Query 023816
Match_columns 276
No_of_seqs 190 out of 1808
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 13:16:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023816.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023816hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 99.9 3.4E-27 1.2E-31 194.6 14.8 120 28-201 11-131 (134)
2 3gl9_A Response regulator; bet 99.9 8.4E-23 2.9E-27 158.6 17.5 118 30-201 3-120 (122)
3 3t6k_A Response regulator rece 99.9 5.5E-23 1.9E-27 162.4 16.4 122 27-202 2-123 (136)
4 3rqi_A Response regulator prot 99.9 3.1E-23 1.1E-27 172.8 13.5 122 24-201 2-123 (184)
5 2r25_B Osmosensing histidine p 99.9 1.6E-22 5.3E-27 159.3 15.0 122 29-201 2-125 (133)
6 3f6p_A Transcriptional regulat 99.9 3E-22 1E-26 154.7 15.6 115 30-201 3-117 (120)
7 1dbw_A Transcriptional regulat 99.9 8.4E-22 2.9E-26 152.2 18.2 119 28-202 2-120 (126)
8 2lpm_A Two-component response 99.9 8.4E-25 2.9E-29 178.6 1.2 112 28-200 7-119 (123)
9 3m6m_D Sensory/regulatory prot 99.9 4.1E-22 1.4E-26 159.0 15.2 123 27-201 12-134 (143)
10 3crn_A Response regulator rece 99.9 8.8E-22 3E-26 154.0 16.8 118 29-202 3-120 (132)
11 3jte_A Response regulator rece 99.9 1.6E-21 5.5E-26 153.3 17.8 125 27-205 1-125 (143)
12 2pl1_A Transcriptional regulat 99.9 1.7E-21 5.9E-26 148.3 16.9 117 30-202 1-117 (121)
13 1i3c_A Response regulator RCP1 99.9 2E-21 6.9E-26 155.2 18.0 131 25-202 4-136 (149)
14 3h1g_A Chemotaxis protein CHEY 99.9 6.9E-22 2.4E-26 154.0 14.8 122 27-201 3-125 (129)
15 3hv2_A Response regulator/HD d 99.9 1.7E-21 5.8E-26 155.9 17.2 122 27-204 12-134 (153)
16 3kto_A Response regulator rece 99.9 8E-22 2.7E-26 155.0 14.9 121 28-204 5-127 (136)
17 3eod_A Protein HNR; response r 99.9 1.6E-21 5.5E-26 151.0 15.9 121 26-202 4-125 (130)
18 1srr_A SPO0F, sporulation resp 99.9 1.6E-21 5.5E-26 149.8 15.7 116 29-200 3-118 (124)
19 3gt7_A Sensor protein; structu 99.9 3.7E-21 1.3E-25 154.9 18.0 122 28-203 6-127 (154)
20 1jbe_A Chemotaxis protein CHEY 99.9 4.9E-21 1.7E-25 147.5 17.6 121 28-202 3-124 (128)
21 3heb_A Response regulator rece 99.9 3.8E-21 1.3E-25 153.3 17.5 130 29-205 4-137 (152)
22 1xhf_A DYE resistance, aerobic 99.9 4.1E-21 1.4E-25 147.0 16.6 118 28-202 2-119 (123)
23 3r0j_A Possible two component 99.9 2.4E-21 8.2E-26 168.5 16.8 123 25-203 19-141 (250)
24 1zgz_A Torcad operon transcrip 99.9 5.6E-21 1.9E-25 146.0 16.7 116 30-202 3-118 (122)
25 1tmy_A CHEY protein, TMY; chem 99.9 2.4E-21 8.2E-26 147.7 14.6 116 29-200 2-118 (120)
26 3i42_A Response regulator rece 99.9 7.8E-22 2.7E-26 152.2 11.8 120 27-201 1-120 (127)
27 2zay_A Response regulator rece 99.9 1.9E-21 6.6E-26 153.5 14.1 126 22-203 1-128 (147)
28 3lua_A Response regulator rece 99.9 1.6E-21 5.6E-26 153.1 13.6 118 29-202 4-126 (140)
29 4e7p_A Response regulator; DNA 99.9 6.6E-21 2.3E-25 152.0 17.2 123 25-203 16-140 (150)
30 3grc_A Sensor protein, kinase; 99.9 1.5E-21 5E-26 153.0 13.1 121 27-203 4-127 (140)
31 3b2n_A Uncharacterized protein 99.9 3E-21 1E-25 151.1 14.8 118 29-202 3-122 (133)
32 2rjn_A Response regulator rece 99.9 9.2E-21 3.2E-25 151.4 17.7 122 27-204 5-127 (154)
33 3cnb_A DNA-binding response re 99.9 6.5E-21 2.2E-25 148.6 16.3 123 25-203 4-130 (143)
34 3kht_A Response regulator; PSI 99.9 6.7E-21 2.3E-25 150.3 16.3 122 28-203 4-128 (144)
35 3cfy_A Putative LUXO repressor 99.9 3.5E-21 1.2E-25 152.2 14.8 118 30-203 5-122 (137)
36 1p6q_A CHEY2; chemotaxis, sign 99.9 2.5E-21 8.4E-26 149.4 13.5 121 28-202 5-126 (129)
37 3mm4_A Histidine kinase homolo 99.9 2.9E-21 9.9E-26 164.8 15.1 135 26-203 58-196 (206)
38 3hdg_A Uncharacterized protein 99.9 2.7E-21 9.1E-26 151.0 13.6 121 28-204 6-126 (137)
39 3luf_A Two-component system re 99.9 4.4E-21 1.5E-25 170.3 16.6 123 28-204 123-246 (259)
40 2ayx_A Sensor kinase protein R 99.9 3E-21 1E-25 170.3 15.2 122 26-203 126-247 (254)
41 3ilh_A Two component response 99.9 8.1E-21 2.8E-25 148.5 16.0 128 28-202 8-138 (146)
42 1k68_A Phytochrome response re 99.9 1.9E-20 6.3E-25 144.7 17.7 128 29-203 2-131 (140)
43 3hdv_A Response regulator; PSI 99.9 9E-21 3.1E-25 147.8 16.0 121 28-203 6-127 (136)
44 3snk_A Response regulator CHEY 99.9 5.7E-22 1.9E-26 155.2 9.2 118 27-200 12-130 (135)
45 2a9o_A Response regulator; ess 99.9 7E-21 2.4E-25 144.3 14.6 115 30-201 2-116 (120)
46 4dad_A Putative pilus assembly 99.9 2.7E-21 9.3E-26 152.9 12.8 128 21-203 12-141 (146)
47 1dcf_A ETR1 protein; beta-alph 99.9 1.9E-20 6.6E-25 146.3 17.4 124 27-202 5-128 (136)
48 3f6c_A Positive transcription 99.9 1.8E-21 6.2E-26 151.0 11.3 119 29-203 1-120 (134)
49 1qkk_A DCTD, C4-dicarboxylate 99.9 1E-20 3.6E-25 151.3 16.0 122 29-206 3-124 (155)
50 3hzh_A Chemotaxis response reg 99.9 6.2E-21 2.1E-25 154.0 14.6 120 25-200 32-154 (157)
51 1k66_A Phytochrome response re 99.9 1.4E-20 4.9E-25 147.2 15.6 131 27-203 4-138 (149)
52 2qzj_A Two-component response 99.9 1.2E-20 4.2E-25 148.9 15.1 118 29-203 4-121 (136)
53 1mvo_A PHOP response regulator 99.9 1E-20 3.4E-25 147.2 14.4 118 29-202 3-120 (136)
54 1yio_A Response regulatory pro 99.9 9.3E-21 3.2E-25 158.8 15.2 119 28-202 3-121 (208)
55 2jba_A Phosphate regulon trans 99.9 4.2E-21 1.4E-25 147.3 12.0 119 30-202 3-121 (127)
56 1mb3_A Cell division response 99.9 6.6E-21 2.3E-25 145.6 13.1 118 30-201 2-119 (124)
57 2qr3_A Two-component system re 99.9 1.7E-20 5.9E-25 146.1 15.5 119 28-202 2-125 (140)
58 3h5i_A Response regulator/sens 99.9 6.5E-21 2.2E-25 150.4 13.2 119 28-203 4-124 (140)
59 3c3m_A Response regulator rece 99.9 1.4E-20 4.8E-25 148.2 15.1 120 29-202 3-122 (138)
60 3kcn_A Adenylate cyclase homol 99.9 1.1E-20 3.9E-25 150.8 14.5 120 29-205 4-125 (151)
61 3n0r_A Response regulator; sig 99.9 1.6E-21 5.3E-26 177.1 10.3 116 29-203 160-277 (286)
62 1dz3_A Stage 0 sporulation pro 99.9 1.3E-20 4.6E-25 146.2 14.1 116 30-201 3-121 (130)
63 2qxy_A Response regulator; reg 99.9 2.9E-20 1E-24 145.9 16.2 117 29-202 4-120 (142)
64 1zh2_A KDP operon transcriptio 99.9 1.5E-20 5.1E-25 142.7 14.1 116 30-202 2-117 (121)
65 3cg0_A Response regulator rece 99.8 3.2E-20 1.1E-24 144.6 15.6 120 27-203 7-128 (140)
66 3nhm_A Response regulator; pro 99.8 2.3E-20 7.9E-25 144.6 14.6 119 29-203 4-122 (133)
67 1a04_A Nitrate/nitrite respons 99.8 2.4E-20 8.3E-25 157.4 15.9 121 27-203 3-125 (215)
68 3cg4_A Response regulator rece 99.8 1.2E-20 4E-25 147.8 12.5 121 27-203 5-127 (142)
69 3eul_A Possible nitrate/nitrit 99.8 3.8E-20 1.3E-24 147.5 15.6 125 23-203 9-135 (152)
70 3lte_A Response regulator; str 99.8 3.5E-20 1.2E-24 143.4 14.8 121 27-202 4-124 (132)
71 3n53_A Response regulator rece 99.8 6.9E-21 2.3E-25 149.5 10.9 122 28-204 2-123 (140)
72 3a10_A Response regulator; pho 99.8 1.4E-20 4.7E-25 142.7 12.0 113 30-200 2-114 (116)
73 3eq2_A Probable two-component 99.8 3.6E-21 1.2E-25 178.7 10.7 117 29-201 5-122 (394)
74 3cu5_A Two component transcrip 99.8 2.2E-20 7.4E-25 148.3 13.3 118 30-203 3-123 (141)
75 3eqz_A Response regulator; str 99.8 2.1E-20 7.1E-25 144.4 12.8 118 28-202 2-124 (135)
76 2jk1_A HUPR, hydrogenase trans 99.8 5.3E-20 1.8E-24 144.7 15.2 118 30-204 2-120 (139)
77 1kgs_A DRRD, DNA binding respo 99.8 4.2E-20 1.4E-24 156.2 15.3 119 29-203 2-120 (225)
78 3dzd_A Transcriptional regulat 99.8 1.3E-20 4.4E-25 177.3 13.4 118 31-204 2-119 (368)
79 3q9s_A DNA-binding response re 99.8 2.2E-20 7.6E-25 164.0 13.8 121 26-203 34-154 (249)
80 3cz5_A Two-component response 99.8 8.1E-20 2.8E-24 145.8 15.3 120 28-203 4-125 (153)
81 1ys7_A Transcriptional regulat 99.8 3.5E-20 1.2E-24 157.4 13.1 121 27-203 5-125 (233)
82 2qvg_A Two component response 99.8 1.3E-19 4.3E-24 142.1 14.8 124 28-199 6-131 (143)
83 2gkg_A Response regulator homo 99.8 6E-20 2.1E-24 139.6 12.6 118 29-201 5-123 (127)
84 1s8n_A Putative antiterminator 99.8 7.2E-20 2.5E-24 153.8 14.1 116 29-201 13-129 (205)
85 2qsj_A DNA-binding response re 99.8 7.9E-20 2.7E-24 145.6 12.9 120 28-203 2-124 (154)
86 2rdm_A Response regulator rece 99.8 3.3E-19 1.1E-23 137.5 16.0 119 27-203 3-123 (132)
87 1ny5_A Transcriptional regulat 99.8 9.2E-20 3.1E-24 172.1 15.2 119 30-204 1-119 (387)
88 3kyj_B CHEY6 protein, putative 99.8 7.7E-20 2.6E-24 144.7 11.0 114 23-193 7-125 (145)
89 3klo_A Transcriptional regulat 99.8 3.8E-20 1.3E-24 158.3 9.2 122 26-203 4-129 (225)
90 1w25_A Stalked-cell differenti 99.8 2.8E-19 9.6E-24 168.2 15.6 120 30-203 2-121 (459)
91 2qv0_A Protein MRKE; structura 99.8 6.6E-19 2.3E-23 138.3 15.2 119 28-204 8-128 (143)
92 3c97_A Signal transduction his 99.8 1.9E-19 6.6E-24 141.6 11.9 120 29-202 10-129 (140)
93 3bre_A Probable two-component 99.8 2.1E-19 7.4E-24 162.8 12.6 119 28-200 17-136 (358)
94 2oqr_A Sensory transduction pr 99.8 3.4E-19 1.1E-23 151.4 12.7 118 29-203 4-121 (230)
95 1dc7_A NTRC, nitrogen regulati 99.8 6.8E-21 2.3E-25 144.8 1.2 119 28-202 2-120 (124)
96 3sy8_A ROCR; TIM barrel phosph 99.8 4.6E-19 1.6E-23 166.3 12.5 120 28-203 2-128 (400)
97 1p2f_A Response regulator; DRR 99.8 2.7E-18 9.2E-23 145.3 15.9 116 29-203 2-117 (220)
98 3c3w_A Two component transcrip 99.8 1.1E-19 3.9E-24 156.0 7.5 119 29-203 1-121 (225)
99 2j48_A Two-component sensor ki 99.8 1E-18 3.5E-23 130.2 10.7 113 30-199 2-114 (119)
100 2b4a_A BH3024; flavodoxin-like 99.8 8.9E-19 3.1E-23 137.1 10.8 116 25-200 11-128 (138)
101 2gwr_A DNA-binding response re 99.8 1.3E-18 4.4E-23 149.9 12.7 117 29-202 5-121 (238)
102 3t8y_A CHEB, chemotaxis respon 99.8 3.4E-18 1.1E-22 139.5 14.5 109 28-193 24-136 (164)
103 2pln_A HP1043, response regula 99.8 8.9E-18 3.1E-22 131.2 15.6 118 24-201 13-131 (137)
104 1qo0_D AMIR; binding protein, 99.8 2.8E-18 9.5E-23 143.1 10.0 113 27-200 10-122 (196)
105 2hqr_A Putative transcriptiona 99.7 2.8E-17 9.5E-22 139.3 15.4 114 30-203 1-115 (223)
106 1a2o_A CHEB methylesterase; ba 99.7 6.3E-17 2.2E-21 151.5 14.6 105 28-189 2-110 (349)
107 3luf_A Two-component system re 99.7 3E-17 1E-21 145.5 11.0 104 29-191 4-108 (259)
108 2vyc_A Biodegradative arginine 99.7 2.4E-16 8.3E-21 161.0 10.5 118 30-203 1-134 (755)
109 1w25_A Stalked-cell differenti 99.2 2.6E-10 9E-15 107.1 16.6 118 28-201 151-268 (459)
110 3cwo_X Beta/alpha-barrel prote 99.2 7.7E-12 2.6E-16 105.6 4.3 87 54-196 6-94 (237)
111 2ayx_A Sensor kinase protein R 97.6 0.00032 1.1E-08 61.2 9.7 57 25-99 7-63 (254)
112 3n75_A LDC, lysine decarboxyla 97.4 0.0002 6.7E-09 73.4 7.1 94 42-193 19-112 (715)
113 2yxb_A Coenzyme B12-dependent 96.1 0.12 4.1E-06 43.1 13.1 118 28-201 17-143 (161)
114 3cwo_X Beta/alpha-barrel prote 95.8 0.021 7E-07 47.5 6.9 40 157-196 174-219 (237)
115 3q7r_A Transcriptional regulat 94.6 0.73 2.5E-05 37.2 12.1 107 29-203 12-118 (121)
116 1ccw_A Protein (glutamate muta 93.3 1.2 4E-05 35.9 11.4 62 36-108 14-80 (137)
117 3q58_A N-acetylmannosamine-6-p 91.3 1.3 4.6E-05 38.8 10.1 88 39-185 115-209 (229)
118 1wv2_A Thiazole moeity, thiazo 90.9 1.2 3.9E-05 40.9 9.5 90 36-185 119-215 (265)
119 3igs_A N-acetylmannosamine-6-p 89.5 2.5 8.5E-05 37.1 10.2 88 39-185 115-209 (232)
120 2ekc_A AQ_1548, tryptophan syn 88.2 1.4 4.6E-05 39.2 7.7 47 157-203 94-146 (262)
121 2htm_A Thiazole biosynthesis p 86.7 2.4 8.2E-05 38.9 8.4 90 37-185 109-206 (268)
122 3vnd_A TSA, tryptophan synthas 86.5 1.2 4.1E-05 40.3 6.3 46 157-202 95-146 (267)
123 1req_A Methylmalonyl-COA mutas 85.4 7.3 0.00025 40.2 12.1 116 29-200 596-721 (727)
124 1qop_A Tryptophan synthase alp 84.9 1.9 6.7E-05 38.2 6.8 47 157-203 94-146 (268)
125 2i2x_B MTAC, methyltransferase 84.7 9.4 0.00032 33.7 11.2 72 29-111 123-203 (258)
126 2xij_A Methylmalonyl-COA mutas 84.6 11 0.00038 39.1 13.1 114 29-198 604-726 (762)
127 1geq_A Tryptophan synthase alp 84.6 3 0.0001 35.7 7.8 45 157-201 80-130 (248)
128 3f4w_A Putative hexulose 6 pho 82.2 6.8 0.00023 32.6 8.8 28 157-185 159-186 (211)
129 3nav_A Tryptophan synthase alp 81.1 2.3 8E-05 38.5 5.9 46 157-202 97-148 (271)
130 3qja_A IGPS, indole-3-glycerol 80.9 17 0.00059 32.6 11.5 30 157-186 213-242 (272)
131 1y80_A Predicted cobalamin bin 80.6 6.1 0.00021 33.3 8.0 70 29-109 88-166 (210)
132 3fwz_A Inner membrane protein 77.0 23 0.0008 27.3 10.1 40 29-69 7-46 (140)
133 3ezx_A MMCP 1, monomethylamine 76.6 11 0.00037 32.5 8.5 70 29-109 92-172 (215)
134 1xrs_B D-lysine 5,6-aminomutas 76.0 31 0.0011 31.1 11.6 69 29-108 120-209 (262)
135 3fkq_A NTRC-like two-domain pr 75.5 5.1 0.00017 36.8 6.4 57 29-96 21-80 (373)
136 1ujp_A Tryptophan synthase alp 75.2 5.1 0.00017 36.0 6.2 47 157-203 91-143 (271)
137 3rc1_A Sugar 3-ketoreductase; 74.0 14 0.00047 33.4 8.9 45 158-202 90-138 (350)
138 3gjy_A Spermidine synthase; AP 73.8 12 0.00041 34.5 8.5 70 28-108 112-188 (317)
139 3ffs_A Inosine-5-monophosphate 73.0 52 0.0018 31.3 12.9 29 157-185 246-274 (400)
140 3rht_A (gatase1)-like protein; 72.6 1.8 6E-05 39.1 2.5 33 29-61 4-38 (259)
141 2gek_A Phosphatidylinositol ma 71.7 24 0.00081 30.9 9.6 44 155-202 305-348 (406)
142 3dr5_A Putative O-methyltransf 71.3 19 0.00065 30.4 8.7 66 29-107 81-150 (221)
143 1yad_A Regulatory protein TENI 71.2 33 0.0011 28.7 10.1 28 157-185 164-191 (221)
144 3kp1_A D-ornithine aminomutase 71.1 29 0.00098 35.9 11.1 69 29-108 602-686 (763)
145 3tsm_A IGPS, indole-3-glycerol 69.9 63 0.0021 29.1 13.0 87 43-185 159-248 (272)
146 1xi3_A Thiamine phosphate pyro 69.1 35 0.0012 28.0 9.6 28 157-185 162-189 (215)
147 2q5c_A NTRC family transcripti 67.3 56 0.0019 27.5 12.0 74 29-111 4-92 (196)
148 2bfw_A GLGA glycogen synthase; 67.2 44 0.0015 26.2 11.4 41 157-202 139-179 (200)
149 2gjl_A Hypothetical protein PA 66.0 55 0.0019 29.3 11.0 29 157-185 172-200 (328)
150 1zh8_A Oxidoreductase; TM0312, 65.8 22 0.00074 31.9 8.3 45 158-202 83-131 (340)
151 4gmf_A Yersiniabactin biosynth 64.2 23 0.00078 33.0 8.3 34 169-202 84-117 (372)
152 3inp_A D-ribulose-phosphate 3- 63.3 16 0.00056 32.4 6.8 45 157-201 86-131 (246)
153 1xm3_A Thiazole biosynthesis p 62.9 11 0.00036 33.5 5.5 30 157-186 178-207 (264)
154 3fro_A GLGA glycogen synthase; 62.7 79 0.0027 27.6 12.4 44 154-202 351-394 (439)
155 4fb5_A Probable oxidoreductase 62.6 21 0.00071 31.8 7.4 44 158-201 95-142 (393)
156 3l9w_A Glutathione-regulated p 62.5 23 0.00077 33.5 8.0 27 157-185 95-121 (413)
157 3bo9_A Putative nitroalkan dio 61.3 69 0.0024 28.9 10.8 29 157-185 176-204 (326)
158 3ec7_A Putative dehydrogenase; 61.1 22 0.00077 32.1 7.5 46 158-203 90-137 (357)
159 2w6r_A Imidazole glycerol phos 60.2 27 0.00092 29.9 7.5 30 157-186 200-229 (266)
160 4fo4_A Inosine 5'-monophosphat 60.1 65 0.0022 30.1 10.6 29 157-185 211-239 (366)
161 3usb_A Inosine-5'-monophosphat 60.1 84 0.0029 30.4 11.8 30 157-186 359-388 (511)
162 2z6i_A Trans-2-enoyl-ACP reduc 60.0 63 0.0021 29.1 10.3 29 157-185 162-190 (332)
163 2i7c_A Spermidine synthase; tr 59.9 48 0.0016 29.0 9.3 68 29-108 102-180 (283)
164 3c3p_A Methyltransferase; NP_9 59.9 44 0.0015 27.1 8.5 65 29-108 81-148 (210)
165 3p9n_A Possible methyltransfer 59.7 39 0.0013 26.9 8.0 68 30-108 68-139 (189)
166 2oo3_A Protein involved in cat 59.2 11 0.00038 34.5 5.0 71 29-108 113-184 (283)
167 3bw2_A 2-nitropropane dioxygen 59.1 1.1E+02 0.0037 28.0 11.9 29 157-185 208-236 (369)
168 3o63_A Probable thiamine-phosp 58.8 37 0.0013 29.9 8.3 28 157-185 191-218 (243)
169 1sui_A Caffeoyl-COA O-methyltr 58.1 49 0.0017 28.3 8.8 72 29-108 104-178 (247)
170 2ift_A Putative methylase HI07 57.7 29 0.00098 28.4 7.0 68 30-108 77-149 (201)
171 1rd5_A Tryptophan synthase alp 57.4 11 0.00038 32.8 4.6 44 157-201 94-140 (262)
172 1y0e_A Putative N-acetylmannos 57.4 74 0.0025 26.3 9.6 30 157-186 175-204 (223)
173 3c3y_A Pfomt, O-methyltransfer 57.2 33 0.0011 28.9 7.5 71 29-107 95-168 (237)
174 2fpo_A Methylase YHHF; structu 56.9 45 0.0016 27.2 8.1 66 31-108 79-146 (202)
175 2xci_A KDO-transferase, 3-deox 56.5 36 0.0012 30.8 8.0 51 150-203 295-346 (374)
176 3m2t_A Probable dehydrogenase; 56.3 37 0.0013 30.7 8.0 45 158-202 69-117 (359)
177 3u81_A Catechol O-methyltransf 56.2 23 0.00079 29.2 6.2 58 29-93 83-143 (221)
178 3beo_A UDP-N-acetylglucosamine 56.2 87 0.003 27.0 10.2 42 155-202 299-341 (375)
179 3tr6_A O-methyltransferase; ce 56.1 38 0.0013 27.6 7.5 70 29-107 89-161 (225)
180 4e5v_A Putative THUA-like prot 56.0 8.2 0.00028 34.8 3.6 62 28-98 3-72 (281)
181 2avd_A Catechol-O-methyltransf 55.9 55 0.0019 26.7 8.4 71 29-108 94-167 (229)
182 1geq_A Tryptophan synthase alp 55.7 59 0.002 27.5 8.9 30 157-186 191-220 (248)
183 1vzw_A Phosphoribosyl isomeras 55.7 35 0.0012 28.9 7.4 29 157-185 190-221 (244)
184 1uir_A Polyamine aminopropyltr 55.4 76 0.0026 28.2 9.9 68 29-108 101-183 (314)
185 2tps_A Protein (thiamin phosph 55.4 46 0.0016 27.6 8.0 28 157-185 172-199 (227)
186 2v82_A 2-dehydro-3-deoxy-6-pho 55.2 21 0.00072 29.7 5.8 29 157-186 148-176 (212)
187 3u3x_A Oxidoreductase; structu 55.2 25 0.00086 31.9 6.8 44 158-201 89-136 (361)
188 2pyy_A Ionotropic glutamate re 54.2 29 0.00099 27.2 6.2 53 24-92 107-159 (228)
189 3v5n_A Oxidoreductase; structu 54.1 36 0.0012 31.6 7.7 45 158-202 111-159 (417)
190 3iwp_A Copper homeostasis prot 53.8 19 0.00064 33.2 5.6 63 36-109 135-205 (287)
191 3tfw_A Putative O-methyltransf 53.6 58 0.002 27.6 8.5 68 29-108 88-158 (248)
192 3khj_A Inosine-5-monophosphate 53.3 82 0.0028 29.2 10.1 29 157-185 207-235 (361)
193 3l4e_A Uncharacterized peptida 53.2 65 0.0022 27.4 8.7 64 29-109 27-100 (206)
194 3ajx_A 3-hexulose-6-phosphate 53.1 12 0.0004 31.0 3.8 45 157-202 53-101 (207)
195 2bdq_A Copper homeostasis prot 52.0 27 0.00092 31.0 6.1 63 36-109 100-174 (224)
196 4ew6_A D-galactose-1-dehydroge 51.8 51 0.0017 29.5 8.2 45 158-202 82-130 (330)
197 1ka9_F Imidazole glycerol phos 51.8 38 0.0013 28.7 7.0 37 157-193 196-238 (252)
198 3qhp_A Type 1 capsular polysac 50.6 79 0.0027 23.9 8.4 108 28-203 31-140 (166)
199 3c48_A Predicted glycosyltrans 50.6 61 0.0021 28.7 8.5 47 152-202 344-390 (438)
200 1h1y_A D-ribulose-5-phosphate 50.5 53 0.0018 27.8 7.7 28 157-185 173-200 (228)
201 1wa3_A 2-keto-3-deoxy-6-phosph 50.1 99 0.0034 25.2 9.2 51 49-109 7-58 (205)
202 3cea_A MYO-inositol 2-dehydrog 50.0 82 0.0028 27.7 9.2 33 27-59 6-39 (346)
203 1iy9_A Spermidine synthase; ro 49.9 58 0.002 28.4 8.1 68 29-108 99-177 (275)
204 1wa3_A 2-keto-3-deoxy-6-phosph 49.8 22 0.00076 29.3 5.1 28 157-185 150-177 (205)
205 3okp_A GDP-mannose-dependent a 49.6 47 0.0016 28.7 7.4 45 153-202 299-343 (394)
206 1eep_A Inosine 5'-monophosphat 48.9 1.3E+02 0.0044 27.8 10.7 29 157-185 256-284 (404)
207 3q2i_A Dehydrogenase; rossmann 48.7 77 0.0026 28.2 8.8 45 158-202 76-124 (354)
208 3bul_A Methionine synthase; tr 48.7 63 0.0022 32.3 8.9 70 29-109 98-176 (579)
209 3qz6_A HPCH/HPAI aldolase; str 48.0 93 0.0032 27.4 9.2 76 81-200 34-110 (261)
210 3ovp_A Ribulose-phosphate 3-ep 47.8 43 0.0015 29.0 6.8 28 157-185 169-196 (228)
211 2ho3_A Oxidoreductase, GFO/IDH 47.7 1.2E+02 0.004 26.6 9.8 45 158-202 63-111 (325)
212 3iwt_A 178AA long hypothetical 47.2 30 0.001 28.3 5.4 47 40-92 40-89 (178)
213 2iuy_A Avigt4, glycosyltransfe 47.2 30 0.001 29.8 5.7 34 28-61 2-55 (342)
214 3ntv_A MW1564 protein; rossman 46.9 78 0.0027 26.3 8.1 66 29-108 95-164 (232)
215 3r2g_A Inosine 5'-monophosphat 46.8 1.9E+02 0.0063 27.1 12.8 27 159-185 201-227 (361)
216 3orh_A Guanidinoacetate N-meth 46.4 57 0.0019 27.4 7.2 54 29-93 83-137 (236)
217 3e18_A Oxidoreductase; dehydro 46.4 82 0.0028 28.3 8.7 45 158-202 66-114 (359)
218 1tqj_A Ribulose-phosphate 3-ep 46.2 26 0.00088 30.2 5.1 43 158-201 63-109 (230)
219 2iw1_A Lipopolysaccharide core 46.0 51 0.0018 28.3 7.0 44 156-203 293-337 (374)
220 2c6q_A GMP reductase 2; TIM ba 45.8 1.8E+02 0.0062 26.7 13.4 32 157-188 223-255 (351)
221 1xj5_A Spermidine synthase 1; 45.8 77 0.0026 28.8 8.4 69 29-108 144-223 (334)
222 2yw3_A 4-hydroxy-2-oxoglutarat 45.6 1.2E+02 0.0043 25.5 9.3 73 51-184 102-177 (207)
223 3tha_A Tryptophan synthase alp 45.2 30 0.001 31.0 5.5 46 157-202 88-139 (252)
224 4e38_A Keto-hydroxyglutarate-a 45.2 1.6E+02 0.0054 25.8 10.1 92 45-193 27-119 (232)
225 3ezy_A Dehydrogenase; structur 45.1 83 0.0028 27.9 8.4 45 158-202 65-113 (344)
226 2o07_A Spermidine synthase; st 45.0 93 0.0032 27.7 8.7 68 29-108 119-197 (304)
227 3bwc_A Spermidine synthase; SA 44.7 1.3E+02 0.0044 26.5 9.6 69 29-108 119-198 (304)
228 4gud_A Imidazole glycerol phos 44.7 67 0.0023 26.4 7.3 34 31-64 4-37 (211)
229 2v25_A Major cell-binding fact 44.7 51 0.0018 26.4 6.4 56 25-92 144-201 (259)
230 2vpt_A Lipolytic enzyme; ester 44.6 54 0.0019 26.5 6.6 31 28-58 4-44 (215)
231 1zx0_A Guanidinoacetate N-meth 44.5 65 0.0022 26.6 7.2 50 31-91 85-135 (236)
232 3gnn_A Nicotinate-nucleotide p 44.3 1.5E+02 0.005 27.2 10.0 25 159-183 254-278 (298)
233 3c1a_A Putative oxidoreductase 44.3 61 0.0021 28.4 7.3 46 157-202 71-118 (315)
234 4had_A Probable oxidoreductase 44.2 55 0.0019 29.0 7.1 46 157-202 86-135 (350)
235 4h08_A Putative hydrolase; GDS 44.2 1.2E+02 0.004 24.0 9.0 78 26-111 17-110 (200)
236 3h2s_A Putative NADH-flavin re 44.1 40 0.0014 27.2 5.7 55 30-95 1-55 (224)
237 1h5y_A HISF; histidine biosynt 44.1 96 0.0033 25.6 8.2 29 157-185 77-105 (253)
238 2pt6_A Spermidine synthase; tr 44.0 1.5E+02 0.005 26.5 10.0 68 29-108 140-218 (321)
239 4fxs_A Inosine-5'-monophosphat 43.9 43 0.0015 32.4 6.7 57 83-185 242-299 (496)
240 3l0g_A Nicotinate-nucleotide p 43.8 73 0.0025 29.4 7.9 44 157-202 207-250 (300)
241 2b2c_A Spermidine synthase; be 43.5 68 0.0023 28.9 7.6 68 29-108 132-210 (314)
242 3axs_A Probable N(2),N(2)-dime 43.4 50 0.0017 31.1 6.9 51 30-92 78-133 (392)
243 4gnr_A ABC transporter substra 43.1 1.3E+02 0.0045 25.9 9.2 66 31-109 146-219 (353)
244 2vws_A YFAU, 2-keto-3-deoxy su 43.0 1.7E+02 0.0059 25.6 12.5 44 157-200 68-112 (267)
245 1thf_D HISF protein; thermophI 43.0 72 0.0025 26.9 7.4 29 157-185 195-223 (253)
246 3cbg_A O-methyltransferase; cy 42.9 67 0.0023 26.8 7.1 70 29-107 97-169 (232)
247 2qfm_A Spermine synthase; sper 42.7 1E+02 0.0035 29.0 8.9 68 30-106 212-296 (364)
248 1ka9_F Imidazole glycerol phos 42.5 78 0.0027 26.7 7.5 30 157-186 75-104 (252)
249 3paj_A Nicotinate-nucleotide p 42.4 79 0.0027 29.4 8.0 43 157-201 231-273 (320)
250 2v5j_A 2,4-dihydroxyhept-2-ENE 42.4 1.9E+02 0.0064 25.9 12.4 44 157-200 89-133 (287)
251 3db2_A Putative NADPH-dependen 42.3 70 0.0024 28.5 7.5 38 165-202 76-115 (354)
252 2fhp_A Methylase, putative; al 42.3 1.2E+02 0.004 23.5 8.7 69 30-107 68-139 (187)
253 1jcn_A Inosine monophosphate d 42.1 1.6E+02 0.0053 28.2 10.3 28 157-184 358-385 (514)
254 3dty_A Oxidoreductase, GFO/IDH 41.9 92 0.0031 28.4 8.4 45 158-202 86-134 (398)
255 1rd5_A Tryptophan synthase alp 41.9 41 0.0014 29.1 5.7 30 157-186 201-230 (262)
256 3abi_A Putative uncharacterize 41.4 70 0.0024 28.9 7.4 51 9-69 4-54 (365)
257 1lst_A Lysine, arginine, ornit 41.2 63 0.0021 25.6 6.4 56 25-92 107-162 (239)
258 1qo2_A Molecule: N-((5-phospho 40.9 83 0.0028 26.5 7.4 37 157-193 188-236 (241)
259 1yxy_A Putative N-acetylmannos 40.6 1.4E+02 0.0047 24.9 8.8 29 157-185 186-214 (234)
260 1inl_A Spermidine synthase; be 40.3 1.2E+02 0.0042 26.6 8.7 68 29-108 114-193 (296)
261 1x1o_A Nicotinate-nucleotide p 40.3 70 0.0024 29.0 7.2 40 161-201 199-238 (286)
262 2p10_A MLL9387 protein; putati 40.2 99 0.0034 28.4 8.2 31 157-187 227-260 (286)
263 2w6r_A Imidazole glycerol phos 40.2 61 0.0021 27.6 6.5 30 157-186 74-103 (266)
264 4avf_A Inosine-5'-monophosphat 40.1 75 0.0025 30.6 7.7 57 83-185 240-297 (490)
265 3tqv_A Nicotinate-nucleotide p 39.9 96 0.0033 28.3 8.0 44 157-202 198-241 (287)
266 3duw_A OMT, O-methyltransferas 39.9 84 0.0029 25.4 7.1 70 29-108 83-155 (223)
267 1o4u_A Type II quinolic acid p 39.8 76 0.0026 28.8 7.3 43 158-202 194-236 (285)
268 3uuw_A Putative oxidoreductase 39.7 1.2E+02 0.0042 26.2 8.6 46 157-202 68-115 (308)
269 1qop_A Tryptophan synthase alp 39.7 71 0.0024 27.9 7.0 30 157-186 205-234 (268)
270 1h5y_A HISF; histidine biosynt 39.2 78 0.0027 26.1 6.9 29 157-185 198-226 (253)
271 3eey_A Putative rRNA methylase 38.8 85 0.0029 24.8 6.8 67 30-108 48-127 (197)
272 3oti_A CALG3; calicheamicin, T 38.7 94 0.0032 27.5 7.8 38 24-61 15-56 (398)
273 2gpy_A O-methyltransferase; st 38.7 1.2E+02 0.0041 24.8 7.9 68 29-108 78-148 (233)
274 1vgv_A UDP-N-acetylglucosamine 38.5 1.5E+02 0.005 25.7 8.8 47 150-202 294-341 (384)
275 3r2g_A Inosine 5'-monophosphat 38.3 66 0.0023 30.2 6.9 57 83-185 111-168 (361)
276 1qdl_B Protein (anthranilate s 37.9 12 0.0004 31.1 1.5 31 32-62 4-34 (195)
277 4avf_A Inosine-5'-monophosphat 37.5 2.8E+02 0.0096 26.5 13.2 29 157-185 332-360 (490)
278 3e9m_A Oxidoreductase, GFO/IDH 37.5 53 0.0018 29.1 5.9 45 158-202 70-116 (330)
279 2esr_A Methyltransferase; stru 37.4 95 0.0033 24.0 6.8 51 30-92 55-108 (177)
280 3f4w_A Putative hexulose 6 pho 37.3 94 0.0032 25.4 7.0 31 171-201 69-100 (211)
281 2yxd_A Probable cobalt-precorr 37.2 1.4E+02 0.0046 22.8 10.4 65 28-109 56-122 (183)
282 3ic5_A Putative saccharopine d 37.1 60 0.0021 23.1 5.2 53 29-93 5-58 (118)
283 4adt_A Pyridoxine biosynthetic 37.1 1E+02 0.0036 28.0 7.8 29 157-185 207-237 (297)
284 2nvw_A Galactose/lactose metab 36.8 53 0.0018 31.4 6.0 45 158-202 109-163 (479)
285 2qjg_A Putative aldolase MJ040 36.8 1.3E+02 0.0043 25.8 8.1 29 157-185 202-236 (273)
286 3lab_A Putative KDPG (2-keto-3 36.7 1.8E+02 0.0062 25.4 9.0 62 84-194 38-99 (217)
287 3euw_A MYO-inositol dehydrogen 36.6 99 0.0034 27.3 7.5 43 159-201 69-113 (344)
288 3jy6_A Transcriptional regulat 36.6 1.3E+02 0.0044 25.0 7.8 52 42-108 26-83 (276)
289 1p0k_A Isopentenyl-diphosphate 36.4 2.4E+02 0.0081 25.3 11.6 30 157-186 251-280 (349)
290 2r60_A Glycosyl transferase, g 36.4 1.1E+02 0.0038 27.9 8.0 47 152-202 377-423 (499)
291 4hkt_A Inositol 2-dehydrogenas 36.4 1.6E+02 0.0053 25.8 8.8 39 164-202 72-112 (331)
292 1ii5_A SLR1257 protein; membra 36.3 71 0.0024 25.0 5.9 52 25-92 112-163 (233)
293 3c0k_A UPF0064 protein YCCW; P 36.2 86 0.003 28.6 7.2 54 30-92 244-301 (396)
294 3hm2_A Precorrin-6Y C5,15-meth 36.1 52 0.0018 25.3 5.0 66 28-108 48-115 (178)
295 1x1o_A Nicotinate-nucleotide p 36.0 1.9E+02 0.0066 26.0 9.4 28 157-185 240-267 (286)
296 3snr_A Extracellular ligand-bi 35.9 80 0.0027 26.9 6.6 23 84-108 190-212 (362)
297 3ajd_A Putative methyltransfer 35.5 1.1E+02 0.0039 26.2 7.6 54 30-92 109-164 (274)
298 3tdn_A FLR symmetric alpha-bet 35.3 86 0.0029 26.6 6.7 29 157-185 79-107 (247)
299 3evn_A Oxidoreductase, GFO/IDH 35.2 41 0.0014 29.8 4.7 45 158-202 68-116 (329)
300 2y88_A Phosphoribosyl isomeras 35.1 85 0.0029 26.3 6.5 29 157-185 193-224 (244)
301 1gox_A (S)-2-hydroxy-acid oxid 34.9 2E+02 0.0067 26.5 9.5 90 41-186 213-309 (370)
302 3c6k_A Spermine synthase; sper 34.8 78 0.0027 30.0 6.8 56 30-94 229-294 (381)
303 3o9z_A Lipopolysaccaride biosy 34.8 69 0.0024 28.4 6.2 47 157-203 72-122 (312)
304 3gnn_A Nicotinate-nucleotide p 34.8 91 0.0031 28.7 7.0 43 157-201 209-251 (298)
305 3mti_A RRNA methylase; SAM-dep 34.6 54 0.0018 25.7 4.9 52 29-92 44-97 (185)
306 3ip3_A Oxidoreductase, putativ 34.6 49 0.0017 29.4 5.1 34 169-202 81-116 (337)
307 2qzs_A Glycogen synthase; glyc 33.5 2.7E+02 0.0091 25.1 10.6 46 152-201 385-439 (485)
308 2fli_A Ribulose-phosphate 3-ep 33.4 1E+02 0.0034 25.4 6.6 28 157-185 170-197 (220)
309 3usb_A Inosine-5'-monophosphat 33.4 1E+02 0.0036 29.8 7.6 58 82-185 266-324 (511)
310 3kux_A Putative oxidoreductase 33.0 1.3E+02 0.0046 26.6 7.9 45 158-202 68-116 (352)
311 1jcn_A Inosine monophosphate d 33.0 1.2E+02 0.0039 29.1 7.8 58 82-185 265-323 (514)
312 3sgz_A Hydroxyacid oxidase 2; 32.9 2.1E+02 0.007 26.7 9.3 94 37-186 201-301 (352)
313 2f6u_A GGGPS, (S)-3-O-geranylg 32.9 34 0.0012 30.2 3.7 27 157-189 61-87 (234)
314 3tql_A Arginine-binding protei 32.8 1.5E+02 0.005 23.0 7.2 57 23-92 103-159 (227)
315 1twd_A Copper homeostasis prot 32.7 1.1E+02 0.0037 27.6 7.1 62 36-108 97-166 (256)
316 3kts_A Glycerol uptake operon 32.7 47 0.0016 28.6 4.5 29 157-185 150-178 (192)
317 3jr2_A Hexulose-6-phosphate sy 32.7 29 0.001 29.3 3.2 11 99-109 46-56 (218)
318 2l82_A Designed protein OR32; 32.6 2E+02 0.0069 23.4 8.2 67 34-111 7-76 (162)
319 4gqa_A NAD binding oxidoreduct 32.5 1.4E+02 0.0048 27.1 8.0 45 157-201 96-144 (412)
320 1ep3_A Dihydroorotate dehydrog 32.5 95 0.0032 27.0 6.6 28 157-184 241-268 (311)
321 2lci_A Protein OR36; structura 32.4 1.3E+02 0.0043 23.9 6.6 28 31-58 53-80 (134)
322 4e38_A Keto-hydroxyglutarate-a 32.4 2E+02 0.0067 25.2 8.6 75 49-184 123-200 (232)
323 1thf_D HISF protein; thermophI 32.4 2E+02 0.0068 24.1 8.5 30 157-186 74-103 (253)
324 3ovp_A Ribulose-phosphate 3-ep 32.3 52 0.0018 28.5 4.8 36 167-202 75-110 (228)
325 1ydw_A AX110P-like protein; st 32.2 1.5E+02 0.005 26.4 8.0 44 158-201 72-119 (362)
326 1viz_A PCRB protein homolog; s 32.1 55 0.0019 28.9 5.0 55 63-185 23-83 (240)
327 3m4x_A NOL1/NOP2/SUN family pr 31.8 91 0.0031 29.9 6.8 51 30-92 131-183 (456)
328 1qpo_A Quinolinate acid phosph 31.6 2E+02 0.0068 25.9 8.7 26 159-184 242-267 (284)
329 2jjm_A Glycosyl transferase, g 31.6 75 0.0026 27.8 5.8 43 156-202 307-349 (394)
330 1rzu_A Glycogen synthase 1; gl 31.6 2.9E+02 0.0098 24.8 11.5 47 151-201 383-438 (485)
331 3cni_A Putative ABC type-2 tra 31.6 49 0.0017 26.2 4.2 53 25-89 6-60 (156)
332 1qpo_A Quinolinate acid phosph 31.5 1.6E+02 0.0055 26.5 8.1 44 157-202 194-237 (284)
333 3lkb_A Probable branched-chain 31.5 1.6E+02 0.0054 25.7 7.9 24 83-108 197-220 (392)
334 2f9f_A First mannosyl transfer 31.3 1.8E+02 0.0063 22.5 9.9 44 157-205 121-164 (177)
335 3td9_A Branched chain amino ac 31.2 2.5E+02 0.0086 24.1 11.4 53 43-108 168-226 (366)
336 2b78_A Hypothetical protein SM 31.2 1E+02 0.0036 28.2 6.9 53 31-92 237-293 (385)
337 3ceu_A Thiamine phosphate pyro 31.2 90 0.0031 26.1 6.0 28 157-185 144-171 (210)
338 3ew7_A LMO0794 protein; Q8Y8U8 31.1 64 0.0022 25.7 4.9 40 30-69 1-40 (221)
339 1q6o_A Humps, 3-keto-L-gulonat 31.1 85 0.0029 26.2 5.8 25 161-185 166-190 (216)
340 3vk5_A MOEO5; TIM barrel, tran 31.1 1.3E+02 0.0046 27.5 7.5 58 85-187 200-257 (286)
341 3oy2_A Glycosyltransferase B73 31.0 1.1E+02 0.0036 27.0 6.7 46 152-202 292-354 (413)
342 2hnk_A SAM-dependent O-methylt 31.0 1.6E+02 0.0054 24.3 7.5 78 29-108 85-169 (239)
343 1i1q_B Anthranilate synthase c 31.0 95 0.0033 25.3 6.0 33 30-62 1-33 (192)
344 3mz0_A Inositol 2-dehydrogenas 31.0 1.5E+02 0.0051 26.2 7.7 39 164-202 75-115 (344)
345 3m6w_A RRNA methylase; rRNA me 30.9 65 0.0022 31.0 5.6 51 30-92 127-178 (464)
346 3i1j_A Oxidoreductase, short c 30.7 1.9E+02 0.0063 23.7 7.9 81 24-108 9-90 (247)
347 1ws6_A Methyltransferase; stru 30.7 1.1E+02 0.0039 23.1 6.1 67 31-107 65-132 (171)
348 3qfm_A SAPH, putative uncharac 30.6 49 0.0017 28.9 4.4 59 23-109 5-65 (270)
349 1tlt_A Putative oxidoreductase 30.5 1.7E+02 0.0058 25.5 7.9 46 157-202 65-114 (319)
350 4fxs_A Inosine-5'-monophosphat 30.5 3.7E+02 0.013 25.8 10.9 30 157-186 334-363 (496)
351 3k9c_A Transcriptional regulat 30.5 1.3E+02 0.0043 25.3 6.9 70 27-111 12-90 (289)
352 3adn_A Spermidine synthase; am 30.4 23 0.00079 31.6 2.2 27 82-108 155-186 (294)
353 2dul_A N(2),N(2)-dimethylguano 30.3 1.3E+02 0.0044 27.8 7.4 63 29-106 71-150 (378)
354 3i6v_A Periplasmic His/Glu/Gln 30.0 1.3E+02 0.0043 24.2 6.6 52 24-92 102-153 (232)
355 3k4h_A Putative transcriptiona 30.0 1.2E+02 0.0042 25.1 6.6 53 42-108 32-90 (292)
356 2y7i_A STM4351; arginine-bindi 29.8 1E+02 0.0035 24.1 5.9 54 25-92 108-161 (229)
357 2ixa_A Alpha-N-acetylgalactosa 29.8 3.4E+02 0.011 25.1 11.5 44 158-201 92-139 (444)
358 2as0_A Hypothetical protein PH 29.8 1.5E+02 0.005 27.0 7.6 54 30-92 241-297 (396)
359 2nzl_A Hydroxyacid oxidase 1; 29.7 1.9E+02 0.0066 27.0 8.6 90 40-185 239-335 (392)
360 1wxx_A TT1595, hypothetical pr 29.4 1.7E+02 0.0056 26.6 7.9 54 30-92 232-287 (382)
361 3cvo_A Methyltransferase-like 29.3 64 0.0022 27.7 4.8 26 29-54 51-76 (202)
362 1fy2_A Aspartyl dipeptidase; s 29.2 1.6E+02 0.0056 25.0 7.4 61 29-109 31-100 (229)
363 2nli_A Lactate oxidase; flavoe 29.2 2.2E+02 0.0076 26.3 8.8 92 39-186 215-313 (368)
364 1sqg_A SUN protein, FMU protei 29.0 58 0.002 30.3 4.8 52 30-92 271-323 (429)
365 3llv_A Exopolyphosphatase-rela 29.0 56 0.0019 24.8 4.0 39 30-69 7-45 (141)
366 1mxs_A KDPG aldolase; 2-keto-3 28.8 2.8E+02 0.0095 23.8 9.0 58 44-111 18-76 (225)
367 3o07_A Pyridoxine biosynthesis 28.8 60 0.002 30.0 4.7 30 157-186 198-229 (291)
368 4fo4_A Inosine 5'-monophosphat 28.7 1.3E+02 0.0045 28.0 7.2 58 82-185 118-176 (366)
369 1rpx_A Protein (ribulose-phosp 28.1 1.3E+02 0.0045 25.0 6.6 95 32-185 95-206 (230)
370 2igt_A SAM dependent methyltra 27.9 88 0.003 28.3 5.7 53 31-92 177-233 (332)
371 2kx7_A Sensor-like histidine k 27.8 62 0.0021 26.2 4.0 48 28-92 6-53 (117)
372 4eyg_A Twin-arginine transloca 27.4 2.8E+02 0.0097 23.6 8.7 61 36-109 147-217 (368)
373 2xxa_A Signal recognition part 27.4 60 0.0021 30.8 4.7 10 83-92 182-191 (433)
374 3vkj_A Isopentenyl-diphosphate 27.3 3.7E+02 0.013 24.8 10.5 29 157-185 267-295 (368)
375 3e8x_A Putative NAD-dependent 27.2 44 0.0015 27.5 3.3 37 25-61 17-53 (236)
376 4dmg_A Putative uncharacterize 27.2 1.3E+02 0.0043 28.1 6.8 50 30-92 237-288 (393)
377 2hsj_A Putative platelet activ 27.1 60 0.002 25.8 4.0 58 27-92 32-93 (214)
378 3r3h_A O-methyltransferase, SA 27.0 66 0.0022 27.3 4.5 70 29-107 85-157 (242)
379 1lnq_A MTHK channels, potassiu 26.9 2.9E+02 0.0098 24.2 8.9 37 29-67 115-151 (336)
380 1mjf_A Spermidine synthase; sp 26.9 3.1E+02 0.01 23.7 9.0 66 29-108 98-181 (281)
381 2c5a_A GDP-mannose-3', 5'-epim 26.5 35 0.0012 30.5 2.7 58 1-60 3-60 (379)
382 1h7n_A 5-aminolaevulinic acid 26.4 95 0.0032 29.3 5.6 66 61-182 241-306 (342)
383 1kjq_A GART 2, phosphoribosylg 26.1 1.2E+02 0.0043 26.9 6.3 33 28-61 10-42 (391)
384 3b0p_A TRNA-dihydrouridine syn 26.1 3.7E+02 0.013 24.4 9.7 28 157-185 197-224 (350)
385 1l3i_A Precorrin-6Y methyltran 25.7 2.2E+02 0.0076 21.6 7.9 64 30-108 56-122 (192)
386 1kbi_A Cytochrome B2, L-LCR; f 25.7 3.6E+02 0.012 26.1 10.0 29 157-185 403-431 (511)
387 3bt7_A TRNA (uracil-5-)-methyl 25.6 1.3E+02 0.0045 27.2 6.5 75 30-107 236-317 (369)
388 2yzr_A Pyridoxal biosynthesis 25.5 99 0.0034 28.9 5.6 30 157-186 240-271 (330)
389 1tqx_A D-ribulose-5-phosphate 25.5 3.1E+02 0.011 23.6 8.6 26 161-186 176-201 (227)
390 2f6u_A GGGPS, (S)-3-O-geranylg 25.5 1.6E+02 0.0055 25.8 6.8 55 85-186 164-218 (234)
391 1ujp_A Tryptophan synthase alp 25.4 1.9E+02 0.0064 25.6 7.3 28 157-186 202-229 (271)
392 2pjk_A 178AA long hypothetical 25.4 1.1E+02 0.0038 25.3 5.5 57 29-91 17-88 (178)
393 3v97_A Ribosomal RNA large sub 25.1 1.7E+02 0.0059 29.4 7.8 51 30-92 563-617 (703)
394 1vhc_A Putative KHG/KDPG aldol 25.0 3.3E+02 0.011 23.3 9.6 54 48-111 13-67 (224)
395 3kl4_A SRP54, signal recogniti 24.9 3.3E+02 0.011 25.9 9.3 12 81-92 176-187 (433)
396 3sg0_A Extracellular ligand-bi 24.7 1.9E+02 0.0066 24.8 7.1 54 43-109 177-237 (386)
397 3h5l_A Putative branched-chain 24.7 3.6E+02 0.012 23.7 9.7 66 31-108 166-242 (419)
398 3f4k_A Putative methyltransfer 24.6 1.2E+02 0.0042 24.8 5.6 65 31-108 71-138 (257)
399 1pv8_A Delta-aminolevulinic ac 24.6 92 0.0032 29.2 5.2 67 60-182 229-295 (330)
400 2l2q_A PTS system, cellobiose- 24.5 1.9E+02 0.0066 21.7 6.3 52 29-95 4-62 (109)
401 1r8j_A KAIA; circadian clock p 24.4 4.2E+02 0.014 24.4 10.8 74 27-111 7-80 (289)
402 3moi_A Probable dehydrogenase; 24.4 98 0.0034 28.1 5.4 36 167-202 76-113 (387)
403 1wl8_A GMP synthase [glutamine 24.3 50 0.0017 26.9 3.0 31 32-62 3-33 (189)
404 3sr7_A Isopentenyl-diphosphate 24.3 3.9E+02 0.013 24.8 9.6 30 157-186 278-307 (365)
405 1vrd_A Inosine-5'-monophosphat 24.3 1.9E+02 0.0066 27.2 7.6 69 60-185 236-305 (494)
406 1iow_A DD-ligase, DDLB, D-ALA\ 24.0 65 0.0022 27.4 3.9 53 30-93 3-63 (306)
407 2oyr_A UPF0341 protein YHIQ; a 23.9 77 0.0026 28.0 4.4 59 30-100 111-180 (258)
408 3btv_A Galactose/lactose metab 23.8 69 0.0024 29.9 4.3 45 158-202 90-144 (438)
409 4f3p_A Glutamine-binding perip 23.7 1.5E+02 0.0052 23.8 6.0 54 25-92 126-179 (249)
410 1wbh_A KHG/KDPG aldolase; lyas 23.7 3.3E+02 0.011 23.0 9.7 26 84-111 41-66 (214)
411 1izc_A Macrophomate synthase i 23.4 3.1E+02 0.01 25.2 8.6 43 158-200 96-139 (339)
412 1mkz_A Molybdenum cofactor bio 23.3 1.6E+02 0.0055 24.0 6.1 57 29-91 12-76 (172)
413 2h6r_A Triosephosphate isomera 23.2 3.4E+02 0.012 22.9 10.6 29 157-185 170-198 (219)
414 2qr6_A IMP dehydrogenase/GMP r 23.0 4.2E+02 0.014 24.1 9.5 28 157-185 211-238 (393)
415 3huu_A Transcription regulator 23.0 1.6E+02 0.0054 24.9 6.1 53 42-108 46-104 (305)
416 1vcf_A Isopentenyl-diphosphate 22.9 4E+02 0.014 23.7 10.4 29 157-185 256-284 (332)
417 1p4c_A L(+)-mandelate dehydrog 22.9 2.4E+02 0.008 26.1 7.7 89 39-185 211-306 (380)
418 2iuy_A Avigt4, glycosyltransfe 22.9 1.7E+02 0.0057 25.0 6.3 45 152-201 260-306 (342)
419 2x6q_A Trehalose-synthase TRET 22.9 3.8E+02 0.013 23.4 11.3 45 152-202 334-378 (416)
420 1vc4_A Indole-3-glycerol phosp 22.7 1.4E+02 0.0048 26.1 5.9 28 157-185 208-235 (254)
421 3del_B Arginine binding protei 22.7 1.3E+02 0.0045 23.8 5.3 53 25-92 114-166 (242)
422 1dxe_A 2-dehydro-3-deoxy-galac 22.4 3.8E+02 0.013 23.1 12.4 44 157-200 69-113 (256)
423 3w01_A Heptaprenylglyceryl pho 22.3 66 0.0023 28.5 3.6 59 63-185 26-86 (235)
424 2d00_A V-type ATP synthase sub 22.3 1.3E+02 0.0044 23.3 4.9 68 27-107 1-68 (109)
425 1v4v_A UDP-N-acetylglucosamine 22.1 3.8E+02 0.013 23.0 11.3 45 152-201 288-332 (376)
426 3iwp_A Copper homeostasis prot 22.0 2.4E+02 0.0082 25.8 7.4 43 157-199 89-150 (287)
427 1zgh_A Methionyl-tRNA formyltr 21.8 44 0.0015 30.0 2.4 58 24-92 25-85 (260)
428 2p9j_A Hypothetical protein AQ 21.7 2.6E+02 0.009 21.1 7.6 31 157-187 52-82 (162)
429 3tb6_A Arabinose metabolism tr 21.6 2.7E+02 0.0093 22.8 7.3 57 41-108 33-97 (298)
430 1y5e_A Molybdenum cofactor bio 21.6 1.8E+02 0.0061 23.6 6.0 46 40-91 31-79 (169)
431 1i4n_A Indole-3-glycerol phosp 21.6 4.2E+02 0.014 23.3 10.9 85 43-186 140-230 (251)
432 3hcw_A Maltose operon transcri 21.6 2.2E+02 0.0076 23.8 6.8 58 37-108 23-89 (295)
433 3qk7_A Transcriptional regulat 21.5 1.9E+02 0.0065 24.2 6.3 58 37-108 21-86 (294)
434 2dri_A D-ribose-binding protei 21.4 3.4E+02 0.012 22.2 8.5 54 42-108 20-80 (271)
435 3evz_A Methyltransferase; NYSG 21.4 56 0.0019 26.6 2.8 51 30-92 80-131 (230)
436 2is8_A Molybdopterin biosynthe 21.4 55 0.0019 26.6 2.7 46 40-91 21-69 (164)
437 3lft_A Uncharacterized protein 21.3 3.6E+02 0.012 22.5 9.0 39 42-91 20-69 (295)
438 2b7n_A Probable nicotinate-nuc 21.3 2.1E+02 0.0071 25.4 6.7 43 158-202 183-225 (273)
439 3evf_A RNA-directed RNA polyme 21.2 1E+02 0.0034 28.1 4.7 38 169-206 166-205 (277)
440 3pam_A Transmembrane protein; 21.1 3.2E+02 0.011 22.7 7.6 56 28-94 127-186 (259)
441 3kjx_A Transcriptional regulat 21.1 2.6E+02 0.009 24.0 7.3 54 41-108 86-145 (344)
442 1o2d_A Alcohol dehydrogenase, 21.1 1.4E+02 0.0048 27.3 5.8 66 30-109 41-120 (371)
443 3bbl_A Regulatory protein of L 21.0 3.1E+02 0.011 22.7 7.5 54 41-108 26-85 (287)
444 3o6p_A Peptide ABC transporter 20.9 1.6E+02 0.0056 24.0 5.7 60 29-100 100-165 (229)
445 3ll7_A Putative methyltransfer 20.8 74 0.0025 30.3 3.8 53 29-92 115-171 (410)
446 4htf_A S-adenosylmethionine-de 20.6 2.2E+02 0.0077 23.8 6.6 68 29-108 90-161 (285)
447 3kke_A LACI family transcripti 20.4 1.9E+02 0.0063 24.4 6.0 40 41-91 33-78 (303)
448 3ioy_A Short-chain dehydrogena 20.1 3.5E+02 0.012 23.6 8.0 36 26-61 5-40 (319)
449 3tqv_A Nicotinate-nucleotide p 20.1 2.3E+02 0.008 25.8 6.9 26 159-184 243-268 (287)
450 1p9l_A Dihydrodipicolinate red 20.1 2E+02 0.0069 25.1 6.3 65 30-107 1-66 (245)
451 1nvm_A HOA, 4-hydroxy-2-oxoval 20.1 1.8E+02 0.0062 26.4 6.2 29 157-185 82-112 (345)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.95 E-value=3.4e-27 Score=194.64 Aligned_cols=120 Identities=30% Similarity=0.526 Sum_probs=108.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCE-EEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCK-VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~-v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
+.+|||||||++.+|+.++.+|+..||+ +..|.||.+|++.+ +...||+||+|++||+|||+|++++|
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~-----------~~~~~DlillD~~MP~mdG~el~~~i 79 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPML-----------KKGDFDFVVTDWNMPGMQGIDLLKNI 79 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHH-----------HHHCCSEEEEESCCSSSCHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHH-----------HhCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 4689999999999999999999999996 66799999999999 56689999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
|... ..+++|||++|++...+...+|+++||+|||.|
T Consensus 80 r~~~-------------------------------------------~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~K 116 (134)
T 3to5_A 80 RADE-------------------------------------------ELKHLPVLMITAEAKREQIIEAAQAGVNGYIVK 116 (134)
T ss_dssp HHST-------------------------------------------TTTTCCEEEEESSCCHHHHHHHHHTTCCEEEES
T ss_pred HhCC-------------------------------------------CCCCCeEEEEECCCCHHHHHHHHHCCCCEEEEC
Confidence 9632 234799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 023816 187 PVKLSDVKRIKDYLT 201 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~ 201 (276)
|++.++|...+..+.
T Consensus 117 P~~~~~L~~~i~~~l 131 (134)
T 3to5_A 117 PFTAATLKEKLDKIF 131 (134)
T ss_dssp SCCHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999977766554
No 2
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.90 E-value=8.4e-23 Score=158.60 Aligned_cols=118 Identities=30% Similarity=0.392 Sum_probs=107.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
.+||||||++..++.++.+|+..||++..+.++++|++.+ ....||+||+|+.||+++|++++++||+.
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l-----------~~~~~dlvllD~~~p~~~g~~~~~~l~~~ 71 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKL-----------SEFTPDLIVLXIMMPVMDGFTVLKKLQEK 71 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------TTBCCSEEEECSCCSSSCHHHHHHHHHTS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHH-----------HhcCCCEEEEeccCCCCcHHHHHHHHHhc
Confidence 4899999999999999999999999999999999999999 67789999999999999999999999963
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
.. .+.+|||++|+........++++.|+++|+.||++
T Consensus 72 ~~-------------------------------------------~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~ 108 (122)
T 3gl9_A 72 EE-------------------------------------------WKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFS 108 (122)
T ss_dssp TT-------------------------------------------TTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCC
T ss_pred cc-------------------------------------------ccCCCEEEEecCCchHHHHHHHhcChhhhccCCCC
Confidence 21 23789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 023816 190 LSDVKRIKDYLT 201 (276)
Q Consensus 190 ~~~L~~~~~~l~ 201 (276)
.++|...+..+.
T Consensus 109 ~~~L~~~i~~~l 120 (122)
T 3gl9_A 109 PSQFIEEVKHLL 120 (122)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999976666543
No 3
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.90 E-value=5.5e-23 Score=162.40 Aligned_cols=122 Identities=23% Similarity=0.379 Sum_probs=109.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
|.+.+||||||++..++.++.+|+..||+|..+.++++|++.+ ....||+||+|+.||+++|++++++|
T Consensus 2 m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~dlvl~D~~lp~~~g~~~~~~l 70 (136)
T 3t6k_A 2 MKPHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQI-----------YKNLPDALICDVLLPGIDGYTLCKRV 70 (136)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HHSCCSEEEEESCCSSSCHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------HhCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 4568999999999999999999999999999999999999998 56689999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
|+.. ....+|||++|+..+.....++++.|+++||.|
T Consensus 71 r~~~-------------------------------------------~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~K 107 (136)
T 3t6k_A 71 RQHP-------------------------------------------LTKTLPILMLTAQGDISAKIAGFEAGANDYLAK 107 (136)
T ss_dssp HHSG-------------------------------------------GGTTCCEEEEECTTCHHHHHHHHHHTCSEEEET
T ss_pred HcCC-------------------------------------------CcCCccEEEEecCCCHHHHHHHHhcCcceEEeC
Confidence 9631 123789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 023816 187 PVKLSDVKRIKDYLTR 202 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~~ 202 (276)
|++.++|...+..+.+
T Consensus 108 P~~~~~L~~~i~~~l~ 123 (136)
T 3t6k_A 108 PFEPQELVYRVKNILA 123 (136)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999777766554
No 4
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.90 E-value=3.1e-23 Score=172.77 Aligned_cols=122 Identities=17% Similarity=0.307 Sum_probs=109.4
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHH
Q 023816 24 PSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELL 103 (276)
Q Consensus 24 ~~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell 103 (276)
+..+.+.+||||||++..+..++.+|+..||.|..+.++.+|++.+ ....||+||+|+.||+++|++++
T Consensus 2 ~~~m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~dlvl~D~~lp~~~g~~~~ 70 (184)
T 3rqi_A 2 PGSMSDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLA-----------GAEKFEFITVXLHLGNDSGLSLI 70 (184)
T ss_dssp -----CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHH-----------TTSCCSEEEECSEETTEESHHHH
T ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------hhCCCCEEEEeccCCCccHHHHH
Confidence 3456788999999999999999999999999999999999999999 67789999999999999999999
Q ss_pred HHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeE
Q 023816 104 KKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDF 183 (276)
Q Consensus 104 ~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~ 183 (276)
++||+..| .+|||++|++.+.+...+|++.||++|
T Consensus 71 ~~l~~~~~---------------------------------------------~~~ii~lt~~~~~~~~~~a~~~Ga~~~ 105 (184)
T 3rqi_A 71 APLCDLQP---------------------------------------------DARILVLTGYASIATAVQAVKDGADNY 105 (184)
T ss_dssp HHHHHHCT---------------------------------------------TCEEEEEESSCCHHHHHHHHHHTCSEE
T ss_pred HHHHhcCC---------------------------------------------CCCEEEEeCCCCHHHHHHHHHhCHHHh
Confidence 99998776 799999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHH
Q 023816 184 IVKPVKLSDVKRIKDYLT 201 (276)
Q Consensus 184 l~KPv~~~~L~~~~~~l~ 201 (276)
|.||++.++|...+..+.
T Consensus 106 l~KP~~~~~L~~~i~~~~ 123 (184)
T 3rqi_A 106 LAKPANVESILAALQTNA 123 (184)
T ss_dssp EESSCCHHHHHHHTSTTH
T ss_pred eeCCCCHHHHHHHHHHHH
Confidence 999999999966655443
No 5
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.89 E-value=1.6e-22 Score=159.26 Aligned_cols=122 Identities=26% Similarity=0.429 Sum_probs=105.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCE-EEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCK-VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~-v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
.++||||||++..+..++.+|+..|+. +..+.++.+|++.+..... ....||+||+|+.||+++|++++++||
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~------~~~~~dlvllD~~mp~~~G~~~~~~lr 75 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTS------KGENYNMIFMDVQMPKVDGLLSTKMIR 75 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHH------HTCCCSEEEECSCCSSSCHHHHHHHHH
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHh------cCCCCCEEEEeCCCCCCChHHHHHHHH
Confidence 478999999999999999999999974 8889999999998832100 115799999999999999999999999
Q ss_pred hh-CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 108 VT-TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 108 ~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
+. .+ .+|||++|++.......++++.|+++||.|
T Consensus 76 ~~~~~---------------------------------------------~~~ii~lt~~~~~~~~~~~~~~ga~~~l~K 110 (133)
T 2r25_B 76 RDLGY---------------------------------------------TSPIVALTAFADDSNIKECLESGMNGFLSK 110 (133)
T ss_dssp HHSCC---------------------------------------------CSCEEEEESCCSHHHHHHHHHTTCSEEEES
T ss_pred hhcCC---------------------------------------------CCCEEEEECCCCHHHHHHHHHcCCCEEEeC
Confidence 63 33 689999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 023816 187 PVKLSDVKRIKDYLT 201 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~ 201 (276)
|++.++|.+.+..+.
