Query 023820
Match_columns 276
No_of_seqs 317 out of 2287
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 06:53:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023820.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023820hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 6.1E-32 1.3E-36 226.7 21.4 152 4-173 105-263 (346)
2 KOG0105 Alternative splicing f 100.0 2.5E-29 5.5E-34 183.6 20.8 182 1-187 1-192 (241)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.1E-29 4.5E-34 215.9 20.1 160 5-184 2-168 (352)
4 TIGR01645 half-pint poly-U bin 100.0 2.6E-29 5.6E-34 221.5 20.5 170 5-185 106-282 (612)
5 KOG0148 Apoptosis-promoting RN 100.0 2.7E-29 5.8E-34 193.9 14.6 168 7-179 63-234 (321)
6 TIGR01622 SF-CC1 splicing fact 100.0 2.8E-28 6E-33 215.8 21.4 171 4-185 87-264 (457)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.2E-27 2.6E-32 211.6 21.5 160 5-173 1-162 (481)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3E-27 6.5E-32 202.5 22.9 177 5-185 88-347 (352)
9 TIGR01628 PABP-1234 polyadenyl 100.0 3.6E-27 7.8E-32 213.4 20.0 151 7-173 1-157 (562)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.3E-26 2.9E-31 205.0 21.6 169 4-174 273-465 (481)
11 KOG0109 RNA-binding protein LA 100.0 9E-28 1.9E-32 187.3 11.2 144 7-179 3-146 (346)
12 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.3E-26 4.9E-31 206.3 21.6 174 3-184 172-372 (509)
13 TIGR01648 hnRNP-R-Q heterogene 99.9 5.2E-26 1.1E-30 200.4 22.6 173 6-186 58-306 (578)
14 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.1E-25 2.5E-30 201.7 21.4 171 5-175 294-494 (509)
15 TIGR01628 PABP-1234 polyadenyl 99.9 4E-26 8.6E-31 206.6 18.0 170 5-174 177-355 (562)
16 KOG0131 Splicing factor 3b, su 99.9 1.6E-25 3.5E-30 163.4 13.2 160 4-180 7-174 (203)
17 KOG0145 RNA-binding protein EL 99.9 1.8E-25 3.9E-30 171.9 13.7 162 5-186 40-208 (360)
18 KOG0117 Heterogeneous nuclear 99.9 5.6E-25 1.2E-29 181.0 16.5 168 6-177 83-325 (506)
19 TIGR01622 SF-CC1 splicing fact 99.9 2E-24 4.4E-29 191.2 21.2 172 6-177 186-442 (457)
20 KOG0144 RNA-binding protein CU 99.9 1.9E-25 4.1E-30 183.0 13.0 168 5-190 33-209 (510)
21 KOG0127 Nucleolar protein fibr 99.9 7E-24 1.5E-28 178.5 16.1 177 6-186 5-195 (678)
22 KOG0145 RNA-binding protein EL 99.9 1.6E-23 3.5E-28 161.3 16.3 170 6-175 127-350 (360)
23 KOG0127 Nucleolar protein fibr 99.9 1.8E-22 3.8E-27 170.1 18.9 172 6-177 117-372 (678)
24 KOG0106 Alternative splicing f 99.9 2.3E-23 5.1E-28 159.8 11.5 162 7-177 2-165 (216)
