Query 023819
Match_columns 276
No_of_seqs 71 out of 73
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 13:19:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023819.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023819hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zx6_A HAMP, methyl-accepting 76.5 40 0.0014 29.8 12.2 13 174-186 66-78 (341)
2 2f95_B Sensory rhodopsin II tr 59.0 5.6 0.00019 29.4 2.5 25 169-193 111-135 (163)
3 2ch7_A Methyl-accepting chemot 58.6 58 0.002 27.2 8.9 32 153-184 163-194 (309)
4 3zrx_A AF1503 protein, osmolar 57.2 31 0.001 23.1 5.8 24 169-192 36-59 (115)
5 3g67_A Methyl-accepting chemot 46.4 1.4E+02 0.0048 25.6 10.8 68 136-204 100-167 (213)
6 3gwk_C SAG1039, putative uncha 34.2 1.2E+02 0.0041 21.3 8.1 68 139-206 19-94 (98)
7 1jb0_M Photosystem 1 reaction 32.7 35 0.0012 22.3 2.7 15 127-141 10-24 (31)
8 3lnr_A Aerotaxis transducer AE 32.3 2E+02 0.0068 23.2 8.6 119 138-266 15-138 (175)
9 3zbh_A ESXA; unknown function, 30.3 1.4E+02 0.0047 20.7 8.1 67 139-205 20-94 (99)
10 1dow_A Alpha-catenin; four-hel 28.5 1E+02 0.0035 26.6 5.8 40 141-180 17-56 (205)
11 3dl8_E Protein-export membrane 27.9 30 0.001 27.6 2.1 50 104-163 47-96 (107)
12 1ykh_B RNA polymerase II holoe 25.3 2.4E+02 0.0081 22.5 7.1 63 142-208 68-130 (132)
13 1yke_B RNA polymerase II holoe 24.4 2.2E+02 0.0076 23.4 6.9 63 149-211 71-133 (151)
14 3ku8_A GYRA14, DNA gyrase subu 23.7 34 0.0011 28.8 1.8 23 166-188 124-146 (156)
15 3zcc_A HAMP, osmolarity sensor 22.2 1.5E+02 0.0052 19.7 4.7 38 169-206 36-73 (114)
16 2f95_B Sensory rhodopsin II tr 21.9 43 0.0015 24.5 2.0 15 176-190 111-125 (163)
17 3hd7_B Syntaxin-1A; membrane p 21.4 2.1E+02 0.0071 21.9 5.8 48 163-210 31-78 (109)
18 3ghg_B Fibrinogen beta chain; 20.5 2.2E+02 0.0075 27.8 7.0 44 177-221 105-148 (461)
No 1
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=76.53 E-value=40 Score=29.80 Aligned_cols=13 Identities=8% Similarity=0.125 Sum_probs=4.6
Q ss_pred hhhHHhhhhhHHH
Q 023819 174 DLTLELSDLSQEI 186 (276)
Q Consensus 174 DLT~eLsdLsQei 186 (276)
+-+.+++...+++
T Consensus 66 ~~~~~l~~~~~~~ 78 (341)
T 3zx6_A 66 SGASEIATGNNDL 78 (341)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 2
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=58.95 E-value=5.6 Score=29.40 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=0.0
Q ss_pred cchhhhhhHHhhhhhHHHHHHHHHH
Q 023819 169 GMEISDLTLELSDLSQEIADGVNKS 193 (276)
Q Consensus 169 GlEISDLT~eLsdLsQei~~GVrss 193 (276)
.-|+.++.+.++++.+++.+-++..
T Consensus 111 ~dEi~~L~~~~n~m~~~l~~~~~~~ 135 (163)
T 2f95_B 111 EDEIGDLYAAFDEMRQSVRTSLEDA 135 (163)
T ss_dssp -------------------------
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777776666666665555443
No 3
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=58.58 E-value=58 Score=27.19 Aligned_cols=32 Identities=6% Similarity=0.190 Sum_probs=15.5
Q ss_pred HHHhhChhhHHHHHhhcchhhhhhHHhhhhhH
Q 023819 153 TAREELPSTMAAIRLSGMEISDLTLELSDLSQ 184 (276)
Q Consensus 153 tv~eELP~TLAAIRLSGlEISDLT~eLsdLsQ 184 (276)
++.+|+-.--...+..+.+|.++++++.++..