T Consensus 111 P~~~~~L~~~l~~~~ 125 (133)
T 2r25_B 111 PIKRPKLKTILTEFC 125 (133)
T ss_dssp SCCHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999987776654
No 6
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.89 E-value=3e-22 Score=154.68 Aligned_cols=115 Identities=22% Similarity=0.375 Sum_probs=105.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
.+||||||++..++.++..|+..||++..+.++++|++.+ ....||+||+|+.||+++|++++++||+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~dlii~D~~~p~~~g~~~~~~lr~~ 71 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMV-----------EELQPDLILLDIMLPNKDGVEVCREVRKK 71 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HTTCCSEEEEETTSTTTHHHHHHHHHHTT
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHH-----------hhCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 5899999999999999999999999999999999999998 56789999999999999999999999952
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
. ++|||++|+........++++.|+++||.||++
T Consensus 72 -~---------------------------------------------~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~ 105 (120)
T 3f6p_A 72 -Y---------------------------------------------DMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFS 105 (120)
T ss_dssp -C---------------------------------------------CSCEEEEEESSCHHHHHHHHHTTCCEEEEESCC
T ss_pred -C---------------------------------------------CCCEEEEECCCChHHHHHHHhCCcceeEcCCCC
Confidence 2 589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 023816 190 LSDVKRIKDYLT 201 (276)
Q Consensus 190 ~~~L~~~~~~l~ 201 (276)
.++|...+..+.
T Consensus 106 ~~~l~~~i~~~l 117 (120)
T 3f6p_A 106 TRELLARVKANL 117 (120)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999976665544
No 7
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.89 E-value=8.4e-22 Score=152.19 Aligned_cols=119 Identities=25% Similarity=0.377 Sum_probs=109.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
...+||||||++..++.++..|+..||.+..+.++.++++.+ ....||+||+|+.||+++|++++++|+
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvi~D~~l~~~~g~~~~~~l~ 70 (126)
T 1dbw_A 2 QDYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFA-----------PDVRNGVLVTDLRMPDMSGVELLRNLG 70 (126)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHG-----------GGCCSEEEEEECCSTTSCHHHHHHHHH
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHH-----------hcCCCCEEEEECCCCCCCHHHHHHHHH
Confidence 357999999999999999999999999999999999999988 556799999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
+..| .+|||++|+........++++.|+++||.||
T Consensus 71 ~~~~---------------------------------------------~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp 105 (126)
T 1dbw_A 71 DLKI---------------------------------------------NIPSIVITGHGDVPMAVEAMKAGAVDFIEKP 105 (126)
T ss_dssp HTTC---------------------------------------------CCCEEEEECTTCHHHHHHHHHTTCSEEEESS
T ss_pred hcCC---------------------------------------------CCCEEEEECCCCHHHHHHHHHhCHHHheeCC
Confidence 8666 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 023816 188 VKLSDVKRIKDYLTR 202 (276)
Q Consensus 188 v~~~~L~~~~~~l~~ 202 (276)
++.++|...+..+.+
T Consensus 106 ~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 106 FEDTVIIEAIERASE 120 (126)
T ss_dssp CCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999777766543
No 8
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.89 E-value=8.4e-25 Score=178.57 Aligned_cols=112 Identities=17% Similarity=0.204 Sum_probs=99.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
.++|||||||++.+++.++.+|+..||+|+ .|.||++|++.+ ++..||+||+|++||+|||++++++|
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~-----------~~~~~DlvllDi~mP~~~G~el~~~l 75 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIA-----------RKGQFDIAIIDVNLDGEPSYPVADIL 75 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHH-----------HHCCSSEEEECSSSSSCCSHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HhCCCCEEEEecCCCCCCHHHHHHHH
Confidence 468999999999999999999999999986 699999999999 56789999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
|+ + ++|||++|++.+... +.++|+.+||.|
T Consensus 76 r~--~---------------------------------------------~ipvI~lTa~~~~~~---~~~~g~~~yl~K 105 (123)
T 2lpm_A 76 AE--R---------------------------------------------NVPFIFATGYGSKGL---DTRYSNIPLLTK 105 (123)
T ss_dssp HH--T---------------------------------------------CCSSCCBCTTCTTSC---CSSSCSCSCBCS
T ss_pred Hc--C---------------------------------------------CCCEEEEecCccHHH---HHhCCCCcEEEC
Confidence 96 1 589999999876543 457899999999
Q ss_pred CCCHHHHHHHHHHH
Q 023816 187 PVKLSDVKRIKDYL 200 (276)
Q Consensus 187 Pv~~~~L~~~~~~l 200 (276)
|++.++|.+.+.++
T Consensus 106 P~~~~~L~~~l~~~ 119 (123)
T 2lpm_A 106 PFLDSELEAVLVQI 119 (123)
T ss_dssp SSSHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHH
Confidence 99999997766544
No 9
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.88 E-value=4.1e-22 Score=159.03 Aligned_cols=123 Identities=31% Similarity=0.518 Sum_probs=105.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
...++||||||++..+..++.+|+..||.+..+.++++|++.+ ....||+||+|+.||+++|++++++|
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~dlvl~D~~mp~~~g~~~~~~l 80 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAM-----------AEEDYDAVIVDLHMPGMNGLDMLKQL 80 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHH-----------HHSCCSEEEEESCCSSSCHHHHHHHH
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 4568999999999999999999999999999999999999998 55689999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
|+..+ ...+.+|||++|+....+...++++.|+++||.|
T Consensus 81 r~~~~-----------------------------------------~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~K 119 (143)
T 3m6m_D 81 RVMQA-----------------------------------------SGMRYTPVVVLSADVTPEAIRACEQAGARAFLAK 119 (143)
T ss_dssp HHHHH-----------------------------------------TTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEES
T ss_pred Hhchh-----------------------------------------ccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeC
Confidence 95321 1223689999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 023816 187 PVKLSDVKRIKDYLT 201 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~ 201 (276)
|++.++|...+..+.
T Consensus 120 P~~~~~L~~~l~~~~ 134 (143)
T 3m6m_D 120 PVVAAKLLDTLADLA 134 (143)
T ss_dssp SCCHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999977776653
No 10
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.88 E-value=8.8e-22 Score=153.99 Aligned_cols=118 Identities=21% Similarity=0.283 Sum_probs=108.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
..+||||||++..++.++.+|+..||.+..+.++.+|++.+ ....||+||+|+.||+++|++++++|++
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~dlvl~D~~l~~~~g~~~~~~l~~ 71 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKI-----------ENEFFNLALFXIKLPDMEGTELLEKAHK 71 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HHSCCSEEEECSBCSSSBHHHHHHHHHH
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHH-----------hcCCCCEEEEecCCCCCchHHHHHHHHh
Confidence 57899999999999999999999999999999999999998 4567999999999999999999999998
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
..+ .+|||++|+........++++.|+++||.||+
T Consensus 72 ~~~---------------------------------------------~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~ 106 (132)
T 3crn_A 72 LRP---------------------------------------------GMKKIMVTGYASLENSVFSLNAGADAYIMKPV 106 (132)
T ss_dssp HCT---------------------------------------------TSEEEEEESCCCHHHHHHHHHTTCSEEEESSC
T ss_pred hCC---------------------------------------------CCcEEEEeccccHHHHHHHHhccchhhccCCC
Confidence 666 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 023816 189 KLSDVKRIKDYLTR 202 (276)
Q Consensus 189 ~~~~L~~~~~~l~~ 202 (276)
+.++|...++.+.+
T Consensus 107 ~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 107 NPRDLLEKIKEKLD 120 (132)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999777666543
No 11
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.88 E-value=1.6e-21 Score=153.27 Aligned_cols=125 Identities=25% Similarity=0.395 Sum_probs=112.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
|.+++||||||++..++.++.+|+..|+.+..+.++.+|++.+.. ....||+||+|+.||+++|++++++|
T Consensus 1 M~~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~---------~~~~~dlvi~d~~l~~~~g~~~~~~l 71 (143)
T 3jte_A 1 MSLAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTE---------NCNSIDVVITDMKMPKLSGMDILREI 71 (143)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH---------TTTTCCEEEEESCCSSSCHHHHHHHH
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHh---------CCCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 346899999999999999999999999999999999999999821 15689999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
|+..| .+|||++|+........++++.|+++||.|
T Consensus 72 ~~~~~---------------------------------------------~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k 106 (143)
T 3jte_A 72 KKITP---------------------------------------------HMAVIILTGHGDLDNAILAMKEGAFEYLRK 106 (143)
T ss_dssp HHHCT---------------------------------------------TCEEEEEECTTCHHHHHHHHHTTCSEEEES
T ss_pred HHhCC---------------------------------------------CCeEEEEECCCCHHHHHHHHHhCcceeEeC
Confidence 98776 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhh
Q 023816 187 PVKLSDVKRIKDYLTRDVN 205 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~~~~~ 205 (276)
|++.++|...+..+.+...
T Consensus 107 p~~~~~l~~~l~~~~~~~~ 125 (143)
T 3jte_A 107 PVTAQDLSIAINNAINRKK 125 (143)
T ss_dssp SCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 9999999877777665443
No 12
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.88 E-value=1.7e-21 Score=148.28 Aligned_cols=117 Identities=21% Similarity=0.400 Sum_probs=107.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
++||||||++..+..++..|+..|+.+..+.++.+|++.+ ....||+||+|+.||+++|+++++++++.
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~-----------~~~~~dlil~D~~l~~~~g~~~~~~l~~~ 69 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYL-----------NEHIPDIAIVDLGLPDEDGLSLIRRWRSN 69 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HHSCCSEEEECSCCSSSCHHHHHHHHHHT
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHH-----------hccCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999998 45679999999999999999999999976
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
.+ .+|+|++|+........++++.|+++|+.||++
T Consensus 70 ~~---------------------------------------------~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~ 104 (121)
T 2pl1_A 70 DV---------------------------------------------SLPILVLTARESWQDKVEVLSAGADDYVTKPFH 104 (121)
T ss_dssp TC---------------------------------------------CSCEEEEESCCCHHHHHHHHHTTCSEEEESSCC
T ss_pred CC---------------------------------------------CCCEEEEecCCCHHHHHHHHHcCccceEECCCC
Confidence 55 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023816 190 LSDVKRIKDYLTR 202 (276)
Q Consensus 190 ~~~L~~~~~~l~~ 202 (276)
.++|...+..+.+
T Consensus 105 ~~~l~~~i~~~~~ 117 (121)
T 2pl1_A 105 IEEVMARMQALMR 117 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999777666543
No 13
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.88 E-value=2e-21 Score=155.24 Aligned_cols=131 Identities=23% Similarity=0.375 Sum_probs=108.7
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHH
Q 023816 25 SDTEEVHVLAVDDSFVDRKVIERLLTISSC--KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYEL 102 (276)
Q Consensus 25 ~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~--~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~el 102 (276)
.....++||||||++..++.++.+|+..|+ .+..+.++.+|++.+....+.. ....||+||+|+.||+++|+++
T Consensus 4 ~~~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~----~~~~~dlillD~~lp~~~g~~l 79 (149)
T 1i3c_A 4 ESNPPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYE----NSPRPNLILLDLNLPKKDGREV 79 (149)
T ss_dssp --CCCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGT----TCCCCSEEEECSCCSSSCHHHH
T ss_pred ccCCCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccc----cCCCCCEEEEeCCCCCCcHHHH
Confidence 344578999999999999999999998887 8889999999999983210000 0247999999999999999999
Q ss_pred HHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCe
Q 023816 103 LKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAED 182 (276)
Q Consensus 103 l~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d 182 (276)
+++||+.. ....+|||++|+........++++.||++
T Consensus 80 ~~~l~~~~-------------------------------------------~~~~~piiils~~~~~~~~~~~~~~ga~~ 116 (149)
T 1i3c_A 80 LAEIKQNP-------------------------------------------DLKRIPVVVLTTSHNEDDVIASYELHVNC 116 (149)
T ss_dssp HHHHHHCT-------------------------------------------TTTTSCEEEEESCCCHHHHHHHHHTTCSE
T ss_pred HHHHHhCc-------------------------------------------CcCCCeEEEEECCCChHHHHHHHHcCCcE
Confidence 99999732 12278999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHHH
Q 023816 183 FIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 183 ~l~KPv~~~~L~~~~~~l~~ 202 (276)
||.||++.++|...++.+.+
T Consensus 117 ~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 117 YLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp EEECCSSHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHHH
Confidence 99999999999777776654
No 14
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.88 E-value=6.9e-22 Score=154.04 Aligned_cols=122 Identities=28% Similarity=0.485 Sum_probs=105.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCE-EEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCK-VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~-v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
...++||||||++..++.++.+|+..||. +..+.++.+|++.+. ....||+||+|+.||+++|++++++
T Consensus 3 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~----------~~~~~dlvi~D~~~p~~~g~~~~~~ 72 (129)
T 3h1g_A 3 LGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLD----------ANADTKVLITDWNMPEMNGLDLVKK 72 (129)
T ss_dssp ---CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH----------HCTTCCEEEECSCCSSSCHHHHHHH
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHH----------hCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 34679999999999999999999999995 888999999999872 2346999999999999999999999
Q ss_pred HHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 106 IKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 106 Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
||+.. ....+|||++|++.......++++.|+++||.
T Consensus 73 lr~~~-------------------------------------------~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~ 109 (129)
T 3h1g_A 73 VRSDS-------------------------------------------RFKEIPIIMITAEGGKAEVITALKAGVNNYIV 109 (129)
T ss_dssp HHTST-------------------------------------------TCTTCCEEEEESCCSHHHHHHHHHHTCCEEEE
T ss_pred HHhcC-------------------------------------------CCCCCeEEEEeCCCChHHHHHHHHcCccEEEe
Confidence 99632 12378999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 023816 186 KPVKLSDVKRIKDYLT 201 (276)
Q Consensus 186 KPv~~~~L~~~~~~l~ 201 (276)
||++.++|.+.++.+.
T Consensus 110 KP~~~~~L~~~l~~~l 125 (129)
T 3h1g_A 110 KPFTPQVLKEKLEVVL 125 (129)
T ss_dssp SCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999977776654
No 15
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.88 E-value=1.7e-21 Score=155.93 Aligned_cols=122 Identities=22% Similarity=0.320 Sum_probs=112.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
..+.+||||||++..+..++.+|+..||.|..+.++.+|++.+ ....||+||+|+.||+++|++++++|
T Consensus 12 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlvi~D~~l~~~~g~~~~~~l 80 (153)
T 3hv2_A 12 TRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLL-----------ASREVDLVISAAHLPQMDGPTLLARI 80 (153)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHH-----------HHSCCSEEEEESCCSSSCHHHHHHHH
T ss_pred cCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHH-----------HcCCCCEEEEeCCCCcCcHHHHHHHH
Confidence 3468999999999999999999999999999999999999999 55689999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcC-CCeEEe
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDG-AEDFIV 185 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~G-a~d~l~ 185 (276)
|+..+ .+|||++|+........++++.| +++||.
T Consensus 81 ~~~~~---------------------------------------------~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~ 115 (153)
T 3hv2_A 81 HQQYP---------------------------------------------STTRILLTGDPDLKLIAKAINEGEIYRYLS 115 (153)
T ss_dssp HHHCT---------------------------------------------TSEEEEECCCCCHHHHHHHHHTTCCSEEEC
T ss_pred HhHCC---------------------------------------------CCeEEEEECCCCHHHHHHHHhCCCcceEEe
Confidence 98777 79999999999999999999999 999999
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q 023816 186 KPVKLSDVKRIKDYLTRDV 204 (276)
Q Consensus 186 KPv~~~~L~~~~~~l~~~~ 204 (276)
||++.++|...+..+.+..
T Consensus 116 KP~~~~~l~~~i~~~l~~~ 134 (153)
T 3hv2_A 116 KPWDDQELLLALRQALEHQ 134 (153)
T ss_dssp SSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999987777766543
No 16
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.88 E-value=8e-22 Score=154.95 Aligned_cols=121 Identities=17% Similarity=0.196 Sum_probs=110.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC--CCHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG--MTGYELLKK 105 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~--~~G~ell~~ 105 (276)
...+||||||++..++.++.+|+..||++..+.++++|++.+ +...||+||+|+.||+ ++|++++++
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlvi~D~~l~~~~~~g~~~~~~ 73 (136)
T 3kto_A 5 HHPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQ-----------ISDDAIGMIIEAHLEDKKDSGIELLET 73 (136)
T ss_dssp --CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSC-----------CCTTEEEEEEETTGGGBTTHHHHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHH-----------hccCCCEEEEeCcCCCCCccHHHHHHH
Confidence 467999999999999999999999999999999999999988 6778999999999999 999999999
Q ss_pred HHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 106 IKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 106 Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
||+..+ .+|||++|+........++++.|+++||.
T Consensus 74 l~~~~~---------------------------------------------~~~ii~~s~~~~~~~~~~~~~~ga~~~l~ 108 (136)
T 3kto_A 74 LVKRGF---------------------------------------------HLPTIVMASSSDIPTAVRAMRASAADFIE 108 (136)
T ss_dssp HHHTTC---------------------------------------------CCCEEEEESSCCHHHHHHHHHTTCSEEEE
T ss_pred HHhCCC---------------------------------------------CCCEEEEEcCCCHHHHHHHHHcChHHhee
Confidence 998666 89999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q 023816 186 KPVKLSDVKRIKDYLTRDV 204 (276)
Q Consensus 186 KPv~~~~L~~~~~~l~~~~ 204 (276)
||++.++|...+..+....
T Consensus 109 KP~~~~~l~~~i~~~~~~~ 127 (136)
T 3kto_A 109 KPFIEHVLVHDVQQIINGA 127 (136)
T ss_dssp SSBCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 9999999987777766543
No 17
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.88 E-value=1.6e-21 Score=150.97 Aligned_cols=121 Identities=28% Similarity=0.459 Sum_probs=104.9
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 26 ~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
.+.+.+||||||++..+..++++|+..|+.+..+.++.+|++.+ +...||+||+|+.||+++|++++++
T Consensus 4 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlvi~d~~l~~~~g~~~~~~ 72 (130)
T 3eod_A 4 PLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELL-----------GGFTPDLMICDIAMPRMNGLKLLEH 72 (130)
T ss_dssp TTTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHH-----------TTCCCSEEEECCC-----CHHHHHH
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHH-----------hcCCCCEEEEecCCCCCCHHHHHHH
Confidence 35578999999999999999999999999999999999999999 6778999999999999999999999
Q ss_pred HHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 106 IKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 106 Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
||+..+ .+|||++|+........++++.|+++|+.
T Consensus 73 l~~~~~---------------------------------------------~~~ii~~t~~~~~~~~~~~~~~g~~~~l~ 107 (130)
T 3eod_A 73 IRNRGD---------------------------------------------QTPVLVISATENMADIAKALRLGVEDVLL 107 (130)
T ss_dssp HHHTTC---------------------------------------------CCCEEEEECCCCHHHHHHHHHHCCSEEEE
T ss_pred HHhcCC---------------------------------------------CCCEEEEEcCCCHHHHHHHHHcCCCEEEe
Confidence 998666 79999999999999999999999999999
Q ss_pred CCC-CHHHHHHHHHHHHH
Q 023816 186 KPV-KLSDVKRIKDYLTR 202 (276)
Q Consensus 186 KPv-~~~~L~~~~~~l~~ 202 (276)
||+ +.++|.+.+..+..
T Consensus 108 KP~~~~~~l~~~i~~~l~ 125 (130)
T 3eod_A 108 KPVKDLNRLREMVFACLY 125 (130)
T ss_dssp SCC---CHHHHHHHHHHC
T ss_pred CCCCcHHHHHHHHHHHhc
Confidence 999 88898777776654
No 18
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.88 E-value=1.6e-21 Score=149.83 Aligned_cols=116 Identities=27% Similarity=0.421 Sum_probs=106.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
..+||||||++..++.++..|+..||.+..+.++.+|++.+ ....||+||+|+.||+++|++++++|++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~-----------~~~~~dlvl~D~~l~~~~g~~~~~~l~~ 71 (124)
T 1srr_A 3 NEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIV-----------TKERPDLVLLDMKIPGMDGIEILKRMKV 71 (124)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHH-----------HHHCCSEEEEESCCTTCCHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHH-----------hccCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 36899999999999999999999999999999999999998 4557999999999999999999999998
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
..| .+|||++|+........++++.|+++||.||+
T Consensus 72 ~~~---------------------------------------------~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~ 106 (124)
T 1srr_A 72 IDE---------------------------------------------NIRVIIMTAYGELDMIQESKELGALTHFAKPF 106 (124)
T ss_dssp HCT---------------------------------------------TCEEEEEESSCCHHHHHHHHHHTCCCEEESSC
T ss_pred hCC---------------------------------------------CCCEEEEEccCchHHHHHHHhcChHhhccCCC
Confidence 766 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHH
Q 023816 189 KLSDVKRIKDYL 200 (276)
Q Consensus 189 ~~~~L~~~~~~l 200 (276)
+.++|...+..+
T Consensus 107 ~~~~l~~~i~~~ 118 (124)
T 1srr_A 107 DIDEIRDAVKKY 118 (124)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999997766554
No 19
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.88 E-value=3.7e-21 Score=154.86 Aligned_cols=122 Identities=33% Similarity=0.466 Sum_probs=110.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
.+.+||||||++..+..++.+|+..||.|..+.++.+|++.+ ....||+||+|+.||+++|+++++.||
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l-----------~~~~~dlii~D~~l~~~~g~~~~~~lr 74 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFL-----------SLTRPDLIISDVLMPEMDGYALCRWLK 74 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHH-----------TTCCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------HhCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 468999999999999999999999999999999999999999 677899999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
+.. ....+|||++|+....+...++++.|+++||.||
T Consensus 75 ~~~-------------------------------------------~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP 111 (154)
T 3gt7_A 75 GQP-------------------------------------------DLRTIPVILLTILSDPRDVVRSLECGADDFITKP 111 (154)
T ss_dssp HST-------------------------------------------TTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESS
T ss_pred hCC-------------------------------------------CcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCC
Confidence 742 1237999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 023816 188 VKLSDVKRIKDYLTRD 203 (276)
Q Consensus 188 v~~~~L~~~~~~l~~~ 203 (276)
++.++|...+..+.+.
T Consensus 112 ~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 112 CKDVVLASHVKRLLSG 127 (154)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999998777776654
No 20
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.87 E-value=4.9e-21 Score=147.50 Aligned_cols=121 Identities=27% Similarity=0.440 Sum_probs=107.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCC-EEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSC-KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~-~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
+.++||||||++..++.++.+|+..|+ .+..+.++.+|++.+ ....||+||+|+.||+++|++++++|
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~-----------~~~~~dlvi~D~~l~~~~g~~l~~~l 71 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGGYGFVISDWNMPNMDGLELLKTI 71 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHH-----------TTCCCCEEEEESCCSSSCHHHHHHHH
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 467899999999999999999999999 788999999999998 56689999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
|+... ...+|||++|+........++++.|+++|+.|
T Consensus 72 ~~~~~-------------------------------------------~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~K 108 (128)
T 1jbe_A 72 RAXXA-------------------------------------------MSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108 (128)
T ss_dssp HC--C-------------------------------------------CTTCCEEEEESSCCHHHHHHHHHTTCSEEEES
T ss_pred Hhhcc-------------------------------------------cCCCcEEEEecCccHHHHHHHHHhCcCceeec
Confidence 96221 22689999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 023816 187 PVKLSDVKRIKDYLTR 202 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~~ 202 (276)
|++.++|...++.+.+
T Consensus 109 P~~~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 109 PFTAATLEEKLNKIFE 124 (128)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999777766554
No 21
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.87 E-value=3.8e-21 Score=153.33 Aligned_cols=130 Identities=26% Similarity=0.443 Sum_probs=111.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~--~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
+++||||||++..++.++++|+..|+ .+..+.++++|++.+..... .+......||+||+|+.||+++|++++++|
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~--~~~~~~~~~dliilD~~l~~~~g~~~~~~l 81 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDK--SGRVSAGRAQLVLLDLNLPDMTGIDILKLV 81 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTS--SSGGGTTCBEEEEECSBCSSSBHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhcccc--ccccccCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 58999999999999999999999998 89999999999999832110 000024679999999999999999999999
Q ss_pred Hh--hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 107 KV--TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 107 r~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
|+ ..+ .+|||++|+........++++.|+++||
T Consensus 82 r~~~~~~---------------------------------------------~~pii~~t~~~~~~~~~~~~~~g~~~~l 116 (152)
T 3heb_A 82 KENPHTR---------------------------------------------RSPVVILTTTDDQREIQRCYDLGANVYI 116 (152)
T ss_dssp HHSTTTT---------------------------------------------TSCEEEEESCCCHHHHHHHHHTTCSEEE
T ss_pred Hhccccc---------------------------------------------CCCEEEEecCCCHHHHHHHHHCCCcEEE
Confidence 97 333 7999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHhhh
Q 023816 185 VKPVKLSDVKRIKDYLTRDVN 205 (276)
Q Consensus 185 ~KPv~~~~L~~~~~~l~~~~~ 205 (276)
.||++.++|...++.+.+.+.
T Consensus 117 ~KP~~~~~l~~~i~~~~~~~~ 137 (152)
T 3heb_A 117 TKPVNYENFANAIRQLGLFFS 137 (152)
T ss_dssp ECCSSHHHHHHHHHHHHHHHT
T ss_pred eCCCCHHHHHHHHHHHHHHHH
Confidence 999999999888888765543
No 22
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.87 E-value=4.1e-21 Score=146.99 Aligned_cols=118 Identities=22% Similarity=0.405 Sum_probs=107.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
...+||||||++..++.++..|+..||++..+.++.+|++.+ ....||+||+|+.||+++|++++++|+
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~-----------~~~~~dlvi~D~~l~~~~g~~~~~~l~ 70 (123)
T 1xhf_A 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQIL-----------SEYDINLVIMDINLPGKNGLLLARELR 70 (123)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHH-----------HHSCCSEEEECSSCSSSCHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHH-----------hcCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 356899999999999999999999999999999999999998 456799999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
+. + .+|+|++|+........++++.|+++|+.||
T Consensus 71 ~~-~---------------------------------------------~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP 104 (123)
T 1xhf_A 71 EQ-A---------------------------------------------NVALMFLTGRDNEVDKILGLEIGADDYITKP 104 (123)
T ss_dssp HH-C---------------------------------------------CCEEEEEESCCSHHHHHHHHHHTCSEEEESS
T ss_pred hC-C---------------------------------------------CCcEEEEECCCChHHHHHHHhcCcceEEeCC
Confidence 75 4 6899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 023816 188 VKLSDVKRIKDYLTR 202 (276)
Q Consensus 188 v~~~~L~~~~~~l~~ 202 (276)
++.++|...+..+.+
T Consensus 105 ~~~~~l~~~i~~~~~ 119 (123)
T 1xhf_A 105 FNPRELTIRARNLLS 119 (123)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999776665543
No 23
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.87 E-value=2.4e-21 Score=168.54 Aligned_cols=123 Identities=25% Similarity=0.413 Sum_probs=112.2
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHH
Q 023816 25 SDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (276)
Q Consensus 25 ~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~ 104 (276)
..+++++||||||++..+..++.+|+..||+|..+.++++|++.+ ....||+||+|+.||+++|+++++
T Consensus 19 ~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~dlvllD~~lp~~~g~~~~~ 87 (250)
T 3r0j_A 19 NTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA-----------RETRPDAVILDVXMPGMDGFGVLR 87 (250)
T ss_dssp -CCSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HHHCCSEEEEESCCSSSCHHHHHH
T ss_pred CCCCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------HhCCCCEEEEeCCCCCCCHHHHHH
Confidence 345578999999999999999999999999999999999999998 556799999999999999999999
Q ss_pred HHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 105 KIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 105 ~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
+||+..+ .+|||++|+..+.....++++.||+|||
T Consensus 88 ~lr~~~~---------------------------------------------~~~ii~lt~~~~~~~~~~~~~~Ga~~yl 122 (250)
T 3r0j_A 88 RLRADGI---------------------------------------------DAPALFLTARDSLQDKIAGLTLGGDDYV 122 (250)
T ss_dssp HHHHTTC---------------------------------------------CCCEEEEECSTTHHHHHHHHTSTTCEEE
T ss_pred HHHhcCC---------------------------------------------CCCEEEEECCCCHHHHHHHHHcCCcEEE
Confidence 9998666 7999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHh
Q 023816 185 VKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 185 ~KPv~~~~L~~~~~~l~~~ 203 (276)
.||++.++|...+..+.+.
T Consensus 123 ~Kp~~~~~L~~~i~~~~~~ 141 (250)
T 3r0j_A 123 TKPFSLEEVVARLRVILRR 141 (250)
T ss_dssp ESSCCHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHh
Confidence 9999999997777766554
No 24
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.87 E-value=5.6e-21 Score=146.04 Aligned_cols=116 Identities=22% Similarity=0.353 Sum_probs=106.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
.+||||||++..+..++..|+..||.+..+.++.++++.+ ....||+||+|+.||+++|++++++||+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvi~d~~l~~~~g~~~~~~l~~- 70 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIM-----------QNQSVDLILLDINLPDENGLMLTRALRE- 70 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HHSCCSEEEEESCCSSSCHHHHHHHHHT-
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHH-----------hcCCCCEEEEeCCCCCCChHHHHHHHHh-
Confidence 5899999999999999999999999999999999999988 4567999999999999999999999996
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
.+ .+|||++|+........++++.|+++|+.||++
T Consensus 71 ~~---------------------------------------------~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~ 105 (122)
T 1zgz_A 71 RS---------------------------------------------TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLE 105 (122)
T ss_dssp TC---------------------------------------------CCEEEEEESSCCHHHHHHHHHHTCSEEEESSCC
T ss_pred cC---------------------------------------------CCCEEEEECCCChhhHHHHHHhCHHHHccCCCC
Confidence 44 689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023816 190 LSDVKRIKDYLTR 202 (276)
Q Consensus 190 ~~~L~~~~~~l~~ 202 (276)
.+++...+..+.+
T Consensus 106 ~~~l~~~i~~~~~ 118 (122)
T 1zgz_A 106 LRELVVRVKNLLW 118 (122)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999777666544
No 25
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.87 E-value=2.4e-21 Score=147.67 Aligned_cols=116 Identities=28% Similarity=0.444 Sum_probs=105.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCE-EEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCK-VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~-v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
+.+||||||++..+..++..|+..||+ +..+.++.+|++.+ ....||+||+|+.||+++|++++++|+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~-----------~~~~~dlil~D~~l~~~~g~~~~~~l~ 70 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKY-----------KELKPDIVTMDITMPEMNGIDAIKEIM 70 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-----------HHHCCSEEEEECSCGGGCHHHHHHHHH
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHH-----------HhcCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 368999999999999999999999999 55799999999998 455799999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
+..| .+|||++|+........++++.|+++|+.||
T Consensus 71 ~~~~---------------------------------------------~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP 105 (120)
T 1tmy_A 71 KIDP---------------------------------------------NAKIIVCSAMGQQAMVIEAIKAGAKDFIVKP 105 (120)
T ss_dssp HHCT---------------------------------------------TCCEEEEECTTCHHHHHHHHHTTCCEEEESS
T ss_pred hhCC---------------------------------------------CCeEEEEeCCCCHHHHHHHHHhCcceeEeCC
Confidence 8766 7899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 023816 188 VKLSDVKRIKDYL 200 (276)
Q Consensus 188 v~~~~L~~~~~~l 200 (276)
++.++|...+..+
T Consensus 106 ~~~~~l~~~i~~~ 118 (120)
T 1tmy_A 106 FQPSRVVEALNKV 118 (120)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999997666543
No 26
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.87 E-value=7.8e-22 Score=152.19 Aligned_cols=120 Identities=18% Similarity=0.228 Sum_probs=105.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
|.+.+||||||++..++.++.+|+..||++..+.++++|++.+ ....||+||+|+.||+++|++++++|
T Consensus 1 M~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlii~D~~l~~~~g~~~~~~l 69 (127)
T 3i42_A 1 MSLQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAM-----------STRGYDAVFIDLNLPDTSGLALVKQL 69 (127)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHH-----------HHSCCSEEEEESBCSSSBHHHHHHHH
T ss_pred CCcceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 3468999999999999999999999999999999999999999 55679999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
|+... ...+|||++|+...... .+++..|+++||.|
T Consensus 70 ~~~~~-------------------------------------------~~~~~ii~~s~~~~~~~-~~~~~~g~~~~l~K 105 (127)
T 3i42_A 70 RALPM-------------------------------------------EKTSKFVAVSGFAKNDL-GKEACELFDFYLEK 105 (127)
T ss_dssp HHSCC-------------------------------------------SSCCEEEEEECC-CTTC-CHHHHHHCSEEEES
T ss_pred Hhhhc-------------------------------------------cCCCCEEEEECCcchhH-HHHHHHhhHHheeC
Confidence 98511 22799999999988887 88999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 023816 187 PVKLSDVKRIKDYLT 201 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~ 201 (276)
|++.++|.+.+..+.
T Consensus 106 P~~~~~L~~~i~~~~ 120 (127)
T 3i42_A 106 PIDIASLEPILQSIE 120 (127)
T ss_dssp SCCHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999976665544
No 27
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.87 E-value=1.9e-21 Score=153.50 Aligned_cols=126 Identities=21% Similarity=0.277 Sum_probs=109.3
Q ss_pred CCCCCCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHH
Q 023816 22 LSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYE 101 (276)
Q Consensus 22 ~~~~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~e 101 (276)
|+......++||||||++..+..++..|+..||+|..+.++.+|++.+ ....||+||+|+.||+++|++
T Consensus 1 M~~~~~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlii~d~~l~~~~g~~ 69 (147)
T 2zay_A 1 MSLAEGKWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVA-----------VKTHPHLIITEANMPKISGMD 69 (147)
T ss_dssp -------CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHH-----------HHHCCSEEEEESCCSSSCHHH
T ss_pred CCcccCCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHH-----------HcCCCCEEEEcCCCCCCCHHH
Confidence 455667789999999999999999999999999999999999999998 455799999999999999999
Q ss_pred HHHHHHh--hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcC
Q 023816 102 LLKKIKV--TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDG 179 (276)
Q Consensus 102 ll~~Ir~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~G 179 (276)
++++|++ ..+ .+|||++|+........++++.|
T Consensus 70 ~~~~l~~~~~~~---------------------------------------------~~pii~ls~~~~~~~~~~~~~~g 104 (147)
T 2zay_A 70 LFNSLKKNPQTA---------------------------------------------SIPVIALSGRATAKEEAQLLDMG 104 (147)
T ss_dssp HHHHHHTSTTTT---------------------------------------------TSCEEEEESSCCHHHHHHHHHHT
T ss_pred HHHHHHcCcccC---------------------------------------------CCCEEEEeCCCCHHHHHHHHhCC
Confidence 9999997 333 79999999999999999999999
Q ss_pred CCeEEeCCCCHHHHHHHHHHHHHh
Q 023816 180 AEDFIVKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 180 a~d~l~KPv~~~~L~~~~~~l~~~ 203 (276)
+++||.||++.++|...+..+.+.
T Consensus 105 ~~~~l~kp~~~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 105 FIDFIAKPVNAIRLSARIKRVLKL 128 (147)
T ss_dssp CSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999999997777666544
No 28
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.87 E-value=1.6e-21 Score=153.10 Aligned_cols=118 Identities=19% Similarity=0.287 Sum_probs=109.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhh-CCCEEEEECCHHHHHHHhcccccccccCCCC-CceeEEEEecCCC-CCCHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTI-SSCKVTAVDSGRRALQFLGLDEEQSINGFDG-LKVDLIITDYCMP-GMTGYELLKK 105 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~-~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~-~~~DlIL~D~~mp-~~~G~ell~~ 105 (276)
+.+||||||++..+..++.+|+. .||++..+.++.+|++.+ .. ..||+||+|+.|| +++|++++++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l-----------~~~~~~dlvi~D~~l~~~~~g~~~~~~ 72 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIF-----------KDLDSITLIIMDIAFPVEKEGLEVLSA 72 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTT-----------TTCCCCSEEEECSCSSSHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHH-----------hcCCCCcEEEEeCCCCCCCcHHHHHHH
Confidence 67999999999999999999999 999999999999999998 66 7899999999999 9999999999
Q ss_pred HHh--hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeE
Q 023816 106 IKV--TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDF 183 (276)
Q Consensus 106 Ir~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~ 183 (276)
||+ ..+ .+|||++|+....+...++++.|+++|
T Consensus 73 l~~~~~~~---------------------------------------------~~~ii~ls~~~~~~~~~~~~~~g~~~~ 107 (140)
T 3lua_A 73 IRNNSRTA---------------------------------------------NTPVIIATKSDNPGYRHAALKFKVSDY 107 (140)
T ss_dssp HHHSGGGT---------------------------------------------TCCEEEEESCCCHHHHHHHHHSCCSEE
T ss_pred HHhCcccC---------------------------------------------CCCEEEEeCCCCHHHHHHHHHcCCCEE
Confidence 997 444 899999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHHH
Q 023816 184 IVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 184 l~KPv~~~~L~~~~~~l~~ 202 (276)
|.||++.++|...+..+.+
T Consensus 108 l~KP~~~~~l~~~i~~~~~ 126 (140)
T 3lua_A 108 ILKPYPTKRLENSVRSVLK 126 (140)
T ss_dssp EESSCCTTHHHHHHHHHHC
T ss_pred EECCCCHHHHHHHHHHHHH
Confidence 9999999999777776654
No 29
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.87 E-value=6.6e-21 Score=152.03 Aligned_cols=123 Identities=24% Similarity=0.385 Sum_probs=110.6
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHhhCC--CEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHH
Q 023816 25 SDTEEVHVLAVDDSFVDRKVIERLLTISS--CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYEL 102 (276)
Q Consensus 25 ~~~~~~~VLIVdD~~~~~~~L~~~L~~~g--~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~el 102 (276)
....+++||||||++..++.++.+|+..| +.+..+.++++|++.+ ....||+||+|+.||+++|+++
T Consensus 16 ~~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l-----------~~~~~dlii~D~~l~~~~g~~~ 84 (150)
T 4e7p_A 16 PRGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLL-----------EKESVDIAILDVEMPVKTGLEV 84 (150)
T ss_dssp ----CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHH-----------TTSCCSEEEECSSCSSSCHHHH
T ss_pred CCCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHh-----------hccCCCEEEEeCCCCCCcHHHH
Confidence 44557899999999999999999999887 7899999999999999 6778999999999999999999
Q ss_pred HHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCe
Q 023816 103 LKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAED 182 (276)
Q Consensus 103 l~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d 182 (276)
++.||+..+ .+|||++|+..+.+...++++.|+++
T Consensus 85 ~~~l~~~~~---------------------------------------------~~~ii~ls~~~~~~~~~~~~~~g~~~ 119 (150)
T 4e7p_A 85 LEWIRSEKL---------------------------------------------ETKVVVVTTFKRAGYFERAVKAGVDA 119 (150)
T ss_dssp HHHHHHTTC---------------------------------------------SCEEEEEESCCCHHHHHHHHHTTCSE
T ss_pred HHHHHHhCC---------------------------------------------CCeEEEEeCCCCHHHHHHHHHCCCcE
Confidence 999998666 79999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHHHh
Q 023816 183 FIVKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 183 ~l~KPv~~~~L~~~~~~l~~~ 203 (276)
||.||++.++|...+..+.+.
T Consensus 120 ~l~Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 120 YVLKERSIADLMQTLHTVLEG 140 (150)
T ss_dssp EEETTSCHHHHHHHHHHHHTT
T ss_pred EEecCCCHHHHHHHHHHHHcC
Confidence 999999999998777766643
No 30
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.87 E-value=1.5e-21 Score=153.01 Aligned_cols=121 Identities=13% Similarity=0.212 Sum_probs=108.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
+.+.+||||||++..++.++.+|+..||++..+.++++|++.+ ....||+||+|+.||+++|++++++|
T Consensus 4 ~~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlvi~d~~l~~~~g~~~~~~l 72 (140)
T 3grc_A 4 APRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQV-----------ARRPYAAMTVDLNLPDQDGVSLIRAL 72 (140)
T ss_dssp -CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHH-----------HHSCCSEEEECSCCSSSCHHHHHHHH
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHH-----------HhCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 4468999999999999999999999999999999999999999 56679999999999999999999999
Q ss_pred Hh--hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHH-HHHhcCCCeE
Q 023816 107 KV--TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARID-RCLEDGAEDF 183 (276)
Q Consensus 107 r~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~-~al~~Ga~d~ 183 (276)
|+ ..+ .+|||++|+........ ++++.|+++|
T Consensus 73 ~~~~~~~---------------------------------------------~~~ii~~s~~~~~~~~~~~~~~~g~~~~ 107 (140)
T 3grc_A 73 RRDSRTR---------------------------------------------DLAIVVVSANAREGELEFNSQPLAVSTW 107 (140)
T ss_dssp HTSGGGT---------------------------------------------TCEEEEECTTHHHHHHHHCCTTTCCCEE
T ss_pred HhCcccC---------------------------------------------CCCEEEEecCCChHHHHHHhhhcCCCEE
Confidence 97 333 79999999988877777 8999999999
Q ss_pred EeCCCCHHHHHHHHHHHHHh
Q 023816 184 IVKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 184 l~KPv~~~~L~~~~~~l~~~ 203 (276)
|.||++.++|...+..+.+.
T Consensus 108 l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 108 LEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp ECSSCCHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHh
Confidence 99999999997777666544
No 31
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.87 E-value=3e-21 Score=151.11 Aligned_cols=118 Identities=18% Similarity=0.382 Sum_probs=106.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCC--CEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISS--CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g--~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
+++||||||++..++.++.+|+..| +.+..+.++.+|++.+ +...||+||+|+.||+++|++++++|
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~-----------~~~~~dlvilD~~lp~~~g~~~~~~l 71 (133)
T 3b2n_A 3 LTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLI-----------EEYNPNVVILDIEMPGMTGLEVLAEI 71 (133)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHH-----------HHHCCSEEEECSSCSSSCHHHHHHHH
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHH-----------hhcCCCEEEEecCCCCCCHHHHHHHH
Confidence 5789999999999999999999876 5667899999999998 45579999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
|+..| .+|||++|+........++++.|+++||.|
T Consensus 72 ~~~~~---------------------------------------------~~~ii~ls~~~~~~~~~~~~~~ga~~~l~K 106 (133)
T 3b2n_A 72 RKKHL---------------------------------------------NIKVIIVTTFKRPGYFEKAVVNDVDAYVLK 106 (133)
T ss_dssp HHTTC---------------------------------------------SCEEEEEESCCCHHHHHHHHHTTCSEEEET
T ss_pred HHHCC---------------------------------------------CCcEEEEecCCCHHHHHHHHHcCCcEEEEC
Confidence 98666 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 023816 187 PVKLSDVKRIKDYLTR 202 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~~ 202 (276)
|++.++|...++.+.+
T Consensus 107 p~~~~~L~~~i~~~~~ 122 (133)
T 3b2n_A 107 ERSIEELVETINKVNN 122 (133)
T ss_dssp TSCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHc
Confidence 9999999777766554
No 32
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.87 E-value=9.2e-21 Score=151.43 Aligned_cols=122 Identities=25% Similarity=0.354 Sum_probs=111.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
+.+++||||||++..++.++..|+..||++..+.++.+|++.+ ....||+||+|+.||+++|+++++.|
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlvi~d~~l~~~~g~~~~~~l 73 (154)
T 2rjn_A 5 YKNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEAL-----------KGTSVQLVISDMRMPEMGGEVFLEQV 73 (154)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHH-----------TTSCCSEEEEESSCSSSCHHHHHHHH
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHH-----------hcCCCCEEEEecCCCCCCHHHHHHHH
Confidence 5678999999999999999999999999999999999999999 66789999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcC-CCeEEe
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDG-AEDFIV 185 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~G-a~d~l~ 185 (276)
++..| .+|||++|+........++++.| +++||.
T Consensus 74 ~~~~~---------------------------------------------~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~ 108 (154)
T 2rjn_A 74 AKSYP---------------------------------------------DIERVVISGYADAQATIDAVNRGKISRFLL 108 (154)
T ss_dssp HHHCT---------------------------------------------TSEEEEEECGGGHHHHHHHHHTTCCSEEEE
T ss_pred HHhCC---------------------------------------------CCcEEEEecCCCHHHHHHHHhccchheeee
Confidence 98766 79999999999988999999998 999999
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q 023816 186 KPVKLSDVKRIKDYLTRDV 204 (276)
Q Consensus 186 KPv~~~~L~~~~~~l~~~~ 204 (276)
||++.++|...+..+.+..
T Consensus 109 kP~~~~~L~~~i~~~~~~~ 127 (154)
T 2rjn_A 109 KPWEDEDVFKVVEKGLQLA 127 (154)
T ss_dssp SSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999977777665543
No 33
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.87 E-value=6.5e-21 Score=148.62 Aligned_cols=123 Identities=20% Similarity=0.307 Sum_probs=108.2
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHhh-CCCE-EEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHH
Q 023816 25 SDTEEVHVLAVDDSFVDRKVIERLLTI-SSCK-VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYEL 102 (276)
Q Consensus 25 ~~~~~~~VLIVdD~~~~~~~L~~~L~~-~g~~-v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~el 102 (276)
..+.+++||||||++..++.++.+|+. .||+ +..+.++.+|++.+ +...||+||+|+.||+++|+++
T Consensus 4 ~~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l-----------~~~~~dlii~d~~l~~~~g~~~ 72 (143)
T 3cnb_A 4 NVKNDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLL-----------HTVKPDVVMLDLMMVGMDGFSI 72 (143)
T ss_dssp -----CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHH-----------HHTCCSEEEEETTCTTSCHHHH
T ss_pred cccCCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHH-----------HhcCCCEEEEecccCCCcHHHH
Confidence 345578999999999999999999998 9999 89999999999998 5567999999999999999999
Q ss_pred HHHHHh--hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCC
Q 023816 103 LKKIKV--TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGA 180 (276)
Q Consensus 103 l~~Ir~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga 180 (276)
+++|++ ..+ .+|||++|+........++++.|+
T Consensus 73 ~~~l~~~~~~~---------------------------------------------~~~ii~~s~~~~~~~~~~~~~~g~ 107 (143)
T 3cnb_A 73 CHRIKSTPATA---------------------------------------------NIIVIAMTGALTDDNVSRIVALGA 107 (143)
T ss_dssp HHHHHTSTTTT---------------------------------------------TSEEEEEESSCCHHHHHHHHHTTC
T ss_pred HHHHHhCcccc---------------------------------------------CCcEEEEeCCCCHHHHHHHHhcCC
Confidence 999997 333 799999999999999999999999
Q ss_pred CeEEeCCCCHHHHHHHHHHHHHh
Q 023816 181 EDFIVKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 181 ~d~l~KPv~~~~L~~~~~~l~~~ 203 (276)
++||.||++.++|...+..+.+.
T Consensus 108 ~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 108 ETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp SEEEESSCCHHHHHHHHHHHHHT
T ss_pred cEEEeCCCCHHHHHHHHHHHHHh
Confidence 99999999999997777766544
No 34
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.87 E-value=6.7e-21 Score=150.29 Aligned_cols=122 Identities=26% Similarity=0.380 Sum_probs=108.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCE--EEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCK--VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~--v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
.+++||||||++..++.++.+|+..|+. +..+.++++|++.+ ....||+||+|+.||+++|++++++
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l-----------~~~~~dlii~D~~l~~~~g~~~~~~ 72 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQV-----------QQAKYDLIILDIGLPIANGFEVMSA 72 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHH-----------TTCCCSEEEECTTCGGGCHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHh-----------hcCCCCEEEEeCCCCCCCHHHHHHH
Confidence 4689999999999999999999999987 88899999999999 6778999999999999999999999
Q ss_pred HHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 106 IKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 106 Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
||+.. ....+|||++|+....+...++++.|+++||.
T Consensus 73 lr~~~-------------------------------------------~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~ 109 (144)
T 3kht_A 73 VRKPG-------------------------------------------ANQHTPIVILTDNVSDDRAKQCMAAGASSVVD 109 (144)
T ss_dssp HHSSS-------------------------------------------TTTTCCEEEEETTCCHHHHHHHHHTTCSEEEE
T ss_pred HHhcc-------------------------------------------cccCCCEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 99721 12279999999999999999999999999999
Q ss_pred CCC-CHHHHHHHHHHHHHh
Q 023816 186 KPV-KLSDVKRIKDYLTRD 203 (276)
Q Consensus 186 KPv-~~~~L~~~~~~l~~~ 203 (276)
||+ +.++|.+.+..+.+.
T Consensus 110 Kp~~~~~~l~~~i~~~l~~ 128 (144)
T 3kht_A 110 KSSNNVTDFYGRIYAIFSY 128 (144)
T ss_dssp CCTTSHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHH
Confidence 999 999997777666554
No 35
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.87 E-value=3.5e-21 Score=152.17 Aligned_cols=118 Identities=26% Similarity=0.390 Sum_probs=108.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
.+||||||++..++.++.+|+..||+|..+.++.+|++.+ ....||+||+|+.||+++|++++++|++.
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlvllD~~l~~~~g~~l~~~l~~~ 73 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFI-----------ERSKPQLIILDLKLPDMSGEDVLDWINQN 73 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHH-----------HHHCCSEEEECSBCSSSBHHHHHHHHHHT
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHH-----------HhcCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 4899999999999999999999999999999999999998 45579999999999999999999999986
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
.+ .+|||++|+........++++.|+++||.||++
T Consensus 74 ~~---------------------------------------------~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~ 108 (137)
T 3cfy_A 74 DI---------------------------------------------PTSVIIATAHGSVDLAVNLIQKGAEDFLEKPIN 108 (137)
T ss_dssp TC---------------------------------------------CCEEEEEESSCCHHHHHHHHHTTCSEEEESSCC
T ss_pred CC---------------------------------------------CCCEEEEEecCcHHHHHHHHHCCccEEEeCCCC
Confidence 65 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 023816 190 LSDVKRIKDYLTRD 203 (276)
Q Consensus 190 ~~~L~~~~~~l~~~ 203 (276)
.++|...+..+.+.
T Consensus 109 ~~~L~~~i~~~~~~ 122 (137)
T 3cfy_A 109 ADRLKTSVALHLKR 122 (137)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99997777665543
No 36
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.86 E-value=2.5e-21 Score=149.36 Aligned_cols=121 Identities=23% Similarity=0.432 Sum_probs=107.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCC-EEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSC-KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~-~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
.+++||||||++..++.++.+|+..|+ .+..+.++++|++.+ ....||+||+|+.||+++|++++++|
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~-----------~~~~~dlvl~D~~l~~~~g~~~~~~l 73 (129)
T 1p6q_A 5 EKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIM-----------AQNPHHLVISDFNMPKMDGLGLLQAV 73 (129)
T ss_dssp SCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHH-----------HTSCCSEEEECSSSCSSCHHHHHHHH
T ss_pred ccCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHH-----------HcCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 457899999999999999999999999 788899999999998 56679999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
|+.. ....+|||++|+........++++.|+++|+.|
T Consensus 74 ~~~~-------------------------------------------~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~K 110 (129)
T 1p6q_A 74 RANP-------------------------------------------ATKKAAFIILTAQGDRALVQKAAALGANNVLAK 110 (129)
T ss_dssp TTCT-------------------------------------------TSTTCEEEECCSCCCHHHHHHHHHHTCSCEECC
T ss_pred hcCc-------------------------------------------cccCCCEEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence 9632 123789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 023816 187 PVKLSDVKRIKDYLTR 202 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~~ 202 (276)
|++.++|...+..+.+
T Consensus 111 P~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 111 PFTIEKMKAAIEAVFG 126 (129)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999777766543
No 37
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.86 E-value=2.9e-21 Score=164.83 Aligned_cols=135 Identities=25% Similarity=0.377 Sum_probs=106.8
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHhhCCC-EEEEECCHHHHHHHhcccc--cccccCCCCCceeEEEEecCCCCCCHHHH
Q 023816 26 DTEEVHVLAVDDSFVDRKVIERLLTISSC-KVTAVDSGRRALQFLGLDE--EQSINGFDGLKVDLIITDYCMPGMTGYEL 102 (276)
Q Consensus 26 ~~~~~~VLIVdD~~~~~~~L~~~L~~~g~-~v~~a~~g~~al~~l~~~~--~~~~~~~~~~~~DlIL~D~~mp~~~G~el 102 (276)
...+.+||||||++.+++.++.+|+..|| .|..+.++++|++.+.... .+.........|||||+|+.||+++|+++
T Consensus 58 ~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el 137 (206)
T 3mm4_A 58 FLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEA 137 (206)
T ss_dssp TTTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHH
T ss_pred ccCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHH
Confidence 34567999999999999999999999999 8999999999999984310 00000112347999999999999999999
Q ss_pred HHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCC-CHHHHHHHHhcCCC
Q 023816 103 LKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSEN-ILARIDRCLEDGAE 181 (276)
Q Consensus 103 l~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~-~~~~~~~al~~Ga~ 181 (276)
+++||+... .....+|||++|++. ......++++.|++
T Consensus 138 ~~~lr~~~~-----------------------------------------~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~ 176 (206)
T 3mm4_A 138 TREIRKVEK-----------------------------------------SYGVRTPIIAVSGHDPGSEEARETIQAGMD 176 (206)
T ss_dssp HHHHHHHHH-----------------------------------------TTTCCCCEEEEESSCCCHHHHHHHHHHTCS
T ss_pred HHHHHhhhh-----------------------------------------hcCCCCcEEEEECCCCcHHHHHHHHhCCCC
Confidence 999997411 001279999999998 77889999999999
Q ss_pred eEEeCCCCHHHHHHHHHHHHHh
Q 023816 182 DFIVKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 182 d~l~KPv~~~~L~~~~~~l~~~ 203 (276)
+||.||++ +|.+.+..+.+.
T Consensus 177 ~~l~KP~~--~L~~~i~~~l~~ 196 (206)
T 3mm4_A 177 AFLDKSLN--QLANVIREIESK 196 (206)
T ss_dssp EEEETTCT--THHHHHHHHC--
T ss_pred EEEcCcHH--HHHHHHHHHHhh
Confidence 99999998 776666655543
No 38
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.86 E-value=2.7e-21 Score=150.99 Aligned_cols=121 Identities=21% Similarity=0.295 Sum_probs=111.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
.+++||||||++..++.++++|+..|+.+..+.++++|++.+ +...||+||+|+.||+++|+++++.||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l-----------~~~~~dlvi~d~~l~~~~g~~~~~~l~ 74 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLF-----------GLHAPDVIITDIRMPKLGGLEMLDRIK 74 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHH-----------HHHCCSEEEECSSCSSSCHHHHHHHHH
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHH-----------hccCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 368999999999999999999999999999999999999998 456799999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
+..+ .+|||++|+....+...++++.|+++||.||
T Consensus 75 ~~~~---------------------------------------------~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP 109 (137)
T 3hdg_A 75 AGGA---------------------------------------------KPYVIVISAFSEMKYFIKAIELGVHLFLPKP 109 (137)
T ss_dssp HTTC---------------------------------------------CCEEEECCCCCCHHHHHHHHHHCCSEECCSS
T ss_pred hcCC---------------------------------------------CCcEEEEecCcChHHHHHHHhCCcceeEcCC
Confidence 8766 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q 023816 188 VKLSDVKRIKDYLTRDV 204 (276)
Q Consensus 188 v~~~~L~~~~~~l~~~~ 204 (276)
++.++|...+..+.+..
T Consensus 110 ~~~~~l~~~i~~~~~~~ 126 (137)
T 3hdg_A 110 IEPGRLMETLEDFRHIK 126 (137)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999988887777653
No 39
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.86 E-value=4.4e-21 Score=170.29 Aligned_cols=123 Identities=23% Similarity=0.368 Sum_probs=109.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCC-ceeEEEEecCCCCCCHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGL-KVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~-~~DlIL~D~~mp~~~G~ell~~I 106 (276)
.+++||||||++..++.+...|+..|+.+..+.+|++|++.+ ... .||+||+|++||++||++++++|
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l-----------~~~~~~dlvllD~~mP~~dG~~l~~~l 191 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATL-----------EQHPAIRLVLVDYYMPEIDGISLVRML 191 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHH-----------HHCTTEEEEEECSCCSSSCHHHHHHHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHH-----------hcCCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 368999999999999999999999999999999999999998 333 49999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
|+..+ ...+|||++|+........+|++.||+|||.|
T Consensus 192 r~~~~-------------------------------------------~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~K 228 (259)
T 3luf_A 192 RERYS-------------------------------------------KQQLAIIGISVSDKRGLSARYLKQGANDFLNQ 228 (259)
T ss_dssp HHHCC-------------------------------------------TTTSEEEEEECSSSSSHHHHHHHTTCSEEEES
T ss_pred HhccC-------------------------------------------CCCCeEEEEEccCCHHHHHHHHhcChhheEcC
Confidence 98654 22689999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 023816 187 PVKLSDVKRIKDYLTRDV 204 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~~~~ 204 (276)
|++.++|...+..+.+..
T Consensus 229 P~~~~~L~~~i~~~l~~~ 246 (259)
T 3luf_A 229 PFEPEELQCRVSHNLEAL 246 (259)
T ss_dssp SCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhH
Confidence 999999976666555443
No 40
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.86 E-value=3e-21 Score=170.32 Aligned_cols=122 Identities=26% Similarity=0.523 Sum_probs=111.9
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 26 ~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
....++||||||++.+++.+..+|+..||+|..+.++.+|++.+ +...||+||+|++||+++|++++++
T Consensus 126 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l-----------~~~~~dlvl~D~~mp~~~G~~l~~~ 194 (254)
T 2ayx_A 126 DNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-----------SKNHIDIVLSDVNMPNMDGYRLTQR 194 (254)
T ss_dssp CCCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHH-----------HHSCCSEEEEEESSCSSCCHHHHHH
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------HhCCCCEEEEcCCCCCCCHHHHHHH
Confidence 44568999999999999999999999999999999999999999 5567999999999999999999999
Q ss_pred HHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 106 IKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 106 Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
||+..+ .+|||++|+....+...++++.|+++||.
T Consensus 195 ir~~~~---------------------------------------------~~piI~lt~~~~~~~~~~~~~~G~~~~l~ 229 (254)
T 2ayx_A 195 IRQLGL---------------------------------------------TLPVIGVTANALAEEKQRCLESGMDSCLS 229 (254)
T ss_dssp HHHHHC---------------------------------------------CSCEEEEESSTTSHHHHHHHHCCCEEEEE
T ss_pred HHhcCC---------------------------------------------CCcEEEEECCCCHHHHHHHHHcCCceEEE
Confidence 998655 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 023816 186 KPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 186 KPv~~~~L~~~~~~l~~~ 203 (276)
||++.++|.+.+..+.+.
T Consensus 230 KP~~~~~L~~~l~~~~~~ 247 (254)
T 2ayx_A 230 KPVTLDVIKQTLTLYAER 247 (254)
T ss_dssp SSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999998777766554
No 41
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.86 E-value=8.1e-21 Score=148.54 Aligned_cols=128 Identities=19% Similarity=0.252 Sum_probs=109.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSC--KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~--~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
.+++||||||++..+..++.+|+..|+ .+..+.++++|++.+..... .+..||+||+|+.||+++|++++++
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~------~~~~~dlvi~D~~l~~~~g~~~~~~ 81 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYA------AGRWPSIICIDINMPGINGWELIDL 81 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHT------SSCCCSEEEEESSCSSSCHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhc------cCCCCCEEEEcCCCCCCCHHHHHHH
Confidence 468999999999999999999999999 89999999999999832110 1268999999999999999999999
Q ss_pred HHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcC-CCeEE
Q 023816 106 IKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDG-AEDFI 184 (276)
Q Consensus 106 Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~G-a~d~l 184 (276)
||+..+ .....+|||++|+........++++.| +++||
T Consensus 82 l~~~~~-----------------------------------------~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l 120 (146)
T 3ilh_A 82 FKQHFQ-----------------------------------------PMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYV 120 (146)
T ss_dssp HHHHCG-----------------------------------------GGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEE
T ss_pred HHHhhh-----------------------------------------hccCCCeEEEEeCCCChHHHHHHHhcCCcceee
Confidence 998320 011279999999999999999999999 99999
Q ss_pred eCCCCHHHHHHHHHHHHH
Q 023816 185 VKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 185 ~KPv~~~~L~~~~~~l~~ 202 (276)
.||++.++|.+.+.....
T Consensus 121 ~KP~~~~~L~~~i~~~~~ 138 (146)
T 3ilh_A 121 SKPLTANALNNLYNKVLN 138 (146)
T ss_dssp CSSCCHHHHHHHHHHHHC
T ss_pred eCCCCHHHHHHHHHHHHH
Confidence 999999999777766553
No 42
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.86 E-value=1.9e-20 Score=144.73 Aligned_cols=128 Identities=26% Similarity=0.373 Sum_probs=108.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~--~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
+.+||||||++..++.++..|+..|+ .+..+.++.+|++.+....+.. ....||+||+|+.||+++|++++++|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~----~~~~~dlvi~d~~~~~~~g~~~~~~l 77 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYA----NASRPDLILLXLNLPKKDGREVLAEI 77 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGG----SCCCCSEEEECSSCSSSCHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccc----cCCCCcEEEEecCCCcccHHHHHHHH
Confidence 56899999999999999999999998 9999999999999993100000 01689999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
|+... ...+|||++|+....+...++++.|+++|+.|
T Consensus 78 ~~~~~-------------------------------------------~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~k 114 (140)
T 1k68_A 78 KSDPT-------------------------------------------LKRIPVVVLSTSINEDDIFHSYDLHVNCYITK 114 (140)
T ss_dssp HHSTT-------------------------------------------GGGSCEEEEESCCCHHHHHHHHHTTCSEEEEC
T ss_pred HcCcc-------------------------------------------cccccEEEEecCCcHHHHHHHHHhchhheecC
Confidence 97441 12689999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 023816 187 PVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~~~ 203 (276)
|++.++|...+..+.+.
T Consensus 115 P~~~~~l~~~i~~~~~~ 131 (140)
T 1k68_A 115 SANLSQLFQIVKGIEEF 131 (140)
T ss_dssp CSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999997777766544
No 43
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.86 E-value=9e-21 Score=147.82 Aligned_cols=121 Identities=22% Similarity=0.375 Sum_probs=107.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
.+.+||||||++..++.++.+|+..||++..+.++.+|+..+. ....||+||+|+.||+++|++++++||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~----------~~~~~dlvi~D~~l~~~~g~~~~~~l~ 75 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLH----------YQKRIGLMITDLRMQPESGLDLIRTIR 75 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHH----------HCTTEEEEEECSCCSSSCHHHHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHH----------hCCCCcEEEEeccCCCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999999882 223499999999999999999999999
Q ss_pred hh-CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 108 VT-TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 108 ~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
+. .+ .+|||++|+........++++.|+++||.|
T Consensus 76 ~~~~~---------------------------------------------~~~ii~~s~~~~~~~~~~~~~~g~~~~l~K 110 (136)
T 3hdv_A 76 ASERA---------------------------------------------ALSIIVVSGDTDVEEAVDVMHLGVVDFLLK 110 (136)
T ss_dssp TSTTT---------------------------------------------TCEEEEEESSCCHHHHHHHHHTTCSEEEES
T ss_pred hcCCC---------------------------------------------CCCEEEEeCCCChHHHHHHHhCCcceEEeC
Confidence 75 34 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 023816 187 PVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~~~ 203 (276)
|++.++|...++.+...
T Consensus 111 P~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 111 PVDLGKLLELVNKELKI 127 (136)
T ss_dssp SCCHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhcC
Confidence 99999997777766543
No 44
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.86 E-value=5.7e-22 Score=155.25 Aligned_cols=118 Identities=12% Similarity=0.110 Sum_probs=108.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCC-CEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISS-CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g-~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
....+||||||++..+..++.+|+..| |++..+.++++|++.+ ....||+||+|+.||+++|++++++
T Consensus 12 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l-----------~~~~~dlvi~D~~l~~~~g~~~~~~ 80 (135)
T 3snk_A 12 TKRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPP-----------ADTRPGIVILDLGGGDLLGKPGIVE 80 (135)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCC-----------TTCCCSEEEEEEETTGGGGSTTHHH
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHH-----------hccCCCEEEEeCCCCCchHHHHHHH
Confidence 346799999999999999999999999 9999999999999888 6778999999999999999999999
Q ss_pred HHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 106 IKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 106 Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
||+..+ .+|||++|+....+...++++.|+++||.
T Consensus 81 l~~~~~---------------------------------------------~~~ii~~s~~~~~~~~~~~~~~g~~~~l~ 115 (135)
T 3snk_A 81 ARALWA---------------------------------------------TVPLIAVSDELTSEQTRVLVRMNASDWLH 115 (135)
T ss_dssp HHGGGT---------------------------------------------TCCEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred HHhhCC---------------------------------------------CCcEEEEeCCCCHHHHHHHHHcCcHhhcc
Confidence 998666 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH
Q 023816 186 KPVKLSDVKRIKDYL 200 (276)
Q Consensus 186 KPv~~~~L~~~~~~l 200 (276)
||++.++|...+..+
T Consensus 116 KP~~~~~L~~~i~~~ 130 (135)
T 3snk_A 116 KPLDGKELLNAVTFH 130 (135)
T ss_dssp SSCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999997666554
No 45
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.86 E-value=7e-21 Score=144.33 Aligned_cols=115 Identities=27% Similarity=0.400 Sum_probs=104.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
.+||||||++..++.++..|+..||++..+.++.+|++.+ ....||+||+|+.||+++|++++++|++.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~-----------~~~~~dlvl~D~~l~~~~g~~~~~~l~~~ 70 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQF-----------EAEQPDIIILDLMLPEIDGLEVAKTIRKT 70 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HHHCCSEEEECSSCSSSCHHHHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHH-----------HhCCCCEEEEeccCCCCCHHHHHHHHHhC
Confidence 4899999999999999999999999999999999999988 45579999999999999999999999963
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
+ .+|||++|+........++++.|+++|+.||++
T Consensus 71 -~---------------------------------------------~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~ 104 (120)
T 2a9o_A 71 -S---------------------------------------------SVPILMLSAKDSEFDKVIGLELGADDYVTKPFS 104 (120)
T ss_dssp -C---------------------------------------------CCCEEEEESCCSHHHHHHHHHHTCSEEEESSCC
T ss_pred -C---------------------------------------------CCCEEEEecCCchHHHHHHHhCCHhheEeCCCC
Confidence 3 689999999999988999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 023816 190 LSDVKRIKDYLT 201 (276)
Q Consensus 190 ~~~L~~~~~~l~ 201 (276)
.++|...+..+.
T Consensus 105 ~~~l~~~i~~~~ 116 (120)
T 2a9o_A 105 NRELQARVKALL 116 (120)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999977666554
No 46
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.86 E-value=2.7e-21 Score=152.87 Aligned_cols=128 Identities=11% Similarity=0.152 Sum_probs=113.9
Q ss_pred CCCCCCCCccEEEEEeCCHHHHHHHHHHHhhCC-CEEEEECCHHHHHHHhcccccccccCCCC-CceeEEEEecCCCCCC
Q 023816 21 DLSPSDTEEVHVLAVDDSFVDRKVIERLLTISS-CKVTAVDSGRRALQFLGLDEEQSINGFDG-LKVDLIITDYCMPGMT 98 (276)
Q Consensus 21 ~~~~~~~~~~~VLIVdD~~~~~~~L~~~L~~~g-~~v~~a~~g~~al~~l~~~~~~~~~~~~~-~~~DlIL~D~~mp~~~ 98 (276)
...+......+||||||++..+..++.+|+..| |++..+.++.+++..+. +. ..||+||+|+.||+++
T Consensus 12 ~~~~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~----------~~~~~~dlvi~D~~l~~~~ 81 (146)
T 4dad_A 12 HENLYFQGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRT----------DGLDAFDILMIDGAALDTA 81 (146)
T ss_dssp -CCCCCGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCH----------HHHTTCSEEEEECTTCCHH
T ss_pred CCCCCcCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHH----------hcCCCCCEEEEeCCCCCcc
Confidence 344566778999999999999999999999999 99999999999988762 23 6899999999999999
Q ss_pred HHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhc
Q 023816 99 GYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLED 178 (276)
Q Consensus 99 G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~ 178 (276)
|++++++||+..| .+|||++|+....+...++++.