25 KOG0124 Polypyrimidine tract-b 99.9 8.1E-24 1.7E-28 170.2 7.9 162 7-175 114-282 (544)
26 KOG0107 Alternative splicing f 99.9 2.9E-22 6.3E-27 145.6 14.6 75 107-186 10-84 (195)
27 KOG0123 Polyadenylate-binding 99.9 1.1E-21 2.3E-26 165.8 16.6 140 7-173 2-143 (369)
28 KOG4206 Spliceosomal protein s 99.9 9.1E-21 2E-25 144.1 16.2 171 1-172 4-210 (221)
29 KOG0110 RNA-binding protein (R 99.9 1.6E-21 3.4E-26 169.3 13.5 158 7-173 516-683 (725)
30 KOG0107 Alternative splicing f 99.9 1.2E-20 2.6E-25 137.2 15.5 80 4-85 8-87 (195)
31 KOG4207 Predicted splicing fac 99.9 1.5E-20 3.3E-25 140.1 13.4 80 5-84 12-94 (256)
32 KOG0148 Apoptosis-promoting RN 99.8 2.2E-20 4.9E-25 144.7 11.1 136 1-187 1-142 (321)
33 KOG0123 Polyadenylate-binding 99.8 8.7E-20 1.9E-24 154.3 15.4 158 4-172 74-235 (369)
34 KOG0147 Transcriptional coacti 99.8 3.8E-20 8.1E-25 156.6 12.8 171 7-178 279-523 (549)
35 TIGR01645 half-pint poly-U bin 99.8 1.9E-18 4E-23 153.1 21.3 78 5-82 203-283 (612)
36 KOG4676 Splicing factor, argin 99.8 5.5E-21 1.2E-25 155.1 4.7 166 4-171 5-214 (479)
37 KOG0147 Transcriptional coacti 99.8 1.4E-20 3E-25 159.2 6.2 169 4-177 177-352 (549)
38 PLN03134 glycine-rich RNA-bind 99.8 6.7E-19 1.5E-23 130.1 13.1 83 4-86 32-117 (144)
39 KOG1457 RNA binding protein (c 99.8 2.5E-18 5.5E-23 129.9 14.2 167 6-172 34-275 (284)
40 KOG0144 RNA-binding protein CU 99.8 8.2E-19 1.8E-23 144.3 12.2 76 6-81 124-204 (510)
41 KOG4205 RNA-binding protein mu 99.8 1E-18 2.2E-23 142.8 12.4 160 1-174 1-167 (311)
42 KOG0113 U1 small nuclear ribon 99.8 2.3E-17 4.9E-22 129.9 15.2 87 3-89 98-187 (335)
43 KOG0146 RNA-binding protein ET 99.8 1E-17 2.3E-22 129.8 11.9 169 5-173 18-355 (371)
44 KOG1548 Transcription elongati 99.8 1.1E-16 2.4E-21 128.5 17.3 177 4-180 132-349 (382)
45 KOG4212 RNA-binding protein hn 99.8 8.4E-17 1.8E-21 132.8 16.9 169 4-172 42-283 (608)
46 KOG4211 Splicing factor hnRNP- 99.7 7E-17 1.5E-21 135.3 15.7 157 6-172 10-171 (510)
47 KOG0121 Nuclear cap-binding pr 99.7 6.9E-18 1.5E-22 116.5 7.0 80 4-83 34-116 (153)
48 TIGR01648 hnRNP-R-Q heterogene 99.7 2.8E-17 6.1E-22 145.5 12.3 126 5-135 232-369 (578)
49 KOG4207 Predicted splicing fac 99.7 7.3E-17 1.6E-21 120.6 12.3 71 109-183 15-89 (256)
50 PLN03120 nucleic acid binding 99.7 3.9E-17 8.4E-22 129.0 11.2 79 6-85 4-82 (260)
51 PF00076 RRM_1: RNA recognitio 99.7 2.1E-17 4.6E-22 107.6 6.9 68 9-76 1-70 (70)
52 KOG0110 RNA-binding protein (R 99.7 1.8E-16 3.9E-21 138.2 14.0 175 4-181 383-596 (725)
53 KOG1190 Polypyrimidine tract-b 99.7 6.4E-16 1.4E-20 126.6 15.7 166 6-173 297-480 (492)
