Query 023819
Match_columns 276
No_of_seqs 71 out of 73
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 06:53:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023819.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023819hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06103 DUF948: Bacterial pro 98.2 2.4E-05 5.3E-10 59.3 10.8 66 118-183 2-67 (90)
2 COG4768 Uncharacterized protei 97.1 0.015 3.3E-07 50.2 12.5 117 113-243 2-128 (139)
3 PF06103 DUF948: Bacterial pro 94.3 1.2 2.6E-05 33.8 11.0 75 113-187 4-78 (90)
4 PRK10755 sensor protein BasS/P 83.5 12 0.00027 32.9 9.6 67 126-192 68-136 (356)
5 PRK15048 methyl-accepting chem 82.9 47 0.001 32.1 16.5 54 156-209 259-312 (553)
6 PRK09793 methyl-accepting prot 81.0 57 0.0012 31.8 16.7 50 158-207 259-308 (533)
7 TIGR01386 cztS_silS_copS heavy 78.0 51 0.0011 29.4 12.9 37 170-206 218-254 (457)
8 PRK10815 sensor protein PhoQ; 77.0 46 0.00099 32.1 11.8 37 170-206 243-279 (485)
9 PF05659 RPW8: Arabidopsis bro 75.2 29 0.00062 29.6 8.9 47 145-192 34-81 (147)
10 PRK15041 methyl-accepting chem 73.6 97 0.0021 30.5 16.3 19 171-189 276-294 (554)
11 TIGR03785 marine_sort_HK prote 71.5 1.2E+02 0.0026 31.1 13.7 38 169-206 461-498 (703)
12 PRK09835 sensor kinase CusS; P 69.4 80 0.0017 28.7 10.9 24 170-193 239-262 (482)
13 PLN03094 Substrate binding sub 68.2 96 0.0021 30.5 11.8 74 145-221 253-327 (370)
14 PF06305 DUF1049: Protein of u 66.3 43 0.00093 23.8 7.0 34 126-159 32-65 (68)
15 PF12955 DUF3844: Domain of un 62.2 6.2 0.00013 32.7 2.2 17 147-163 86-102 (103)
16 PRK10600 nitrate/nitrite senso 61.5 1E+02 0.0022 29.8 10.6 22 171-192 179-200 (569)
17 PRK09470 cpxA two-component se 56.9 1.2E+02 0.0026 27.3 9.6 38 168-205 218-255 (461)
18 cd00193 t_SNARE Soluble NSF (N 55.6 38 0.00083 22.6 4.9 47 160-206 13-59 (60)
19 PRK04654 sec-independent trans 53.7 1.3E+02 0.0029 28.0 9.4 58 138-200 30-87 (214)
20 PRK09467 envZ osmolarity senso 52.8 88 0.0019 28.2 8.1 19 170-188 206-224 (435)
21 PRK10604 sensor protein RstB; 50.2 1.6E+02 0.0034 27.4 9.6 38 169-206 188-225 (433)
22 PF07464 ApoLp-III: Apolipopho 45.6 74 0.0016 27.7 6.3 78 139-219 53-130 (155)
23 TIGR02105 III_needle type III 45.1 52 0.0011 25.6 4.7 68 178-257 2-69 (72)
24 PF11932 DUF3450: Protein of u 44.8 2.3E+02 0.005 25.3 12.7 52 132-183 25-76 (251)
25 PRK10935 nitrate/nitrite senso 44.1 2.7E+02 0.0058 26.3 10.1 23 170-192 206-228 (565)
26 PF05529 Bap31: B-cell recepto 42.4 2.2E+02 0.0047 24.3 9.9 76 104-188 96-172 (192)
27 PF05884 ZYG-11_interact: Inte 42.2 1.1E+02 0.0025 29.6 7.5 84 158-241 12-110 (299)
28 PF08397 IMD: IRSp53/MIM homol 42.2 2.1E+02 0.0045 25.2 8.6 82 135-221 10-91 (219)
29 PLN02870 Probable galacturonos 41.8 79 0.0017 32.9 6.7 29 178-206 123-151 (533)
30 PF05524 PEP-utilisers_N: PEP- 41.3 1.8E+02 0.0038 22.9 7.6 28 138-165 42-69 (123)
31 PRK10337 sensor protein QseC; 39.3 3E+02 0.0065 25.1 12.8 68 139-206 181-250 (449)
32 PF11887 DUF3407: Protein of u 39.2 3.1E+02 0.0067 25.2 10.5 94 127-221 41-137 (267)
33 PRK04654 sec-independent trans 37.6 3.5E+02 0.0075 25.4 9.5 20 139-158 24-43 (214)
34 COG4965 TadB Flp pilus assembl 37.6 4E+02 0.0086 26.0 10.4 56 132-191 116-186 (309)
35 PLN02867 Probable galacturonos 37.3 1.8E+02 0.004 30.3 8.5 36 173-208 123-158 (535)
36 PF12732 YtxH: YtxH-like prote 36.8 1.1E+02 0.0024 22.7 5.2 18 114-131 2-19 (74)
37 PF11887 DUF3407: Protein of u 36.7 2.2E+02 0.0048 26.1 8.2 56 139-198 32-87 (267)
38 KOG0994 Extracellular matrix g 36.7 2.4E+02 0.0052 32.9 9.7 50 145-194 1471-1528(1758)
39 smart00787 Spc7 Spc7 kinetocho 34.2 3.7E+02 0.0081 25.6 9.5 80 150-229 205-293 (312)
40 PRK11637 AmiB activator; Provi 33.7 4.4E+02 0.0095 25.3 10.7 23 157-179 69-91 (428)
41 COG0811 TolQ Biopolymer transp 32.5 1.9E+02 0.004 25.8 6.8 29 128-156 172-200 (216)
42 COG4768 Uncharacterized protei 32.4 3.6E+02 0.0077 23.9 12.2 110 114-224 10-135 (139)
43 PRK00708 sec-independent trans 32.2 4.1E+02 0.009 24.6 9.1 25 138-162 30-54 (209)
44 PRK11107 hybrid sensory histid 32.2 5.4E+02 0.012 25.9 11.0 19 170-188 231-249 (919)
45 PF11221 Med21: Subunit 21 of 31.8 2.8E+02 0.0061 23.2 7.4 64 141-208 79-142 (144)
46 PF05739 SNARE: SNARE domain; 31.8 1.7E+02 0.0036 20.3 5.2 50 158-207 9-58 (63)
47 PF00672 HAMP: HAMP domain; I 30.8 9.1 0.0002 26.4 -1.3 20 168-187 50-69 (70)
48 PF10824 DUF2580: Protein of u 30.2 2.1E+02 0.0046 20.6 7.8 23 139-161 11-33 (100)
49 TIGR01386 cztS_silS_copS heavy 30.1 3.1E+02 0.0068 24.5 7.9 7 141-147 193-199 (457)
50 PF07465 PsaM: Photosystem I p 30.1 66 0.0014 21.6 2.7 16 126-141 7-22 (29)
51 COG4575 ElaB Uncharacterized c 29.9 1.5E+02 0.0034 24.9 5.5 48 173-220 11-58 (104)
52 PF15195 TMEM210: TMEM210 fami 29.9 32 0.0007 29.2 1.5 36 104-139 6-42 (116)
53 PF14341 PilX_N: PilX N-termin 29.0 94 0.002 22.0 3.6 22 184-205 30-51 (51)
54 CHL00190 psaM photosystem I su 28.0 72 0.0016 21.6 2.7 16 126-141 8-23 (30)
55 PF09392 MxiH: Type III secret 27.9 1.3E+02 0.0027 23.1 4.4 39 214-255 52-90 (90)
56 PF02203 TarH: Tar ligand bind 27.8 1E+02 0.0022 24.4 4.0 32 127-161 20-51 (171)
57 TIGR03053 PS_I_psaM photosyste 27.6 75 0.0016 21.2 2.7 16 126-141 7-22 (29)
58 smart00397 t_SNARE Helical reg 27.5 1.9E+02 0.0042 19.3 4.8 44 163-206 22-65 (66)
59 COG2165 PulG Type II secretory 25.7 2.5E+02 0.0055 21.1 5.7 28 126-153 22-49 (149)
60 PF14584 DUF4446: Protein of u 24.9 4.2E+02 0.0092 22.9 7.5 22 130-151 15-36 (151)
61 PRK10600 nitrate/nitrite senso 24.5 6.6E+02 0.014 24.4 10.4 39 165-203 180-218 (569)
62 PRK11878 psaM photosystem I re 23.7 94 0.002 21.5 2.7 16 126-141 11-26 (34)
63 PRK11360 sensory histidine kin 23.6 5.3E+02 0.011 23.6 8.2 19 170-188 241-259 (607)
64 PRK10574 putative major pilin 23.5 3E+02 0.0065 23.5 6.3 27 126-152 19-45 (146)
65 PLN02659 Probable galacturonos 23.2 1.4E+02 0.003 31.2 4.9 35 172-206 118-152 (534)
66 PRK10983 putative inner membra 22.9 6.8E+02 0.015 24.0 9.9 45 126-170 72-121 (368)
67 PRK15344 type III secretion sy 22.8 2E+02 0.0044 22.7 4.7 65 170-254 1-65 (71)
68 COG3599 DivIVA Cell division i 22.7 6E+02 0.013 23.3 8.9 70 145-221 26-96 (212)
69 smart00283 MA Methyl-accepting 22.4 4.5E+02 0.0098 21.7 12.1 29 137-165 41-69 (262)
70 PF09177 Syntaxin-6_N: Syntaxi 21.9 3.8E+02 0.0083 20.7 6.3 60 139-203 9-68 (97)
71 KOG4331 Polytopic membrane pro 21.4 1.2E+03 0.025 26.2 11.6 27 172-198 247-273 (865)
72 PF05984 Cytomega_UL20A: Cytom 21.3 76 0.0017 26.4 2.2 17 110-126 3-19 (100)
73 TIGR01113 mtrE N5-methyltetrah 20.7 4.5E+02 0.0097 25.6 7.4 14 150-163 118-131 (283)
74 PF11812 DUF3333: Domain of un 20.6 1.5E+02 0.0033 25.8 4.0 27 108-134 11-37 (155)
75 PF00015 MCPsignal: Methyl-acc 20.3 4.8E+02 0.01 21.3 8.1 37 172-208 140-176 (213)
76 PF04206 MtrE: Tetrahydrometha 20.2 4E+02 0.0087 25.8 6.9 14 150-163 118-131 (269)
No 1
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=98.22 E-value=2.4e-05 Score=59.33 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHhhcchhhhhhHHhhhhh
Q 023819 118 IACTTSVAFTSLVVAAIPALYAMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLS 183 (276)
Q Consensus 118 ~~~vvavAltaLl~~AIPtL~AlkRAA~SleKL~Dtv~eELP~TLAAIRLSGlEISDLT~eLsdLs 183 (276)
++++.|+||..|+++++++|..+++..+++++..+.+.+++.+.+..+.-.-.+.+++++|+.+-.