T Consensus 82 g~~~~~~l~~~~~---------------------------------------------~~~ii~lt~~~~~~~~~~~~~~ 116 (146)
T 4dad_A 82 ELAAIEKLSRLHP---------------------------------------------GLTCLLVTTDASSQTLLDAMRA 116 (146)
T ss_dssp HHHHHHHHHHHCT---------------------------------------------TCEEEEEESCCCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC---------------------------------------------CCcEEEEeCCCCHHHHHHHHHh
Confidence 9999999998777 7999999999999999999999
Q ss_pred CCCeEEeCCCCHHHHHHHHHHHHHh
Q 023816 179 GAEDFIVKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 179 Ga~d~l~KPv~~~~L~~~~~~l~~~ 203 (276)
|+++||.||++.++|...+..+.+.
T Consensus 117 ga~~~l~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 117 GVRDVLRWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp TEEEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCceeEcCCCCHHHHHHHHHHHHhh
Confidence 9999999999999998777766543
No 47
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.86 E-value=1.9e-20 Score=146.31 Aligned_cols=124 Identities=24% Similarity=0.448 Sum_probs=105.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
..+++||||||++..++.++.+|+..|++|..+.++.+|++.+ .... |+||+|+.||+++|++++++|
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~-----------~~~~-dlvllD~~lp~~~g~~~~~~l 72 (136)
T 1dcf_A 5 FTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVV-----------SHEH-KVVFMDVCMPGVENYQIALRI 72 (136)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHC-----------CTTC-SEEEEECCSSTTTTTHHHHHH
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHH-----------hccC-CEEEEeCCCCCCcHHHHHHHH
Confidence 4568999999999999999999999999999999999999988 4444 999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
++..+ .......+||++|+........++++.|+++||.|
T Consensus 73 ~~~~~----------------------------------------~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~K 112 (136)
T 1dcf_A 73 HEKFT----------------------------------------KQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLK 112 (136)
T ss_dssp HHHHC-----------------------------------------CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEES
T ss_pred HHhhh----------------------------------------hccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEEC
Confidence 85322 00011246888999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 023816 187 PVKLSDVKRIKDYLTR 202 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~~ 202 (276)
|++.++|...+..+.+
T Consensus 113 P~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 113 PVSLDNIRDVLSDLLE 128 (136)
T ss_dssp SCCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999777766543
No 48
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.86 E-value=1.8e-21 Score=151.03 Aligned_cols=119 Identities=21% Similarity=0.362 Sum_probs=106.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
+++||||||++..++.++.+|+..|+.+. .+.++++|++.+ ....||+||+|+.||+++|++++++||
T Consensus 1 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~-----------~~~~~dlii~d~~l~~~~g~~~~~~l~ 69 (134)
T 3f6c_A 1 SLNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRV-----------ETLKPDIVIIDVDIPGVNGIQVLETLR 69 (134)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHH-----------HHHCCSEEEEETTCSSSCHHHHHHHHH
T ss_pred CeEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHH-----------HhcCCCEEEEecCCCCCChHHHHHHHH
Confidence 37999999999999999999999999998 799999999998 556799999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
+..| .+|||++|+..+.....++++.|+++|+.||
T Consensus 70 ~~~~---------------------------------------------~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp 104 (134)
T 3f6c_A 70 KRQY---------------------------------------------SGIIIIVSAKNDHFYGKHCADAGANGFVSKK 104 (134)
T ss_dssp HTTC---------------------------------------------CSEEEEEECC---CTHHHHHHTTCSEEEEGG
T ss_pred hcCC---------------------------------------------CCeEEEEeCCCChHHHHHHHHhCCCEEEeCC
Confidence 8766 7999999999998899999999999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 023816 188 VKLSDVKRIKDYLTRD 203 (276)
Q Consensus 188 v~~~~L~~~~~~l~~~ 203 (276)
++.++|.+.+..+.+.
T Consensus 105 ~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 105 EGMNNIIAAIEAAKNG 120 (134)
T ss_dssp GCTHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHCC
Confidence 9999998777776654
No 49
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.86 E-value=1e-20 Score=151.28 Aligned_cols=122 Identities=26% Similarity=0.428 Sum_probs=111.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
+.+||||||++..+..+...|+..||+|..+.++.+|++.+ ....||+||+|+.||+++|+++++.|++
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dliild~~l~~~~g~~~~~~l~~ 71 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGL-----------SADFAGIVISDIRMPGMDGLALFRKILA 71 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTC-----------CTTCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHH-----------HhCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 57899999999999999999999999999999999999998 6678999999999999999999999998
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
..| .+|||++|+........++++.|+++||.||+
T Consensus 72 ~~~---------------------------------------------~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~ 106 (155)
T 1qkk_A 72 LDP---------------------------------------------DLPMILVTGHGDIPMAVQAIQDGAYDFIAKPF 106 (155)
T ss_dssp HCT---------------------------------------------TSCEEEEECGGGHHHHHHHHHTTCCEEEESSC
T ss_pred hCC---------------------------------------------CCCEEEEECCCChHHHHHHHhcCCCeEEeCCC
Confidence 766 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhc
Q 023816 189 KLSDVKRIKDYLTRDVNL 206 (276)
Q Consensus 189 ~~~~L~~~~~~l~~~~~~ 206 (276)
+.++|...+..+.+....
T Consensus 107 ~~~~L~~~i~~~~~~~~~ 124 (155)
T 1qkk_A 107 AADRLVQSARRAEEKRRL 124 (155)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999998777776655444
No 50
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.86 E-value=6.2e-21 Score=153.99 Aligned_cols=120 Identities=24% Similarity=0.351 Sum_probs=109.4
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhcccccccccCCCCC--ceeEEEEecCCCCCCHHH
Q 023816 25 SDTEEVHVLAVDDSFVDRKVIERLLTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGL--KVDLIITDYCMPGMTGYE 101 (276)
Q Consensus 25 ~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~--~~DlIL~D~~mp~~~G~e 101 (276)
....+++||||||++..++.++.+|+..||++. .+.++++|++.+ ... .||+||+|+.||+++|++
T Consensus 32 ~~~~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l-----------~~~~~~~dliilD~~l~~~~g~~ 100 (157)
T 3hzh_A 32 DTGIPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKY-----------KNHYPNIDIVTLXITMPKMDGIT 100 (157)
T ss_dssp TTTEECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-----------HHHGGGCCEEEECSSCSSSCHHH
T ss_pred CCCCceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH-----------HhcCCCCCEEEEeccCCCccHHH
Confidence 344568999999999999999999999999998 899999999999 444 789999999999999999
Q ss_pred HHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCC
Q 023816 102 LLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAE 181 (276)
Q Consensus 102 ll~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~ 181 (276)
++++||+..+ .+|||++|+..+.+...++++.|++
T Consensus 101 ~~~~lr~~~~---------------------------------------------~~~ii~ls~~~~~~~~~~~~~~g~~ 135 (157)
T 3hzh_A 101 CLSNIMEFDK---------------------------------------------NARVIMISALGKEQLVKDCLIKGAK 135 (157)
T ss_dssp HHHHHHHHCT---------------------------------------------TCCEEEEESCCCHHHHHHHHHTTCS
T ss_pred HHHHHHhhCC---------------------------------------------CCcEEEEeccCcHHHHHHHHHcCCC
Confidence 9999998777 7999999999999999999999999
Q ss_pred eEEeCCCCHHHHHHHHHHH
Q 023816 182 DFIVKPVKLSDVKRIKDYL 200 (276)
Q Consensus 182 d~l~KPv~~~~L~~~~~~l 200 (276)
+||.||++.++|.+.+..+
T Consensus 136 ~~l~KP~~~~~l~~~i~~~ 154 (157)
T 3hzh_A 136 TFIVKPLDRAKVLQRVMSV 154 (157)
T ss_dssp EEEESSCCHHHHHHHHHHT
T ss_pred EEEeCCCCHHHHHHHHHHH
Confidence 9999999999997666543
No 51
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.86 E-value=1.4e-20 Score=147.20 Aligned_cols=131 Identities=27% Similarity=0.401 Sum_probs=109.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhcccccccccCCCC--CceeEEEEecCCCCCCHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSC--KVTAVDSGRRALQFLGLDEEQSINGFDG--LKVDLIITDYCMPGMTGYEL 102 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~--~v~~a~~g~~al~~l~~~~~~~~~~~~~--~~~DlIL~D~~mp~~~G~el 102 (276)
+.+.+||||||++..++.++..|+..|+ .+..+.++.+|++.+....+. +-.. ..||+||+|+.||+++|+++
T Consensus 4 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~---~~~~~~~~~dlvi~D~~l~~~~g~~~ 80 (149)
T 1k66_A 4 NATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSY---CNPDIAPRPAVILLDLNLPGTDGREV 80 (149)
T ss_dssp CTTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSS---SCGGGCCCCSEEEECSCCSSSCHHHH
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccc---cCcccCCCCcEEEEECCCCCCCHHHH
Confidence 4578999999999999999999999998 899999999999998321000 0001 68999999999999999999
Q ss_pred HHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCe
Q 023816 103 LKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAED 182 (276)
Q Consensus 103 l~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d 182 (276)
+++||+... ...+|||++|+........++++.|+++
T Consensus 81 ~~~l~~~~~-------------------------------------------~~~~~ii~~t~~~~~~~~~~~~~~g~~~ 117 (149)
T 1k66_A 81 LQEIKQDEV-------------------------------------------LKKIPVVIMTTSSNPKDIEICYSYSISS 117 (149)
T ss_dssp HHHHTTSTT-------------------------------------------GGGSCEEEEESCCCHHHHHHHHHTTCSE
T ss_pred HHHHHhCcc-------------------------------------------cCCCeEEEEeCCCCHHHHHHHHHCCCCE
Confidence 999997431 1278999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHHHh
Q 023816 183 FIVKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 183 ~l~KPv~~~~L~~~~~~l~~~ 203 (276)
||.||++.++|...+..+.+.
T Consensus 118 ~l~kP~~~~~l~~~i~~~~~~ 138 (149)
T 1k66_A 118 YIVKPLEIDRLTETVQTFIKY 138 (149)
T ss_dssp EEECCSSHHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHH
Confidence 999999999997777666543
No 52
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.85 E-value=1.2e-20 Score=148.87 Aligned_cols=118 Identities=22% Similarity=0.308 Sum_probs=107.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
.++||||||++..++.++.+|+..|+.+..+.++.+|++.+ ....||+||+|+.||+++|++++++|++
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~dlvllD~~l~~~~g~~l~~~l~~ 72 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKI-----------FSNKYDLIFLEIILSDGDGWTLCKKIRN 72 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHH-----------HHCCCSEEEEESEETTEEHHHHHHHHHT
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHHcc
Confidence 57999999999999999999999999999999999999998 4567999999999999999999999995
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
.. .+|||++|+........++++.|+++||.||+
T Consensus 73 ~~----------------------------------------------~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~ 106 (136)
T 2qzj_A 73 VT----------------------------------------------TCPIVYMTYINEDQSILNALNSGGDDYLIKPL 106 (136)
T ss_dssp TC----------------------------------------------CCCEEEEESCCCHHHHHHHHHTTCCEEEESSC
T ss_pred CC----------------------------------------------CCCEEEEEcCCCHHHHHHHHHcCCcEEEECCC
Confidence 21 58999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 023816 189 KLSDVKRIKDYLTRD 203 (276)
Q Consensus 189 ~~~~L~~~~~~l~~~ 203 (276)
+.++|...+..+.+.
T Consensus 107 ~~~~L~~~l~~~~~~ 121 (136)
T 2qzj_A 107 NLEILYAKVKAILRR 121 (136)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999997777665543
No 53
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.85 E-value=1e-20 Score=147.16 Aligned_cols=118 Identities=25% Similarity=0.353 Sum_probs=107.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
+.+||||||++..+..+...|+..||.+..+.++.+|++.+ ....||+||+|+.||+++|++++++|++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~-----------~~~~~dlvl~D~~l~~~~g~~~~~~l~~ 71 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKA-----------ETEKPDLIVLDVMLPKLDGIEVCKQLRQ 71 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HHHCCSEEEEESSCSSSCHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHH-----------hhcCCCEEEEecCCCCCCHHHHHHHHHc
Confidence 36899999999999999999999999999999999999988 4557999999999999999999999998
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
..+ .+|||++|+........++++.|+++||.||+
T Consensus 72 ~~~---------------------------------------------~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~ 106 (136)
T 1mvo_A 72 QKL---------------------------------------------MFPILMLTAKDEEFDKVLGLELGADDYMTKPF 106 (136)
T ss_dssp TTC---------------------------------------------CCCEEEEECTTCCCCHHHHHHTTCCEEEESSC
T ss_pred CCC---------------------------------------------CCCEEEEECCCCHHHHHHHHhCCCCEEEECCC
Confidence 655 78999999998888888999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 023816 189 KLSDVKRIKDYLTR 202 (276)
Q Consensus 189 ~~~~L~~~~~~l~~ 202 (276)
+.++|...+..+.+
T Consensus 107 ~~~~l~~~i~~~~~ 120 (136)
T 1mvo_A 107 SPREVNARVKAILR 120 (136)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999777766554
No 54
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.85 E-value=9.3e-21 Score=158.77 Aligned_cols=119 Identities=23% Similarity=0.362 Sum_probs=108.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
...+||||||++..+..++.+|+..||+|..+.++.+|++.+ ....||+||+|+.||+++|++++++|+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~dlvl~D~~lp~~~g~~~~~~l~ 71 (208)
T 1yio_A 3 AKPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHR-----------RPEQHGCLVLDMRMPGMSGIELQEQLT 71 (208)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHC-----------CTTSCEEEEEESCCSSSCHHHHHHHHH
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhh-----------hccCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 356899999999999999999999999999999999999998 667899999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
+..| .+|||++|+..+.....++++.||+||+.||
T Consensus 72 ~~~~---------------------------------------------~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp 106 (208)
T 1yio_A 72 AISD---------------------------------------------GIPIVFITAHGDIPMTVRAMKAGAIEFLPKP 106 (208)
T ss_dssp HTTC---------------------------------------------CCCEEEEESCTTSCCCHHHHHTTEEEEEESS
T ss_pred hcCC---------------------------------------------CCCEEEEeCCCCHHHHHHHHHCCCcEEEeCC
Confidence 8666 7999999999998889999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 023816 188 VKLSDVKRIKDYLTR 202 (276)
Q Consensus 188 v~~~~L~~~~~~l~~ 202 (276)
++.++|...+..+.+
T Consensus 107 ~~~~~L~~~i~~~~~ 121 (208)
T 1yio_A 107 FEEQALLDAIEQGLQ 121 (208)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999666655443
No 55
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.85 E-value=4.2e-21 Score=147.29 Aligned_cols=119 Identities=24% Similarity=0.369 Sum_probs=106.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
.+||||||++..++.++..|+..|+++..+.++.+|++.+ ....||+||+|+.||+++|++++++||+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~-----------~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 71 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-----------NEPWPDLILLAWMLPGGSGIQFIKHLRRE 71 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTC-----------SSSCCSEEEEESEETTEEHHHHHHHHHTS
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHH-----------hccCCCEEEEecCCCCCCHHHHHHHHHhC
Confidence 5899999999999999999999999999999999999988 66789999999999999999999999964
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
. ..+.+|||++|+........++++.|+++|+.||++
T Consensus 72 ~-------------------------------------------~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~ 108 (127)
T 2jba_A 72 S-------------------------------------------MTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFS 108 (127)
T ss_dssp T-------------------------------------------TTTTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCC
T ss_pred c-------------------------------------------ccCCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCC
Confidence 3 112799999999998888999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023816 190 LSDVKRIKDYLTR 202 (276)
Q Consensus 190 ~~~L~~~~~~l~~ 202 (276)
.++|...+..+.+
T Consensus 109 ~~~l~~~i~~~~~ 121 (127)
T 2jba_A 109 PKELVARIKAVMR 121 (127)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999777666543
No 56
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.85 E-value=6.6e-21 Score=145.60 Aligned_cols=118 Identities=28% Similarity=0.392 Sum_probs=99.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
.+||||||++..++.++.+|+..|+++..+.++.+|++.+ ....||+||+|+.||+++|++++++||+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~-----------~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 70 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIA-----------RENKPDLILMDIQLPEISGLEVTKWLKED 70 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHH-----------HHHCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 4799999999999999999999999999999999999988 45579999999999999999999999973
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
.. ...+|||++|+........++++.|+++||.||++
T Consensus 71 ~~-------------------------------------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~ 107 (124)
T 1mb3_A 71 DD-------------------------------------------LAHIPVVAVTAFAMKGDEERIREGGCEAYISKPIS 107 (124)
T ss_dssp TT-------------------------------------------TTTSCEEEEC------CHHHHHHHTCSEEECSSCC
T ss_pred cc-------------------------------------------ccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCC
Confidence 21 22689999999988888899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 023816 190 LSDVKRIKDYLT 201 (276)
Q Consensus 190 ~~~L~~~~~~l~ 201 (276)
.++|...+..+.
T Consensus 108 ~~~l~~~i~~~~ 119 (124)
T 1mb3_A 108 VVHFLETIKRLL 119 (124)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999977666554
No 57
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.85 E-value=1.7e-20 Score=146.10 Aligned_cols=119 Identities=22% Similarity=0.249 Sum_probs=108.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCC-----CCCHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-----GMTGYEL 102 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp-----~~~G~el 102 (276)
.+++||||||++..+..++..|+..|+++..+.++.+|++.+ ....||+||+|+.|| +++|+++
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlvi~d~~~~~~~~~~~~g~~~ 70 (140)
T 2qr3_A 2 SLGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVL-----------REENPEVVLLDMNFTSGINNGNEGLFW 70 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHH-----------HHSCEEEEEEETTTTC-----CCHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHH-----------HcCCCCEEEEeCCcCCCCCCCccHHHH
Confidence 468999999999999999999999999999999999999999 556799999999999 9999999
Q ss_pred HHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCe
Q 023816 103 LKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAED 182 (276)
Q Consensus 103 l~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d 182 (276)
+++|++..+ .+|||++|+........++++.|+++
T Consensus 71 ~~~l~~~~~---------------------------------------------~~~ii~ls~~~~~~~~~~~~~~g~~~ 105 (140)
T 2qr3_A 71 LHEIKRQYR---------------------------------------------DLPVVLFTAYADIDLAVRGIKEGASD 105 (140)
T ss_dssp HHHHHHHCT---------------------------------------------TCCEEEEEEGGGHHHHHHHHHTTCCE
T ss_pred HHHHHhhCc---------------------------------------------CCCEEEEECCCCHHHHHHHHHcCchh
Confidence 999998766 79999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHHH
Q 023816 183 FIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 183 ~l~KPv~~~~L~~~~~~l~~ 202 (276)
|+.||++.++|...+..+.+
T Consensus 106 ~l~kp~~~~~l~~~l~~~~~ 125 (140)
T 2qr3_A 106 FVVKPWDNQKLLETLLNAAS 125 (140)
T ss_dssp EEEESCCHHHHHHHHHHHHT
T ss_pred eeeCCCCHHHHHHHHHHHHH
Confidence 99999999999777766654
No 58
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.85 E-value=6.5e-21 Score=150.44 Aligned_cols=119 Identities=23% Similarity=0.296 Sum_probs=106.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCC-CceeEEEEecCCCC-CCHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDG-LKVDLIITDYCMPG-MTGYELLKK 105 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~-~~~DlIL~D~~mp~-~~G~ell~~ 105 (276)
.+.+||||||++..++.++.+|+..||++..+.++.+|++.+ .. ..||+||+|+.||+ ++|++++++
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~~dlvi~D~~l~~~~~g~~~~~~ 72 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKV-----------SGGWYPDLILMDIELGEGMDGVQTALA 72 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HTTCCCSEEEEESSCSSSCCHHHHHHH
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHH-----------hcCCCCCEEEEeccCCCCCCHHHHHHH
Confidence 467999999999999999999999999999999999999998 44 68999999999995 999999999
Q ss_pred HHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 106 IKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 106 Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
||+. + .+|||++|+..+.....++++.|+++||.
T Consensus 73 l~~~-~---------------------------------------------~~~ii~ls~~~~~~~~~~~~~~g~~~~l~ 106 (140)
T 3h5i_A 73 IQQI-S---------------------------------------------ELPVVFLTAHTEPAVVEKIRSVTAYGYVM 106 (140)
T ss_dssp HHHH-C---------------------------------------------CCCEEEEESSSSCCCCGGGGGSCEEEEEE
T ss_pred HHhC-C---------------------------------------------CCCEEEEECCCCHHHHHHHHhCCCcEEEe
Confidence 9975 4 79999999999888888999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 023816 186 KPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 186 KPv~~~~L~~~~~~l~~~ 203 (276)
||++.++|...+..+.+.
T Consensus 107 KP~~~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 107 KSATEQVLITIVEMALRL 124 (140)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999997777766554
No 59
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.85 E-value=1.4e-20 Score=148.19 Aligned_cols=120 Identities=25% Similarity=0.365 Sum_probs=103.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
.++||||||++..++.++.+|+..||.+..+.++.+|++.+ ....||+||+|+.||+++|++++++|++
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l-----------~~~~~dlvi~D~~l~~~~g~~~~~~l~~ 71 (138)
T 3c3m_A 3 LYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEAL-----------NATPPDLVLLDIMMEPMDGWETLERIKT 71 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HHSCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHH-----------hccCCCEEEEeCCCCCCCHHHHHHHHHc
Confidence 57999999999999999999999999999999999999998 4567999999999999999999999996
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
..+ ...+|||++|+.........++.+|+++||.||+
T Consensus 72 ~~~-------------------------------------------~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~ 108 (138)
T 3c3m_A 72 DPA-------------------------------------------TRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPT 108 (138)
T ss_dssp STT-------------------------------------------TTTSCEEEEESSCCCHHHHHHTTTTCSEEEECCC
T ss_pred Ccc-------------------------------------------cCCCCEEEEECCCChHHHHHHhhcCHhheEeCCC
Confidence 321 2368999999987766666667778899999999
Q ss_pred CHHHHHHHHHHHHH
Q 023816 189 KLSDVKRIKDYLTR 202 (276)
Q Consensus 189 ~~~~L~~~~~~l~~ 202 (276)
+.++|...+..+.+
T Consensus 109 ~~~~L~~~i~~~~~ 122 (138)
T 3c3m_A 109 THHQLYEAIEHVLA 122 (138)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHH
Confidence 99999777766543
No 60
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.85 E-value=1.1e-20 Score=150.81 Aligned_cols=120 Identities=25% Similarity=0.452 Sum_probs=108.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCc-eeEEEEecCCCCCCHHHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLK-VDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~-~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
+.+||||||++..++.++.+|+. |+++..+.++.+|++.+ .... ||+||+|+.||+++|++++++||
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l-----------~~~~~~dlvi~D~~l~~~~g~~~~~~l~ 71 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACI-----------KKSDPFSVIMVDMRMPGMEGTEVIQKAR 71 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHH-----------HHSCCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHH-----------HcCCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 57999999999999999999985 99999999999999998 3444 69999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcC-CCeEEeC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDG-AEDFIVK 186 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~G-a~d~l~K 186 (276)
+..| .+|||++|+..+.....++++.| +++||.|
T Consensus 72 ~~~~---------------------------------------------~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~K 106 (151)
T 3kcn_A 72 LISP---------------------------------------------NSVYLMLTGNQDLTTAMEAVNEGQVFRFLNK 106 (151)
T ss_dssp HHCS---------------------------------------------SCEEEEEECGGGHHHHHHHHHHTCCSEEEES
T ss_pred hcCC---------------------------------------------CcEEEEEECCCCHHHHHHHHHcCCeeEEEcC
Confidence 8777 79999999999999999999999 9999999
Q ss_pred CCCHHHHHHHHHHHHHhhh
Q 023816 187 PVKLSDVKRIKDYLTRDVN 205 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~~~~~ 205 (276)
|++.++|...+..+.+...
T Consensus 107 P~~~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 107 PCQMSDIKAAINAGIKQYD 125 (151)
T ss_dssp SCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 9999999777776665443
No 61
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.85 E-value=1.6e-21 Score=177.14 Aligned_cols=116 Identities=22% Similarity=0.229 Sum_probs=104.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCC-CCCHHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-GMTGYELLKKI 106 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp-~~~G~ell~~I 106 (276)
..+||+|||++.++..++.+|+..||+|. .+.||++|++.+ ....|||||+|++|| +|||+++++.|
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~-----------~~~~~dlvl~D~~MPd~mdG~e~~~~i 228 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAV-----------TRRTPGLVLADIQLADGSSGIDAVKDI 228 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-----------HHCCCSEEEEESCCTTSCCTTTTTHHH
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHH-----------HhCCCCEEEEcCCCCCCCCHHHHHHHH
Confidence 45899999999999999999999999999 899999999999 556799999999999 89999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
|+.. .+|||++|++. +...+|+++|++|||.|
T Consensus 229 r~~~----------------------------------------------~~piI~lT~~~--~~~~~~~~~G~~~~l~K 260 (286)
T 3n0r_A 229 LGRM----------------------------------------------DVPVIFITAFP--ERLLTGERPEPTFLITK 260 (286)
T ss_dssp HHHT----------------------------------------------TCCEEEEESCG--GGGCCSSSCCCSSEEES
T ss_pred HhcC----------------------------------------------CCCEEEEeCCH--HHHHHHHhCCCcEEEeC
Confidence 9632 69999999985 35678999999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 023816 187 PVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~~~ 203 (276)
|++.++|...+..+...
T Consensus 261 P~~~~~L~~~i~~~l~~ 277 (286)
T 3n0r_A 261 PFQPETVKAAIGQALFF 277 (286)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999998777776654
No 62
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.85 E-value=1.3e-20 Score=146.17 Aligned_cols=116 Identities=20% Similarity=0.361 Sum_probs=104.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 30 VHVLAVDDSFVDRKVIERLLTIS-SCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~-g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
++||||||++..++.++.+|+.. |+.+. .+.++.+|++.+ ....||+||+|+.||+++|++++++|+
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~-----------~~~~~dlvllD~~l~~~~g~~~~~~l~ 71 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQML-----------EEKRPDILLLDIIMPHLDGLAVLERIR 71 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHH-----------HHHCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-----------hcCCCCEEEEecCCCCCCHHHHHHHHH
Confidence 68999999999999999999987 88876 799999999998 455799999999999999999999999
Q ss_pred hh-CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 108 VT-TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 108 ~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
+. .+ .+|||++|+........++++.|+++||.|
T Consensus 72 ~~~~~---------------------------------------------~~~ii~ls~~~~~~~~~~~~~~ga~~~l~K 106 (130)
T 1dz3_A 72 AGFEH---------------------------------------------QPNVIMLTAFGQEDVTKKAVELGASYFILK 106 (130)
T ss_dssp HHCSS---------------------------------------------CCEEEEEEETTCHHHHHHHHHTTCEEEEEC
T ss_pred hcCCC---------------------------------------------CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Confidence 74 33 689999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 023816 187 PVKLSDVKRIKDYLT 201 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~ 201 (276)
|++.++|...+..+.
T Consensus 107 P~~~~~l~~~i~~~~ 121 (130)
T 1dz3_A 107 PFDMENLAHHIRQVY 121 (130)
T ss_dssp SSCCTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999977766654
No 63
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.85 E-value=2.9e-20 Score=145.90 Aligned_cols=117 Identities=23% Similarity=0.348 Sum_probs=109.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
+.+||||||++..++.++..|+..||++..+.++.+|++.+ +...||+||+|+ ||+++|+++++.|++
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlvi~d~-~~~~~g~~~~~~l~~ 71 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFL-----------RREKIDLVFVDV-FEGEESLNLIRRIRE 71 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHH-----------TTSCCSEEEEEC-TTTHHHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHH-----------hccCCCEEEEeC-CCCCcHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999 667899999999 999999999999998
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
..+ .+|||++|+........++++.|+++|+.||+
T Consensus 72 ~~~---------------------------------------------~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~ 106 (142)
T 2qxy_A 72 EFP---------------------------------------------DTKVAVLSAYVDKDLIINSVKAGAVDYILKPF 106 (142)
T ss_dssp HCT---------------------------------------------TCEEEEEESCCCHHHHHHHHHHTCSCEEESSC
T ss_pred HCC---------------------------------------------CCCEEEEECCCCHHHHHHHHHCCcceeEeCCC
Confidence 766 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 023816 189 KLSDVKRIKDYLTR 202 (276)
Q Consensus 189 ~~~~L~~~~~~l~~ 202 (276)
+.++|...+..+.+
T Consensus 107 ~~~~l~~~i~~~~~ 120 (142)
T 2qxy_A 107 RLDYLLERVKKIIS 120 (142)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999777766654
No 64
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.85 E-value=1.5e-20 Score=142.68 Aligned_cols=116 Identities=24% Similarity=0.380 Sum_probs=105.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
++||||||++..++.++..|+..|+.+..+.++.+++..+ ....||+||+|+.||+++|++++++|++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvi~D~~l~~~~g~~~~~~l~~- 69 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEA-----------ATRKPDLIILDLGLPDGDGIEFIRDLRQ- 69 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHH-----------HHHCCSEEEEESEETTEEHHHHHHHHHT-
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHH-----------hcCCCCEEEEeCCCCCCcHHHHHHHHHh-
Confidence 5899999999999999999999999999999999999887 4457999999999999999999999994
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
.+ .+|+|++|+........++++.|+++|+.||++
T Consensus 70 ~~---------------------------------------------~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~ 104 (121)
T 1zh2_A 70 WS---------------------------------------------AVPVIVLSARSEESDKIAALDAGADDYLSKPFG 104 (121)
T ss_dssp TC---------------------------------------------CCCEEEEESCCSHHHHHHHHHHTCSEEEESSCC
T ss_pred CC---------------------------------------------CCcEEEEECCCCHHHHHHHHhcCCCeEEeCCcC
Confidence 34 689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023816 190 LSDVKRIKDYLTR 202 (276)
Q Consensus 190 ~~~L~~~~~~l~~ 202 (276)
.++|...+..+.+
T Consensus 105 ~~~l~~~i~~~~~ 117 (121)
T 1zh2_A 105 IGELQARLRVALR 117 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999776665543
No 65
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.85 E-value=3.2e-20 Score=144.57 Aligned_cols=120 Identities=18% Similarity=0.297 Sum_probs=108.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCC-CCCHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-GMTGYELLK 104 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp-~~~G~ell~ 104 (276)
..+++||||||++..++.++..|+..||++. .+.++.+|++.+ ....||+||+|+.|| +++|+++++
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~-----------~~~~~dlii~d~~~~~~~~g~~~~~ 75 (140)
T 3cg0_A 7 DDLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCA-----------PDLRPDIALVDIMLCGALDGVETAA 75 (140)
T ss_dssp -CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-----------HHHCCSEEEEESSCCSSSCHHHHHH
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHH-----------HhCCCCEEEEecCCCCCCCHHHHHH
Confidence 4578999999999999999999999999999 499999999998 455799999999999 799999999
Q ss_pred HHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 105 KIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 105 ~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
+|++. + .+|||++|+........++++.|+++||
T Consensus 76 ~l~~~-~---------------------------------------------~~~ii~ls~~~~~~~~~~~~~~g~~~~l 109 (140)
T 3cg0_A 76 RLAAG-C---------------------------------------------NLPIIFITSSQDVETFQRAKRVNPFGYL 109 (140)
T ss_dssp HHHHH-S---------------------------------------------CCCEEEEECCCCHHHHHHHHTTCCSEEE
T ss_pred HHHhC-C---------------------------------------------CCCEEEEecCCCHHHHHHHHhcCCCEEE
Confidence 99976 5 7999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHh
Q 023816 185 VKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 185 ~KPv~~~~L~~~~~~l~~~ 203 (276)
.||++.++|...+..+.+.
T Consensus 110 ~kp~~~~~l~~~i~~~~~~ 128 (140)
T 3cg0_A 110 AKPVAADTLHRSIEMAIHK 128 (140)
T ss_dssp EESCCHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHhc
Confidence 9999999997777766544
No 66
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.85 E-value=2.3e-20 Score=144.59 Aligned_cols=119 Identities=26% Similarity=0.360 Sum_probs=101.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
..+||||||++..+..++.+|+ .|+++..+.++.+|++.+ ....||+||+|+.||+++|++++++||+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l-----------~~~~~dlvi~d~~l~~~~g~~~~~~l~~ 71 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQA-----------LAHPPDVLISDVNMDGMDGYALCGHFRS 71 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHH-----------HHSCCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 5799999999999999999999 899999999999999998 5567999999999999999999999997
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
..+ .+.+|||++|+...... .++++.|+++||.||+
T Consensus 72 ~~~-------------------------------------------~~~~pii~~s~~~~~~~-~~~~~~g~~~~l~KP~ 107 (133)
T 3nhm_A 72 EPT-------------------------------------------LKHIPVIFVSGYAPRTE-GPADQPVPDAYLVKPV 107 (133)
T ss_dssp STT-------------------------------------------TTTCCEEEEESCCC------TTSCCCSEEEESSC
T ss_pred CCc-------------------------------------------cCCCCEEEEeCCCcHhH-HHHhhcCCceEEeccC
Confidence 421 23789999999988777 8999999999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 023816 189 KLSDVKRIKDYLTRD 203 (276)
Q Consensus 189 ~~~~L~~~~~~l~~~ 203 (276)
+.++|...+..+.+.
T Consensus 108 ~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 108 KPPVLIAQLHALLAR 122 (133)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999997777666544
No 67
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.85 E-value=2.4e-20 Score=157.35 Aligned_cols=121 Identities=24% Similarity=0.428 Sum_probs=108.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCC-CEE-EEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISS-CKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g-~~v-~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~ 104 (276)
..+++||||||++..+..++.+|+..+ +.+ ..+.++.+|++.+ ....||+||+|+.||+++|+++++
T Consensus 3 ~~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~-----------~~~~~dlvllD~~lp~~~g~~~~~ 71 (215)
T 1a04_A 3 QEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELA-----------ESLDPDLILLDLNMPGMNGLETLD 71 (215)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHH-----------HHHCCSEEEEETTSTTSCHHHHHH
T ss_pred CCceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH-----------HhcCCCEEEEeCCCCCCcHHHHHH
Confidence 346899999999999999999999874 887 6799999999998 455799999999999999999999
Q ss_pred HHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 105 KIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 105 ~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
+||+..| .+|||++|+....+...++++.|+++||
T Consensus 72 ~lr~~~~---------------------------------------------~~~ii~ls~~~~~~~~~~~~~~Ga~~~l 106 (215)
T 1a04_A 72 KLREKSL---------------------------------------------SGRIVVFSVSNHEEDVVTALKRGADGYL 106 (215)
T ss_dssp HHHHSCC---------------------------------------------CSEEEEEECCCCHHHHHHHHHTTCSEEE
T ss_pred HHHHhCC---------------------------------------------CCcEEEEECCCCHHHHHHHHHcCCcEEE
Confidence 9998666 7999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHh
Q 023816 185 VKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 185 ~KPv~~~~L~~~~~~l~~~ 203 (276)
.||++.++|...+..+.+.
T Consensus 107 ~Kp~~~~~L~~~i~~~~~~ 125 (215)
T 1a04_A 107 LKDMEPEDLLKALHQAAAG 125 (215)
T ss_dssp ETTCCHHHHHHHHHHHHHS
T ss_pred eCCCCHHHHHHHHHHHHcC
Confidence 9999999997777766553
No 68
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.84 E-value=1.2e-20 Score=147.80 Aligned_cols=121 Identities=21% Similarity=0.350 Sum_probs=109.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
+.+++||||||++..++.++..|+..||+|..+.++++|++.+ +...||+||+|+.||+++|++++++|
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlii~d~~l~~~~g~~~~~~l 73 (142)
T 3cg4_A 5 EHKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLL-----------KKGFSGVVLLDIMMPGMDGWDTIRAI 73 (142)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HTCCCEEEEEESCCSSSCHHHHHHHH
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 4578999999999999999999999999999999999999999 56679999999999999999999999
Q ss_pred Hh--hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 107 KV--TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 107 r~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
++ ..+ .+|||++|+........++++.|+++||
T Consensus 74 ~~~~~~~---------------------------------------------~~pii~~s~~~~~~~~~~~~~~g~~~~l 108 (142)
T 3cg4_A 74 LDNSLEQ---------------------------------------------GIAIVMLTAKNAPDAKMIGLQEYVVDYI 108 (142)
T ss_dssp HHTTCCT---------------------------------------------TEEEEEEECTTCCCCSSTTGGGGEEEEE
T ss_pred HhhcccC---------------------------------------------CCCEEEEECCCCHHHHHHHHhcCccEEE
Confidence 97 344 7999999999888888899999999999
Q ss_pred eCCCCHHHHHHHHHHHHHh
Q 023816 185 VKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 185 ~KPv~~~~L~~~~~~l~~~ 203 (276)
.||++.++|...+..+.+.
T Consensus 109 ~kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 109 TKPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp ESSCCHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHH
Confidence 9999999997777665543
No 69
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.84 E-value=3.8e-20 Score=147.53 Aligned_cols=125 Identities=25% Similarity=0.374 Sum_probs=108.9
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHHhhCCCE--EEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHH
Q 023816 23 SPSDTEEVHVLAVDDSFVDRKVIERLLTISSCK--VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGY 100 (276)
Q Consensus 23 ~~~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~--v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ 100 (276)
.+....+.+||||||++..++.++.+|+..|+. +..+.++.+|++.+ ....||+||+|+.||+++|+
T Consensus 9 ~~~~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l-----------~~~~~dlii~d~~l~~~~g~ 77 (152)
T 3eul_A 9 SNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELI-----------KAHLPDVALLDYRMPGMDGA 77 (152)
T ss_dssp -----CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHH-----------HHHCCSEEEEETTCSSSCHH
T ss_pred CCCCCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHH
Confidence 344566889999999999999999999999854 55799999999998 55679999999999999999
Q ss_pred HHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCC
Q 023816 101 ELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGA 180 (276)
Q Consensus 101 ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga 180 (276)
+++++||+..| .+|||++|+..+.....++++.|+
T Consensus 78 ~~~~~l~~~~~---------------------------------------------~~~ii~~s~~~~~~~~~~~~~~g~ 112 (152)
T 3eul_A 78 QVAAAVRSYEL---------------------------------------------PTRVLLISAHDEPAIVYQALQQGA 112 (152)
T ss_dssp HHHHHHHHTTC---------------------------------------------SCEEEEEESCCCHHHHHHHHHTTC
T ss_pred HHHHHHHhcCC---------------------------------------------CCeEEEEEccCCHHHHHHHHHcCC
Confidence 99999998766 799999999999999999999999
Q ss_pred CeEEeCCCCHHHHHHHHHHHHHh
Q 023816 181 EDFIVKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 181 ~d~l~KPv~~~~L~~~~~~l~~~ 203 (276)
++||.||++.++|...+..+.+.
T Consensus 113 ~~~l~Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 113 AGFLLKDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp SEEEETTCCHHHHHHHHHHHHHC
T ss_pred CEEEecCCCHHHHHHHHHHHHcC
Confidence 99999999999997777666543
No 70
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.84 E-value=3.5e-20 Score=143.42 Aligned_cols=121 Identities=19% Similarity=0.342 Sum_probs=101.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
..+.+||||||++..+..++.+|+..||.+..+.++.+|++.+ ....||+||+|+.||+++|++++++|
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlii~d~~l~~~~g~~~~~~l 72 (132)
T 3lte_A 4 KQSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKL-----------STFEPAIMTLDLSMPKLDGLDVIRSL 72 (132)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HHTCCSEEEEESCBTTBCHHHHHHHH
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHH-----------HhcCCCEEEEecCCCCCCHHHHHHHH
Confidence 3468999999999999999999999999999999999999998 56689999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
|+..+ ...++||++++.... ...++++.|+++||.|
T Consensus 73 ~~~~~-------------------------------------------~~~~~ii~~~~~~~~-~~~~~~~~g~~~~l~k 108 (132)
T 3lte_A 73 RQNKV-------------------------------------------ANQPKILVVSGLDKA-KLQQAVTEGADDYLEK 108 (132)
T ss_dssp HTTTC-------------------------------------------SSCCEEEEECCSCSH-HHHHHHHHTCCEEECS
T ss_pred HhcCc-------------------------------------------cCCCeEEEEeCCChH-HHHHHHHhChHHHhhC
Confidence 97542 114566666665554 7889999999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 023816 187 PVKLSDVKRIKDYLTR 202 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~~ 202 (276)
|++.++|...+.....
T Consensus 109 P~~~~~l~~~i~~~~~ 124 (132)
T 3lte_A 109 PFDNDALLDRIHDLVN 124 (132)
T ss_dssp SCCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcC
Confidence 9999999766665543
No 71
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.84 E-value=6.9e-21 Score=149.55 Aligned_cols=122 Identities=23% Similarity=0.335 Sum_probs=98.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
.+.+||||||++..+..++.+|+.. +.+..+.++.+|++.+ ....||+||+|+.||+++|++++++||
T Consensus 2 ~~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~-----------~~~~~dlvi~D~~l~~~~g~~~~~~l~ 69 (140)
T 3n53_A 2 SLKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQI-----------DHHHPDLVILDMDIIGENSPNLCLKLK 69 (140)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHH-----------HHHCCSEEEEETTC------CHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHH-----------hcCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 4679999999999999999999988 9999999999999998 556799999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
+.. ....+|||++|+....+...++++.|+++||.||
T Consensus 70 ~~~-------------------------------------------~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP 106 (140)
T 3n53_A 70 RSK-------------------------------------------GLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKP 106 (140)
T ss_dssp TST-------------------------------------------TCTTCCEEEEECC----CTTTTTTCCCSEEEESS
T ss_pred cCc-------------------------------------------ccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCC
Confidence 754 1127999999999988888999999999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q 023816 188 VKLSDVKRIKDYLTRDV 204 (276)
Q Consensus 188 v~~~~L~~~~~~l~~~~ 204 (276)
++.++|...+..+.+..
T Consensus 107 ~~~~~l~~~i~~~~~~~ 123 (140)
T 3n53_A 107 FNRNDLLSRIEIHLRTQ 123 (140)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhH
Confidence 99999977777665543
No 72
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.84 E-value=1.4e-20 Score=142.67 Aligned_cols=113 Identities=21% Similarity=0.368 Sum_probs=101.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
.+||||||++..++.++..|+..|+.+..+.++.+|++.+ ....||+||+|+.||+++|++++++||+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~-----------~~~~~dlvl~D~~l~~~~g~~~~~~l~~~ 70 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKF-----------FSGNYDLVILDIEMPGISGLEVAGEIRKK 70 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HHSCCSEEEECSCCSSSCHHHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------hcCCCCEEEEECCCCCCCHHHHHHHHHcc
Confidence 4899999999999999999999999999999999999998 45679999999999999999999999987
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
.| .+|||++|+..... .++++.|+++|+.||++
T Consensus 71 ~~---------------------------------------------~~~ii~~s~~~~~~--~~~~~~g~~~~l~Kp~~ 103 (116)
T 3a10_A 71 KK---------------------------------------------DAKIILLTAYSHYR--SDMSSWAADEYVVKSFN 103 (116)
T ss_dssp CT---------------------------------------------TCCEEEEESCGGGG--GCGGGGGSSEEEECCSS
T ss_pred CC---------------------------------------------CCeEEEEECCcchH--HHHHhccccceEECCCC
Confidence 66 78999999876654 67889999999999999
Q ss_pred HHHHHHHHHHH
Q 023816 190 LSDVKRIKDYL 200 (276)
Q Consensus 190 ~~~L~~~~~~l 200 (276)
.++|...+..+
T Consensus 104 ~~~l~~~i~~~ 114 (116)
T 3a10_A 104 FDELKEKVKKL 114 (116)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99996665543
No 73
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.84 E-value=3.6e-21 Score=178.75 Aligned_cols=117 Identities=28% Similarity=0.485 Sum_probs=103.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
+.+||||||++.+++.++.+|+..||+|..+.++++|++.+ +...||+||+|+.||++||++++++||+
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~-----------~~~~~dlvllD~~mp~~~G~~~~~~lr~ 73 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIF-----------ESEQPDLVICDLRMPQIDGLELIRRIRQ 73 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHH-----------HHSCCSEEEECCCSSSSCTHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHH-----------hhCCCCEEEEcCCCCCCCHHHHHHHHHh
Confidence 67999999999999999999999999999999999999998 5567999999999999999999999998
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
..+ .+|||++|+..+.+...+|++.|++|||.||+
T Consensus 74 ~~~---------------------------------------------~~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~ 108 (394)
T 3eq2_A 74 TAS---------------------------------------------ETPIIVLSGAGVMSDAVEALRLGAADYLIKPL 108 (394)
T ss_dssp TTC---------------------------------------------CCCEEEC---CHHHHHHHHHHHTCSEECCSSC
T ss_pred hCC---------------------------------------------CCcEEEEEcCCCHHHHHHHHhcChhhEEECCC
Confidence 766 79999999999999999999999999999999
Q ss_pred -CHHHHHHHHHHHH
Q 023816 189 -KLSDVKRIKDYLT 201 (276)
Q Consensus 189 -~~~~L~~~~~~l~ 201 (276)
..+.|.+.+..+.
T Consensus 109 ~~~~~l~~~i~~~~ 122 (394)
T 3eq2_A 109 EDLAVLEHSVRRAL 122 (394)
T ss_dssp SCTHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 5777765555443
No 74
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.84 E-value=2.2e-20 Score=148.30 Aligned_cols=118 Identities=23% Similarity=0.295 Sum_probs=100.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHh--hCCCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 30 VHVLAVDDSFVDRKVIERLLT--ISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~--~~g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
++||||||++..++.+...|. ..|+.+. .+.++.+|++.+ ....||+||+|+.||+++|++++++|
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~-----------~~~~~dlvllD~~lp~~~g~~l~~~l 71 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIA-----------LKHPPNVLLTDVRMPRMDGIELVDNI 71 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHH-----------TTSCCSEEEEESCCSSSCHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 689999999999999999997 3688877 899999999998 66789999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
++..| .+|||++|+........++++.|+++||.|
T Consensus 72 ~~~~~---------------------------------------------~~~ii~ls~~~~~~~~~~~~~~ga~~~l~K 106 (141)
T 3cu5_A 72 LKLYP---------------------------------------------DCSVIFMSGYSDKEYLKAAIKFRAIRYVEK 106 (141)
T ss_dssp HHHCT---------------------------------------------TCEEEEECCSTTTCCC------CCCEEECS
T ss_pred HhhCC---------------------------------------------CCcEEEEeCCCcHHHHHHHHhCCccEEEeC
Confidence 98766 799999999988888889999999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 023816 187 PVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~~~ 203 (276)
|++.++|...+..+.+.
T Consensus 107 P~~~~~L~~~i~~~~~~ 123 (141)
T 3cu5_A 107 PIDPSEIMDALKQSIQT 123 (141)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999997776665543
No 75
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.84 E-value=2.1e-20 Score=144.41 Aligned_cols=118 Identities=18% Similarity=0.229 Sum_probs=105.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
.+.+||||||++..++.++.+|+..++.+..+.+++++++.+ ... ||+||+|+.||+++|++++++||
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-----------~~~-~dlvi~D~~l~~~~g~~~~~~l~ 69 (135)
T 3eqz_A 2 SLNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLS-----------LNK-QDIIILDLMMPDMDGIEVIRHLA 69 (135)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSC-----------CCT-TEEEEEECCTTTTHHHHHHHHHH
T ss_pred CcceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhh-----------ccC-CCEEEEeCCCCCCCHHHHHHHHH
Confidence 468999999999999999999998888999999999999877 555 99999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCH-----HHHHHHHhcCCCe
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENIL-----ARIDRCLEDGAED 182 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~-----~~~~~al~~Ga~d 182 (276)
+..+ .+|||++|+.... ....++++.|+++
T Consensus 70 ~~~~---------------------------------------------~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~ 104 (135)
T 3eqz_A 70 EHKS---------------------------------------------PASLILISGYDSGVLHSAETLALSCGLNVIN 104 (135)
T ss_dssp HTTC---------------------------------------------CCEEEEEESSCHHHHHHHHHHHHHTTCEEEE
T ss_pred hCCC---------------------------------------------CCCEEEEEeccchhHHHHHHHHHHcCCCcce
Confidence 8766 7999999998875 6677899999999
Q ss_pred EEeCCCCHHHHHHHHHHHHH
Q 023816 183 FIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 183 ~l~KPv~~~~L~~~~~~l~~ 202 (276)
||.||++.++|...+..+..
T Consensus 105 ~l~KP~~~~~l~~~l~~~~~ 124 (135)
T 3eqz_A 105 TFTKPINTEVLTCFLTSLSN 124 (135)
T ss_dssp EEESSCCHHHHHHHHHHHSC
T ss_pred eeCCCCCHHHHHHHHHHHHh
Confidence 99999999999777766553
No 76
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.84 E-value=5.3e-20 Score=144.68 Aligned_cols=118 Identities=24% Similarity=0.312 Sum_probs=104.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
.+||||||++..+..++.+|+.. |.+..+.++.+|++.+ ....||+||+|+.||+++|++++++|++.
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~-----------~~~~~dlvl~D~~lp~~~g~~~~~~l~~~ 69 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAIL-----------EEEWVQVIICDQRMPGRTGVDFLTEVRER 69 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHH-----------HHSCEEEEEEESCCSSSCHHHHHHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHH-----------hcCCCCEEEEeCCCCCCcHHHHHHHHHHh
Confidence 37999999999999999999875 9999999999999998 45679999999999999999999999987
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhc-CCCeEEeCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLED-GAEDFIVKPV 188 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~-Ga~d~l~KPv 188 (276)
.| .+|+|++|+..+.....++++. |+++||.||+
T Consensus 70 ~~---------------------------------------------~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~ 104 (139)
T 2jk1_A 70 WP---------------------------------------------ETVRIIITGYTDSASMMAAINDAGIHQFLTKPW 104 (139)
T ss_dssp CT---------------------------------------------TSEEEEEESCTTCHHHHHHHHHTTCCEEEESSC
T ss_pred CC---------------------------------------------CCcEEEEeCCCChHHHHHHHHhhchhhhccCCC
Confidence 66 7899999999888888888875 6999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 023816 189 KLSDVKRIKDYLTRDV 204 (276)
Q Consensus 189 ~~~~L~~~~~~l~~~~ 204 (276)
+.++|...+..+.+..
T Consensus 105 ~~~~L~~~i~~~~~~~ 120 (139)
T 2jk1_A 105 HPEQLLSSARNAARMF 120 (139)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999977776655443
No 77
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.84 E-value=4.2e-20 Score=156.19 Aligned_cols=119 Identities=24% Similarity=0.345 Sum_probs=109.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
+++||||||++..+..++.+|+..|++|..+.++.+|++.+ ....||+||+|+.||+++|++++++||+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~-----------~~~~~dlvllD~~l~~~~g~~~~~~lr~ 70 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMA-----------LNEPFDVVILDIMLPVHDGWEILKSMRE 70 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HHSCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 47999999999999999999999999999999999999988 5567999999999999999999999998
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
..| .+|||++|+........++++.|+++|+.||+
T Consensus 71 ~~~---------------------------------------------~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~ 105 (225)
T 1kgs_A 71 SGV---------------------------------------------NTPVLMLTALSDVEYRVKGLNMGADDYLPKPF 105 (225)
T ss_dssp TTC---------------------------------------------CCCEEEEESSCHHHHHHHTCCCCCSEEEESSC
T ss_pred cCC---------------------------------------------CCCEEEEeCCCCHHHHHHHHhCCccEEEeCCC
Confidence 666 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 023816 189 KLSDVKRIKDYLTRD 203 (276)
Q Consensus 189 ~~~~L~~~~~~l~~~ 203 (276)
+.++|...+..+.+.
T Consensus 106 ~~~~l~~~i~~~~~~ 120 (225)
T 1kgs_A 106 DLRELIARVRALIRR 120 (225)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999997777766554
No 78
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.84 E-value=1.3e-20 Score=177.30 Aligned_cols=118 Identities=19% Similarity=0.282 Sum_probs=109.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhC
Q 023816 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTT 110 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~ 110 (276)
+||||||++..+..++.+|+..||.+..+.++++|++.+ ....||+||+|+.||+|||++++++||+..
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l-----------~~~~~DlvllDi~mP~~dG~ell~~lr~~~ 70 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKI-----------KELFFPVIVLDVWMPDGDGVNFIDFIKENS 70 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HHBCCSEEEEESEETTEETTTHHHHHHHHC
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------HhCCCCEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 799999999999999999999999999999999999999 566899999999999999999999999877
Q ss_pred CCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCH
Q 023816 111 PFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL 190 (276)
Q Consensus 111 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~ 190 (276)
| .+|||++|++.+.+...+|++.||+|||.||++.
T Consensus 71 ~---------------------------------------------~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~ 105 (368)
T 3dzd_A 71 P---------------------------------------------DSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSV 105 (368)
T ss_dssp T---------------------------------------------TCEEEEEECSSCCHHHHHHHHHTCCEEEESSCCH
T ss_pred C---------------------------------------------CCeEEEEeCCCCHHHHHHHHhcCcceEEeCCCCH
Confidence 7 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 023816 191 SDVKRIKDYLTRDV 204 (276)
Q Consensus 191 ~~L~~~~~~l~~~~ 204 (276)
++|...+..+....
T Consensus 106 ~~L~~~i~~~l~~~ 119 (368)
T 3dzd_A 106 ERFLLTIKHAFEEY 119 (368)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99977777665543
No 79
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.84 E-value=2.2e-20 Score=163.98 Aligned_cols=121 Identities=21% Similarity=0.354 Sum_probs=109.0
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 26 ~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
.+.+++||||||++..+..++.+|+..|+.|..+.++.+|++.+ ....||+||+|+.||+++|++++++
T Consensus 34 ~m~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~DlvllD~~lp~~~G~~l~~~ 102 (249)
T 3q9s_A 34 RMNEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKA-----------REDHPDLILLDLGLPDFDGGDVVQR 102 (249)
T ss_dssp ---CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHH-----------HHSCCSEEEEECCSCHHHHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------hcCCCCEEEEcCCCCCCCHHHHHHH
Confidence 35568999999999999999999999999999999999999998 5567999999999999999999999
Q ss_pred HHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 106 IKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 106 Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
||+ .| .+|||++|+..+.+...+|++.||++||.
T Consensus 103 lr~-~~---------------------------------------------~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~ 136 (249)
T 3q9s_A 103 LRK-NS---------------------------------------------ALPIIVLTARDTVEEKVRLLGLGADDYLI 136 (249)
T ss_dssp HHT-TC---------------------------------------------CCCEEEEESCCSHHHHHHHHHHTCSEEEE
T ss_pred HHc-CC---------------------------------------------CCCEEEEECCCCHHHHHHHHHCCCcEEEE
Confidence 996 44 78999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 023816 186 KPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 186 KPv~~~~L~~~~~~l~~~ 203 (276)
||++.++|...+..+.+.
T Consensus 137 Kp~~~~~L~~~i~~~l~~ 154 (249)
T 3q9s_A 137 KPFHPDELLARVKVQLRQ 154 (249)
T ss_dssp SSCCHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999997777766543
No 80
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.83 E-value=8.1e-20 Score=145.79 Aligned_cols=120 Identities=18% Similarity=0.282 Sum_probs=109.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTI-SSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~-~g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
.+++||||||++..++.++.+|+. .|+.+. .+.++.+|++.+ ....||+||+|+.||+++|++++++
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l-----------~~~~~dlii~D~~l~~~~g~~~~~~ 72 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLY-----------RETTPDIVVMDLTLPGPGGIEATRH 72 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHH-----------HTTCCSEEEECSCCSSSCHHHHHHH
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHH-----------hcCCCCEEEEecCCCCCCHHHHHHH
Confidence 468999999999999999999998 799998 799999999998 5667999999999999999999999
Q ss_pred HHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 106 IKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 106 Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
|++..+ .+|||++|+........++++.|+++||.
T Consensus 73 l~~~~~---------------------------------------------~~~ii~ls~~~~~~~~~~~~~~g~~~~l~ 107 (153)
T 3cz5_A 73 IRQWDG---------------------------------------------AARILIFTMHQGSAFALKAFEAGASGYVT 107 (153)
T ss_dssp HHHHCT---------------------------------------------TCCEEEEESCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHhCC---------------------------------------------CCeEEEEECCCCHHHHHHHHHCCCcEEEe
Confidence 998766 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 023816 186 KPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 186 KPv~~~~L~~~~~~l~~~ 203 (276)
||++.++|...+..+.+.
T Consensus 108 kp~~~~~L~~~i~~~~~~ 125 (153)
T 3cz5_A 108 KSSDPAELVQAIEAILAG 125 (153)
T ss_dssp TTSCTTHHHHHHHHHTTT
T ss_pred cCCCHHHHHHHHHHHHhC
Confidence 999999997777666543
No 81
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.83 E-value=3.5e-20 Score=157.41 Aligned_cols=121 Identities=27% Similarity=0.390 Sum_probs=109.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
+..++||||||++..+..+..+|+..||+|..+.++.+|++.+ ....||+||+|+.||+++|+++++.|
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~-----------~~~~~dlvllD~~l~~~~g~~~~~~l 73 (233)
T 1ys7_A 5 VTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSA-----------TENRPDAIVLDINMPVLDGVSVVTAL 73 (233)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HHSCCSEEEEESSCSSSCHHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHH-----------HhCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 3467999999999999999999999999999999999999998 55679999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
++..| .+|||++|+........++++.||++||.|
T Consensus 74 ~~~~~---------------------------------------------~~~ii~lt~~~~~~~~~~~~~~ga~~~l~K 108 (233)
T 1ys7_A 74 RAMDN---------------------------------------------DVPVCVLSARSSVDDRVAGLEAGADDYLVK 108 (233)
T ss_dssp HHTTC---------------------------------------------CCCEEEEECCCTTTCCCTTTTTTCSEEEES
T ss_pred HhcCC---------------------------------------------CCCEEEEEcCCCHHHHHHHHHcCCCEEEeC
Confidence 98666 799999999999888889999999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 023816 187 PVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~~~ 203 (276)
|++.++|...+..+.+.
T Consensus 109 p~~~~~L~~~i~~~~~~ 125 (233)
T 1ys7_A 109 PFVLAELVARVKALLRR 125 (233)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999997777766554
No 82
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.83 E-value=1.3e-19 Score=142.06 Aligned_cols=124 Identities=22% Similarity=0.361 Sum_probs=105.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSC--KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~--~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
.+++||||||++..++.++..|+..|+ .+..+.++.+|++.+...... ....||+||+|+.||+++|++++++
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~-----~~~~~dlii~D~~l~~~~g~~~~~~ 80 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKE-----NKIHPKLILLDINIPKMNGIEFLKE 80 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTC-----CCCCCSEEEEETTCTTSCHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccc-----cCCCCCEEEEecCCCCCCHHHHHHH
Confidence 467899999999999999999999998 999999999999998311000 0267999999999999999999999
Q ss_pred HHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 106 IKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 106 Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
||+.. ....+|||++|+....+...++++.|+++||.
T Consensus 81 l~~~~-------------------------------------------~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~ 117 (143)
T 2qvg_A 81 LRDDS-------------------------------------------SFTDIEVFVLTAAYTSKDKLAFESLNIRGHLI 117 (143)
T ss_dssp HTTSG-------------------------------------------GGTTCEEEEEESCCCHHHHHHHTTTTCCEEEE
T ss_pred HHcCc-------------------------------------------cccCCcEEEEeCCCCHHHHHHHHhcCCCeEEE
Confidence 99643 11279999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH
Q 023816 186 KPVKLSDVKRIKDY 199 (276)
Q Consensus 186 KPv~~~~L~~~~~~ 199 (276)
||++.++|.+.+..
T Consensus 118 kP~~~~~L~~~~~~ 131 (143)
T 2qvg_A 118 KPLDYGEAIKLFWI 131 (143)
T ss_dssp SSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999666443
No 83
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.83 E-value=6e-20 Score=139.64 Aligned_cols=118 Identities=19% Similarity=0.315 Sum_probs=104.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCC-CCCHHHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-GMTGYELLKKIK 107 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp-~~~G~ell~~Ir 107 (276)
.++||||||++..++.++..|+..||++..+.++.+|++.+ ....||+||+|+.|| +++|++++++||
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~-----------~~~~~dlvi~d~~~~~~~~g~~~~~~l~ 73 (127)
T 2gkg_A 5 SKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQI-----------RRDRPDLVVLAVDLSAGQNGYLICGKLK 73 (127)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHH-----------HHHCCSEEEEESBCGGGCBHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCCHHHHHHHHh
Confidence 46999999999999999999999999999999999999998 455799999999999 999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
+.. ....+|||++ +........++++.|+++|+.||
T Consensus 74 ~~~-------------------------------------------~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp 109 (127)
T 2gkg_A 74 KDD-------------------------------------------DLKNVPIVII-GNPDGFAQHRKLKAHADEYVAKP 109 (127)
T ss_dssp HST-------------------------------------------TTTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESS
T ss_pred cCc-------------------------------------------cccCCCEEEE-ecCCchhHHHHHHhCcchheeCC
Confidence 751 1127899999 88888888999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 023816 188 VKLSDVKRIKDYLT 201 (276)
Q Consensus 188 v~~~~L~~~~~~l~ 201 (276)
++.++|...+..+.
T Consensus 110 ~~~~~l~~~i~~~~ 123 (127)
T 2gkg_A 110 VDADQLVERAGALI 123 (127)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999977766554
No 84
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.83 E-value=7.2e-20 Score=153.76 Aligned_cols=116 Identities=22% Similarity=0.363 Sum_probs=105.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
+.+||||||++..+..+..+|+..||++. .+.++.+|++.+ ....||+||+|+.||+++|++++++|+
T Consensus 13 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~-----------~~~~~dlvi~D~~~p~~~g~~~~~~l~ 81 (205)
T 1s8n_A 13 PRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELA-----------ELHKPDLVIMDVKMPRRDGIDAASEIA 81 (205)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-----------HHHCCSEEEEESSCSSSCHHHHHHHHH
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------hhcCCCEEEEeCCCCCCChHHHHHHHH
Confidence 46999999999999999999999999998 899999999998 456799999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
+..+ .|||++|++.......++++.|+++||.||
T Consensus 82 ~~~~----------------------------------------------~pii~lt~~~~~~~~~~~~~~ga~~~l~KP 115 (205)
T 1s8n_A 82 SKRI----------------------------------------------APIVVLTAFSQRDLVERARDAGAMAYLVKP 115 (205)
T ss_dssp HTTC----------------------------------------------SCEEEEEEGGGHHHHHTTGGGSCEEEEEES
T ss_pred hcCC----------------------------------------------CCEEEEecCCCHHHHHHHHhcCCcEEEeCC
Confidence 7443 599999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 023816 188 VKLSDVKRIKDYLT 201 (276)
Q Consensus 188 v~~~~L~~~~~~l~ 201 (276)
++.++|...+..+.
T Consensus 116 ~~~~~L~~~i~~~~ 129 (205)
T 1s8n_A 116 FSISDLIPAIELAV 129 (205)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999966665544
No 85
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.82 E-value=7.9e-20 Score=145.62 Aligned_cols=120 Identities=28% Similarity=0.339 Sum_probs=98.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhC-CC-EEEEECCHHHHHHHhcccccccccCCCC-CceeEEEEecCCCCCCHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTIS-SC-KVTAVDSGRRALQFLGLDEEQSINGFDG-LKVDLIITDYCMPGMTGYELLK 104 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~-g~-~v~~a~~g~~al~~l~~~~~~~~~~~~~-~~~DlIL~D~~mp~~~G~ell~ 104 (276)
..++||||||++..+..++..|+.. |+ .+..+.++.+|++.+ .. ..||+||+|+.||+++|+++++
T Consensus 2 ~~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l-----------~~~~~~dlvi~d~~l~~~~g~~~~~ 70 (154)
T 2qsj_A 2 SLTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFL-----------EADNTVDLILLDVNLPDAEAIDGLV 70 (154)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHH-----------HTTCCCSEEEECC------CHHHHH
T ss_pred CccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHH-----------hccCCCCEEEEeCCCCCCchHHHHH
Confidence 4689999999999999999999987 88 688899999999999 55 6899999999999999999999
Q ss_pred HHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 105 KIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 105 ~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
+|++..| .+|||++|+........++++.|+++|+
T Consensus 71 ~l~~~~~---------------------------------------------~~~ii~ls~~~~~~~~~~~~~~g~~~~l 105 (154)
T 2qsj_A 71 RLKRFDP---------------------------------------------SNAVALISGETDHELIRAALEAGADGFI 105 (154)
T ss_dssp HHHHHCT---------------------------------------------TSEEEEC-----CHHHHHHHHTTCCBBC
T ss_pred HHHHhCC---------------------------------------------CCeEEEEeCCCCHHHHHHHHHccCCEEE
Confidence 9998776 7999999999988899999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHh
Q 023816 185 VKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 185 ~KPv~~~~L~~~~~~l~~~ 203 (276)
.||++.++|...+..+.+.
T Consensus 106 ~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 106 PKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp CTTSCHHHHHHHHHHHHTT
T ss_pred eCCCCHHHHHHHHHHHHcC
Confidence 9999999998777766654
No 86
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.82 E-value=3.3e-19 Score=137.53 Aligned_cols=119 Identities=24% Similarity=0.316 Sum_probs=106.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCC-ceeEEEEecCCCC-CCHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGL-KVDLIITDYCMPG-MTGYELLK 104 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~-~~DlIL~D~~mp~-~~G~ell~ 104 (276)
+.+++||||||++..++.++..|+..||++..+.++.+|++.+ ... .||+||+|+.||+ ++|+++++
T Consensus 3 m~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~~dlvi~d~~l~~~~~g~~~~~ 71 (132)
T 2rdm_A 3 LEAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEML-----------KSGAAIDGVVTDIRFCQPPDGWQVAR 71 (132)
T ss_dssp CSSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HTTCCCCEEEEESCCSSSSCHHHHHH
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------HcCCCCCEEEEeeeCCCCCCHHHHHH
Confidence 4578999999999999999999999999999999999999998 555 7999999999997 99999999
Q ss_pred HHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 105 KIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 105 ~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
+|++..+ .+|||++|+........++++.| +|+
T Consensus 72 ~l~~~~~---------------------------------------------~~~ii~~s~~~~~~~~~~~~~~~--~~l 104 (132)
T 2rdm_A 72 VAREIDP---------------------------------------------NMPIVYISGHAALEWASNGVPDS--IIL 104 (132)
T ss_dssp HHHHHCT---------------------------------------------TCCEEEEESSCCTTHHHHSCTTC--EEE
T ss_pred HHHhcCC---------------------------------------------CCCEEEEeCCccHHHHHhhcCCc--ceE
Confidence 9998766 79999999999888888888776 899
Q ss_pred eCCCCHHHHHHHHHHHHHh
Q 023816 185 VKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 185 ~KPv~~~~L~~~~~~l~~~ 203 (276)
.||++.++|...++.+.+.
T Consensus 105 ~kP~~~~~l~~~i~~~~~~ 123 (132)
T 2rdm_A 105 EKPFTSAQLITAVSQLLNA 123 (132)
T ss_dssp ESSCCHHHHHHHHHHHHHT
T ss_pred eCCCCHHHHHHHHHHHHhc
Confidence 9999999997777666543
No 87
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.82 E-value=9.2e-20 Score=172.12 Aligned_cols=119 Identities=25% Similarity=0.479 Sum_probs=109.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
++||||||++..+..++.+|+..||+|..+.++.+|++.+ ....||+||+|+.||+++|++++++|++.