T Consensus 163 VVA~eIr~LA~~t~~~~~~i~~v~~~i~~~a~ 194 (309)
T 2ch7_A 163 VVADEIRKLAEESQQASENVRRVVNEIRSIAE 194 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445555555555555544443
No 4
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=57.17 E-value=31 Score=23.12 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=14.4
Q ss_pred cchhhhhhHHhhhhhHHHHHHHHH
Q 023819 169 GMEISDLTLELSDLSQEIADGVNK 192 (276)
Q Consensus 169 GlEISDLT~eLsdLsQei~~GVrs 192 (276)
.-||.++...+..+.+++.+-++.
T Consensus 36 ~dEi~~l~~~~n~m~~~l~~~~~~ 59 (115)
T 3zrx_A 36 ADEIGILAKSIERLRRSLKQLADD 59 (115)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666666655555
No 5
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=46.37 E-value=1.4e+02 Score=25.56 Aligned_cols=68 Identities=15% Similarity=0.057 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhChhhHHHHHhhcchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 023819 136 ALYAMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGI 204 (276)
Q Consensus 136 tL~AlkRAA~SleKL~Dtv~eELP~TLAAIRLSGlEISDLT~eLsdLsQei~~GVrssa~~V~aaeagl 204 (276)
+=.+..||++.- |=|.+|.+|+-.--..-+-+..+|.++..++.+..++..+.++.....+......+
T Consensus 100 AaIEAAraGe~G-rGFaVVA~Evr~La~~t~~~~~~I~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (213)
T 3g67_A 100 ATIEAARAGEAG-KGFMIVANEVQNLSNETNEVTKQIVEKAREILESSQRSLENLEFMANLFETVGKTL 167 (213)
T ss_dssp HHHHHHHHCGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445554443 34556666654444444444455555555555444444444444444443333333
No 6
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=34.21 E-value=1.2e+02 Score=21.31 Aligned_cols=68 Identities=15% Similarity=0.179 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHhhChhhH--------HHHHhhcchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 023819 139 AMGRAATSLSKLADTAREELPSTM--------AAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQ 206 (276)
Q Consensus 139 AlkRAA~SleKL~Dtv~eELP~TL--------AAIRLSGlEISDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq 206 (276)
.+.+++..++...+.+..++-+.- .+..-.=.+...-..++.++-++|.+-++.++...+.+|..+-+
T Consensus 19 ~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~D~~~A~ 94 (98)
T 3gwk_C 19 KYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADIAS 94 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665554432 22233333555666677777777888888888888888876543
No 7
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=32.72 E-value=35 Score=22.25 Aligned_cols=15 Identities=40% Similarity=0.676 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHH
Q 023819 127 TSLVVAAIPALYAMG 141 (276)
Q Consensus 127 taLl~~AIPtL~Alk 141 (276)
.+|+++.+|.++|+|
T Consensus 10 iAL~~Al~~~iLA~r 24 (31)
T 1jb0_M 10 VALVIALLPAVLAFR 24 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666777777765
No 8
>3lnr_A Aerotaxis transducer AER2; HAMP domain, poly-HAMP domains, signaling protein; 2.64A {Pseudomonas aeruginosa}
Probab=32.32 E-value=2e+02 Score=23.23 Aligned_cols=119 Identities=13% Similarity=0.130 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhChhhHHHHHhhcchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhHH
Q 023819 138 YAMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIGTLAHQQTIS 217 (276)
Q Consensus 138 ~AlkRAA~SleKL~Dtv~eELP~TLAAIRLSGlEISDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq~~~~A~~~t~~ 217 (276)
+-+++++..+++++ .=.|...+.. -..-|+.+|...+....+.+.+-|... ++.++.+..+..++......
