BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023820
(276 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 305 bits (780), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 186/256 (72%), Positives = 208/256 (81%), Gaps = 16/256 (6%)
Query: 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAED 60
MSSR+SRT+YVGNLPGDIREREVEDLF KYGP+ IDLK+PPRPPGYAFVEF++ARDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGV-----------SRRSEY 109
AI GRDGYDFDGHRLRVELAHGGR RSS D S + G G SRRSE+
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 119
Query: 110 -LLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS 168
+LVTGLPSSASWQDLKDHMR+ GDVCFSQV+RD GTTG+VDYT Y+DMK+A+KKLDD+
Sbjct: 120 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 179
Query: 169 EFRNAFSRAYVRVREYDHRRDGSQSPSRGRSYSRGRSESRSRSRSRGRSYSRSRSQSKSP 228
EFRNAFS YVRVREYD R+D S+SPS R S +S SRSR RS RS SRSRS+S+SP
Sbjct: 180 EFRNAFSNGYVRVREYDSRKD-SRSPS--RGRSYSKSRSRSRGRSVSRSRSRSRSRSRSP 236
Query: 229 KAKSSRRSPDRSRSRS 244
KAKSSRRSP +S SRS
Sbjct: 237 KAKSSRRSPAKSTSRS 252
>sp|Q5ZML3|SRSF1_CHICK Serine/arginine-rich splicing factor 1 OS=Gallus gallus GN=SRSF1
PE=1 SV=3
Length = 257
Score = 184 bits (467), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 106/199 (53%), Positives = 135/199 (67%), Gaps = 13/199 (6%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGV---SRRSEY-LLVTGLPSSASWQDL 124
D+DG+RLRVE GRG SRRSEY ++V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDL 137
Query: 125 KDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVRE 183
KDHMR AGDVC++ VFRDG TG+V++ +DM +A++KLD+++FR + AY+RV
Sbjct: 138 KDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV-- 192
Query: 184 YDHRRDGSQSPSRGRSYSR 202
+ DG +SPS GRS SR
Sbjct: 193 ---KVDGPRSPSYGRSRSR 208
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis
elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 175 bits (443), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/193 (50%), Positives = 128/193 (66%), Gaps = 19/193 (9%)
Query: 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65
+ +YVGNLPGD+RE+EVED+F+KYG I ++D+K R P +AFVEFE+ RDAEDA+R R
Sbjct: 8 DQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRAR 66
Query: 66 DGYDFDGHRLRVE--------------LAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLL 111
DGY+FDG R+RVE L GG R R G R ++
Sbjct: 67 DGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVI 126
Query: 112 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 171
V GLP + SWQDLKDHMR AGDVC++ V RDG TG+V++T Y+D+K+A++KLDD++FR
Sbjct: 127 VEGLPPTGSWQDLKDHMRDAGDVCYADVARDG---TGVVEFTRYEDVKYAVRKLDDTKFR 183
Query: 172 -NAFSRAYVRVRE 183
+ AY+RVRE
Sbjct: 184 SHEGETAYIRVRE 196
>sp|Q6NYA0|SRS1B_DANRE Serine/arginine-rich splicing factor 1B OS=Danio rerio GN=srsf1b
PE=2 SV=1
Length = 245
Score = 175 bits (443), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 97/179 (54%), Positives = 124/179 (69%), Gaps = 8/179 (4%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNLP DIR ++VED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGY
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 76
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGV---SRRSEY-LLVTGLPSSASWQDL 124
D+DG+RLRVE GRG SRRSEY ++V+GLP S SWQDL
Sbjct: 77 DYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDL 136
Query: 125 KDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 182
KDHMR AGDVC++ VFRDG TG+V++ +DM +A++KLD+++FR + AY+RV+
Sbjct: 137 KDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 192
>sp|Q6DII2|SRSF1_XENTR Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis
GN=srsf1 PE=2 SV=1
Length = 267
Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/198 (49%), Positives = 126/198 (63%), Gaps = 27/198 (13%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSS----------------------GRGRGVSRR 106
D+DG+RLRVE GRG GR SRR
Sbjct: 78 DYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRR 137
Query: 107 SEY-LLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 165
SEY ++V+GLP S SWQDLKDHMR AGDVC++ VFRDG TG+V++ +DM +A++KL
Sbjct: 138 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKL 194
Query: 166 DDSEFR-NAFSRAYVRVR 182
D+++FR + AY+RV+
Sbjct: 195 DNTKFRSHEGETAYIRVK 212
>sp|Q5R7H2|SRSF1_PONAB Serine/arginine-rich splicing factor 1 OS=Pongo abelii GN=SRSF1
PE=2 SV=3
Length = 248
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/179 (52%), Positives = 123/179 (68%), Gaps = 8/179 (4%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGV---SRRSEY-LLVTGLPSSASWQDL 124
D+DG+RLRVE GRG SRRSE ++V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 125 KDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 182