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l-----------~~~~~DlvllD~~mp~~dG~ell~~lr~~ 69 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLL-----------SEKHFNVVLLDLLLPDVNGLEILKWIKER 69 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHH-----------HHSCCSEEEEESBCSSSBHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------HhCCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 4799999999999999999999999999999999999998 55679999999999999999999999987
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
.| .+|||++|++...+...+|++.||+|||.||++
T Consensus 70 ~~---------------------------------------------~~pvIvlT~~~~~~~~~~a~~~Ga~dyl~KP~~ 104 (387)
T 1ny5_A 70 SP---------------------------------------------ETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCM 104 (387)
T ss_dssp CT---------------------------------------------TSEEEEEEETTCHHHHHHHHTTTCCEEEEESCC
T ss_pred CC---------------------------------------------CCcEEEEeCCCCHHHHHHHHhcCceEEecCCCC
Confidence 77 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 023816 190 LSDVKRIKDYLTRDV 204 (276)
Q Consensus 190 ~~~L~~~~~~l~~~~ 204 (276)
.++|...+..+.+..
T Consensus 105 ~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 105 LEEIELTINKAIEHR 119 (387)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999977776665443
No 88
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.81 E-value=7.7e-20 Score=144.68 Aligned_cols=114 Identities=29% Similarity=0.374 Sum_probs=95.1
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhcccccccccCCCCC-ceeEEEEecCCCCCCH
Q 023816 23 SPSDTEEVHVLAVDDSFVDRKVIERLLTIS-SCKVT-AVDSGRRALQFLGLDEEQSINGFDGL-KVDLIITDYCMPGMTG 99 (276)
Q Consensus 23 ~~~~~~~~~VLIVdD~~~~~~~L~~~L~~~-g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~-~~DlIL~D~~mp~~~G 99 (276)
++...++.+||||||++..+..++.+|+.. |+.++ .+.++++|++.+ ... .||+||+|+.||+++|
T Consensus 7 ~~~~~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l-----------~~~~~~dlvilD~~l~~~~g 75 (145)
T 3kyj_B 7 HHHHGSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKL-----------AAQPNVDLILLDIEMPVMDG 75 (145)
T ss_dssp ----CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHH-----------HHCTTCCEEEECTTSCCCTT
T ss_pred CCCCCCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHH-----------hcCCCCCEEEEeCCCCCCCH
Confidence 345566889999999999999999999988 88865 799999999998 445 7999999999999999
Q ss_pred HHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEec--CCCHHHHHHHHh
Q 023816 100 YELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSS--ENILARIDRCLE 177 (276)
Q Consensus 100 ~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~--~~~~~~~~~al~ 177 (276)
++++++||+.. +.|++++++ ........++++
T Consensus 76 ~~~~~~lr~~~----------------------------------------------~~~iiil~~~~~~~~~~~~~~~~ 109 (145)
T 3kyj_B 76 MEFLRHAKLKT----------------------------------------------RAKICMLSSVAVSGSPHAARARE 109 (145)
T ss_dssp CHHHHHHHHHC----------------------------------------------CCEEC-CBSSCSTTSSHHHHHHH
T ss_pred HHHHHHHHhcC----------------------------------------------CCCeEEEEEeccCChHHHHHHHh
Confidence 99999999754 378888887 555667889999
Q ss_pred cCCCeEEeCCCCHHHH
Q 023816 178 DGAEDFIVKPVKLSDV 193 (276)
Q Consensus 178 ~Ga~d~l~KPv~~~~L 193 (276)
.|+++||.||++..+|
T Consensus 110 ~ga~~~l~KP~~~~~l 125 (145)
T 3kyj_B 110 LGADGVVAKPSGTVSH 125 (145)
T ss_dssp TTCSCCCBCCCSCC--
T ss_pred CCCCEEEeCCCCHHHH
Confidence 9999999999996665
No 89
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.81 E-value=3.8e-20 Score=158.28 Aligned_cols=122 Identities=10% Similarity=0.077 Sum_probs=105.8
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHh-hCCCEEEE-ECCHHHHHHH-hcccccccccCCCCCceeEEEEecCCCCCCHHHH
Q 023816 26 DTEEVHVLAVDDSFVDRKVIERLLT-ISSCKVTA-VDSGRRALQF-LGLDEEQSINGFDGLKVDLIITDYCMPGMTGYEL 102 (276)
Q Consensus 26 ~~~~~~VLIVdD~~~~~~~L~~~L~-~~g~~v~~-a~~g~~al~~-l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~el 102 (276)
...+++||||||++..+..++.+|+ ..|+.+.. +.++.+++.. + ....||+||+|+.||+++|+++
T Consensus 4 ~~~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~-----------~~~~~dlvllD~~mp~~~G~~~ 72 (225)
T 3klo_A 4 DENKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKP-----------ESRSIQMLVIDYSRISDDVLTD 72 (225)
T ss_dssp CCSSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCS-----------GGGGCCEEEEEGGGCCHHHHHH
T ss_pred CCCceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHh-----------hccCCCEEEEeCCCCCCCHHHH
Confidence 3457899999999999999999998 56898865 4566666654 4 4567999999999999999999
Q ss_pred HHHHHh-hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCC
Q 023816 103 LKKIKV-TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAE 181 (276)
Q Consensus 103 l~~Ir~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~ 181 (276)
+++||+ ..| .+|||++|+..+......+++.||+
T Consensus 73 ~~~lr~~~~~---------------------------------------------~~~ii~lt~~~~~~~~~~~~~~Ga~ 107 (225)
T 3klo_A 73 YSSFKHISCP---------------------------------------------DAKEVIINCPQDIEHKLLFKWNNLA 107 (225)
T ss_dssp HHHHHHHHCT---------------------------------------------TCEEEEEEECTTCCHHHHTTSTTEE
T ss_pred HHHHHHhhCC---------------------------------------------CCcEEEEECCcchhHHHHHHHhCCC
Confidence 999998 677 7999999999998899999999999
Q ss_pred eEEeCCCCHHHHHHHHHHHHHh
Q 023816 182 DFIVKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 182 d~l~KPv~~~~L~~~~~~l~~~ 203 (276)
|||.||++.++|...+..+.+.
T Consensus 108 ~~l~Kp~~~~~L~~~i~~~~~~ 129 (225)
T 3klo_A 108 GVFYIDDDMDTLIKGMSKILQD 129 (225)
T ss_dssp EEEETTCCHHHHHHHHHHHHTT
T ss_pred EEEecCCCHHHHHHHHHHHHCC
Confidence 9999999999998777776654
No 90
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.81 E-value=2.8e-19 Score=168.22 Aligned_cols=120 Identities=31% Similarity=0.410 Sum_probs=107.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
.+||||||++..+..++.+|+..|+.|..+.+|.+|++.+ ....||+||+|+.||+++|++++++||+.
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~-----------~~~~~dlvllD~~mp~~~G~~~~~~l~~~ 70 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMA-----------ARDLPDIILLDVMMPGMDGFTVCRKLKDD 70 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HHHCCSEEEEESCCSSSCHHHHHHHHHHS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------hcCCCCEEEEcCCCCCCCHHHHHHHHhcC
Confidence 4799999999999999999999999999999999999998 45579999999999999999999999973
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
. ....+|||++|+..+.....++++.||+|||.||++
T Consensus 71 ~-------------------------------------------~~~~~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~ 107 (459)
T 1w25_A 71 P-------------------------------------------TTRHIPVVLITALDGRGDRIQGLESGASDFLTKPID 107 (459)
T ss_dssp T-------------------------------------------TTTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCC
T ss_pred c-------------------------------------------ccCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCC
Confidence 2 123799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 023816 190 LSDVKRIKDYLTRD 203 (276)
Q Consensus 190 ~~~L~~~~~~l~~~ 203 (276)
.++|...+..+.+.
T Consensus 108 ~~~l~~~i~~~~~~ 121 (459)
T 1w25_A 108 DVMLFARVRSLTRF 121 (459)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99997766665543
No 91
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.81 E-value=6.6e-19 Score=138.28 Aligned_cols=119 Identities=25% Similarity=0.374 Sum_probs=101.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTIS-SCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~-g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
.+++||||||++..++.++..|+.. |+.+. .+.++.+|++.+ ....||+||+|+.||+++|++++++
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l-----------~~~~~dlvi~d~~l~~~~g~~~~~~ 76 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFL-----------QHNKVDAIFLDINIPSLDGVLLAQN 76 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHH-----------HHCCCSEEEECSSCSSSCHHHHHHH
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-----------HhCCCCEEEEecCCCCCCHHHHHHH
Confidence 3689999999999999999999876 88854 799999999998 4567999999999999999999999
Q ss_pred HHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 106 IKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 106 Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
|++..+ ..|||++|+... ...++++.|+++||.
T Consensus 77 l~~~~~---------------------------------------------~~~ii~~s~~~~--~~~~~~~~g~~~~l~ 109 (143)
T 2qv0_A 77 ISQFAH---------------------------------------------KPFIVFITAWKE--HAVEAFELEAFDYIL 109 (143)
T ss_dssp HTTSTT---------------------------------------------CCEEEEEESCCT--THHHHHHTTCSEEEE
T ss_pred HHccCC---------------------------------------------CceEEEEeCCHH--HHHHHHhCCcceEEe
Confidence 997544 678899988743 677899999999999
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q 023816 186 KPVKLSDVKRIKDYLTRDV 204 (276)
Q Consensus 186 KPv~~~~L~~~~~~l~~~~ 204 (276)
||++.++|...+..+.+..
T Consensus 110 KP~~~~~l~~~i~~~~~~~ 128 (143)
T 2qv0_A 110 KPYQESRIINMLQKLTTAW 128 (143)
T ss_dssp SSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999977777665543
No 92
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.81 E-value=1.9e-19 Score=141.60 Aligned_cols=120 Identities=21% Similarity=0.326 Sum_probs=100.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
.++||||||++..+..++.+|+..|+.+..+.++.+|++.+ ....||+||+|+.||+++|++++++|++
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l-----------~~~~~dlvllD~~lp~~~g~~~~~~l~~ 78 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAY-----------QNRQFDVIIMDIQMPVMDGLEAVSEIRN 78 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHH-----------HHSCCSEEEECTTCCSSCHHHHHHHHHH
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 46999999999999999999999999999999999999998 4567999999999999999999999996
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
... ......+||+++|+....... .++|+++||.||+
T Consensus 79 ~~~----------------------------------------~~~~~~~~ii~~s~~~~~~~~---~~~g~~~~l~KP~ 115 (140)
T 3c97_A 79 YER----------------------------------------THNTKRASIIAITADTIDDDR---PGAELDEYVSKPL 115 (140)
T ss_dssp HHH----------------------------------------HHTCCCCCCEEEESSCCSCCC---CCSSCSEEEESSC
T ss_pred hhh----------------------------------------hcCCCceEEEEEeCccchhHH---HhCChhheEeCCC
Confidence 310 001126899999987654433 2789999999999
Q ss_pred CHHHHHHHHHHHHH
Q 023816 189 KLSDVKRIKDYLTR 202 (276)
Q Consensus 189 ~~~~L~~~~~~l~~ 202 (276)
+.++|...+..+..
T Consensus 116 ~~~~L~~~i~~~~~ 129 (140)
T 3c97_A 116 NPNQLRDVVLTCHS 129 (140)
T ss_dssp CHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhC
Confidence 99999777766553
No 93
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.80 E-value=2.1e-19 Score=162.84 Aligned_cols=119 Identities=24% Similarity=0.386 Sum_probs=104.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHh-hCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~-~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
...+||||||++..++.++.+|. ..|++|..+.+|.+|++.+ ....||+||+|+.||++||++++++|
T Consensus 17 ~~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~-----------~~~~~dlvl~D~~mp~~~G~~~~~~l 85 (358)
T 3bre_A 17 GAVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVA-----------NQIKPTVILQDLVMPGVDGLTLLAAY 85 (358)
T ss_dssp -CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHH-----------HHHCCSEEEEESBCSSSBHHHHHHHH
T ss_pred cCceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHH-----------HhCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 35689999999999999999996 4689999999999999998 45579999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
|+.. ....+|||++|+..+.....+|++.|++|||.|
T Consensus 86 ~~~~-------------------------------------------~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~~l~K 122 (358)
T 3bre_A 86 RGNP-------------------------------------------ATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVK 122 (358)
T ss_dssp TTST-------------------------------------------TTTTSCEEEEESSCCHHHHHHHHHTTCSEEEES
T ss_pred hcCc-------------------------------------------ccCCCcEEEEeCCCCHHHHHHHHhcChheEeec
Confidence 9631 123799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 023816 187 PVKLSDVKRIKDYL 200 (276)
Q Consensus 187 Pv~~~~L~~~~~~l 200 (276)
|++.++|...+..+
T Consensus 123 p~~~~~l~~~v~~~ 136 (358)
T 3bre_A 123 LPDAIELVARIRYH 136 (358)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 99999986655544
No 94
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.80 E-value=3.4e-19 Score=151.45 Aligned_cols=118 Identities=25% Similarity=0.384 Sum_probs=107.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
+++||||||++..+..+..+|+..|++|..+.++.+|++.+ ....||+||+|+.||+++|++++++|++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~dlvllD~~l~~~~g~~~~~~l~~ 72 (230)
T 2oqr_A 4 ATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEF-----------DRAGADIVLLDLMLPGMSGTDVCKQLRA 72 (230)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHH-----------HHHCCSEEEEESSCSSSCHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hccCCCEEEEECCCCCCCHHHHHHHHHc
Confidence 37999999999999999999999999999999999999998 4557999999999999999999999997
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
. | .+|||++|+........++++.||++|+.||+
T Consensus 73 ~-~---------------------------------------------~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~ 106 (230)
T 2oqr_A 73 R-S---------------------------------------------SVPVIMVTARDSEIDKVVGLELGADDYVTKPY 106 (230)
T ss_dssp H-C---------------------------------------------SCSEEEEECCHHHHHHHHHHHHCCSCCCCSSC
T ss_pred C-C---------------------------------------------CCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCC
Confidence 4 5 79999999998888899999999999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 023816 189 KLSDVKRIKDYLTRD 203 (276)
Q Consensus 189 ~~~~L~~~~~~l~~~ 203 (276)
+.++|...+..+.+.
T Consensus 107 ~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 107 SARELIARIRAVLRR 121 (230)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhh
Confidence 999997777766543
No 95
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.79 E-value=6.8e-21 Score=144.77 Aligned_cols=119 Identities=30% Similarity=0.457 Sum_probs=107.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
...+||||||++..+..++..|+..|+.+..+.++.++++.+ ....||+||+|+.||+++|++++++|+
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvi~d~~~~~~~g~~~~~~l~ 70 (124)
T 1dc7_A 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAAL-----------ASKTPDVLLSDIRMPGMDGLALLKQIK 70 (124)
T ss_dssp CCCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHS-----------SSCCCSCEEECSCSSHHHHCSTHHHHH
T ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHH-----------hcCCCCEEEEeeecCCCCHHHHHHHHH
Confidence 456899999999999999999999999999999999999998 566899999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
+..| .+|+|++|+........++++.|+++|+.||
T Consensus 71 ~~~~---------------------------------------------~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp 105 (124)
T 1dc7_A 71 QRHP---------------------------------------------MLPVIIMTAHSDLDAAVSAYQQGAFDYLPKP 105 (124)
T ss_dssp HHCT---------------------------------------------TSCCCCBCCSTTSTTTTSSCTTCCCCCBCSS
T ss_pred hhCC---------------------------------------------CCCEEEEecCCCHHHHHHHHhcCcceEeeCC
Confidence 8766 7899999999888888899999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 023816 188 VKLSDVKRIKDYLTR 202 (276)
Q Consensus 188 v~~~~L~~~~~~l~~ 202 (276)
++.++|...+..+.+
T Consensus 106 ~~~~~l~~~i~~~~~ 120 (124)
T 1dc7_A 106 FDIDEAVALVERAIS 120 (124)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999776665543
No 96
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.79 E-value=4.6e-19 Score=166.31 Aligned_cols=120 Identities=21% Similarity=0.315 Sum_probs=105.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhh-CCCEEEEECCHHHHHHHhcccccccccCCCC-CceeEEEEecCCCCCCHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTI-SSCKVTAVDSGRRALQFLGLDEEQSINGFDG-LKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~-~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~-~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
.+++||||||++..++.++.+|+. .|+.|..+.||++|++.+ +. ..||+||+|+.||+|||++++++
T Consensus 2 ~~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l-----------~~~~~~DlvllDi~mP~~dG~ell~~ 70 (400)
T 3sy8_A 2 NDLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAIL-----------ESCGHVDIAICDLQMSGMDGLAFLRH 70 (400)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHH-----------HHHSCEEEEEECSSCSSSCHHHHHHH
T ss_pred CCceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHH-----------hhCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 458999999999999999999997 678999999999999998 44 47999999999999999999999
Q ss_pred HHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCH-----HHHHHHHhcCC
Q 023816 106 IKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENIL-----ARIDRCLEDGA 180 (276)
Q Consensus 106 Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~-----~~~~~al~~Ga 180 (276)
||+..+ .++||++|+.... ....+|++.||
T Consensus 71 l~~~~~---------------------------------------------~~~ii~~s~~~~~~~~~~~~~~~a~~~ga 105 (400)
T 3sy8_A 71 ASLSGK---------------------------------------------VHSVILSSEVDPILRQATISMIECLGLNF 105 (400)
T ss_dssp HHHHTC---------------------------------------------EEEEEESCCCCGGGHHHHHHHHHTTTCEE
T ss_pred HHhcCC---------------------------------------------CceEEEEcCchHHHHHHHHHHHHHcCCee
Confidence 998766 5677777777665 56778999999
Q ss_pred CeEEeCCCCHHHHHHHHHHHHHh
Q 023816 181 EDFIVKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 181 ~d~l~KPv~~~~L~~~~~~l~~~ 203 (276)
++||.||++.++|...+..+.+.
T Consensus 106 ~~yl~KP~~~~~L~~~i~~~~~~ 128 (400)
T 3sy8_A 106 LGDLGKPFSLERITALLTRYNAR 128 (400)
T ss_dssp EEECCSSCCHHHHHHHHHHHHHH
T ss_pred ccCcCCCcCHHHHHHHHHHHHHh
Confidence 99999999999998777766554
No 97
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.79 E-value=2.7e-18 Score=145.28 Aligned_cols=116 Identities=22% Similarity=0.270 Sum_probs=106.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
+++||||||++..+..++.+|+..| .+..+.++.+|++.+ ..||+||+|+.||+++|++++++|++
T Consensus 2 m~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~-------------~~~dlvllD~~lp~~~g~~~~~~lr~ 67 (220)
T 1p2f_A 2 MWKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE-------------EAFHVVVLDVMLPDYSGYEICRMIKE 67 (220)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC-------------SCCSEEEEESBCSSSBHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc-------------CCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 4689999999999999999999989 899999999999854 36999999999999999999999998
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
..| .+|||++|+..+.....++++.|+++||.||+
T Consensus 68 ~~~---------------------------------------------~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~ 102 (220)
T 1p2f_A 68 TRP---------------------------------------------ETWVILLTLLSDDESVLKGFEAGADDYVTKPF 102 (220)
T ss_dssp HCT---------------------------------------------TSEEEEEESCCSHHHHHHHHHHTCSEEEESSC
T ss_pred cCC---------------------------------------------CCcEEEEEcCCCHHHHHHHHHcCCCEEEECCC
Confidence 766 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 023816 189 KLSDVKRIKDYLTRD 203 (276)
Q Consensus 189 ~~~~L~~~~~~l~~~ 203 (276)
+.++|...+..+.+.
T Consensus 103 ~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 103 NPEILLARVKRFLER 117 (220)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcc
Confidence 999997777766554
No 98
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.79 E-value=1.1e-19 Score=155.98 Aligned_cols=119 Identities=23% Similarity=0.294 Sum_probs=107.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCC-CEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISS-CKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g-~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
+++||||||++..++.++.+|+..| +.++ .+.++.+|++.+ ....||+||+|+.||+++|++++++|
T Consensus 1 m~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l-----------~~~~~dlvllD~~lp~~~g~~~~~~l 69 (225)
T 3c3w_A 1 MVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARV-----------PAARPDVAVLDVRLPDGNGIELCRDL 69 (225)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHH-----------HHHCCSEEEECSEETTEEHHHHHHHH
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-----------hhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 3789999999999999999999887 8855 699999999998 45579999999999999999999999
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
|+..| .+|||++|+..+.+...++++.|+++||.|
T Consensus 70 r~~~~---------------------------------------------~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~K 104 (225)
T 3c3w_A 70 LSRMP---------------------------------------------DLRCLILTSYTSDEAMLDAILAGASGYVVK 104 (225)
T ss_dssp HHHCT---------------------------------------------TCEEEEGGGSSSHHHHHHHHHHTCCCHHHH
T ss_pred HHhCC---------------------------------------------CCcEEEEECCCCHHHHHHHHHCCCCEEEEC
Confidence 98777 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 023816 187 PVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 187 Pv~~~~L~~~~~~l~~~ 203 (276)
|++.++|...+..+.+.
T Consensus 105 p~~~~~L~~~i~~~~~~ 121 (225)
T 3c3w_A 105 DIKGMELARAVKDVGAG 121 (225)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC
Confidence 99999997777766554
No 99
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.78 E-value=1e-18 Score=130.24 Aligned_cols=113 Identities=21% Similarity=0.232 Sum_probs=100.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
.+||||||++..++.+...|+..|+++..+.++.++++.+ ....||+||+|+.||+++|+++++.|++.
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l-----------~~~~~dlii~d~~~~~~~~~~~~~~l~~~ 70 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQL-----------DLLQPIVILMAWPPPDQSCLLLLQHLREH 70 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHH-----------HHHCCSEEEEECSTTCCTHHHHHHHHHHT
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHH-----------HhcCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 5899999999999999999999999999999999999998 45579999999999999999999999975
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
.. ...+|||++|+..... ++++.|+++|+.||++
T Consensus 71 ~~-------------------------------------------~~~~~ii~~~~~~~~~---~~~~~g~~~~l~kp~~ 104 (119)
T 2j48_A 71 QA-------------------------------------------DPHPPLVLFLGEPPVD---PLLTAQASAILSKPLD 104 (119)
T ss_dssp CC-------------------------------------------CSSCCCEEEESSCCSS---HHHHHHCSEECSSCST
T ss_pred cc-------------------------------------------cCCCCEEEEeCCCCch---hhhhcCHHHhccCCCC
Confidence 41 1278999999987765 8999999999999999
Q ss_pred HHHHHHHHHH
Q 023816 190 LSDVKRIKDY 199 (276)
Q Consensus 190 ~~~L~~~~~~ 199 (276)
.++|...+..
T Consensus 105 ~~~l~~~l~~ 114 (119)
T 2j48_A 105 PQLLLTTLQG 114 (119)
T ss_dssp THHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9998665543
No 100
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.78 E-value=8.9e-19 Score=137.12 Aligned_cols=116 Identities=22% Similarity=0.284 Sum_probs=99.3
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCC-CceeEEEEecCCCCCCHHHHH
Q 023816 25 SDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDG-LKVDLIITDYCMPGMTGYELL 103 (276)
Q Consensus 25 ~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~-~~~DlIL~D~~mp~~~G~ell 103 (276)
...++.+||||||++..++.++..|+..||++..+.++.+|++.+ .. ..||+||+|+.||+++|++++
T Consensus 11 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l-----------~~~~~~dlvilD~~l~~~~g~~~~ 79 (138)
T 2b4a_A 11 HHMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHR-----------SQLSTCDLLIVSDQLVDLSIFSLL 79 (138)
T ss_dssp ---CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTG-----------GGGGSCSEEEEETTCTTSCHHHHH
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHH-----------HhCCCCCEEEEeCCCCCCCHHHHH
Confidence 456688999999999999999999999999999999999999988 55 679999999999999999999
Q ss_pred HHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEe-cCCCHHHHHHHHhcCCCe
Q 023816 104 KKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMS-SENILARIDRCLEDGAED 182 (276)
Q Consensus 104 ~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls-~~~~~~~~~~al~~Ga~d 182 (276)
++|++..+ .+|||++| +...... .+++ +++
T Consensus 80 ~~l~~~~~---------------------------------------------~~~ii~ls~~~~~~~~-~~~~---~~~ 110 (138)
T 2b4a_A 80 DIVKEQTK---------------------------------------------QPSVLILTTGRHELIE-SSEH---NLS 110 (138)
T ss_dssp HHHTTSSS---------------------------------------------CCEEEEEESCC--CCC-CSSS---CEE
T ss_pred HHHHhhCC---------------------------------------------CCCEEEEECCCCCHHH-HHHH---HHh
Confidence 99997555 79999999 8776665 5666 999
Q ss_pred EEeCCCCHHHHHHHHHHH
Q 023816 183 FIVKPVKLSDVKRIKDYL 200 (276)
Q Consensus 183 ~l~KPv~~~~L~~~~~~l 200 (276)
|+.||++.++|...+..+
T Consensus 111 ~l~KP~~~~~L~~~i~~~ 128 (138)
T 2b4a_A 111 YLQKPFAISELRAAIDYH 128 (138)
T ss_dssp EEESSCCHHHHHHHHHHT
T ss_pred eeeCCCCHHHHHHHHHHH
Confidence 999999999997666544
No 101
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.78 E-value=1.3e-18 Score=149.89 Aligned_cols=117 Identities=24% Similarity=0.440 Sum_probs=105.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
+++||||||++..+..++.+|+..||+|..+.++.+|++.+ ....||+||+|+.||+++|++++++|++
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l-----------~~~~~dlvilD~~l~~~~g~~~~~~lr~ 73 (238)
T 2gwr_A 5 RQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAV-----------RELRPDLVLLDLMLPGMNGIDVCRVLRA 73 (238)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHH-----------HHHCCSEEEEESSCSSSCHHHHHHHHHT
T ss_pred cCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------HhCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 36999999999999999999999999999999999999988 4557999999999999999999999995
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
. + .+|||++|+........++++.||++||.||+
T Consensus 74 ~-~---------------------------------------------~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~ 107 (238)
T 2gwr_A 74 D-S---------------------------------------------GVPIVMLTAKTDTVDVVLGLESGADDYIMKPF 107 (238)
T ss_dssp T-C---------------------------------------------CCCEEEEEETTCCSCHHHHHHTTCCEEEEESC
T ss_pred C-C---------------------------------------------CCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCC
Confidence 2 2 68999999999988899999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 023816 189 KLSDVKRIKDYLTR 202 (276)
Q Consensus 189 ~~~~L~~~~~~l~~ 202 (276)
+.++|...+..+.+
T Consensus 108 ~~~~L~~~i~~~~~ 121 (238)
T 2gwr_A 108 KPKELVARVRARLR 121 (238)
T ss_dssp CHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHh
Confidence 99999777665543
No 102
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.78 E-value=3.4e-18 Score=139.48 Aligned_cols=109 Identities=33% Similarity=0.396 Sum_probs=93.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCC-CE-EEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISS-CK-VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g-~~-v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
.+++||||||++..+..++.+|+..| +. +..+.++.+|++.+ ....||+||+|+.||+++|++++++
T Consensus 24 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l-----------~~~~~dlvilD~~l~~~~g~~l~~~ 92 (164)
T 3t8y_A 24 RVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKA-----------IELKPDVITMDIEMPNLNGIEALKL 92 (164)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHH-----------HHHCCSEEEECSSCSSSCHHHHHHH
T ss_pred CccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHh-----------ccCCCCEEEEeCCCCCCCHHHHHHH
Confidence 46899999999999999999999875 44 44799999999998 4567999999999999999999999
Q ss_pred HHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHH--HHHHHHhcCCCeE
Q 023816 106 IKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILA--RIDRCLEDGAEDF 183 (276)
Q Consensus 106 Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~--~~~~al~~Ga~d~ 183 (276)
||+..+ +|||++|+..... ...++++.|+++|
T Consensus 93 lr~~~~----------------------------------------------~~ii~~s~~~~~~~~~~~~~~~~ga~~~ 126 (164)
T 3t8y_A 93 IMKKAP----------------------------------------------TRVIMVSSLTEEGAAITIEALRNGAVDF 126 (164)
T ss_dssp HHHHSC----------------------------------------------CEEEEEESSCCTTCHHHHHHHHTTCCEE
T ss_pred HHhcCC----------------------------------------------ceEEEEecCCccchHHHHHHHHcCcCEE
Confidence 997543 7999999877644 6779999999999
Q ss_pred EeCCCCHHHH
Q 023816 184 IVKPVKLSDV 193 (276)
Q Consensus 184 l~KPv~~~~L 193 (276)
|.||++.++|
T Consensus 127 l~KP~~~~~l 136 (164)
T 3t8y_A 127 ITKPHGSISL 136 (164)
T ss_dssp EECSSSSSCG
T ss_pred EeCCCCHHHH
Confidence 9999994443
No 103
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.77 E-value=8.9e-18 Score=131.24 Aligned_cols=118 Identities=19% Similarity=0.236 Sum_probs=104.3
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHH
Q 023816 24 PSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELL 103 (276)
Q Consensus 24 ~~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell 103 (276)
+......+||||||++..+..++.+|+..||++..+.++.+|++.+ ....||+|| ||+++|++++
T Consensus 13 ~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l-----------~~~~~dlvi----~~~~~g~~~~ 77 (137)
T 2pln_A 13 LVPRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLM-----------DIRNYDLVM----VSDKNALSFV 77 (137)
T ss_dssp --CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHH-----------HHSCCSEEE----ECSTTHHHHH
T ss_pred ccCCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHH-----------HcCCCCEEE----EcCccHHHHH
Confidence 3455678999999999999999999999999999999999999998 556799999 8999999999
Q ss_pred HHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeE
Q 023816 104 KKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDF 183 (276)
Q Consensus 104 ~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~ 183 (276)
++|++. + ..+|||++|+........++++.|+++|
T Consensus 78 ~~l~~~-~--------------------------------------------~~~~ii~ls~~~~~~~~~~~~~~g~~~~ 112 (137)
T 2pln_A 78 SRIKEK-H--------------------------------------------SSIVVLVSSDNPTSEEEVHAFEQGADDY 112 (137)
T ss_dssp HHHHHH-S--------------------------------------------TTSEEEEEESSCCHHHHHHHHHTTCSEE
T ss_pred HHHHhc-C--------------------------------------------CCccEEEEeCCCCHHHHHHHHHcCCcee
Confidence 999963 2 1589999999999999999999999999
Q ss_pred EeCCC-CHHHHHHHHHHHH
Q 023816 184 IVKPV-KLSDVKRIKDYLT 201 (276)
Q Consensus 184 l~KPv-~~~~L~~~~~~l~ 201 (276)
+.||+ +.++|...+..+.
T Consensus 113 l~kP~~~~~~l~~~i~~~~ 131 (137)
T 2pln_A 113 IAKPYRSIKALVARIEARL 131 (137)
T ss_dssp EESSCSCHHHHHHHHHHHT
T ss_pred eeCCCCCHHHHHHHHHHHH
Confidence 99999 9999977666554
No 104
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.75 E-value=2.8e-18 Score=143.10 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=98.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
..+++||||||++..+..+...|+..||.+..+.++.+|+ ...||+||+|+.||+++|. +++.+
T Consensus 10 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al---------------~~~~dlvl~D~~mp~~~g~-l~~~~ 73 (196)
T 1qo0_D 10 LRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF---------------DVPVDVVFTSIFQNRHHDE-IAALL 73 (196)
T ss_dssp GGGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC---------------SSCCSEEEEECCSSTHHHH-HHHHH
T ss_pred hcCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC---------------CCCCCEEEEeCCCCccchH-HHHHH
Confidence 3467999999999999999999999999999888776543 2369999999999999998 88888
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
+...+ .+|||++|++.+.+...++++.|+++||.|
T Consensus 74 ~~~~~---------------------------------------------~~~ii~lt~~~~~~~~~~a~~~ga~~~l~K 108 (196)
T 1qo0_D 74 AAGTP---------------------------------------------RTTLVALVEYESPAVLSQIIELECHGVITQ 108 (196)
T ss_dssp HHSCT---------------------------------------------TCEEEEEECCCSHHHHHHHHHHTCSEEEES
T ss_pred hccCC---------------------------------------------CCCEEEEEcCCChHHHHHHHHcCCCeeEec
Confidence 86434 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 023816 187 PVKLSDVKRIKDYL 200 (276)
Q Consensus 187 Pv~~~~L~~~~~~l 200 (276)
|++.++|...+..+
T Consensus 109 P~~~~~L~~~l~~~ 122 (196)
T 1qo0_D 109 PLDAHRVLPVLVSA 122 (196)
T ss_dssp SCCGGGHHHHHHHH
T ss_pred CcCHHHHHHHHHHH
Confidence 99999986655543
No 105
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.75 E-value=2.8e-17 Score=139.30 Aligned_cols=114 Identities=20% Similarity=0.259 Sum_probs=103.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
++||||||++..+..+..+|+..||.|..+.++.+|++.+ ....||+|| ||+++|++++++|++.
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l-----------~~~~~dlvi----lp~~~g~~~~~~lr~~ 65 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLM-----------DIRNYDLVM----VSDKNALSFVSRIKEK 65 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHH-----------TTSCCSEEE----ECCTTHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHH-----------hcCCCCEEE----eCCCCHHHHHHHHHhC
Confidence 4799999999999999999999999999999999999999 667899999 9999999999999975
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC-
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV- 188 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv- 188 (276)
+ ..+|||++|+..+.....++++.||++||.||+
T Consensus 66 -~--------------------------------------------~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~ 100 (223)
T 2hqr_A 66 -H--------------------------------------------SSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYR 100 (223)
T ss_dssp -C--------------------------------------------TTSEEEEEESSCCHHHHHHHHHHTCSEEEETTCS
T ss_pred -C--------------------------------------------CCCcEEEEECCCCHHHHHHHHHcCCCEEEECCCC
Confidence 2 168999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 023816 189 KLSDVKRIKDYLTRD 203 (276)
Q Consensus 189 ~~~~L~~~~~~l~~~ 203 (276)
+.++|...+..+.+.
T Consensus 101 ~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 101 SIKALVARIEARLRF 115 (223)
T ss_dssp CTHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHHhcc
Confidence 999997777666543
No 106
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.72 E-value=6.3e-17 Score=151.54 Aligned_cols=105 Identities=30% Similarity=0.428 Sum_probs=93.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhC-CCE-EEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTIS-SCK-VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~-g~~-v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
.+++||||||++..++.++.+|+.. |++ +..+.++.+|++.+ ....||+||+|+.||++||++++++
T Consensus 2 ~~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l-----------~~~~pDlVllDi~mp~~dGlell~~ 70 (349)
T 1a2o_A 2 SKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLI-----------KKFNPDVLTLDVEMPRMDGLDFLEK 70 (349)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHH-----------HHHCCSEEEEECCCSSSCHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH-----------hccCCCEEEEECCCCCCCHHHHHHH
Confidence 4689999999999999999999986 898 55899999999998 4567999999999999999999999
Q ss_pred HHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCH--HHHHHHHhcCCCeE
Q 023816 106 IKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENIL--ARIDRCLEDGAEDF 183 (276)
Q Consensus 106 Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~--~~~~~al~~Ga~d~ 183 (276)
|++.. ++|||++|+.... +...++++.|++||
T Consensus 71 l~~~~----------------------------------------------p~pVIvlS~~~~~~~~~~~~al~~Ga~d~ 104 (349)
T 1a2o_A 71 LMRLR----------------------------------------------PMPVVMVSSLTGKGSEVTLRALELGAIDF 104 (349)
T ss_dssp HHHSS----------------------------------------------CCCEEEEECCTHHHHHHHHHHHHHTCCEE
T ss_pred HHhcC----------------------------------------------CCcEEEEECCCcccHHHHHHHHhCCceEE
Confidence 99743 3899999998775 34789999999999
Q ss_pred EeCCCC
Q 023816 184 IVKPVK 189 (276)
Q Consensus 184 l~KPv~ 189 (276)
|.||++
T Consensus 105 l~KP~~ 110 (349)
T 1a2o_A 105 VTKPQL 110 (349)
T ss_dssp EECSSS
T ss_pred EECCCC
Confidence 999998
No 107
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.71 E-value=3e-17 Score=145.54 Aligned_cols=104 Identities=21% Similarity=0.348 Sum_probs=87.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhh-CCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTI-SSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~-~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
..+||||||++..++.+...|.. .|+.+.+++ +.+++..+ ....||+||+|+.||++||++++++||
T Consensus 4 ~~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~~-~~~~~~~~-----------~~~~~dlvllD~~mP~~~G~~~~~~lr 71 (259)
T 3luf_A 4 KQKILIVEDSMTIRRMLIQAIAQQTGLEIDAFD-TLEGARHC-----------QGDEYVVALVDLTLPDAPSGEAVKVLL 71 (259)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHHCCEEEEES-STGGGTTC-----------CTTTEEEEEEESCBTTBTTSHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCeEEEEeC-hHHHHHHh-----------hcCCCcEEEEeCCCCCCCHHHHHHHHH
Confidence 35899999999999999999975 478886554 44555544 456899999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
+. .+|||++|++...+.+.+|+++||+|||.||
T Consensus 72 ~~-----------------------------------------------~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp 104 (259)
T 3luf_A 72 ER-----------------------------------------------GLPVVILTADISEDKREAWLEAGVLDYVMKD 104 (259)
T ss_dssp HT-----------------------------------------------TCCEEEEECC-CHHHHHHHHHTTCCEEEECS
T ss_pred hC-----------------------------------------------CCCEEEEEccCCHHHHHHHHHCCCcEEEeCC
Confidence 51 4799999999999999999999999999999
Q ss_pred CCHH
Q 023816 188 VKLS 191 (276)
Q Consensus 188 v~~~ 191 (276)
+..+
T Consensus 105 ~~~~ 108 (259)
T 3luf_A 105 SRHS 108 (259)
T ss_dssp SHHH
T ss_pred chhH
Confidence 7543
No 108
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.65 E-value=2.4e-16 Score=160.96 Aligned_cols=118 Identities=21% Similarity=0.292 Sum_probs=105.8
Q ss_pred cEEEEEeCCH-HH-------HHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCC-ceeEEEEecCCCC----
Q 023816 30 VHVLAVDDSF-VD-------RKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGL-KVDLIITDYCMPG---- 96 (276)
Q Consensus 30 ~~VLIVdD~~-~~-------~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~-~~DlIL~D~~mp~---- 96 (276)
++||||||++ .. ++.|...|+..||+|..+.|+++|+..+ +.. .+|+||+|+.||+
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~-----------~~~~~~d~vilDi~lp~~~~~ 69 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAIL-----------SSNEAIDCLMFSYQMEHPDEH 69 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------TTTCCCSEEEEECCCCSHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHH-----------hcCCCCcEEEEeCCCCccccc
Confidence 3899999999 88 9999999999999999999999999999 554 5999999999999
Q ss_pred CCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCC-HHHHHHH
Q 023816 97 MTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENI-LARIDRC 175 (276)
Q Consensus 97 ~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~-~~~~~~a 175 (276)
++|++++++||+..+ .+||+++|+... .++....
T Consensus 70 ~~G~~ll~~iR~~~~---------------------------------------------~iPIi~lTa~~~~~~d~~~~ 104 (755)
T 2vyc_A 70 QNVRQLIGKLHERQQ---------------------------------------------NVPVFLLGDREKALAAMDRD 104 (755)
T ss_dssp HHHHHHHHHHHHHST---------------------------------------------TCCEEEEECHHHHHHTCSHH
T ss_pred ccHHHHHHHHHHhCC---------------------------------------------CCCEEEEecCCcchhhccHh
Confidence 999999999998765 799999999877 7788889
Q ss_pred HhcCCCeEEeCCCCHHH-H-HHHHHHHHHh
Q 023816 176 LEDGAEDFIVKPVKLSD-V-KRIKDYLTRD 203 (276)
Q Consensus 176 l~~Ga~d~l~KPv~~~~-L-~~~~~~l~~~ 203 (276)
+..|++||+.||++..+ | .|+...+.|.
T Consensus 105 l~~gaddyi~kpf~~~efl~~ri~a~~rr~ 134 (755)
T 2vyc_A 105 LLELVDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_dssp HHHHCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred HhhcCCceEeCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999 5 5666666553
No 109
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.22 E-value=2.6e-10 Score=107.06 Aligned_cols=118 Identities=19% Similarity=0.273 Sum_probs=96.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
...+|++|||+...++.+...|.. .+.+....++.+++. . ....||+|++|+.||+|+|+++++.||
T Consensus 151 ~~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~-~-----------~~~~~dlil~D~~mp~~dG~~~~~~ir 217 (459)
T 1w25_A 151 LGGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKI-S-----------AGGPVDLVIVNAAAKNFDGLRFTAALR 217 (459)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHH-H-----------HHSSCSEEEEETTCSSSCHHHHHHHHH
T ss_pred CCCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhh-h-----------ccCCCCEEEEecCCCCCcHHHHHHHHH
Confidence 456899999999999988888865 466777888888753 2 234689999999999999999999999
Q ss_pred hhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 108 VTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 108 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
... ....+|++++|+........++++.|++||+.||
T Consensus 218 ~~~-------------------------------------------~~~~~pii~lt~~~~~~~~~~~l~~Ga~d~~~kp 254 (459)
T 1w25_A 218 SEE-------------------------------------------RTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRP 254 (459)
T ss_dssp TSG-------------------------------------------GGTTCCEEEEECTTCHHHHHHHHHTTCCEEEESS
T ss_pred hCc-------------------------------------------cccCCcEEEEcCCCchHHHHHHHhccccccccCC
Confidence 522 2347899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 023816 188 VKLSDVKRIKDYLT 201 (276)
Q Consensus 188 v~~~~L~~~~~~l~ 201 (276)
+...++...+..+.
T Consensus 255 ~~~~~l~~~v~~~~ 268 (459)
T 1w25_A 255 IDPQELSARVKTQI 268 (459)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99998855444443
No 110
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=99.20 E-value=7.7e-12 Score=105.61 Aligned_cols=87 Identities=28% Similarity=0.431 Sum_probs=70.6
Q ss_pred CEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhh
Q 023816 54 CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFIL 133 (276)
Q Consensus 54 ~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~ 133 (276)
+.|..+.++.+|++.+ +...||+||+|+.||+++|++++++||+..+
T Consensus 6 ~~v~~~~~~~~a~~~~-----------~~~~~dlvl~D~~~p~~~g~~~~~~l~~~~~---------------------- 52 (237)
T 3cwo_X 6 LIVDDATNGREAVEKY-----------KELKPDIVTMDITMPEMNGIDAIKEIMKIDP---------------------- 52 (237)
T ss_dssp EEEECCCSSSTTHHHH-----------HHHCCSCEEEECCSTTSSHHHHHHHHHHHSS----------------------
T ss_pred EEEEECCCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHHHHhCC----------------------
Confidence 4455588999999988 4557999999999999999999999998665
Q ss_pred hccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCC--CCHHHHHHH
Q 023816 134 SICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP--VKLSDVKRI 196 (276)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP--v~~~~L~~~ 196 (276)
..++++++.....+...++++.|+++|+.|| ++..++...
T Consensus 53 -----------------------~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp~~~~~~~l~~~ 94 (237)
T 3cwo_X 53 -----------------------NAKIIVCSAMGQQAMVIEAIKAGAKDFIVNTAAVENPSLITQ 94 (237)
T ss_dssp -----------------------SCCEEEECCSSTHHHHHHHHHTTCCEEEESHHHHHCTHHHHH
T ss_pred -----------------------CCCEEEEECCCCHHHHHHHHHCCHHheEeCCcccChHHHHHH
Confidence 4556666666668889999999999999999 665566433
No 111
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.58 E-value=0.00032 Score=61.19 Aligned_cols=57 Identities=16% Similarity=0.048 Sum_probs=47.2
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCH
Q 023816 25 SDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG 99 (276)
Q Consensus 25 ~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G 99 (276)
..-.+.+||||||+...++.+++.|...|+++..+.+ . ....+|++|+|+.+|...+
T Consensus 7 ~~l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~-------~-----------~~~~~~~ii~d~~~~~~~~ 63 (254)
T 2ayx_A 7 EGLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG-------Q-----------EPTPEDVLITDEVVSKKWQ 63 (254)
T ss_dssp CTTTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS-------C-----------CCCTTCEEEEESSCSCCCC
T ss_pred cccCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC-------C-----------CCCcCcEEEEcCCCccccc
Confidence 3455779999999999999999999999999988764 1 2346899999999987543
No 112
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=97.42 E-value=0.0002 Score=73.42 Aligned_cols=94 Identities=11% Similarity=0.104 Sum_probs=73.7
Q ss_pred HHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchhee
Q 023816 42 RKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIV 121 (276)
Q Consensus 42 ~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~ 121 (276)
.+.|.+.|+..||+|..+.++++|+..+. ....+++||+|+.++ +.+++++||+..+
T Consensus 19 i~~L~~~Le~~g~~V~~a~s~~Da~~~i~----------~~~~i~avIld~d~~---~~~ll~~Ir~~~~---------- 75 (715)
T 3n75_A 19 IRELHRALERLNFQIVYPNDRDDLLKLIE----------NNARLCGVIFDWDKY---NLELCEEISKMNE---------- 75 (715)
T ss_dssp HHHHHHHHHHTTCEEECCSSHHHHHHHHH----------HCTTEEEEEEEHHHH---HHHHHHHHHHHCT----------
T ss_pred HHHHHHHHHHCCcEEEEeCCHHHHHHHHH----------hCCCceEEEEecccc---HHHHHHHHHHhCC----------
Confidence 34566888899999999999999999994 334699999999986 7899999999877
Q ss_pred hhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHH
Q 023816 122 FLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV 193 (276)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L 193 (276)
++||.+++.......+.-....++++|+.+..+..+.
T Consensus 76 -----------------------------------~iPVFl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (715)
T 3n75_A 76 -----------------------------------NLPLYAFANTYSTLDVSLNDLRLQISFFEYALGAAED 112 (715)
T ss_dssp -----------------------------------TCEEEEECCTTCCCCGGGTTSCCEEEEECCCTTCHHH
T ss_pred -----------------------------------CCCEEEEecCCcccccchhhhhccCeEEEeCCCCHHH
Confidence 8999999988543333222245789999998755554
No 113
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=96.12 E-value=0.12 Score=43.05 Aligned_cols=118 Identities=17% Similarity=0.168 Sum_probs=78.6
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC-C-C
Q 023816 28 EEVHVLAV----DDSFVDRKVIERLLTISSCKVTA---VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-M-T 98 (276)
Q Consensus 28 ~~~~VLIV----dD~~~~~~~L~~~L~~~g~~v~~---a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~-~-~ 98 (276)
...+|++. |-...-...+..+|+..||+|.. ....++.++.+ .+.++|+|.+...+.. + .
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa-----------~~~~~diV~lS~~~~~~~~~ 85 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAA-----------VQEDVDVIGVSILNGAHLHL 85 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHH-----------HHTTCSEEEEEESSSCHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HhcCCCEEEEEeechhhHHH
Confidence 35677777 67778888899999999999996 34677777777 5678999999887653 1 2
Q ss_pred HHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhc
Q 023816 99 GYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLED 178 (276)
Q Consensus 99 G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~ 178 (276)
-.++++.||+..+ ++++|+ +-+.....+...+.+.
T Consensus 86 ~~~~i~~L~~~g~--------------------------------------------~~i~v~-vGG~~~~~~~~~l~~~ 120 (161)
T 2yxb_A 86 MKRLMAKLRELGA--------------------------------------------DDIPVV-LGGTIPIPDLEPLRSL 120 (161)
T ss_dssp HHHHHHHHHHTTC--------------------------------------------TTSCEE-EEECCCHHHHHHHHHT
T ss_pred HHHHHHHHHhcCC--------------------------------------------CCCEEE-EeCCCchhcHHHHHHC
Confidence 2346666665321 245544 4555555566667789
Q ss_pred CCCeEEeCCCCHHHHHHHHHHHH
Q 023816 179 GAEDFIVKPVKLSDVKRIKDYLT 201 (276)
Q Consensus 179 Ga~d~l~KPv~~~~L~~~~~~l~ 201 (276)
|++.++..-.+..+....+..+.
T Consensus 121 G~d~v~~~~~~~~~~~~~~~~~~ 143 (161)
T 2yxb_A 121 GIREIFLPGTSLGEIIEKVRKLA 143 (161)
T ss_dssp TCCEEECTTCCHHHHHHHHHHHH
T ss_pred CCcEEECCCCCHHHHHHHHHHHH
Confidence 99887765555555544444333
No 114
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=95.78 E-value=0.021 Score=47.49 Aligned_cols=40 Identities=10% Similarity=0.338 Sum_probs=35.3
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEE------eCCCCHHHHHHH
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFI------VKPVKLSDVKRI 196 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l------~KPv~~~~L~~~ 196 (276)
.+|||++++....++..++++.|+++++ .+|++..++.+.
T Consensus 174 ~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~~~~~~~~~~~ 219 (237)
T 3cwo_X 174 TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEY 219 (237)
T ss_dssp CSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTTSSCHHHHHHH
T ss_pred CCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcCCCCHHHHHHH
Confidence 6899999999999999999999999995 688888887553
No 115
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=94.58 E-value=0.73 Score=37.22 Aligned_cols=107 Identities=17% Similarity=0.195 Sum_probs=79.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
+-+||.|-.+-..--.+++++....|+++...... ++..-|+|+|.|-+-..+ |..
T Consensus 12 ~~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~-----------------~e~~AdlIfCEYlLLPe~-------ifS 67 (121)
T 3q7r_A 12 PKHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYK-----------------QELSADLVVCEYSLLPRE-------IRS 67 (121)
T ss_dssp CEEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCC-----------------CCTTEEEEEEEGGGSCTT-------CCC
T ss_pred CcEEEEEecCchhhHHHHHhcCCcceeEEeccccC-----------------CcccceeEEEeeecChHH-------hcC
Confidence 55789998888888889999988889988765311 456789999999652211 110
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 188 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv 188 (276)
....++.-+|++-.--+.+.+.+.+..||. |+..|+
T Consensus 68 -------------------------------------------~k~~~~~dliVLfD~F~EEa~v~vLd~Ga~-yLlrPI 103 (121)
T 3q7r_A 68 -------------------------------------------PKSLEGSFVLVLLDFFDEETSVDLLDRGFW-YLIRPI 103 (121)
T ss_dssp -------------------------------------------CTTCCSCEEEEEESSCCHHHHHHHHHTTCE-EEESCC
T ss_pred -------------------------------------------CCCCCcccEEEEehhhchHHHHHHHhCCce-eEeccC
Confidence 112235567777777788899999999999 999999
Q ss_pred CHHHHHHHHHHHHHh
Q 023816 189 KLSDVKRIKDYLTRD 203 (276)
Q Consensus 189 ~~~~L~~~~~~l~~~ 203 (276)
+..-+..++....+.
T Consensus 104 T~kvldAvIraFLrq 118 (121)
T 3q7r_A 104 TPRILKSAISLFLSQ 118 (121)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc
Confidence 998887777766654
No 116
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=93.28 E-value=1.2 Score=35.86 Aligned_cols=62 Identities=16% Similarity=0.087 Sum_probs=44.5
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC-C-HHHHHHHHHh
Q 023816 36 DDSFVDRKVIERLLTISSCKVTA---VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM-T-GYELLKKIKV 108 (276)
Q Consensus 36 dD~~~~~~~L~~~L~~~g~~v~~---a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~-~-G~ell~~Ir~ 108 (276)
|-+..-.+.+..+|+..||+|.. ....++.++.+ .+.++|+|.+...+... . --++++.+++
T Consensus 14 d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a-----------~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~ 80 (137)
T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAA-----------IETKADAILVSSLYGQGEIDCKGLRQKCDE 80 (137)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHH-----------HHHTCSEEEEEECSSTHHHHHTTHHHHHHH
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HhcCCCEEEEEecCcCcHHHHHHHHHHHHh
Confidence 44556667788999999999984 55778888877 55689999999877431 1 2246666765
No 117
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=91.31 E-value=1.3 Score=38.79 Aligned_cols=88 Identities=15% Similarity=0.122 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecC------CCCCCHHHHHHHHHhhCC
Q 023816 39 FVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC------MPGMTGYELLKKIKVTTP 111 (276)
Q Consensus 39 ~~~~~~L~~~L~~~g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~------mp~~~G~ell~~Ir~~~p 111 (276)
+...+.+.+.++..|..+.. +.+.+++.+.. +..+|.|.+... .+...++++++++++.
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~------------~~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~-- 180 (229)
T 3q58_A 115 PVDIDSLLTRIRLHGLLAMADCSTVNEGISCH------------QKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA-- 180 (229)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECSSHHHHHHHH------------HTTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT--
T ss_pred hHHHHHHHHHHHHCCCEEEEecCCHHHHHHHH------------hCCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc--
Confidence 33444455555667877665 77877776654 345777753221 2234567888888741
Q ss_pred CCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 112 FNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++|||.-.+-...+++.++++.||+.++.
T Consensus 181 ---------------------------------------------~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (229)
T 3q58_A 181 ---------------------------------------------GCRVIAEGRYNTPALAANAIEHGAWAVTV 209 (229)
T ss_dssp ---------------------------------------------TCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred ---------------------------------------------CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 58999888888899999999999999986
No 118
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=90.93 E-value=1.2 Score=40.92 Aligned_cols=90 Identities=16% Similarity=0.096 Sum_probs=62.5
Q ss_pred eCCHHHHHHHHHHHhhCCCEEE--EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC-----CCHHHHHHHHHh
Q 023816 36 DDSFVDRKVIERLLTISSCKVT--AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-----MTGYELLKKIKV 108 (276)
Q Consensus 36 dD~~~~~~~L~~~L~~~g~~v~--~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~-----~~G~ell~~Ir~ 108 (276)
-|.....+..+ .|.+.||+|. ++++...|-+.. ..+++.| +.+..|. ....++++.|++
T Consensus 119 pD~~~tv~aa~-~L~~~Gf~Vlpy~~dd~~~akrl~------------~~G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e 184 (265)
T 1wv2_A 119 PNVVETLKAAE-QLVKDGFDVMVYTSDDPIIARQLA------------EIGCIAV-MPLAGLIGSGLGICNPYNLRIILE 184 (265)
T ss_dssp BCHHHHHHHHH-HHHTTTCEEEEEECSCHHHHHHHH------------HSCCSEE-EECSSSTTCCCCCSCHHHHHHHHH
T ss_pred cCHHHHHHHHH-HHHHCCCEEEEEeCCCHHHHHHHH------------HhCCCEE-EeCCccCCCCCCcCCHHHHHHHHh
Confidence 34444444443 5567899988 466766665443 3457777 6655542 234788999987
Q ss_pred hCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 109 TTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 109 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
. + .+|||+=-+-..+++...|++.||+..++
T Consensus 185 ~-~---------------------------------------------~vPVI~eGGI~TPsDAa~AmeLGAdgVlV 215 (265)
T 1wv2_A 185 E-A---------------------------------------------KVPVLVDAGVGTASDAAIAMELGCEAVLM 215 (265)
T ss_dssp H-C---------------------------------------------SSCBEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred c-C---------------------------------------------CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3 3 68999877778899999999999999875
No 119
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=89.53 E-value=2.5 Score=37.07 Aligned_cols=88 Identities=19% Similarity=0.098 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecC------CCCCCHHHHHHHHHhhCC
Q 023816 39 FVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC------MPGMTGYELLKKIKVTTP 111 (276)
Q Consensus 39 ~~~~~~L~~~L~~~g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~------mp~~~G~ell~~Ir~~~p 111 (276)
+...+.+.+.++..|..+.. +.+.+++.+.. ...+|.|.+... -+...++++++++++.
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~------------~~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~-- 180 (232)
T 3igs_A 115 PVAVEALLARIHHHHLLTMADCSSVDDGLACQ------------RLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA-- 180 (232)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECCSHHHHHHHH------------HTTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHH------------hCCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc--
Confidence 33444455555667877665 67777776554 335777753221 1233467888888752
Q ss_pred CCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 112 FNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++|||.-.+-...+++.++++.||+.++.
T Consensus 181 ---------------------------------------------~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 181 ---------------------------------------------GCRVIAEGRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp ---------------------------------------------TCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred ---------------------------------------------CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 58999888878899999999999999986
No 120
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=88.20 E-value=1.4 Score=39.24 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=35.3
Q ss_pred CCeEEEEecCCC------HHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 023816 157 EIPVVIMSSENI------LARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 157 ~ipiV~ls~~~~------~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~~ 203 (276)
.+|+++|+-.+. ......|.++|++.++.-.+..+++...++.+.+.
T Consensus 94 ~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~ 146 (262)
T 2ekc_A 94 DIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKY 146 (262)
T ss_dssp TSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHT
T ss_pred CCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHc
Confidence 689999864432 35667899999999999888888877776666543
No 121
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=86.66 E-value=2.4 Score=38.87 Aligned_cols=90 Identities=19% Similarity=0.157 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHhhCCCEEE--EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCH-----HHHHHHHHhh
Q 023816 37 DSFVDRKVIERLLTISSCKVT--AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG-----YELLKKIKVT 109 (276)
Q Consensus 37 D~~~~~~~L~~~L~~~g~~v~--~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G-----~ell~~Ir~~ 109 (276)
|.....+..+ .|.+.||.|. ..+|...|-+.. ...++.| +.+-.|..+| .++++.|++.
T Consensus 109 D~~~tv~aa~-~L~k~Gf~Vlpy~~~D~~~ak~l~------------~~G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~ 174 (268)
T 2htm_A 109 DPLETLKAAE-RLIEEDFLVLPYMGPDLVLAKRLA------------ALGTATV-MPLAAPIGSGWGVRTRALLELFARE 174 (268)
T ss_dssp CHHHHHHHHH-HHHHTTCEECCEECSCHHHHHHHH------------HHTCSCB-EEBSSSTTTCCCSTTHHHHHHHHHT
T ss_pred CHHHHHHHHH-HHHHCCCEEeeccCCCHHHHHHHH------------hcCCCEE-EecCccCcCCcccCCHHHHHHHHHh
Confidence 4444444444 3445799877 345664443332 2356666 7766553333 5678888864
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCC-CeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALRE-IPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+ + +|||+=-+-..+++...|++.||+..++
T Consensus 175 ~~---------------------------------------------~~vPVI~~GGI~tpsDAa~AmeLGAdgVlV 206 (268)
T 2htm_A 175 KA---------------------------------------------SLPPVVVDAGLGLPSHAAEVMELGLDAVLV 206 (268)
T ss_dssp TT---------------------------------------------TSSCBEEESCCCSHHHHHHHHHTTCCEEEE
T ss_pred cC---------------------------------------------CCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 44 6 8999877778899999999999999875
No 122
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=86.48 E-value=1.2 Score=40.28 Aligned_cols=46 Identities=9% Similarity=0.233 Sum_probs=36.2
Q ss_pred CCeEEEEecCCC------HHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENI------LARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 157 ~ipiV~ls~~~~------~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
++|+++|+-.+. .....+|.++|++..|.-....++..+.+..+..
T Consensus 95 ~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~ 146 (267)
T 3vnd_A 95 DMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKA 146 (267)
T ss_dssp TCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHH
T ss_pred CCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHH
Confidence 789999975442 5678899999999999988888877666666654
No 123
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=85.35 E-value=7.3 Score=40.18 Aligned_cols=116 Identities=14% Similarity=0.080 Sum_probs=76.1
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC-C-CH
Q 023816 29 EVHVLAV----DDSFVDRKVIERLLTISSCKVTAV---DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-M-TG 99 (276)
Q Consensus 29 ~~~VLIV----dD~~~~~~~L~~~L~~~g~~v~~a---~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~-~-~G 99 (276)
..+|++. |-+..-.+.+..+|+..||+|... .+.++.++.+ .+.++|+|.+..-|.. + ..
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA-----------~e~~adiVglSsl~~~~~~~~ 664 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQA-----------VEADVHVVGVSSLAGGHLTLV 664 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHH-----------HHTTCSEEEEEECSSCHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH-----------HHcCCCEEEEeeecHhHHHHH
Confidence 4567765 455556667788999999999873 3567888877 5668999998876653 2 23
Q ss_pred HHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcC
Q 023816 100 YELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDG 179 (276)
Q Consensus 100 ~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~G 179 (276)
-++++.|++... ++++ |++-+-.-..+...+.+.|
T Consensus 665 ~~vi~~L~~~G~--------------------------------------------~~i~-VivGG~~p~~d~~~l~~~G 699 (727)
T 1req_A 665 PALRKELDKLGR--------------------------------------------PDIL-ITVGGVIPEQDFDELRKDG 699 (727)
T ss_dssp HHHHHHHHHTTC--------------------------------------------TTSE-EEEEESCCGGGHHHHHHTT
T ss_pred HHHHHHHHhcCC--------------------------------------------CCCE-EEEcCCCccccHHHHHhCC
Confidence 467777876332 2333 3344323333556678999
Q ss_pred CCeEEeCCCCHHHH-HHHHHHH
Q 023816 180 AEDFIVKPVKLSDV-KRIKDYL 200 (276)
Q Consensus 180 a~d~l~KPv~~~~L-~~~~~~l 200 (276)
++.|+..-.+..++ ..+++.+
T Consensus 700 aD~~f~~gt~~~e~a~~l~~~l 721 (727)
T 1req_A 700 AVEIYTPGTVIPESAISLVKKL 721 (727)
T ss_dssp EEEEECTTCCHHHHHHHHHHHH
T ss_pred CCEEEcCCccHHHHHHHHHHHH
Confidence 99999876677666 3444444
No 124
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=84.89 E-value=1.9 Score=38.22 Aligned_cols=47 Identities=23% Similarity=0.378 Sum_probs=35.1
Q ss_pred CCeEEEEecCC------CHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 023816 157 EIPVVIMSSEN------ILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 157 ~ipiV~ls~~~------~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~~ 203 (276)
++||++|+-.+ .......+.++|++.++.-....+++.+.++.+.+.
T Consensus 94 ~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~~~~ 146 (268)
T 1qop_A 94 TIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRH 146 (268)
T ss_dssp SSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHT
T ss_pred CCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHc
Confidence 58888886332 246788899999999999888877777766666543
No 125
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=84.67 E-value=9.4 Score=33.65 Aligned_cols=72 Identities=14% Similarity=0.084 Sum_probs=52.0
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC-CCH-
Q 023816 29 EVHVLAV----DDSFVDRKVIERLLTISSCKVTA---VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-MTG- 99 (276)
Q Consensus 29 ~~~VLIV----dD~~~~~~~L~~~L~~~g~~v~~---a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~-~~G- 99 (276)
.-+||+. |-+..-...+..+|+..||+|.. -...++.++.+ ...++|+|.+...+.. +..
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~-----------~~~~~d~V~lS~l~~~~~~~~ 191 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAV-----------QKEKPIMLTGTALMTTTMYAF 191 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHH-----------HHHCCSEEEEECCCTTTTTHH
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEEeeccCCHHHH
Confidence 4567776 56667788899999999999875 23556666666 5568999999987764 333
Q ss_pred HHHHHHHHhhCC
Q 023816 100 YELLKKIKVTTP 111 (276)
Q Consensus 100 ~ell~~Ir~~~p 111 (276)
-++++.+|+..+
T Consensus 192 ~~~i~~l~~~~~ 203 (258)
T 2i2x_B 192 KEVNDMLLENGI 203 (258)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHHHHHhcCC
Confidence 357788886444
No 126
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=84.63 E-value=11 Score=39.09 Aligned_cols=114 Identities=15% Similarity=0.046 Sum_probs=74.5
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC-C-CH
Q 023816 29 EVHVLAV----DDSFVDRKVIERLLTISSCKVTAV---DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-M-TG 99 (276)
Q Consensus 29 ~~~VLIV----dD~~~~~~~L~~~L~~~g~~v~~a---~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~-~-~G 99 (276)
..+|++. |-+.+-.+.+..+|+..||+|... .+.++.++.+ .+.++|+|.+..-|.. + ..
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA-----------~e~~adiVglSsl~~~~~~~~ 672 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQA-----------VDADVHAVGVSTLAAGHKTLV 672 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH-----------HHTTCSEEEEEECSSCHHHHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHH-----------HHcCCCEEEEeeecHHHHHHH
Confidence 4567765 445556667788999999999873 3567888777 5668999998876643 2 23
Q ss_pred HHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcC
Q 023816 100 YELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDG 179 (276)
Q Consensus 100 ~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~G 179 (276)
-++++.|++... ++++| ++-+-.-..+...+.+.|
T Consensus 673 ~~vi~~Lr~~G~--------------------------------------------~dv~V-ivGG~~P~~d~~~l~~~G 707 (762)
T 2xij_A 673 PELIKELNSLGR--------------------------------------------PDILV-MCGGVIPPQDYEFLFEVG 707 (762)
T ss_dssp HHHHHHHHHTTC--------------------------------------------TTSEE-EEEESCCGGGHHHHHHHT
T ss_pred HHHHHHHHhcCC--------------------------------------------CCCEE-EEeCCCCcccHHHHHhCC
Confidence 467777776332 24333 333323333456678999
Q ss_pred CCeEEeCCCCHHHHHHHHH
Q 023816 180 AEDFIVKPVKLSDVKRIKD 198 (276)
Q Consensus 180 a~d~l~KPv~~~~L~~~~~ 198 (276)
++.|+..--+..++...+.
T Consensus 708 aD~~f~pgtd~~e~~~~i~ 726 (762)
T 2xij_A 708 VSNVFGPGTRIPKAAVQVL 726 (762)
T ss_dssp CCEEECTTCCHHHHHHHHH
T ss_pred CCEEeCCCCCHHHHHHHHH
Confidence 9999986667777643333
No 127
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=84.56 E-value=3 Score=35.75 Aligned_cols=45 Identities=16% Similarity=0.263 Sum_probs=31.5
Q ss_pred CCeEEEEecCCC------HHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENI------LARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 201 (276)
Q Consensus 157 ~ipiV~ls~~~~------~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~ 201 (276)
++||++++..+. .+.+..++++||+..+.-.....+..++++.+.
T Consensus 80 ~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~ 130 (248)
T 1geq_A 80 STPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAR 130 (248)
T ss_dssp CCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHH
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHHHHH
Confidence 468888874333 578889999999999987665555555544444
No 128
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=82.20 E-value=6.8 Score=32.58 Aligned_cols=28 Identities=11% Similarity=0.096 Sum_probs=21.1
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++||++-.+= ..+.+.+++++||+.++.
T Consensus 159 ~~~i~~~gGI-~~~~~~~~~~~Gad~vvv 186 (211)
T 3f4w_A 159 KARIAVAGGI-SSQTVKDYALLGPDVVIV 186 (211)
T ss_dssp SCEEEEESSC-CTTTHHHHHTTCCSEEEE
T ss_pred CCcEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 5777655444 478888999999998875
No 129
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=81.15 E-value=2.3 Score=38.49 Aligned_cols=46 Identities=15% Similarity=0.313 Sum_probs=35.5
Q ss_pred CCeEEEEecC------CCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSE------NILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 157 ~ipiV~ls~~------~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
++|+|+|+-. .......+|.++|++.+|.--+..++....+..+..
T Consensus 97 ~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~ 148 (271)
T 3nav_A 97 ETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEK 148 (271)
T ss_dssp TSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHH
T ss_pred CCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Confidence 7899999743 335678899999999999987877776666665554
No 130
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=80.88 E-value=17 Score=32.57 Aligned_cols=30 Identities=17% Similarity=0.095 Sum_probs=26.6
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
++|+|+.++-...+++.++.+.|++.+++=
T Consensus 213 ~~pvVaegGI~t~edv~~l~~~GadgvlVG 242 (272)
T 3qja_A 213 SVIRIAESGVRGTADLLAYAGAGADAVLVG 242 (272)
T ss_dssp TSEEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred cCEEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 588998888888999999999999999983
No 131
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=80.62 E-value=6.1 Score=33.34 Aligned_cols=70 Identities=7% Similarity=0.075 Sum_probs=50.2
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHhhCCCEEEEEC---CHHHHHHHhcccccccccCCCCCceeEEEEecCCCC-CC-H
Q 023816 29 EVHVLAV----DDSFVDRKVIERLLTISSCKVTAVD---SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-MT-G 99 (276)
Q Consensus 29 ~~~VLIV----dD~~~~~~~L~~~L~~~g~~v~~a~---~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~-~~-G 99 (276)
.-+||+. |-+..-...+..+|+..||+|.... ..++.++.+ ...++|+|.+...+.. +. -
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~-----------~~~~~d~v~lS~~~~~~~~~~ 156 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAV-----------KKYQPDIVGMSALLTTTMMNM 156 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHH-----------HHHCCSEEEEECCSGGGTHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEeccccccHHHH
Confidence 4477777 6667788889999999999999733 456666666 4568999999987653 22 2
Q ss_pred HHHHHHHHhh
Q 023816 100 YELLKKIKVT 109 (276)
Q Consensus 100 ~ell~~Ir~~ 109 (276)
.++++.+|+.