T Consensus 2 a~lI~Aiaf~vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~ 67 (90)
T PF06103_consen 2 AGLIAAIAFAVLVIFLIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKL 67 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999999866666666666666555333
No 2
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=97.07 E-value=0.015 Score=50.21 Aligned_cols=117 Identities=21% Similarity=0.256 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHhhcchhhhhhHHhhhhhHHHH-----
Q 023819 113 FLLAFIACTTSVAFTSLVVAAIPALYAMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIA----- 187 (276)
Q Consensus 113 ~lLs~~~~vvavAltaLl~~AIPtL~AlkRAA~SleKL~Dtv~eELP~TLAAIRLSGlEISDLT~eLsdLsQei~----- 187 (276)
|++.+++.++|+||.+|++..|-++..+.++-..++|-.+.+.-++-+++. |=.||+.-.+-|.+|+.
T Consensus 2 ~ilyIs~~iiAiAf~vL~I~li~tlkkv~~tldevakt~~~l~~qv~gi~~-------eT~~Ll~K~N~L~eDvq~Kv~t 74 (139)
T COG4768 2 IILYISLAIIAIAFLVLVIYLIITLKKVSKTLDEVAKTLKGLTSQVDGITH-------ETEELLHKTNTLAEDVQGKVAT 74 (139)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhHHh
Confidence 567788899999999999999999999999999999999999999988875 44455555555544443
Q ss_pred -----HHHHHHHHHHHHHHHhhhhhccchhhhhHHHHHhhhcCCcccchhHHHhHHHHhhh
Q 023819 188 -----DGVNKSAQAVQAAEAGIRQIGTLAHQQTISIIQERASLPIISLQPVVAGAAKKTSH 243 (276)
Q Consensus 188 -----~GVrssa~~V~aaeaglrq~~~~A~~~t~~~lqErA~l~~~s~~PvVa~AA~kt~~ 243 (276)
+.|+...+.|+..-+..|+.++.+...+.+--. .+ .+-|+.+.|.+.+.
T Consensus 75 ld~vf~aV~dl~~SV~~ln~s~r~~~~~~t~~~~~~~~------~i-aq~v~~~~A~~~~~ 128 (139)
T COG4768 75 LDPVFDAVKDLGQSVSDLNQSVRHLATRATNAVEKNEK------KI-AQAVVSNVASKFFK 128 (139)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHH------HH-HHHHHHHHHHHHHH
Confidence 334445666666666777777766644422221 12 24555566665554
No 3
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=94.34 E-value=1.2 Score=33.78 Aligned_cols=75 Identities=8% Similarity=0.116 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHhhcchhhhhhHHhhhhhHHHH
Q 023819 113 FLLAFIACTTSVAFTSLVVAAIPALYAMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIA 187 (276)
Q Consensus 113 ~lLs~~~~vvavAltaLl~~AIPtL~AlkRAA~SleKL~Dtv~eELP~TLAAIRLSGlEISDLT~eLsdLsQei~ 187 (276)
++.++++.+..+.+.-++.-+-+++.++.+..+.+++=.|-+.+|...+++..+-.--++.+-++.++.+.+.+.
T Consensus 4 lI~Aiaf~vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~ 78 (90)
T PF06103_consen 4 LIAAIAFAVLVIFLIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVA 78 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 445566666777778888888899999999999999999999999999998888877777777777775554443
No 4
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=83.51 E-value=12 Score=32.91 Aligned_cols=67 Identities=15% Similarity=0.257 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHH--hhcchhhhhhHHhhhhhHHHHHHHHH
Q 023819 126 FTSLVVAAIPALYAMGRAATSLSKLADTAREELPSTMAAIR--LSGMEISDLTLELSDLSQEIADGVNK 192 (276)
Q Consensus 126 ltaLl~~AIPtL~AlkRAA~SleKL~Dtv~eELP~TLAAIR--LSGlEISDLT~eLsdLsQei~~GVrs 192 (276)
+..++++++-.++..++.-+-+++|.+.+.+.-.+-+.... -...|+.+++..+.++.+++.+..+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~n~~~~~l~~~~~~ 136 (356)
T PRK10755 68 LVMVSLTLLICFQAVRWITRPLAELQKELEARTADNLTPIAIHSSTLEIEAVTSALNQLVSRLTSTLDQ 136 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccCCccCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556777777778788877766553222221111 12246666666666666665554444
No 5
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=82.85 E-value=47 Score=32.08 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=30.6
Q ss_pred hhChhhHHHHHhhcchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 023819 156 EELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIGT 209 (276)
Q Consensus 156 eELP~TLAAIRLSGlEISDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq~~~ 209 (276)
+.|-..+..++-+..++++.+.++++-.+++..++...+..++..-+.+.++..
T Consensus 259 ~~l~~~i~~i~~~s~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eeis~ 312 (553)
T PRK15048 259 RSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTA 312 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666666666666666666666666555555544444444433
No 6
>PRK09793 methyl-accepting protein IV; Provisional
Probab=80.96 E-value=57 Score=31.76 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=25.8
Q ss_pred ChhhHHHHHhhcchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 023819 158 LPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQI 207 (276)
Q Consensus 158 LP~TLAAIRLSGlEISDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq~ 207 (276)
|-.++..++-+..+++..+.+++...+++..++...+..++...+.+.++
T Consensus 259 L~~~i~~i~~~~~~~~~~~~eia~~~~~ls~~~e~qa~~~~~~~~s~~~~ 308 (533)
T PRK09793 259 LRGTVSDVRKGSQEMHIGIAEIVAGNNDLSSRTEQQAASLAQTAASMEQL 308 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555444444444444443
No 7
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=77.96 E-value=51 Score=29.44 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=29.0
Q ss_pred chhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 023819 170 MEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQ 206 (276)
Q Consensus 170 lEISDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq 206 (276)
-|+.++...++.+.+++.+.++...+..+.+...||.
T Consensus 218 dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~~h~l~t 254 (457)
T TIGR01386 218 AELRELAQSFNAMLGRLEDAFQRLSQFSADLAHELRT 254 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 4888888888888888888887777777766666664
No 8
>PRK10815 sensor protein PhoQ; Provisional
Probab=76.97 E-value=46 Score=32.08 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=20.4
Q ss_pred chhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 023819 170 MEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQ 206 (276)
Q Consensus 170 lEISDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq 206 (276)
.|+.++...+..+.++..+-...-.+.+..+-..||.