KDHMR AGDVC++ V+RDG TG+V++ +DM +A++KLD+++FR + AY+RV+
Sbjct: 138 KDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
>sp|Q3YLA6|SRSF1_PIG Serine/arginine-rich splicing factor 1 OS=Sus scrofa GN=SRSF1 PE=2
SV=3
Length = 248
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/179 (52%), Positives = 123/179 (68%), Gaps = 8/179 (4%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGV---SRRSEY-LLVTGLPSSASWQDL 124
D+DG+RLRVE GRG SRRSE ++V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 125 KDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 182
KDHMR AGDVC++ V+RDG TG+V++ +DM +A++KLD+++FR + AY+RV+
Sbjct: 138 KDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
>sp|Q6PDM2|SRSF1_MOUSE Serine/arginine-rich splicing factor 1 OS=Mus musculus GN=Srsf1
PE=1 SV=3
Length = 248
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/179 (52%), Positives = 123/179 (68%), Gaps = 8/179 (4%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGV---SRRSEY-LLVTGLPSSASWQDL 124
D+DG+RLRVE GRG SRRSE ++V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 125 KDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 182
KDHMR AGDVC++ V+RDG TG+V++ +DM +A++KLD+++FR + AY+RV+
Sbjct: 138 KDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
>sp|Q07955|SRSF1_HUMAN Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1
PE=1 SV=2
Length = 248
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/179 (52%), Positives = 123/179 (68%), Gaps = 8/179 (4%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGV---SRRSEY-LLVTGLPSSASWQDL 124
D+DG+RLRVE GRG SRRSE ++V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 125 KDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 182
KDHMR AGDVC++ V+RDG TG+V++ +DM +A++KLD+++FR + AY+RV+
Sbjct: 138 KDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
>sp|Q0VCY7|SRSF1_BOVIN Serine/arginine-rich splicing factor 1 OS=Bos taurus GN=SRSF1 PE=2
SV=1
Length = 248
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/179 (52%), Positives = 123/179 (68%), Gaps = 8/179 (4%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGV---SRRSEY-LLVTGLPSSASWQDL 124
D+DG+RLRVE GRG SRRSE ++V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 125 KDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 182
KDHMR AGDVC++ V+RDG TG+V++ +DM +A++KLD+++FR + AY+RV+
Sbjct: 138 KDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
>sp|Q7SXP4|SRS1A_DANRE Serine/arginine-rich splicing factor 1A OS=Danio rerio GN=srsf1a
PE=2 SV=2
Length = 257
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/189 (52%), Positives = 126/189 (66%), Gaps = 18/189 (9%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNLP DIR ++VED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ RDGY
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGY 76
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGV-------------SRRSEY-LLVTG 114
D+DG+RLRVE GRG G G G SRRSEY ++V+G
Sbjct: 77 DYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSG 136
Query: 115 LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NA 173
LP S SWQDLKDHMR AGDVC++ VFRDG TG+V++ +DM +A++KLD+++FR +
Sbjct: 137 LPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHE 193
Query: 174 FSRAYVRVR 182
AY+RV+
Sbjct: 194 GETAYIRVK 202
>sp|Q5PPI1|SRSF9_RAT Serine/arginine-rich splicing factor 9 OS=Rattus norvegicus
GN=Srsf9 PE=1 SV=1
Length = 221
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/201 (48%), Positives = 130/201 (64%), Gaps = 35/201 (17%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLK-----IPPRPPGYAFVEFEEARDAEDAIR 63
+YVGNLP D+RE+++EDLFYKYG I I+LK +P +AFV FE+ RDAEDAI
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVP-----FAFVRFEDPRDAEDAIY 70
Query: 64 GRDGYDFDGHRLRVEL--AHGGRGRSSSDRHSSHSSGRGRGVSRRSEY-LLVTGLPSSAS 120
GR+GYD+ RLRVE A+GGRG + R +RRS++ +LV+GLP S S
Sbjct: 71 GRNGYDYGQCRLRVEFPRAYGGRG-------GWPRASRNGPPTRRSDFRVLVSGLPPSGS 123
Query: 121 WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYV 179
WQDLKDHMR AGDVC++ V +DG G+V+Y +DM++A++KLDD++FR + +Y+
Sbjct: 124 WQDLKDHMREAGDVCYADVQKDG---MGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYI 180
Query: 180 RVREYDHRRDGSQSPSRGRSY 200
RV P RG SY
Sbjct: 181 RV-----------YPERGTSY 190
>sp|Q9D0B0|SRSF9_MOUSE Serine/arginine-rich splicing factor 9 OS=Mus musculus GN=Srsf9
PE=1 SV=1
Length = 222
Score = 160 bits (405), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 91/182 (50%), Positives = 123/182 (67%), Gaps = 24/182 (13%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLK-----IPPRPPGYAFVEFEEARDAEDAIR 63
+YVGNLP D+RE+++EDLFYKYG I I+LK +P +AFV FE+ RDAEDAI