T Consensus 157 ~~~i~~l~~~ 166 (210)
T 1y80_A 157 KSTIDALIAA 166 (210)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 3566777753
No 132
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=77.00 E-value=23 Score=27.34 Aligned_cols=40 Identities=20% Similarity=0.188 Sum_probs=23.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHh
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFL 69 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l 69 (276)
.-+|+|+.-...-+. +.+.|...|++|+.++.-.+.++.+
T Consensus 7 ~~~viIiG~G~~G~~-la~~L~~~g~~v~vid~~~~~~~~~ 46 (140)
T 3fwz_A 7 CNHALLVGYGRVGSL-LGEKLLASDIPLVVIETSRTRVDEL 46 (140)
T ss_dssp CSCEEEECCSHHHHH-HHHHHHHTTCCEEEEESCHHHHHHH
T ss_pred CCCEEEECcCHHHHH-HHHHHHHCCCCEEEEECCHHHHHHH
Confidence 446777776654443 3345555677777766555555544
No 133
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=76.58 E-value=11 Score=32.53 Aligned_cols=70 Identities=9% Similarity=0.135 Sum_probs=50.8
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhcccccccccCCCCCceeEEEE--ecCCCC-CC
Q 023816 29 EVHVLAV----DDSFVDRKVIERLLTISSCKVTAV---DSGRRALQFLGLDEEQSINGFDGLKVDLIIT--DYCMPG-MT 98 (276)
Q Consensus 29 ~~~VLIV----dD~~~~~~~L~~~L~~~g~~v~~a---~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~--D~~mp~-~~ 98 (276)
.-+||+. |-+..-...+..+|+..||+|... ...++.++.+ .+.++|+|.+ ..-|.. +.
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~-----------~~~~~d~v~l~~S~l~~~~~~ 160 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEA-----------AKHKGEKVLLVGSALMTTSML 160 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHH-----------HHTTTSCEEEEEECSSHHHHT
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHH-----------HHcCCCEEEEEchhcccCcHH
Confidence 4567766 566777888999999999999873 3566777777 5678999999 876642 33
Q ss_pred -HHHHHHHHHhh
Q 023816 99 -GYELLKKIKVT 109 (276)
Q Consensus 99 -G~ell~~Ir~~ 109 (276)
--++++.+++.
T Consensus 161 ~~~~~i~~l~~~ 172 (215)
T 3ezx_A 161 GQKDLMDRLNEE 172 (215)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 34577777763
No 134
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=75.98 E-value=31 Score=31.09 Aligned_cols=69 Identities=12% Similarity=0.134 Sum_probs=47.6
Q ss_pred ccEEEEE----eCCHHHHHHHHHH--------HhhC-CCEEEE---ECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 29 EVHVLAV----DDSFVDRKVIERL--------LTIS-SCKVTA---VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 29 ~~~VLIV----dD~~~~~~~L~~~--------L~~~-g~~v~~---a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
..+|++. |-+.+-.+.+..+ |+.. ||+|+. --..++.++.+ .+.++|+|.+..
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa-----------~e~~~d~VglS~ 188 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKA-----------VELEADVLLVSQ 188 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHH-----------HHTTCSEEEEEC
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEEe
Confidence 4566654 5556666667777 8999 999986 33567777777 567899999999
Q ss_pred CCCCC----CH-HHHHHHHHh
Q 023816 93 CMPGM----TG-YELLKKIKV 108 (276)
Q Consensus 93 ~mp~~----~G-~ell~~Ir~ 108 (276)
-|... .. -++++.+++
T Consensus 189 l~t~~~~~~~~~~~~i~~L~~ 209 (262)
T 1xrs_B 189 TVTQKNVHIQNMTHLIELLEA 209 (262)
T ss_dssp CCCTTSHHHHHHHHHHHHHHH
T ss_pred ecCCccchHHHHHHHHHHHHh
Confidence 88652 22 235666665
No 135
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=75.46 E-value=5.1 Score=36.75 Aligned_cols=57 Identities=11% Similarity=0.184 Sum_probs=47.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhh---CCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTI---SSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG 96 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~---~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~ 96 (276)
++|+.|+|.+....+.|..+|.. ..+++..+.+.+.+.+++ ++.++|++|+|=.+..
T Consensus 21 ~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~-----------~~~~~dilli~e~~~~ 80 (373)
T 3fkq_A 21 KIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESV-----------KEYRIDVLIAEEDFNI 80 (373)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHH-----------HHHTCSEEEEETTCCC
T ss_pred eEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH-----------hcCCCCEEEEcchhhh
Confidence 78999999999999999888853 358999999999999988 4567899998876644
No 136
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=75.18 E-value=5.1 Score=36.03 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=34.4
Q ss_pred CCeEEEEecCC------CHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 023816 157 EIPVVIMSSEN------ILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 157 ~ipiV~ls~~~------~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~~ 203 (276)
++||++|+-.+ .......|.++|++++|.-.+..+++...++.+...
T Consensus 91 ~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~~ 143 (271)
T 1ujp_A 91 EKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEI 143 (271)
T ss_dssp CSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHH
T ss_pred CCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHHc
Confidence 68999985333 244567799999999999888777776666665543
No 137
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=74.01 E-value=14 Score=33.44 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=30.6
Q ss_pred CeEEEE--ecCCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 023816 158 IPVVIM--SSENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 202 (276)
Q Consensus 158 ipiV~l--s~~~~~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~~ 202 (276)
+-+|++ ......+....|+++|..=|+.||+ +.++..++++...+
T Consensus 90 ~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~ 138 (350)
T 3rc1_A 90 VDAVYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARE 138 (350)
T ss_dssp CSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred CCEEEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 344444 3334466778899999999999997 55666666665544
No 138
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=73.77 E-value=12 Score=34.47 Aligned_cols=70 Identities=17% Similarity=0.174 Sum_probs=47.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC-----CHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTIS-SCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM-----TGY 100 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~-g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~-----~G~ 100 (276)
+..+|.+||=++...+..++.+... +-++. ...++.+.++.. ....||+|++|...+.. ...
T Consensus 112 p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~-----------~~~~fDvIi~D~~~~~~~~~~L~t~ 180 (317)
T 3gjy_A 112 PQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESF-----------TPASRDVIIRDVFAGAITPQNFTTV 180 (317)
T ss_dssp TTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTC-----------CTTCEEEEEECCSTTSCCCGGGSBH
T ss_pred CCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhc-----------cCCCCCEEEECCCCccccchhhhHH
Confidence 3568999999999999998887643 22343 367777766543 34579999999755432 225
Q ss_pred HHHHHHHh
Q 023816 101 ELLKKIKV 108 (276)
Q Consensus 101 ell~~Ir~ 108 (276)
++++.+++
T Consensus 181 efl~~~~r 188 (317)
T 3gjy_A 181 EFFEHCHR 188 (317)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 67777765
No 139
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=72.99 E-value=52 Score=31.30 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=24.5
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+|||+--+-.+..++.+++++||+....
T Consensus 246 ~IPVIA~GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 246 GIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp TCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred CCCEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 68988877777899999999999987653
No 140
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=72.57 E-value=1.8 Score=39.07 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=26.9
Q ss_pred ccEEEEEeCC--HHHHHHHHHHHhhCCCEEEEECC
Q 023816 29 EVHVLAVDDS--FVDRKVIERLLTISSCKVTAVDS 61 (276)
Q Consensus 29 ~~~VLIVdD~--~~~~~~L~~~L~~~g~~v~~a~~ 61 (276)
+.+||||+++ +.-...+.++|+..|++|.....
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~ 38 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPS 38 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECT
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecc
Confidence 4689999988 66778899999999999988664
No 141
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=71.72 E-value=24 Score=30.86 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=32.2
Q ss_pred CCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 155 LREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 155 ~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
...+|||+-. .....+.++.|-.+++.+|-+.+++.+.+.++..
T Consensus 305 a~G~PvI~~~----~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 348 (406)
T 2gek_A 305 AAGTAVVASD----LDAFRRVLADGDAGRLVPVDDADGMAAALIGILE 348 (406)
T ss_dssp HHTCEEEECC----CHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHH
T ss_pred HcCCCEEEec----CCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHc
Confidence 3368877532 2456677888899999999999999777766543
No 142
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=71.34 E-value=19 Score=30.40 Aligned_cols=66 Identities=9% Similarity=0.039 Sum_probs=46.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCE---EEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCK---VTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~---v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~ 104 (276)
..+|..||-++...+..++.++..|+. +.. ..+..+.+..+ ....||+|++|...+ +-.++++
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~-----------~~~~fD~V~~d~~~~--~~~~~l~ 147 (221)
T 3dr5_A 81 NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRL-----------ANDSYQLVFGQVSPM--DLKALVD 147 (221)
T ss_dssp TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGS-----------CTTCEEEEEECCCTT--THHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHh-----------cCCCcCeEEEcCcHH--HHHHHHH
Confidence 468999999999999999999988764 554 45555544433 345799999996432 3334555
Q ss_pred HHH
Q 023816 105 KIK 107 (276)
Q Consensus 105 ~Ir 107 (276)
++.
T Consensus 148 ~~~ 150 (221)
T 3dr5_A 148 AAW 150 (221)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 143
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=71.23 E-value=33 Score=28.69 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=22.1
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++||++.-+= ..+.+.++++.|++.+..
T Consensus 164 ~~pvia~GGI-~~~nv~~~~~~Ga~gv~v 191 (221)
T 1yad_A 164 SIPVIAIGGM-TPDRLRDVKQAGADGIAV 191 (221)
T ss_dssp CSCEEEESSC-CGGGHHHHHHTTCSEEEE
T ss_pred CCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 5787766555 788899999999998765
No 144
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=71.14 E-value=29 Score=35.91 Aligned_cols=69 Identities=12% Similarity=0.103 Sum_probs=47.0
Q ss_pred ccEEEEE----eCCHHHHHHH----HHHHhhCCCEEEEE---CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC-
Q 023816 29 EVHVLAV----DDSFVDRKVI----ERLLTISSCKVTAV---DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG- 96 (276)
Q Consensus 29 ~~~VLIV----dD~~~~~~~L----~~~L~~~g~~v~~a---~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~- 96 (276)
..+||+. |=..+-.+++ ..+|+..||+|+-. -..++.++.+ .+.++|+|.+..-|..
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA-----------~EedADVVGLSsLLTt~ 670 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAA-----------IELKADAILASTIISHD 670 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHH-----------HHTTCSEEEEECCCCGG
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEeccccCc
Confidence 4577776 3333333322 57899999999863 3678888887 5678999999988765
Q ss_pred ---CCHH-HHHHHHHh
Q 023816 97 ---MTGY-ELLKKIKV 108 (276)
Q Consensus 97 ---~~G~-ell~~Ir~ 108 (276)
+..+ ++++.+++
T Consensus 671 dihL~~MkevIelLrE 686 (763)
T 3kp1_A 671 DIHYKNMKRIHELAVE 686 (763)
T ss_dssp GHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHh
Confidence 3333 46666775
No 145
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=69.89 E-value=63 Score=29.08 Aligned_cols=87 Identities=14% Similarity=0.098 Sum_probs=57.9
Q ss_pred HHHHHHHhhCCCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecC-CCCC-CHHHHHHHHHhhCCCCcccchh
Q 023816 43 KVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC-MPGM-TGYELLKKIKVTTPFNFLYSTI 119 (276)
Q Consensus 43 ~~L~~~L~~~g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~-mp~~-~G~ell~~Ir~~~p~~~~~~~~ 119 (276)
+.+.+..+..|..+.. +.+.+|+.+.+ ...+|+|=+.-. +-.. -.++.+.++...-|
T Consensus 159 ~~l~~~a~~lGl~~lvevh~~eEl~~A~------------~~ga~iIGinnr~l~t~~~dl~~~~~L~~~ip-------- 218 (272)
T 3tsm_A 159 KELEDTAFALGMDALIEVHDEAEMERAL------------KLSSRLLGVNNRNLRSFEVNLAVSERLAKMAP-------- 218 (272)
T ss_dssp HHHHHHHHHTTCEEEEEECSHHHHHHHT------------TSCCSEEEEECBCTTTCCBCTHHHHHHHHHSC--------
T ss_pred HHHHHHHHHcCCeEEEEeCCHHHHHHHH------------hcCCCEEEECCCCCccCCCChHHHHHHHHhCC--------
Confidence 3444445667887665 78888875544 446787765521 1110 02455556654333
Q ss_pred eehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 120 IVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.++|+|.-++-...+++.++.+.|++.+++
T Consensus 219 ------------------------------------~~~~vIaesGI~t~edv~~l~~~Ga~gvLV 248 (272)
T 3tsm_A 219 ------------------------------------SDRLLVGESGIFTHEDCLRLEKSGIGTFLI 248 (272)
T ss_dssp ------------------------------------TTSEEEEESSCCSHHHHHHHHTTTCCEEEE
T ss_pred ------------------------------------CCCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 158999999988999999999999999987
No 146
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=69.07 E-value=35 Score=27.97 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++||++.-+-+ .+.+.++++.|++.+..
T Consensus 162 ~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 189 (215)
T 1xi3_A 162 KIPVVAIGGIN-KDNAREVLKTGVDGIAV 189 (215)
T ss_dssp SSCEEEESSCC-TTTHHHHHTTTCSEEEE
T ss_pred CCCEEEECCcC-HHHHHHHHHcCCCEEEE
Confidence 47877665544 77888899999998854
No 147
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=67.33 E-value=56 Score=27.51 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=51.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEe----------cCCC--
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITD----------YCMP-- 95 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D----------~~mp-- 95 (276)
..+++++-..+.+.+.++++..+.+.++.. ..+.+++++..... ...+|+||.- +..|
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~---------~~~~dVIISRGgta~~lr~~~~iPVV 74 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGL---------QDEVDAIISRGATSDYIKKSVSIPSI 74 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHH---------TTTCSEEEEEHHHHHHHHTTCSSCEE
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHh---------cCCCeEEEECChHHHHHHHhCCCCEE
Confidence 358899989999999999999887777654 67788888877321 2457888721 1233
Q ss_pred --CCCHHHHHHHHHhhCC
Q 023816 96 --GMTGYELLKKIKVTTP 111 (276)
Q Consensus 96 --~~~G~ell~~Ir~~~p 111 (276)
..+|+++++.|+....
T Consensus 75 ~I~~s~~Dil~al~~a~~ 92 (196)
T 2q5c_A 75 SIKVTRFDTMRAVYNAKR 92 (196)
T ss_dssp EECCCHHHHHHHHHHHGG
T ss_pred EEcCCHhHHHHHHHHHHh
Confidence 3577777777766554
No 148
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=67.17 E-value=44 Score=26.25 Aligned_cols=41 Identities=5% Similarity=0.020 Sum_probs=29.2
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
.+|||+.- . ....+.+ .|-.+++..|-+.+++.+.+..+..
T Consensus 139 G~PvI~~~---~-~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 139 GAIPIASA---V-GGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp TCEEEEES---C-HHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred CCCEEEeC---C-CChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 78876542 2 2344555 7888999999999999777777665
No 149
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=65.98 E-value=55 Score=29.31 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=23.8
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++||++--+-.+.+.+.++++.||+....
T Consensus 172 ~iPviaaGGI~~~~~v~~al~~GAdgV~v 200 (328)
T 2gjl_A 172 RVPIIASGGFADGRGLVAALALGADAINM 200 (328)
T ss_dssp CSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 58888777776788999999999988764
No 150
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=65.83 E-value=22 Score=31.94 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=31.5
Q ss_pred CeEEEEe--cCCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 023816 158 IPVVIMS--SENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 202 (276)
Q Consensus 158 ipiV~ls--~~~~~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~~ 202 (276)
+-+|+++ .....+....|+++|..=|+.||+ +.++..++++...+
T Consensus 83 vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 131 (340)
T 1zh8_A 83 VDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEK 131 (340)
T ss_dssp CSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4444443 334456788999999999999997 66777676665543
No 151
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=64.20 E-value=23 Score=32.97 Aligned_cols=34 Identities=12% Similarity=0.199 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 169 LARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 169 ~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
.+...+|+++|..=++.||++.++..++++...+
T Consensus 84 ~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~ 117 (372)
T 4gmf_A 84 TQLARHFLARGVHVIQEHPLHPDDISSLQTLAQE 117 (372)
T ss_dssp HHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHH
Confidence 4678899999999999999999888777665543
No 152
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=63.30 E-value=16 Score=32.45 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=28.2
Q ss_pred CCeEEE-EecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 023816 157 EIPVVI-MSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 201 (276)
Q Consensus 157 ~ipiV~-ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~ 201 (276)
+.|+.+ +--.+-...+..+.++||+-+..-......+.+.++.+.
T Consensus 86 ~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir 131 (246)
T 3inp_A 86 TAGMDVHLMVKPVDALIESFAKAGATSIVFHPEASEHIDRSLQLIK 131 (246)
T ss_dssp CSCEEEEEECSSCHHHHHHHHHHTCSEEEECGGGCSCHHHHHHHHH
T ss_pred CCeEEEEEeeCCHHHHHHHHHHcCCCEEEEccccchhHHHHHHHHH
Confidence 455533 444455667888999999877666543344556666654
No 153
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=62.90 E-value=11 Score=33.50 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=26.6
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
++|||+..+=...+++.++++.||+.+++=
T Consensus 178 ~iPviv~gGI~t~eda~~~~~~GAdgViVG 207 (264)
T 1xm3_A 178 KVPVIVDAGIGSPKDAAYAMELGADGVLLN 207 (264)
T ss_dssp SSCBEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEEEEc
Confidence 689999888888999999999999998864
No 154
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=62.66 E-value=79 Score=27.63 Aligned_cols=44 Identities=5% Similarity=-0.045 Sum_probs=31.3
Q ss_pred CCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 154 ALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 154 ~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
....+|||+- .. ....+.++.| .+++..|-+.+++.+.+..+..
T Consensus 351 ma~G~Pvi~s-~~---~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 351 MCLGAIPIAS-AV---GGLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp HHTTCEEEEE-SS---THHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred HHCCCCeEEc-CC---CCcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 3447888764 22 2344566677 8999999999999777776665
No 155
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=62.63 E-value=21 Score=31.76 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=30.3
Q ss_pred CeEEEEe--cCCCHHHHHHHHhcCCCeEEeCCCC--HHHHHHHHHHHH
Q 023816 158 IPVVIMS--SENILARIDRCLEDGAEDFIVKPVK--LSDVKRIKDYLT 201 (276)
Q Consensus 158 ipiV~ls--~~~~~~~~~~al~~Ga~d~l~KPv~--~~~L~~~~~~l~ 201 (276)
+-+|+++ .....+....|+++|..=|+.||+. .++.+++++...
T Consensus 95 iDaV~IatP~~~H~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 142 (393)
T 4fb5_A 95 VDVVSVTTPNQFHAEMAIAALEAGKHVWCEKPMAPAYADAERMLATAE 142 (393)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHH
T ss_pred CcEEEECCChHHHHHHHHHHHhcCCeEEEccCCcccHHHHHHhhhhHH
Confidence 4444443 3344667889999999999999974 566666665554
No 156
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=62.50 E-value=23 Score=33.45 Aligned_cols=27 Identities=11% Similarity=0.078 Sum_probs=20.2
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+.||+-+. +........++||+..+.
T Consensus 95 ~~~Iiara~--~~~~~~~L~~~Gad~Vi~ 121 (413)
T 3l9w_A 95 HLQIIARAR--DVDHYIRLRQAGVEKPER 121 (413)
T ss_dssp TCEEEEEES--SHHHHHHHHHTTCSSCEE
T ss_pred CCeEEEEEC--CHHHHHHHHHCCCCEEEC
Confidence 677877764 456777788999998775
No 157
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=61.26 E-value=69 Score=28.94 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=24.3
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+|||+..+-.+.+.+.++++.||+....
T Consensus 176 ~iPviaaGGI~~~~dv~~al~~GA~gV~v 204 (326)
T 3bo9_A 176 NIPVIAAGGIADGRGMAAAFALGAEAVQM 204 (326)
T ss_dssp SSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 58888777777789999999999998764
No 158
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=61.09 E-value=22 Score=32.12 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=31.4
Q ss_pred CeEEEEecCCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHHh
Q 023816 158 IPVVIMSSENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTRD 203 (276)
Q Consensus 158 ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~~~ 203 (276)
+-+|........+....|+++|..=|+.||+ +.++.+++++...+.
T Consensus 90 ~V~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~ 137 (357)
T 3ec7_A 90 VVIITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKN 137 (357)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHh
Confidence 3333334444566788899999999999997 566777766655543
No 159
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=60.17 E-value=27 Score=29.94 Aligned_cols=30 Identities=10% Similarity=0.282 Sum_probs=26.2
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
.+|||+..+=...+++.++++.||+.++.=
T Consensus 200 ~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 200 TLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp CSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 689999888888899999999999998764
No 160
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=60.15 E-value=65 Score=30.14 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=24.3
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+|||+--+=....++.+++.+||+....
T Consensus 211 ~iPVIA~GGI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 211 GIPVIADGGIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp TCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 58888777777889999999999987765
No 161
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=60.07 E-value=84 Score=30.44 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=26.0
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
.+|||+--+-....++.+|+++||+..+.=
T Consensus 359 ~iPVIa~GGI~~~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 359 GIPVIADGGIKYSGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp TCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred CCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence 589988888889999999999999988653
No 162
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=60.05 E-value=63 Score=29.14 Aligned_cols=29 Identities=24% Similarity=0.136 Sum_probs=23.9
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++||++.-+-.+.+.+.++++.||+....
T Consensus 162 ~iPViaaGGI~~~~~~~~al~~GAdgV~v 190 (332)
T 2z6i_A 162 SIPVIAAGGIADGEGAAAGFMLGAEAVQV 190 (332)
T ss_dssp SSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCEEEe
Confidence 58988877777789999999999987653
No 163
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=59.92 E-value=48 Score=29.02 Aligned_cols=68 Identities=16% Similarity=0.067 Sum_probs=45.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCC-----CEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCC--H-
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISS-----CKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT--G- 99 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g-----~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~--G- 99 (276)
..+|..||=++...+..++.+...+ -++. ...++.+.+... ...||+|++|...|... +
T Consensus 102 ~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------------~~~fD~Ii~d~~~~~~~~~~l 169 (283)
T 2i7c_A 102 VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------------TNTYDVIIVDSSDPIGPAETL 169 (283)
T ss_dssp CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------------CSCEEEEEEECCCTTTGGGGG
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC------------CCCceEEEEcCCCCCCcchhh
Confidence 4689999999999999888876431 2333 366776655432 34799999998655322 1
Q ss_pred --HHHHHHHHh
Q 023816 100 --YELLKKIKV 108 (276)
Q Consensus 100 --~ell~~Ir~ 108 (276)
.++++.+++
T Consensus 170 ~~~~~l~~~~~ 180 (283)
T 2i7c_A 170 FNQNFYEKIYN 180 (283)
T ss_dssp SSHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 366777665
No 164
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=59.88 E-value=44 Score=27.06 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=44.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCC--EEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~--~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
..+|..||-++...+..++.++..|+ ++.. ..+..+.+..+ . . ||+|++|.. ..+-.++++.
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-----------~-~-fD~v~~~~~--~~~~~~~l~~ 145 (210)
T 3c3p_A 81 SSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ-----------R-D-IDILFMDCD--VFNGADVLER 145 (210)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC-----------C-S-EEEEEEETT--TSCHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC-----------C-C-CCEEEEcCC--hhhhHHHHHH
Confidence 46899999999999999988887765 3443 45655544332 2 3 999999953 3444566666
Q ss_pred HHh
Q 023816 106 IKV 108 (276)
Q Consensus 106 Ir~ 108 (276)
+.+
T Consensus 146 ~~~ 148 (210)
T 3c3p_A 146 MNR 148 (210)
T ss_dssp HGG
T ss_pred HHH
Confidence 654
No 165
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=59.65 E-value=39 Score=26.92 Aligned_cols=68 Identities=18% Similarity=0.077 Sum_probs=45.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC-EEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC--CCHHHHHHH
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSC-KVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG--MTGYELLKK 105 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~-~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~--~~G~ell~~ 105 (276)
-+|..||=++...+..++.++..|. ++. ...+..+.+..+ ....||+|++|.-.-. .+-.++++.
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-----------~~~~fD~i~~~~p~~~~~~~~~~~l~~ 136 (189)
T 3p9n_A 68 ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAG-----------TTSPVDLVLADPPYNVDSADVDAILAA 136 (189)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHC-----------CSSCCSEEEECCCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhc-----------cCCCccEEEECCCCCcchhhHHHHHHH
Confidence 4799999999999999998887775 343 356666555443 3457999999853322 123456666
Q ss_pred HHh
Q 023816 106 IKV 108 (276)
Q Consensus 106 Ir~ 108 (276)
+.+
T Consensus 137 ~~~ 139 (189)
T 3p9n_A 137 LGT 139 (189)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 166
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=59.20 E-value=11 Score=34.53 Aligned_cols=71 Identities=15% Similarity=0.011 Sum_probs=47.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC-CCHHHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-MTGYELLKKIK 107 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~-~~G~ell~~Ir 107 (276)
.-++..||-++...+.|++-++..+---+...++.++++.+.. ...++|+|++|----. .+..++++.|.
T Consensus 113 ~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~---------~~~~fdLVfiDPPYe~k~~~~~vl~~L~ 183 (283)
T 2oo3_A 113 QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLP---------PPEKRGLIFIDPSYERKEEYKEIPYAIK 183 (283)
T ss_dssp TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCS---------CTTSCEEEEECCCCCSTTHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcC---------CCCCccEEEECCCCCCCcHHHHHHHHHH
Confidence 3589999999999999999987643333346788888887732 2346999999953321 23334555554
Q ss_pred h
Q 023816 108 V 108 (276)
Q Consensus 108 ~ 108 (276)
+
T Consensus 184 ~ 184 (283)
T 2oo3_A 184 N 184 (283)
T ss_dssp H
T ss_pred H
Confidence 3
No 167
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=59.07 E-value=1.1e+02 Score=27.96 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=23.5
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++||++.-+-.+.+.+.++++.||+.+..
T Consensus 208 ~iPViaaGGI~~~~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 208 DIPVVAAGGIMRGGQIAAVLAAGADAAQL 236 (369)
T ss_dssp SSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CceEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 58888776666889999999999987654
No 168
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=58.80 E-value=37 Score=29.87 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=23.4
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++|||++.+- ..+.+.++++.||+.+..
T Consensus 191 ~iPvvAiGGI-~~~ni~~~~~aGa~gvav 218 (243)
T 3o63_A 191 DKPWFAIGGI-NAQRLPAVLDAGARRIVV 218 (243)
T ss_dssp CCCEEEESSC-CTTTHHHHHHTTCCCEEE
T ss_pred CCCEEEecCC-CHHHHHHHHHcCCCEEEE
Confidence 6899988765 667788999999999875
No 169
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=58.05 E-value=49 Score=28.25 Aligned_cols=72 Identities=14% Similarity=0.032 Sum_probs=48.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCC--EEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~--~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
..+|..||-++...+..++.++..|+ ++.. ..+..+.+..+... |+....||+|++|.. ..+-.++++.
T Consensus 104 ~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~------~~~~~~fD~V~~d~~--~~~~~~~l~~ 175 (247)
T 1sui_A 104 DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKD------EKNHGSYDFIFVDAD--KDNYLNYHKR 175 (247)
T ss_dssp TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHS------GGGTTCBSEEEECSC--STTHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhc------cCCCCCEEEEEEcCc--hHHHHHHHHH
Confidence 46899999999999999999988876 3543 66777766554110 001357999999964 2334455555
Q ss_pred HHh
Q 023816 106 IKV 108 (276)
Q Consensus 106 Ir~ 108 (276)
+.+
T Consensus 176 ~~~ 178 (247)
T 1sui_A 176 LID 178 (247)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 170
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=57.69 E-value=29 Score=28.44 Aligned_cols=68 Identities=10% Similarity=0.020 Sum_probs=42.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC---EEEE-ECCHHHHHHHhcccccccccCCCCCc-eeEEEEecCCCCCCHHHHHH
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSC---KVTA-VDSGRRALQFLGLDEEQSINGFDGLK-VDLIITDYCMPGMTGYELLK 104 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~---~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~-~DlIL~D~~mp~~~G~ell~ 104 (276)
-+|..||-++...+..++.++..|+ ++.. ..+..+.+..+ .... ||+|++|.-....+..++++
T Consensus 77 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~-----------~~~~~fD~I~~~~~~~~~~~~~~l~ 145 (201)
T 2ift_A 77 KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP-----------QNQPHFDVVFLDPPFHFNLAEQAIS 145 (201)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC-----------CSSCCEEEEEECCCSSSCHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhh-----------ccCCCCCEEEECCCCCCccHHHHHH
Confidence 3788889888888888888877775 3443 33443322211 2346 99999986433233445666
Q ss_pred HHHh
Q 023816 105 KIKV 108 (276)
Q Consensus 105 ~Ir~ 108 (276)
.+.+
T Consensus 146 ~~~~ 149 (201)
T 2ift_A 146 LLCE 149 (201)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6643
No 171
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=57.42 E-value=11 Score=32.76 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=28.4
Q ss_pred CCeEEEEecCCCHH---HHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENILA---RIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 201 (276)
Q Consensus 157 ~ipiV~ls~~~~~~---~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~ 201 (276)
++|++++.-.+ .. ....|.+.|++.++.-....+++.+.+..+.
T Consensus 94 ~~Pv~~m~~~~-~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~~ 140 (262)
T 1rd5_A 94 SCPVVLLSYYK-PIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAK 140 (262)
T ss_dssp SSCEEEECCSH-HHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHH
T ss_pred CCCEEEEecCc-HHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHH
Confidence 58888875222 11 1334899999999987666556656555544
No 172
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=57.37 E-value=74 Score=26.32 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=25.3
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
.+||++..+=...+.+.++++.||+.++.=
T Consensus 175 ~ipvia~GGI~~~~~~~~~~~~Gad~v~vG 204 (223)
T 1y0e_A 175 DAKVIAEGNVITPDMYKRVMDLGVHCSVVG 204 (223)
T ss_dssp CSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEecCCCCHHHHHHHHHcCCCEEEEC
Confidence 588888777778999999999999988763
No 173
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=57.16 E-value=33 Score=28.92 Aligned_cols=71 Identities=11% Similarity=-0.035 Sum_probs=47.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCC--EEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~--~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
..+|..||-++...+..++.++..|+ ++.. ..+..+.+..+... |+....||+|++|... .+-.++++.
T Consensus 95 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~------~~~~~~fD~I~~d~~~--~~~~~~l~~ 166 (237)
T 3c3y_A 95 DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQG------QESEGSYDFGFVDADK--PNYIKYHER 166 (237)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHS------TTCTTCEEEEEECSCG--GGHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc------cCCCCCcCEEEECCch--HHHHHHHHH
Confidence 46899999999999999999988886 3543 66777766554110 1113579999999532 223345555
Q ss_pred HH
Q 023816 106 IK 107 (276)
Q Consensus 106 Ir 107 (276)
+.
T Consensus 167 ~~ 168 (237)
T 3c3y_A 167 LM 168 (237)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 174
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=56.94 E-value=45 Score=27.21 Aligned_cols=66 Identities=8% Similarity=-0.015 Sum_probs=44.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCC-EEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 31 HVLAVDDSFVDRKVIERLLTISSC-KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g~-~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
+|..||-++...+..++.++..|+ .+.. ..+..+.+.. ....||+|++|.-.......++++.+.+
T Consensus 79 ~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~------------~~~~fD~V~~~~p~~~~~~~~~l~~l~~ 146 (202)
T 2fpo_A 79 GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ------------KGTPHNIVFVDPPFRRGLLEETINLLED 146 (202)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS------------CCCCEEEEEECCSSSTTTHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh------------cCCCCCEEEECCCCCCCcHHHHHHHHHh
Confidence 789999999999999888887775 4443 3444433221 2347999999854333445567777765
No 175
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=56.50 E-value=36 Score=30.79 Aligned_cols=51 Identities=10% Similarity=-0.048 Sum_probs=30.4
Q ss_pred ccccCCCCCeEEEEec-CCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 023816 150 QDSSALREIPVVIMSS-ENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 150 ~~~~~~~~ipiV~ls~-~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~~ 203 (276)
--++....+|||+-+. .+..+......+.| ++..+-+.++|.+.+..+..+
T Consensus 295 ~lEAmA~G~PVI~~~~~~~~~e~~~~~~~~G---~l~~~~d~~~La~ai~~ll~d 346 (374)
T 2xci_A 295 LLEPTCWGIPVIYGPYTHKVNDLKEFLEKEG---AGFEVKNETELVTKLTELLSV 346 (374)
T ss_dssp CHHHHTTTCCEEECSCCTTSHHHHHHHHHTT---CEEECCSHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCEEECCCccChHHHHHHHHHCC---CEEEeCCHHHHHHHHHHHHhH
Confidence 3455566899985322 22333333333444 566677888998877777765
No 176
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=56.26 E-value=37 Score=30.72 Aligned_cols=45 Identities=20% Similarity=0.319 Sum_probs=30.3
Q ss_pred CeEEEEec--CCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 023816 158 IPVVIMSS--ENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 202 (276)
Q Consensus 158 ipiV~ls~--~~~~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~~ 202 (276)
+-+|++.. ....+....|+++|..=|+.||+ +.++..++++...+
T Consensus 69 vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~ 117 (359)
T 3m2t_A 69 LDAVVMAGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAARR 117 (359)
T ss_dssp CSEEEECSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred CCEEEEcCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHH
Confidence 34444433 33456677899999999999996 55666666665543
No 177
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=56.23 E-value=23 Score=29.19 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=40.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCE--EEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecC
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCK--VTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC 93 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~--v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~ 93 (276)
..+|..||=++...+..++.++..|.. +.. ..+..+.+..+.. .+....||+|++|..
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~-------~~~~~~fD~V~~d~~ 143 (221)
T 3u81_A 83 GARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKK-------KYDVDTLDMVFLDHW 143 (221)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTT-------TSCCCCCSEEEECSC
T ss_pred CCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHH-------hcCCCceEEEEEcCC
Confidence 468999999999999999998887752 443 6676665554410 011257999999963
No 178
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=56.15 E-value=87 Score=26.98 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=28.5
Q ss_pred CCCCeEEEEec-CCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 155 LREIPVVIMSS-ENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 155 ~~~ipiV~ls~-~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
...+|||+... ... .+.++.| .+++..+ +.++|.+.+..+..
T Consensus 299 a~G~Pvi~~~~~~~~----~e~v~~g-~g~~v~~-d~~~la~~i~~ll~ 341 (375)
T 3beo_A 299 SLGVPVLVLRDTTER----PEGIEAG-TLKLAGT-DEETIFSLADELLS 341 (375)
T ss_dssp HHTCCEEECSSCCSC----HHHHHTT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred hcCCCEEEecCCCCC----ceeecCC-ceEEcCC-CHHHHHHHHHHHHh
Confidence 33789887632 222 3456778 8899877 88999777776654
No 179
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=56.05 E-value=38 Score=27.56 Aligned_cols=70 Identities=10% Similarity=0.012 Sum_probs=46.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCE--EEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCK--VTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~--v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
..+|..||-++...+..++.++..|+. +.. ..+..+.+..+... .....||+|++|.. ..+-.++++.
T Consensus 89 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~-------~~~~~fD~v~~~~~--~~~~~~~l~~ 159 (225)
T 3tr6_A 89 DGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHA-------GQAWQYDLIYIDAD--KANTDLYYEE 159 (225)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTT-------TCTTCEEEEEECSC--GGGHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhc-------cCCCCccEEEECCC--HHHHHHHHHH
Confidence 568999999999999999999887753 443 66776666554110 01157999998863 2223345555
Q ss_pred HH
Q 023816 106 IK 107 (276)
Q Consensus 106 Ir 107 (276)
+.
T Consensus 160 ~~ 161 (225)
T 3tr6_A 160 SL 161 (225)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 180
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=56.02 E-value=8.2 Score=34.83 Aligned_cols=62 Identities=19% Similarity=0.166 Sum_probs=40.0
Q ss_pred CccEEEEEeC-----CHHHHHHHHHHHhhCC-CEEEEECCHHH--HHHHhcccccccccCCCCCceeEEEEecCCCCCC
Q 023816 28 EEVHVLAVDD-----SFVDRKVIERLLTISS-CKVTAVDSGRR--ALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT 98 (276)
Q Consensus 28 ~~~~VLIVdD-----~~~~~~~L~~~L~~~g-~~v~~a~~g~~--al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~ 98 (276)
++++||||.- -+.....|.++|+..| |+|....+... ....+. + .=.++|+||++..+...+
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~--~-------~L~~~D~vV~~~~~~~l~ 72 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV--L-------DFSPYQLVVLDYNGDSWP 72 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC--C-------CCTTCSEEEECCCSSCCC
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh--h-------hhhcCCEEEEeCCCCcCC
Confidence 4789999964 2455678999999888 99998866310 000010 0 113599999888655443
No 181
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=55.89 E-value=55 Score=26.67 Aligned_cols=71 Identities=10% Similarity=0.035 Sum_probs=46.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCC--EEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~--~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
..+|..||-++...+..++.++..|. ++.. ..+..+.+..+.... ....||+|++|.. ..+-.++++.
T Consensus 94 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~-------~~~~~D~v~~d~~--~~~~~~~l~~ 164 (229)
T 2avd_A 94 DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAG-------EAGTFDVAVVDAD--KENCSAYYER 164 (229)
T ss_dssp TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTT-------CTTCEEEEEECSC--STTHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcC-------CCCCccEEEECCC--HHHHHHHHHH
Confidence 46899999999999999999987765 3443 566666655441100 1157999999864 3333455666
Q ss_pred HHh
Q 023816 106 IKV 108 (276)
Q Consensus 106 Ir~ 108 (276)
+.+
T Consensus 165 ~~~ 167 (229)
T 2avd_A 165 CLQ 167 (229)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 182
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=55.73 E-value=59 Score=27.49 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=23.9
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
++||++--+=+..+.+.+++++||+.++.=
T Consensus 191 ~~pi~~~GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 191 RNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp SSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEeecCCHHHHHHHHHcCCCEEEEc
Confidence 578776666666688999999999999874
No 183
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=55.66 E-value=35 Score=28.90 Aligned_cols=29 Identities=28% Similarity=0.280 Sum_probs=25.0
Q ss_pred CCeEEEEecCCCHHHHHHHHhc---CCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLED---GAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~---Ga~d~l~ 185 (276)
.+||++-.+-...+++.++++. ||+.++.
T Consensus 190 ~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~v 221 (244)
T 1vzw_A 190 DRPVVASGGVSSLDDLRAIAGLVPAGVEGAIV 221 (244)
T ss_dssp SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred CCCEEEECCCCCHHHHHHHHhhccCCCceeee
Confidence 5899988877788999999999 9998875
No 184
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=55.42 E-value=76 Score=28.22 Aligned_cols=68 Identities=19% Similarity=0.180 Sum_probs=45.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhh--CC----CEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC-CCH-
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTI--SS----CKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-MTG- 99 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~--~g----~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~-~~G- 99 (276)
..+|..||=++...+..++.+.. .| -++. ...++.+.+... ...||+|++|...|. ++|
T Consensus 101 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------------~~~fD~Ii~d~~~~~~~~~~ 168 (314)
T 1uir_A 101 VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT------------EERYDVVIIDLTDPVGEDNP 168 (314)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC------------CCCEEEEEEECCCCBSTTCG
T ss_pred CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc------------CCCccEEEECCCCcccccCc
Confidence 45899999999999988887753 11 2333 366776655432 347999999986654 212
Q ss_pred ------HHHHHHHHh
Q 023816 100 ------YELLKKIKV 108 (276)
Q Consensus 100 ------~ell~~Ir~ 108 (276)
.++++.+++
T Consensus 169 ~~~l~~~~~l~~~~~ 183 (314)
T 1uir_A 169 ARLLYTVEFYRLVKA 183 (314)
T ss_dssp GGGGSSHHHHHHHHH
T ss_pred chhccHHHHHHHHHH
Confidence 466777765
No 185
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=55.36 E-value=46 Score=27.59 Aligned_cols=28 Identities=18% Similarity=0.378 Sum_probs=20.7
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++||++.-+-+ .+.+.++++.|++.+..
T Consensus 172 ~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 199 (227)
T 2tps_A 172 SIPIVGIGGIT-IDNAAPVIQAGADGVSM 199 (227)
T ss_dssp CCCEEEESSCC-TTTSHHHHHTTCSEEEE
T ss_pred CCCEEEEcCCC-HHHHHHHHHcCCCEEEE
Confidence 37877665544 77788888999998764
No 186
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=55.25 E-value=21 Score=29.66 Aligned_cols=29 Identities=10% Similarity=0.209 Sum_probs=22.5
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
++||++..+-+ .+.+.++++.|++.+..=
T Consensus 148 ~ipvia~GGI~-~~~i~~~~~~Ga~gv~vG 176 (212)
T 2v82_A 148 DIAVFAVGGVT-PENLAQWIDAGCAGAGLG 176 (212)
T ss_dssp TCEEEEESSCC-TTTHHHHHHHTCSEEEEC
T ss_pred CCeEEEeCCCC-HHHHHHHHHcCCCEEEEC
Confidence 47887776655 778889999999998743
No 187
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=55.24 E-value=25 Score=31.90 Aligned_cols=44 Identities=11% Similarity=0.277 Sum_probs=30.1
Q ss_pred CeEEEEecC--CCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHH
Q 023816 158 IPVVIMSSE--NILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLT 201 (276)
Q Consensus 158 ipiV~ls~~--~~~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~ 201 (276)
+-+|++... ...+....|+++|..=|+.||+ +.++..++++...
T Consensus 89 vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 136 (361)
T 3u3x_A 89 IGLIVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQA 136 (361)
T ss_dssp CCEEEECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHH
T ss_pred CCEEEEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 444444333 3455678899999999999997 5666666666544
No 188
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=54.17 E-value=29 Score=27.20 Aligned_cols=53 Identities=21% Similarity=0.099 Sum_probs=40.9
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 24 PSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 24 ~~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
..+..+.+|.++.... ...+|+..|.++..+.+..++++.+ ..++.|.+++|.
T Consensus 107 ~~dL~g~~i~~~~g~~-----~~~~l~~~~~~~~~~~~~~~~~~~l-----------~~g~~D~~~~~~ 159 (228)
T 2pyy_A 107 IDDLPGKVVATTAGST-----AATYLREHHISVLEVPKIEEAYKAL-----------QTKKADAVVFDA 159 (228)
T ss_dssp GGGCTTCEEEEETTSH-----HHHHHHHTTCEEEEESSHHHHHHHH-----------HTTSSSEEEEEH
T ss_pred HHHcCCCeEEEEcCcH-----HHHHHHHcCCceEecCCHHHHHHHH-----------HcCCCCEEEecH
Confidence 3455677888876665 2345566789999999999999999 677899999984
No 189
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=54.15 E-value=36 Score=31.60 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=30.9
Q ss_pred CeEEEEec--CCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 023816 158 IPVVIMSS--ENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 202 (276)
Q Consensus 158 ipiV~ls~--~~~~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~~ 202 (276)
+-+|++.. ....+....|+++|..=|+.||+ +.++..++++...+
T Consensus 111 vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 159 (417)
T 3v5n_A 111 IEAVAIVTPNHVHYAAAKEFLKRGIHVICDKPLTSTLADAKKLKKAADE 159 (417)
T ss_dssp CSEEEECSCTTSHHHHHHHHHTTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred CcEEEECCCcHHHHHHHHHHHhCCCeEEEECCCcCCHHHHHHHHHHHHH
Confidence 44444433 33466788899999999999996 55667666665543
No 190
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=53.77 E-value=19 Score=33.20 Aligned_cols=63 Identities=25% Similarity=0.396 Sum_probs=46.2
Q ss_pred eCCHHHHHHHHHHHhhC-CCEEEE------ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCC-CCCHHHHHHHHH
Q 023816 36 DDSFVDRKVIERLLTIS-SCKVTA------VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-GMTGYELLKKIK 107 (276)
Q Consensus 36 dD~~~~~~~L~~~L~~~-g~~v~~------a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp-~~~G~ell~~Ir 107 (276)
+|..++...++++++.. +..|+. +.+..+|++.+ ....+|-||+.=+-+ ..+|++.++++.
T Consensus 135 ~dg~iD~~~~~~Li~~a~~l~vTFHRAFD~~~d~~~Ale~L-----------i~lGvdrILTSG~~~~a~~Gl~~Lk~Lv 203 (287)
T 3iwp_A 135 EDGHIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETL-----------LTLGFERVLTSGCDSSALEGLPLIKRLI 203 (287)
T ss_dssp TTSCBCHHHHHHHHHHHTTSCEEECGGGGGCSCHHHHHHHH-----------HHHTCSEEEECTTSSSTTTTHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHcCCCcEEEECchhccCCHHHHHHHH-----------HHcCCCEEECCCCCCChHHhHHHHHHHH
Confidence 46667777888887754 356665 34688899988 445799999987655 378999999987
Q ss_pred hh
Q 023816 108 VT 109 (276)
Q Consensus 108 ~~ 109 (276)
++
T Consensus 204 ~~ 205 (287)
T 3iwp_A 204 EQ 205 (287)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 191
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=53.63 E-value=58 Score=27.55 Aligned_cols=68 Identities=19% Similarity=0.194 Sum_probs=47.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCE--EEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCK--VTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~--v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
..+|..||-++...+..++.++..|+. +.. ..+..+.+..+. ....||+|++|.. ..+-..+++.
T Consensus 88 ~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~----------~~~~fD~V~~d~~--~~~~~~~l~~ 155 (248)
T 3tfw_A 88 DGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG----------ECPAFDLIFIDAD--KPNNPHYLRW 155 (248)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC----------SCCCCSEEEECSC--GGGHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC----------CCCCeEEEEECCc--hHHHHHHHHH
Confidence 568999999999999999999888753 443 667766665541 2347999999873 2233345655
Q ss_pred HHh
Q 023816 106 IKV 108 (276)
Q Consensus 106 Ir~ 108 (276)
+.+
T Consensus 156 ~~~ 158 (248)
T 3tfw_A 156 ALR 158 (248)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 192
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=53.33 E-value=82 Score=29.22 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=23.8
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+|||+--+=...+++.+++++||+....
T Consensus 207 ~iPVIA~GGI~~~~di~kala~GAd~V~v 235 (361)
T 3khj_A 207 GIPIIADGGIRYSGDIGKALAVGASSVMI 235 (361)
T ss_dssp TCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred CCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 57888776667889999999999987754
No 193
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=53.16 E-value=65 Score=27.42 Aligned_cols=64 Identities=20% Similarity=0.133 Sum_probs=48.2
Q ss_pred ccEEEEEe------CCHHHHHHHHHHHhhCCCEEEEE----CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCC
Q 023816 29 EVHVLAVD------DSFVDRKVIERLLTISSCKVTAV----DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT 98 (276)
Q Consensus 29 ~~~VLIVd------D~~~~~~~L~~~L~~~g~~v~~a----~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~ 98 (276)
.-+|++|+ |...+.+.+++.|+..|+++... .+.++..+.+. ..|.|++ |+.+
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~-------------~ad~I~l----~GG~ 89 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLR-------------KNDFIYV----TGGN 89 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHH-------------HSSEEEE----CCSC
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHH-------------hCCEEEE----CCCC
Confidence 46889986 44457788889999999999887 47776666662 3577774 7888
Q ss_pred HHHHHHHHHhh
Q 023816 99 GYELLKKIKVT 109 (276)
Q Consensus 99 G~ell~~Ir~~ 109 (276)
-..+++.+++.
T Consensus 90 ~~~l~~~L~~~ 100 (206)
T 3l4e_A 90 TFFLLQELKRT 100 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHC
Confidence 88888888864
No 194
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=53.07 E-value=12 Score=31.00 Aligned_cols=45 Identities=13% Similarity=-0.009 Sum_probs=28.1
Q ss_pred CCeEEE--EecCCCHHH-HHHHHhcCCCeEEeCCCCH-HHHHHHHHHHHH
Q 023816 157 EIPVVI--MSSENILAR-IDRCLEDGAEDFIVKPVKL-SDVKRIKDYLTR 202 (276)
Q Consensus 157 ~ipiV~--ls~~~~~~~-~~~al~~Ga~d~l~KPv~~-~~L~~~~~~l~~ 202 (276)
+.|+++ +.. +..+. .+.+.++||+....-+... ..+.++++.+.+
T Consensus 53 ~~~i~~~l~~~-di~~~~~~~a~~~Gad~v~vh~~~~~~~~~~~~~~~~~ 101 (207)
T 3ajx_A 53 DKIVFADMKTM-DAGELEADIAFKAGADLVTVLGSADDSTIAGAVKAAQA 101 (207)
T ss_dssp TSEEEEEEEEC-SCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEEEec-CccHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHH
Confidence 567764 443 32444 7889999998877666544 445555555543
No 195
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=52.00 E-value=27 Score=31.03 Aligned_cols=63 Identities=16% Similarity=0.269 Sum_probs=49.0
Q ss_pred eCCHHHHHHHHHHHhh-CCCEEEE------E--CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC---CCHHHHH
Q 023816 36 DDSFVDRKVIERLLTI-SSCKVTA------V--DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG---MTGYELL 103 (276)
Q Consensus 36 dD~~~~~~~L~~~L~~-~g~~v~~------a--~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~---~~G~ell 103 (276)
+|..++...++++++. .|..|+. + .+..+|++.+ ....++=||+.=+-+. .+|++.+
T Consensus 100 ~dg~iD~~~~~~Li~~a~~~~vTFHRAFD~~~~~d~~~ale~L-----------~~lGv~rILTSG~~~~~~a~~g~~~L 168 (224)
T 2bdq_A 100 SNNHIDTEAIEQLLPATQGLPLVFHMAFDVIPKSDQKKSIDQL-----------VALGFTRILLHGSSNGEPIIENIKHI 168 (224)
T ss_dssp TTSSBCHHHHHHHHHHHTTCCEEECGGGGGSCTTTHHHHHHHH-----------HHTTCCEEEECSCSSCCCGGGGHHHH
T ss_pred CCCCcCHHHHHHHHHHhCCCeEEEECchhccCCcCHHHHHHHH-----------HHcCCCEEECCCCCCCCcHHHHHHHH
Confidence 5777888888888864 4677776 4 7788999998 5668999998865554 7899999
Q ss_pred HHHHhh
Q 023816 104 KKIKVT 109 (276)
Q Consensus 104 ~~Ir~~ 109 (276)
+++.++
T Consensus 169 ~~Lv~~ 174 (224)
T 2bdq_A 169 KALVEY 174 (224)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999753
No 196
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=51.84 E-value=51 Score=29.51 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=30.8
Q ss_pred CeEEEEec--CCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 023816 158 IPVVIMSS--ENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 202 (276)
Q Consensus 158 ipiV~ls~--~~~~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~~ 202 (276)
+-+|++.. ....+....|+++|..=|+.||+ +.++..++++...+
T Consensus 82 vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~ 130 (330)
T 4ew6_A 82 IDAVSLCMPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEALANK 130 (330)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCcHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHh
Confidence 44444433 33455677899999999999997 56677666665543
No 197
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=51.75 E-value=38 Score=28.68 Aligned_cols=37 Identities=14% Similarity=0.335 Sum_probs=29.4
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe------CCCCHHHH
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV------KPVKLSDV 193 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~------KPv~~~~L 193 (276)
.+|||+..+-...+++.++++.||+..+. .|.+..++
T Consensus 196 ~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~~~~ 238 (252)
T 1ka9_F 196 GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKL 238 (252)
T ss_dssp SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHH
T ss_pred CCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHH
Confidence 58999888888889999999999999876 24555554
No 198
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=50.59 E-value=79 Score=23.93 Aligned_cols=108 Identities=18% Similarity=0.176 Sum_probs=62.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
+.++++++.+.+. .+.++++.+..+..+.. .-+.++..+.+ . ..|++++-.. .+.-|.-+++.+
T Consensus 31 ~~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~g~~~~~~~~~~~-----------~--~adv~v~ps~-~e~~~~~~~Eam 95 (166)
T 3qhp_A 31 QDIVLLLKGKGPD-EKKIKLLAQKLGVKAEFGFVNSNELLEIL-----------K--TCTLYVHAAN-VESEAIACLEAI 95 (166)
T ss_dssp GGEEEEEECCSTT-HHHHHHHHHHHTCEEECCCCCHHHHHHHH-----------T--TCSEEEECCC-SCCCCHHHHHHH
T ss_pred CCeEEEEEeCCcc-HHHHHHHHHHcCCeEEEeecCHHHHHHHH-----------H--hCCEEEECCc-ccCccHHHHHHH
Confidence 4788888887643 56677777777765554 22345555555 1 3577775332 233455666666
Q ss_pred HhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCC-eEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 107 KVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREI-PVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 107 r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-piV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.. .+ |||..+.... ..+.+..| .++.
T Consensus 96 a~------------------------------------------------G~vPvi~~~~~~~---~~~~~~~~--~~~~ 122 (166)
T 3qhp_A 96 SV------------------------------------------------GIVPVIANSPLSA---TRQFALDE--RSLF 122 (166)
T ss_dssp HT------------------------------------------------TCCEEEECCTTCG---GGGGCSSG--GGEE
T ss_pred hc------------------------------------------------CCCcEEeeCCCCc---hhhhccCC--ceEE
Confidence 53 65 8877332221 22233333 3378
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 023816 186 KPVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 186 KPv~~~~L~~~~~~l~~~ 203 (276)
.|-+.+++.+.+..+...
T Consensus 123 ~~~~~~~l~~~i~~l~~~ 140 (166)
T 3qhp_A 123 EPNNAKDLSAKIDWWLEN 140 (166)
T ss_dssp CTTCHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHhC
Confidence 888999997777776553
No 199
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=50.57 E-value=61 Score=28.73 Aligned_cols=47 Identities=11% Similarity=0.122 Sum_probs=32.7
Q ss_pred ccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 152 ~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
+.....+|||+... ....+.++.|..+++..|-+.+++.+.+..+..
T Consensus 344 Eama~G~PvI~~~~----~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 390 (438)
T 3c48_A 344 EAQASGTPVIAARV----GGLPIAVAEGETGLLVDGHSPHAWADALATLLD 390 (438)
T ss_dssp HHHHTTCCEEEESC----TTHHHHSCBTTTEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEecCC----CChhHHhhCCCcEEECCCCCHHHHHHHHHHHHc
Confidence 33444788876432 234456778888999999999999777766654
No 200
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=50.54 E-value=53 Score=27.85 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=20.1
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++||++ .+.-..+.+.++.++|++.++.
T Consensus 173 ~~pi~v-~GGI~~~ni~~~~~aGaD~vvv 200 (228)
T 1h1y_A 173 SLDIEV-DGGLGPSTIDVAASAGANCIVA 200 (228)
T ss_dssp TSEEEE-ESSCSTTTHHHHHHHTCCEEEE
T ss_pred CCCEEE-ECCcCHHHHHHHHHcCCCEEEE
Confidence 567654 4444557788888999998876
No 201
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=50.08 E-value=99 Score=25.23 Aligned_cols=51 Identities=14% Similarity=0.051 Sum_probs=28.7
Q ss_pred HhhCCCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 49 LTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 49 L~~~g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
|...+.-.. ...+.+++.+.+... ....+++|-+.+..| ++.+.++.+|+.
T Consensus 7 ~~~~~~i~~~~~~~~~~~~~~~~~~--------~~~G~~~iev~~~~~--~~~~~i~~ir~~ 58 (205)
T 1wa3_A 7 FKKHKIVAVLRANSVEEAKEKALAV--------FEGGVHLIEITFTVP--DADTVIKELSFL 58 (205)
T ss_dssp HHHHCEEEEECCSSHHHHHHHHHHH--------HHTTCCEEEEETTST--THHHHHHHTHHH
T ss_pred HhhCCEEEEEecCCHHHHHHHHHHH--------HHCCCCEEEEeCCCh--hHHHHHHHHHHH
Confidence 444443322 355666666655322 233567776655544 577888888864
No 202
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=50.02 E-value=82 Score=27.71 Aligned_cols=33 Identities=12% Similarity=0.190 Sum_probs=21.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHH-hhCCCEEEEE
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLL-TISSCKVTAV 59 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L-~~~g~~v~~a 59 (276)
+.+++|.||.--..-+..+..+. +..+++++++
T Consensus 6 ~~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav 39 (346)
T 3cea_A 6 RKPLRAAIIGLGRLGERHARHLVNKIQGVKLVAA 39 (346)
T ss_dssp CCCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEE
T ss_pred CCcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEE
Confidence 45689999987666555556555 4457776653
No 203
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=49.91 E-value=58 Score=28.44 Aligned_cols=68 Identities=18% Similarity=0.045 Sum_probs=44.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhC-----CCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC-----
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTIS-----SCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM----- 97 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~-----g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~----- 97 (276)
..+|..||=++...+..++.+... .-++. ...++.+.+... ...||+|++|.--|..
T Consensus 99 ~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~------------~~~fD~Ii~d~~~~~~~~~~l 166 (275)
T 1iy9_A 99 VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS------------ENQYDVIMVDSTEPVGPAVNL 166 (275)
T ss_dssp CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC------------CSCEEEEEESCSSCCSCCCCC
T ss_pred CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC------------CCCeeEEEECCCCCCCcchhh
Confidence 468999999999999998887431 12333 355666555432 3579999999855432
Q ss_pred CHHHHHHHHHh
Q 023816 98 TGYELLKKIKV 108 (276)
Q Consensus 98 ~G~ell~~Ir~ 108 (276)
...++++.+++
T Consensus 167 ~~~~~~~~~~~ 177 (275)
T 1iy9_A 167 FTKGFYAGIAK 177 (275)
T ss_dssp STTHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 13566666654
No 204
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=49.83 E-value=22 Score=29.29 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=21.0
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++||++..+-+ .+.+.+++++|++.+..
T Consensus 150 ~~pvia~GGI~-~~~~~~~~~~Ga~~v~v 177 (205)
T 1wa3_A 150 NVKFVPTGGVN-LDNVCEWFKAGVLAVGV 177 (205)
T ss_dssp TCEEEEBSSCC-TTTHHHHHHHTCSCEEE
T ss_pred CCcEEEcCCCC-HHHHHHHHHCCCCEEEE
Confidence 57777665544 66888999999988765
No 205
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=49.64 E-value=47 Score=28.68 Aligned_cols=45 Identities=11% Similarity=0.165 Sum_probs=31.2
Q ss_pred cCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 153 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 153 ~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
.....+|||+.-. ....+.+..| .+++..|-+.+++.+.+..+..
T Consensus 299 a~a~G~PvI~~~~----~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~ 343 (394)
T 3okp_A 299 AQACGVPVIAGTS----GGAPETVTPA-TGLVVEGSDVDKLSELLIELLD 343 (394)
T ss_dssp HHHTTCCEEECSS----TTGGGGCCTT-TEEECCTTCHHHHHHHHHHHHT
T ss_pred HHHcCCCEEEeCC----CChHHHHhcC-CceEeCCCCHHHHHHHHHHHHh
Confidence 3344788887322 2334556778 9999999999999777776654
No 206
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=48.93 E-value=1.3e+02 Score=27.81 Aligned_cols=29 Identities=10% Similarity=0.295 Sum_probs=24.9
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+|||+..+=....++.+++..||+....
T Consensus 256 ~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 256 NICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp SCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred CceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 58988877777889999999999988765
No 207
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=48.74 E-value=77 Score=28.25 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=29.2
Q ss_pred CeEEEEe--cCCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 023816 158 IPVVIMS--SENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 202 (276)
Q Consensus 158 ipiV~ls--~~~~~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~~ 202 (276)
+-+|++. .....+....|+++|..=|+.||+ +.++..++.+...+
T Consensus 76 ~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~ 124 (354)
T 3q2i_A 76 ADIVILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADK 124 (354)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred CCEEEECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHH
Confidence 4444443 333455677899999999999996 45666666555443
No 208
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=48.68 E-value=63 Score=32.29 Aligned_cols=70 Identities=10% Similarity=0.161 Sum_probs=49.4
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC-CC-H
Q 023816 29 EVHVLAV----DDSFVDRKVIERLLTISSCKVTAV---DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-MT-G 99 (276)
Q Consensus 29 ~~~VLIV----dD~~~~~~~L~~~L~~~g~~v~~a---~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~-~~-G 99 (276)
.-+||+. |-+.+-...+..+|+..||+|+.. ...++.++.+ ...++|+|.+...|.. +. -
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa-----------~~~~~diVgLS~l~t~~~~~m 166 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTA-----------KEVNADLIGLSGLITPSLDEM 166 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHH-----------HHHTCSEEEEECCSTHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEEecCCCCHHHH
Confidence 4577777 556677788899999999999863 3566667766 5568999999986643 11 2
Q ss_pred HHHHHHHHhh
Q 023816 100 YELLKKIKVT 109 (276)
Q Consensus 100 ~ell~~Ir~~ 109 (276)
-++++.|++.
T Consensus 167 ~~~i~~Lr~~ 176 (579)
T 3bul_A 167 VNVAKEMERQ 176 (579)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 2466667653
No 209
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=48.01 E-value=93 Score=27.40 Aligned_cols=76 Identities=20% Similarity=0.233 Sum_probs=50.4
Q ss_pred CCCceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeE
Q 023816 81 DGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPV 160 (276)
Q Consensus 81 ~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipi 160 (276)
....+|.|++|++=-..+.-.+...++.... ...++
T Consensus 34 ~~~g~D~vilDlEhav~~~~k~~~~l~a~~~--------------------------------------------~~~~~ 69 (261)
T 3qz6_A 34 AEAGLDYFIVDCEHAAYTFREINHLVSVAKN--------------------------------------------AGVSV 69 (261)
T ss_dssp HHTTCSEEEEESSSSCCCHHHHHHHHHHHHH--------------------------------------------HTCEE
T ss_pred hcCCcCEEEEeccCCCCCHHHHHHHHHHHhh--------------------------------------------cCCeE
Confidence 3457999999997766666555555553110 13455
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCC-CHHHHHHHHHHH
Q 023816 161 VIMSSENILARIDRCLEDGAEDFIVKPV-KLSDVKRIKDYL 200 (276)
Q Consensus 161 V~ls~~~~~~~~~~al~~Ga~d~l~KPv-~~~~L~~~~~~l 200 (276)
++=....+..++..+++.|++..+..=+ +.++++++++.+
T Consensus 70 ~VRVn~~~~~di~~~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 70 LVRIPQVDRAHVQRLLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp EEECSSCCHHHHHHHHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 5555556667899999999988765444 567777776655
No 210
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=47.78 E-value=43 Score=28.98 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=21.3
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
+.+ |.+.+.-..+.+.++.++||+-++.
T Consensus 169 ~~~-I~VdGGI~~~t~~~~~~aGAd~~Vv 196 (228)
T 3ovp_A 169 SLD-IEVDGGVGPDTVHKCAEAGANMIVS 196 (228)
T ss_dssp TCE-EEEESSCSTTTHHHHHHHTCCEEEE
T ss_pred CCC-EEEeCCcCHHHHHHHHHcCCCEEEE
Confidence 344 4566666778899999999998775
No 211
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=47.72 E-value=1.2e+02 Score=26.61 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=30.5
Q ss_pred CeEEEEec--CCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 023816 158 IPVVIMSS--ENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 202 (276)
Q Consensus 158 ipiV~ls~--~~~~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~~ 202 (276)
+-+|++.. ....+....|+++|..=|+.||+ +.++..++.+...+
T Consensus 63 ~D~V~i~tp~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~ 111 (325)
T 2ho3_A 63 FDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEK 111 (325)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHH
T ss_pred CCEEEEeCChHHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHH
Confidence 44444433 33456778899999988999998 56666666665543
No 212
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=47.18 E-value=30 Score=28.32 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 40 VDRKVIERLLTISSCKVTA---VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 40 ~~~~~L~~~L~~~g~~v~~---a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
.+...|.+.|+..|++|.. +.+..+.+...-... .....+|+||+-=
T Consensus 40 ~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~------~a~~~~DlVittG 89 (178)
T 3iwt_A 40 ESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDA------LSIDEVDVIISTG 89 (178)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHH------HTCTTCCEEEEES
T ss_pred chHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHH------HhcCCCCEEEecC
Confidence 4667899999999998764 555444333211000 0345689999764
No 213
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=47.17 E-value=30 Score=29.77 Aligned_cols=34 Identities=12% Similarity=-0.094 Sum_probs=23.6
Q ss_pred CccEEEEEeCC--------------------HHHHHHHHHHHhhCCCEEEEECC
Q 023816 28 EEVHVLAVDDS--------------------FVDRKVIERLLTISSCKVTAVDS 61 (276)
Q Consensus 28 ~~~~VLIVdD~--------------------~~~~~~L~~~L~~~g~~v~~a~~ 61 (276)
.++|||+|-.. ......+.+.|.+.|++|..+..
T Consensus 2 ~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~ 55 (342)
T 2iuy_A 2 RPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGA 55 (342)
T ss_dssp -CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESC
T ss_pred CccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEec
Confidence 45899999876 12344566677788999988654
No 214
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=46.94 E-value=78 Score=26.31 Aligned_cols=66 Identities=11% Similarity=0.116 Sum_probs=45.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCC--EEEE-ECCHHHHHH-HhcccccccccCCCCCceeEEEEecCCCCCCHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVTA-VDSGRRALQ-FLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~--~v~~-a~~g~~al~-~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~ 104 (276)
..+|..||-++...+..++.++..|+ ++.. ..+..+.+. .+ ...||+|++|... .+-.++++
T Consensus 95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~------------~~~fD~V~~~~~~--~~~~~~l~ 160 (232)
T 3ntv_A 95 DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN------------DKVYDMIFIDAAK--AQSKKFFE 160 (232)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT------------TSCEEEEEEETTS--SSHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc------------cCCccEEEEcCcH--HHHHHHHH
Confidence 56899999999999999999988875 3443 555554444 33 3479999999643 23344666
Q ss_pred HHHh
Q 023816 105 KIKV 108 (276)
Q Consensus 105 ~Ir~ 108 (276)
.+.+
T Consensus 161 ~~~~ 164 (232)
T 3ntv_A 161 IYTP 164 (232)
T ss_dssp HHGG
T ss_pred HHHH
Confidence 6653
No 215
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=46.81 E-value=1.9e+02 Score=27.08 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=21.9
Q ss_pred eEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 159 PVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 159 piV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
|||+--+-....++.+|+++||+....
T Consensus 201 PVIAdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 201 SIVADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp EEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 777777767889999999999976543
No 216
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=46.42 E-value=57 Score=27.45 Aligned_cols=54 Identities=11% Similarity=-0.109 Sum_probs=41.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecC
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC 93 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~ 93 (276)
+-+|.+||-++...+..++..+..+..+.. ..+.++.+..+ ....||.|+.|..
T Consensus 83 ~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~-----------~~~~FD~i~~D~~ 137 (236)
T 3orh_A 83 IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTL-----------PDGHFDGILYDTY 137 (236)
T ss_dssp EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGS-----------CTTCEEEEEECCC
T ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccc-----------cccCCceEEEeee
Confidence 347889999999999999988888876664 55665554433 5567999999864
No 217
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=46.35 E-value=82 Score=28.34 Aligned_cols=45 Identities=24% Similarity=0.299 Sum_probs=29.7
Q ss_pred CeEEEEe--cCCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 023816 158 IPVVIMS--SENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 202 (276)
Q Consensus 158 ipiV~ls--~~~~~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~~ 202 (276)
+-+|++. .....+....|+++|..=|+.||+ +.++..++++...+
T Consensus 66 ~D~V~i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~ 114 (359)
T 3e18_A 66 VDAVLIATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKR 114 (359)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHH
T ss_pred CCEEEEcCCcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHH
Confidence 3444443 333456778899999999999997 45566666655443
No 218
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=46.24 E-value=26 Score=30.25 Aligned_cols=43 Identities=12% Similarity=0.054 Sum_probs=26.6
Q ss_pred CeEE--EEecCCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHH
Q 023816 158 IPVV--IMSSENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLT 201 (276)
Q Consensus 158 ipiV--~ls~~~~~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~ 201 (276)
.|+. +|+. +.......+.++||+....-.. ..+...+.++.+.