54 PLN03121 nucleic acid binding 99.7 3.8E-16 8.2E-21 121.4 13.0 81 5-86 4-84 (243)
55 KOG0114 Predicted RNA-binding 99.7 6.7E-16 1.4E-20 102.7 8.8 78 5-82 17-94 (124)
56 KOG0122 Translation initiation 99.6 1.1E-15 2.4E-20 117.3 9.2 80 4-83 187-269 (270)
57 COG0724 RNA-binding proteins ( 99.6 6.6E-15 1.4E-19 122.0 14.8 139 6-144 115-262 (306)
58 KOG0120 Splicing factor U2AF, 99.6 1.2E-15 2.6E-20 131.0 10.3 180 5-184 288-494 (500)
59 PF14259 RRM_6: RNA recognitio 99.6 1.1E-15 2.4E-20 99.4 6.8 68 9-76 1-70 (70)
60 TIGR01659 sex-lethal sex-letha 99.6 5E-15 1.1E-19 124.9 12.1 82 5-86 192-278 (346)
61 KOG0125 Ataxin 2-binding prote 99.6 1.7E-15 3.7E-20 120.9 8.5 83 4-86 94-177 (376)
62 KOG0130 RNA-binding protein RB 99.6 2.1E-15 4.5E-20 105.2 6.9 79 7-85 73-154 (170)
63 KOG1190 Polypyrimidine tract-b 99.6 8.5E-15 1.8E-19 120.1 10.7 175 3-180 25-223 (492)
64 PLN03213 repressor of silencin 99.6 6.9E-15 1.5E-19 123.4 9.5 77 4-81 8-86 (759)
65 KOG0415 Predicted peptidyl pro 99.6 2.9E-15 6.4E-20 120.7 6.8 86 4-89 237-325 (479)
66 smart00362 RRM_2 RNA recogniti 99.6 1.5E-14 3.4E-19 94.1 9.1 70 8-77 1-71 (72)
67 KOG0124 Polypyrimidine tract-b 99.6 8.4E-14 1.8E-18 112.9 14.6 76 6-81 210-288 (544)
68 KOG0149 Predicted RNA-binding 99.6 6.9E-15 1.5E-19 112.5 7.2 76 7-83 13-91 (247)
69 KOG0126 Predicted RNA-binding 99.6 4.4E-16 9.4E-21 114.2 0.7 83 4-86 33-118 (219)
70 PLN03134 glycine-rich RNA-bind 99.6 2E-13 4.2E-18 101.0 14.6 77 106-186 33-113 (144)
71 KOG0113 U1 small nuclear ribon 99.6 1.7E-13 3.7E-18 108.2 14.6 69 105-173 99-171 (335)
72 PF13893 RRM_5: RNA recognitio 99.5 1E-13 2.2E-18 85.8 7.8 56 23-80 1-56 (56)
73 cd00590 RRM RRM (RNA recogniti 99.5 1.8E-13 3.9E-18 89.5 9.4 72 8-79 1-74 (74)
74 KOG0111 Cyclophilin-type pepti 99.5 2.1E-14 4.6E-19 108.5 5.4 83 4-86 8-93 (298)
75 smart00360 RRM RNA recognition 99.5 2.1E-13 4.5E-18 88.3 8.2 67 11-77 1-70 (71)
76 KOG0117 Heterogeneous nuclear 99.5 9.3E-14 2E-18 115.3 7.4 76 7-87 260-335 (506)
77 PF00076 RRM_1: RNA recognitio 99.4 8.5E-13 1.8E-17 85.6 8.8 64 110-173 1-67 (70)
78 KOG0108 mRNA cleavage and poly 99.4 6.3E-13 1.4E-17 113.8 9.2 79 7-85 19-100 (435)
79 KOG1456 Heterogeneous nuclear 99.4 1.4E-11 3E-16 100.4 16.2 172 4-177 285-479 (494)
80 KOG0109 RNA-binding protein LA 99.4 4E-13 8.7E-18 105.8 6.6 79 3-86 75-153 (346)
81 KOG0129 Predicted RNA-binding 99.4 7.2E-12 1.6E-16 106.3 14.0 163 5-172 258-444 (520)
82 KOG4212 RNA-binding protein hn 99.4 2.9E-11 6.2E-16 100.5 15.3 75 5-79 214-290 (608)