Sbjct: 17 IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVP-----FAFVRFEDPRDAEDAIY 71
Query: 64 GRDGYDFDGHRLRVEL--AHGGRGRSSSDRHSSHSSGRGRGVSRRSEY-LLVTGLPSSAS 120
GR+GYD+ RLRVE +GGRG R +RRS++ +LV+GLP S S
Sbjct: 72 GRNGYDYGQCRLRVEFPRTYGGRG-------GWPRGARNGPPTRRSDFRVLVSGLPPSGS 124
Query: 121 WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYV 179
WQDLKDHMR AGDVC++ V +DG G+V+Y +DM++A++KLDD++FR + +Y+
Sbjct: 125 WQDLKDHMREAGDVCYADVQKDG---MGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYI 181
Query: 180 RV 181
RV
Sbjct: 182 RV 183
>sp|Q13242|SRSF9_HUMAN Serine/arginine-rich splicing factor 9 OS=Homo sapiens GN=SRSF9
PE=1 SV=1
Length = 221
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/180 (50%), Positives = 122/180 (67%), Gaps = 20/180 (11%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLK-----IPPRPPGYAFVEFEEARDAEDAIR 63
+YVGNLP D+RE+++EDLFYKYG I I+LK +P +AFV FE+ RDAEDAI
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVP-----FAFVRFEDPRDAEDAIY 70
Query: 64 GRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEY-LLVTGLPSSASWQ 122
GR+GYD+ RLRVE R+ R GR +RRS++ +LV+GLP S SWQ
Sbjct: 71 GRNGYDYGQCRLRVEFP-----RTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQ 125
Query: 123 DLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRV 181
DLKDHMR AGDVC++ V +DG G+V+Y +DM++A++KLDD++FR + +Y+RV
Sbjct: 126 DLKDHMREAGDVCYADVQKDG---VGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV 182
>sp|Q8VE97|SRSF4_MOUSE Serine/arginine-rich splicing factor 4 OS=Mus musculus GN=Srsf4
PE=2 SV=1
Length = 489
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 100/174 (57%), Gaps = 24/174 (13%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+Y+G L RER+VE F YG I +DLK GY FVEF++ RDA+DA+ +G
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKN-----GYGFVEFDDLRDADDAVYELNGK 58
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGR--------GR---GVSRRSEY-LLVTGLP 116
D G R+ VE A G R R S+ SGR GR G R+EY L+V L
Sbjct: 59 DLCGERVIVEHARGPR------RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLS 112
Query: 117 SSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 170
S SWQDLKD+MR+AG+V ++ + G G++++ +Y DMK A++KLD +E
Sbjct: 113 SRCSWQDLKDYMRQAGEVTYADAHK-GRKNEGVIEFVSYSDMKRALEKLDGTEV 165
>sp|Q13247|SRSF6_HUMAN Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6
PE=1 SV=2
Length = 344
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 100/174 (57%), Gaps = 18/174 (10%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+Y+G L ++RE++++ F YG + +DLK GY FVEFE++RDA+DA+ +G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLK-----NGYGFVEFEDSRDADDAVYELNGK 58
Query: 69 DFDGHRLRVELAHGGR----------GRSSSDRHSSHSSGRGR-GVSRRSEY-LLVTGLP 116
+ G R+ VE A G R S +SGR + G R+EY L+V L
Sbjct: 59 ELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLS 118
Query: 117 SSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 170
S SWQDLKD MR+AG+V ++ ++ + G++++ +Y DMK A+ KLD +E
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERT-NEGVIEFRSYSDMKRALDKLDGTEI 171
>sp|Q3B7L6|SRSF6_BOVIN Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6 PE=2
SV=1
Length = 345
Score = 104 bits (259), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 100/174 (57%), Gaps = 18/174 (10%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+Y+G L ++RE++++ F YG + IDLK GY FVEFE++RDA+DA+ +G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLGIDLK-----NGYGFVEFEDSRDADDAVYELNGK 58
Query: 69 DFDGHRLRVELAHGGR----------GRSSSDRHSSHSSGRGR-GVSRRSEY-LLVTGLP 116
+ G R+ VE A G R S +SGR + G R+E+ L+V L
Sbjct: 59 ELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLS 118
Query: 117 SSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 170
S SWQDLKD MR+AG+V ++ ++ + G++++ +Y DMK A+ KLD +E
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERT-NEGVIEFRSYSDMKRALDKLDGTEI 171
>sp|P26686|SRR55_DROME Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1
SV=4
Length = 376
Score = 104 bits (259), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 99/182 (54%), Gaps = 26/182 (14%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVG LP +RER++E F YG I +K GY FVEFE+ RDA+DA+ +G
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIK-----NGYGFVEFEDYRDADDAVYELNGK 60
Query: 69 DFDGHRLRVELAHG-GRGRS------------------SSDRHSSHSSGRGRGVSRRSEY 109
+ G R+ VE A G RG + ++++ + S G R+EY
Sbjct: 61 ELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEY 120
Query: 110 -LLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS 168
L+V L S SWQDLKD+MR+AG+V ++ + G+V++ + DMK AI+KLDD+
Sbjct: 121 RLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQ-RRNEGVVEFASLSDMKTAIEKLDDT 179