T Consensus 63 ~~~~vhlmv~-dp~~~i~~~~~aGadgv~vh~e~~~~~~~~~~~~~i~ 109 (230)
T 1tqj_A 63 KTLDVHLMIV-EPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIR 109 (230)
T ss_dssp SEEEEEEESS-SGGGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHH
T ss_pred CcEEEEEEcc-CHHHHHHHHHHcCCCEEEECcccccchhHHHHHHHHH
Confidence 3444 6663 3345678899999998877654 3334455555544
No 219
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=46.04 E-value=51 Score=28.31 Aligned_cols=44 Identities=9% Similarity=0.185 Sum_probs=30.6
Q ss_pred CCCeEEEEecCCCHHHHHHHHhcCCCeEEeC-CCCHHHHHHHHHHHHHh
Q 023816 156 REIPVVIMSSENILARIDRCLEDGAEDFIVK-PVKLSDVKRIKDYLTRD 203 (276)
Q Consensus 156 ~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K-Pv~~~~L~~~~~~l~~~ 203 (276)
..+|||+....... +.++.|-.+++.. |.+.+++.+.+..+...
T Consensus 293 ~G~Pvi~~~~~~~~----e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~ 337 (374)
T 2iw1_A 293 AGLPVLTTAVCGYA----HYIADANCGTVIAEPFSQEQLNEVLRKALTQ 337 (374)
T ss_dssp HTCCEEEETTSTTT----HHHHHHTCEEEECSSCCHHHHHHHHHHHHHC
T ss_pred CCCCEEEecCCCch----hhhccCCceEEeCCCCCHHHHHHHHHHHHcC
Confidence 37888875443333 3455667789997 88999997777776543
No 220
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=45.84 E-value=1.8e+02 Score=26.68 Aligned_cols=32 Identities=6% Similarity=0.049 Sum_probs=26.3
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeE-EeCCC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDF-IVKPV 188 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~-l~KPv 188 (276)
.+|||+--+-....++.+|+..||+.. +-+++
T Consensus 223 ~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 223 KGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp TCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 589888888888999999999999876 33454
No 221
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=45.80 E-value=77 Score=28.83 Aligned_cols=69 Identities=12% Similarity=0.059 Sum_probs=44.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhC--CC---EEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC--C--
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTIS--SC---KVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM--T-- 98 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~--g~---~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~--~-- 98 (276)
..+|..||=++...+..++.+... |+ ++. ...++.+.+..+ ....||+|++|..-|.. .
T Consensus 144 ~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~-----------~~~~fDlIi~d~~~p~~~~~~l 212 (334)
T 1xj5_A 144 IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA-----------AEGSYDAVIVDSSDPIGPAKEL 212 (334)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS-----------CTTCEEEEEECCCCTTSGGGGG
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhc-----------cCCCccEEEECCCCccCcchhh
Confidence 468999999999999988887642 22 333 356666655433 24579999999754432 1
Q ss_pred -HHHHHHHHHh
Q 023816 99 -GYELLKKIKV 108 (276)
Q Consensus 99 -G~ell~~Ir~ 108 (276)
-.++++.+++
T Consensus 213 ~~~~~l~~~~~ 223 (334)
T 1xj5_A 213 FEKPFFQSVAR 223 (334)
T ss_dssp GSHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 1356666654
No 222
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=45.63 E-value=1.2e+02 Score=25.48 Aligned_cols=73 Identities=11% Similarity=0.056 Sum_probs=50.2
Q ss_pred hCCCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCC-C-CHHHHHHHHHhhCCCCcccchheehhhhhh
Q 023816 51 ISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-M-TGYELLKKIKVTTPFNFLYSTIIVFLNLQN 127 (276)
Q Consensus 51 ~~g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~-~-~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~ 127 (276)
..|..+. .+.+..|+.+.+ +...|.|-+ -|. . -|.+.++.++...|
T Consensus 102 ~~g~~~i~G~~t~~e~~~A~------------~~Gad~v~~---fpa~~~gG~~~lk~l~~~~~---------------- 150 (207)
T 2yw3_A 102 ARGVPYLPGVLTPTEVERAL------------ALGLSALKF---FPAEPFQGVRVLRAYAEVFP---------------- 150 (207)
T ss_dssp HHTCCEEEEECSHHHHHHHH------------HTTCCEEEE---TTTTTTTHHHHHHHHHHHCT----------------
T ss_pred HhCCCEEecCCCHHHHHHHH------------HCCCCEEEE---ecCccccCHHHHHHHHhhCC----------------
Confidence 3555443 478888887765 225677766 343 2 38899999997665
Q ss_pred hhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 128 LFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
++|++. ++.-..+...+.+++|++.+.
T Consensus 151 -----------------------------~ipvva-iGGI~~~n~~~~l~aGa~~va 177 (207)
T 2yw3_A 151 -----------------------------EVRFLP-TGGIKEEHLPHYAALPNLLAV 177 (207)
T ss_dssp -----------------------------TCEEEE-BSSCCGGGHHHHHTCSSBSCE
T ss_pred -----------------------------CCcEEE-eCCCCHHHHHHHHhCCCcEEE
Confidence 688775 455557888899999988764
No 223
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=45.19 E-value=30 Score=30.97 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=34.7
Q ss_pred CCeEEEEecCC------CHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSEN------ILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 157 ~ipiV~ls~~~------~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
.+|+|+|+=.+ ......+|.++|++++|.--+..++.......+..
T Consensus 88 ~~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~~~~~~~~ 139 (252)
T 3tha_A 88 KKALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDDLIKECER 139 (252)
T ss_dssp SSEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHHHHHHHHH
T ss_pred CCCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 38999998543 45577889999999999998887776555555443
No 224
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=45.18 E-value=1.6e+02 Score=25.84 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=58.4
Q ss_pred HHHHHhhCCC-EEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehh
Q 023816 45 IERLLTISSC-KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFL 123 (276)
Q Consensus 45 L~~~L~~~g~-~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~ 123 (276)
+.+.|+..+. -|....+.+++++.+... -....++|=+.+. .-++.+.+++|++..|
T Consensus 27 ~~~~l~~~~vv~Vir~~~~~~a~~~a~al--------~~gGi~~iEvt~~--t~~a~e~I~~l~~~~~------------ 84 (232)
T 4e38_A 27 INNQLKALKVIPVIAIDNAEDIIPLGKVL--------AENGLPAAEITFR--SDAAVEAIRLLRQAQP------------ 84 (232)
T ss_dssp HHHHHHHHCEEEEECCSSGGGHHHHHHHH--------HHTTCCEEEEETT--STTHHHHHHHHHHHCT------------
T ss_pred HHHHHHhCCEEEEEEcCCHHHHHHHHHHH--------HHCCCCEEEEeCC--CCCHHHHHHHHHHhCC------------
Confidence 3445555564 555677888887776322 2335666655554 5578999999998655
Q ss_pred hhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHH
Q 023816 124 NLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV 193 (276)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L 193 (276)
.+.| -.-.--..+..+.|+++|| +|+.-|..-.++
T Consensus 85 ---------------------------------~~~i-GaGTVlt~~~a~~Ai~AGA-~fIvsP~~~~~v 119 (232)
T 4e38_A 85 ---------------------------------EMLI-GAGTILNGEQALAAKEAGA-TFVVSPGFNPNT 119 (232)
T ss_dssp ---------------------------------TCEE-EEECCCSHHHHHHHHHHTC-SEEECSSCCHHH
T ss_pred ---------------------------------CCEE-eECCcCCHHHHHHHHHcCC-CEEEeCCCCHHH
Confidence 3322 2222345788999999999 566667554554
No 225
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=45.10 E-value=83 Score=27.91 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=29.4
Q ss_pred CeEEEEe--cCCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 023816 158 IPVVIMS--SENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 202 (276)
Q Consensus 158 ipiV~ls--~~~~~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~~ 202 (276)
+-+|+++ .....+....|+++|..=|+.||+ +.++..++.+...+
T Consensus 65 ~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~ 113 (344)
T 3ezy_A 65 VDAVLVCSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKK 113 (344)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCcchHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444443 333455677899999999999995 55666666655443
No 226
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=45.03 E-value=93 Score=27.67 Aligned_cols=68 Identities=22% Similarity=0.099 Sum_probs=41.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhh--C---CCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC-----
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTI--S---SCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM----- 97 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~--~---g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~----- 97 (276)
..+|..||=++...+..++.+.. . .-++. ...++.+.+... ...||+|++|..-|..
T Consensus 119 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~------------~~~fD~Ii~d~~~~~~~~~~l 186 (304)
T 2o07_A 119 VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN------------QDAFDVIITDSSDPMGPAESL 186 (304)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC------------SSCEEEEEEECC---------
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhC------------CCCceEEEECCCCCCCcchhh
Confidence 46899999999999998888764 1 22333 356666554432 3479999999754421
Q ss_pred CHHHHHHHHHh
Q 023816 98 TGYELLKKIKV 108 (276)
Q Consensus 98 ~G~ell~~Ir~ 108 (276)
...++++.+++
T Consensus 187 ~~~~~l~~~~~ 197 (304)
T 2o07_A 187 FKESYYQLMKT 197 (304)
T ss_dssp --CHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 12345555554
No 227
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=44.73 E-value=1.3e+02 Score=26.53 Aligned_cols=69 Identities=16% Similarity=0.060 Sum_probs=40.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhh-----CCCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCH---
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTI-----SSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG--- 99 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~-----~g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G--- 99 (276)
..+|..||=++...+..++.+.. ..-++. ...++.+.+... ....||+|++|...|....
T Consensus 119 ~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-----------~~~~fDvIi~d~~~~~~~~~~l 187 (304)
T 3bwc_A 119 VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQT-----------PDNTYDVVIIDTTDPAGPASKL 187 (304)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSS-----------CTTCEEEEEEECC---------
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhc-----------cCCceeEEEECCCCccccchhh
Confidence 35788899888888888877632 111232 355665544321 2457999999986554211
Q ss_pred --HHHHHHHHh
Q 023816 100 --YELLKKIKV 108 (276)
Q Consensus 100 --~ell~~Ir~ 108 (276)
.++++.+++
T Consensus 188 ~~~~~l~~~~~ 198 (304)
T 3bwc_A 188 FGEAFYKDVLR 198 (304)
T ss_dssp CCHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 466777665
No 228
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=44.69 E-value=67 Score=26.42 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=27.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHH
Q 023816 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRR 64 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~ 64 (276)
+|+|||=---+...+.+.|++.|+++..+.+.++
T Consensus 4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~ 37 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIERLGYAVTISRDPQV 37 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHH
T ss_pred EEEEEECCCChHHHHHHHHHHCCCEEEEECCHHH
Confidence 6899986666778888999999999998887654
No 229
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=44.66 E-value=51 Score=26.37 Aligned_cols=56 Identities=16% Similarity=0.127 Sum_probs=42.7
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 25 SDTEEVHVLAVDDSFVDRKVIERLLTISSC--KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 25 ~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~--~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
.+-.+.+|.+. ........++.++...|+ ++..+.+..++++.+ ..++.|.++.|.
T Consensus 144 ~dL~g~~i~~~-~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l-----------~~g~vDa~~~~~ 201 (259)
T 2v25_A 144 ADMKGANIGVA-QAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAAL-----------DAKRVDAFSVDK 201 (259)
T ss_dssp GGCTTCEEEEE-TTCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHH-----------HTTSSSEEEEEH
T ss_pred HHhCCCEEEEe-cCCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHH-----------HcCCCcEEEecH
Confidence 44456677665 444566778888887775 677789999999999 678899999885
No 230
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=44.58 E-value=54 Score=26.54 Aligned_cols=31 Identities=26% Similarity=0.437 Sum_probs=22.3
Q ss_pred CccEEEEEeCCHHH----------HHHHHHHHhhCCCEEEE
Q 023816 28 EEVHVLAVDDSFVD----------RKVIERLLTISSCKVTA 58 (276)
Q Consensus 28 ~~~~VLIVdD~~~~----------~~~L~~~L~~~g~~v~~ 58 (276)
++++|+++.|+... ...|.+.|...++.+..
T Consensus 4 ~~~~i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~~~~v~~ 44 (215)
T 2vpt_A 4 KTIKIMPVGDSCTEGMGGGEMGSYRTELYRLLTQAGLSIDF 44 (215)
T ss_dssp CEEEEEEEESHHHHTCSSSTTCTTHHHHHHHHHHTTCEEEE
T ss_pred CceEEEecccccccCCCCCCCCchHHHHHHHHHHcCCceEE
Confidence 46788888887653 56788888877776544
No 231
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=44.55 E-value=65 Score=26.60 Aligned_cols=50 Identities=12% Similarity=-0.065 Sum_probs=37.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEe
Q 023816 31 HVLAVDDSFVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D 91 (276)
+|..||-++...+..++..+..+.++.. ..+.++.+.-+ ....||+|++|
T Consensus 85 ~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~-----------~~~~fD~V~~d 135 (236)
T 1zx0_A 85 EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTL-----------PDGHFDGILYD 135 (236)
T ss_dssp EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGS-----------CTTCEEEEEEC
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhccc-----------CCCceEEEEEC
Confidence 7899999999999999988877776664 55655433222 45679999995
No 232
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=44.27 E-value=1.5e+02 Score=27.24 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=20.0
Q ss_pred eEEEEecCCCHHHHHHHHhcCCCeE
Q 023816 159 PVVIMSSENILARIDRCLEDGAEDF 183 (276)
Q Consensus 159 piV~ls~~~~~~~~~~al~~Ga~d~ 183 (276)
..+..|+.-+.+.+.+..+.|+|-+
T Consensus 254 v~ieaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 254 AVLEVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp EEEEEESSCSTTTHHHHHHTTCSEE
T ss_pred CeEEEEcCCCHHHHHHHHHcCCCEE
Confidence 5667888888888888889999544
No 233
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Probab=44.26 E-value=61 Score=28.38 Aligned_cols=46 Identities=11% Similarity=0.194 Sum_probs=29.8
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 202 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~~ 202 (276)
++-+|........+....|+++|..=++.||+ +.++..++.+...+
T Consensus 71 D~V~i~tp~~~h~~~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~ 118 (315)
T 3c1a_A 71 EAVIIATPPATHAEITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKA 118 (315)
T ss_dssp CEEEEESCGGGHHHHHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHH
T ss_pred CEEEEeCChHHHHHHHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHH
Confidence 33344334444456777899999888899998 45666666555443
No 234
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=44.24 E-value=55 Score=28.96 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=31.0
Q ss_pred CCeEEEEecC--CCHHHHHHHHhcCCCeEEeCCCC--HHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSE--NILARIDRCLEDGAEDFIVKPVK--LSDVKRIKDYLTR 202 (276)
Q Consensus 157 ~ipiV~ls~~--~~~~~~~~al~~Ga~d~l~KPv~--~~~L~~~~~~l~~ 202 (276)
++-+|+++.. ...+....|+++|..=|+.||+. .++.+++++...+
T Consensus 86 ~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 135 (350)
T 4had_A 86 VIDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDR 135 (350)
T ss_dssp SCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHH
T ss_pred CCCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHH
Confidence 3445544433 34567889999999999999984 5566666655443
No 235
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=44.16 E-value=1.2e+02 Score=24.02 Aligned_cols=78 Identities=23% Similarity=0.253 Sum_probs=40.5
Q ss_pred CCCccEEEEEeCCHHH--HHHHHHHHhhCCCEEEE-E-C---CHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC-
Q 023816 26 DTEEVHVLAVDDSFVD--RKVIERLLTISSCKVTA-V-D---SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM- 97 (276)
Q Consensus 26 ~~~~~~VLIVdD~~~~--~~~L~~~L~~~g~~v~~-a-~---~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~- 97 (276)
.....+||++.|+... ...+++.|... ..|.. . . .....++.+.... ...+||+|++.+-.-+.
T Consensus 17 ~~~~prVl~iGDSit~G~~~~l~~~l~~~-~~v~~~~~~~~~~~~~~~~~~~~~~-------~~~~pd~Vvi~~G~ND~~ 88 (200)
T 4h08_A 17 KTDLPHVLLIGNSITRGYYGKVEAALKEK-AYVGRLSNSKSVGDPALIEELAVVL-------KNTKFDVIHFNNGLHGFD 88 (200)
T ss_dssp CCSSCEEEEEESHHHHHHHHHHHHHTTTT-CEEEEEEESCCTTCHHHHHHHHHHH-------HHSCCSEEEECCCSSCTT
T ss_pred cCCCCeEEEEchhHHhhhHHHHHHHhccC-CeEEEEeccCCccHHHHHHHHHHHH-------hcCCCCeEEEEeeeCCCC
Confidence 3344599999999764 34466666543 23332 1 1 1123333332111 34579999986644332
Q ss_pred -CH-------HHHHHHHHhhCC
Q 023816 98 -TG-------YELLKKIKVTTP 111 (276)
Q Consensus 98 -~G-------~ell~~Ir~~~p 111 (276)
+- -++++++|+..|
T Consensus 89 ~~~~~~~~~l~~ii~~l~~~~p 110 (200)
T 4h08_A 89 YTEEEYDKSFPKLIKIIRKYAP 110 (200)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHHhhhCC
Confidence 11 235566666555
No 236
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=44.11 E-value=40 Score=27.17 Aligned_cols=55 Identities=11% Similarity=-0.011 Sum_probs=35.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCC
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp 95 (276)
++|||..-.-..-..+.+.|...|++|..+....+.++.+ ......++.+|+.=+
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-----------~~~~~~~~~~D~~d~ 55 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR-----------LGATVATLVKEPLVL 55 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-----------TCTTSEEEECCGGGC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccc-----------cCCCceEEecccccc
Confidence 4688888766666666666767799998865444444444 223456666666433
No 237
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=44.07 E-value=96 Score=25.57 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=23.7
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+|+++...-...+...+++++||+....
T Consensus 77 ~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 77 SIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp SSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 48888877777888889999999887764
No 238
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=44.00 E-value=1.5e+02 Score=26.55 Aligned_cols=68 Identities=15% Similarity=0.055 Sum_probs=44.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhC-----CCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC-----
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTIS-----SCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM----- 97 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~-----g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~----- 97 (276)
..+|..||=++...+..++.+... .-++. ...++.+.+... ...||+|++|...|..
T Consensus 140 ~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------------~~~fDvIi~d~~~p~~~~~~l 207 (321)
T 2pt6_A 140 VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------------TNTYDVIIVDSSDPIGPAETL 207 (321)
T ss_dssp CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------------CSCEEEEEEECCCSSSGGGGG
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc------------CCCceEEEECCcCCCCcchhh
Confidence 468999999999999988887652 11333 356766655432 3479999999754421
Q ss_pred CHHHHHHHHHh
Q 023816 98 TGYELLKKIKV 108 (276)
Q Consensus 98 ~G~ell~~Ir~ 108 (276)
...++++.+++
T Consensus 208 ~~~~~l~~~~~ 218 (321)
T 2pt6_A 208 FNQNFYEKIYN 218 (321)
T ss_dssp SSHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 12466676665
No 239
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=43.93 E-value=43 Score=32.39 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=43.1
Q ss_pred CceeEEEEecCCCCCC-HHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEE
Q 023816 83 LKVDLIITDYCMPGMT-GYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVV 161 (276)
Q Consensus 83 ~~~DlIL~D~~mp~~~-G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV 161 (276)
..+|+|.+|..-+... -.+.++++|+..| ++||+
T Consensus 242 aG~d~I~id~a~g~~~~~~~~i~~ir~~~p---------------------------------------------~~~Vi 276 (496)
T 4fxs_A 242 AGVDVLLIDSSHGHSEGVLQRIRETRAAYP---------------------------------------------HLEII 276 (496)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCT---------------------------------------------TCCEE
T ss_pred ccCceEEeccccccchHHHHHHHHHHHHCC---------------------------------------------CceEE
Confidence 3689999998766543 4589999998776 67877
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEe
Q 023816 162 IMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 162 ~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
+ ..-...+....+.++||+....
T Consensus 277 ~-g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 277 G-GNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp E-EEECSHHHHHHHHHHTCSEEEE
T ss_pred E-cccCcHHHHHHHHHhCCCEEEE
Confidence 6 2235567888899999988775
No 240
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=43.84 E-value=73 Score=29.43 Aligned_cols=44 Identities=11% Similarity=0.326 Sum_probs=36.2
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
..+|.+-.. ..+...+|+++|++-.+..-++.+++++++..+..
T Consensus 207 ~~kIeVEv~--tl~e~~eAl~aGaDiImLDn~s~~~l~~av~~~~~ 250 (300)
T 3l0g_A 207 NEYIAIECD--NISQVEESLSNNVDMILLDNMSISEIKKAVDIVNG 250 (300)
T ss_dssp SCCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHTT
T ss_pred CCCEEEEEC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhhcC
Confidence 567776553 36888999999999999999999999988887754
No 241
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=43.46 E-value=68 Score=28.88 Aligned_cols=68 Identities=19% Similarity=0.108 Sum_probs=41.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhC--C---CEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCC----
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTIS--S---CKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT---- 98 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~--g---~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~---- 98 (276)
..+|..||=++...+..++.+... | -++. ...++.+.+... ...||+|++|..-|...
T Consensus 132 ~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~------------~~~fD~Ii~d~~~~~~~~~~l 199 (314)
T 2b2c_A 132 VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH------------KNEFDVIITDSSDPVGPAESL 199 (314)
T ss_dssp CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC------------TTCEEEEEECCC---------
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhc------------CCCceEEEEcCCCCCCcchhh
Confidence 468999999999999998888643 2 2343 356666655432 34799999998544211
Q ss_pred -HHHHHHHHHh
Q 023816 99 -GYELLKKIKV 108 (276)
Q Consensus 99 -G~ell~~Ir~ 108 (276)
..++++.+++
T Consensus 200 ~t~~~l~~~~~ 210 (314)
T 2b2c_A 200 FGQSYYELLRD 210 (314)
T ss_dssp ----HHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 1355666554
No 242
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=43.40 E-value=50 Score=31.12 Aligned_cols=51 Identities=14% Similarity=0.037 Sum_probs=39.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCE---EEE-ECCHHHHHH-HhcccccccccCCCCCceeEEEEec
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCK---VTA-VDSGRRALQ-FLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~---v~~-a~~g~~al~-~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
-+|..||-++...+.+++-++..|++ +.. ..+..+.++ .+ ...||+|++|.
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~------------~~~fD~V~lDP 133 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW------------GFGFDYVDLDP 133 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC------------SSCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh------------CCCCcEEEECC
Confidence 47999999999999999999988863 444 556666554 33 24699999997
No 243
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=43.11 E-value=1.3e+02 Score=25.86 Aligned_cols=66 Identities=14% Similarity=0.078 Sum_probs=39.7
Q ss_pred EEEEEeCC-HHHHHHHHHHHhhCCCEEEEE-------CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHH
Q 023816 31 HVLAVDDS-FVDRKVIERLLTISSCKVTAV-------DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYEL 102 (276)
Q Consensus 31 ~VLIVdD~-~~~~~~L~~~L~~~g~~v~~a-------~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~el 102 (276)
.+++.+++ ..-+...+.+.+..|.+++.. .+....+..+ ...++|+|++-. ...++..+
T Consensus 146 ~~~~~~~~~~yg~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i-----------~~~~~d~v~~~~--~~~~~~~~ 212 (353)
T 4gnr_A 146 VVLYTDNASDYAKGIAKSFRESYKGEIVADETFVAGDTDFQAALTKM-----------KGKDFDAIVVPG--YYNEAGKI 212 (353)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHCCSEEEEEEEECTTCCCCHHHHHHH-----------HTSCCSEEECCS--CHHHHHHH
T ss_pred EEEEEcCchHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHH-----------HhcCCCEEEEec--CcHHHHHH
Confidence 34555554 344555555656677776542 3556677777 567899988532 23355667
Q ss_pred HHHHHhh
Q 023816 103 LKKIKVT 109 (276)
Q Consensus 103 l~~Ir~~ 109 (276)
++.+++.
T Consensus 213 ~~~~~~~ 219 (353)
T 4gnr_A 213 VNQARGM 219 (353)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 7777764
No 244
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=43.04 E-value=1.7e+02 Score=25.61 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=30.6
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCC-CCHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKP-VKLSDVKRIKDYL 200 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP-v~~~~L~~~~~~l 200 (276)
+.++++=+...+...+..+++.|++..+..= -+.++++++++.+
T Consensus 68 ~~~~~VRv~~~~~~~i~~~l~~g~~~I~~P~V~s~ee~~~~~~~~ 112 (267)
T 2vws_A 68 ASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_dssp SSEEEEECSSCCHHHHHHHHHTTCCEEEECCCCSHHHHHHHHHHT
T ss_pred CCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCCHHHHHHHHHHH
Confidence 3566666666778889999999998765533 3567776666554
No 245
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=42.99 E-value=72 Score=26.88 Aligned_cols=29 Identities=10% Similarity=0.296 Sum_probs=25.2
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++|||+-.+-...+++.++++.||+.++.
T Consensus 195 ~ipvia~GGI~~~~d~~~~~~~Gadgv~v 223 (253)
T 1thf_D 195 TLPIIASGGAGKMEHFLEAFLAGADAALA 223 (253)
T ss_dssp CSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEECCCCCHHHHHHHHHcCChHHHH
Confidence 58999888878889999999999998875
No 246
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=42.86 E-value=67 Score=26.80 Aligned_cols=70 Identities=13% Similarity=0.080 Sum_probs=45.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~--~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
..+|..||-++...+..++.++..|+ ++. ...+..+.+..+.... ....||+|++|.. ..+-.+++++
T Consensus 97 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~-------~~~~fD~V~~d~~--~~~~~~~l~~ 167 (232)
T 3cbg_A 97 DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGK-------PLPEFDLIFIDAD--KRNYPRYYEI 167 (232)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSS-------SCCCEEEEEECSC--GGGHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcC-------CCCCcCEEEECCC--HHHHHHHHHH
Confidence 45899999999999999998887775 244 3667766665542100 0157999999964 2223344555
Q ss_pred HH
Q 023816 106 IK 107 (276)
Q Consensus 106 Ir 107 (276)
+.
T Consensus 168 ~~ 169 (232)
T 3cbg_A 168 GL 169 (232)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 247
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=42.65 E-value=1e+02 Score=28.97 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=44.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCC---C------EEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCC-CC--
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISS---C------KVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM-PG-- 96 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g---~------~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~m-p~-- 96 (276)
-+|.+||=++...+..++.+...+ + ++. ...++.+.++.+.. ....||+||+|.-- |.
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~---------~~~~fDvII~D~~d~P~~~ 282 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK---------EGREFDYVINDLTAVPIST 282 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH---------HTCCEEEEEEECCSSCCCC
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhc---------cCCCceEEEECCCCcccCc
Confidence 578999999999999999876321 1 233 36788877765411 23579999999754 42
Q ss_pred ----CCHHHHHHHH
Q 023816 97 ----MTGYELLKKI 106 (276)
Q Consensus 97 ----~~G~ell~~I 106 (276)
.-..++.+.+
T Consensus 283 ~p~~L~t~eFy~~~ 296 (364)
T 2qfm_A 283 SPEEDSTWEFLRLI 296 (364)
T ss_dssp C----CHHHHHHHH
T ss_pred CchhhhHHHHHHHH
Confidence 2345666665
No 248
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=42.52 E-value=78 Score=26.66 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=26.6
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
.+|+++...-.+.+.+.++++.||+..+.=
T Consensus 75 ~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg 104 (252)
T 1ka9_F 75 FIPLTVGGGVRSLEDARKLLLSGADKVSVN 104 (252)
T ss_dssp CSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred CCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 689999998889999999999999887763
No 249
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=42.43 E-value=79 Score=29.37 Aligned_cols=43 Identities=16% Similarity=0.297 Sum_probs=34.1
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 201 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~ 201 (276)
..+|.+... ..+...+|+++|++-....-++.+++++++..+.
T Consensus 231 ~~kIeVEVd--tldea~eAl~aGaD~I~LDn~~~~~l~~av~~l~ 273 (320)
T 3paj_A 231 GKPVEVETE--TLAELEEAISAGADIIMLDNFSLEMMREAVKINA 273 (320)
T ss_dssp TSCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHT
T ss_pred CCeEEEEEC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhC
Confidence 456666553 3467889999999999999999999988887764
No 250
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=42.40 E-value=1.9e+02 Score=25.87 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=31.6
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC-CHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKPV-KLSDVKRIKDYL 200 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv-~~~~L~~~~~~l 200 (276)
+.++++=+...+..++..+++.|++..+..=+ +.++++++++.+
T Consensus 89 ~~~~~VRv~~~d~~di~~~ld~ga~~ImlP~V~saeea~~~~~~~ 133 (287)
T 2v5j_A 89 PSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAREAVRAT 133 (287)
T ss_dssp SSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHh
Confidence 45677777777888999999999987655433 566776665543
No 251
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=42.34 E-value=70 Score=28.50 Aligned_cols=38 Identities=21% Similarity=0.530 Sum_probs=27.0
Q ss_pred cCCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 023816 165 SENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 202 (276)
Q Consensus 165 ~~~~~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~~ 202 (276)
.....+....|+++|..=|+.||+ +.++..++.+...+
T Consensus 76 ~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~ 115 (354)
T 3db2_A 76 NDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKE 115 (354)
T ss_dssp TTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHH
Confidence 333456778899999999999996 45666666655543
No 252
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=42.26 E-value=1.2e+02 Score=23.46 Aligned_cols=69 Identities=22% Similarity=0.245 Sum_probs=44.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSC--KVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~--~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
.+|..||-++...+..++.++..+. ++. ...+..+.+..+.. ....||+|++|...-..+..+.++.+
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---------~~~~fD~i~~~~~~~~~~~~~~~~~l 138 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE---------EKLQFDLVLLDPPYAKQEIVSQLEKM 138 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH---------TTCCEEEEEECCCGGGCCHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh---------cCCCCCEEEECCCCCchhHHHHHHHH
Confidence 5899999999999999888877664 233 35566555443310 24579999998532234455566666
Q ss_pred H
Q 023816 107 K 107 (276)
Q Consensus 107 r 107 (276)
.
T Consensus 139 ~ 139 (187)
T 2fhp_A 139 L 139 (187)
T ss_dssp H
T ss_pred H
Confidence 3
No 253
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=42.12 E-value=1.6e+02 Score=28.18 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=23.9
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
.+|||+--+-....++.+|+..||+...
T Consensus 358 ~ipVia~GGI~~~~di~kala~GAd~V~ 385 (514)
T 1jcn_A 358 GVPIIADGGIQTVGHVVKALALGASTVM 385 (514)
T ss_dssp TCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCeee
Confidence 5898887777788999999999998764
No 254
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=41.92 E-value=92 Score=28.40 Aligned_cols=45 Identities=16% Similarity=0.290 Sum_probs=30.8
Q ss_pred CeEEEEe--cCCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 023816 158 IPVVIMS--SENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 202 (276)
Q Consensus 158 ipiV~ls--~~~~~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~~ 202 (276)
+-+|++. .....+....|+++|..=|+.||+ +.++..++++...+
T Consensus 86 vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 134 (398)
T 3dty_A 86 IQAVSIATPNGTHYSITKAALEAGLHVVCEKPLCFTVEQAENLRELSHK 134 (398)
T ss_dssp CSEEEEESCGGGHHHHHHHHHHTTCEEEECSCSCSCHHHHHHHHHHHHH
T ss_pred CCEEEECCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 4444443 333466788999999999999998 45666666665544
No 255
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=41.85 E-value=41 Score=29.06 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=25.4
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
++||++-.+=+..+.+.++++.||+.+++=
T Consensus 201 ~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 201 NKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp SSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 588888777777899999999999999864
No 256
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=41.37 E-value=70 Score=28.90 Aligned_cols=51 Identities=18% Similarity=0.138 Sum_probs=26.8
Q ss_pred eeeeccccCCCCCCCCCCCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHh
Q 023816 9 SLRLISDEIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFL 69 (276)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l 69 (276)
++|-.++.|+|. .+||||+.-- ..-+.+.+.|.+ .++|..++-..+.++.+
T Consensus 4 ~~~~~~~~~~g~--------~mkilvlGaG-~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~ 54 (365)
T 3abi_A 4 KVHHHHHHIEGR--------HMKVLILGAG-NIGRAIAWDLKD-EFDVYIGDVNNENLEKV 54 (365)
T ss_dssp --------------------CCEEEEECCS-HHHHHHHHHHTT-TSEEEEEESCHHHHHHH
T ss_pred ccccccccccCC--------ccEEEEECCC-HHHHHHHHHHhc-CCCeEEEEcCHHHHHHH
Confidence 567788888886 5689999884 455666667754 57888776555556665
No 257
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=41.23 E-value=63 Score=25.65 Aligned_cols=56 Identities=14% Similarity=0.067 Sum_probs=42.2
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 25 SDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 25 ~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
.+-.+.+|.++.... ....+.+.+...+.++..+.+..++++.+ ..++.|.++.|.
T Consensus 107 ~dL~g~~v~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l-----------~~G~vDa~~~~~ 162 (239)
T 1lst_A 107 ESLKGKHVGVLQGST-QEAYANDNWRTKGVDVVAYANQDLIYSDL-----------TAGRLDAALQDE 162 (239)
T ss_dssp HHHTTCEEEEETTSH-HHHHHHHHTGGGTCEEEEESSHHHHHHHH-----------HTTSCSEEEEEH
T ss_pred HHhCCCEEEEEcCcc-HHHHHHHhcccCCCeEEEcCCHHHHHHHH-----------HcCCCCEEEeCc
Confidence 344456777765544 45566666666688999999999999999 678899999984
No 258
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=40.89 E-value=83 Score=26.53 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=29.3
Q ss_pred CCeEEEEecCCCHHHHHHHHhc-----C-CCeEEe------CCCCHHHH
Q 023816 157 EIPVVIMSSENILARIDRCLED-----G-AEDFIV------KPVKLSDV 193 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~-----G-a~d~l~------KPv~~~~L 193 (276)
.+|||+-.+-...+++.++++. | |+..+. .++++.++
T Consensus 188 ~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~~~~~~~~ 236 (241)
T 1qo2_A 188 EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGILTVEVM 236 (241)
T ss_dssp TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSSCHHHH
T ss_pred CCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcCCCCHHHH
Confidence 5899988888888999999988 9 988765 35555554
No 259
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=40.64 E-value=1.4e+02 Score=24.95 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=24.5
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+||++..+=...+.+.+++++||+.++.
T Consensus 186 ~ipvia~GGI~s~~~~~~~~~~Gad~v~v 214 (234)
T 1yxy_A 186 GIAVIAEGKIHSPEEAKKINDLGVAGIVV 214 (234)
T ss_dssp TCCEEEESCCCSHHHHHHHHTTCCSEEEE
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 58888777777799999999999998865
No 260
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=40.27 E-value=1.2e+02 Score=26.57 Aligned_cols=68 Identities=12% Similarity=0.039 Sum_probs=40.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhh----C-CCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC-----
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTI----S-SCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM----- 97 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~----~-g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~----- 97 (276)
..+|..||=++...+..++.+.. . .-++. ...++.+.+.. ....||+|++|..-|..
T Consensus 114 ~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~------------~~~~fD~Ii~d~~~~~~~~~~~ 181 (296)
T 1inl_A 114 VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK------------FKNEFDVIIIDSTDPTAGQGGH 181 (296)
T ss_dssp CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG------------CSSCEEEEEEEC----------
T ss_pred CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh------------CCCCceEEEEcCCCcccCchhh
Confidence 46899999999998888887743 1 11233 25565544322 23469999999754411
Q ss_pred -CHHHHHHHHHh
Q 023816 98 -TGYELLKKIKV 108 (276)
Q Consensus 98 -~G~ell~~Ir~ 108 (276)
...++++.+++
T Consensus 182 l~~~~~l~~~~~ 193 (296)
T 1inl_A 182 LFTEEFYQACYD 193 (296)
T ss_dssp CCSHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 22466666654
No 261
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=40.25 E-value=70 Score=28.98 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=31.1
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 023816 161 VIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 201 (276)
Q Consensus 161 V~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~ 201 (276)
|.++.. +.+...+|+++|++-....++..+.++++++.+.
T Consensus 199 IgVev~-t~eea~eA~~aGaD~I~ld~~~~~~~k~av~~v~ 238 (286)
T 1x1o_A 199 VEVEVR-SLEELEEALEAGADLILLDNFPLEALREAVRRVG 238 (286)
T ss_dssp EEEEES-SHHHHHHHHHHTCSEEEEESCCHHHHHHHHHHHT
T ss_pred EEEEeC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhC
Confidence 344554 4778889999999888899999999987776653
No 262
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=40.18 E-value=99 Score=28.41 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=22.3
Q ss_pred CCeEEEEe-cCCCHHHHHHHHhc--CCCeEEeCC
Q 023816 157 EIPVVIMS-SENILARIDRCLED--GAEDFIVKP 187 (276)
Q Consensus 157 ~ipiV~ls-~~~~~~~~~~al~~--Ga~d~l~KP 187 (276)
++.|+.-. .=...+++..+++. |+++|+.-.
T Consensus 227 dvivLc~gGpIstpeDv~~~l~~t~G~~G~~gAS 260 (286)
T 2p10_A 227 DIIILSHGGPIANPEDARFILDSCQGCHGFYGAS 260 (286)
T ss_dssp CCEEEEESTTCCSHHHHHHHHHHCTTCCEEEESH
T ss_pred CcEEEecCCCCCCHHHHHHHHhcCCCccEEEeeh
Confidence 55444333 22578899999999 999999853
No 263
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=40.17 E-value=61 Score=27.64 Aligned_cols=30 Identities=10% Similarity=0.290 Sum_probs=25.5
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
.+|+++...-.+.+.+.++++.||+..+.=
T Consensus 74 ~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg 103 (266)
T 2w6r_A 74 TLPIIASGGAGKMEHFLEAFLAGADKALAA 103 (266)
T ss_dssp CSCEEEESCCCSTHHHHHHHHHTCSEEECC
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCcHhhhh
Confidence 589998877777888999999999988764
No 264
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=40.14 E-value=75 Score=30.61 Aligned_cols=57 Identities=21% Similarity=0.198 Sum_probs=42.6
Q ss_pred CceeEEEEecCCCCC-CHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEE
Q 023816 83 LKVDLIITDYCMPGM-TGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVV 161 (276)
Q Consensus 83 ~~~DlIL~D~~mp~~-~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV 161 (276)
..+|+|.+|...+.. .-.+.++++++..| ++||+
T Consensus 240 aG~d~I~id~a~g~~~~~~~~v~~i~~~~p---------------------------------------------~~~Vi 274 (490)
T 4avf_A 240 AGVDVVVVDTAHGHSKGVIERVRWVKQTFP---------------------------------------------DVQVI 274 (490)
T ss_dssp TTCSEEEEECSCCSBHHHHHHHHHHHHHCT---------------------------------------------TSEEE
T ss_pred cccceEEecccCCcchhHHHHHHHHHHHCC---------------------------------------------CceEE
Confidence 368999999876543 34589999998766 67877
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEe
Q 023816 162 IMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 162 ~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
+-. -...+....+.++||+....
T Consensus 275 ~g~-v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 275 GGN-IATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp EEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred Eee-eCcHHHHHHHHHcCCCEEEE
Confidence 632 35567888999999987775
No 265
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=39.92 E-value=96 Score=28.33 Aligned_cols=44 Identities=9% Similarity=0.085 Sum_probs=34.9
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
..+|.+-. ...+...+|+++|++-....-++.+++++++..+..
T Consensus 198 ~~~IeVEv--~tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~~~ 241 (287)
T 3tqv_A 198 NKVVEVEV--TNLDELNQAIAAKADIVMLDNFSGEDIDIAVSIARG 241 (287)
T ss_dssp TSCEEEEE--SSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHTT
T ss_pred CCcEEEEe--CCHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhhcC
Confidence 56766643 344788899999999999999999999888887653
No 266
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=39.88 E-value=84 Score=25.45 Aligned_cols=70 Identities=11% Similarity=0.031 Sum_probs=47.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~--~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
..+|..||-++...+..++.++..|+ ++. ...+..+.+..+... ....||+|++|... ..-.++++.
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~--------~~~~fD~v~~d~~~--~~~~~~l~~ 152 (223)
T 3duw_A 83 GGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENE--------KYEPFDFIFIDADK--QNNPAYFEW 152 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT--------TCCCCSEEEECSCG--GGHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc--------CCCCcCEEEEcCCc--HHHHHHHHH
Confidence 46899999999999999999988776 344 366777766554210 11469999999642 223345555
Q ss_pred HHh
Q 023816 106 IKV 108 (276)
Q Consensus 106 Ir~ 108 (276)
+.+
T Consensus 153 ~~~ 155 (223)
T 3duw_A 153 ALK 155 (223)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 267
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=39.77 E-value=76 Score=28.82 Aligned_cols=43 Identities=21% Similarity=0.293 Sum_probs=34.1
Q ss_pred CeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 158 IPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 158 ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
.+|.+ ... +.+...+|+++|++-.+...++.+++++++..+..
T Consensus 194 ~~I~V-EV~-tleea~eA~~aGaD~I~LDn~~~e~l~~av~~l~~ 236 (285)
T 1o4u_A 194 TKIEV-EVE-NLEDALRAVEAGADIVMLDNLSPEEVKDISRRIKD 236 (285)
T ss_dssp SCEEE-EES-SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHHH
T ss_pred ceEEE-EeC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhc
Confidence 45554 433 46889999999998888999999999888887764
No 268
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=39.74 E-value=1.2e+02 Score=26.24 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=31.6
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 202 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~~ 202 (276)
++-+|........+....|+++|..=|+.||+ +.++..++.+...+
T Consensus 68 D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~ 115 (308)
T 3uuw_A 68 DCIFLHSSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIELSTK 115 (308)
T ss_dssp SEEEECCCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHH
T ss_pred CEEEEeCCcHhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHH
Confidence 34444444444566778899999999999998 55666666665544
No 269
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=39.70 E-value=71 Score=27.95 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=23.4
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
++||.+=.+-+..+.+.+++.+||+.+++=
T Consensus 205 ~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 205 AAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp CCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 578766555555888999999999999874
No 270
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=39.21 E-value=78 Score=26.12 Aligned_cols=29 Identities=17% Similarity=0.341 Sum_probs=24.3
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++||++-.+-...+.+.++++.||+.++.
T Consensus 198 ~~pvia~GGi~~~~~~~~~~~~Ga~~v~v 226 (253)
T 1h5y_A 198 RIPVIASGGAGRVEHFYEAAAAGADAVLA 226 (253)
T ss_dssp SSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCcHHHH
Confidence 58888877777778999999999999875
No 271
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=38.84 E-value=85 Score=24.81 Aligned_cols=67 Identities=16% Similarity=0.065 Sum_probs=42.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC--EEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCC-CCCC-------
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSC--KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM-PGMT------- 98 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~--~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~m-p~~~------- 98 (276)
.+|..||-++...+..++.++..|. ++.. ..+..+.... ....||+|++|... |..+
T Consensus 48 ~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------------~~~~fD~v~~~~~~~~~~~~~~~~~~ 115 (197)
T 3eey_A 48 GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKY------------IDCPVKAVMFNLGYLPSGDHSISTRP 115 (197)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGT------------CCSCEEEEEEEESBCTTSCTTCBCCH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhh------------ccCCceEEEEcCCcccCcccccccCc
Confidence 4889999999999999888887765 3433 3332221111 33579999999744 4332
Q ss_pred --HHHHHHHHHh
Q 023816 99 --GYELLKKIKV 108 (276)
Q Consensus 99 --G~ell~~Ir~ 108 (276)
..++++++.+
T Consensus 116 ~~~~~~l~~~~~ 127 (197)
T 3eey_A 116 ETTIQALSKAME 127 (197)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 2356666654
No 272
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=38.75 E-value=94 Score=27.50 Aligned_cols=38 Identities=11% Similarity=-0.012 Sum_probs=22.7
Q ss_pred CCCCCccEEEEEeCCH----HHHHHHHHHHhhCCCEEEEECC
Q 023816 24 PSDTEEVHVLAVDDSF----VDRKVIERLLTISSCKVTAVDS 61 (276)
Q Consensus 24 ~~~~~~~~VLIVdD~~----~~~~~L~~~L~~~g~~v~~a~~ 61 (276)
.++...+|||++-... .-...|.+.|...|++|..+..
T Consensus 15 ~~~~~~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~ 56 (398)
T 3oti_A 15 HIEGRHMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA 56 (398)
T ss_dssp ----CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES
T ss_pred chhhhcCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc
Confidence 3445568999986431 1123466677888999987654
No 273
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=38.74 E-value=1.2e+02 Score=24.82 Aligned_cols=68 Identities=6% Similarity=-0.004 Sum_probs=44.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCC--EEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~--~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
..+|..||-++...+..++.++..|. ++.. ..+..+.+..+. ....||+|++|...+ +-.++++.
T Consensus 78 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~----------~~~~fD~I~~~~~~~--~~~~~l~~ 145 (233)
T 2gpy_A 78 EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLE----------LYPLFDVLFIDAAKG--QYRRFFDM 145 (233)
T ss_dssp TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHT----------TSCCEEEEEEEGGGS--CHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcc----------cCCCccEEEECCCHH--HHHHHHHH
Confidence 46899999999999999998887775 2443 344444333320 134799999997643 33455555
Q ss_pred HHh
Q 023816 106 IKV 108 (276)
Q Consensus 106 Ir~ 108 (276)
+.+
T Consensus 146 ~~~ 148 (233)
T 2gpy_A 146 YSP 148 (233)
T ss_dssp HGG
T ss_pred HHH
Confidence 543
No 274
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=38.53 E-value=1.5e+02 Score=25.68 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=31.7
Q ss_pred ccccCCCCCeEEEEec-CCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 150 QDSSALREIPVVIMSS-ENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 150 ~~~~~~~~ipiV~ls~-~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
.-+.....+|+|+... .... +.++.| .+++..| +.++|.+.+..+..
T Consensus 294 ~lEA~a~G~PvI~~~~~~~~~----e~v~~g-~g~lv~~-d~~~la~~i~~ll~ 341 (384)
T 1vgv_A 294 QEEAPSLGKPVLVMRDTTERP----EAVTAG-TVRLVGT-DKQRIVEEVTRLLK 341 (384)
T ss_dssp GGTGGGGTCCEEEESSCCSCH----HHHHHT-SEEEECS-SHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEccCCCCcc----hhhhCC-ceEEeCC-CHHHHHHHHHHHHh
Confidence 3355666899987754 3333 345668 8899988 88888777766653
No 275
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=38.30 E-value=66 Score=30.15 Aligned_cols=57 Identities=14% Similarity=0.021 Sum_probs=39.3
Q ss_pred CceeEEEEecCCCCCC-HHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEE
Q 023816 83 LKVDLIITDYCMPGMT-GYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVV 161 (276)
Q Consensus 83 ~~~DlIL~D~~mp~~~-G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV 161 (276)
..+|+|.+|....... -.+.+++||+..| .+||+
T Consensus 111 aGvdvI~id~a~G~~~~~~e~I~~ir~~~~---------------------------------------------~~~Vi 145 (361)
T 3r2g_A 111 AGADFFCVDVAHAHAKYVGKTLKSLRQLLG---------------------------------------------SRCIM 145 (361)
T ss_dssp TTCCEEEEECSCCSSHHHHHHHHHHHHHHT---------------------------------------------TCEEE
T ss_pred cCCCEEEEeCCCCCcHhHHHHHHHHHHhcC---------------------------------------------CCeEE
Confidence 3588999987543222 2578888887655 67777
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEe
Q 023816 162 IMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 162 ~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
+=. -...+....+.++||+...+
T Consensus 146 ~G~-V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 146 AGN-VATYAGADYLASCGADIIKA 168 (361)
T ss_dssp EEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred EcC-cCCHHHHHHHHHcCCCEEEE
Confidence 611 24567888999999987775
No 276
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=37.90 E-value=12 Score=31.12 Aligned_cols=31 Identities=10% Similarity=-0.007 Sum_probs=24.2
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCH
Q 023816 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSG 62 (276)
Q Consensus 32 VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g 62 (276)
|+|||.....-..+.+.|+..|+++..+...
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~ 34 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRND 34 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETT
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCC
Confidence 8999965555567888999999988876653
No 277
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=37.47 E-value=2.8e+02 Score=26.51 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=24.9
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+|||+--+=...+++.+|+++||+....
T Consensus 332 ~iPVIa~GGI~~~~di~kal~~GAd~V~v 360 (490)
T 4avf_A 332 GVPLIADGGIRFSGDLAKAMVAGAYCVMM 360 (490)
T ss_dssp TCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCCeeee
Confidence 58998887878899999999999987654
No 278
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=37.45 E-value=53 Score=29.14 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=30.2
Q ss_pred CeEEEEecCCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 023816 158 IPVVIMSSENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 202 (276)
Q Consensus 158 ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~~ 202 (276)
+-+|........+....|+++|..=|+.||+ +.++.+++.+...+
T Consensus 70 ~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~ 116 (330)
T 3e9m_A 70 IIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQE 116 (330)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3333334444466778899999999999996 45666666665544
No 279
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=37.41 E-value=95 Score=24.03 Aligned_cols=51 Identities=18% Similarity=0.250 Sum_probs=37.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCE--EEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCK--VTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~--v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
.+|..||-++...+..++.++..|.. +.. ..+..+.+... ...||+|++|.
T Consensus 55 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~------------~~~fD~i~~~~ 108 (177)
T 2esr_A 55 SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL------------TGRFDLVFLDP 108 (177)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB------------CSCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh------------cCCCCEEEECC
Confidence 58999999999999999988877752 443 55655544433 23599999984
No 280
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=37.26 E-value=94 Score=25.42 Aligned_cols=31 Identities=13% Similarity=0.038 Sum_probs=18.5
Q ss_pred HHHHHHhcCCCeEEeCCCCH-HHHHHHHHHHH
Q 023816 171 RIDRCLEDGAEDFIVKPVKL-SDVKRIKDYLT 201 (276)
Q Consensus 171 ~~~~al~~Ga~d~l~KPv~~-~~L~~~~~~l~ 201 (276)
.+..+.++|++.++.--... +.+.+.++.+.
T Consensus 69 ~~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~~ 100 (211)
T 3f4w_A 69 ESQLLFDAGADYVTVLGVTDVLTIQSCIRAAK 100 (211)
T ss_dssp HHHHHHHTTCSEEEEETTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEeCCCChhHHHHHHHHHH
Confidence 37788888888777754432 33444444443
No 281
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=37.23 E-value=1.4e+02 Score=22.76 Aligned_cols=65 Identities=12% Similarity=0.021 Sum_probs=46.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCC-EEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSC-KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~-~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
+..+|..+|-++...+..++.++..|. ++.. ..+..+ .+ ....||+|+++.. .+-.++++.
T Consensus 56 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~---~~-----------~~~~~D~i~~~~~---~~~~~~l~~ 118 (183)
T 2yxd_A 56 RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED---VL-----------DKLEFNKAFIGGT---KNIEKIIEI 118 (183)
T ss_dssp TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH---HG-----------GGCCCSEEEECSC---SCHHHHHHH
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc---cc-----------cCCCCcEEEECCc---ccHHHHHHH
Confidence 356899999999999999988887764 3333 455544 23 2347999999865 566678888
Q ss_pred HHhh
Q 023816 106 IKVT 109 (276)
Q Consensus 106 Ir~~ 109 (276)
+++.
T Consensus 119 ~~~~ 122 (183)
T 2yxd_A 119 LDKK 122 (183)
T ss_dssp HHHT
T ss_pred HhhC
Confidence 8764
No 282
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=37.09 E-value=60 Score=23.15 Aligned_cols=53 Identities=26% Similarity=0.183 Sum_probs=33.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCC-CEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecC
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISS-CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC 93 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g-~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~ 93 (276)
..+|+|+.- -..-..+.+.|...| ++|..++...+.++.+ .......+..|+.
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~-----------~~~~~~~~~~d~~ 58 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVL-----------NRMGVATKQVDAK 58 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHH-----------HTTTCEEEECCTT
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHH-----------HhCCCcEEEecCC
Confidence 568999988 445555555666678 8888876555555555 2234556666653
No 283
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=37.09 E-value=1e+02 Score=27.99 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=22.2
Q ss_pred CCeEEEE--ecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIM--SSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~l--s~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++|||++ .+-...+++.++++.||+.++.
T Consensus 207 ~iPVivvA~GGI~t~~dv~~~~~~GAdgVlV 237 (297)
T 4adt_A 207 RLPVVNFAAGGIATPADAAMCMQLGMDGVFV 237 (297)
T ss_dssp SCSSEEEEESCCCSHHHHHHHHHTTCSCEEE
T ss_pred CCCeEEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 4677643 3334788999999999999986
No 284
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=36.78 E-value=53 Score=31.36 Aligned_cols=45 Identities=9% Similarity=0.189 Sum_probs=29.6
Q ss_pred CeEEEEecC--CCHHHHHHHHhcC------CCeEEeCCC--CHHHHHHHHHHHHH
Q 023816 158 IPVVIMSSE--NILARIDRCLEDG------AEDFIVKPV--KLSDVKRIKDYLTR 202 (276)
Q Consensus 158 ipiV~ls~~--~~~~~~~~al~~G------a~d~l~KPv--~~~~L~~~~~~l~~ 202 (276)
+-+|+++.. ...+....|+++| ..=|+.||+ +.++..++++...+
T Consensus 109 vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~ 163 (479)
T 2nvw_A 109 IDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQ 163 (479)
T ss_dssp CSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 444444433 3455677899999 778899997 46666666665544
No 285
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=36.78 E-value=1.3e+02 Score=25.82 Aligned_cols=29 Identities=28% Similarity=0.404 Sum_probs=21.0
Q ss_pred CCeEEEEecCCC--HHH----HHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENI--LAR----IDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~--~~~----~~~al~~Ga~d~l~ 185 (276)
++||++..+-.. .++ +.++++.|++.+..
T Consensus 202 ~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~v 236 (273)
T 2qjg_A 202 PAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAV 236 (273)
T ss_dssp SSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEEC
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 489998776663 444 66777899988764
No 286
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=36.70 E-value=1.8e+02 Score=25.36 Aligned_cols=62 Identities=23% Similarity=0.341 Sum_probs=42.0
Q ss_pred ceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEE
Q 023816 84 KVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIM 163 (276)
Q Consensus 84 ~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~l 163 (276)
.+++|=+.+. .-++++.++.|++..| + .+|-.
T Consensus 38 Gi~~iEvt~~--t~~a~~~I~~l~~~~p---------------------------------------------~-~~IGA 69 (217)
T 3lab_A 38 GVHLLEVTLR--TEAGLAAISAIKKAVP---------------------------------------------E-AIVGA 69 (217)
T ss_dssp TCCEEEEETT--STTHHHHHHHHHHHCT---------------------------------------------T-SEEEE
T ss_pred CCCEEEEeCC--CccHHHHHHHHHHHCC---------------------------------------------C-CeEee
Confidence 4555555544 3478999999998766 4 34433
Q ss_pred ecCCCHHHHHHHHhcCCCeEEeCCCCHHHHH
Q 023816 164 SSENILARIDRCLEDGAEDFIVKPVKLSDVK 194 (276)
Q Consensus 164 s~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~ 194 (276)
-.--+.+..+.+.++|| +|+.-|....++.
T Consensus 70 GTVlt~~~a~~ai~AGA-~fivsP~~~~evi 99 (217)
T 3lab_A 70 GTVCTADDFQKAIDAGA-QFIVSPGLTPELI 99 (217)
T ss_dssp ECCCSHHHHHHHHHHTC-SEEEESSCCHHHH
T ss_pred ccccCHHHHHHHHHcCC-CEEEeCCCcHHHH
Confidence 33346888999999999 5777777666663
No 287
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=36.57 E-value=99 Score=27.32 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=28.3
Q ss_pred eEEEEecCCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHH
Q 023816 159 PVVIMSSENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLT 201 (276)
Q Consensus 159 piV~ls~~~~~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~ 201 (276)
-+|........+....|+++|..=|+.||+ +.++..++.+...
T Consensus 69 V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~ 113 (344)
T 3euw_A 69 IVIGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIG 113 (344)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHG
T ss_pred EEEeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 333333344456778899999999999996 4456656555444
No 288
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=36.56 E-value=1.3e+02 Score=24.96 Aligned_cols=52 Identities=15% Similarity=0.071 Sum_probs=30.0
Q ss_pred HHHHHHHHhhCCCEEEEECCH---H---HHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 42 RKVIERLLTISSCKVTAVDSG---R---RALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 42 ~~~L~~~L~~~g~~v~~a~~g---~---~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
.+.+++.+++.||++..+... . +.++.+ ...++|-||+--..+ .+.++++++
T Consensus 26 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l-----------~~~~vdgiIi~~~~~----~~~~~~l~~ 83 (276)
T 3jy6_A 26 FKGISSILESRGYIGVLFDANADIEREKTLLRAI-----------GSRGFDGLILQSFSN----PQTVQEILH 83 (276)
T ss_dssp HHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHH-----------HTTTCSEEEEESSCC----HHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHH-----------HhCCCCEEEEecCCc----HHHHHHHHH
Confidence 344566677889988775432 1 234444 455677777653322 566666664
No 289
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=36.44 E-value=2.4e+02 Score=25.34 Aligned_cols=30 Identities=7% Similarity=-0.016 Sum_probs=26.3
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
.+|||+-.+-...+++.+++..||+....=
T Consensus 251 ~ipvia~GGI~~~~d~~k~l~~GAd~V~iG 280 (349)
T 1p0k_A 251 ASTMIASGGLQDALDVAKAIALGASCTGMA 280 (349)
T ss_dssp TSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCeEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 689998888889999999999999988653
No 290
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=36.38 E-value=1.1e+02 Score=27.90 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=33.0
Q ss_pred ccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 152 ~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
+.....+|||+-.. ....+.+..|..+++..|-+.+++.+.+..+..
T Consensus 377 EAma~G~PvI~s~~----~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 377 EAMASGLPAVVTRN----GGPAEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp HHHHTTCCEEEESS----BHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred HHHHcCCCEEEecC----CCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 33444788886532 234566778888999999999999777666543
No 291
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=36.37 E-value=1.6e+02 Score=25.84 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=27.4
Q ss_pred ecCCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 023816 164 SSENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 202 (276)
Q Consensus 164 s~~~~~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~~ 202 (276)
......+....|+++|..=|+.||+ +.++..++.+...+
T Consensus 72 p~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~ 112 (331)
T 4hkt_A 72 PTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSD 112 (331)
T ss_dssp CGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHH
Confidence 3344456778899999999999995 55666666655443
No 292
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=36.30 E-value=71 Score=25.02 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=39.1
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 25 SDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 25 ~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
.+..+.+|.++...... .+|+..+.++..+.+..++++.+ ..++.|.++.|.
T Consensus 112 ~dL~g~~v~~~~g~~~~-----~~l~~~~~~~~~~~~~~~~~~~l-----------~~g~vDa~~~~~ 163 (233)
T 1ii5_A 112 GDLKNKEVAVVRDTTAV-----DWANFYQADVRETNNLTAAITLL-----------QKKQVEAVMFDR 163 (233)
T ss_dssp GGGTTCEEEEETTSHHH-----HHHHHTTCEEEEESSHHHHHHHH-----------HTTSCSEEEEEH
T ss_pred HHhCCCeEEEECCccHH-----HHHHHcCCCeEEcCCHHHHHHHH-----------HcCCccEEEeCH
Confidence 44456788877666542 23444488999999999999999 678899999985
No 293
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=36.19 E-value=86 Score=28.62 Aligned_cols=54 Identities=22% Similarity=0.214 Sum_probs=40.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC---EEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSC---KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~---~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
-+|..||-++...+..++-++..|+ .+.. ..+..+.+..+.. ....||+|++|.
T Consensus 244 ~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~---------~~~~fD~Ii~dp 301 (396)
T 3c0k_A 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD---------RGEKFDVIVMDP 301 (396)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHH---------TTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHh---------cCCCCCEEEECC
Confidence 4799999999999999999888777 4543 6677766654411 245799999994
No 294
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=36.06 E-value=52 Score=25.34 Aligned_cols=66 Identities=9% Similarity=-0.049 Sum_probs=42.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCE--EEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCK--VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~--v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
+..+|..+|-++...+..++.++..|.. +....+..+ .+.. ....||+|+++..+.. .++++.
T Consensus 48 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~---~~~~---------~~~~~D~i~~~~~~~~---~~~l~~ 112 (178)
T 3hm2_A 48 PQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPR---AFDD---------VPDNPDVIFIGGGLTA---PGVFAA 112 (178)
T ss_dssp SSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTG---GGGG---------CCSCCSEEEECC-TTC---TTHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHh---hhhc---------cCCCCCEEEECCcccH---HHHHHH
Confidence 3578999999999888888888877653 433344322 2210 1157999999876655 445566
Q ss_pred HHh
Q 023816 106 IKV 108 (276)
Q Consensus 106 Ir~ 108 (276)
+.+
T Consensus 113 ~~~ 115 (178)
T 3hm2_A 113 AWK 115 (178)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 295
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=36.01 E-value=1.9e+02 Score=26.01 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=20.9
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+|++ .++.-..+.+.+..+.|++.+-+
T Consensus 240 ~ipi~-AsGGIt~eni~~~a~tGvD~IsV 267 (286)
T 1x1o_A 240 RVPLE-ASGNMTLERAKAAAEAGVDYVSV 267 (286)
T ss_dssp SSCEE-EESSCCHHHHHHHHHHTCSEEEC
T ss_pred CCeEE-EEcCCCHHHHHHHHHcCCCEEEE
Confidence 45655 47777889999999999976543
No 296
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=35.91 E-value=80 Score=26.91 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=10.8
Q ss_pred ceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 84 KVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 84 ~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
++|.|++.. .+.....+++.+++
T Consensus 190 ~~dav~~~~--~~~~a~~~~~~~~~ 212 (362)
T 3snr_A 190 NPDAILVGA--SGTAAALPQTTLRE 212 (362)
T ss_dssp CCSEEEEEC--CHHHHHHHHHHHHH
T ss_pred CCCEEEEec--CcchHHHHHHHHHH
Confidence 466666532 12234445555554
No 297
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=35.50 E-value=1.1e+02 Score=26.18 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=38.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC-EEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSC-KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~-~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
.+|..+|=++...+.+++.+++.|+ .+.. ..+..+....+.. ....||+|++|.
T Consensus 109 ~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~---------~~~~fD~Vl~d~ 164 (274)
T 3ajd_A 109 GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLK---------NEIFFDKILLDA 164 (274)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH---------TTCCEEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhh---------ccccCCEEEEcC
Confidence 6899999999999999999988886 3433 5566554332210 134799999995
No 298
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=35.34 E-value=86 Score=26.62 Aligned_cols=29 Identities=10% Similarity=0.314 Sum_probs=24.4
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+|+++--+-.+.+++.++++.||+..+.
T Consensus 79 ~ipvi~~Ggi~~~~~~~~~l~~Gad~V~i 107 (247)
T 3tdn_A 79 TLPIIASGGAGKMEHFLEAFLRGADKVSI 107 (247)
T ss_dssp CSCEEEESCCCSHHHHHHHHHTTCSEECC
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCeeeh
Confidence 58998887778889999999999877654
No 299
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=35.21 E-value=41 Score=29.81 Aligned_cols=45 Identities=13% Similarity=0.208 Sum_probs=30.4
Q ss_pred CeEEEE--ecCCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 023816 158 IPVVIM--SSENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 202 (276)
Q Consensus 158 ipiV~l--s~~~~~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~~ 202 (276)
+-+|++ ......+....|+++|..=|+.||+ +.++.+++++...+
T Consensus 68 ~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~ 116 (329)
T 3evn_A 68 IDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAES 116 (329)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHH
T ss_pred CCEEEECCCcHHHHHHHHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHH
Confidence 344444 3334456678899999999999997 45666666665544
No 300
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=35.10 E-value=85 Score=26.29 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=24.8
Q ss_pred CCeEEEEecCCCHHHHHHHHhc---CCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLED---GAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~---Ga~d~l~ 185 (276)
.+||++-.+=...+++.++++. ||+.++.
T Consensus 193 ~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~v 224 (244)
T 2y88_A 193 DAPVIASGGVSSLDDLRAIATLTHRGVEGAIV 224 (244)
T ss_dssp SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred CCCEEEECCCCCHHHHHHHHhhccCCCCEEEE
Confidence 6899988877888999999998 9998765
No 301
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=34.90 E-value=2e+02 Score=26.47 Aligned_cols=90 Identities=18% Similarity=0.091 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhCCCEEEE--ECCHHHHHHHhcccccccccCCCCCceeEEEEecCC----C-CCCHHHHHHHHHhhCCCC
Q 023816 41 DRKVIERLLTISSCKVTA--VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM----P-GMTGYELLKKIKVTTPFN 113 (276)
Q Consensus 41 ~~~~L~~~L~~~g~~v~~--a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~m----p-~~~G~ell~~Ir~~~p~~ 113 (276)
..+.++++-+..+..+.. +.+.++|.... +...|.|.+.-+- . +...++++.++++.-+
T Consensus 213 ~~~~i~~l~~~~~~pv~vK~~~~~e~a~~a~------------~~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~-- 278 (370)
T 1gox_A 213 SWKDVAWLQTITSLPILVKGVITAEDARLAV------------QHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQ-- 278 (370)
T ss_dssp CHHHHHHHHHHCCSCEEEECCCSHHHHHHHH------------HTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHhCCCEEEEecCCHHHHHHHH------------HcCCCEEEECCCCCccCCCcccHHHHHHHHHHHhC--
Confidence 445666666666766554 66777775554 3357877774321 1 1234566777765321
Q ss_pred cccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 114 FLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
..+|||+-.+-....++.+++..||+....=
T Consensus 279 ------------------------------------------~~ipvia~GGI~~~~D~~k~l~~GAdaV~iG 309 (370)
T 1gox_A 279 ------------------------------------------GRIPVFLDGGVRRGTDVFKALALGAAGVFIG 309 (370)
T ss_dssp ------------------------------------------TSSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred ------------------------------------------CCCEEEEECCCCCHHHHHHHHHcCCCEEeec
Confidence 1589998888888999999999999887653
No 302
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=34.82 E-value=78 Score=30.04 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=39.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCC------CE---E-EEECCHHHHHHHhcccccccccCCCCCceeEEEEecCC
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISS------CK---V-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM 94 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g------~~---v-~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~m 94 (276)
-+|-+||=|+.+-+..+++|.... .+ + ....+|.+.++.... ...+||+||+|+--
T Consensus 229 ~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~---------~~~~yDvIIvDl~D 294 (381)
T 3c6k_A 229 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK---------EGREFDYVINDLTA 294 (381)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH---------HTCCEEEEEEECCS
T ss_pred ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhh---------ccCceeEEEECCCC
Confidence 468889999999999998874321 11 3 347888888876521 34579999999754
No 303
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=34.81 E-value=69 Score=28.43 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=32.7
Q ss_pred CCeEEEEec--CCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHHh
Q 023816 157 EIPVVIMSS--ENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTRD 203 (276)
Q Consensus 157 ~ipiV~ls~--~~~~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~~~ 203 (276)
++-+|++.. ....+....|+++|..=|+.||+ +.++..++++...+.
T Consensus 72 ~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 122 (312)
T 3o9z_A 72 GVDYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEART 122 (312)
T ss_dssp CCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHH
T ss_pred CCcEEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHc
Confidence 455555543 33456788999999999999997 556777776665543
No 304
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=34.76 E-value=91 Score=28.65 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=33.5
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 201 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~ 201 (276)
..+|.+-. ...+...+|+++|++-.+..-++.++++++++.+.