T Consensus 243 ~El~~L~~~ln~~l~~~~~~~~~~~~~l~~isHELRT 279 (485)
T PRK10815 243 RELTSLVRNLNRLLKNERERYTKYRTTLTDLTHSLKT 279 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4667777666666555554444444444444455555
No 9
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=75.21 E-value=29 Score=29.61 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhChhhHHHHHhhcchhhhh-hHHhhhhhHHHHHHHHH
Q 023819 145 TSLSKLADTAREELPSTMAAIRLSGMEISDL-TLELSDLSQEIADGVNK 192 (276)
Q Consensus 145 ~SleKL~Dtv~eELP~TLAAIRLSGlEISDL-T~eLsdLsQei~~GVrs 192 (276)
.++++|-.|+ +.+-|+...|.-+|-|+.+- -.|+.+|.+.+.+|..=
T Consensus 34 ~~l~~L~sTl-~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~L 81 (147)
T PF05659_consen 34 SILKRLESTL-ESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKEL 81 (147)
T ss_pred hHHHHHHHHH-HHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 3455555554 46778999999999999999 88888888888888654
No 10
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=73.63 E-value=97 Score=30.52 Aligned_cols=19 Identities=11% Similarity=0.134 Sum_probs=6.8
Q ss_pred hhhhhhHHhhhhhHHHHHH
Q 023819 171 EISDLTLELSDLSQEIADG 189 (276)
Q Consensus 171 EISDLT~eLsdLsQei~~G 189 (276)
++.+-+.+++...+++.++
T Consensus 276 ~v~~~s~els~~~~~ls~~ 294 (554)
T PRK15041 276 AIYSGASEIATGNNDLSSR 294 (554)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 11
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=71.53 E-value=1.2e+02 Score=31.12 Aligned_cols=38 Identities=13% Similarity=0.158 Sum_probs=24.4
Q ss_pred cchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 023819 169 GMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQ 206 (276)
Q Consensus 169 GlEISDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq 206 (276)
.-||.+|...+....+++.+-++...+..+..-..+|+
T Consensus 461 ~DEIg~La~afn~M~~~L~~~~~~l~~~s~~lSHELrt 498 (703)
T TIGR03785 461 RDEIGDLSRSFAQMVARLRQYTHYLENMSSRLSHELRT 498 (703)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34777777777777777776666555555555555554
No 12
>PRK09835 sensor kinase CusS; Provisional
Probab=69.41 E-value=80 Score=28.73 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=17.4
Q ss_pred chhhhhhHHhhhhhHHHHHHHHHH
Q 023819 170 MEISDLTLELSDLSQEIADGVNKS 193 (276)
Q Consensus 170 lEISDLT~eLsdLsQei~~GVrss 193 (276)
-||.+|...++++.+++.+-+..-
T Consensus 239 dEl~~l~~~~n~m~~~l~~~~~~~ 262 (482)
T PRK09835 239 IELEQLVLSFNHMIERIEDVFTRQ 262 (482)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888888887777777666553
No 13
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=68.18 E-value=96 Score=30.48 Aligned_cols=74 Identities=14% Similarity=0.247 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhhChhhHHHHHhhcchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh-ccchhhhhHHHHHh
Q 023819 145 TSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQI-GTLAHQQTISIIQE 221 (276)
Q Consensus 145 ~SleKL~Dtv~eELP~TLAAIRLSGlEISDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq~-~~~A~~~t~~~lqE 221 (276)
.+++.+ +.+-+++|+.++.++-....++.+.+++++ .++-+.+.....++..+.+.||++ ..+..+++...+|.
T Consensus 253 ~~~~~~-a~~~~~~~~ll~~l~~l~~~l~~ll~~l~~--~~lL~Nle~lt~~LA~as~~l~~l~~~l~~p~~~~~L~q 327 (370)
T PLN03094 253 ALAERA-ADLMEEARPLLLKIQAMAEDLQPLLSEVRD--SGLLKEVEKLTRVAAEASEDLRRLNSSILTPENTELLRQ 327 (370)
T ss_pred HHHHHH-HHHHhhcHHHHHHHHHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 344433 444578999888888777777777777766 455566777777777888899986 44444555555554
No 14
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=66.28 E-value=43 Score=23.78 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh
Q 023819 126 FTSLVVAAIPALYAMGRAATSLSKLADTAREELP 159 (276)
Q Consensus 126 ltaLl~~AIPtL~AlkRAA~SleKL~Dtv~eELP 159 (276)
+....+...+.....+|..++.+|=.+.+.+|+.
T Consensus 32 ~llg~l~~~~~~~~~r~~~~~~~k~l~~le~e~~ 65 (68)
T PF06305_consen 32 ALLGWLLSLPSRLRLRRRIRRLRKELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455577788889999999998887777776654
No 15
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=62.18 E-value=6.2 Score=32.70 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhChhhHH
Q 023819 147 LSKLADTAREELPSTMA 163 (276)
Q Consensus 147 leKL~Dtv~eELP~TLA 163 (276)
+..|+.+=.||||++|.
T Consensus 86 I~lL~svG~e~LPgVl~ 102 (103)
T PF12955_consen 86 IGLLFSVGSEELPGVLG 102 (103)
T ss_pred HHHHHHcCCCCCCCccC
Confidence 34567777899999874
No 16
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=61.48 E-value=1e+02 Score=29.79 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=9.3
Q ss_pred hhhhhhHHhhhhhHHHHHHHHH
Q 023819 171 EISDLTLELSDLSQEIADGVNK 192 (276)
Q Consensus 171 EISDLT~eLsdLsQei~~GVrs 192 (276)
|+..|...++....++.+.++.
T Consensus 179 E~g~L~~~~n~M~~~L~~~~~~ 200 (569)
T PRK10600 179 EMAMLGTALNNMSAELAESYAV 200 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433333
No 17
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=56.89 E-value=1.2e+02 Score=27.30 Aligned_cols=38 Identities=5% Similarity=0.124 Sum_probs=22.5
Q ss_pred hcchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 023819 168 SGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIR 205 (276)
Q Consensus 168 SGlEISDLT~eLsdLsQei~~GVrssa~~V~aaeaglr 205 (276)
..-||.++...++...+++.+-+..-.+.+..+-..||
T Consensus 218 ~~dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~ 255 (461)
T PRK09470 218 GPQEFRQAGASFNQMVTALERMMTSQQRLLSDISHELR 255 (461)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhC
Confidence 34677777777777777777666554333433333333
No 18
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=55.61 E-value=38 Score=22.56 Aligned_cols=47 Identities=15% Similarity=0.297 Sum_probs=36.0
Q ss_pred hhHHHHHhhcchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 023819 160 STMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQ 206 (276)
Q Consensus 160 ~TLAAIRLSGlEISDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq 206 (276)
.++..++--+.+|+++..+=+++..+|.+.|..+..-++.+...|++
T Consensus 13 ~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k 59 (60)
T cd00193 13 ASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556667778888888888888888888888888778777777664
No 19
>PRK04654 sec-independent translocase; Provisional
Probab=53.67 E-value=1.3e+02 Score=28.03 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhChhhHHHHHhhcchhhhhhHHhhhhhHHHHHHHHHHHHHHHHH
Q 023819 138 YAMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAA 200 (276)
Q Consensus 138 ~AlkRAA~SleKL~Dtv~eELP~TLAAIRLSGlEISDLT~eLsdLsQei~~GVrssa~~V~aa 200 (276)
+.++|.-+.+.+.++-+.+|+-.-+.. .|+.+..+++.+-.+++.+++|++.+-++++
T Consensus 30 RtlGk~irk~R~~~~~vk~El~~El~~-----~ELrk~l~~~~~~i~~~~~~lk~~~~el~q~ 87 (214)
T PRK04654 30 RFAGLWVRRARMQWDSVKQELERELEA-----EELKRSLQDVQASLREAEDQLRNTQQQVEQG 87 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666544421 1333333333333444444555554444433
No 20
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=52.85 E-value=88 Score=28.21 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=11.7
Q ss_pred chhhhhhHHhhhhhHHHHH
Q 023819 170 MEISDLTLELSDLSQEIAD 188 (276)
Q Consensus 170 lEISDLT~eLsdLsQei~~ 188 (276)
-||..|++.+..+.+++.+
T Consensus 206 ~Ei~~L~~~~n~m~~~l~~ 224 (435)
T PRK09467 206 SEVRSVTRAFNQMAAGIKQ 224 (435)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666544
No 21
>PRK10604 sensor protein RstB; Provisional
Probab=50.21 E-value=1.6e+02 Score=27.45 Aligned_cols=38 Identities=13% Similarity=0.309 Sum_probs=22.3
Q ss_pred cchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 023819 169 GMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQ 206 (276)
Q Consensus 169 GlEISDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq 206 (276)
.-|+.+|...++...+++.+-+++-.+.++.+-..||.
T Consensus 188 ~~el~~L~~~fn~m~~~l~~~~~~~~~l~~~vsHeLrt 225 (433)
T PRK10604 188 GSSLERLGVAFNQMADNINALIASKKQLIDGIAHELRT 225 (433)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcC
Confidence 34677777777777766666555544444444444443
No 22
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=45.64 E-value=74 Score=27.73 Aligned_cols=78 Identities=13% Similarity=0.166 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHhhChhhHHHHHhhcchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhHHH
Q 023819 139 AMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIGTLAHQQTISI 218 (276)
Q Consensus 139 AlkRAA~SleKL~Dtv~eELP~TLAAIRLSGlEISDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq~~~~A~~~t~~~ 218 (276)
+++++-..++..++.++..|-.|-+.||= +.-|+.....+|...+-.||.+..+=++.+...|..-..-+..+-..+
T Consensus 53 eik~~n~~~~e~l~~~~~kl~et~~~L~k---~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~~~~~~~e~l~~~ 129 (155)
T PF07464_consen 53 EIKDANPEAEEALKQLKTKLEETAEKLRK---ANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVSENSEGANEKLQPA 129 (155)
T ss_dssp HHTT-SSTHHHHHHHHHHHHHHHHHGGGG----SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS---SS-GGGHHH
T ss_pred HHHhcChhHHHHHHHHHHHHHHHHHHHHh---cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 45555667777788888888888887776 466777777788888888998887777766666666544444333333
Q ss_pred H
Q 023819 219 I 219 (276)
Q Consensus 219 l 219 (276)
+
T Consensus 130 ~ 130 (155)
T PF07464_consen 130 I 130 (155)
T ss_dssp H
T ss_pred H
Confidence 3
No 23
>TIGR02105 III_needle type III secretion apparatus needle protein. Type III secretion systems translocate proteins, usually virulence factors, out across both inner and outer membranes of certain Gram-negative bacteria and further across the plasma membrane and into the cytoplasm of the host cell. This protein, termed YscF in Yersinia, and EscF, PscF, EprI, etc. in other systems, forms the needle of the injection apparatus.