83 KOG0105 Alternative splicing f 99.4 6.9E-12 1.5E-16 92.6 9.6 78 107-188 6-84 (241)
84 smart00361 RRM_1 RNA recogniti 99.3 4.6E-12 9.9E-17 82.0 7.5 58 20-77 2-69 (70)
85 KOG1456 Heterogeneous nuclear 99.3 4.3E-11 9.4E-16 97.6 13.5 161 4-180 29-194 (494)
86 PLN03120 nucleic acid binding 99.3 1.2E-11 2.6E-16 98.1 10.0 73 107-184 4-77 (260)
87 KOG0125 Ataxin 2-binding prote 99.3 8.6E-12 1.9E-16 100.0 8.5 73 107-183 96-170 (376)
88 PF14259 RRM_6: RNA recognitio 99.3 2E-11 4.2E-16 79.2 8.1 64 110-173 1-67 (70)
89 KOG0114 Predicted RNA-binding 99.3 3.2E-11 7E-16 80.5 9.1 71 103-173 14-85 (124)
90 KOG0132 RNA polymerase II C-te 99.3 1.1E-11 2.3E-16 109.6 8.7 76 6-84 421-496 (894)
91 KOG1365 RNA-binding protein Fu 99.3 1.5E-11 3.2E-16 100.5 8.3 168 6-174 161-353 (508)
92 KOG0121 Nuclear cap-binding pr 99.2 2.1E-11 4.6E-16 84.6 6.7 77 105-185 34-114 (153)
93 KOG0120 Splicing factor U2AF, 99.2 3.8E-11 8.3E-16 103.6 9.7 167 4-174 173-360 (500)
94 KOG4454 RNA binding protein (R 99.2 2.6E-12 5.7E-17 97.3 1.8 138 5-170 8-150 (267)
95 KOG0112 Large RNA-binding prot 99.2 7.7E-12 1.7E-16 112.2 4.7 155 4-182 370-526 (975)
96 PLN03213 repressor of silencin 99.2 4.8E-11 1E-15 100.7 8.9 73 109-185 12-86 (759)
97 KOG0130 RNA-binding protein RB 99.2 7.5E-11 1.6E-15 82.6 7.2 75 105-183 70-148 (170)
98 smart00362 RRM_2 RNA recogniti 99.2 2.8E-10 6E-15 73.7 9.6 65 109-173 1-67 (72)
99 KOG0153 Predicted RNA-binding 99.2 1E-10 2.2E-15 94.6 8.7 76 4-82 226-302 (377)
100 PLN03121 nucleic acid binding 99.2 3.4E-10 7.4E-15 88.5 10.2 72 107-183 5-77 (243)
101 KOG0122 Translation initiation 99.1 2.6E-10 5.5E-15 88.1 8.8 76 107-186 189-268 (270)
102 KOG0146 RNA-binding protein ET 99.1 9E-11 2E-15 91.7 5.6 81 4-84 283-366 (371)
103 KOG4208 Nucleolar RNA-binding 99.1 3.2E-10 6.9E-15 85.6 7.9 79 5-83 48-130 (214)
104 KOG0131 Splicing factor 3b, su 99.1 2.2E-10 4.8E-15 84.6 6.5 81 5-85 95-179 (203)
105 smart00360 RRM RNA recognition 99.1 1E-09 2.2E-14 70.7 8.5 62 112-173 1-66 (71)
106 KOG0149 Predicted RNA-binding 99.1 3.5E-10 7.6E-15 87.0 7.0 73 107-180 12-88 (247)
107 KOG4660 Protein Mei2, essentia 99.1 1.3E-10 2.9E-15 99.5 5.1 156 4-163 73-231 (549)
108 KOG0415 Predicted peptidyl pro 99.0 1.4E-09 3E-14 88.3 9.1 76 103-182 235-314 (479)
109 cd00590 RRM RRM (RNA recogniti 99.0 4.2E-09 9.1E-14 68.4 9.8 64 110-173 2-68 (74)
110 KOG0533 RRM motif-containing p 99.0 2.3E-09 4.9E-14 84.9 9.2 81 4-84 81-163 (243)
111 KOG4211 Splicing factor hnRNP- 99.0 1.3E-08 2.9E-13 86.3 13.6 166 4-172 101-347 (510)