T Consensus 15 ~pL~~~~~~a~~IA---~GDL~~~i~~--~~~DEig~L~~al~~M~~~L~~~v~~i----~~v~~l~~e~~~~a~~~~~G 85 (175)
T 3lnr_A 15 QRADRIATLLQSFA---DGQLDTAVGE--APAPGYERLYDSLRALQRQLREQRAEL----QQVESLEAGLAEMSRQHEAG 85 (175)
T ss_dssp HHHHHHHHHHHHHH---TTCCSSCCCC--CSSGGGHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH---CCCCCCCCcC--CCCCchHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCC
Confidence 34566666666666 2334332211 134567767666666665555444332 22222222222222211111
Q ss_pred HHHhhhcCCccc--chhH---HHhHHHHhhhhhhhHHHHHHHHhccCCCCCCCC
Q 023819 218 IIQERASLPIIS--LQPV---VAGAAKKTSHAVGQATKTLMNMISRGELSSENE 266 (276)
Q Consensus 218 ~lqErA~l~~~s--~~Pv---Va~AA~kt~~~v~~a~~~~~n~is~~~~~~~~~ 266 (276)
-+..|+..+.+. .+.+ |..++...-..+.. ...+++-++.|+++..-+
T Consensus 86 dl~~R~d~~~~~G~~~~l~~~vN~~~~~~~~~~~~-~~~v~~~~a~GDl~~~i~ 138 (175)
T 3lnr_A 86 WIDQTIPAERLEGRAARIAKGVNELVAAHIAVKMK-VVSVVTAYGQGNFEPLMD 138 (175)
T ss_dssp CTTCCCCGGGCCTHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSCCCCCCC
T ss_pred CcccccCccccChHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHhCCCCCchhh
Confidence 223344332211 1122 22234333333333 455677788899877644
No 9
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=30.29 E-value=1.4e+02 Score=20.70 Aligned_cols=67 Identities=12% Similarity=0.122 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHhhChhhH--------HHHHhhcchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 023819 139 AMGRAATSLSKLADTAREELPSTM--------AAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIR 205 (276)
Q Consensus 139 AlkRAA~SleKL~Dtv~eELP~TL--------AAIRLSGlEISDLT~eLsdLsQei~~GVrssa~~V~aaeaglr 205 (276)
.+.+++..++...+.+...+-..- .+.+-.=.+...-..++.++-++|.+.++.++...+.+|..+-
T Consensus 20 ~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~d~~~a 94 (99)
T 3zbh_A 20 QYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQIA 94 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554444321 1222222345555566666666777777777777777777553
No 10
>1dow_A Alpha-catenin; four-helix bundle, cell adhesion; 1.80A {Mus musculus} SCOP: a.24.9.1 PDB: 1dov_A
Probab=28.54 E-value=1e+02 Score=26.61 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHHHhhcchhhhhhHHhh
Q 023819 141 GRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELS 180 (276)
Q Consensus 141 kRAA~SleKL~Dtv~eELP~TLAAIRLSGlEISDLT~eLs 180 (276)
-.-++.+..=.+-+.+|+|+.+..+|.+|..+.+.++++.
T Consensus 17 v~vG~~ia~e~~~lk~dM~~A~~~v~~ag~~l~~a~~~~~ 56 (205)
T 1dow_A 17 LEKGDKIAKESQFLKEELVVAVEDVRKQGDLMKSAAGEFA 56 (205)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333333344899999999999999999999988873
No 11
>3dl8_E Protein-export membrane protein SECG; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=27.85 E-value=30 Score=27.59 Aligned_cols=50 Identities=12% Similarity=0.121 Sum_probs=19.0
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHH
Q 023819 104 KLSLSDQAFFLLAFIACTTSVAFTSLVVAAIPALYAMGRAATSLSKLADTAREELPSTMA 163 (276)
Q Consensus 104 ~l~l~d~~f~lLs~~~~vvavAltaLl~~AIPtL~AlkRAA~SleKL~Dtv~eELP~TLA 163 (276)
.-++.++..|+++++++++++.+..+. .+....+++.......|-|+|..
T Consensus 47 ~~~~L~K~T~ilailF~v~sl~L~~l~----------~~~~sv~~~~~~~~~~~~~~~~~ 96 (107)
T 3dl8_E 47 VETILTKATYWLGALFLVLALLLSVIP----------KEKGSVVEKSVQTEQSEGKGTTQ 96 (107)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHCC----------------------------------
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHh----------cCCcchhhhhhhhhhccCCCccc
Confidence 456788999999888887665544332 34555667777777777777764
No 12
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=25.32 E-value=2.4e+02 Score=22.53 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHhhcchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 023819 142 RAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIG 208 (276)
Q Consensus 142 RAA~SleKL~Dtv~eELP~TLAAIRLSGlEISDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq~~ 208 (276)
.+++-++.|. ..||+-=.+=..-=..|.+|-.|+....+++.+-|+.....+..++.-|+.++
T Consensus 68 ~k~kqIe~LI----dsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i~ 130 (132)
T 1ykh_B 68 LKTRQINKLI----DSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIEDFV 130 (132)
T ss_dssp HHHHHHHHHH----HHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH----HhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555554 55675321222222346677788888888888888888888888888877664
No 13
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=24.43 E-value=2.2e+02 Score=23.41 Aligned_cols=63 Identities=13% Similarity=0.153 Sum_probs=43.1
Q ss_pred HHHHHHHhhChhhHHHHHhhcchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccch
Q 023819 149 KLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIGTLA 211 (276)
Q Consensus 149 KL~Dtv~eELP~TLAAIRLSGlEISDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq~~~~A 211 (276)
|-.|++-..||+-=.+=..-=..|.+|-.|+....+++.+-|+.....+..++.-|+.++.-.
