sum_probs=58.4
Q ss_pred CceeEEEEec--CCCCCCHHHHHHHH-HhhCCC-CcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCC
Q 023816 83 LKVDLIITDY--CMPGMTGYELLKKI-KVTTPF-NFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREI 158 (276)
Q Consensus 83 ~~~DlIL~D~--~mp~~~G~ell~~I-r~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (276)
..+++.++|. ..|++-.++--.-+ -.-.+| -.||-.|-+|-|-..+..+. .-+........+.
T Consensus 117 ~~~~~~i~~TRKt~Pg~R~l~k~Av~~GGg~~HR~gLsd~vLikdnHi~~~~i~-------------~av~~~r~~~~~~ 183 (278)
T PRK08385 117 VNPKVRVAGTRKTLPGLRLLDKKAIIIGGGEPHRFSLSDAILIKDNHLALVPLE-------------EAIRRAKEFSVYK 183 (278)
T ss_pred cCCCEEEEEeCCCChhhhHHHHHHHHhcCCcccCCCCcccEEEccCHHHHHHHH-------------HHHHHHHHhCCCC
Confidence 3566777776 45655444322211 111222 23555666665554322111 1112222222244
Q ss_pred eEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 159 PVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 159 piV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
+|.+=. ...+...+|+++|+|-.+.--++.+++++++..+..
T Consensus 184 kIeVEv--~~leea~~a~~agaDiI~LDn~~~e~l~~~v~~l~~ 225 (278)
T PRK08385 184 VVEVEV--ESLEDALKAAKAGADIIMLDNMTPEEIREVIEALKR 225 (278)
T ss_pred cEEEEe--CCHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHHh
Confidence 533323 467788899999999888888999999998887754
No 494
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=21.86 E-value=2.4e+02 Score=27.15 Aligned_cols=64 Identities=19% Similarity=0.134 Sum_probs=43.2
Q ss_pred EEEEEeCCHHH----HHHHHHHHhhCCCEEEEECC---------HHHHHHHhcccccccccCCCCCceeEEEEecCCCCC
Q 023816 31 HVLAVDDSFVD----RKVIERLLTISSCKVTAVDS---------GRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM 97 (276)
Q Consensus 31 ~VLIVdD~~~~----~~~L~~~L~~~g~~v~~a~~---------g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~ 97 (276)
+||||-|.... .+.+.+.|+..|+++..++. .+++++.+ ++.++|+|| -+.|.
T Consensus 28 ~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~-----------~~~~~d~II---aiGGG 93 (374)
T cd08189 28 KVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALY-----------RENGCDAIL---AVGGG 93 (374)
T ss_pred eEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHH-----------HhcCCCEEE---EeCCc
Confidence 89999887543 24566778888887776532 34556655 556789887 24577
Q ss_pred CHHHHHHHHHh
Q 023816 98 TGYELLKKIKV 108 (276)
Q Consensus 98 ~G~ell~~Ir~ 108 (276)
+-+++.|.+..
T Consensus 94 S~~D~aK~ia~ 104 (374)
T cd08189 94 SVIDCAKAIAA 104 (374)
T ss_pred cHHHHHHHHHH
Confidence 77788877654
No 495
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=21.79 E-value=1.9e+02 Score=29.78 Aligned_cols=21 Identities=14% Similarity=-0.031 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHHHHHHhhhcc
Q 023816 187 PVKLSDVKRIKDYLTRDVNLG 207 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~~~~~~~ 207 (276)
|.-.+|++..+..|...+...
T Consensus 183 ~~hveWvKa~l~l~~eL~~YV 203 (480)
T KOG2675|consen 183 PRHVEWVKAYLALFLELQAYV 203 (480)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 444566666666555544443
No 496
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=21.79 E-value=1.9e+02 Score=25.07 Aligned_cols=32 Identities=9% Similarity=0.127 Sum_probs=28.0
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHH
Q 023816 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGR 63 (276)
Q Consensus 32 VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~ 63 (276)
|+|||-.--+...+.+.|++.|+++..+.+..