Probab=45.10 E-value=52 Score=25.56 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=42.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhHHHHHhhhcCCcccchhHHHhHHHHhhhhhhhHHHHHHHHhc
Q 023819 178 ELSDLSQEIADGVNKSAQAVQAAEAGIRQIGTLAHQQTISIIQERASLPIISLQPVVAGAAKKTSHAVGQATKTLMNMIS 257 (276)
Q Consensus 178 eLsdLsQei~~GVrssa~~V~aaeaglrq~~~~A~~~t~~~lqErA~l~~~s~~PvVa~AA~kt~~~v~~a~~~~~n~is 257 (276)
+|+++++.+.+|++..++.|+.+-..+....+ ...|++=.+.+..|+ +.+....++..+-|-++.-|.
T Consensus 2 ~l~~i~~~l~~~~~~~~~~l~~a~~~l~~~~n-----P~~La~~Q~~~~qYs-------~~~n~qSs~iK~iKD~~~~Ii 69 (72)
T TIGR02105 2 DISAIAQQLKKPADDANQAVNDSLAALDLPND-----PELMAELQFALNQYS-------AYYNIESTIVKMIKDLDSGIL 69 (72)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC-----HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 35566677779999999999988777622123 235666556666666 455555556555555555443
No 24
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=44.80 E-value=2.3e+02 Score=25.30 Aligned_cols=52 Identities=23% Similarity=0.125 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHhhcchhhhhhHHhhhhh
Q 023819 132 AAIPALYAMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLS 183 (276)
Q Consensus 132 ~AIPtL~AlkRAA~SleKL~Dtv~eELP~TLAAIRLSGlEISDLT~eLsdLs 183 (276)
.+.-+.....+++....+..|...+|=..-.+.+|.--.|+..|......+.
T Consensus 25 ~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~ 76 (251)
T PF11932_consen 25 QAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLE 76 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666677777788888888888888888877777777766555333
No 25
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=44.07 E-value=2.7e+02 Score=26.26 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=11.9
Q ss_pred chhhhhhHHhhhhhHHHHHHHHH
Q 023819 170 MEISDLTLELSDLSQEIADGVNK 192 (276)
Q Consensus 170 lEISDLT~eLsdLsQei~~GVrs 192 (276)
-|+.++...+....+.+.+-++.
T Consensus 206 dE~g~l~~~~~~m~~~l~~~~~~ 228 (565)
T PRK10935 206 NELGLLAKAFNQMSSELHKLYRS 228 (565)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555444443
No 26
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=42.37 E-value=2.2e+02 Score=24.34 Aligned_cols=76 Identities=16% Similarity=0.211 Sum_probs=41.2
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHH-hhcchhhhhhHHhhhh
Q 023819 104 KLSLSDQAFFLLAFIACTTSVAFTSLVVAAIPALYAMGRAATSLSKLADTAREELPSTMAAIR-LSGMEISDLTLELSDL 182 (276)
Q Consensus 104 ~l~l~d~~f~lLs~~~~vvavAltaLl~~AIPtL~AlkRAA~SleKL~Dtv~eELP~TLAAIR-LSGlEISDLT~eLsdL 182 (276)
+.-..++-+|+-|++++ +...|..+..+-+--...++-.+.+..+...+-..-+ ....+-.....|+.++
T Consensus 96 ~~fraQRN~YIsGf~Lf---------L~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~l 166 (192)
T PF05529_consen 96 KKFRAQRNMYISGFALF---------LSLVIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKL 166 (192)
T ss_pred HHHHHHHhHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHH
Confidence 33355666777655554 3334555555555555555555555555444433222 2344556667777777
Q ss_pred hHHHHH
Q 023819 183 SQEIAD 188 (276)
Q Consensus 183 sQei~~ 188 (276)
.+|+.+
T Consensus 167 k~el~~ 172 (192)
T PF05529_consen 167 KKELEK 172 (192)
T ss_pred HHHHHH
Confidence 777775
No 27
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=42.16 E-value=1.1e+02 Score=29.65 Aligned_cols=84 Identities=18% Similarity=0.260 Sum_probs=51.7
Q ss_pred ChhhHHHHHhhc-------chhhhhhHHhhhhhHHHHH----HHHHHHHHHHH-HHHhhhhhccchhh---hhHHHHHhh
Q 023819 158 LPSTMAAIRLSG-------MEISDLTLELSDLSQEIAD----GVNKSAQAVQA-AEAGIRQIGTLAHQ---QTISIIQER 222 (276)
Q Consensus 158 LP~TLAAIRLSG-------lEISDLT~eLsdLsQei~~----GVrssa~~V~a-aeaglrq~~~~A~~---~t~~~lqEr 222 (276)
+|+.-++....| -.|.|.+.--+++.||+.+ |.|+..++|++ .-+.+++.....++ ...+++||-
T Consensus 12 ~~~~~~~~~~~g~~~~~~~~~i~~v~~~y~~~~~d~~~~~~eg~r~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~al~D~ 91 (299)
T PF05884_consen 12 PAADPAAAKNAGCTAGEQDASIRDVTRTYSNYGQDLQQYYAEGLRLRPEAVQQETPNQLQSTASQFKPQSNEIVNALQDT 91 (299)
T ss_pred CCcChHHHhccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 344444445555 3467777778888888776 88888888887 66677777766664 345677773
Q ss_pred hcCCcccchhHHHhHHHHh
Q 023819 223 ASLPIISLQPVVAGAAKKT 241 (276)
Q Consensus 223 A~l~~~s~~PvVa~AA~kt 241 (276)
-.=.-++..||+.==+|.+
T Consensus 92 s~P~~~~~~~i~~tF~~ss 110 (299)
T PF05884_consen 92 SPPEKLSTSSIVETFSWSS 110 (299)
T ss_pred CCCcCCCchhHHHHHHHHH
Confidence 3111223455555445444
No 28
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=42.16 E-value=2.1e+02 Score=25.18 Aligned_cols=82 Identities=15% Similarity=0.227 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHhhcchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccchhhh
Q 023819 135 PALYAMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIGTLAHQQ 214 (276)
Q Consensus 135 PtL~AlkRAA~SleKL~Dtv~eELP~TLAAIRLSGlEISDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq~~~~A~~~ 214 (276)
|+|..|-.+|...++-+.++..---.-..|+- .|.|...+... +.||++++-....+-+..+..++.+.......
T Consensus 10 P~~e~lv~~~~kY~~al~~~~~a~~~f~dal~----ki~~~A~~s~~-s~~lG~~L~~~s~~~r~i~~~~~~~~~~~~~~ 84 (219)
T PF08397_consen 10 PAWENLVSLGKKYQKALRAMSQAAAAFFDALQ----KIGDMASNSRG-SKELGDALMQISEVHRRIENELEEVFKAFHSE 84 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhccCCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665555544443322111122221 13333333333 66677777777777777777777766655544
Q ss_pred hHHHHHh
Q 023819 215 TISIIQE 221 (276)
Q Consensus 215 t~~~lqE 221 (276)
.+.-+++
T Consensus 85 li~pLe~ 91 (219)
T PF08397_consen 85 LIQPLEK 91 (219)
T ss_dssp THHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 29
>PLN02870 Probable galacturonosyltransferase
Probab=41.84 E-value=79 Score=32.86 Aligned_cols=29 Identities=7% Similarity=0.036 Sum_probs=15.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 023819 178 ELSDLSQEIADGVNKSAQAVQAAEAGIRQ 206 (276)
Q Consensus 178 eLsdLsQei~~GVrssa~~V~aaeaglrq 206 (276)
+..+...+...-+++...++++.|.+++.
T Consensus 123 ~~~~~~~d~~~~~~kl~~~~~~~e~~~~~ 151 (533)
T PLN02870 123 DMKNNHYDAKTFAFVLRAMMEKFERELRE 151 (533)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555566666655554
No 30
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=41.27 E-value=1.8e+02 Score=22.94 Aligned_cols=28 Identities=36% Similarity=0.423 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhChhhHHHH
Q 023819 138 YAMGRAATSLSKLADTAREELPSTMAAI 165 (276)
Q Consensus 138 ~AlkRAA~SleKL~Dtv~eELP~TLAAI 165 (276)
.|+.++...++.|.+.+..++++.-++|
T Consensus 42 ~Al~~~~~eL~~l~~~~~~~~~~~~a~I 69 (123)
T PF05524_consen 42 QALEKAREELEQLAERAESKLGEEEAAI 69 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHSSCTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 4667777888888888877776655544
No 31
>PRK10337 sensor protein QseC; Provisional
Probab=39.29 E-value=3e+02 Score=25.05 Aligned_cols=68 Identities=21% Similarity=0.238 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHhhChhhHHHHHhh--cchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 023819 139 AMGRAATSLSKLADTAREELPSTMAAIRLS--GMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQ 206 (276)
Q Consensus 139 AlkRAA~SleKL~Dtv~eELP~TLAAIRLS--GlEISDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq 206 (276)
-++|.-+.+.++.+.+++--++....+... .-||..+.+.+..+.+++.+-+..-.+.+..+-..||.