T Consensus 209 ~~~ieVEv--dtlde~~eAl~aGaD~I~LDn~~~~~l~~av~~i~ 251 (298)
T 3gnn_A 209 EVPVQIEV--ETLDQLRTALAHGARSVLLDNFTLDMMRDAVRVTE 251 (298)
T ss_dssp -CCCEEEE--SSHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHT
T ss_pred CCCEEEEe--CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhC
Confidence 45666654 33467889999999999999999999988888763
No 305
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=34.64 E-value=54 Score=25.73 Aligned_cols=52 Identities=13% Similarity=0.020 Sum_probs=34.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCC-EEEEE-CCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSC-KVTAV-DSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~-~v~~a-~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
..+|..||-++...+..++.++..|+ ++... .+.+ .+..+ ....||+|++++
T Consensus 44 ~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~-~l~~~-----------~~~~fD~v~~~~ 97 (185)
T 3mti_A 44 SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHE-NLDHY-----------VREPIRAAIFNL 97 (185)
T ss_dssp SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGG-GGGGT-----------CCSCEEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHH-HHHhh-----------ccCCcCEEEEeC
Confidence 46899999999999999888887664 23332 3321 11111 345799999985
No 306
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=34.58 E-value=49 Score=29.41 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCCCeEEeCCCC--HHHHHHHHHHHHH
Q 023816 169 LARIDRCLEDGAEDFIVKPVK--LSDVKRIKDYLTR 202 (276)
Q Consensus 169 ~~~~~~al~~Ga~d~l~KPv~--~~~L~~~~~~l~~ 202 (276)
.+....|+++|..=|+.||+. .++..++++...+
T Consensus 81 ~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 116 (337)
T 3ip3_A 81 GKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQK 116 (337)
T ss_dssp HHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 445778888888888888874 4466666555444
No 307
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=33.55 E-value=2.7e+02 Score=25.07 Aligned_cols=46 Identities=9% Similarity=0.028 Sum_probs=32.9
Q ss_pred ccCCCCCeEEEEecCCCHHHHHHHHhcC---------CCeEEeCCCCHHHHHHHHHHHH
Q 023816 152 SSALREIPVVIMSSENILARIDRCLEDG---------AEDFIVKPVKLSDVKRIKDYLT 201 (276)
Q Consensus 152 ~~~~~~ipiV~ls~~~~~~~~~~al~~G---------a~d~l~KPv~~~~L~~~~~~l~ 201 (276)
+.....+|||+-.. .-..+.+..| ..+|+..|-+.+++.+.+..+.
T Consensus 385 EAma~G~PvI~s~~----gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 439 (485)
T 2qzs_A 385 YGLKYGTLPLVRRT----GGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAF 439 (485)
T ss_dssp HHHHHTCEEEEESS----HHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHH
T ss_pred HHHHCCCCEEECCC----CCccceeccCccccccccccceEEECCCCHHHHHHHHHHHH
Confidence 34444788886422 3455667777 8999999999999977766665
No 308
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=33.45 E-value=1e+02 Score=25.36 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=20.0
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++|++ +++.-..+.+.++.++|++.++.
T Consensus 170 ~~~i~-v~GGI~~~~~~~~~~~Gad~vvv 197 (220)
T 2fli_A 170 SFDIE-VDGGVDNKTIRACYEAGANVFVA 197 (220)
T ss_dssp CCEEE-EESSCCTTTHHHHHHHTCCEEEE
T ss_pred CceEE-EECcCCHHHHHHHHHcCCCEEEE
Confidence 35554 55555577788889999988865
No 309
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=33.36 E-value=1e+02 Score=29.79 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=43.4
Q ss_pred CCceeEEEEecCCCCCCH-HHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeE
Q 023816 82 GLKVDLIITDYCMPGMTG-YELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPV 160 (276)
Q Consensus 82 ~~~~DlIL~D~~mp~~~G-~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipi 160 (276)
+..+|+|.+|..-+...+ .+++++|++..| ++||
T Consensus 266 eaGvd~I~Id~a~g~~~~v~~~i~~i~~~~~---------------------------------------------~~~v 300 (511)
T 3usb_A 266 KASVDAIVLDTAHGHSQGVIDKVKEVRAKYP---------------------------------------------SLNI 300 (511)
T ss_dssp HTTCSEEEEECSCTTSHHHHHHHHHHHHHCT---------------------------------------------TSEE
T ss_pred hhccceEEecccccchhhhhhHHHHHHHhCC---------------------------------------------CceE
Confidence 346899999987665444 469999998776 6777
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 161 VIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 161 V~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++-. -...+....+.++|++....
T Consensus 301 i~g~-v~t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 301 IAGN-VATAEATKALIEAGANVVKV 324 (511)
T ss_dssp EEEE-ECSHHHHHHHHHHTCSEEEE
T ss_pred Eeee-eccHHHHHHHHHhCCCEEEE
Confidence 7543 34667888999999987764
No 310
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=33.05 E-value=1.3e+02 Score=26.64 Aligned_cols=45 Identities=18% Similarity=0.359 Sum_probs=30.9
Q ss_pred CeEEEEec--CCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 023816 158 IPVVIMSS--ENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 202 (276)
Q Consensus 158 ipiV~ls~--~~~~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~~ 202 (276)
+-+|++.. ....+....|+++|..=|+.||+ +.++..++++...+
T Consensus 68 vD~V~i~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~~ 116 (352)
T 3kux_A 68 IDLIVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADD 116 (352)
T ss_dssp CCEEEECSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHH
T ss_pred CCEEEEeCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHHHH
Confidence 44444433 33456778899999999999994 56677666665544
No 311
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=32.96 E-value=1.2e+02 Score=29.09 Aligned_cols=58 Identities=19% Similarity=0.226 Sum_probs=41.7
Q ss_pred CCceeEEEEecCCCCCCH-HHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeE
Q 023816 82 GLKVDLIITDYCMPGMTG-YELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPV 160 (276)
Q Consensus 82 ~~~~DlIL~D~~mp~~~G-~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipi 160 (276)
+..+|+|.+|........ .++++++|+..| ++||
T Consensus 265 ~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~---------------------------------------------~~pv 299 (514)
T 1jcn_A 265 QAGVDVIVLDSSQGNSVYQIAMVHYIKQKYP---------------------------------------------HLQV 299 (514)
T ss_dssp HTTCSEEEECCSCCCSHHHHHHHHHHHHHCT---------------------------------------------TCEE
T ss_pred HcCCCEEEeeccCCcchhHHHHHHHHHHhCC---------------------------------------------CCce
Confidence 346899998876543333 588999998665 6788
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 161 VIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 161 V~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++-.- ...+.+..+.++|++.+..
T Consensus 300 i~~~v-~t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 300 IGGNV-VTAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp EEEEE-CSHHHHHHHHHHTCSEEEE
T ss_pred Eeccc-chHHHHHHHHHcCCCEEEE
Confidence 76333 4567788899999987755
No 312
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=32.93 E-value=2.1e+02 Score=26.70 Aligned_cols=94 Identities=12% Similarity=0.063 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHhhCCCEEE--EECCHHHHHHHhcccccccccCCCCCceeEEEEecCC----C-CCCHHHHHHHHHhh
Q 023816 37 DSFVDRKVIERLLTISSCKVT--AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM----P-GMTGYELLKKIKVT 109 (276)
Q Consensus 37 D~~~~~~~L~~~L~~~g~~v~--~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~m----p-~~~G~ell~~Ir~~ 109 (276)
|.....+.++.+-+..+..+. .+.+.++|.... +..+|.|++.-+- . +...++++.++++.
T Consensus 201 d~~~~w~~i~~lr~~~~~PvivK~v~~~e~A~~a~------------~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~a 268 (352)
T 3sgz_A 201 KASFCWNDLSLLQSITRLPIILKGILTKEDAELAM------------KHNVQGIVVSNHGGRQLDEVSASIDALREVVAA 268 (352)
T ss_dssp CTTCCHHHHHHHHHHCCSCEEEEEECSHHHHHHHH------------HTTCSEEEECCGGGTSSCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHH------------HcCCCEEEEeCCCCCccCCCccHHHHHHHHHHH
Confidence 334455667666666665544 367888776654 3467877764421 1 23456777777642
Q ss_pred CCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 110 TPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 110 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
-. ..+|||+-.+-....++.+++..||+....=
T Consensus 269 v~--------------------------------------------~~ipVia~GGI~~g~Dv~kaLalGA~aV~iG 301 (352)
T 3sgz_A 269 VK--------------------------------------------GKIEVYMDGGVRTGTDVLKALALGARCIFLG 301 (352)
T ss_dssp HT--------------------------------------------TSSEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred hC--------------------------------------------CCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 11 1589999888899999999999999987653
No 313
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=32.86 E-value=34 Score=30.25 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=20.7
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 189 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~ 189 (276)
++|+|+|+..++ .++.|++.+|..-+.
T Consensus 61 ~~Pivl~~y~~n------~i~~gvDg~iipdLp 87 (234)
T 2f6u_A 61 GLPIVVEPSDPS------NVVYDVDYLFVPTVL 87 (234)
T ss_dssp CCCEEECCSSCC------CCCCCSSEEEEEEET
T ss_pred CCCEEEecCCcc------hhhcCCCEEEEcccC
Confidence 799999998842 227899999987443
No 314
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=32.82 E-value=1.5e+02 Score=22.97 Aligned_cols=57 Identities=16% Similarity=0.088 Sum_probs=42.4
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 23 SPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 23 ~~~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
+..+..+.+|-++..... ...+.+.+... .++..+.+..++++.+ ..++.|.++.|.
T Consensus 103 ~~~dL~g~~v~~~~g~~~-~~~l~~~~~~~-~~~~~~~~~~~~~~~l-----------~~grvDa~~~~~ 159 (227)
T 3tql_A 103 SKQGLKGKIIGVQGGTTF-DSYLQDSFGNS-ITIQRYPSEEDALMDL-----------TSGRVDAVVGDT 159 (227)
T ss_dssp STTTTTTCEEEEETTSHH-HHHHHHHHGGG-SEEEEESSHHHHHHHH-----------TTTSSSEEESCH
T ss_pred CHHHhCCCEEEEEecccH-HHHHHHhcccc-ceEEEcCCHHHHHHHH-----------HcCCcCEEEeCh
Confidence 456667788888876654 44455554332 7888999999999999 788999999874
No 315
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=32.73 E-value=1.1e+02 Score=27.63 Aligned_cols=62 Identities=18% Similarity=0.196 Sum_probs=48.8
Q ss_pred eCCHHHHHHHHHHHhh-CCCEEEE------ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCC-CCCHHHHHHHHH
Q 023816 36 DDSFVDRKVIERLLTI-SSCKVTA------VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-GMTGYELLKKIK 107 (276)
Q Consensus 36 dD~~~~~~~L~~~L~~-~g~~v~~------a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp-~~~G~ell~~Ir 107 (276)
+|..++...++++++. .|..|+. +.+..+|++.+ ....++=||+.=+-+ ..+|++.++++.
T Consensus 97 ~dg~iD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~ale~L-----------~~lG~~rILTSG~~~~a~~g~~~L~~Lv 165 (256)
T 1twd_A 97 VDGNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNL-----------AELGIARVLTSGQKSDALQGLSKIMELI 165 (256)
T ss_dssp TTSSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHH-----------HHHTCCEEEECTTSSSTTTTHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHhCCCcEEEECchhccCCHHHHHHHH-----------HHcCCCEEECCCCCCCHHHHHHHHHHHH
Confidence 5777888888888864 4678876 67889999998 556799999875444 478999999997
Q ss_pred h
Q 023816 108 V 108 (276)
Q Consensus 108 ~ 108 (276)
+
T Consensus 166 ~ 166 (256)
T 1twd_A 166 A 166 (256)
T ss_dssp T
T ss_pred H
Confidence 5
No 316
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=32.67 E-value=47 Score=28.64 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=23.8
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+|||+=-.=.+.+++.+|+++||+..-+
T Consensus 150 ~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 150 HIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp CCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred CCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 57887766667899999999999987655
No 317
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=32.66 E-value=29 Score=29.30 Aligned_cols=11 Identities=9% Similarity=0.377 Sum_probs=5.9
Q ss_pred HHHHHHHHHhh
Q 023816 99 GYELLKKIKVT 109 (276)
Q Consensus 99 G~ell~~Ir~~ 109 (276)
|.++++.||+.
T Consensus 46 G~~~i~~lr~~ 56 (218)
T 3jr2_A 46 GMKAVSTLRHN 56 (218)
T ss_dssp TTHHHHHHHHH
T ss_pred CHHHHHHHHHh
Confidence 45555555554
No 318
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=32.62 E-value=2e+02 Score=23.36 Aligned_cols=67 Identities=19% Similarity=0.147 Sum_probs=38.6
Q ss_pred EEeCCHHHHHHHHHHHhhCCCEEEEE-CCH--HHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhC
Q 023816 34 AVDDSFVDRKVIERLLTISSCKVTAV-DSG--RRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTT 110 (276)
Q Consensus 34 IVdD~~~~~~~L~~~L~~~g~~v~~a-~~g--~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~ 110 (276)
+...+|...+.+.+-+++.|++|... .+- ..--+.+. + |+....|+--.. ...+--+.+++|.+.+
T Consensus 7 vfssdpeilkeivreikrqgvrvvllysdqdekrrrerle---e-----fekqgvdvrtve---dkedfrenireiwery 75 (162)
T 2l82_A 7 VFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLE---E-----FEKQGVDVRTVE---DKEDFRENIREIWERY 75 (162)
T ss_dssp EEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHH---H-----HHTTTCEEEECC---SHHHHHHHHHHHHHHC
T ss_pred EecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHH---H-----HHHcCCceeeec---cHHHHHHHHHHHHHhC
Confidence 34677788888888888999988763 322 22222221 1 244556654322 1233446777787777
Q ss_pred C
Q 023816 111 P 111 (276)
Q Consensus 111 p 111 (276)
|
T Consensus 76 p 76 (162)
T 2l82_A 76 P 76 (162)
T ss_dssp T
T ss_pred C
Confidence 7
No 319
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=32.55 E-value=1.4e+02 Score=27.12 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=30.9
Q ss_pred CCeEEEEec--CCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHH
Q 023816 157 EIPVVIMSS--ENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLT 201 (276)
Q Consensus 157 ~ipiV~ls~--~~~~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~ 201 (276)
++-+|+++. ....+....|+++|..=|+.||+ +.++.+++++...
T Consensus 96 ~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~ 144 (412)
T 4gqa_A 96 QVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAAR 144 (412)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHHH
Confidence 344444433 33456788999999999999997 5566666665544
No 320
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=32.50 E-value=95 Score=27.01 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=23.1
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
++|||+.-+-.+.+++.++++.||+...
T Consensus 241 ~ipvia~GGI~~~~d~~~~l~~GAd~V~ 268 (311)
T 1ep3_A 241 DIPIIGMGGVANAQDVLEMYMAGASAVA 268 (311)
T ss_dssp SSCEEECSSCCSHHHHHHHHHHTCSEEE
T ss_pred CCCEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 6888877776788999999999988764
No 321
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=32.44 E-value=1.3e+02 Score=23.89 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=21.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEE
Q 023816 31 HVLAVDDSFVDRKVIERLLTISSCKVTA 58 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g~~v~~ 58 (276)
+|||+..+....+.+-+++..+||+|..
T Consensus 53 kiliisndkqllkemlelisklgykvfl 80 (134)
T 2lci_A 53 KILIISNDKQLLKEMLELISKLGYKVFL 80 (134)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHhCceeEE
Confidence 5788888887777777777778887765
No 322
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=32.40 E-value=2e+02 Score=25.24 Aligned_cols=75 Identities=12% Similarity=0.077 Sum_probs=52.3
Q ss_pred HhhCCCEEE-EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCC-CC-CHHHHHHHHHhhCCCCcccchheehhhh
Q 023816 49 LTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-GM-TGYELLKKIKVTTPFNFLYSTIIVFLNL 125 (276)
Q Consensus 49 L~~~g~~v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp-~~-~G~ell~~Ir~~~p~~~~~~~~~~~~~~ 125 (276)
.++.|..+. .+.+..|+.+.+ +..+|+|=+ .| +. .|.+.+|.++.-.|
T Consensus 123 ~~~~gi~~ipGv~TptEi~~A~------------~~Gad~vK~---FPa~~~gG~~~lkal~~p~p-------------- 173 (232)
T 4e38_A 123 CQEIGIDIVPGVNNPSTVEAAL------------EMGLTTLKF---FPAEASGGISMVKSLVGPYG-------------- 173 (232)
T ss_dssp HHHHTCEEECEECSHHHHHHHH------------HTTCCEEEE---CSTTTTTHHHHHHHHHTTCT--------------
T ss_pred HHHcCCCEEcCCCCHHHHHHHH------------HcCCCEEEE---CcCccccCHHHHHHHHHHhc--------------
Confidence 344576654 377888888876 235676655 45 33 38999999996444
Q ss_pred hhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 126 QNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
++|++ -++.-..+...+.+++|+....
T Consensus 174 -------------------------------~ip~~-ptGGI~~~n~~~~l~aGa~~~v 200 (232)
T 4e38_A 174 -------------------------------DIRLM-PTGGITPSNIDNYLAIPQVLAC 200 (232)
T ss_dssp -------------------------------TCEEE-EBSSCCTTTHHHHHTSTTBCCE
T ss_pred -------------------------------CCCee-eEcCCCHHHHHHHHHCCCeEEE
Confidence 67776 4666677889999999986544
No 323
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=32.37 E-value=2e+02 Score=24.05 Aligned_cols=30 Identities=13% Similarity=0.268 Sum_probs=25.6
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
.+|+++.-.-.+.+++.++++.||+..+.=
T Consensus 74 ~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 74 DIPFTVGGGIHDFETASELILRGADKVSIN 103 (253)
T ss_dssp CSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 589998888788899999999999887764
No 324
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=32.30 E-value=52 Score=28.47 Aligned_cols=36 Identities=6% Similarity=0.025 Sum_probs=21.7
Q ss_pred CCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 167 NILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 167 ~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
+-...+..+.++||+-...-......+.+.++.+..
T Consensus 75 ~p~~~i~~~~~aGad~itvH~Ea~~~~~~~i~~i~~ 110 (228)
T 3ovp_A 75 KPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRE 110 (228)
T ss_dssp CGGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHH
Confidence 334577888899997766654332334555555543
No 325
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=32.16 E-value=1.5e+02 Score=26.45 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=29.2
Q ss_pred CeEEEE--ecCCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHH
Q 023816 158 IPVVIM--SSENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLT 201 (276)
Q Consensus 158 ipiV~l--s~~~~~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~ 201 (276)
+-+|++ ......+....|+++|..=++.||+ +.++..++++...
T Consensus 72 ~D~V~i~tp~~~h~~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~ 119 (362)
T 1ydw_A 72 IDALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACE 119 (362)
T ss_dssp CCEEEECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHH
T ss_pred CCEEEEcCChHHHHHHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHH
Confidence 334444 3333456788899999988999997 4556666665544
No 326
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=32.09 E-value=55 Score=28.93 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHhcccccccccCCCCCceeEEEEecCCCCCC------HHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhcc
Q 023816 63 RRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT------GYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSIC 136 (276)
Q Consensus 63 ~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~------G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (276)
.++++.+ .+...|+|.+-. -+ .+++++++|+ .
T Consensus 23 ~~~~~~l-----------~~~GaD~ielG~----S~Gvt~~~~~~~v~~ir~--~------------------------- 60 (240)
T 1viz_A 23 DEQLEIL-----------CESGTDAVIIGG----SDGVTEDNVLRMMSKVRR--F------------------------- 60 (240)
T ss_dssp HHHHHHH-----------HTSCCSEEEECC--------CHHHHHHHHHHHTT--S-------------------------
T ss_pred HHHHHHH-----------HHcCCCEEEECC----CCCCCHHHHHHHHHHhhC--c-------------------------
Q ss_pred ccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 137 FCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++|+|+++... ..+..|++.||+
T Consensus 61 --------------------~~Pivlm~y~~------n~i~~G~dg~ii 83 (240)
T 1viz_A 61 --------------------LVPCVLEVSAI------EAIVPGFDLYFI 83 (240)
T ss_dssp --------------------SSCEEEECSCG------GGCCSCCSEEEE
T ss_pred --------------------CCCEEEecCcc------ccccCCCCEEEE
No 327
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=31.85 E-value=91 Score=29.92 Aligned_cols=51 Identities=8% Similarity=-0.030 Sum_probs=38.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCE-EEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCK-VTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~-v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
-+|..+|=++...+.+++-+++.|+. +.. ..+..+....+ ...||+||+|.
T Consensus 131 g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~------------~~~FD~Il~Da 183 (456)
T 3m4x_A 131 GLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHF------------SGFFDRIVVDA 183 (456)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHH------------TTCEEEEEEEC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhc------------cccCCEEEECC
Confidence 47999999999999999999988874 443 45666554433 34699999995
No 328
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=31.64 E-value=2e+02 Score=25.93 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=20.8
Q ss_pred eEEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 159 PVVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 159 piV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
..|..|+.-..+.+.+..+.|++-+.
T Consensus 242 v~ieaSGGIt~~~i~~~a~tGVD~is 267 (284)
T 1qpo_A 242 VMLESSGGLSLQTAATYAETGVDYLA 267 (284)
T ss_dssp CEEEEESSCCTTTHHHHHHTTCSEEE
T ss_pred eEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 45677888888899999999987664
No 329
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=31.60 E-value=75 Score=27.83 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=30.3
Q ss_pred CCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 156 REIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 156 ~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
..+|||+..... ..+.++.|-.+++..|-+.+++.+.+..+..
T Consensus 307 ~G~PvI~~~~~~----~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~ 349 (394)
T 2jjm_A 307 CGVPCIGTRVGG----IPEVIQHGDTGYLCEVGDTTGVADQAIQLLK 349 (394)
T ss_dssp TTCCEEEECCTT----STTTCCBTTTEEEECTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEecCCC----hHHHhhcCCceEEeCCCCHHHHHHHHHHHHc
Confidence 378887654332 2345566888999999999999777766654
No 330
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=31.58 E-value=2.9e+02 Score=24.85 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=33.3
Q ss_pred cccCCCCCeEEEEecCCCHHHHHHHHhcC---------CCeEEeCCCCHHHHHHHHHHHH
Q 023816 151 DSSALREIPVVIMSSENILARIDRCLEDG---------AEDFIVKPVKLSDVKRIKDYLT 201 (276)
Q Consensus 151 ~~~~~~~ipiV~ls~~~~~~~~~~al~~G---------a~d~l~KPv~~~~L~~~~~~l~ 201 (276)
-+.....+|||+... ....+.+..| ..+|+..|-+.++|.+.+..+.
T Consensus 383 lEAma~G~PvI~s~~----gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 438 (485)
T 1rzu_A 383 LYALRYGCIPVVART----GGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTV 438 (485)
T ss_dssp HHHHHHTCEEEEESS----HHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHH
T ss_pred HHHHHCCCCEEEeCC----CChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHH
Confidence 344444788887422 3455677777 8899999999999977666655
No 331
>3cni_A Putative ABC type-2 transporter; structural genomics, thermotoga MARI PSI-2, protein structure initiative; 2.30A {Thermotoga maritima MSB8}
Probab=31.58 E-value=49 Score=26.23 Aligned_cols=53 Identities=17% Similarity=0.077 Sum_probs=28.8
Q ss_pred CCCCccEEEEEeCC-HHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEE
Q 023816 25 SDTEEVHVLAVDDS-FVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLII 89 (276)
Q Consensus 25 ~~~~~~~VLIVdD~-~~~~~~L~~~L~~~g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL 89 (276)
.+...++|.|||.+ ...-+.+.+.|+ ...++.. ..+.++|.+.+ +.++++.+|
T Consensus 6 ~~~~~~~vaVvd~D~s~~s~~l~~~l~-~~~~~~~~~~s~~ea~~~l-----------~~g~~~~~l 60 (156)
T 3cni_A 6 KSTVGQKVAIVREDTGTIAELAEKALG-NMVDIVYAGSDLKEAEEAV-----------KKEKAPAII 60 (156)
T ss_dssp -----CEEEEEECCCSHHHHHHHHHHH-TSSEEEEEESCHHHHHHHH-----------HHHTCSEEE
T ss_pred CCCCCCcEEEEECCCCHHHHHHHHHhc-CcEEEEecCCCHHHHHHHH-----------HcCCeeEEE
Confidence 34567889998744 233344444555 3344332 46888888888 555666655
No 332
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=31.46 E-value=1.6e+02 Score=26.52 Aligned_cols=44 Identities=11% Similarity=0.208 Sum_probs=34.6
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
+.+|.+-.. ..+...+++++|++-.+...++.+++++++..+..
T Consensus 194 ~~~I~Vev~--t~eea~eal~aGaD~I~LDn~~~~~~~~~v~~l~~ 237 (284)
T 1qpo_A 194 DLPCEVEVD--SLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDS 237 (284)
T ss_dssp TSCEEEEES--SHHHHHHHGGGCCSEEEEETCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhc
Confidence 345555443 36889999999999888999999999888888765
No 333
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=31.46 E-value=1.6e+02 Score=25.73 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=10.7
Q ss_pred CceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 83 LKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 83 ~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
.++|.|++.. .+.+...+++.+++
T Consensus 197 ~~~dav~~~~--~~~~a~~~~~~~~~ 220 (392)
T 3lkb_A 197 AGVEYVVHQN--VAGPVANILKDAKR 220 (392)
T ss_dssp TTCCEEEEES--CHHHHHHHHHHHHH
T ss_pred cCCCEEEEec--CcchHHHHHHHHHH
Confidence 3466666432 12233444555544
No 334
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=31.30 E-value=1.8e+02 Score=22.51 Aligned_cols=44 Identities=7% Similarity=0.252 Sum_probs=32.3
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHhhh
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDVN 205 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~~~~ 205 (276)
.+|||+.. .....+.++.|-.+++. +-+.+++.+.+.++.....
T Consensus 121 G~PvI~~~----~~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~~~ 164 (177)
T 2f9f_A 121 GKPVIAVN----EGGFKETVINEKTGYLV-NADVNEIIDAMKKVSKNPD 164 (177)
T ss_dssp TCCEEEES----SHHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHCTT
T ss_pred CCcEEEeC----CCCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhCHH
Confidence 78887642 23455677778889999 9999999888777775443
No 335
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=31.24 E-value=2.5e+02 Score=24.07 Aligned_cols=53 Identities=11% Similarity=-0.070 Sum_probs=27.7
Q ss_pred HHHHHHHhhCCCEEEEE------CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 43 KVIERLLTISSCKVTAV------DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 43 ~~L~~~L~~~g~~v~~a------~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
+.+++.|+..|.++... .+....++.+ ....+|+|++.. .+.+...+++.+++
T Consensus 168 ~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l-----------~~~~~d~v~~~~--~~~~a~~~~~~~~~ 226 (366)
T 3td9_A 168 NFFINKFTELGGQVKRVFFRSGDQDFSAQLSVA-----------MSFNPDAIYITG--YYPEIALISRQARQ 226 (366)
T ss_dssp HHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHH-----------HHTCCSEEEECS--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHH-----------HhcCCCEEEEcc--chhHHHHHHHHHHH
Confidence 34555666667665432 2344555555 334577777632 12334455666654
No 336
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=31.23 E-value=1e+02 Score=28.22 Aligned_cols=53 Identities=17% Similarity=0.077 Sum_probs=39.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCE---EE-EECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 31 HVLAVDDSFVDRKVIERLLTISSCK---VT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g~~---v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
+|..||=++...+..++-++..|+. +. ...+..+.+..+.. .+..||+|++|-
T Consensus 237 ~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~---------~~~~fD~Ii~DP 293 (385)
T 2b78_A 237 ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARR---------HHLTYDIIIIDP 293 (385)
T ss_dssp EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHH---------TTCCEEEEEECC
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHH---------hCCCccEEEECC
Confidence 7999999999999999988877753 43 36777776655421 244799999984
No 337
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=31.20 E-value=90 Score=26.07 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=21.3
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++||+++-+- ..+.+.++++.|++.+-.
T Consensus 144 ~iPviaiGGI-~~~nv~~~~~~Ga~gVav 171 (210)
T 3ceu_A 144 DSKVMALGGI-NEDNLLEIKDFGFGGAVV 171 (210)
T ss_dssp STTEEEESSC-CTTTHHHHHHTTCSEEEE
T ss_pred CCCEEEECCC-CHHHHHHHHHhCCCEEEE
Confidence 6888876554 477888999999988743
No 338
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=31.15 E-value=64 Score=25.70 Aligned_cols=40 Identities=10% Similarity=-0.041 Sum_probs=26.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFL 69 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l 69 (276)
++|||..-.-..-..+.+.|...|++|..+....+.++.+
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~ 40 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQT 40 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHH
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhc
Confidence 4788888766666666666667799998865444444433
No 339
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=31.08 E-value=85 Score=26.24 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=18.2
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 161 VIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 161 V~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
|.+++.-..+...+++++||+-++.
T Consensus 166 i~v~GGI~~~~~~~~~~aGad~ivv 190 (216)
T 1q6o_A 166 VTVTGGLALEDLPLFKGIPIHVFIA 190 (216)
T ss_dssp EEEESSCCGGGGGGGTTSCCSEEEE
T ss_pred EEEECCcChhhHHHHHHcCCCEEEE
Confidence 4455555567788899999987765
No 340
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=31.06 E-value=1.3e+02 Score=27.50 Aligned_cols=58 Identities=7% Similarity=0.036 Sum_probs=44.5
Q ss_pred eeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEe
Q 023816 85 VDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMS 164 (276)
Q Consensus 85 ~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls 164 (276)
.++|.+|+.- .-...++++++++... ..+|+++=-
T Consensus 200 ~~lV~LD~~~-~~v~~e~V~~I~~~~~--------------------------------------------~~iPV~vGG 234 (286)
T 3vk5_A 200 FHMVYLYSRN-EHVPPEVVRHFRKGLG--------------------------------------------PDQVLFVSG 234 (286)
T ss_dssp CSEEEEECSS-SCCCHHHHHHHHHHSC--------------------------------------------TTCEEEEES
T ss_pred CCEEEEcCCC-CcCCHHHHHHHHHhcC--------------------------------------------CCCCEEEEe
Confidence 5899999754 3345689999987441 047888777
Q ss_pred cCCCHHHHHHHHhcCCCeEEeCC
Q 023816 165 SENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 165 ~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
+=.+.+.+.+++++||+..++--
T Consensus 235 GIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 235 NVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp SCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCCCHHHHHHHHHcCCCEEEECc
Confidence 77889999999999999998754
No 341
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=31.04 E-value=1.1e+02 Score=26.96 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=32.3
Q ss_pred ccCCCCCeEEEEecCCCHHHHHHHHhcCCC---------------eE--EeCCCCHHHHHHHHHHHHH
Q 023816 152 SSALREIPVVIMSSENILARIDRCLEDGAE---------------DF--IVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 152 ~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~---------------d~--l~KPv~~~~L~~~~~~l~~ 202 (276)
+.....+|||+-- .....+.+..|.+ ++ +..|-+.+++.+.+ .+..
T Consensus 292 EAma~G~PvI~s~----~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~ 354 (413)
T 3oy2_A 292 EGAVLGKPLIISA----VGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFK 354 (413)
T ss_dssp HHHTTTCCEEEEC----CHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTT
T ss_pred HHHHcCCCEEEcC----CCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhc
Confidence 4445578888632 2345567777777 88 99999999997777 6654
No 342
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=31.02 E-value=1.6e+02 Score=24.30 Aligned_cols=78 Identities=17% Similarity=0.041 Sum_probs=46.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCE--EE-EECCHHHHHHHhccc--ccccccCCCC--CceeEEEEecCCCCCCHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCK--VT-AVDSGRRALQFLGLD--EEQSINGFDG--LKVDLIITDYCMPGMTGYE 101 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~--v~-~a~~g~~al~~l~~~--~~~~~~~~~~--~~~DlIL~D~~mp~~~G~e 101 (276)
..+|..||-++...+..++.++..|+. +. ...+..+.+..+... ......+|.. ..||+|++|...+ +-.+
T Consensus 85 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~--~~~~ 162 (239)
T 2hnk_A 85 DGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKE--NYPN 162 (239)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGG--GHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHH--HHHH
Confidence 458999999999999999999887752 33 356666655433100 0000112222 5799999996432 2234
Q ss_pred HHHHHHh
Q 023816 102 LLKKIKV 108 (276)
Q Consensus 102 ll~~Ir~ 108 (276)
+++.+.+
T Consensus 163 ~l~~~~~ 169 (239)
T 2hnk_A 163 YYPLILK 169 (239)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 343
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=30.98 E-value=95 Score=25.30 Aligned_cols=33 Identities=12% Similarity=0.033 Sum_probs=25.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCH
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSG 62 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g 62 (276)
.+|+|||.-...-..+.+.|++.|+++..+.+.
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~ 33 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNH 33 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETT
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECC
Confidence 379999955456677788889999998876654
No 344
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=30.97 E-value=1.5e+02 Score=26.21 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=27.1
Q ss_pred ecCCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 023816 164 SSENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 202 (276)
Q Consensus 164 s~~~~~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~~ 202 (276)
......+....|+++|..=|+.||+ +.++..++++...+
T Consensus 75 p~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~ 115 (344)
T 3mz0_A 75 WGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIK 115 (344)
T ss_dssp CGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHH
Confidence 3344466777899999988899996 45566666665444
No 345
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=30.90 E-value=65 Score=31.03 Aligned_cols=51 Identities=10% Similarity=-0.022 Sum_probs=38.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
-+|..+|=++...+.+++-+++.|+.+.. ..+..+....+ ...||+||+|.
T Consensus 127 g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~------------~~~FD~Il~D~ 178 (464)
T 3m6w_A 127 GLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAF------------GTYFHRVLLDA 178 (464)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHH------------CSCEEEEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhc------------cccCCEEEECC
Confidence 47999999999999999999988876433 44555544333 34799999995
No 346
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=30.72 E-value=1.9e+02 Score=23.73 Aligned_cols=81 Identities=11% Similarity=0.037 Sum_probs=47.7
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHH-HH
Q 023816 24 PSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGY-EL 102 (276)
Q Consensus 24 ~~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~-el 102 (276)
+.....-+|||..-.--.-..+.+.|...|++|..+....+.++.+...-+. .......++.+|+...+.+.. ++
T Consensus 9 ~~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~d~d~~~~~~~~~~ 84 (247)
T 3i1j_A 9 PELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKS----AGQPQPLIIALNLENATAQQYREL 84 (247)
T ss_dssp TTTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----TTSCCCEEEECCTTTCCHHHHHHH
T ss_pred CccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHh----cCCCCceEEEeccccCCHHHHHHH
Confidence 3445566788888887888888888888899998865444433333111110 012345666677655554443 35
Q ss_pred HHHHHh
Q 023816 103 LKKIKV 108 (276)
Q Consensus 103 l~~Ir~ 108 (276)
.+++.+
T Consensus 85 ~~~~~~ 90 (247)
T 3i1j_A 85 AARVEH 90 (247)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 556654
No 347
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=30.70 E-value=1.1e+02 Score=23.07 Aligned_cols=67 Identities=7% Similarity=-0.011 Sum_probs=42.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 31 HVLAVDDSFVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
+|..||=++...+..++.++..+.++.. ..+..+.+..+.. ....||+|++|.-.- .+-.++++.+.
T Consensus 65 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~---------~~~~~D~i~~~~~~~-~~~~~~~~~~~ 132 (171)
T 1ws6_A 65 EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKA---------QGERFTVAFMAPPYA-MDLAALFGELL 132 (171)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHH---------TTCCEEEEEECCCTT-SCTTHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhc---------cCCceEEEEECCCCc-hhHHHHHHHHH
Confidence 4889999999999998888776644433 4455554443310 123699999994332 33345566665
No 348
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=30.63 E-value=49 Score=28.89 Aligned_cols=59 Identities=19% Similarity=0.208 Sum_probs=36.2
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEE--ecCCCCCCHH
Q 023816 23 SPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT--DYCMPGMTGY 100 (276)
Q Consensus 23 ~~~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~--D~~mp~~~G~ 100 (276)
+++.+++++|+++-|---+...++++|+ .+ ....+|.|++ |+.-.+-+..
T Consensus 5 ~~~~~~~~~i~~iSDiHg~~~~l~~vl~-----------------~~-----------~~~~~D~ii~~GDlv~~g~~~~ 56 (270)
T 3qfm_A 5 HHHHMDMTKIALLSDIHGNTTALEAVLA-----------------DA-----------RQLGVDEYWLLGDILMPGTGRR 56 (270)
T ss_dssp ------CEEEEEECCCTTCHHHHHHHHH-----------------HH-----------HHTTCCEEEECSCCSSSSSCSH
T ss_pred ccccccccEEEEEecCCCCHHHHHHHHH-----------------HH-----------HhcCCCEEEEcCCCCCCCCCHH
Confidence 4567889999999998887777776653 22 1224677665 6655555566
Q ss_pred HHHHHHHhh
Q 023816 101 ELLKKIKVT 109 (276)
Q Consensus 101 ell~~Ir~~ 109 (276)
++++.|++.
T Consensus 57 ~~~~~l~~~ 65 (270)
T 3qfm_A 57 RILDLLDQL 65 (270)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHcc
Confidence 778888753
No 349
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=30.54 E-value=1.7e+02 Score=25.47 Aligned_cols=46 Identities=22% Similarity=0.378 Sum_probs=30.4
Q ss_pred CCeEEEEecCCC--HHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENI--LARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 202 (276)
Q Consensus 157 ~ipiV~ls~~~~--~~~~~~al~~Ga~d~l~KPv--~~~~L~~~~~~l~~ 202 (276)
++-+|+++.... .+....|+++|..=++.||+ +.++..++.+...+
T Consensus 65 ~~D~V~i~tp~~~h~~~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~ 114 (319)
T 1tlt_A 65 SCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAAR 114 (319)
T ss_dssp TCSEEEECSCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCchhHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 344555544433 45677899999988899997 45666666655443
No 350
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=30.47 E-value=3.7e+02 Score=25.78 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=25.1
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
.+|||+--+=...+++.+|+++||+..+.=
T Consensus 334 ~iPVIa~GGI~~~~di~kala~GAd~V~iG 363 (496)
T 4fxs_A 334 GIPVIADGGIRFSGDISKAIAAGASCVMVG 363 (496)
T ss_dssp TCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCeEEec
Confidence 589988777788999999999999877653
No 351
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=30.47 E-value=1.3e+02 Score=25.30 Aligned_cols=70 Identities=14% Similarity=0.016 Sum_probs=39.8
Q ss_pred CCccEEEEEe-CCHHHH---HHHHHHHhhCCCEEEEEC--C---HHHHHHHhcccccccccCCCCCceeEEEEecCCCCC
Q 023816 27 TEEVHVLAVD-DSFVDR---KVIERLLTISSCKVTAVD--S---GRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM 97 (276)
Q Consensus 27 ~~~~~VLIVd-D~~~~~---~~L~~~L~~~g~~v~~a~--~---g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~ 97 (276)
+..+-|++ + +++... +.+++.+++.||++..+. + ..+.++.+ ...++|-||+--...
T Consensus 12 ~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l-----------~~~~vdgiIi~~~~~-- 77 (289)
T 3k9c_A 12 SRLLGVVF-ELQQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQAL-----------MRERCEAAILLGTRF-- 77 (289)
T ss_dssp -CEEEEEE-ETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHH-----------TTTTEEEEEEETCCC--
T ss_pred CCEEEEEE-ecCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHH-----------HhCCCCEEEEECCCC--
Confidence 33455555 4 344443 446677788899887643 2 34566666 566788777653222
Q ss_pred CHHHHHHHHHhhCC
Q 023816 98 TGYELLKKIKVTTP 111 (276)
Q Consensus 98 ~G~ell~~Ir~~~p 111 (276)
+. +.++.+++.-|
T Consensus 78 ~~-~~~~~~~~~iP 90 (289)
T 3k9c_A 78 DT-DELGALADRVP 90 (289)
T ss_dssp CH-HHHHHHHTTSC
T ss_pred CH-HHHHHHHcCCC
Confidence 22 66666665344
No 352
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=30.38 E-value=23 Score=31.63 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=14.9
Q ss_pred CCceeEEEEecCCCCCCH-----HHHHHHHHh
Q 023816 82 GLKVDLIITDYCMPGMTG-----YELLKKIKV 108 (276)
Q Consensus 82 ~~~~DlIL~D~~mp~~~G-----~ell~~Ir~ 108 (276)
...||+|++|..-|.... .++++.+++
T Consensus 155 ~~~fDvIi~D~~~p~~~~~~l~~~~f~~~~~~ 186 (294)
T 3adn_A 155 SQTFDVIISDCTDPIGPGESLFTSAFYEGCKR 186 (294)
T ss_dssp CCCEEEEEECC----------CCHHHHHHHHH
T ss_pred CCCccEEEECCCCccCcchhccHHHHHHHHHH
Confidence 357999999986553222 556666654
No 353
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=30.34 E-value=1.3e+02 Score=27.83 Aligned_cols=63 Identities=19% Similarity=0.115 Sum_probs=43.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhC---------------CCE-EEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEe
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTIS---------------SCK-VTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~---------------g~~-v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D 91 (276)
..+|..+|=++...+.+++-++.. |.. +.. ..+..+.+..+ ...||+|++|
T Consensus 71 ~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~------------~~~fD~I~lD 138 (378)
T 2dul_A 71 AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER------------HRYFHFIDLD 138 (378)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS------------TTCEEEEEEC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHhc------------cCCCCEEEeC
Confidence 357999999999999999998877 653 443 56776665543 2369999988
Q ss_pred cCCCCCCHHHHHHHH
Q 023816 92 YCMPGMTGYELLKKI 106 (276)
Q Consensus 92 ~~mp~~~G~ell~~I 106 (276)
- |+ +..++++..
T Consensus 139 P--~~-~~~~~l~~a 150 (378)
T 2dul_A 139 P--FG-SPMEFLDTA 150 (378)
T ss_dssp C--SS-CCHHHHHHH
T ss_pred C--CC-CHHHHHHHH
Confidence 4 33 334555543
No 354
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=30.03 E-value=1.3e+02 Score=24.18 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=39.3
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 24 PSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 24 ~~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
..+..+ +|-++..... ...|+..+.++..+.+..++++.+ ..++.|.++.|.
T Consensus 102 ~~dL~g-~igv~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~L-----------~~GrvDa~i~~~ 153 (232)
T 3i6v_A 102 GADLSG-IVAAQTATIQ-----AGYIAESGATLVEFATPEETIAAV-----------RNGEADAVFADR 153 (232)
T ss_dssp TCCTTS-EEEEETTSHH-----HHHHHHSSSEEEEESSHHHHHHHH-----------HTTSSSEEEEEH
T ss_pred hHHhCC-CEEEecCchH-----HHHHHhcCCeEEEeCCHHHHHHHH-----------HcCCcCEEEECh
Confidence 345567 8877766643 233444489999999999999999 778899999985
No 355
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=29.95 E-value=1.2e+02 Score=25.09 Aligned_cols=53 Identities=8% Similarity=0.106 Sum_probs=29.3
Q ss_pred HHHHHHHHhhCCCEEEEECCH------HHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 42 RKVIERLLTISSCKVTAVDSG------RRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 42 ~~~L~~~L~~~g~~v~~a~~g------~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
.+.+++.+++.||++...... .+.++.+ ...++|-||+- |....-+.++++++
T Consensus 32 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~vdgiIi~---~~~~~~~~~~~l~~ 90 (292)
T 3k4h_A 32 IRGISSFAHVEGYALYMSTGETEEEIFNGVVKMV-----------QGRQIGGIILL---YSRENDRIIQYLHE 90 (292)
T ss_dssp HHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHH-----------HTTCCCEEEES---CCBTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHH-----------HcCCCCEEEEe---CCCCChHHHHHHHH
Confidence 444667778889988875432 1233333 45678877752 21111256666654
No 356
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=29.81 E-value=1e+02 Score=24.06 Aligned_cols=54 Identities=15% Similarity=0.094 Sum_probs=38.9
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 25 SDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 25 ~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
.+..+.+|.++..... ...+++.+ .+.++..+.+..++++.+ ..++.|.++.|.
T Consensus 108 ~dL~g~~v~~~~g~~~-~~~l~~~~--~~~~~~~~~~~~~~~~~l-----------~~grvDa~~~~~ 161 (229)
T 2y7i_A 108 ADLKGKKVGLENGTTH-QRYLQDKQ--QAITPVAYDSYLNAFTDL-----------KNNRLEGVFGDV 161 (229)
T ss_dssp GGGTTCEEEEETTSHH-HHHHHHHC--TTSEEEEESCHHHHHHHH-----------HTTSCSEEEEEH
T ss_pred HHHCCCEEEEecCCcH-HHHHHHhC--CCCeEEecCCHHHHHHHH-----------HcCCcCEEEech
Confidence 4445678877766554 33343332 267888999999999999 678899999984
No 357
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=29.76 E-value=3.4e+02 Score=25.06 Aligned_cols=44 Identities=14% Similarity=-0.074 Sum_probs=30.0
Q ss_pred CeEEEEe--cCCCHHHHHHHHhcCCCeEEeCCCC--HHHHHHHHHHHH
Q 023816 158 IPVVIMS--SENILARIDRCLEDGAEDFIVKPVK--LSDVKRIKDYLT 201 (276)
Q Consensus 158 ipiV~ls--~~~~~~~~~~al~~Ga~d~l~KPv~--~~~L~~~~~~l~ 201 (276)
+-+|+++ .....+...+|+++|..=|+.||+. .++..++++...
T Consensus 92 vD~V~i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~ 139 (444)
T 2ixa_A 92 IDAVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSE 139 (444)
T ss_dssp CCEEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHH
T ss_pred CCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHH
Confidence 4444443 3334567788999999999999974 666666665544
No 358
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=29.75 E-value=1.5e+02 Score=27.02 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=39.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC--EEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSC--KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~--~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
-+|..||-++...+..++-++..|. .+.. ..+..+.+..+.. ....||+|++|.
T Consensus 241 ~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~---------~~~~fD~Vi~dp 297 (396)
T 2as0_A 241 DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQK---------KGEKFDIVVLDP 297 (396)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH---------TTCCEEEEEECC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHh---------hCCCCCEEEECC
Confidence 4899999999999999999888776 3443 6677766554411 245799999984
No 359
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=29.72 E-value=1.9e+02 Score=26.98 Aligned_cols=90 Identities=16% Similarity=0.139 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhCCCEEEE--ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCC-----CCCHHHHHHHHHhhCCC
Q 023816 40 VDRKVIERLLTISSCKVTA--VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-----GMTGYELLKKIKVTTPF 112 (276)
Q Consensus 40 ~~~~~L~~~L~~~g~~v~~--a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp-----~~~G~ell~~Ir~~~p~ 112 (276)
...+.++.+-+..+..+.. +.+.++|.... +..+|.|.+.-+-. +...++++.++++.-.
T Consensus 239 ~~~~~i~~lr~~~~~PvivKgv~~~e~A~~a~------------~aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~- 305 (392)
T 2nzl_A 239 ISWEDIKWLRRLTSLPIVAKGILRGDDAREAV------------KHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVE- 305 (392)
T ss_dssp CCHHHHHHHC--CCSCEEEEEECCHHHHHHHH------------HTTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhhCCCEEEEecCCHHHHHHHH------------HcCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcC-
Confidence 3455566555555554443 67777766554 34578887753211 2345667777764211
Q ss_pred CcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 113 NFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
..+|||+-.+-....++.+++..||+....
T Consensus 306 -------------------------------------------~~ipVia~GGI~~g~Dv~kalalGAd~V~i 335 (392)
T 2nzl_A 306 -------------------------------------------GKVEVFLDGGVRKGTDVLKALALGAKAVFV 335 (392)
T ss_dssp -------------------------------------------TSSEEEECSSCCSHHHHHHHHHTTCSEEEE
T ss_pred -------------------------------------------CCCEEEEECCCCCHHHHHHHHHhCCCeeEE
Confidence 158998888888899999999999988754
No 360
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=29.44 E-value=1.7e+02 Score=26.60 Aligned_cols=54 Identities=24% Similarity=0.221 Sum_probs=39.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCE-EE-EECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCK-VT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~-v~-~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
.+|..||-++...+..++-++..|+. +. ...+..+.+..+.. ....||+|++|.
T Consensus 232 ~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~---------~~~~fD~Ii~dp 287 (382)
T 1wxx_A 232 REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEK---------EGERFDLVVLDP 287 (382)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHH---------TTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHh---------cCCCeeEEEECC
Confidence 47999999999999999988877753 33 36677766654411 245799999985
No 361
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=29.26 E-value=64 Score=27.68 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=23.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCC
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSC 54 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~ 54 (276)
.-+|.-||-|+...+..++.++..|+
T Consensus 51 ~g~VvtvE~d~~~~~~ar~~l~~~g~ 76 (202)
T 3cvo_A 51 GKHVTSVESDRAWARMMKAWLAANPP 76 (202)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHSCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 35899999999999999999999886
No 362
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=29.18 E-value=1.6e+02 Score=25.04 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=43.9
Q ss_pred ccEEEEEeCC------HHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCH
Q 023816 29 EVHVLAVDDS------FVDRKVIERLLTISSCKVTAV---DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG 99 (276)
Q Consensus 29 ~~~VLIVdD~------~~~~~~L~~~L~~~g~~v~~a---~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G 99 (276)
.-+|++|+-. ..+...+.+.|+..|+++..+ .+..+.++. .|.|+ +|+.+.
T Consensus 31 ~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~~----------------ad~I~----lpGG~~ 90 (229)
T 1fy2_A 31 RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEK----------------AEIII----VGGGNT 90 (229)
T ss_dssp CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHHH----------------CSEEE----ECCSCH
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHhc----------------CCEEE----ECCCcH
Confidence 4688998633 367777888999999998887 443343432 36665 578999
Q ss_pred HHHHHHHHhh
Q 023816 100 YELLKKIKVT 109 (276)
Q Consensus 100 ~ell~~Ir~~ 109 (276)
..+++.+++.
T Consensus 91 ~~~~~~l~~~ 100 (229)
T 1fy2_A 91 FQLLKESRER 100 (229)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHC
Confidence 9999999873
No 363
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=29.17 E-value=2.2e+02 Score=26.25 Aligned_cols=92 Identities=15% Similarity=0.143 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhhCCCEEEE--ECCHHHHHHHhcccccccccCCCCCceeEEEEecC----CC-CCCHHHHHHHHHhhCC
Q 023816 39 FVDRKVIERLLTISSCKVTA--VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC----MP-GMTGYELLKKIKVTTP 111 (276)
Q Consensus 39 ~~~~~~L~~~L~~~g~~v~~--a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~----mp-~~~G~ell~~Ir~~~p 111 (276)
....+.++.+-+..+..+.. +.+.++|.... +...|.|.+.-+ +. +...++++.++++.-+
T Consensus 215 ~~~~~~i~~lr~~~~~PvivK~v~~~e~a~~a~------------~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~ 282 (368)
T 2nli_A 215 KISPRDIEEIAGHSGLPVFVKGIQHPEDADMAI------------KRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVN 282 (368)
T ss_dssp BCCHHHHHHHHHHSSSCEEEEEECSHHHHHHHH------------HTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHH------------HcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhC
Confidence 34455666665555654443 67777776554 345777776532 11 2345677777775221
Q ss_pred CCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 112 FNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
..+|||+-.+-....++.+++..||+....=
T Consensus 283 --------------------------------------------~~ipVia~GGI~~g~D~~kalalGAd~V~iG 313 (368)
T 2nli_A 283 --------------------------------------------KRVPIVFDSGVRRGEHVAKALASGADVVALG 313 (368)
T ss_dssp --------------------------------------------TSSCEEECSSCCSHHHHHHHHHTTCSEEEEC
T ss_pred --------------------------------------------CCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 1589998888889999999999999888653
No 364
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=28.99 E-value=58 Score=30.25 Aligned_cols=52 Identities=25% Similarity=0.178 Sum_probs=36.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
.+|..+|-++...+.+++.+++.|..+.. ..+..+....+ ....||+||+|.
T Consensus 271 ~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~-----------~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 271 AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWC-----------GEQQFDRILLDA 323 (429)
T ss_dssp CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHH-----------TTCCEEEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhc-----------ccCCCCEEEEeC
Confidence 58999999999999999999888764433 33433322222 345799999995
No 365
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=28.98 E-value=56 Score=24.75 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=24.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHh
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFL 69 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l 69 (276)
.+|+|+.-..+ -..+.+.|...|++|..++.-.+.++.+
T Consensus 7 ~~v~I~G~G~i-G~~la~~L~~~g~~V~~id~~~~~~~~~ 45 (141)
T 3llv_A 7 YEYIVIGSEAA-GVGLVRELTAAGKKVLAVDKSKEKIELL 45 (141)
T ss_dssp CSEEEECCSHH-HHHHHHHHHHTTCCEEEEESCHHHHHHH
T ss_pred CEEEEECCCHH-HHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence 46777777654 4445555666788887776655555544
No 366
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=28.83 E-value=2.8e+02 Score=23.80 Aligned_cols=58 Identities=9% Similarity=0.139 Sum_probs=34.2
Q ss_pred HHHHHHhhCCC-EEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCC
Q 023816 44 VIERLLTISSC-KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTP 111 (276)
Q Consensus 44 ~L~~~L~~~g~-~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p 111 (276)
.+.+.|+..++ -|....+.+++++.+... ....+++|=+. +-..++.+.++++++..|
T Consensus 18 ~~~~~l~~~~ii~V~r~~~~~~~~~~~~al--------~~gGv~~iel~--~k~~~~~~~i~~l~~~~~ 76 (225)
T 1mxs_A 18 RIDAICEKARILPVITIAREEDILPLADAL--------AAGGIRTLEVT--LRSQHGLKAIQVLREQRP 76 (225)
T ss_dssp HHHHHHHHHSEEEEECCSCGGGHHHHHHHH--------HHTTCCEEEEE--SSSTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHCCEEEEEeCCCHHHHHHHHHHH--------HHCCCCEEEEe--cCCccHHHHHHHHHHhCc
Confidence 34445555554 344456666666665322 23346666555 345678899998887665
No 367
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=28.77 E-value=60 Score=30.01 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=24.2
Q ss_pred CCeEEEEecCC--CHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSEN--ILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~--~~~~~~~al~~Ga~d~l~K 186 (276)
.+|||++.... .+++..++++.||+..++=
T Consensus 198 ~IPVV~IAnGGI~TpedA~~~le~GaDGVmVG 229 (291)
T 3o07_A 198 KLPVVNFAAGGVATPADAALLMQLGCDGVFVG 229 (291)
T ss_dssp SCSSCEEBCSSCCSHHHHHHHHHTTCSCEEEC
T ss_pred CCCEEEecCCCCCCHHHHHHHHHhCCCEEEEc
Confidence 68998875544 4889999999999998753
No 368
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=28.66 E-value=1.3e+02 Score=28.04 Aligned_cols=58 Identities=12% Similarity=0.159 Sum_probs=39.7
Q ss_pred CCceeEEEEecCCCC-CCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeE
Q 023816 82 GLKVDLIITDYCMPG-MTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPV 160 (276)
Q Consensus 82 ~~~~DlIL~D~~mp~-~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipi 160 (276)
+..+|+|.+|..-.. ..-.+.++++++..| +++|
T Consensus 118 eaGvd~I~idta~G~~~~~~~~I~~ik~~~p---------------------------------------------~v~V 152 (366)
T 4fo4_A 118 EAGVDVLLIDSSHGHSEGVLQRIRETRAAYP---------------------------------------------HLEI 152 (366)
T ss_dssp HTTCSEEEEECSCTTSHHHHHHHHHHHHHCT---------------------------------------------TCEE
T ss_pred hCCCCEEEEeCCCCCCHHHHHHHHHHHHhcC---------------------------------------------CCce
Confidence 346899988863221 123567888887666 6777
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 161 VIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 161 V~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++-+. ...+....+.++||+....
T Consensus 153 i~G~v-~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 153 IGGNV-ATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp EEEEE-CSHHHHHHHHHHTCSEEEE
T ss_pred Eeeee-CCHHHHHHHHHcCCCEEEE
Confidence 66332 4567788899999987776
No 369
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=28.12 E-value=1.3e+02 Score=25.05 Aligned_cols=95 Identities=16% Similarity=0.193 Sum_probs=0.0
Q ss_pred EEEEeC--CHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHH------
Q 023816 32 VLAVDD--SFVDRKVIERLLTISSCKVTAV---DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGY------ 100 (276)
Q Consensus 32 VLIVdD--~~~~~~~L~~~L~~~g~~v~~a---~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~------ 100 (276)
|.+-.+ .......+.+.++..|..+... .+..+.++.+ ....|.|+++-.-|+.+|.
T Consensus 95 v~vh~~~~~~~~~~~~~~~~~~~g~~ig~~~~p~t~~e~~~~~------------~~~~d~vl~~~~~pg~~g~~~~~~~ 162 (230)
T 1rpx_A 95 VSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYV------------LDAVDLVLIMSVNPGFGGQSFIESQ 162 (230)
T ss_dssp EEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTT------------TTTCSEEEEESSCTTCSSCCCCTTH
T ss_pred EEEEecCccchhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH------------HhhCCEEEEEEEcCCCCCccccHHH
Q ss_pred -HHHHHHHhhC-----CCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHH
Q 023816 101 -ELLKKIKVTT-----PFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDR 174 (276)
Q Consensus 101 -ell~~Ir~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~ 174 (276)
+.++++|+.. . ..+++.+.-..+.+.+
T Consensus 163 ~~~i~~l~~~~~~~~~~-----------------------------------------------~pi~v~GGI~~~n~~~ 195 (230)
T 1rpx_A 163 VKKISDLRKICAERGLN-----------------------------------------------PWIEVDGGVGPKNAYK 195 (230)
T ss_dssp HHHHHHHHHHHHHHTCC-----------------------------------------------CEEEEESSCCTTTHHH
T ss_pred HHHHHHHHHHHHhcCCC-----------------------------------------------ceEEEECCCCHHHHHH
Q ss_pred HHhcCCCeEEe
Q 023816 175 CLEDGAEDFIV 185 (276)
Q Consensus 175 al~~Ga~d~l~ 185 (276)
++++||+.+..
T Consensus 196 ~~~aGad~vvv 206 (230)
T 1rpx_A 196 VIEAGANALVA 206 (230)
T ss_dssp HHHHTCCEEEE
T ss_pred HHHcCCCEEEE
No 370
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=27.88 E-value=88 Score=28.26 Aligned_cols=53 Identities=19% Similarity=0.130 Sum_probs=37.3
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCE---EEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 31 HVLAVDDSFVDRKVIERLLTISSCK---VTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g~~---v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
+|..||-++...+..++-++..|+. +.. ..+..+.+..+.. ....||+|++|.
T Consensus 177 ~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~---------~~~~fD~Ii~dP 233 (332)
T 2igt_A 177 EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREER---------RGSTYDIILTDP 233 (332)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHH---------HTCCBSEEEECC
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHh---------cCCCceEEEECC
Confidence 8999999999999998888776642 433 5566665543310 134799999984
No 371
>2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli}
Probab=27.75 E-value=62 Score=26.17 Aligned_cols=48 Identities=23% Similarity=0.218 Sum_probs=38.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
+.+.+|+==-++..|+.+.+.|..+|-.+...+. .. -...+|++|+|-
T Consensus 6 dgVt~lLdIts~Eir~IV~~~L~~~GA~~i~~de------r~-----------~~~eyDi~lTDn 53 (117)
T 2kx7_A 6 DDVCVMVDVTSAEIRNIVTRQLENWGATCITPDE------RL-----------ISQDYDIFLTDN 53 (117)
T ss_dssp SSEEEEEECSSHHHHHHHHHHHHHHTEEEECCCS------SS-----------SCCCCSEEEEES
T ss_pred cCcEEEEEcCcHHHHHHHHHHHHhcCCeEEeccc------cC-----------CCCcccEEEecC
Confidence 4678888778999999999999999988876642 11 466799999995
No 372
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=27.43 E-value=2.8e+02 Score=23.62 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=38.9
Q ss_pred eCCHHH---HHHHHHHHhhCCCEEEE---E----CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 36 DDSFVD---RKVIERLLTISSCKVTA---V----DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 36 dD~~~~---~~~L~~~L~~~g~~v~~---a----~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
+|+..- .+.+++.|+..|.++.. . .+....++.+ ....+|+|++.. .+.+...+++.
T Consensus 147 ~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l-----------~~~~~d~v~~~~--~~~~a~~~~~~ 213 (368)
T 4eyg_A 147 SDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRM-----------KDAKPDAMFVFV--PAGQGGNFMKQ 213 (368)
T ss_dssp ESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHH-----------HHHCCSEEEEEC--CTTCHHHHHHH
T ss_pred cCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHH-----------HhcCCCEEEEec--cchHHHHHHHH
Confidence 455443 34566777778877653 1 2456666666 344689998854 34477888888
Q ss_pred HHhh
Q 023816 106 IKVT 109 (276)
Q Consensus 106 Ir~~ 109 (276)
+++.
T Consensus 214 ~~~~ 217 (368)
T 4eyg_A 214 FAER 217 (368)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8864
No 373
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=27.35 E-value=60 Score=30.78 Aligned_cols=10 Identities=20% Similarity=0.282 Sum_probs=8.6
Q ss_pred CceeEEEEec
Q 023816 83 LKVDLIITDY 92 (276)
Q Consensus 83 ~~~DlIL~D~ 92 (276)
..+|+||+|.
T Consensus 182 ~~~D~VIIDT 191 (433)
T 2xxa_A 182 KFYDVLLVDT 191 (433)
T ss_dssp TTCSEEEEEC
T ss_pred CCCCEEEEEC
Confidence 4689999998
No 374
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=27.34 E-value=3.7e+02 Score=24.83 Aligned_cols=29 Identities=10% Similarity=-0.104 Sum_probs=25.0
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+|||+-.+-....++.+++..||+....
T Consensus 267 ~ipvia~GGI~~~~d~~kal~lGA~~v~i 295 (368)
T 3vkj_A 267 DSFLVGSGGIRSGLDAAKAIALGADIAGM 295 (368)
T ss_dssp TCEEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 58888887778899999999999988765
No 375
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=27.20 E-value=44 Score=27.46 Aligned_cols=37 Identities=14% Similarity=-0.028 Sum_probs=25.9
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECC
Q 023816 25 SDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDS 61 (276)
Q Consensus 25 ~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~ 61 (276)
......+|||..-.-..-..+.+.|...|++|..+..
T Consensus 17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R 53 (236)
T 3e8x_A 17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVR 53 (236)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Confidence 4456779999998777777777777778999988553
No 376
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=27.17 E-value=1.3e+02 Score=28.08 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=37.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCE--EEEECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCK--VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~--v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
.+|..||=++...+..++-++..|+. +. ..+..+.+..+ .+. ||+|++|.
T Consensus 237 a~V~avDis~~al~~a~~n~~~ng~~~~~~-~~D~~~~l~~~-----------~~~-fD~Ii~dp 288 (393)
T 4dmg_A 237 AYALAVDKDLEALGVLDQAALRLGLRVDIR-HGEALPTLRGL-----------EGP-FHHVLLDP 288 (393)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCCCEEE-ESCHHHHHHTC-----------CCC-EEEEEECC
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCCcEE-EccHHHHHHHh-----------cCC-CCEEEECC
Confidence 34999999999999999988877764 43 66766655544 333 99999993
No 377
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=27.14 E-value=60 Score=25.82 Aligned_cols=58 Identities=24% Similarity=0.193 Sum_probs=35.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEE-EEECCHH---HHHHHhcccccccccCCCCCceeEEEEec
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKV-TAVDSGR---RALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v-~~a~~g~---~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
.+..+|+++.|+....-.+.+.|... +.+ -..-+|. +.+..+.. .+...+||+|++-+
T Consensus 32 ~~~~~i~~~GDSit~g~~~~~~l~~~-~~v~n~g~~G~~~~~~~~~l~~-------~~~~~~pd~vvi~~ 93 (214)
T 2hsj_A 32 VVEPNILFIGDSIVEYYPLQELFGTS-KTIVNRGIRGYQTGLLLENLDA-------HLYGGAVDKIFLLI 93 (214)
T ss_dssp SSCCSEEEEESHHHHTCCHHHHHCSS-SCEEEEECTTCCHHHHHHTGGG-------GCCCSCCCEEEEEC
T ss_pred cccCCEEEEecchhcCCCHHHHcCCc-ceEEecCccchhHHHHHHHhhH-------HHHhcCCCEEEEEE
Confidence 34678999999988766677777543 333 3344443 44444421 12455799999865
No 378
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=27.00 E-value=66 Score=27.33 Aligned_cols=70 Identities=13% Similarity=0.003 Sum_probs=45.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCC--EEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~--~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~ 105 (276)
..+|..||-++...+..++.++..|. ++.. ..+..+.+..+.... ....||+|++|.. ..+-.++++.
T Consensus 85 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~-------~~~~fD~V~~d~~--~~~~~~~l~~ 155 (242)
T 3r3h_A 85 DGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEG-------GEHQFDFIFIDAD--KTNYLNYYEL 155 (242)
T ss_dssp TCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHH-------CSSCEEEEEEESC--GGGHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhcc-------CCCCEeEEEEcCC--hHHhHHHHHH
Confidence 46899999988888888888887775 3443 667777666541100 1357999999964 2233344555
Q ss_pred HH
Q 023816 106 IK 107 (276)
Q Consensus 106 Ir 107 (276)
+.
T Consensus 156 ~~ 157 (242)
T 3r3h_A 156 AL 157 (242)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 379
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=26.92 E-value=2.9e+02 Score=24.20 Aligned_cols=37 Identities=16% Similarity=0.045 Sum_probs=20.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQ 67 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~ 67 (276)
.-||+|+.-...-+.+. +.|...|+ ++.++.-.+.++
T Consensus 115 ~~~viI~G~G~~g~~l~-~~L~~~g~-v~vid~~~~~~~ 151 (336)
T 1lnq_A 115 SRHVVICGWSESTLECL-RELRGSEV-FVLAEDENVRKK 151 (336)
T ss_dssp -CEEEEESCCHHHHHHH-TTGGGSCE-EEEESCGGGHHH
T ss_pred cCCEEEECCcHHHHHHH-HHHHhCCc-EEEEeCChhhhh
Confidence 34677777665554433 34455666 666665544444
No 380
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=26.86 E-value=3.1e+02 Score=23.65 Aligned_cols=66 Identities=18% Similarity=0.070 Sum_probs=41.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhC------------CCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCC
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTIS------------SCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~------------g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp 95 (276)
..+|..||=++...+..++.+ .. +-++.. ..++.+.+.. ...||+|++|.--|
T Consensus 98 ~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-------------~~~fD~Ii~d~~~~ 163 (281)
T 1mjf_A 98 VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-------------NRGFDVIIADSTDP 163 (281)
T ss_dssp CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-------------CCCEEEEEEECCCC
T ss_pred CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-------------cCCeeEEEECCCCC
Confidence 468999999999999888877 32 223332 5666554432 23699999997544
Q ss_pred CC-----CHHHHHHHHHh
Q 023816 96 GM-----TGYELLKKIKV 108 (276)
Q Consensus 96 ~~-----~G~ell~~Ir~ 108 (276)
.. ...++++.+++
T Consensus 164 ~~~~~~l~~~~~l~~~~~ 181 (281)
T 1mjf_A 164 VGPAKVLFSEEFYRYVYD 181 (281)
T ss_dssp C-----TTSHHHHHHHHH
T ss_pred CCcchhhhHHHHHHHHHH
Confidence 21 12456666654
No 381
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=26.46 E-value=35 Score=30.51 Aligned_cols=58 Identities=22% Similarity=0.131 Sum_probs=29.6
Q ss_pred CCCCCCcceeeeccccCCCCCCCCCCCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC
Q 023816 1 MTTTNGVASLRLISDEIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVD 60 (276)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~ 60 (276)
|.|++|-.-....-+++...... ...+.+|||..-.-..-..+.+.|...|++|....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~ 60 (379)
T 2c5a_A 3 MGTTNGTDYGAYTYKELEREQYW--PSENLKISITGAGGFIASHIARRLKHEGHYVIASD 60 (379)
T ss_dssp ------------CCTTCCCCCSC--TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCccCCcchhhhhHHHHhccccc--cccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEE
Confidence 45555544444444555442211 12356899999877777777666766799988754
No 382
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=26.40 E-value=95 Score=29.31 Aligned_cols=66 Identities=18% Similarity=0.209 Sum_probs=48.6
Q ss_pred CHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCC
Q 023816 61 SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFP 140 (276)
Q Consensus 61 ~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (276)
|.+||++.+.+|.+ ..-|+|..= |++.-+++++++|...|
T Consensus 241 N~~EAlre~~~Di~--------EGAD~vMVK---Pal~YLDIi~~vk~~~p----------------------------- 280 (342)
T 1h7n_A 241 GRGLARRALERDMS--------EGADGIIVK---PSTFYLDIMRDASEICK----------------------------- 280 (342)
T ss_dssp CHHHHHHHHHHHHH--------TTCSEEEEE---SSGGGHHHHHHHHHHTT-----------------------------
T ss_pred CHHHHHHHHHhhHH--------hCCCeEEEe---cCccHHHHHHHHHHhcc-----------------------------
Confidence 67888888766654 356888765 78888999999998876
Q ss_pred cCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCe
Q 023816 141 FFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAED 182 (276)
Q Consensus 141 ~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d 182 (276)
.+|+.+.--+..-..+..|-+.|..|
T Consensus 281 ----------------~~P~aaYqVSGEYAMikaAa~~GwiD 306 (342)
T 1h7n_A 281 ----------------DLPICAYHVSGEYAMLHAAAEKGVVD 306 (342)
T ss_dssp ----------------TSCEEEEECHHHHHHHHHHHHTTSSC
T ss_pred ----------------CCCeEEEEcCcHHHHHHHHHHcCCcc
Confidence 78888876666666666666666544
No 383
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=26.11 E-value=1.2e+02 Score=26.88 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=23.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECC
Q 023816 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDS 61 (276)
Q Consensus 28 ~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~ 61 (276)
...+|||+.....-+ .+.+.+++.|+++..++.