112 PF13893 RRM_5: RNA recognitio 99.0 4E-09 8.6E-14 65.0 7.5 49 124-173 1-49 (56)
113 KOG0126 Predicted RNA-binding 99.0 9.3E-11 2E-15 86.5 0.1 74 106-183 34-111 (219)
114 KOG0111 Cyclophilin-type pepti 99.0 8.9E-10 1.9E-14 83.8 5.0 80 105-188 8-91 (298)
115 KOG4661 Hsp27-ERE-TATA-binding 98.9 4.6E-09 9.9E-14 90.4 9.0 80 6-85 405-487 (940)
116 PF04059 RRM_2: RNA recognitio 98.9 1.1E-08 2.3E-13 69.5 8.6 76 7-82 2-86 (97)
117 KOG0116 RasGAP SH3 binding pro 98.9 5.3E-09 1.1E-13 89.4 7.3 76 6-82 288-366 (419)
118 KOG0151 Predicted splicing reg 98.9 6.9E-09 1.5E-13 91.4 8.0 79 4-82 172-256 (877)
119 KOG4205 RNA-binding protein mu 98.9 4.4E-09 9.5E-14 86.6 6.3 83 5-88 96-181 (311)
120 PF11608 Limkain-b1: Limkain b 98.8 1.9E-08 4E-13 65.0 7.3 70 7-83 3-77 (90)
121 COG0724 RNA-binding proteins ( 98.8 2.8E-08 6E-13 82.1 9.6 74 107-184 115-192 (306)
122 KOG0128 RNA-binding protein SA 98.8 6E-10 1.3E-14 99.9 -0.9 136 5-175 666-807 (881)
123 KOG4209 Splicing factor RNPS1, 98.8 1E-08 2.3E-13 81.4 5.7 79 4-83 99-180 (231)
124 smart00361 RRM_1 RNA recogniti 98.8 4.9E-08 1.1E-12 63.0 7.7 54 121-174 2-66 (70)
125 KOG0108 mRNA cleavage and poly 98.7 2.4E-08 5.2E-13 86.0 7.3 76 108-187 19-98 (435)
126 KOG4210 Nuclear localization s 98.7 3.5E-08 7.7E-13 81.0 7.6 167 5-185 87-262 (285)
127 KOG1365 RNA-binding protein Fu 98.7 3E-07 6.6E-12 75.8 12.4 156 4-164 58-225 (508)
128 KOG4676 Splicing factor, argin 98.7 4.8E-09 1E-13 86.3 0.8 63 7-71 152-214 (479)
129 KOG2193 IGF-II mRNA-binding pr 98.6 9E-09 1.9E-13 85.6 0.9 144 7-175 2-149 (584)
130 KOG1457 RNA binding protein (c 98.6 4.1E-08 8.9E-13 75.1 4.1 67 3-70 207-273 (284)
131 KOG4307 RNA binding protein RB 98.5 4E-07 8.8E-12 80.4 8.2 172 5-182 310-509 (944)
132 KOG4661 Hsp27-ERE-TATA-binding 98.5 6.6E-07 1.4E-11 77.4 9.3 76 105-184 403-482 (940)
133 KOG0116 RasGAP SH3 binding pro 98.5 2.5E-06 5.4E-11 73.3 11.5 74 109-187 290-367 (419)
134 PF08777 RRM_3: RNA binding mo 98.5 4.5E-07 9.7E-12 63.1 5.7 70 7-79 2-76 (105)
135 KOG0226 RNA-binding proteins [ 98.4 2.4E-07 5.2E-12 72.3 4.5 75 6-80 190-267 (290)
136 KOG0106 Alternative splicing f 98.4 1.5E-07 3.3E-12 73.0 3.2 69 4-77 97-165 (216)
137 KOG0132 RNA polymerase II C-te 98.4 1.2E-06 2.5E-11 78.5 7.4 76 106-187 420-495 (894)
138 KOG2202 U2 snRNP splicing fact 98.4 2.3E-06 4.9E-11 67.2 8.1 62 21-82 83-147 (260)
139 KOG0226 RNA-binding proteins [ 98.3 1.3E-06 2.9E-11 68.3 6.5 153 10-174 100-261 (290)
140 KOG4206 Spliceosomal protein s 98.3 2.2E-06 4.8E-11 66.1 7.6 66 108-173 10-80 (221)