T Consensus 181 ~~~~~~~pl~~l~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~~~n~~~~~l~~~~~~~~~~~~~~ahelrt 250 (449)
T PRK10337 181 LLGRELAPLKKLALALRMRDPDSETPLNATGVPSEVRPLVEALNQLFARTHAMMVRERRFTSDAAHELRS 250 (449)
T ss_pred HHHhhhchHHHHHHHHHhhCcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455666666666666655433322211111 35666777777666666665555443434444444443
No 32
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=39.16 E-value=3.1e+02 Score=25.19 Aligned_cols=94 Identities=13% Similarity=0.186 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChh---hHHHHHhhcchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 023819 127 TSLVVAAIPALYAMGRAATSLSKLADTAREELPS---TMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAG 203 (276)
Q Consensus 127 taLl~~AIPtL~AlkRAA~SleKL~Dtv~eELP~---TLAAIRLSGlEISDLT~eLsdLsQei~~GVrssa~~V~aaeag 203 (276)
..++-..=|.+-++.+.-+.+.++++++.+--|+ ++..+..+...|.|--++|..+-..+..-.+...+.+..-+..
T Consensus 41 ~~~l~~ln~~~~~l~~~l~~l~~v~~~~a~aapdL~~~l~~~~~~s~tL~~~~~~L~~lL~~~~~~a~~~~~~l~~n~~~ 120 (267)
T PF11887_consen 41 NTLLATLNPRLPQLREDLRNLADVADTYADAAPDLLDALDNLTTTSRTLVDQRQQLDALLLSATGLADTGTDFLADNRDN 120 (267)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3344444444455555555555666655555444 4455566677777777777777777776666667777766666
Q ss_pred hhhhccchhhhhHHHHHh
Q 023819 204 IRQIGTLAHQQTISIIQE 221 (276)
Q Consensus 204 lrq~~~~A~~~t~~~lqE 221 (276)
|.+..... ..|...+.+
T Consensus 121 L~~~~~~L-~p~~~lL~~ 137 (267)
T PF11887_consen 121 LIRALDDL-RPTTDLLAK 137 (267)
T ss_pred HHHHHHHH-HHHHHHHHH
Confidence 65544433 234455555
No 33
>PRK04654 sec-independent translocase; Provisional
Probab=37.65 E-value=3.5e+02 Score=25.38 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhhC
Q 023819 139 AMGRAATSLSKLADTAREEL 158 (276)
Q Consensus 139 AlkRAA~SleKL~Dtv~eEL 158 (276)
.|=++++.+-+.+..+|+.+
T Consensus 24 rLPe~aRtlGk~irk~R~~~ 43 (214)
T PRK04654 24 RLPKAARFAGLWVRRARMQW 43 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666543
No 34
>COG4965 TadB Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
Probab=37.56 E-value=4e+02 Score=25.97 Aligned_cols=56 Identities=27% Similarity=0.485 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhChhhH--------------HHHHhhcchhhh-hhHHhhhhhHHHHHHHH
Q 023819 132 AAIPALYAMGRAATSLSKLADTAREELPSTM--------------AAIRLSGMEISD-LTLELSDLSQEIADGVN 191 (276)
Q Consensus 132 ~AIPtL~AlkRAA~SleKL~Dtv~eELP~TL--------------AAIRLSGlEISD-LT~eLsdLsQei~~GVr 191 (276)
+.+|-+.=-.+.++..+|+. +++|+-+ .++++.|.|..| +-.|+.-..+++.-|+-
T Consensus 116 ~llp~~~~~~~~~rr~krf~----~qlP~aLdlivr~l~aG~~l~dAl~~~~~e~~~Pl~~ef~~i~~~~~~G~~ 186 (309)
T COG4965 116 ALLPRLVLRSRRARRLKRFG----QQLPEALDLIVRALRAGAPLPDALRLAAKETPEPLGTEFTLITDRQQLGID 186 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHhhCCCCHHHHHHHHHhhCCCchHHHHHHHHHHHHcCCC
Confidence 34455443344444444443 5555554 677777777654 44455545555544443
No 35
>PLN02867 Probable galacturonosyltransferase
Probab=37.30 E-value=1.8e+02 Score=30.28 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=25.8
Q ss_pred hhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 023819 173 SDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIG 208 (276)
Q Consensus 173 SDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq~~ 208 (276)
.++..|.+....|...-+++...+++..|.++|.+.
T Consensus 123 ~~~~~~~~~~~~d~~~~~~kl~am~~~~e~~~~~~~ 158 (535)
T PLN02867 123 NDLVKEMTSNRQDIKAFAFRTKAMLLKMERKVQSAR 158 (535)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777788888888887776543
No 36
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=36.77 E-value=1.1e+02 Score=22.66 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023819 114 LLAFIACTTSVAFTSLVV 131 (276)
Q Consensus 114 lLs~~~~vvavAltaLl~ 131 (276)
++++++.+++.+.+.+|+
T Consensus 2 ~~g~l~Ga~~Ga~~glL~ 19 (74)
T PF12732_consen 2 LLGFLAGAAAGAAAGLLF 19 (74)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 445665555444444443
No 37
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=36.72 E-value=2.2e+02 Score=26.10 Aligned_cols=56 Identities=18% Similarity=0.369 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHhhChhhHHHHHhhcchhhhhhHHhhhhhHHHHHHHHHHHHHHH
Q 023819 139 AMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQ 198 (276)
Q Consensus 139 AlkRAA~SleKL~Dtv~eELP~TLAAIRLSGlEISDLT~eLsdLsQei~~GVrssa~~V~ 198 (276)
.++++-..+.++++.+...+|..-+.|| .+.++++-+++-..+|.+.+.....+.+
T Consensus 32 ~lg~~l~~l~~~l~~ln~~~~~l~~~l~----~l~~v~~~~a~aapdL~~~l~~~~~~s~ 87 (267)
T PF11887_consen 32 QLGETLDDLNTLLATLNPRLPQLREDLR----NLADVADTYADAAPDLLDALDNLTTTSR 87 (267)
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHH----HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 6777888888888888888887666665 3456666666666666666666544333
No 38
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=36.65 E-value=2.4e+02 Score=32.89 Aligned_cols=50 Identities=20% Similarity=0.325 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhC------hhhHHH--HHhhcchhhhhhHHhhhhhHHHHHHHHHHH
Q 023819 145 TSLSKLADTAREEL------PSTMAA--IRLSGMEISDLTLELSDLSQEIADGVNKSA 194 (276)
Q Consensus 145 ~SleKL~Dtv~eEL------P~TLAA--IRLSGlEISDLT~eLsdLsQei~~GVrssa 194 (276)
+.+++|+..+++-| |+++.. =++-+|||.--.+++.+|..+|.+-|.+..
T Consensus 1471 ~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~ 1528 (1758)
T KOG0994|consen 1471 RELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLP 1528 (1758)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcc
Confidence 34444555554433 444432 356678888778888888888888888753
No 39
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=34.22 E-value=3.7e+02 Score=25.64 Aligned_cols=80 Identities=23% Similarity=0.344 Sum_probs=51.3
Q ss_pred HHHHHHhhChhhHHHHHhhcchhhhhhHHhhhhhHHHHHHHHHHHH---HHHHHHHhhhhhccchh------hhhHHHHH
Q 023819 150 LADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQ---AVQAAEAGIRQIGTLAH------QQTISIIQ 220 (276)
Q Consensus 150 L~Dtv~eELP~TLAAIRLSGlEISDLT~eLsdLsQei~~GVrssa~---~V~aaeaglrq~~~~A~------~~t~~~lq 220 (276)
.++.++++|-.+...+..---++.++.+++.++..+|.++..+-.. .++.|+.-+.+..+... ......||
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le 284 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQ 284 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 5566677777777777777778888888888888888877766433 33455554444333333 34455666
Q ss_pred hhhcCCccc
Q 023819 221 ERASLPIIS 229 (276)
Q Consensus 221 ErA~l~~~s 229 (276)
...++.+.+
T Consensus 285 ~l~g~~~~~ 293 (312)
T smart00787 285 SLTGWKITK 293 (312)
T ss_pred HHhCCeeEe
Confidence 666666655
No 40
>PRK11637 AmiB activator; Provisional
Probab=33.70 E-value=4.4e+02 Score=25.32 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=8.3
Q ss_pred hChhhHHHHHhhcchhhhhhHHh
Q 023819 157 ELPSTMAAIRLSGMEISDLTLEL 179 (276)
Q Consensus 157 ELP~TLAAIRLSGlEISDLT~eL 179 (276)
++-.+...++-.-.+|.++..++
T Consensus 69 ~~~~~~~~l~~l~~qi~~~~~~i 91 (428)
T PRK11637 69 QRASLLAQLKKQEEAISQASRKL 91 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 41
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=32.46 E-value=1.9e+02 Score=25.78 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023819 128 SLVVAAIPALYAMGRAATSLSKLADTARE 156 (276)
Q Consensus 128 aLl~~AIPtL~AlkRAA~SleKL~Dtv~e 156 (276)
+=+++|||++..-.+-.+..+++.+-+.+
T Consensus 172 ~GL~vAIPAvi~yn~l~r~~~~~~~~~e~ 200 (216)
T COG0811 172 IGLFVAIPAVVAYNVLRRKVEELLAKLED 200 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999988888887777755543
No 42
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=32.38 E-value=3.6e+02 Score=23.89 Aligned_cols=110 Identities=18% Similarity=0.188 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhH--------------HHHHhhcchhhhhhHHh
Q 023819 114 LLAFIACTTSVAFTSLVVAAIPALYAMGRAATSLSKLADTAREELPSTM--------------AAIRLSGMEISDLTLEL 179 (276)
Q Consensus 114 lLs~~~~vvavAltaLl~~AIPtL~AlkRAA~SleKL~Dtv~eELP~TL--------------AAIRLSGlEISDLT~eL 179 (276)
++++++.+..+-+...+=..=|+|-+..+.-.-+++=++.+-.|=-+-| +.|--.--++.|+-+.|
T Consensus 10 iiAiAf~vL~I~li~tlkkv~~tldevakt~~~l~~qv~gi~~eT~~Ll~K~N~L~eDvq~Kv~tld~vf~aV~dl~~SV 89 (139)
T COG4768 10 IIAIAFLVLVIYLIITLKKVSKTLDEVAKTLKGLTSQVDGITHETEELLHKTNTLAEDVQGKVATLDPVFDAVKDLGQSV 89 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHH
Confidence 4566666677777788888889999999988888776666554433333 34444444455555555
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhcc--chhhhhHHHHHhhhc
Q 023819 180 SDLSQEIADGVNKSAQAVQAAEAGIRQIGT--LAHQQTISIIQERAS 224 (276)
Q Consensus 180 sdLsQei~~GVrssa~~V~aaeaglrq~~~--~A~~~t~~~lqErA~ 224 (276)
+++-|-...-.++.++.+..-+..+.|... .| ..-...+++|+.
