BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023819
         (276 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1J6W|A Chain A, Crystal Structure Of Haemophilus Influenzae Luxs
 pdb|1J6W|B Chain B, Crystal Structure Of Haemophilus Influenzae Luxs
          Length = 175

 Score = 28.9 bits (63), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 210 LAHQQTISIIQERASLPIISLQPVVAGAAKKTSHAVGQATKTLMNMISRGELSSENED 267
           LA  Q +  +Q++AS+P +++          T H++  A +   N+I+RG   ++NED
Sbjct: 105 LASXQDVLGVQDQASIPELNIYQ----CGSYTEHSLEDAHEIAKNVIARGIGVNKNED 158


>pdb|1JOE|A Chain A, Crystal Structure Of Autoinducer-2 Production Protein
           (Luxs) From Heamophilus Influenzae
 pdb|1JOE|B Chain B, Crystal Structure Of Autoinducer-2 Production Protein
           (Luxs) From Heamophilus Influenzae
 pdb|1JOE|C Chain C, Crystal Structure Of Autoinducer-2 Production Protein
           (Luxs) From Heamophilus Influenzae
 pdb|1JOE|D Chain D, Crystal Structure Of Autoinducer-2 Production Protein
           (Luxs) From Heamophilus Influenzae
          Length = 167

 Score = 28.9 bits (63), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 210 LAHQQTISIIQERASLPIISLQPVVAGAAKKTSHAVGQATKTLMNMISRGELSSENED 267
           LA  Q +  +Q++AS+P ++    +      T H++  A +   N+I+RG   ++NED
Sbjct: 105 LASMQDVLGVQDQASIPELN----IYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNED 158


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.127    0.346 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,587,201
Number of Sequences: 62578
Number of extensions: 222470
Number of successful extensions: 558
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 558
Number of HSP's gapped (non-prelim): 9
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)