Query 023819
Match_columns 276
No_of_seqs 71 out of 73
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 13:19:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023819.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023819hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pila_ d.24.1.1 (A:) Pilin Gc 42.8 35 0.0026 22.9 6.4 20 126-145 13-32 (158)
2 d1t01a1 a.24.9.1 (A:1-125) Vin 41.8 11 0.00082 28.4 3.8 29 153-181 69-97 (125)
3 d1i5na_ a.24.10.3 (A:) Chemota 40.0 23 0.0017 24.9 5.1 20 137-156 56-75 (128)
4 d1jb0m_ f.23.19.1 (M:) Subunit 39.9 15 0.0011 22.5 3.4 18 127-144 10-27 (31)
5 d1dova_ a.24.9.1 (A:) alpha-ca 32.2 58 0.0042 25.5 6.8 60 153-212 4-74 (181)
6 d1st6a4 a.24.9.1 (A:372-488) V 31.0 35 0.0025 25.8 5.0 50 159-208 54-103 (117)
7 d1st6a3 a.24.9.1 (A:253-371) V 28.0 20 0.0015 27.2 3.1 44 139-185 46-89 (119)
8 d1x75a1 e.11.1.1 (A:363-494) D 26.9 13 0.00094 28.1 1.8 23 166-188 103-125 (132)
9 d1b74a1 c.78.2.1 (A:1-105) Glu 20.0 47 0.0034 24.3 3.8 33 210-242 72-105 (105)
10 d1v54j_ f.23.4.1 (J:) Mitochon 13.9 1.1E+02 0.008 20.6 4.2 28 96-126 18-45 (58)
No 1
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=42.76 E-value=35 Score=22.87 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023819 126 FTSLVVAAIPALYAMGRAAT 145 (276)
Q Consensus 126 ltaLl~~AIPtL~AlkRAA~ 145 (276)
+..|..+++|.++...+.++
T Consensus 13 IgILaaia~P~~~~~~~~a~ 32 (158)
T d2pila_ 13 VGILAAVALPAYQDYTARAQ 32 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45567788999988777655
No 2
>d1t01a1 a.24.9.1 (A:1-125) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=41.79 E-value=11 Score=28.44 Aligned_cols=29 Identities=7% Similarity=0.200 Sum_probs=25.6
Q ss_pred HHHhhChhhHHHHHhhcchhhhhhHHhhh
Q 023819 153 TAREELPSTMAAIRLSGMEISDLTLELSD 181 (276)
Q Consensus 153 tv~eELP~TLAAIRLSGlEISDLT~eLsd 181 (276)
.+++|+|++...+|.+|..+.+.++.+.+
T Consensus 69 ~lk~eM~~A~~~vr~ag~~l~~aa~~l~~ 97 (125)
T d1t01a1 69 ILKRDMPPAFIKVENACTKLVRAAQMLQA 97 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 38999999999999999999988887653
No 3
>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}
Probab=40.02 E-value=23 Score=24.86 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 023819 137 LYAMGRAATSLSKLADTARE 156 (276)
Q Consensus 137 L~AlkRAA~SleKL~Dtv~e 156 (276)
+..+.+.|..+|.+++.+++
T Consensus 56 l~~i~~lah~lE~~l~~lr~ 75 (128)
T d1i5na_ 56 FTILQETTHLMENLLDEARR 75 (128)
T ss_dssp CHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 45566666777777776654
No 4
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=39.89 E-value=15 Score=22.54 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023819 127 TSLVVAAIPALYAMGRAA 144 (276)
Q Consensus 127 taLl~~AIPtL~AlkRAA 144 (276)
.+|+++.||.++|++-|-
T Consensus 10 valvial~pg~lafrlat 27 (31)
T d1jb0m_ 10 VALVIALLPAVLAFRLST 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567788899999987543
No 5
>d1dova_ a.24.9.1 (A:) alpha-catenin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.24 E-value=58 Score=25.45 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=41.3
Q ss_pred HHHhhChhhHHHHHhhcchhhhhhHHhhhh------hHHHHHHHHH----HHHHHHHHHH-hhhhhccchh
Q 023819 153 TAREELPSTMAAIRLSGMEISDLTLELSDL------SQEIADGVNK----SAQAVQAAEA-GIRQIGTLAH 212 (276)
Q Consensus 153 tv~eELP~TLAAIRLSGlEISDLT~eLsdL------sQei~~GVrs----sa~~V~aaea-glrq~~~~A~ 212 (276)
.+++|+|++...+|.+|.-+.+.+..+.+= +..+-+|.|. +.+++-.||. .+|++...+.