141 KOG0153 Predicted RNA-binding 98.3 3E-06 6.5E-11 69.2 7.8 73 108-186 229-302 (377)
142 KOG0533 RRM motif-containing p 98.2 5.7E-06 1.2E-10 65.8 8.1 69 106-174 82-153 (243)
143 PF14605 Nup35_RRM_2: Nup53/35 98.2 4.5E-06 9.8E-11 50.3 5.3 53 6-62 1-53 (53)
144 KOG4208 Nucleolar RNA-binding 98.2 7.7E-06 1.7E-10 62.2 7.6 74 106-179 48-126 (214)
145 KOG1995 Conserved Zn-finger pr 98.2 1.8E-06 3.9E-11 71.0 4.5 81 5-85 65-156 (351)
146 KOG4660 Protein Mei2, essentia 98.2 2.1E-06 4.6E-11 74.3 4.9 71 104-175 72-142 (549)
147 KOG4454 RNA binding protein (R 98.2 1.1E-06 2.4E-11 67.2 2.6 70 104-173 6-77 (267)
148 KOG0151 Predicted splicing reg 98.2 5E-06 1.1E-10 73.9 6.9 69 104-172 171-246 (877)
149 KOG1548 Transcription elongati 98.1 3.1E-05 6.7E-10 63.4 9.6 79 103-185 130-219 (382)
150 COG5175 MOT2 Transcriptional r 98.1 1.2E-05 2.7E-10 65.4 6.7 75 7-81 115-201 (480)
151 KOG1855 Predicted RNA-binding 98.0 6.7E-06 1.4E-10 69.0 5.0 67 5-71 230-312 (484)
152 KOG4368 Predicted RNA binding 98.0 7.7E-06 1.7E-10 71.1 4.5 7 159-165 557-563 (757)
153 PF08777 RRM_3: RNA binding mo 98.0 1.8E-05 4E-10 55.1 5.5 57 110-168 4-60 (105)
154 PF05172 Nup35_RRM: Nup53/35/4 98.0 4.7E-05 1E-09 52.2 7.2 74 5-80 5-89 (100)
155 KOG3152 TBP-binding protein, a 97.9 7.6E-06 1.6E-10 64.2 2.6 71 5-75 73-158 (278)
156 KOG2416 Acinus (induces apopto 97.9 9.5E-06 2.1E-10 70.8 3.4 76 4-82 442-521 (718)
157 PF04059 RRM_2: RNA recognitio 97.9 0.00016 3.6E-09 49.2 8.4 68 108-175 2-75 (97)
158 KOG4307 RNA binding protein RB 97.9 9.1E-05 2E-09 66.0 8.8 76 4-79 864-943 (944)
159 KOG4210 Nuclear localization s 97.8 1.4E-05 3E-10 65.9 3.5 81 3-84 181-265 (285)
160 KOG2314 Translation initiation 97.8 7.5E-05 1.6E-09 65.0 7.8 76 6-81 58-142 (698)
161 KOG4849 mRNA cleavage factor I 97.8 2.5E-05 5.3E-10 64.0 3.5 74 6-79 80-158 (498)
162 PF08952 DUF1866: Domain of un 97.7 0.00026 5.6E-09 51.5 7.5 73 4-82 25-106 (146)
163 KOG0129 Predicted RNA-binding 97.7 0.00019 4.2E-09 62.0 7.9 61 4-64 368-432 (520)
164 KOG4209 Splicing factor RNPS1, 97.7 9E-05 1.9E-09 59.1 5.3 69 106-175 100-172 (231)
165 KOG0115 RNA-binding protein p5 97.6 0.00019 4.2E-09 56.5 6.6 101 57-182 6-109 (275)
166 PF08675 RNA_bind: RNA binding 97.6 0.00033 7.3E-09 45.5 6.4 54 7-66 10-63 (87)
167 KOG1996 mRNA splicing factor [ 97.5 0.00026 5.6E-09 56.8 6.4 61 20-80 300-364 (378)
168 KOG0112 Large RNA-binding prot 97.5 0.00014 3.1E-09 66.6 5.1 81 4-87 453-535 (975)
169 PF11608 Limkain-b1: Limkain b 97.5 0.00037 7.9E-09 45.4 5.2 66 109-184 4-74 (90)
