BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023819
         (276 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9P2F8|SI1L2_HUMAN Signal-induced proliferation-associated 1-like protein 2 OS=Homo
            sapiens GN=SIPA1L2 PE=1 SV=2
          Length = 1722

 Score = 35.4 bits (80), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 23/141 (16%)

Query: 119  ACTTSVAFTSLVVAAIPALYAMGRAA--TSLSKLADTAREELPSTMAAIRLSGMEISDLT 176
            +C   + +TS +V+ I   Y  G     +S+   A+  RE +   +   R  G E  ++T
Sbjct: 896  SCRDVIGWTSGLVS-IKVFYERGECVLLSSVDNCAEDIREIVQRLVIVTR--GCETVEMT 952

Query: 177  LELSDLSQEIADGVNKSAQAVQ------AAEAGIRQ-----------IGTLAHQQTISII 219
            L  + L Q +   VN             A +AG+RQ           + TL H+Q I ++
Sbjct: 953  LRRNGLGQ-LGFHVNFEGIVADVEPFGFAWKAGLRQGSRLVEICKVAVATLTHEQMIDLL 1011

Query: 220  QERASLPIISLQPVVAGAAKK 240
            +   ++ ++ +QP   G+ ++
Sbjct: 1012 RTSVTVKVVIIQPHDDGSPRR 1032


>sp|Q80TE4|SI1L2_MOUSE Signal-induced proliferation-associated 1-like protein 2 OS=Mus
            musculus GN=Sipa1l2 PE=1 SV=3
          Length = 1722

 Score = 35.4 bits (80), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 23/141 (16%)

Query: 119  ACTTSVAFTSLVVAAIPALYAMGRAA--TSLSKLADTAREELPSTMAAIRLSGMEISDLT 176
            +C   + +TS +V+ I A Y  G     +S+   ++  RE +   +   R  G E  ++T
Sbjct: 897  SCRDVIGWTSGLVS-IKAFYERGECLLLSSVDNRSEDIREIVQRLLIVTR--GCETVEMT 953

Query: 177  LELSDLSQEIADGVNKSAQAVQ------AAEAGIRQ-----------IGTLAHQQTISII 219
            L  + L Q +   VN             A +AG+RQ           + TL H+Q I ++
Sbjct: 954  LRRNGLGQ-LGFHVNFEGIVADVEPFGFAWKAGLRQGSRLVEICKVAVATLTHEQMIDLL 1012

Query: 220  QERASLPIISLQPVVAGAAKK 240
            +   ++ ++ +QP   G+ ++
Sbjct: 1013 RTSVTVKVVIIQPHEDGSPRR 1033


>sp|P11109|EXO2_BPT5 Probable exonuclease subunit 2 OS=Enterobacteria phage T5 GN=D13
           PE=4 SV=1
          Length = 612

 Score = 33.1 bits (74), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 139 AMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSA 194
           A  RA  +L K A  AR+E  ++M+      + +  L +++  L QEIADG +K A
Sbjct: 358 AYTRAKDALDK-AVVARDEFKNSMSDASFEELNVQILQVQIRQLEQEIADGRSKVA 412


>sp|Q4PI89|SPT6_USTMA Transcription elongation factor SPT6 OS=Ustilago maydis (strain 521 /
            FGSC 9021) GN=SPT6 PE=3 SV=1
          Length = 1723

 Score = 31.2 bits (69), Expect = 8.2,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 142  RAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAE 201
            RAA    +L++  R      +A  R +   +++     SDL+  I D   +     +   
Sbjct: 962  RAAEEFPELSELGR----YCLALARYAQSPVNEFAALGSDLTAVILDPNQRLLPQDRLRL 1017

Query: 202  AGIRQIGTLAHQQTISIIQERASLPIISLQPVVAGAAKKTSHAVGQATKTLM--NMISRG 259
               R IG + ++  + I Q   S  + ++ P VAG   + +HA+  A  T +   +I+R 
Sbjct: 1018 HFERCIGAVVNENGVEINQAMTSTYLQTMLPFVAGLGPRKAHALVNAISTKLEGTLINRT 1077

Query: 260  ELSSEN 265
             L S N
Sbjct: 1078 LLISRN 1083


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.127    0.346 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,161,226
Number of Sequences: 539616
Number of extensions: 3087457
Number of successful extensions: 10634
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 10631
Number of HSP's gapped (non-prelim): 27
length of query: 276
length of database: 191,569,459
effective HSP length: 116
effective length of query: 160
effective length of database: 128,974,003
effective search space: 20635840480
effective search space used: 20635840480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)