T Consensus 4 ~lk~em~~A~~~v~~ag~~l~~aa~~~~~dp~s~~~R~~lv~aaR~lLs~vt~lLllaD~~~Vr~il~~~~ 74 (181)
T d1dova_ 4 FLKEELVVAVEDVRKQGDLMKSAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLILADMADVYKLLVQLK 74 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999888877642 4445555554 3444444554 6777665553
No 6
>d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=31.05 E-value=35 Score=25.84 Aligned_cols=50 Identities=24% Similarity=0.228 Sum_probs=28.5
Q ss_pred hhhHHHHHhhcchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 023819 159 PSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIG 208 (276)
Q Consensus 159 P~TLAAIRLSGlEISDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq~~ 208 (276)
|--=+.|.=.+-||..+|++|.||+++=-..-=...+..++....|+.+.
T Consensus 54 P~~r~~il~lc~ei~~lt~qLadLr~~GkG~sPeA~~lA~qi~~kL~~L~ 103 (117)
T d1st6a4 54 PKERDDILRSLGEISALTAKLSDLRRHGKGDSPEARALAKQIATSLQNLQ 103 (117)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 33456677777788888888888887532111122333344444554443
No 7
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=27.96 E-value=20 Score=27.24 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHhhChhhHHHHHhhcchhhhhhHHhhhhhHH
Q 023819 139 AMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQE 185 (276)
Q Consensus 139 AlkRAA~SleKL~Dtv~eELP~TLAAIRLSGlEISDLT~eLsdLsQe 185 (276)
+++.--....|+++.. .|+-=+.|.=.+-||..+|++|.+|+++
T Consensus 46 AiR~il~earkva~~~---~~~~r~~Il~~c~ei~~lt~qLadLr~~ 89 (119)
T d1st6a3 46 AIRQILDEAGKAGELC---AGKERREILGTCKTLGQMTDQLADLRAR 89 (119)
T ss_dssp HHHHHHHHHHHHHHTT---CSTTHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhC---CchhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444444444332 2444466777777888888888877764
No 8
>d1x75a1 e.11.1.1 (A:363-494) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Probab=26.86 E-value=13 Score=28.11 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.9
Q ss_pred HhhcchhhhhhHHhhhhhHHHHH
Q 023819 166 RLSGMEISDLTLELSDLSQEIAD 188 (276)
Q Consensus 166 RLSGlEISDLT~eLsdLsQei~~ 188 (276)
||+|+|...+..|..+|..+|.+
T Consensus 103 rLT~LE~~kl~~E~~eL~~~I~~ 125 (132)
T d1x75a1 103 KLTGLEHEKLLDEYKELLDQIAE 125 (132)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999988864
No 9
>d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}
Probab=20.05 E-value=47 Score=24.26 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=24.8
Q ss_pred chhhhhHHHHHhhhcCCccc-chhHHHhHHHHhh
Q 023819 210 LAHQQTISIIQERASLPIIS-LQPVVAGAAKKTS 242 (276)
Q Consensus 210 ~A~~~t~~~lqErA~l~~~s-~~PvVa~AA~kt~ 242 (276)
.|.......++++.++|++. +.|-+.-|++.|+
T Consensus 72 TaS~~al~~lr~~~~~PiiGvi~P~ik~A~~~tk 105 (105)
T d1b74a1 72 TASAYALERLKKEINVPVFGVIEPGVKEALKKSR 105 (105)
T ss_dssp HHHHHHHHHHHHHSSSCEEESHHHHHHHHHHHCS
T ss_pred cHHHHHHHHHHHHCCCCEEEeehHHHHHHHHhcC
Confidence 33344456688899999999 4799988888764
No 10
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.92 E-value=1.1e+02 Score=20.61 Aligned_cols=28 Identities=18% Similarity=0.440 Sum_probs=22.6
Q ss_pred CCCCCCCcccCCcchHHHHHHHHHHHHHHHH
Q 023819 96 VPSFLPPAKLSLSDQAFFLLAFIACTTSVAF 126 (276)
Q Consensus 96 ~p~~~~~~~l~l~d~~f~lLs~~~~vvavAl 126 (276)
.|-++ +-|..|.++|-+.+.+|+++..-
T Consensus 18 ~PVhL---KGG~~D~~LYr~Tm~L~~~G~~~ 45 (58)
T d1v54j_ 18 LPVHL---KGGATDNILYRVTMTLCLGGTLY 45 (58)
T ss_dssp CCTTT---TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEe---cCCcchHHHHHHHHHHHHHHHHH
Confidence 45566 88999999999999999887643
Done!