170 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00036 7.9E-09 42.0 5.0 51 109-162 3-53 (53)
171 PF15023 DUF4523: Protein of u 97.5 0.0012 2.5E-08 47.5 8.1 74 3-81 83-160 (166)
172 KOG2202 U2 snRNP splicing fact 97.4 0.00021 4.5E-09 56.4 4.5 57 122-178 83-143 (260)
173 KOG0128 RNA-binding protein SA 97.4 1.3E-05 2.9E-10 72.7 -2.3 155 8-171 573-735 (881)
174 COG5175 MOT2 Transcriptional r 97.2 0.0011 2.3E-08 54.4 6.4 72 106-177 113-197 (480)
175 KOG3152 TBP-binding protein, a 97.2 0.00024 5.2E-09 56.0 2.4 69 106-174 73-157 (278)
176 PF05172 Nup35_RRM: Nup53/35/4 96.9 0.0046 9.9E-08 42.4 6.5 63 109-173 8-81 (100)
177 PF03467 Smg4_UPF3: Smg-4/UPF3 96.8 0.00089 1.9E-08 51.3 2.8 80 4-83 5-98 (176)
178 KOG1855 Predicted RNA-binding 96.8 0.0063 1.4E-07 51.7 7.6 64 105-168 229-309 (484)
179 KOG1996 mRNA splicing factor [ 96.8 0.0048 1E-07 49.8 6.6 57 121-177 300-361 (378)
180 PF07576 BRAP2: BRCA1-associat 96.8 0.015 3.3E-07 40.7 8.4 67 5-71 12-80 (110)
181 PF10309 DUF2414: Protein of u 96.8 0.013 2.9E-07 36.2 7.1 54 6-65 5-62 (62)
182 PF04847 Calcipressin: Calcipr 96.7 0.0071 1.5E-07 46.5 6.9 62 19-83 8-71 (184)
183 KOG2314 Translation initiation 96.7 0.0077 1.7E-07 53.0 7.5 69 106-174 57-134 (698)
184 PF03880 DbpA: DbpA RNA bindin 96.6 0.015 3.3E-07 37.6 6.9 66 8-80 2-74 (74)
185 PF08675 RNA_bind: RNA binding 96.6 0.013 2.8E-07 38.3 6.3 54 110-167 11-64 (87)
186 KOG2591 c-Mpl binding protein, 96.6 0.0035 7.5E-08 54.9 4.8 71 5-79 174-248 (684)
187 KOG2416 Acinus (induces apopto 96.6 0.0014 3E-08 57.8 2.3 65 106-172 443-508 (718)
188 KOG1995 Conserved Zn-finger pr 96.4 0.0049 1.1E-07 51.2 4.7 68 106-173 65-144 (351)
189 KOG0804 Cytoplasmic Zn-finger 96.4 0.023 5E-07 48.7 8.5 68 5-72 73-142 (493)
190 KOG0835 Cyclin L [General func 96.2 0.0089 1.9E-07 49.2 5.1 19 45-63 173-191 (367)
191 KOG2253 U1 snRNP complex, subu 96.2 0.0027 5.8E-08 56.8 2.2 119 5-130 39-158 (668)
192 KOG2135 Proteins containing th 96.1 0.0039 8.5E-08 53.6 2.7 75 6-84 372-447 (526)
193 KOG0115 RNA-binding protein p5 96.0 0.0083 1.8E-07 47.6 3.7 75 7-81 32-112 (275)
194 KOG4285 Mitotic phosphoprotein 95.8 0.042 9E-07 44.8 6.9 70 7-81 198-268 (350)
195 PF08952 DUF1866: Domain of un 95.4 0.075 1.6E-06 38.9 6.4 51 122-177 51-101 (146)
196 KOG2068 MOT2 transcription fac 95.4 0.0075 1.6E-07 49.8 1.3 75 7-81 78-161 (327)
197 KOG0835 Cyclin L [General func 95.3 0.033 7.1E-07 46.0 4.7 11 118-128 212-222 (367)
198 KOG4574 RNA-binding protein (c 95.3 0.029 6.3E-07 51.8 4.8 75 10-87 302-378 (1007)