T Consensus 71 kqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia~~~ 133 (151)
T 1yke_B 71 RQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVDGI 133 (151)
T ss_dssp HHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455675322222223356778888888889999999999999999988888876643
No 14
>3ku8_A GYRA14, DNA gyrase subunit A; alpha+beta, SH3 domain, topoisomerase, toxin-isomerase compl; HET: DNA; 1.93A {Escherichia coli} PDB: 4ely_A* 1x75_A* 3kua_A* 4elz_A*
Probab=23.70 E-value=34 Score=28.75 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=21.3
Q ss_pred HhhcchhhhhhHHhhhhhHHHHH
Q 023819 166 RLSGMEISDLTLELSDLSQEIAD 188 (276)
Q Consensus 166 RLSGlEISDLT~eLsdLsQei~~ 188 (276)
||+|+|...+.+|..+|..+|.+
T Consensus 124 rLT~LE~~ki~~E~~eL~~~I~~ 146 (156)
T 3ku8_A 124 KLTGLEHEKLLDEYKELLDQIAE 146 (156)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999874
No 15
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=22.15 E-value=1.5e+02 Score=19.69 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=28.1
Q ss_pred cchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 023819 169 GMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQ 206 (276)
Q Consensus 169 GlEISDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq 206 (276)
.-||.++...+..+.+++.+-++...+.+..+-..+|.
T Consensus 36 ~dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~t 73 (114)
T 3zcc_A 36 ADEIGILAKSIERLRRSLKQLADDGTLLMAGVSHDLRT 73 (114)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcC
Confidence 46888888888888888887777766666666566665
No 16
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=21.91 E-value=43 Score=24.52 Aligned_cols=15 Identities=20% Similarity=0.162 Sum_probs=0.0
Q ss_pred hHHhhhhhHHHHHHH
Q 023819 176 TLELSDLSQEIADGV 190 (276)
Q Consensus 176 T~eLsdLsQei~~GV 190 (276)
.||+++|.+.+.+-.
T Consensus 111 ~dEi~~L~~~~n~m~ 125 (163)
T 2f95_B 111 EDEIGDLYAAFDEMR 125 (163)
T ss_dssp ---------------
T ss_pred CChHHHHHHHHHHHH
Confidence 455555544444333
No 17
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=21.43 E-value=2.1e+02 Score=21.90 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=26.6
Q ss_pred HHHHhhcchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 023819 163 AAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIGTL 210 (276)
Q Consensus 163 AAIRLSGlEISDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq~~~~ 210 (276)
..+.---.+++.+..|=++..+.|.+-|..+..-|+.+...|++....
T Consensus 31 ~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~y 78 (109)
T 3hd7_B 31 RELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 78 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444555555555566666666666666666666665443
No 18
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=20.49 E-value=2.2e+02 Score=27.83 Aligned_cols=44 Identities=9% Similarity=-0.045 Sum_probs=17.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhHHHHHh
Q 023819 177 LELSDLSQEIADGVNKSAQAVQAAEAGIRQIGTLAHQQTISIIQE 221 (276)
Q Consensus 177 ~eLsdLsQei~~GVrssa~~V~aaeaglrq~~~~A~~~t~~~lqE 221 (276)
++|++.+.++-+=|+........++.....- ..+.++-.+||||
T Consensus 105 ~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n-~~~~~~s~~mle~ 148 (461)
T 3ghg_B 105 EAVSQTSSSSFQYMYLLKDLWQKRQKQVKDN-ENVVNEYSSELEK 148 (461)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH-HHTTSCHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHhccccCCCCcc-hhHHHHHHHHHHH
Confidence 3333333333333333333333333333332 3333444455655
Done!