Query: 169 EF 170
E
Sbjct: 180 EL 181
>sp|Q09167|SRSF5_RAT Serine/arginine-rich splicing factor 5 OS=Rattus norvegicus
GN=Srsf5 PE=2 SV=1
Length = 269
Score = 94.7 bits (234), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 90/175 (51%), Gaps = 24/175 (13%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+++G L RE++VE F YG I IDLK G+ FVEFE+ RDA+DA+ Y
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAV-----Y 55
Query: 69 DFDGHRL---RVELAHGGRGRSS-------SDRHSS---HSSGRGRGVSRRSEYLLVTGL 115
+ DG L RV + H SDR SS + R R L+V L
Sbjct: 56 ELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENL 115
Query: 116 PSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 170
S SWQDLKD MR+AG+V F+ R G+V++ +Y D+K+AI+KL E
Sbjct: 116 SSRVSWQDLKDFMRQAGEVTFADAHRP-KLNEGVVEFASYGDLKNAIEKLSGKEI 169
>sp|O35326|SRSF5_MOUSE Serine/arginine-rich splicing factor 5 OS=Mus musculus GN=Srsf5
PE=1 SV=2
Length = 269
Score = 94.7 bits (234), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 90/175 (51%), Gaps = 24/175 (13%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+++G L RE++VE F YG I IDLK G+ FVEFE+ RDA+DA+ Y
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAV-----Y 55
Query: 69 DFDGHRL---RVELAHGGRGRSS-------SDRHSS---HSSGRGRGVSRRSEYLLVTGL 115
+ DG L RV + H SDR SS + R R L+V L
Sbjct: 56 ELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENL 115
Query: 116 PSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 170
S SWQDLKD MR+AG+V F+ R G+V++ +Y D+K+AI+KL E
Sbjct: 116 SSRVSWQDLKDFMRQAGEVTFADAHRP-KLNEGVVEFASYGDLKNAIEKLSGKEI 169
>sp|Q13243|SRSF5_HUMAN Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5
PE=1 SV=1
Length = 272
Score = 94.7 bits (234), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 90/175 (51%), Gaps = 24/175 (13%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+++G L RE++VE F YG I IDLK G+ FVEFE+ RDA+DA+ Y
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAV-----Y 55
Query: 69 DFDGHRL---RVELAHGGRGRSS-------SDRHSS---HSSGRGRGVSRRSEYLLVTGL 115
+ DG L RV + H SDR SS + R R L+V L
Sbjct: 56 ELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENL 115
Query: 116 PSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 170
S SWQDLKD MR+AG+V F+ R G+V++ +Y D+K+AI+KL E
Sbjct: 116 SSRVSWQDLKDFMRQAGEVTFADAHRP-KLNEGVVEFASYGDLKNAIEKLSGKEI 169
>sp|P78814|SRP2_SCHPO Pre-mRNA-splicing factor srp2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=srp2 PE=1 SV=2
Length = 365
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 84/159 (52%), Gaps = 10/159 (6%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
L+VG +P ++ D F YG I L G+ FVE E+ARDA D + G
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLMN-----GFGFVEVEDARDARDIVNDFQGK 60
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSS-GRGRGVSRRSEYLLVTGLPSSASWQDLKDH 127
+F G R+ VE A G R R + R S+ S R R R L+V L SWQDLKD
Sbjct: 61 EFMGSRIVVEPARGERRRRENFRESAASKYPRPRRTGFR---LIVENLSEDVSWQDLKDV 117
Query: 128 MRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 166
MR+AG+ F+ R+ G G+V+++ +DM++A+ L+
Sbjct: 118 MRKAGEPTFTDAHRENPG-AGVVEFSTEEDMRNALTSLN 155
>sp|P92964|RSP31_ARATH Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana
GN=RSP31 PE=1 SV=2
Length = 264
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66
R ++VGN + R+ ++E LF KYG + +D+K GYAFV FE+ RDAEDAIR D
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKS-----GYAFVYFEDERDAEDAIRKLD 56
Query: 67 GYDF--DGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGL-PSSASWQD 123
+ F + RL VE A G RGR D + + + ++ L V P D
Sbjct: 57 NFPFGYEKRRLSVEWAKGERGRPRGDAKAPSN-------LKPTKTLFVINFDPIRTKEHD 109
Query: 124 LKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 183
++ H G V ++ R+ S V + +D A++ S+ + +++
Sbjct: 110 IEKHFEPYGKVTNVRIRRNFS----FVQFETQEDATKALEATQRSKILDRVVSVEYALKD 165
Query: 184 YDHR--RDGSQSPSRGRS--YSR------GRSESRSRSRSRGRSYSRSRSQS----KSPK 229
D R R+G +SP R S Y R GR S + R Y R+RS K P
Sbjct: 166 DDERDDRNGGRSPRRSLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGPA 225
Query: 230 AKSSRRSPDRSR 241
A RRSPD R
Sbjct: 226 AYERRRSPDYGR 237
>sp|Q23120|RSP2_CAEEL Probable splicing factor, arginine/serine-rich 2 OS=Caenorhabditis
elegans GN=rsp-2 PE=3 SV=1
Length = 281
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 37/180 (20%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+Y+G LP +R+VE F YG ++ + +K G+ FV+F++ RDA+DA+ +G
Sbjct: 4 VYIGRLPNRASDRDVEHFFRGYGKLSDVIMK-----NGFGFVDFQDQRDADDAVHDLNGK 58
Query: 69 DFDGHRLRVEL------------AHGGRGRSS----------SDRHSSHSSGRGRGVSRR 106
+ G R+ +E G RGR S+R+S S R R