T Consensus 90 ~~ln~s~r~~~~~~t~~~~~~~~~iaq~v~~~~A-~~~~~K~~~~~~ 135 (139)
T COG4768 90 SDLNQSVRHLATRATNAVEKNEKKIAQAVVSNVA-SKFFKKKKKRAK 135 (139)
T ss_pred HHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHH-HHHHHHHhHhhh
Confidence 555554444444455555555555555333 22 233344555543
No 43
>PRK00708 sec-independent translocase; Provisional
Probab=32.22 E-value=4.1e+02 Score=24.58 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhChhhH
Q 023819 138 YAMGRAATSLSKLADTAREELPSTM 162 (276)
Q Consensus 138 ~AlkRAA~SleKL~Dtv~eELP~TL 162 (276)
..++|.-+.+.+.++-+++++-+.+
T Consensus 30 R~lGk~v~k~R~~a~e~r~~~~e~~ 54 (209)
T PRK00708 30 RAFGKMTARMRKMAGEFRRQFDEAL 54 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666666654433
No 44
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=32.16 E-value=5.4e+02 Score=25.92 Aligned_cols=19 Identities=11% Similarity=0.191 Sum_probs=10.2
Q ss_pred chhhhhhHHhhhhhHHHHH
Q 023819 170 MEISDLTLELSDLSQEIAD 188 (276)
Q Consensus 170 lEISDLT~eLsdLsQei~~ 188 (276)
-|+..|...++.+.+++.+
T Consensus 231 dEi~~L~~~~n~m~~~l~~ 249 (919)
T PRK11107 231 GELDMLKNGINAMAMSLSA 249 (919)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 3566666655555544443
No 45
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=31.77 E-value=2.8e+02 Score=23.20 Aligned_cols=64 Identities=20% Similarity=0.281 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHHHhhcchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 023819 141 GRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIG 208 (276)
Q Consensus 141 kRAA~SleKL~Dtv~eELP~TLAAIRLSGlEISDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq~~ 208 (276)
.+.++-++.|. ..||+-=.+=..-=..|.+|-.|+....+|+.+-|+.....+...+.-|+.++
T Consensus 79 i~kakqIe~LI----dsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~ia 142 (144)
T PF11221_consen 79 IRKAKQIEYLI----DSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIREIA 142 (144)
T ss_dssp HHHHHHHHHHH----HHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHH----HhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555 55676221111222457788888888888888888888888888888777654
No 46
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=31.76 E-value=1.7e+02 Score=20.29 Aligned_cols=50 Identities=12% Similarity=0.296 Sum_probs=34.4
Q ss_pred ChhhHHHHHhhcchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 023819 158 LPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQI 207 (276)
Q Consensus 158 LP~TLAAIRLSGlEISDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq~ 207 (276)
|=.++..++-.+.+|++..++=+++..+|.+-|..+..-++.+-..|.++
T Consensus 9 l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka 58 (63)
T PF05739_consen 9 LEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKA 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666677777777777777777777777777766666666555543
No 47
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=30.83 E-value=9.1 Score=26.40 Aligned_cols=20 Identities=15% Similarity=0.307 Sum_probs=14.3
Q ss_pred hcchhhhhhHHhhhhhHHHH
Q 023819 168 SGMEISDLTLELSDLSQEIA 187 (276)
Q Consensus 168 SGlEISDLT~eLsdLsQei~ 187 (276)
..-||.++.+.++...+++.
T Consensus 50 ~~dEi~~l~~~~n~m~~~l~ 69 (70)
T PF00672_consen 50 GPDEIGQLARAFNQMADRLR 69 (70)
T ss_dssp SSSCHCCCHHHCCCHHHHHC
T ss_pred CccHHHHHHHHHHHHHHHhc
Confidence 66778888877777766653
No 48
>PF10824 DUF2580: Protein of unknown function (DUF2580); InterPro: IPR022536 This entry represents the ESX-1 secretion-associated protein EspC protein family.
Probab=30.20 E-value=2.1e+02 Score=20.61 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhhChhh
Q 023819 139 AMGRAATSLSKLADTAREELPST 161 (276)
Q Consensus 139 AlkRAA~SleKL~Dtv~eELP~T 161 (276)
.|++.|..+..+++.+.+-.+..
T Consensus 11 ~Lr~~A~~~~~~A~~~~~~~~~~ 33 (100)
T PF10824_consen 11 ALRQAAAQLDDIADQLAAAASAV 33 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677777777777776644443
No 49
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=30.14 E-value=3.1e+02 Score=24.52 Aligned_cols=7 Identities=14% Similarity=0.098 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 023819 141 GRAATSL 147 (276)
Q Consensus 141 kRAA~Sl 147 (276)
++....+
T Consensus 193 ~~l~~~~ 199 (457)
T TIGR01386 193 RRLSAVA 199 (457)
T ss_pred HHHHHHH
Confidence 3333333
No 50
>PF07465 PsaM: Photosystem I protein M (PsaM); InterPro: IPR010010 Members of this protein family are PsaM, which is subunit XII of the photosystem I reaction centre. PsaM forms part of the photosystem I complex and its binding is stabilised by PsaI []. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen.; GO: 0015979 photosynthesis, 0009522 photosystem I, 0030094 plasma membrane-derived photosystem I; PDB: 3PCQ_M 1JB0_M.