T Consensus 10 ~~~~ili~g~g~~~~-~~~~a~~~~G~~v~~~~~ 42 (391)
T 1kjq_A 10 AATRVMLLGSGELGK-EVAIECQRLGVEVIAVDR 42 (391)
T ss_dssp TCCEEEEESCSHHHH-HHHHHHHTTTCEEEEEES
T ss_pred CCCEEEEECCCHHHH-HHHHHHHHcCCEEEEEEC
Confidence 357999998775444 445566889999887654
No 384
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=26.08 E-value=3.7e+02 Score=24.35 Aligned_cols=28 Identities=11% Similarity=0.103 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+|||+--+-.+.+++.++++ ||+....
T Consensus 197 ~iPVianGgI~s~eda~~~l~-GaD~V~i 224 (350)
T 3b0p_A 197 QLTFVTNGGIRSLEEALFHLK-RVDGVML 224 (350)
T ss_dssp TSEEEEESSCCSHHHHHHHHT-TSSEEEE
T ss_pred CCeEEEECCcCCHHHHHHHHh-CCCEEEE
Confidence 688887777678899999998 8876543
No 385
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=25.69 E-value=2.2e+02 Score=21.62 Aligned_cols=64 Identities=22% Similarity=0.099 Sum_probs=42.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC--EEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSC--KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~--~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
.+|..+|-++...+..++.++..|. .+.. ..+..+.+. ....||+|+++..+. +-.++++.+
T Consensus 56 ~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-------------~~~~~D~v~~~~~~~--~~~~~l~~~ 120 (192)
T 1l3i_A 56 RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC-------------KIPDIDIAVVGGSGG--ELQEILRII 120 (192)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT-------------TSCCEEEEEESCCTT--CHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcc-------------cCCCCCEEEECCchH--HHHHHHHHH
Confidence 5899999999999998888877665 3333 445444221 113799999985443 345666666
Q ss_pred Hh
Q 023816 107 KV 108 (276)
Q Consensus 107 r~ 108 (276)
.+
T Consensus 121 ~~ 122 (192)
T 1l3i_A 121 KD 122 (192)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 386
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=25.68 E-value=3.6e+02 Score=26.06 Aligned_cols=29 Identities=14% Similarity=0.080 Sum_probs=25.6
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+|||+-.+-....++.+|+..||+....
T Consensus 403 ~ipVia~GGI~~g~Dv~kaLalGAdaV~i 431 (511)
T 1kbi_A 403 KLEVFVDGGVRRGTDVLKALCLGAKGVGL 431 (511)
T ss_dssp TBEEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CcEEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 68999988888999999999999988754
No 387
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=25.61 E-value=1.3e+02 Score=27.21 Aligned_cols=75 Identities=16% Similarity=0.079 Sum_probs=44.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC-EEEE-ECCHHHHHHHhcccccc---cccCCCCCceeEEEEecCCCCCCH--HHH
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSC-KVTA-VDSGRRALQFLGLDEEQ---SINGFDGLKVDLIITDYCMPGMTG--YEL 102 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~-~v~~-a~~g~~al~~l~~~~~~---~~~~~~~~~~DlIL~D~~mp~~~G--~el 102 (276)
-+|+.||-++...+..++-++..|+ .+.. ..+..+.+..+....+. ...++....||+|++|- | ..| .++
T Consensus 236 ~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dP--P-r~g~~~~~ 312 (369)
T 3bt7_A 236 DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDP--P-RSGLDSET 312 (369)
T ss_dssp SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECC--C-TTCCCHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECc--C-ccccHHHH
Confidence 3799999999999999988887776 3433 45666666544210000 00000013699999993 3 233 245
Q ss_pred HHHHH
Q 023816 103 LKKIK 107 (276)
Q Consensus 103 l~~Ir 107 (276)
++.++
T Consensus 313 ~~~l~ 317 (369)
T 3bt7_A 313 EKMVQ 317 (369)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 66665
No 388
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}
Probab=25.53 E-value=99 Score=28.95 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=22.7
Q ss_pred CCeEEEEecCC--CHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSEN--ILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~--~~~~~~~al~~Ga~d~l~K 186 (276)
.+|||.+.... ..+++.++++.||+.++.=
T Consensus 240 ~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VG 271 (330)
T 2yzr_A 240 RLPVVNFAAGGVATPADAALMMQLGSDGVFVG 271 (330)
T ss_dssp SCSSEEEECSCCCSHHHHHHHHHTTCSCEEES
T ss_pred CCCeEEEEECCCCCHHHHHHHHHcCcCEEeeH
Confidence 47886444333 5899999999999999863
No 389
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=25.49 E-value=3.1e+02 Score=23.57 Aligned_cols=26 Identities=8% Similarity=0.106 Sum_probs=21.3
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 161 VIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 161 V~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
|.+.+.-..+.+.++.++||+-++.=
T Consensus 176 I~VdGGI~~~ti~~~~~aGAd~~V~G 201 (227)
T 1tqx_A 176 IQVDGGLNIETTEISASHGANIIVAG 201 (227)
T ss_dssp EEEESSCCHHHHHHHHHHTCCEEEES
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 45677778899999999999988753
No 390
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=25.47 E-value=1.6e+02 Score=25.78 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=43.6
Q ss_pred eeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEe
Q 023816 85 VDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMS 164 (276)
Q Consensus 85 ~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls 164 (276)
+++|.+|. .......++++++++... .+|+++=-
T Consensus 164 ~~~Vyl~~-~G~~~~~~~i~~i~~~~~---------------------------------------------~~Pv~vGg 197 (234)
T 2f6u_A 164 LPIIYIEY-SGTYGNPELVAEVKKVLD---------------------------------------------KARLFYGG 197 (234)
T ss_dssp CSEEEEEC-TTSCCCHHHHHHHHHHCS---------------------------------------------SSEEEEES
T ss_pred CCEEEEeC-CCCcchHHHHHHHHHhCC---------------------------------------------CCCEEEEe
Confidence 48999998 655556889999998653 47887767
Q ss_pred cCCCHHHHHHHHhcCCCeEEeC
Q 023816 165 SENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 165 ~~~~~~~~~~al~~Ga~d~l~K 186 (276)
+=...+.+.++++ ||+..++=
T Consensus 198 GI~s~e~a~~~~~-gAd~VIVG 218 (234)
T 2f6u_A 198 GIDSREKAREMLR-YADTIIVG 218 (234)
T ss_dssp CCCSHHHHHHHHH-HSSEEEEC
T ss_pred cCCCHHHHHHHHh-CCCEEEEC
Confidence 7778889999888 99998874
No 391
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=25.38 E-value=1.9e+02 Score=25.64 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=22.6
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
++||++=.+=+..+.+.++ .||+..++=
T Consensus 202 ~~Pv~vGfGI~t~e~a~~~--~~ADgVIVG 229 (271)
T 1ujp_A 202 ALPVAVGFGVSGKATAAQA--AVADGVVVG 229 (271)
T ss_dssp CSCEEEESCCCSHHHHHHH--TTSSEEEEC
T ss_pred CCCEEEEcCCCCHHHHHHh--cCCCEEEEC
Confidence 6888777777778888885 999999884
No 392
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=25.37 E-value=1.1e+02 Score=25.32 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=33.8
Q ss_pred ccEEEEEeCC------------HHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhcccccccccCCCCCceeEEEEe
Q 023816 29 EVHVLAVDDS------------FVDRKVIERLLTISSCKVTA---VDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91 (276)
Q Consensus 29 ~~~VLIVdD~------------~~~~~~L~~~L~~~g~~v~~---a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D 91 (276)
.+-|+.+.|+ ..+...|.++|+..|+++.. +.+..++++..-... .+....|+||+-
T Consensus 17 rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a------~~~~~~DlVitt 88 (178)
T 2pjk_A 17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDA------LSIDEVDVIIST 88 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHH------HTCTTCCEEEEE
T ss_pred EEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHH------HhcCCCCEEEEC
Confidence 4556666663 23667899999999997764 444444433221110 022248999975
No 393
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=25.05 E-value=1.7e+02 Score=29.36 Aligned_cols=51 Identities=22% Similarity=0.048 Sum_probs=39.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCE---EEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCK---VTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~---v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
-+|..||=++...+..++-++..|+. +.. ..+..+.+... ...||+|++|.
T Consensus 563 ~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~------------~~~fD~Ii~DP 617 (703)
T 3v97_A 563 RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREA------------NEQFDLIFIDP 617 (703)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHC------------CCCEEEEEECC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhc------------CCCccEEEECC
Confidence 36999999999999999999888764 443 66766655543 35799999995
No 394
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=24.99 E-value=3.3e+02 Score=23.32 Aligned_cols=54 Identities=11% Similarity=0.109 Sum_probs=32.0
Q ss_pred HHhhCCC-EEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCC
Q 023816 48 LLTISSC-KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTP 111 (276)
Q Consensus 48 ~L~~~g~-~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p 111 (276)
.|+..+. -|....+.+++++.+... ....+++|=+. +-..++.+.++++++..|
T Consensus 13 ~l~~~~ii~vir~~~~~~~~~~~~al--------~~gGv~~iel~--~k~~~~~~~i~~l~~~~~ 67 (224)
T 1vhc_A 13 KLRELKIVPVIALDNADDILPLADTL--------AKNGLSVAEIT--FRSEAAADAIRLLRANRP 67 (224)
T ss_dssp HHHHHCEEEEECCSSGGGHHHHHHHH--------HHTTCCEEEEE--TTSTTHHHHHHHHHHHCT
T ss_pred HHHHCCeEEEEeCCCHHHHHHHHHHH--------HHcCCCEEEEe--ccCchHHHHHHHHHHhCc
Confidence 4444453 344456666666555222 22346666555 445688999999988665
No 395
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=24.89 E-value=3.3e+02 Score=25.85 Aligned_cols=12 Identities=42% Similarity=0.448 Sum_probs=9.6
Q ss_pred CCCceeEEEEec
Q 023816 81 DGLKVDLIITDY 92 (276)
Q Consensus 81 ~~~~~DlIL~D~ 92 (276)
....+|+||+|.
T Consensus 176 ~~~~~DvvIIDT 187 (433)
T 3kl4_A 176 VKNKMDIIIVDT 187 (433)
T ss_dssp TTTTCSEEEEEE
T ss_pred HhcCCCEEEEEC
Confidence 345799999996
No 396
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=24.72 E-value=1.9e+02 Score=24.77 Aligned_cols=54 Identities=15% Similarity=0.070 Sum_probs=29.4
Q ss_pred HHHHHHHhhCCCEEEE---E----CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhh
Q 023816 43 KVIERLLTISSCKVTA---V----DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVT 109 (276)
Q Consensus 43 ~~L~~~L~~~g~~v~~---a----~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~ 109 (276)
+.+++.|+..|.++.. . .+....++.+ ...++|+|++... +.+...+++.+++.
T Consensus 177 ~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~-----------~~~~~dav~~~~~--~~~a~~~~~~~~~~ 237 (386)
T 3sg0_A 177 KVLAAAAPKLGFELTTHEVYARSDASVTGQVLKI-----------IATKPDAVFIASA--GTPAVLPQKALRER 237 (386)
T ss_dssp HHHHHHHHHHTCEECCCEEECTTCSCCHHHHHHH-----------HHTCCSEEEEECC--SGGGHHHHHHHHHT
T ss_pred HHHHHHHHHcCCEEEEEEeeCCCCCcHHHHHHHH-----------HhcCCCEEEEecC--cchHHHHHHHHHHc
Confidence 3445556666665531 1 2344455555 3346787776432 34466677777764
No 397
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=24.71 E-value=3.6e+02 Score=23.74 Aligned_cols=66 Identities=9% Similarity=0.026 Sum_probs=38.8
Q ss_pred EEEEE-eCCHH---HHHHHHHHHhhCCCEEEEE-------CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCH
Q 023816 31 HVLAV-DDSFV---DRKVIERLLTISSCKVTAV-------DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG 99 (276)
Q Consensus 31 ~VLIV-dD~~~---~~~~L~~~L~~~g~~v~~a-------~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G 99 (276)
+|.++ +|+.. ..+.+++.++..|.++... .+....++.+ ...++|+|++.-.-+ .+.
T Consensus 166 ~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i-----------~~~~~d~v~~~~~~~-~~~ 233 (419)
T 3h5l_A 166 KIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKL-----------RADPPAVIVVTHFYP-QDQ 233 (419)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHH-----------HHSCCSEEEECCCCH-HHH
T ss_pred EEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHH-----------HhcCCCEEEEccccC-chH
Confidence 55544 44432 4455667777889887652 3556677777 455789998752111 124
Q ss_pred HHHHHHHHh
Q 023816 100 YELLKKIKV 108 (276)
Q Consensus 100 ~ell~~Ir~ 108 (276)
..+++.+++
T Consensus 234 ~~~~~~~~~ 242 (419)
T 3h5l_A 234 ALFMNQFMT 242 (419)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 456666654
No 398
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=24.63 E-value=1.2e+02 Score=24.82 Aligned_cols=65 Identities=14% Similarity=0.089 Sum_probs=40.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCE--EEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 31 HVLAVDDSFVDRKVIERLLTISSCK--VTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 31 ~VLIVdD~~~~~~~L~~~L~~~g~~--v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
+|..||-++...+..++.+...|.. +.. ..+.. .+ .+....||+|++...+...+-.+++++++
T Consensus 71 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~----~~---------~~~~~~fD~v~~~~~l~~~~~~~~l~~~~ 137 (257)
T 3f4k_A 71 QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMD----NL---------PFQNEELDLIWSEGAIYNIGFERGMNEWS 137 (257)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT----SC---------SSCTTCEEEEEEESCSCCCCHHHHHHHHH
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChh----hC---------CCCCCCEEEEEecChHhhcCHHHHHHHHH
Confidence 6777777777777777666665531 222 22211 01 11345799999998777777667777776
Q ss_pred h
Q 023816 108 V 108 (276)
Q Consensus 108 ~ 108 (276)
+
T Consensus 138 ~ 138 (257)
T 3f4k_A 138 K 138 (257)
T ss_dssp T
T ss_pred H
Confidence 5
No 399
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=24.58 E-value=92 Score=29.25 Aligned_cols=67 Identities=21% Similarity=0.375 Sum_probs=50.4
Q ss_pred CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccC
Q 023816 60 DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCF 139 (276)
Q Consensus 60 ~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (276)
.|.+||++.+.+|.+ ..-|+|..= |++.-+++++++|...|
T Consensus 229 aN~~EAlre~~~Di~--------EGAD~vMVK---Pal~YLDIi~~vk~~~p---------------------------- 269 (330)
T 1pv8_A 229 GARGLALRAVDRDVR--------EGADMLMVK---PGMPYLDIVREVKDKHP---------------------------- 269 (330)
T ss_dssp TCHHHHHHHHHHHHH--------TTCSBEEEE---SCGGGHHHHHHHHHHST----------------------------
T ss_pred CCHHHHHHHHHhhHH--------hCCceEEEe---cCccHHHHHHHHHHhcC----------------------------
Confidence 377889888877754 246777765 78888999999999887
Q ss_pred CcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCe
Q 023816 140 PFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAED 182 (276)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d 182 (276)
.+|+.+.--+..-..+..|-+.|..|
T Consensus 270 -----------------~~P~aaYqVSGEYAMikaAa~~GwiD 295 (330)
T 1pv8_A 270 -----------------DLPLAVYHVSGEFAMLWHGAQAGAFD 295 (330)
T ss_dssp -----------------TSCEEEEECHHHHHHHHHHHHTTSSC
T ss_pred -----------------CCCeEEEEcCcHHHHHHHHHHcCCcc
Confidence 78988877666666677777777654
No 400
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=24.53 E-value=1.9e+02 Score=21.67 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=32.2
Q ss_pred ccEEEEEe-----CCHHHHHHHHHHHhhCCCE--EEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCC
Q 023816 29 EVHVLAVD-----DSFVDRKVIERLLTISSCK--VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (276)
Q Consensus 29 ~~~VLIVd-----D~~~~~~~L~~~L~~~g~~--v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp 95 (276)
.++||+|= -. ...+.+++.++..|++ +.++. ..++-+.+ ..+|+||+-.++.
T Consensus 4 ~mkIlvvC~~G~~TS-ll~~kl~~~~~~~gi~~~i~~~~-~~~~~~~~-------------~~~D~Ii~t~~l~ 62 (109)
T 2l2q_A 4 SMNILLVCGAGMSTS-MLVQRIEKYAKSKNINATIEAIA-ETRLSEVV-------------DRFDVVLLAPQSR 62 (109)
T ss_dssp CEEEEEESSSSCSSC-HHHHHHHHHHHHHTCSEEEEEEC-STTHHHHT-------------TTCSEEEECSCCS
T ss_pred ceEEEEECCChHhHH-HHHHHHHHHHHHCCCCeEEEEec-HHHHHhhc-------------CCCCEEEECCccH
Confidence 36777773 34 6778899999988864 44333 22332322 2478998876654
No 401
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=24.45 E-value=4.2e+02 Score=24.37 Aligned_cols=74 Identities=11% Similarity=0.102 Sum_probs=58.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
.+.+.|-+.-.++.....+...|...-|.+..+.+.++.++++.. ....+|++++-.- +.+-..+...+
T Consensus 7 ~~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~---------~~e~iDcLvle~~--~~~~~~~~~~L 75 (289)
T 1r8j_A 7 LSQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQT---------HRDQIDCLILVAA--NPSFRAVVQQL 75 (289)
T ss_dssp CCCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHH---------STTSCSEEEEETT--STTHHHHHHHH
T ss_pred ccceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHh---------ccccCCEEEEEeC--CCccHHHHHHH
Confidence 347788888899999999999998888999999999999998843 4567999998751 23456677888
Q ss_pred HhhCC
Q 023816 107 KVTTP 111 (276)
Q Consensus 107 r~~~p 111 (276)
.+..-
T Consensus 76 ~~~g~ 80 (289)
T 1r8j_A 76 CFEGV 80 (289)
T ss_dssp HHTTC
T ss_pred HHcCc
Confidence 76544
No 402
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=24.43 E-value=98 Score=28.08 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=25.2
Q ss_pred CCHHHHHHHHhcCCCeEEeCCCC--HHHHHHHHHHHHH
Q 023816 167 NILARIDRCLEDGAEDFIVKPVK--LSDVKRIKDYLTR 202 (276)
Q Consensus 167 ~~~~~~~~al~~Ga~d~l~KPv~--~~~L~~~~~~l~~ 202 (276)
...+....|+++|..=|+.||+. .++..++++...+
T Consensus 76 ~H~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~ 113 (387)
T 3moi_A 76 FHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVER 113 (387)
T ss_dssp GHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCceeeeCCccCCHHHHHHHHHHHHH
Confidence 34556778999999999999964 5566555554443
No 403
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=24.30 E-value=50 Score=26.86 Aligned_cols=31 Identities=13% Similarity=0.081 Sum_probs=25.6
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCH
Q 023816 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSG 62 (276)
Q Consensus 32 VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g 62 (276)
|+|+|-...+...+.+.|++.|+++..+...
T Consensus 3 i~iid~~~~~~~~~~~~l~~~G~~~~~~~~~ 33 (189)
T 1wl8_A 3 IVIMDNGGQYVHRIWRTLRYLGVETKIIPNT 33 (189)
T ss_dssp EEEEECSCTTHHHHHHHHHHTTCEEEEEETT
T ss_pred EEEEECCCchHHHHHHHHHHCCCeEEEEECC
Confidence 8999977777788899999999988876643
No 404
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=24.27 E-value=3.9e+02 Score=24.77 Aligned_cols=30 Identities=13% Similarity=0.089 Sum_probs=25.6
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
.+|||+-.+-....++.+|+..||+....=
T Consensus 278 ~ipvia~GGI~~g~Dv~KaLalGAdaV~ig 307 (365)
T 3sr7_A 278 KVEILASGGIRHPLDIIKALVLGAKAVGLS 307 (365)
T ss_dssp TSEEEECSSCCSHHHHHHHHHHTCSEEEES
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 688888777788999999999999987653
No 405
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=24.27 E-value=1.9e+02 Score=27.24 Aligned_cols=69 Identities=23% Similarity=0.263 Sum_probs=0.0
Q ss_pred CCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC-CHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhcccc
Q 023816 60 DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM-TGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFC 138 (276)
Q Consensus 60 ~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~-~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (276)
.+..+.+..+ ....+|.|.++...... .-++.+++||+..|
T Consensus 236 ~~~~~~a~~l-----------~~aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p--------------------------- 277 (494)
T 1vrd_A 236 PETMERVEKL-----------VKAGVDVIVIDTAHGHSRRVIETLEMIKADYP--------------------------- 277 (494)
T ss_dssp TTHHHHHHHH-----------HHTTCSEEEECCSCCSSHHHHHHHHHHHHHCT---------------------------
T ss_pred HhHHHHHHHH-----------HHhCCCEEEEEecCCchHHHHHHHHHHHHHCC---------------------------
Q ss_pred CCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 139 FPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++||++ -.-...+....+.++|++...+
T Consensus 278 ------------------~~pvi~-g~~~t~e~a~~l~~~G~d~I~v 305 (494)
T 1vrd_A 278 ------------------DLPVVA-GNVATPEGTEALIKAGADAVKV 305 (494)
T ss_dssp ------------------TSCEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred ------------------CceEEe-CCcCCHHHHHHHHHcCCCEEEE
No 406
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=23.98 E-value=65 Score=27.41 Aligned_cols=53 Identities=8% Similarity=0.010 Sum_probs=34.5
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecC
Q 023816 30 VHVLAVDDSFV--------DRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC 93 (276)
Q Consensus 30 ~~VLIVdD~~~--------~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~ 93 (276)
.+|+|+.+... ..+.+.+.|++.|+++..++.....+..+ ....+|+|+.-.+
T Consensus 3 ~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~-----------~~~~~d~v~~~~~ 63 (306)
T 1iow_A 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQL-----------KSMGFQKVFIALH 63 (306)
T ss_dssp CEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGT-----------TTTTEEEEEECCC
T ss_pred cEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHh-----------hccCCCEEEEcCC
Confidence 57888876541 33567778889999999887542211222 3457999886653
No 407
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=23.92 E-value=77 Score=27.96 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=36.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhC-------C-C--EEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCC
Q 023816 30 VHVLAVDDSFVDRKVIERLLTIS-------S-C--KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT 98 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~-------g-~--~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~ 98 (276)
.+|..||-++.....+++.++.. + . ++.. ..+..+.++.+ .. .||+|++|-.-|...
T Consensus 111 ~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~-----------~~-~fDvV~lDP~y~~~~ 178 (258)
T 2oyr_A 111 CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-----------TP-RPQVVYLDPMFPHKQ 178 (258)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC-----------SS-CCSEEEECCCCCCCC
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC-----------cc-cCCEEEEcCCCCCcc
Confidence 36999999998877777766432 1 1 2332 45555444333 22 699999998666544
Q ss_pred HH
Q 023816 99 GY 100 (276)
Q Consensus 99 G~ 100 (276)
+-
T Consensus 179 ~s 180 (258)
T 2oyr_A 179 KS 180 (258)
T ss_dssp C-
T ss_pred cc
Confidence 33
No 408
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=23.81 E-value=69 Score=29.88 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=29.8
Q ss_pred CeEEEEecC--CCHHHHHHHHhcC------CCeEEeCCCC--HHHHHHHHHHHHH
Q 023816 158 IPVVIMSSE--NILARIDRCLEDG------AEDFIVKPVK--LSDVKRIKDYLTR 202 (276)
Q Consensus 158 ipiV~ls~~--~~~~~~~~al~~G------a~d~l~KPv~--~~~L~~~~~~l~~ 202 (276)
+-+|+++.. ...+....|+++| ..=|+.||+. .++..++++...+
T Consensus 90 vD~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~ 144 (438)
T 3btv_A 90 IDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAE 144 (438)
T ss_dssp CSEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHT
T ss_pred CCEEEEeCCcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHH
Confidence 445544433 3456677899999 7889999974 6666666665543
No 409
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=23.74 E-value=1.5e+02 Score=23.76 Aligned_cols=54 Identities=17% Similarity=0.114 Sum_probs=39.4
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 25 SDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 25 ~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
.+..+.+|.++..... ...+.+.+ .+.++..+.+..++++.+ ..++.|.++.|.
T Consensus 126 ~dL~g~~i~v~~g~~~-~~~l~~~~--~~~~~~~~~~~~~~~~~L-----------~~GrvDa~i~~~ 179 (249)
T 4f3p_A 126 DDLNGKVIAAKTGTAT-IDWIKAHL--KPKEIRQFPNIDQAYLAL-----------EAGRVDAAMHDT 179 (249)
T ss_dssp GGGTTSEEEEETTSHH-HHHHHHHC--CCSEEEEESSHHHHHHHH-----------HTTSSSEEEEEH
T ss_pred HHhCCCEEEEeCCChH-HHHHHhcC--CCceEEEcCCHHHHHHHH-----------HcCCeeEEEeCc
Confidence 4445678888776653 33343332 357888999999999999 678899999985
No 410
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=23.69 E-value=3.3e+02 Score=22.99 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=17.7
Q ss_pred ceeEEEEecCCCCCCHHHHHHHHHhhCC
Q 023816 84 KVDLIITDYCMPGMTGYELLKKIKVTTP 111 (276)
Q Consensus 84 ~~DlIL~D~~mp~~~G~ell~~Ir~~~p 111 (276)
..++|=+. +-..++.+.++++++..|
T Consensus 41 Gv~~iel~--~k~~~~~~~i~~l~~~~~ 66 (214)
T 1wbh_A 41 GVRVLNVT--LRTECAVDAIRAIAKEVP 66 (214)
T ss_dssp TCCEEEEE--SCSTTHHHHHHHHHHHCT
T ss_pred CCCEEEEe--CCChhHHHHHHHHHHHCc
Confidence 45655555 345678899998887665
No 411
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=23.38 E-value=3.1e+02 Score=25.21 Aligned_cols=43 Identities=12% Similarity=0.256 Sum_probs=30.3
Q ss_pred CeEEEEecCCCHHHHHHHHhcCCCeEEeCC-CCHHHHHHHHHHH
Q 023816 158 IPVVIMSSENILARIDRCLEDGAEDFIVKP-VKLSDVKRIKDYL 200 (276)
Q Consensus 158 ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP-v~~~~L~~~~~~l 200 (276)
.++++=+...+..++..+++.|++..+..= -+.+++++++..+
T Consensus 96 ~~~~VRv~~~~~~di~~~LdaGa~gImlP~V~saee~~~~~~~~ 139 (339)
T 1izc_A 96 SLVIVRVPKHDEVSLSTALDAGAAGIVIPHVETVEEVREFVKEM 139 (339)
T ss_dssp SEEEEECCTTCHHHHHHHHHHTCSEEEETTCCCHHHHHHHHHHH
T ss_pred CeEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHh
Confidence 556666666677899999999998865533 3567777666554
No 412
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=23.35 E-value=1.6e+02 Score=24.04 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=32.4
Q ss_pred ccEEEEEeCC-----HHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhcccccccccCCCCCceeEEEEe
Q 023816 29 EVHVLAVDDS-----FVDRKVIERLLTISSCKVTA---VDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91 (276)
Q Consensus 29 ~~~VLIVdD~-----~~~~~~L~~~L~~~g~~v~~---a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D 91 (276)
.+-|+.+.|+ ..+...|.+.|+..|+++.. +.+..+++...-.... +....|+||+-
T Consensus 12 ~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~------~~~~~DlVitt 76 (172)
T 1mkz_A 12 RIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWI------ASDDVQVVLIT 76 (172)
T ss_dssp EEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHH------HSSSCCEEEEE
T ss_pred EEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHH------hcCCCCEEEeC
Confidence 3445555554 24677899999999987653 5554443332211100 11248999965
No 413
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=23.18 E-value=3.4e+02 Score=22.87 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=24.3
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+||+.-.+=...+....+.+.|++.++.
T Consensus 170 ~~~ii~ggGI~~~~~~~~~~~~gaDgvlV 198 (219)
T 2h6r_A 170 DVKVLCGAGISKGEDVKAALDLGAEGVLL 198 (219)
T ss_dssp TCEEEECSSCCSHHHHHHHHTTTCCCEEE
T ss_pred CCeEEEEeCcCcHHHHHHHhhCCCCEEEE
Confidence 57888777777788888899999999986
No 414
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=23.04 E-value=4.2e+02 Score=24.14 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=21.8
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+||++ -.-...++...+++.||+...+
T Consensus 211 ~~pvi~-ggi~t~e~a~~~~~~Gad~i~v 238 (393)
T 2qr6_A 211 DVPVIA-GGVNDYTTALHMMRTGAVGIIV 238 (393)
T ss_dssp SSCEEE-ECCCSHHHHHHHHTTTCSEEEE
T ss_pred CCCEEE-CCcCCHHHHHHHHHcCCCEEEE
Confidence 578877 3445678889999999998876
No 415
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=22.98 E-value=1.6e+02 Score=24.85 Aligned_cols=53 Identities=11% Similarity=0.085 Sum_probs=29.8
Q ss_pred HHHHHHHHhhCCCEEEEECCH------HHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 42 RKVIERLLTISSCKVTAVDSG------RRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 42 ~~~L~~~L~~~g~~v~~a~~g------~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
.+.+++.+++.||.+..+... .+.++.+ ...++|-||+--.-. + -+.+++++.
T Consensus 46 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l-----------~~~~vdgiIi~~~~~--~-~~~~~~l~~ 104 (305)
T 3huu_A 46 LNGINQACNVRGYSTRMTVSENSGDLYHEVKTMI-----------QSKSVDGFILLYSLK--D-DPIEHLLNE 104 (305)
T ss_dssp HHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHH-----------HTTCCSEEEESSCBT--T-CHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHH-----------HhCCCCEEEEeCCcC--C-cHHHHHHHH
Confidence 344666777889998885532 2234444 456788766532111 1 256666654
No 416
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=22.93 E-value=4e+02 Score=23.68 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=25.2
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+|||+..+-....++.+++..||+....
T Consensus 256 ~ipvia~GGI~~~~d~~kal~~GAd~V~i 284 (332)
T 1vcf_A 256 HLPLVASGGVYTGTDGAKALALGADLLAV 284 (332)
T ss_dssp SSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCeEEEECCCCCHHHHHHHHHhCCChHhh
Confidence 58999998889999999999999987643
No 417
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=22.90 E-value=2.4e+02 Score=26.11 Aligned_cols=89 Identities=20% Similarity=0.156 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhhCCCEEE--EECCHHHHHHHhcccccccccCCCCCceeEEEEecCCC-----CCCHHHHHHHHHhhCC
Q 023816 39 FVDRKVIERLLTISSCKVT--AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-----GMTGYELLKKIKVTTP 111 (276)
Q Consensus 39 ~~~~~~L~~~L~~~g~~v~--~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp-----~~~G~ell~~Ir~~~p 111 (276)
..+.+.++++-+..+..+. .+.+.++|...+ +...|.|.+.-+-. +...+++++++++..
T Consensus 211 ~~~~~~i~~i~~~~~~Pv~vkgv~t~e~a~~a~------------~aGad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~- 277 (380)
T 1p4c_A 211 SFNWEALRWLRDLWPHKLLVKGLLSAEDADRCI------------AEGADGVILSNHGGRQLDCAISPMEVLAQSVAKT- 277 (380)
T ss_dssp TCCHHHHHHHHHHCCSEEEEEEECCHHHHHHHH------------HTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHH-
T ss_pred cccHHHHHHHHHhcCCCEEEEecCcHHHHHHHH------------HcCCCEEEEcCCCCCcCCCCcCHHHHHHHHHHHc-
Confidence 3445677777666676655 377888777665 23567776632110 112245566665422
Q ss_pred CCcccchheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 112 FNFLYSTIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
+.|||+-.+-....++.+++..||+....
T Consensus 278 ---------------------------------------------~~pVia~GGI~~~~dv~kal~~GAdaV~i 306 (380)
T 1p4c_A 278 ---------------------------------------------GKPVLIDSGFRRGSDIVKALALGAEAVLL 306 (380)
T ss_dssp ---------------------------------------------CSCEEECSSCCSHHHHHHHHHTTCSCEEE
T ss_pred ---------------------------------------------CCeEEEECCCCCHHHHHHHHHhCCcHhhe
Confidence 34777766667888999999999988755
No 418
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=22.90 E-value=1.7e+02 Score=24.96 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=30.8
Q ss_pred ccCCCCCeEEEEecCCCHHHHHHHHhc--CCCeEEeCCCCHHHHHHHHHHHH
Q 023816 152 SSALREIPVVIMSSENILARIDRCLED--GAEDFIVKPVKLSDVKRIKDYLT 201 (276)
Q Consensus 152 ~~~~~~ipiV~ls~~~~~~~~~~al~~--Ga~d~l~KPv~~~~L~~~~~~l~ 201 (276)
+.....+|||+.-. ....+.++. |-.+++..| +.+++.+.+..+.
T Consensus 260 EAma~G~PvI~s~~----~~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~ 306 (342)
T 2iuy_A 260 EAAVSGTPVVGTGN----GCLAEIVPSVGEVVGYGTDF-APDEARRTLAGLP 306 (342)
T ss_dssp HHHHTTCCEEECCT----TTHHHHGGGGEEECCSSSCC-CHHHHHHHHHTSC
T ss_pred HHHhcCCCEEEcCC----CChHHHhcccCCCceEEcCC-CHHHHHHHHHHHH
Confidence 33444788875432 235566777 888999999 9999977666543
No 419
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=22.87 E-value=3.8e+02 Score=23.37 Aligned_cols=45 Identities=20% Similarity=0.346 Sum_probs=30.8
Q ss_pred ccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 152 ~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
+.....+|||+.-. ....+.++.|-.+++.. +.+++.+.+..+..
T Consensus 334 EAma~G~PvI~~~~----~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~ 378 (416)
T 2x6q_A 334 EAMWKGKPVIGRAV----GGIKFQIVDGETGFLVR--DANEAVEVVLYLLK 378 (416)
T ss_dssp HHHHTTCCEEEESC----HHHHHHCCBTTTEEEES--SHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEccC----CCChhheecCCCeEEEC--CHHHHHHHHHHHHh
Confidence 34445788876421 34556777888999997 88888777666654
No 420
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=22.74 E-value=1.4e+02 Score=26.13 Aligned_cols=28 Identities=7% Similarity=-0.101 Sum_probs=24.4
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++|+|..++-...+++.++.+ |++.+++
T Consensus 208 ~~~vIAegGI~s~~dv~~l~~-Ga~gvlV 235 (254)
T 1vc4_A 208 GGVLVAESGYSRKEELKALEG-LFDAVLI 235 (254)
T ss_dssp CSEEEEESCCCSHHHHHTTTT-TCSEEEE
T ss_pred CCeEEEEcCCCCHHHHHHHHc-CCCEEEE
Confidence 478888887788999999999 9999986
No 421
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=22.68 E-value=1.3e+02 Score=23.81 Aligned_cols=53 Identities=13% Similarity=0.111 Sum_probs=38.4
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 25 SDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 25 ~~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
.+..+.+|-++.... ....+.+ ..+.++..+.+..++++.+ ..++.|.++.|.
T Consensus 114 ~dL~g~~i~v~~g~~-~~~~l~~---~~~~~~~~~~~~~~~~~~L-----------~~g~vDa~~~~~ 166 (242)
T 3del_B 114 PLTQYRSVAVQTGTY-QEAYLQS---LSEVHIRSFDSTLEVLMEV-----------MHGKSPVAVLEP 166 (242)
T ss_dssp CGGGSSCEEEETTSH-HHHHHHH---STTCCEEEESSHHHHHHHH-----------HTTSSSEEEECH
T ss_pred HHhCCCEEEEEcCcH-HHHHHHh---CCCceEEEECCHHHHHHHH-----------HcCCCCEEEecH
Confidence 444566787776554 3333433 3467888899999999999 778899999885
No 422
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=22.40 E-value=3.8e+02 Score=23.11 Aligned_cols=44 Identities=16% Similarity=0.111 Sum_probs=32.1
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeC-CCCHHHHHHHHHHH
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVK-PVKLSDVKRIKDYL 200 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K-Pv~~~~L~~~~~~l 200 (276)
+.++++=+...+...+..+++.|++..+.. =-+.++++++++.+
T Consensus 69 ~~~~~VRv~~~~~~~i~~~l~~g~~gI~~P~V~s~~ev~~~~~~~ 113 (256)
T 1dxe_A 69 ASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAELAVAST 113 (256)
T ss_dssp SSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHTT
T ss_pred CCcEEEECCCCCHHHHHHHHhcCCceeeecCcCCHHHHHHHHHHh
Confidence 467777777788888999999999886553 33667776665544
No 423
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=22.33 E-value=66 Score=28.54 Aligned_cols=59 Identities=19% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHhcccccccccCCCCCceeEEEEecCC--CCCCHHHHHHHHHhhCCCCcccchheehhhhhhhhhhhhhccccCC
Q 023816 63 RRALQFLGLDEEQSINGFDGLKVDLIITDYCM--PGMTGYELLKKIKVTTPFNFLYSTIIVFLNLQNLFLFILSICFCFP 140 (276)
Q Consensus 63 ~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~m--p~~~G~ell~~Ir~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (276)
.++++.+ .+...|.|++--.. -..+-.+++++||+ .
T Consensus 26 ~~~l~~~-----------~~~GtDaI~vGgs~gvt~~~~~~~v~~ik~--~----------------------------- 63 (235)
T 3w01_A 26 DDDLDAI-----------CMSQTDAIMIGGTDDVTEDNVIHLMSKIRR--Y----------------------------- 63 (235)
T ss_dssp HHHHHHH-----------HTSSCSEEEECCSSCCCHHHHHHHHHHHTT--S-----------------------------
T ss_pred HHHHHHH-----------HHcCCCEEEECCcCCcCHHHHHHHHHHhcC--c-----------------------------
Q ss_pred cCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEe
Q 023816 141 FFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 141 ~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~ 185 (276)
++|+|++++.. +.+..|+|.|+.
T Consensus 64 ----------------~~Piil~p~~~------~~~~~gaD~il~ 86 (235)
T 3w01_A 64 ----------------PLPLVLEISNI------ESVMPGFDFYFV 86 (235)
T ss_dssp ----------------CSCEEEECCCS------TTCCTTCSEEEE
T ss_pred ----------------CCCEEEecCCH------HHhhcCCCEEEE
No 424
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=22.31 E-value=1.3e+02 Score=23.25 Aligned_cols=68 Identities=10% Similarity=0.044 Sum_probs=41.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHH
Q 023816 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (276)
Q Consensus 27 ~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~I 106 (276)
|.++++.+|-| ....- -++..|+++..+.+.+++.+.+..-. ....+.+|+++-++-. .--+.+.++
T Consensus 1 m~~mkiaVIgD-~dtv~----GFrLaGi~~~~v~~~ee~~~~~~~l~-------~~~digIIlIte~~a~-~i~~~i~~~ 67 (109)
T 2d00_A 1 MVPVRMAVIAD-PETAQ----GFRLAGLEGYGASSAEEAQSLLETLV-------ERGGYALVAVDEALLP-DPERAVERL 67 (109)
T ss_dssp CCCCCEEEEEC-HHHHH----HHHHTTSEEEECSSHHHHHHHHHHHH-------HHCCCSEEEEETTTCS-CHHHHHHHH
T ss_pred CCccEEEEEeC-HHHHH----HHHHcCCeEEEeCCHHHHHHHHHHHh-------hCCCeEEEEEeHHHHH-hhHHHHHHH
Confidence 45678999988 33222 34457888888888887766553211 2236889999876544 222344444
Q ss_pred H
Q 023816 107 K 107 (276)
Q Consensus 107 r 107 (276)
+
T Consensus 68 ~ 68 (109)
T 2d00_A 68 M 68 (109)
T ss_dssp T
T ss_pred H
Confidence 3
No 425
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=22.07 E-value=3.8e+02 Score=23.01 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=26.7
Q ss_pred ccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 023816 152 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 201 (276)
Q Consensus 152 ~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~ 201 (276)
+.....+|+|+......... ..+.| ..++.. .+.++|.+.+..+.
T Consensus 288 EA~a~G~PvI~~~~~~~~~~---~~~~g-~g~lv~-~d~~~la~~i~~ll 332 (376)
T 1v4v_A 288 EGAALGVPVVVLRNVTERPE---GLKAG-ILKLAG-TDPEGVYRVVKGLL 332 (376)
T ss_dssp HHHHTTCCEEECSSSCSCHH---HHHHT-SEEECC-SCHHHHHHHHHHHH
T ss_pred HHHHcCCCEEeccCCCcchh---hhcCC-ceEECC-CCHHHHHHHHHHHH
Confidence 44445899987643222222 24556 467774 48888877666654
No 426
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=22.04 E-value=2.4e+02 Score=25.76 Aligned_cols=43 Identities=19% Similarity=0.174 Sum_probs=29.3
Q ss_pred CCeEEEEecCCCH-------------HHHHHHHhcCCCeEEeCC------CCHHHHHHHHHH
Q 023816 157 EIPVVIMSSENIL-------------ARIDRCLEDGAEDFIVKP------VKLSDVKRIKDY 199 (276)
Q Consensus 157 ~ipiV~ls~~~~~-------------~~~~~al~~Ga~d~l~KP------v~~~~L~~~~~~ 199 (276)
.+||.+|.-.... +++..+.++||+++..=- ++.+.+++++..
T Consensus 89 ~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~ 150 (287)
T 3iwp_A 89 QIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAI 150 (287)
T ss_dssp CSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTSCBCHHHHHHHHHH
T ss_pred CCCeEEEEecCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeeCCCCCcCHHHHHHHHHH
Confidence 4788777665544 688889999999997763 344455555443
No 427
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=21.77 E-value=44 Score=30.03 Aligned_cols=58 Identities=7% Similarity=0.059 Sum_probs=34.1
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHhh--CCCEEEEEC-CHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 24 PSDTEEVHVLAVDDSFVDRKVIERLLTI--SSCKVTAVD-SGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 24 ~~~~~~~~VLIVdD~~~~~~~L~~~L~~--~g~~v~~a~-~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
+.....++||++..+.-+....+++-.. .|++|.... +..+.++.+ ++..+|+|++=-
T Consensus 25 ~~~~~~m~ill~~~~~~~~~l~q~l~~~l~~~h~V~~~~~~~~~~~~~L-----------~~~~pDliv~~~ 85 (260)
T 1zgh_A 25 YKKAGLMNIIIATTKSWNIKNAQKFKKENESKYNTTIITNKDELTFEKV-----------KLINPEYILFPH 85 (260)
T ss_dssp -----CEEEEEECCSHHHHHHHHHHHHHTTTTEEEEEECSGGGCCHHHH-----------HHHCCSEEEESS
T ss_pred ccccCceEEEEECChHHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHH-----------HhcCCCEEEEec
Confidence 4555678999998877766665554221 467776654 333345555 455789888643
No 428
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=21.73 E-value=2.6e+02 Score=21.08 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=24.0
Q ss_pred CCeEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 023816 157 EIPVVIMSSENILARIDRCLEDGAEDFIVKP 187 (276)
Q Consensus 157 ~ipiV~ls~~~~~~~~~~al~~Ga~d~l~KP 187 (276)
.++++++|+.........+-..|..+|+...
T Consensus 52 g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~~ 82 (162)
T 2p9j_A 52 GITLAVISGRDSAPLITRLKELGVEEIYTGS 82 (162)
T ss_dssp TCEEEEEESCCCHHHHHHHHHTTCCEEEECC
T ss_pred CCEEEEEeCCCcHHHHHHHHHcCCHhhccCC
Confidence 5799999998877666666678998888543
No 429
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=21.60 E-value=2.7e+02 Score=22.82 Aligned_cols=57 Identities=14% Similarity=0.106 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhCCCEEEEECC---HH---HHHHHhcccccccccCCCCCceeEEEEecCCCC-C-CHHHHHHHHHh
Q 023816 41 DRKVIERLLTISSCKVTAVDS---GR---RALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-M-TGYELLKKIKV 108 (276)
Q Consensus 41 ~~~~L~~~L~~~g~~v~~a~~---g~---~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~-~-~G~ell~~Ir~ 108 (276)
..+.+++.+++.||++..... .. +.++.+ ...++|-||+--.-.. . ...+.+++++.
T Consensus 33 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l-----------~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~ 97 (298)
T 3tb6_A 33 IIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENL-----------LSQHIDGLIVEPTKSALQTPNIGYYLNLEK 97 (298)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHH-----------HHTCCSEEEECCSSTTSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHH-----------HHCCCCEEEEecccccccCCcHHHHHHHHh
Confidence 455577778889998887542 22 233433 3456787776432211 1 23456666664
No 430
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=21.60 E-value=1.8e+02 Score=23.61 Aligned_cols=46 Identities=24% Similarity=0.386 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhcccccccccCCCCCceeEEEEe
Q 023816 40 VDRKVIERLLTISSCKVTA---VDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91 (276)
Q Consensus 40 ~~~~~L~~~L~~~g~~v~~---a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D 91 (276)
.+...|.+.|+..|+++.. +.+..++++..-... .+....|+||+-
T Consensus 31 sn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~------~~~~~~DlVitt 79 (169)
T 1y5e_A 31 KSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAG------YHKEDVDVVLTN 79 (169)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHH------HTCTTCSEEEEE
T ss_pred ChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHH------HhcCCCCEEEEc
Confidence 5778899999999987654 555444433221110 022368999975
No 431
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=21.59 E-value=4.2e+02 Score=23.32 Aligned_cols=85 Identities=13% Similarity=0.058 Sum_probs=55.2
Q ss_pred HHHHHHHhhCCCEEEE-ECCHHHHHHHhcccccccccCCCCC-ceeEEEEecCCCCCCH----HHHHHHHHhhCCCCccc
Q 023816 43 KVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGL-KVDLIITDYCMPGMTG----YELLKKIKVTTPFNFLY 116 (276)
Q Consensus 43 ~~L~~~L~~~g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~-~~DlIL~D~~mp~~~G----~ell~~Ir~~~p~~~~~ 116 (276)
+.+.+..+.+|..+.. +.|.+|+...+ .. ++|+|-+... +..+ ++...++...-|
T Consensus 140 ~~l~~~a~~lGl~~lvEv~~~eE~~~A~------------~l~g~~iIGinnr--~l~t~~~d~~~~~~l~~~ip----- 200 (251)
T 1i4n_A 140 KEIYEAAEELGMDSLVEVHSREDLEKVF------------SVIRPKIIGINTR--DLDTFEIKKNVLWELLPLVP----- 200 (251)
T ss_dssp HHHHHHHHTTTCEEEEEECSHHHHHHHH------------TTCCCSEEEEECB--CTTTCCBCTTHHHHHGGGSC-----
T ss_pred HHHHHHHHHcCCeEEEEeCCHHHHHHHH------------hcCCCCEEEEeCc--ccccCCCCHHHHHHHHHhCC-----
Confidence 3344444567988776 78888876655 44 6788765542 2221 344555543322
Q ss_pred chheehhhhhhhhhhhhhccccCCcCCCCCcccccccCCCCCeEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 023816 117 STIIVFLNLQNLFLFILSICFCFPFFFPSNNLEQDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 186 (276)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiV~ls~~~~~~~~~~al~~Ga~d~l~K 186 (276)
.++++|.-++-...+++.++.+. ++.+|+=
T Consensus 201 ---------------------------------------~~~~vIaEsGI~t~edv~~~~~~-a~avLVG 230 (251)
T 1i4n_A 201 ---------------------------------------DDTVVVAESGIKDPRELKDLRGK-VNAVLVG 230 (251)
T ss_dssp ---------------------------------------TTSEEEEESCCCCGGGHHHHTTT-CSEEEEC
T ss_pred ---------------------------------------CCCEEEEeCCCCCHHHHHHHHHh-CCEEEEc
Confidence 14677777777789999999999 9999873
No 432
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=21.57 E-value=2.2e+02 Score=23.81 Aligned_cols=58 Identities=10% Similarity=-0.035 Sum_probs=32.0
Q ss_pred CCHHHH---HHHHHHHhhCCCEEEEECCHH------HHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 37 DSFVDR---KVIERLLTISSCKVTAVDSGR------RALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 37 D~~~~~---~~L~~~L~~~g~~v~~a~~g~------~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
+++... +.+++.+++.||.+..+.... +.++.+ ...++|-||+-- ....-+.+++++
T Consensus 23 ~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l-----------~~~~vdGiI~~~---~~~~~~~~~~l~ 88 (295)
T 3hcw_A 23 LNPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMI-----------KQRMVDAFILLY---SKENDPIKQMLI 88 (295)
T ss_dssp SCHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHH-----------HTTCCSEEEESC---CCTTCHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHH-----------HhCCcCEEEEcC---cccChHHHHHHH
Confidence 354444 446677788899988754321 234444 456788776532 111125566665
Q ss_pred h
Q 023816 108 V 108 (276)
Q Consensus 108 ~ 108 (276)
.
T Consensus 89 ~ 89 (295)
T 3hcw_A 89 D 89 (295)
T ss_dssp H
T ss_pred h
Confidence 4
No 433
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=21.45 E-value=1.9e+02 Score=24.23 Aligned_cols=58 Identities=12% Similarity=0.104 Sum_probs=31.2
Q ss_pred CCHHHH---HHHHHHHhhCCCEEEEECCH-----HHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 37 DSFVDR---KVIERLLTISSCKVTAVDSG-----RRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 37 D~~~~~---~~L~~~L~~~g~~v~~a~~g-----~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
+++... +.+++.+++.||.+..+... .+.++.+ ....+|-||+--... +. +.+++++.
T Consensus 21 ~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l-----------~~~~vdGiIi~~~~~--~~-~~~~~l~~ 86 (294)
T 3qk7_A 21 NNSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLV-----------ETRRVDALIVAHTQP--ED-FRLQYLQK 86 (294)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHH-----------HHTCCSEEEECSCCS--SC-HHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHH-----------HcCCCCEEEEeCCCC--Ch-HHHHHHHh
Confidence 445444 44566777889988764322 3344544 344677666532221 11 55666654
No 434
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=21.40 E-value=3.4e+02 Score=22.24 Aligned_cols=54 Identities=9% Similarity=0.032 Sum_probs=30.9
Q ss_pred HHHHHHHHhhCCCEEEEECC---HH---HHHHHhcccccccccCCCCCceeEEEEecCCCCCCH-HHHHHHHHh
Q 023816 42 RKVIERLLTISSCKVTAVDS---GR---RALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG-YELLKKIKV 108 (276)
Q Consensus 42 ~~~L~~~L~~~g~~v~~a~~---g~---~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G-~ell~~Ir~ 108 (276)
.+.+++.++..||++..+.. .+ +.++.+ ...++|-||+.-. ..+. .+.++++++
T Consensus 20 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l-----------~~~~vdgiIi~~~--~~~~~~~~~~~~~~ 80 (271)
T 2dri_A 20 KDGAQKEADKLGYNLVVLDSQNNPAKELANVQDL-----------TVRGTKILLINPT--DSDAVGNAVKMANQ 80 (271)
T ss_dssp HHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHH-----------TTTTEEEEEECCS--STTTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHH-----------HHcCCCEEEEeCC--ChHHHHHHHHHHHH
Confidence 34457777888999887532 22 234444 4567998776321 2222 345666664
No 435
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=21.38 E-value=56 Score=26.62 Aligned_cols=51 Identities=16% Similarity=0.099 Sum_probs=31.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 30 VHVLAVDDSFVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~~~g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
.+|..||=++...+..++.++..|.++.. ..+.. .+ ..+....||+|+++.
T Consensus 80 ~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~-~~-----------~~~~~~~fD~I~~np 131 (230)
T 3evz_A 80 CKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGG-II-----------KGVVEGTFDVIFSAP 131 (230)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSC-SS-----------TTTCCSCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCch-hh-----------hhcccCceeEEEECC
Confidence 57888888888888888777776643322 12211 01 111346799999883
No 436
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=21.36 E-value=55 Score=26.64 Aligned_cols=46 Identities=22% Similarity=0.148 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhcccccccccCCCCCceeEEEEe
Q 023816 40 VDRKVIERLLTISSCKVTA---VDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91 (276)
Q Consensus 40 ~~~~~L~~~L~~~g~~v~~---a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D 91 (276)
.+...|.+.|+..|+++.. +.+..++++..-... .+....|+||+-
T Consensus 21 ~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~------~~~~~~DlVitt 69 (164)
T 2is8_A 21 TTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLW------ADREGLDLILTN 69 (164)
T ss_dssp CHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHH------HHTSCCSEEEEE
T ss_pred chHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHH------HhcCCCCEEEEc
Confidence 4667899999999987653 444444333221110 011258999976
No 437
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=21.28 E-value=3.6e+02 Score=22.55 Aligned_cols=39 Identities=18% Similarity=0.072 Sum_probs=24.2
Q ss_pred HHHHHHHHhhCCC---EEE--EEC---CHH---HHHHHhcccccccccCCCCCceeEEEEe
Q 023816 42 RKVIERLLTISSC---KVT--AVD---SGR---RALQFLGLDEEQSINGFDGLKVDLIITD 91 (276)
Q Consensus 42 ~~~L~~~L~~~g~---~v~--~a~---~g~---~al~~l~~~~~~~~~~~~~~~~DlIL~D 91 (276)
.+.+++.|...|| .+. .++ +.+ +.++.+ ...++|.||+-
T Consensus 20 ~~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~~~l-----------~~~~vDgII~~ 69 (295)
T 3lft_A 20 YKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQL-----------VANGNDLVVGI 69 (295)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHHHHH-----------TTSSCSEEEEE
T ss_pred HHHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHHHHH-----------HhcCCCEEEEC
Confidence 4557788889999 543 233 222 344444 66789998863
No 438
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=21.26 E-value=2.1e+02 Score=25.38 Aligned_cols=43 Identities=14% Similarity=0.262 Sum_probs=32.3
Q ss_pred CeEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 023816 158 IPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 202 (276)
Q Consensus 158 ipiV~ls~~~~~~~~~~al~~Ga~d~l~KPv~~~~L~~~~~~l~~ 202 (276)
.+|++-. ...+...+|+++|++-...-+++++.++++++.+..
T Consensus 183 ~~i~vev--~tlee~~~A~~aGaD~I~ld~~~~~~l~~~v~~l~~ 225 (273)
T 2b7n_A 183 AKIEIEC--ESFEEAKNAMNAGADIVMCDNLSVLETKEIAAYRDA 225 (273)
T ss_dssp CCEEEEE--SSHHHHHHHHHHTCSEEEEETCCHHHHHHHHHHHHH
T ss_pred ceEEEEc--CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhc
Confidence 4555543 234678889999998888999999999887776653
No 439
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=21.24 E-value=1e+02 Score=28.13 Aligned_cols=38 Identities=26% Similarity=0.423 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCCeEEeCCCC--HHHHHHHHHHHHHhhhc
Q 023816 169 LARIDRCLEDGAEDFIVKPVK--LSDVKRIKDYLTRDVNL 206 (276)
Q Consensus 169 ~~~~~~al~~Ga~d~l~KPv~--~~~L~~~~~~l~~~~~~ 206 (276)
...+.+.++-|...|+.|=+. -.+...++..+.+....
T Consensus 166 L~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~F~~ 205 (277)
T 3evf_A 166 LDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGG 205 (277)
T ss_dssp HHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHhcCC
Confidence 456678888887789999776 56666666666655443
No 440
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=21.12 E-value=3.2e+02 Score=22.69 Aligned_cols=56 Identities=11% Similarity=-0.006 Sum_probs=37.6
Q ss_pred CccEEEEEeCCH---HHHHHHHHHHhhCCCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCC
Q 023816 28 EEVHVLAVDDSF---VDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM 94 (276)
Q Consensus 28 ~~~~VLIVdD~~---~~~~~L~~~L~~~g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~m 94 (276)
.++.+-+.-.++ ...+.|+..|+..|++|.. ..+.....+.+ ....+|+++..+..
T Consensus 127 ~~l~l~~~~~~~~~~~~a~~iq~~l~~iGI~v~i~~~~~~~~~~~~-----------~~~~~d~~~~~w~~ 186 (259)
T 3pam_A 127 LPFQFEIMTQSLEEEKVALAFQSNLSRLGIHAEIRTVDDSQYQNRL-----------GMFNYDMIIGKLKN 186 (259)
T ss_dssp CBCEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHHHHH-----------HHTCCSEEEEEECC
T ss_pred cEEEEEEEeCCchHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHHH-----------hcCCeeEEEeccCC
Confidence 345655444443 3455788889999998876 55666666665 44579999988754
No 441
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=21.12 E-value=2.6e+02 Score=24.02 Aligned_cols=54 Identities=7% Similarity=-0.092 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhCCCEEEEECC---HH---HHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 41 DRKVIERLLTISSCKVTAVDS---GR---RALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 41 ~~~~L~~~L~~~g~~v~~a~~---g~---~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
..+.+++.++..||.+..+.. .+ +.++.+ ...++|-||+- |.....+.++.++.
T Consensus 86 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l-----------~~~~vdGiIi~---~~~~~~~~~~~l~~ 145 (344)
T 3kjx_A 86 VLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEM-----------LSWRPSGVIIA---GLEHSEAARAMLDA 145 (344)
T ss_dssp HHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHH-----------HTTCCSEEEEE---CSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHH-----------HhCCCCEEEEE---CCCCCHHHHHHHHh
Confidence 345577778888999877542 22 234444 45567766653 22222356666654
No 442
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=21.10 E-value=1.4e+02 Score=27.25 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=43.1
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHhhCCCEEEEEC---------CHHHHHHHhcccccccccCCCCCceeEEEEecCCC
Q 023816 30 VHVLAVDDSFV-----DRKVIERLLTISSCKVTAVD---------SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (276)
Q Consensus 30 ~~VLIVdD~~~-----~~~~L~~~L~~~g~~v~~a~---------~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp 95 (276)
-++|||-|... ..+.+.+.|+..|+++..++ +.+++++.+ ++.++|+||- +.
T Consensus 41 ~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~-----------~~~~~d~IIa---vG 106 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERY-----------RNDSFDFVVG---LG 106 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHH-----------TTSCCSEEEE---EE
T ss_pred CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHH-----------HhcCCCEEEE---eC
Confidence 38898887733 34677778888888765532 233444544 5567898882 34
Q ss_pred CCCHHHHHHHHHhh
Q 023816 96 GMTGYELLKKIKVT 109 (276)
Q Consensus 96 ~~~G~ell~~Ir~~ 109 (276)
|.+-.++.|.+...
T Consensus 107 GGsv~D~AK~iA~~ 120 (371)
T 1o2d_A 107 GGSPMDFAKAVAVL 120 (371)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 66667788887754
No 443
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=21.00 E-value=3.1e+02 Score=22.72 Aligned_cols=54 Identities=7% Similarity=-0.163 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhCCCEEEEECC------HHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHHh
Q 023816 41 DRKVIERLLTISSCKVTAVDS------GRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKV 108 (276)
Q Consensus 41 ~~~~L~~~L~~~g~~v~~a~~------g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir~ 108 (276)
..+.+++.++..||++..... ..+.++.+ ...++|-||+--... +. +.+++++.
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l-----------~~~~vdgiIi~~~~~--~~-~~~~~l~~ 85 (287)
T 3bbl_A 26 FLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLI-----------RSGNVDGFVLSSINY--ND-PRVQFLLK 85 (287)
T ss_dssp HHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHH-----------HTTCCSEEEECSCCT--TC-HHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHH-----------HcCCCCEEEEeecCC--Cc-HHHHHHHh
Confidence 445567778889998877542 13455555 455788777643211 11 55666654
No 444
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=20.88 E-value=1.6e+02 Score=24.00 Aligned_cols=60 Identities=13% Similarity=0.039 Sum_probs=37.4
Q ss_pred ccEEEEEeCCH---HHHHHHHHHHhh-C-CCEEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHH
Q 023816 29 EVHVLAVDDSF---VDRKVIERLLTI-S-SCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGY 100 (276)
Q Consensus 29 ~~~VLIVdD~~---~~~~~L~~~L~~-~-g~~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ 100 (276)
.++++. .+++ ...+.|+..|+. . |++|.. ..+..+-++.+ ....+|++++.+.....+..
T Consensus 100 ~l~l~~-~~~~~~~~~a~~i~~~l~~~i~GI~v~i~~~~~~~~~~~~-----------~~g~~d~~~~~w~~~~~dp~ 165 (229)
T 3o6p_A 100 TMDILS-SDADSSKKTVEFVQGSIQDALDGVKVTVSPVPFSVRLDRS-----------NKGDFDAVIGGWSADYADPS 165 (229)
T ss_dssp EEEEEE-ECSHHHHHHHHHHHHHHHHHSTTEEEEEEEECHHHHHHHH-----------HHTCCSEEEEEEECSSSCTH
T ss_pred EEEEEe-CCChHHHHHHHHHHHHHHHhCCCcEEEEEecCHHHHHHHh-----------hcCCceEEEecccCCCcCHH
Confidence 344444 4443 345678888888 8 988776 34555555555 34579999988865433443
No 445
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=20.76 E-value=74 Score=30.26 Aligned_cols=53 Identities=9% Similarity=0.081 Sum_probs=37.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhC--CC-EEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEec
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTIS--SC-KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~--g~-~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~ 92 (276)
..+|..||-++...+..++-++.. |. ++.. ..+..+.+..+ ....||+|++|-
T Consensus 115 g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~-----------~~~~fDvV~lDP 171 (410)
T 3ll7_A 115 ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLI-----------KTFHPDYIYVDP 171 (410)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHH-----------HHHCCSEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhc-----------cCCCceEEEECC
Confidence 358999999999999999988877 65 4433 45555444432 123699999984
No 446
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=20.57 E-value=2.2e+02 Score=23.85 Aligned_cols=68 Identities=12% Similarity=0.012 Sum_probs=38.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhCCC--EEEE-ECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCC-CHHHHHH
Q 023816 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM-TGYELLK 104 (276)
Q Consensus 29 ~~~VLIVdD~~~~~~~L~~~L~~~g~--~v~~-a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~-~G~ell~ 104 (276)
..+|..||-++...+..++.++..|. .+.. ..+..+... +....||+|++...+--. +-.++++
T Consensus 90 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------------~~~~~fD~v~~~~~l~~~~~~~~~l~ 157 (285)
T 4htf_A 90 GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS------------HLETPVDLILFHAVLEWVADPRSVLQ 157 (285)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG------------GCSSCEEEEEEESCGGGCSCHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh------------hcCCCceEEEECchhhcccCHHHHHH
Confidence 34677777777777777777766553 2222 223221110 134679999998755432 3456777
Q ss_pred HHHh
Q 023816 105 KIKV 108 (276)
Q Consensus 105 ~Ir~ 108 (276)
++++
T Consensus 158 ~~~~ 161 (285)
T 4htf_A 158 TLWS 161 (285)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 447
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=20.37 E-value=1.9e+02 Score=24.43 Aligned_cols=40 Identities=10% Similarity=-0.003 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhCCCEEEEECCH------HHHHHHhcccccccccCCCCCceeEEEEe
Q 023816 41 DRKVIERLLTISSCKVTAVDSG------RRALQFLGLDEEQSINGFDGLKVDLIITD 91 (276)
Q Consensus 41 ~~~~L~~~L~~~g~~v~~a~~g------~~al~~l~~~~~~~~~~~~~~~~DlIL~D 91 (276)
..+.+++.+++.||.+..+... .+.++.+ ...++|-||+-
T Consensus 33 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l-----------~~~~vdgiI~~ 78 (303)
T 3kke_A 33 MFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLV-----------SEGRVDGVLLQ 78 (303)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHH-----------HSCSSSEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHH-----------HhCCCcEEEEe
Confidence 3455677778889988764422 2344444 45567766653
No 448
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=20.13 E-value=3.5e+02 Score=23.60 Aligned_cols=36 Identities=19% Similarity=0.119 Sum_probs=26.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHhhCCCEEEEECC
Q 023816 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDS 61 (276)
Q Consensus 26 ~~~~~~VLIVdD~~~~~~~L~~~L~~~g~~v~~a~~ 61 (276)
+...-+|||..-.--.-..+.+.|...|++|..+..
T Consensus 5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r 40 (319)
T 3ioy_A 5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADI 40 (319)
T ss_dssp CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEEC
Confidence 344557888887777777777777788999887543
No 449
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=20.10 E-value=2.3e+02 Score=25.75 Aligned_cols=26 Identities=12% Similarity=-0.040 Sum_probs=20.5
Q ss_pred eEEEEecCCCHHHHHHHHhcCCCeEE
Q 023816 159 PVVIMSSENILARIDRCLEDGAEDFI 184 (276)
Q Consensus 159 piV~ls~~~~~~~~~~al~~Ga~d~l 184 (276)
..+..|+.-..+.+.+..+.|++-+-
T Consensus 243 v~ieaSGGIt~~~i~~~a~tGVD~Is 268 (287)
T 3tqv_A 243 VALEVSGNIDRNSIVAIAKTGVDFIS 268 (287)
T ss_dssp CEEEEESSCCTTTHHHHHTTTCSEEE
T ss_pred ceEEEECCCCHHHHHHHHHcCCCEEE
Confidence 55668888888889888899996553
No 450
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=20.06 E-value=2e+02 Score=25.08 Aligned_cols=65 Identities=12% Similarity=0.122 Sum_probs=35.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHh-hCCCEEEEECCHHHHHHHhcccccccccCCCCCceeEEEEecCCCCCCHHHHHHHHH
Q 023816 30 VHVLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (276)
Q Consensus 30 ~~VLIVdD~~~~~~~L~~~L~-~~g~~v~~a~~g~~al~~l~~~~~~~~~~~~~~~~DlIL~D~~mp~~~G~ell~~Ir 107 (276)
++|.|+.-.--+-+.+.+.+. ..++++..+-+-.+-++.+ ....+| |++|+.-|. ...+.++...
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~-----------~~~~~D-vvIDfT~p~-a~~~~~~~a~ 66 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLL-----------TDGNTE-VVIDFTHPD-VVMGNLEFLI 66 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHH-----------HHTTCC-EEEECSCTT-THHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHH-----------hccCCc-EEEEccChH-HHHHHHHHHH
Confidence 467888764444454555554 4589988753211111111 112478 778988775 4566666544
No 451
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=20.05 E-value=1.8e+02 Score=26.36 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=20.6
Q ss_pred CCeEEEEe--cCCCHHHHHHHHhcCCCeEEe
Q 023816 157 EIPVVIMS--SENILARIDRCLEDGAEDFIV 185 (276)
Q Consensus 157 ~ipiV~ls--~~~~~~~~~~al~~Ga~d~l~ 185 (276)
.+++++|+ +......+.+|.++|++.+..
T Consensus 82 ~~~i~~l~~p~~~~~~~i~~a~~aGvd~v~I 112 (345)
T 1nvm_A 82 HAQIATLLLPGIGSVHDLKNAYQAGARVVRV 112 (345)
T ss_dssp SSEEEEEECBTTBCHHHHHHHHHHTCCEEEE
T ss_pred CCEEEEEecCCcccHHHHHHHHhCCcCEEEE
Confidence 57777774 344567788888888887655
Done!