Sbjct: 59 ELCGERVILEFPRRKVGYNEERSGSGFRGREPTFRKGGERQFSNRYSRPCSTRFR----- 113
Query: 107 SEYLLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 165
L++ L + SWQD+KDH+R+ G + +S+ + IV +T++DD++ A+ KL
Sbjct: 114 ---LVIDNLSTRYSWQDIKDHIRKLGIEPTYSEAHKRNV-NQAIVCFTSHDDLRDAMNKL 169
>sp|P92965|RSP40_ARATH Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana
GN=RSP40 PE=1 SV=2
Length = 350
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 15/187 (8%)
Query: 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66
+ ++ GN D RE ++E LF KYG + +D+K G+AFV E+ RDAEDAIR D
Sbjct: 2 KPVFCGNFEYDAREGDLERLFRKYGKVERVDMKA-----GFAFVYMEDERDAEDAIRALD 56
Query: 67 GYDF--DGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSAS-WQD 123
++F G RLRVE RG D+ S S R R S+ L V + + +D
Sbjct: 57 RFEFGRKGRRLRVEWTKSERG---GDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRD 113
Query: 124 LKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 183
L+ H G + ++ R+ + Y +D A+ ++S+ + V++
Sbjct: 114 LEKHFEPYGKIVNVRIRRN----FAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKD 169
Query: 184 YDHRRDG 190
D R +G
Sbjct: 170 DDARGNG 176
>sp|Q8BL97|SRSF7_MOUSE Serine/arginine-rich splicing factor 7 OS=Mus musculus GN=Srsf7
PE=1 SV=1
Length = 267
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNL + E+E F YGP+ + I PPG+AFVEFE+ RDAEDA+RG DG
Sbjct: 42 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGK 99
Query: 69 DFDGHRLRVELAHGGRGRSSSDR 91
G R+RVEL+ G RS DR
Sbjct: 100 VICGSRVRVELSTGMPRRSRFDR 122
>sp|Q02427|RBP1_DROME RNA-binding protein 1 OS=Drosophila melanogaster GN=Rbp1 PE=2
SV=3
Length = 144
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNL + E+E F KYGP+ ++ + PPG+AFVEFE+ RDAEDA R DG
Sbjct: 13 VYVGNLGSSASKHEIEGAFAKYGPLRNV--WVARNPPGFAFVEFEDRRDAEDATRALDGT 70
Query: 69 DFDGHRLRVEL 79
G R+RVE+
Sbjct: 71 RCCGTRIRVEM 81
>sp|Q16629|SRSF7_HUMAN Serine/arginine-rich splicing factor 7 OS=Homo sapiens GN=SRSF7
PE=1 SV=1
Length = 238
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNL + E+E F YGP+ + I PPG+AFVEFE+ RDAEDA+RG DG
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 69 DFDGHRLRVELAHGGRGRSSSDR 91
G R+RVEL+ G RS DR
Sbjct: 71 VICGSRVRVELSTGMPRRSRFDR 93
>sp|Q01560|NOP3_YEAST Nucleolar protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NPL3 PE=1 SV=1
Length = 414
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 29/165 (17%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
L+V P D++E E+ ++F +GP+ + + G+AFVEFEEA A AI G
Sbjct: 127 LFVRPFPLDVQESELNEIFGPFGPMKEVKILN-----GFAFVEFEEAESAAKAIEEVHGK 181
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHM 128
F L V +S + R R + + LP SWQDLKD
Sbjct: 182 SFANQPLEV-------------VYSKLPAKRYR--------ITMKNLPEGCSWQDLKDLA 220
Query: 129 RRAG-DVCFSQV-FRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 171
R + FS V RD G TG +++ + + + A+++L++ EFR
Sbjct: 221 RENSLETTFSSVNTRDFDG-TGALEFPSEEILVEALERLNNIEFR 264
>sp|Q3T106|SRSF7_BOVIN Serine/arginine-rich splicing factor 7 OS=Bos taurus GN=SRSF7
PE=2 SV=1
Length = 235
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNL + E+E F YGP+ + I PPG+AFVEFE+ RDAEDA+RG DG
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 69 DFDGHRLRVELAHGGRGRSSSDR 91
G R+RVEL+ G RS DR
Sbjct: 71 VICGSRVRVELSTGMPRRSRFDR 93
>sp|P84104|SRSF3_MOUSE Serine/arginine-rich splicing factor 3 OS=Mus musculus GN=Srsf3
PE=1 SV=1
Length = 164
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNL + + E+E F YGP+ + + PPG+AFVEFE+ RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 DFDGHRLRVELAHG 82
G R+RVEL++G
Sbjct: 70 TLCGCRVRVELSNG 83
>sp|P84103|SRSF3_HUMAN Serine/arginine-rich splicing factor 3 OS=Homo sapiens GN=SRSF3
PE=1 SV=1
Length = 164
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNL + + E+E F YGP+ + + PPG+AFVEFE+ RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 DFDGHRLRVELAHG 82
G R+RVEL++G
Sbjct: 70 TLCGCRVRVELSNG 83
>sp|Q3SZR8|SRSF3_BOVIN Serine/arginine-rich splicing factor 3 OS=Bos taurus GN=SRSF3
PE=2 SV=1
Length = 164
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNL + + E+E F YGP+ + + PPG+AFVEFE+ RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 DFDGHRLRVELAHG 82
G R+RVEL++G
Sbjct: 70 TLCGCRVRVELSNG 83
>sp|Q18409|RSP6_CAEEL Probable splicing factor, arginine/serine-rich 6
OS=Caenorhabditis elegans GN=rsp-6 PE=3 SV=1
Length = 179
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVG LP D +E+E++F ++G I + + RPPG+AFVE+++ RDAEDA+R DG
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKV--WVARRPPGFAFVEYDDVRDAEDAVRALDGS 62
Query: 69 DFDGHRLRVELA 80
G R RVEL+
Sbjct: 63 RICGVRARVELS 74
>sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1