Probab=30.10 E-value=66 Score=21.59 Aligned_cols=16 Identities=38% Similarity=0.642 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 023819 126 FTSLVVAAIPALYAMG 141 (276)
Q Consensus 126 ltaLl~~AIPtL~Alk 141 (276)
+.+|+++.+|.++|+|
T Consensus 7 ~iAL~~Al~~~iLA~r 22 (29)
T PF07465_consen 7 FIALVIALITGILALR 22 (29)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566677777777765
No 51
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=29.89 E-value=1.5e+02 Score=24.88 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=22.7
Q ss_pred hhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhHHHHH
Q 023819 173 SDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIGTLAHQQTISIIQ 220 (276)
Q Consensus 173 SDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq~~~~A~~~t~~~lq 220 (276)
.++..||.+|..++.+-.++++..-..--..||.=...+..++...++
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~ 58 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLG 58 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666665444333333344333333333333333
No 52
>PF15195 TMEM210: TMEM210 family
Probab=29.86 E-value=32 Score=29.19 Aligned_cols=36 Identities=36% Similarity=0.496 Sum_probs=26.6
Q ss_pred ccCCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023819 104 KLSLSDQAFFL-LAFIACTTSVAFTSLVVAAIPALYA 139 (276)
Q Consensus 104 ~l~l~d~~f~l-Ls~~~~vvavAltaLl~~AIPtL~A 139 (276)
.|||+-.++.. +.+.+.+-|.+|++|+++||-.++|
T Consensus 6 sLGLSREALIALlVVLAgv~ascfcalvivaigv~ra 42 (116)
T PF15195_consen 6 SLGLSREALIALLVVLAGVSASCFCALVIVAIGVLRA 42 (116)
T ss_pred ecccCHHHHHHHHHHHhccchhHHHHHHHhhheeeec
Confidence 36777666554 5566677788899999999987765
No 53
>PF14341 PilX_N: PilX N-terminal
Probab=29.00 E-value=94 Score=22.00 Aligned_cols=22 Identities=45% Similarity=0.566 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 023819 184 QEIADGVNKSAQAVQAAEAGIR 205 (276)
Q Consensus 184 Qei~~GVrssa~~V~aaeaglr 205 (276)
+.++..-+...++-++||+|++
T Consensus 30 ~~~a~n~~~~~~A~~aAEagl~ 51 (51)
T PF14341_consen 30 ERMAGNQRDSQQAFQAAEAGLE 51 (51)
T ss_pred HHHHHhHHHHHHHHHHHHhhcC
Confidence 4566777788888999999985
No 54
>CHL00190 psaM photosystem I subunit XII; Provisional
Probab=28.03 E-value=72 Score=21.59 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 023819 126 FTSLVVAAIPALYAMG 141 (276)
Q Consensus 126 ltaLl~~AIPtL~Alk 141 (276)
+.+++++.+|.++|+|
T Consensus 8 ~iAL~~Al~~~iLA~r 23 (30)
T CHL00190 8 FIALFLALTTGILAIR 23 (30)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666777777765
No 55
>PF09392 MxiH: Type III secretion needle MxiH like; InterPro: IPR021123 This entry represents bacterial type III secretion system needle-like proteins. Type III secretion systems are essential virulence determinants for many Gram-negative bacterial pathogens, acting to translocate proteins, usually virulence factors, out across both inner and outer membranes of bacteria and into the cytoplasm of the host cell. These proteins include: Needle proteins, including MxiH, YscF, EscF, PscF, EprI, that form the needle of the injection apparatus. For instance, MxiH is an extracellular alpha helical needle that is required for translocation of effector proteins into host cells, and once inside, the effector proteins subvert normal cell function to aid infection []. YscI (Yop proteins translocation protein I) in Yersinia and HrpB (hypersensitivity response and pathogenicity protein B) in plant pathogens such as Pseudomonas syringae. YscI is involved in the translocation of Yop proteins across the bacterial membrane or in the specific control of this function. ; GO: 0009405 pathogenesis, 0015031 protein transport; PDB: 2UWJ_F 2CA5_B 3J0R_A 2P58_B 3ZQB_B 3ZQE_B 2G0U_A 2LPZ_S 2JOW_A 2X9C_A ....
Probab=27.92 E-value=1.3e+02 Score=23.08 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=22.0
Q ss_pred hhHHHHHhhhcCCcccchhHHHhHHHHhhhhhhhHHHHHHHH
Q 023819 214 QTISIIQERASLPIISLQPVVAGAAKKTSHAVGQATKTLMNM 255 (276)
Q Consensus 214 ~t~~~lqErA~l~~~s~~PvVa~AA~kt~~~v~~a~~~~~n~ 255 (276)
.+..|++=...+--|+ +.....-|+-+.+.++-.+|+||
T Consensus 52 ~P~~ll~~Q~~l~qys---l~~~l~sk~v~~~~q~i~~L~km 90 (90)
T PF09392_consen 52 DPEDLLQLQFALSQYS---LQVNLQSKLVKKMKQSIETLVKM 90 (90)
T ss_dssp -HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcC
Confidence 4456666666665555 34444445555556666777765
No 56
>PF02203 TarH: Tar ligand binding domain homologue; InterPro: IPR003122 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors.; GO: 0004888 transmembrane signaling receptor activity, 0006935 chemotaxis, 0007165 signal transduction, 0016020 membrane; PDB: 2ASR_A 3ATP_A 2D4U_A 2LIG_A 1VLS_A 1LIH_A 1WAT_B 1VLT_B 1WAS_A 1JMW_A.
Probab=27.84 E-value=1e+02 Score=24.45 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhh
Q 023819 127 TSLVVAAIPALYAMGRAATSLSKLADTAREELPST 161 (276)
Q Consensus 127 taLl~~AIPtL~AlkRAA~SleKL~Dtv~eELP~T 161 (276)
..+++++.=.++.+.++..+++.+. ...++.+
T Consensus 20 ~ll~~~~~~~~~~l~~~~~~l~~~~---~~~~~~~ 51 (171)
T PF02203_consen 20 LLLLVVGGLGFWGLRSSNESLEEIY---QQSLQQV 51 (171)
T ss_dssp -----HHCCCCCCHHHHHHHH-HHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3444455556677777777776555 3444444
No 57
>TIGR03053 PS_I_psaM photosystem I reaction center subunit XII. Members of this protein family are PsaM, which is subunit XII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen. The seed alignment for this model includes sequences from Pfam model pfam07465 and additional sequences, as from Prochlorococcus.
Probab=27.63 E-value=75 Score=21.24 Aligned_cols=16 Identities=38% Similarity=0.646 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 023819 126 FTSLVVAAIPALYAMG 141 (276)
Q Consensus 126 ltaLl~~AIPtL~Alk 141 (276)
+.+|+++.+|.++|+|
T Consensus 7 ~iaL~~Al~~~iLA~r 22 (29)
T TIGR03053 7 FIALVIALIAGILALR 22 (29)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566677777777765
No 58
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=27.51 E-value=1.9e+02 Score=19.33 Aligned_cols=44 Identities=11% Similarity=0.211 Sum_probs=28.3
Q ss_pred HHHHhhcchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 023819 163 AAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQ 206 (276)
Q Consensus 163 AAIRLSGlEISDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq 206 (276)
..++=.|.+|+.+..+=++...+|.+++..+..-++.+...+++
T Consensus 22 ~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~ 65 (66)
T smart00397 22 GELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 34445566777776666666777777777776666666655543
No 59
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.71 E-value=2.5e+02 Score=21.12 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023819 126 FTSLVVAAIPALYAMGRAATSLSKLADT 153 (276)
Q Consensus 126 ltaLl~~AIPtL~AlkRAA~SleKL~Dt 153 (276)
+..++.+++|.+....+.++..++....
T Consensus 22 igil~~~~~p~~~~~~~~~~~~~~~~~~ 49 (149)
T COG2165 22 IGILAALALPSLQGSIDKAKRLEAAQQA 49 (149)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 4556677788888888877655555433
No 60
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=24.93 E-value=4.2e+02 Score=22.90 Aligned_cols=22 Identities=9% Similarity=0.076 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023819 130 VVAAIPALYAMGRAATSLSKLA 151 (276)
Q Consensus 130 l~~AIPtL~AlkRAA~SleKL~ 151 (276)
++..|=....++|.-+.-.+++
T Consensus 15 li~~~~~~~kl~kl~r~Y~~lm 36 (151)
T PF14584_consen 15 LILIIILNIKLRKLKRRYDALM 36 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444455555555666665
No 61
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=24.50 E-value=6.6e+02 Score=24.40 Aligned_cols=39 Identities=10% Similarity=0.267 Sum_probs=21.1
Q ss_pred HHhhcchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 023819 165 IRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAG 203 (276)
Q Consensus 165 IRLSGlEISDLT~eLsdLsQei~~GVrssa~~V~aaeag 203 (276)
+..-+-.++...++|.++.+++.+.|..-++.++++-+.
T Consensus 180 ~g~L~~~~n~M~~~L~~~~~~l~~~~~~~t~~l~~~~~~ 218 (569)
T PRK10600 180 MAMLGTALNNMSAELAESYAVLEQRVQEKTAGLEQKNQI 218 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556666666666666666555555544443
No 62
>PRK11878 psaM photosystem I reaction center subunit XII; Reviewed
Probab=23.65 E-value=94 Score=21.54 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 023819 126 FTSLVVAAIPALYAMG 141 (276)
Q Consensus 126 ltaLl~~AIPtL~Alk 141 (276)
+.+|+++.+|.++|+|
T Consensus 11 ~iaL~~Al~~giLA~R 26 (34)
T PRK11878 11 FVALVVALHAGVLALR 26 (34)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666777777764
No 63
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=23.56 E-value=5.3e+02 Score=23.59 Aligned_cols=19 Identities=16% Similarity=0.480 Sum_probs=10.4
Q ss_pred chhhhhhHHhhhhhHHHHH
Q 023819 170 MEISDLTLELSDLSQEIAD 188 (276)
Q Consensus 170 lEISDLT~eLsdLsQei~~ 188 (276)
-|+..+...+.++.+.+.+
T Consensus 241 dEig~l~~~~~~~~~~l~~ 259 (607)
T PRK11360 241 GELGEISQAINNLAQALRE 259 (607)
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 3566666655555555443
No 64
>PRK10574 putative major pilin subunit; Provisional
Probab=23.47 E-value=3e+02 Score=23.52 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023819 126 FTSLVVAAIPALYAMGRAATSLSKLAD 152 (276)
Q Consensus 126 ltaLl~~AIPtL~AlkRAA~SleKL~D 152 (276)
+..|+.+++|.++...+-++..+.+.+
T Consensus 19 igILaaiaiP~~~~~~~~a~~~~~~~~ 45 (146)
T PRK10574 19 IAILSAIGIPAYQNYLQKAALTDMLQT 45 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667899999988776665555544
No 65
>PLN02659 Probable galacturonosyltransferase
Probab=23.19 E-value=1.4e+02 Score=31.16 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=28.3
Q ss_pred hhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 023819 172 ISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQ 206 (276)
Q Consensus 172 ISDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq 206 (276)
+.++..|.+....+...-+++..+++++.|.+++-
T Consensus 118 ~~~~~~~~~~~~~d~~~~~~klr~~l~~~E~~~~~ 152 (534)
T PLN02659 118 LEEFMDEVKNSRSDARAFALKLREMVTLLEQRTRT 152 (534)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888888888888888887774
No 66
>PRK10983 putative inner membrane protein; Provisional
Probab=22.93 E-value=6.8e+02 Score=23.99 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hChhhHHHHHhhcc
Q 023819 126 FTSLVVAAIPALYAMGRAATSLSKLADTARE-----ELPSTMAAIRLSGM 170 (276)
Q Consensus 126 ltaLl~~AIPtL~AlkRAA~SleKL~Dtv~e-----ELP~TLAAIRLSGl 170 (276)
+..+++..+|........+...+.+.+.+++ ..|+.+..+.+.|.