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~ 32 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPE 32 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChH
Confidence 58889888899999999999999999988643
No 497
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=21.74 E-value=5.4e+02 Score=24.75 Aligned_cols=65 Identities=22% Similarity=0.179 Sum_probs=42.5
Q ss_pred cEEEEEeCCHH----HHHHHHHHHhhCCCEEEEEC---------CHHHHHHHhcccccccccCCCCCceeEEEEecCCCC
Q 023816 30 VHVLAVDDSFV----DRKVIERLLTISSCKVTAVD---------SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG 96 (276)
Q Consensus 30 ~~VLIVdD~~~----~~~~L~~~L~~~g~~v~~a~---------~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~ 96 (276)
-++|||-|..+ ..+.+...|+..|.++..++ +.+++++.+ ++.++|+|| -+.|
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~-----------~~~~~D~II---aiGG 92 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAA-----------RAAGADGVI---GFGG 92 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHH-----------HhcCCCEEE---EeCC
Confidence 37888877653 23556677888887776543 233455555 556789887 3567
Q ss_pred CCHHHHHHHHHh
Q 023816 97 MTGYELLKKIKV 108 (276)
Q Consensus 97 ~~G~ell~~Ir~ 108 (276)
.+-+++.|.+..
T Consensus 93 Gs~iD~aK~ia~ 104 (376)
T cd08193 93 GSSMDVAKLVAV 104 (376)
T ss_pred chHHHHHHHHHH
Confidence 777788887764
No 498
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=21.70 E-value=6.3e+02 Score=23.18 Aligned_cols=45 Identities=9% Similarity=0.161 Sum_probs=26.7
Q ss_pred CCeEEEEecC----CCHHH-HHHHHhcCCCeEEeCCCC--HHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSE----NILAR-IDRCLEDGAEDFIVKPVK--LSDVKRIKDYLTR 202 (276)
Q Consensus 157 ~ipiV~ls~~----~~~~~-~~~al~~Ga~d~l~KPv~--~~~L~~~~~~l~~ 202 (276)
.+|+|++... ..... .....+.|+ .++..+-+ .++|.+.+..+..
T Consensus 272 g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~-g~~~~~~~~~~~~l~~~i~~ll~ 323 (357)
T PRK00726 272 GLPAILVPLPHAADDHQTANARALVDAGA-ALLIPQSDLTPEKLAEKLLELLS 323 (357)
T ss_pred CCCEEEecCCCCCcCcHHHHHHHHHHCCC-EEEEEcccCCHHHHHHHHHHHHc
Confidence 7899887542 22222 233445565 67776655 7888777766554
No 499
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=21.69 E-value=1.8e+02 Score=20.66 Aligned_cols=67 Identities=15% Similarity=0.101 Sum_probs=42.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC-CHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM-TGYELLKKI 106 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~-~G~ell~~I 106 (276)
+..+|..+|-++...+..++.+...+..+...+- + .+ .+....||+|++-..+--. +-..+++++
T Consensus 18 ~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~-~----~l---------~~~~~sfD~v~~~~~~~~~~~~~~~l~e~ 83 (95)
T PF08241_consen 18 GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDA-E----DL---------PFPDNSFDVVFSNSVLHHLEDPEAALREI 83 (95)
T ss_dssp TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBT-T----SS---------SS-TT-EEEEEEESHGGGSSHHHHHHHHH
T ss_pred cCCEEEEEeCCHHHHHHHHhcccccCchheeehH-H----hC---------ccccccccccccccceeeccCHHHHHHHH
Confidence 3678889999998888888888777666333321 1 11 2355679999987755433 555677777
Q ss_pred Hh
Q 023816 107 KV 108 (276)
Q Consensus 107 r~ 108 (276)
.+
T Consensus 84 ~r 85 (95)
T PF08241_consen 84 YR 85 (95)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 500
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=21.64 E-value=4e+02 Score=24.88 Aligned_cols=57 Identities=16% Similarity=0.271 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhCCCEEEE---E----CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhC
Q 023816 41 DRKVIERLLTISSCKVTA---V----DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTT 110 (276)
Q Consensus 41 ~~~~L~~~L~~~g~~v~~---a----~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~ 110 (276)
..+.+++.++..|.++.. . .+....+.++ ...++|.|++= ..+-++..+++.+++..
T Consensus 150 ~~~~~~~~~~~~G~~vv~~~~~~~~~~D~s~~v~~l-----------~~~~pDav~~~--~~~~~~~~~~~~~~~~G 213 (359)
T TIGR03407 150 ANKIIKAYLKSLGGTVVGEDYTPLGHTDFQTIINKI-----------KAFKPDVVFNT--LNGDSNVAFFKQLKNAG 213 (359)
T ss_pred HHHHHHHHHHHcCCEEEeeEEecCChHhHHHHHHHH-----------HHhCCCEEEEe--ccCCCHHHHHHHHHHcC
Confidence 456678888999988754 2 2445556666 56679998853 34556678888888753
Done!