Length = 694
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 22/174 (12%)
Query: 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP----RPPGYAFVEFEEARDAE 59
R S+TL V NL E +++LF K +K+P RP GYAFVEF A DA+
Sbjct: 458 RESKTLIVNNLSYAASEETLQELFKK-----ATSIKMPQNNQGRPKGYAFVEFPTAEDAK 512
Query: 60 DAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSA 119
+A+ + + +G +R+E SS + + RG G +++S+ L V GL
Sbjct: 513 EALNSCNNTEIEGRAIRLEF-------SSPSWQKGNMNARG-GFNQQSKTLFVRGLSEDT 564
Query: 120 SWQDLKDHMRRAGDVCFSQVFRDGSGTT---GIVDYTNYDDMKHAIKKLDDSEF 170
+ + L++ G + V +G++ G VD+++ +D K A + ++D E
Sbjct: 565 TEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEI 616
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 79/167 (47%), Gaps = 11/167 (6%)
Query: 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63
R +RTL+V NLP + E E++++F + + L G A++EF+ +AE A+
Sbjct: 368 RDARTLFVKNLPYRVTEDEMKNVFENALEV-RLVLNKEGSSKGMAYIEFKTEAEAEKALE 426
Query: 64 GRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQD 123
+ G + DG + ++ + S S +G G R S+ L+V L +AS +
Sbjct: 427 EKQGTEVDGRAMVIDY---------TGEKSQQESQKGGG-ERESKTLIVNNLSYAASEET 476
Query: 124 LKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 170
L++ ++A + Q + V++ +D K A+ +++E
Sbjct: 477 LQELFKKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEI 523
>sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/serine-rich 5
OS=Caenorhabditis elegans GN=rsp-5 PE=3 SV=3
Length = 208
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 7/76 (9%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
LY+G +P + RER+VE YG I +I +K G+AFV+FE++RDAEDA DG
Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISMKY-----GFAFVDFEDSRDAEDACHDLDGK 58
Query: 69 DFDG--HRLRVELAHG 82
+G RL VE+A G
Sbjct: 59 TMEGSSMRLVVEMARG 74
>sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1 OS=Caenorhabditis
elegans GN=rsp-1 PE=3 SV=1
Length = 312
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 38/189 (20%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+Y+G L + E+++E F YG I + LK G+ FVEF++ RDAEDA+ +G
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN-----GFGFVEFDDKRDAEDAVHDLNGK 59
Query: 69 DFDGHRLRVELAHGGRGRSSSD----------RHSSHSSGR----------GRGVSRR-S 107
+ G R+ ++ + G R SS+S G RG RR S
Sbjct: 60 ELGGERVILDYSKPRGGGGDRGGFGGGGRGGARVSSYSGGGGGGRDRFDRYDRGPPRRES 119
Query: 108 EY---------LLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDD 157
Y ++V L S SWQDLKD +RR G + +++ + ++ + D
Sbjct: 120 RYGRPYSTRHRVVVENLSSRISWQDLKDQVRRQGVEPTYAEAHK--RPNEALLCFATPSD 177
Query: 158 MKHAIKKLD 166
+K I+K D
Sbjct: 178 LKRCIEKCD 186
>sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis
thaliana GN=RS2Z32 PE=1 SV=1
Length = 284
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
LYVG L R R++E LF +YG + +D+K YAFVEF + RDA+DA DG
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR-----DYAFVEFSDPRDADDARYYLDGR 67
Query: 69 DFDGHRLRVELAHG 82
DFDG R+ VE + G
Sbjct: 68 DFDGSRITVEASRG 81
>sp|Q8VYA5|RSZ33_ARATH Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis
thaliana GN=RS2Z33 PE=1 SV=1
Length = 290
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
LYVG L R R++E LF +YG + +D+K YAFVEF + RDA+DA DG
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR-----DYAFVEFGDPRDADDARHYLDGR 67
Query: 69 DFDGHRLRVELAHG 82
DFDG R+ VE + G
Sbjct: 68 DFDGSRITVEFSRG 81
>sp|P92966|RSP41_ARATH Arginine/serine-rich-splicing factor RSP41 OS=Arabidopsis
thaliana GN=RSP41 PE=1 SV=2
Length = 356
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 7/78 (8%)
Query: 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66
+ ++ GN D RE ++E LF KYG + +D+K G+AFV E+ RDAEDAIR D
Sbjct: 2 KPVFCGNFEYDARESDLERLFRKYGKVERVDMKA-----GFAFVYMEDERDAEDAIRALD 56
Query: 67 GYDF--DGHRLRVELAHG 82
+++ G RLRVE
Sbjct: 57 RFEYGRTGRRLRVEWTKN 74
>sp|Q9SJA6|RZ22A_ARATH Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis
thaliana GN=RSZ22A PE=1 SV=1
Length = 196
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 6/73 (8%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNL + ERE+ED F +G I + + RPPGYAF++FE++RDA DAIR DG
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSV--WVARRPPGYAFLDFEDSRDARDAIREVDG- 60
Query: 69 DFDGHRLRVELAH 81
+ RVE +H
Sbjct: 61 ---KNGWRVEQSH 70
>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=1 SV=1
Length = 361
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 29/163 (17%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
L++GNLP + E+E+ LF +YG + D+ Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHM 128
G + VE A + ++S+ H V + + + Q+L+
Sbjct: 59 KLHGVNINVE-ASKNKSKASTKLH-------------------VGNISPTCTNQELRAKF 98