T Consensus 72 l~~~llv~iPl~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~lp~ig~ 121 (368)
T PRK10983 72 LLLVLLFVIPIALLVNSLVDNSGPLIKWASSGDMTLPDLAWLNSIPLIGA 121 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHhCCcccH
Confidence 3466778889998888999988888887654 12444554444443
No 67
>PRK15344 type III secretion system needle protein SsaG; Provisional
Probab=22.85 E-value=2e+02 Score=22.74 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=32.2
Q ss_pred chhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhHHHHHhhhcCCcccchhHHHhHHHHhhhhhhhHH
Q 023819 170 MEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIGTLAHQQTISIIQERASLPIISLQPVVAGAAKKTSHAVGQAT 249 (276)
Q Consensus 170 lEISDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq~~~~A~~~t~~~lqErA~l~~~s~~PvVa~AA~kt~~~v~~a~ 249 (276)
|.|+.++.+|++..++.++- |+.+=.. ........|+|=...+.-|| +.-....++-++-
T Consensus 1 m~i~~~~~~L~~~~~~~~q~-------vq~~m~a------~~~~nP~~ml~lQf~i~QyS-------~~~n~~Ss~~K~i 60 (71)
T PRK15344 1 MDIAQLVDMLSHMAHQAGQA-------INDKMNG------NDLLNPESMIKAQFALQQYS-------TFINYESSLIKMI 60 (71)
T ss_pred CCHHHHHHHHHHHHHHHHHH-------HHHHHhC------CCCCCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 45667777666555544444 4332221 22234456666655555555 3334444554444
Q ss_pred HHHHH
Q 023819 250 KTLMN 254 (276)
Q Consensus 250 ~~~~n 254 (276)
|-++.
T Consensus 61 KDm~~ 65 (71)
T PRK15344 61 KDMLS 65 (71)
T ss_pred HHHHH
Confidence 44444
No 68
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=22.71 E-value=6e+02 Score=23.29 Aligned_cols=70 Identities=20% Similarity=0.346 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhChhhHHHHHhhcchhhhhhHHhhhhhHHHHHHHHHH-HHHHHHHHHhhhhhccchhhhhHHHHHh
Q 023819 145 TSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKS-AQAVQAAEAGIRQIGTLAHQQTISIIQE 221 (276)
Q Consensus 145 ~SleKL~Dtv~eELP~TLAAIRLSGlEISDLT~eLsdLsQei~~GVrss-a~~V~aaeaglrq~~~~A~~~t~~~lqE 221 (276)
..+..++|.|..+++.-+ -|+.|+-+++.+|-++|..+.... .+++++|+....+....|......||++
T Consensus 26 eEVdeFLD~V~~dye~~l-------~e~~~l~~~i~~L~~~l~~~~~~~~s~~i~~a~~~a~~~~~~a~~ea~~il~~ 96 (212)
T COG3599 26 EEVDEFLDDVIDDYEQLL-------DENEDLEDEIDELKEELKEAADAEDSQAIQQAETEAEELKQAAEAEADDILKR 96 (212)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999888877 477788888888888888766541 1455566554444444444444455544
No 69
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=22.39 E-value=4.5e+02 Score=21.73 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhChhhHHHH
Q 023819 137 LYAMGRAATSLSKLADTAREELPSTMAAI 165 (276)
Q Consensus 137 L~AlkRAA~SleKL~Dtv~eELP~TLAAI 165 (276)
+..+...+..+.+..+.+.+..-.+...+
T Consensus 41 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 69 (262)
T smart00283 41 ADEIAATAQSAAEAAEEGREAVEDAITAM 69 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 70
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=21.94 E-value=3.8e+02 Score=20.73 Aligned_cols=60 Identities=22% Similarity=0.146 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHhhChhhHHHHHhhcchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 023819 139 AMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAG 203 (276)
Q Consensus 139 AlkRAA~SleKL~Dtv~eELP~TLAAIRLSGlEISDLT~eLsdLsQei~~GVrssa~~V~aaeag 203 (276)
++......++.++..-.....++= +..|+.++..||.+--++|..-+.--.++|..++.-
T Consensus 9 ev~~sl~~l~~~~~~~~~~~~~~~-----~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~n 68 (97)
T PF09177_consen 9 EVQSSLDRLESLYRRWQRLRSDTS-----SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKN 68 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC-----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445555666666655554444332 344666777777766666666666666777766653
No 71
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=21.40 E-value=1.2e+03 Score=26.18 Aligned_cols=27 Identities=7% Similarity=-0.005 Sum_probs=18.3
Q ss_pred hhhhhHHhhhhhHHHHHHHHHHHHHHH
Q 023819 172 ISDLTLELSDLSQEIADGVNKSAQAVQ 198 (276)
Q Consensus 172 ISDLT~eLsdLsQei~~GVrssa~~V~ 198 (276)
+.+..+.+....|++.+++++...+..
T Consensus 247 vi~~l~~v~~~~~el~~~~~ave~m~~ 273 (865)
T KOG4331|consen 247 VIPVLDYVLSAAQELREMSEAVENMND 273 (865)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567778888888887777655444
No 72
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=21.29 E-value=76 Score=26.42 Aligned_cols=17 Identities=29% Similarity=0.630 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHH
Q 023819 110 QAFFLLAFIACTTSVAF 126 (276)
Q Consensus 110 ~~f~lLs~~~~vvavAl 126 (276)
+-+|+|+++++.+.|||
T Consensus 3 RRlwiLslLAVtLtVAL 19 (100)
T PF05984_consen 3 RRLWILSLLAVTLTVAL 19 (100)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 34898877766544443
No 73
>TIGR01113 mtrE N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit E. coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=20.67 E-value=4.5e+02 Score=25.63 Aligned_cols=14 Identities=14% Similarity=0.100 Sum_probs=12.3
Q ss_pred HHHHHHhhChhhHH
Q 023819 150 LADTAREELPSTMA 163 (276)
Q Consensus 150 L~Dtv~eELP~TLA 163 (276)
.+|+++..+|++|+
T Consensus 118 ylDvl~~~~~~i~~ 131 (283)
T TIGR01113 118 YLDMLTSHLGPIAG 131 (283)
T ss_pred hHHHHHhhchhHHH
Confidence 57999999999983
No 74
>PF11812 DUF3333: Domain of unknown function (DUF3333); InterPro: IPR024573 This N-terminal domain is functionally uncharacterised and it is found in proteins annotated as putative phosphate ABC transporter permease proteins. This presumed domain is typically between 116 to 159 amino acids in length.
Probab=20.58 E-value=1.5e+02 Score=25.77 Aligned_cols=27 Identities=19% Similarity=0.365 Sum_probs=22.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 023819 108 SDQAFFLLAFIACTTSVAFTSLVVAAI 134 (276)
Q Consensus 108 ~d~~f~lLs~~~~vvavAltaLl~~AI 134 (276)
.++.|=++|++++++|++|.+++++.|
T Consensus 11 ~e~rFr~~g~~Ai~~~l~fL~~ll~sI 37 (155)
T PF11812_consen 11 AERRFRAYGLAAIAIALAFLVILLFSI 37 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456687889999999999888888876
No 75
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=20.25 E-value=4.8e+02 Score=21.26 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=14.2
Q ss_pred hhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 023819 172 ISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIG 208 (276)
Q Consensus 172 ISDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq~~ 208 (276)
|.+.++++.+..+++.+.++.-...++.....+.++.
T Consensus 140 i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~~~i~~i~ 176 (213)
T PF00015_consen 140 IAESVEEISDSIEEISESAEEQSESIEQINESIEEIS 176 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444433333333333333333
No 76
>PF04206 MtrE: Tetrahydromethanopterin S-methyltransferase, subunit E ; InterPro: IPR005780 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane
Probab=20.19 E-value=4e+02 Score=25.80 Aligned_cols=14 Identities=36% Similarity=0.487 Sum_probs=12.3
Q ss_pred HHHHHHhhChhhHH
Q 023819 150 LADTAREELPSTMA 163 (276)
Q Consensus 150 L~Dtv~eELP~TLA 163 (276)
.+|.++..+|++|+
T Consensus 118 ylDvl~~~~~~i~~ 131 (269)
T PF04206_consen 118 YLDVLRSHTPPIMA 131 (269)
T ss_pred ehHHHhhhchhHHH
Confidence 57999999999984
Done!