Query: 129 RRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 171
G V + +D V +D AI+ LD++EF+
Sbjct: 99 EEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAI 62
S+AS L+VGN+ +E+ F +YGP+ D+ YAFV E A DA +AI
Sbjct: 74 SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYDFDGHRLRVELA 80
RG D +F G R+ V+L+
Sbjct: 129 RGLDNTEFQGKRMHVQLS 146
>sp|O81126|RZP22_ARATH Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis
thaliana GN=RSZ22 PE=1 SV=1
Length = 200
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNL + ERE+ED F +G + + + RPPGYAF++FE+ RDA DAIR DG
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSV--WVARRPPGYAFLDFEDPRDARDAIRALDG- 60
Query: 69 DFDGHRLRVELAH 81
+ RVE +H
Sbjct: 61 ---KNGWRVEQSH 70
>sp|P38922|HRB1_YEAST Protein HRB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=HRB1 PE=1 SV=2
Length = 454
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 18/171 (10%)
Query: 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPP--GYAFVEFEEARDAEDAIR 63
S +++VGNL D ++ + F + G + D+ I R G VEF + D + AIR
Sbjct: 160 SNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADI-ITSRGHHRGMGTVEFTNSDDVDRAIR 218
Query: 64 GRDGYDFDGHRLRVEL-----AHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSS 118
DG F ++ V ++ + R + DR + R++ ++V LP+S
Sbjct: 219 QYDGAFFMDRKIFVRQDNPPPSNNIKERKALDRGELRHN-------RKTHEVIVKNLPAS 271
Query: 119 ASWQDLKDHMRRAGDVCFSQVFRDGSGT---TGIVDYTNYDDMKHAIKKLD 166
+WQ LKD + G+V + V DG G +G V + + D+ AI+K +
Sbjct: 272 VNWQALKDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHRAIEKYN 322
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 17/185 (9%)
Query: 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPR--PPGYAFVEFEEARDAED 60
+R + + V NLP + + ++D+F + G +AH D+++ G V F + +D
Sbjct: 257 NRKTHEVIVKNLPASVNWQALKDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHR 316
Query: 61 AIRGRDGYDFDGHRLRVELAHGGRGRSSSD------------RHSSHSSGRGRGVSRRSE 108
AI +GY +G+ L V+ S D + + G R+
Sbjct: 317 AIEKYNGYSIEGNVLDVKSKESVHNHSDGDDVDIPMDDSPVNEEARKFTENVVGGGERNR 376
Query: 109 YLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGT-TGI--VDYTNYDDMKHAIKKL 165
+ + LP S + DL D G V +++ D G TGI V+Y N DD I++L
Sbjct: 377 LIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEYDNVDDADVCIERL 436
Query: 166 DDSEF 170
++ +
Sbjct: 437 NNYNY 441
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPR--PPGYAFVEFEEARDAEDAIR 63
+R +Y NLP + ++ DLF G + + +L+ + P G A VE++ DA+ I
Sbjct: 375 NRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEYDNVDDADVCIE 434
Query: 64 GRDGYDFDGHRLRVELA 80
+ Y++ G L + A
Sbjct: 435 RLNNYNYGGCDLDISYA 451
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=4 SV=3
Length = 464
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 6/173 (3%)
Query: 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPR--PPGYAFVEFEEARDAED 60
++ R +YVGNL +R E+++ + G + + ++ P G A +E+ A +A
Sbjct: 73 TQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEART 132
Query: 61 AIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSAS 120
AI+ F G + + R S S +S G+ S L V LP +
Sbjct: 133 AIKTLSNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKD-SEPDRQLFVGNLPYNVR 191
Query: 121 WQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEF 170
WQDLKD R+AG V + + + G GIV ++ + HAI+ L +++F
Sbjct: 192 WQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDF 244
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP--RPPGYAFVEFEEARDAEDAI 62
S +YVGNLP +R + DLF G + + P R G+ V+FE DA +I
Sbjct: 308 CSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSI 367
Query: 63 RGRDGYDFDGHRLRVELAH 81
+GY + G L++ AH
Sbjct: 368 EKLNGYRYGGRPLQLSYAH 386
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 86/199 (43%), Gaps = 37/199 (18%)
Query: 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP--RPPGYAFVEFEEARDAED 60
S R L+VGNLP ++R ++++DLF + G + D+++ R G V ++A
Sbjct: 175 SEPDRQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMH 234
Query: 61 AIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRG----RGVSRRSEYLLVTG-- 114
AI+ DF G L V L +S +S+H +G ++ S YL + G
Sbjct: 235 AIQMLHNTDFMGRTLEVRLDRFAHHKSKP--YSTHGNGYTFPAEMQMTTSSTYLPMLGAN 292
Query: 115 ------------------------LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTT--- 147
LP + S ++L D G V +++ + +G +
Sbjct: 293 TQVEDLVYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGF 352
Query: 148 GIVDYTNYDDMKHAIKKLD 166
G+V + N +D +I+KL+
Sbjct: 353 GVVQFENENDAASSIEKLN 371
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 98 GRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTT---GIVDYTN 154
G G+ +++ + V L W +LK+ M + G+V ++ +G + I++Y+
Sbjct: 67 GNGQKYTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYST 126
Query: 155 YDDMKHAIKKLDDSEF 170
++ + AIK L + +F
Sbjct: 127 AEEARTAIKTLSNQKF 142
>sp|Q9BQ04|RBM4B_HUMAN RNA-binding protein 4B OS=Homo sapiens GN=RBM4B PE=1 SV=1
Length = 359
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 29/163 (17%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
L++GNLP + E+E+ LF +YG + D+ Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHM 128
G + VE A + ++S+ H V + + + Q+L+
Sbjct: 59 KLHGVNINVE-ASKNKSKASTKLH-------------------VGNISPTCTNQELRAKF 98
Query: 129 RRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 171
G V + +D V +D AI+ LD++EF+
Sbjct: 99 EEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAI 62
S+AS L+VGN+ +E+ F +YGP+ D+ YAFV E A DA +AI
Sbjct: 74 SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYDFDGHRLRVELA 80
RG D +F G R+ V+L+
Sbjct: 129 RGLDNTEFQGKRMHVQLS 146
>sp|Q64LC9|RBM4B_RAT RNA-binding protein 4B OS=Rattus norvegicus GN=Rbm4b PE=2 SV=2
Length = 357
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 29/163 (17%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
L++GNLP + E+E+ LF +YG + D+ Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHM 128
G + VE A + ++S+ H V + + + Q+L+
Sbjct: 59 KLHGVNINVE-ASKNKSKASTKLH-------------------VGNISPTCTNQELRAKF 98
Query: 129 RRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 171
G V + +D V +D AI+ LD++EF+
Sbjct: 99 EEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAI 62
S+AS L+VGN+ +E+ F +YGP+ D+ YAFV E A DA +AI
Sbjct: 74 SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYDFDGHRLRVELA 80
RG D +F G R+ V+L+
Sbjct: 129 RGLDNTEFQGKRMHVQLS 146
>sp|Q8VE92|RBM4B_MOUSE RNA-binding protein 4B OS=Mus musculus GN=Rbm4b PE=1 SV=1
Length = 357
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 29/163 (17%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
L++GNLP + E+E+ LF +YG + D+ Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHM 128
G + VE A + ++S+ H V + + + Q+L+
Sbjct: 59 KLHGVNINVE-ASKNKSKASTKLH-------------------VGNISPTCTNQELRAKF 98
Query: 129 RRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 171
G V + +D V +D AI+ LD++EF+
Sbjct: 99 EEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAI 62
S+AS L+VGN+ +E+ F +YGP+ D+ YAFV E A DA +AI
Sbjct: 74 SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYDFDGHRLRVELA 80
RG D +F G R+ V+L+
Sbjct: 129 RGLDNTEFQGKRMHVQLS 146
>sp|Q9BDY9|RBM4_RABIT RNA-binding protein 4 OS=Oryctolagus cuniculus GN=RBM4 PE=2 SV=1
Length = 359
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 29/163 (17%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
L++GNLP + E+E+ LF +YG + D+ Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHM 128
G + VE A + ++S+ H V + + + Q+L+
Sbjct: 59 KLHGVNINVE-ASKNKSKASTKLH-------------------VGNISPTCTNQELRAKF 98
Query: 129 RRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 171
G V + +D V +D AI+ LD++EF+
Sbjct: 99 EEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAI 62
S+AS L+VGN+ +E+ F +YGP+ D+ YAFV E A DA +AI
Sbjct: 74 SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDI-----VKDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYDFDGHRLRVELA 80
RG D +F G R+ V+L+
Sbjct: 129 RGLDNTEFQGKRMHVQLS 146
>sp|Q06AT9|RBM4B_PIG RNA-binding protein 4B OS=Sus scrofa GN=RBM4B PE=2 SV=1
Length = 359
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 29/163 (17%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
L++GNLP + E+E+ LF +YG + D+ Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHM 128
G + VE A + ++S+ H V + + + Q+L+
Sbjct: 59 KLHGVNINVE-ASKNKSKASTKLH-------------------VGNISPTCTNQELRAKF 98
Query: 129 RRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 171
G V + +D V +D AI+ LD++EF+
Sbjct: 99 EEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAI 62
S+AS L+VGN+ +E+ F +YGP+ D+ YAFV E A DA +AI
Sbjct: 74 SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYDFDGHRLRVELA 80
RG D +F G R+ V+L+
Sbjct: 129 RGLDNTEFQGKRMHVQLS 146
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,487,493
Number of Sequences: 539616
Number of extensions: 4688097
Number of successful extensions: 37166
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 859
Number of HSP's that attempted gapping in prelim test: 18917
Number of HSP's gapped (non-prelim): 9025
length of query: 276
length of database: 191,569,459
effective HSP length: 116
effective length of query: 160
effective length of database: 128,974,003
effective search space: 20635840480
effective search space used: 20635840480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)