199 KOG2591 c-Mpl binding protein, 95.2 0.13 2.8E-06 45.5 8.4 84 55-166 147-233 (684)
200 KOG2888 Putative RNA binding p 95.0 0.012 2.5E-07 48.4 1.4 10 122-131 227-236 (453)
201 PF10309 DUF2414: Protein of u 94.9 0.28 6E-06 30.3 7.0 54 107-165 5-62 (62)
202 PF11767 SET_assoc: Histone ly 94.1 0.36 7.8E-06 30.3 6.4 55 17-77 11-65 (66)
203 PF03467 Smg4_UPF3: Smg-4/UPF3 93.7 0.24 5.1E-06 38.0 6.0 68 108-175 8-85 (176)
204 KOG2193 IGF-II mRNA-binding pr 93.4 0.003 6.5E-08 53.5 -5.0 77 6-82 80-156 (584)
205 KOG2318 Uncharacterized conser 93.4 0.47 1E-05 42.4 8.0 81 3-83 171-308 (650)
206 KOG4019 Calcineurin-mediated s 93.3 0.55 1.2E-05 35.5 7.2 77 6-85 10-92 (193)
207 KOG2135 Proteins containing th 93.3 0.11 2.3E-06 45.1 3.8 63 110-175 375-438 (526)
208 PF15023 DUF4523: Protein of u 93.1 0.46 9.9E-06 34.5 6.2 64 103-169 82-149 (166)
209 PF07576 BRAP2: BRCA1-associat 92.5 2 4.4E-05 30.1 8.7 63 110-172 16-81 (110)
210 KOG4849 mRNA cleavage factor I 92.5 0.26 5.6E-06 41.1 4.8 66 109-174 82-153 (498)
211 PF14111 DUF4283: Domain of un 91.7 0.22 4.8E-06 37.1 3.6 111 17-143 28-141 (153)
212 PF07292 NID: Nmi/IFP 35 domai 91.3 0.23 4.9E-06 33.2 2.7 72 48-128 1-73 (88)
213 KOG3263 Nucleic acid binding p 89.8 0.076 1.6E-06 39.4 -0.5 10 254-263 84-93 (196)
214 KOG4285 Mitotic phosphoprotein 89.7 0.71 1.5E-05 37.9 4.8 60 110-173 200-259 (350)
215 KOG2068 MOT2 transcription fac 89.1 0.27 5.9E-06 40.9 2.1 67 108-174 78-154 (327)
216 KOG0804 Cytoplasmic Zn-finger 88.1 2.5 5.5E-05 36.8 7.2 66 107-172 74-142 (493)
217 PF10567 Nab6_mRNP_bdg: RNA-re 87.6 1.2 2.6E-05 36.5 4.8 163 6-168 15-214 (309)
218 KOG4410 5-formyltetrahydrofola 85.3 3.1 6.7E-05 34.0 6.0 49 6-56 330-378 (396)
219 PF04847 Calcipressin: Calcipr 84.6 4.3 9.2E-05 31.4 6.3 54 120-175 8-63 (184)
220 KOG2253 U1 snRNP complex, subu 84.6 1.1 2.4E-05 40.7 3.5 64 106-174 39-102 (668)
221 PF03468 XS: XS domain; Inter 84.4 1 2.2E-05 32.0 2.6 56 8-63 10-75 (116)
222 KOG4483 Uncharacterized conser 82.1 2.6 5.6E-05 36.1 4.5 56 6-64 391-446 (528)
223 KOG4574 RNA-binding protein (c 81.2 0.92 2E-05 42.5 1.7 60 110-171 301-360 (1007)
224 PF15513 DUF4651: Domain of un 78.0 5.7 0.00012 24.5 3.9 19 21-39 9-27 (62)
225 KOG1295 Nonsense-mediated deca 77.7 2.3 5.1E-05 36.2 3.0 66 6-71 7-78 (376)
226 KOG2891 Surface glycoprotein [ 74.4 4.3 9.3E-05 33.0 3.5 36 5-40 148-195 (445)
227 KOG4246 Predicted DNA-binding 72.8 1.5 3.3E-05 41.0 0.8 7 110-116 148-154 (1194)
228 PF03880 DbpA: DbpA RNA bindin 70.7 22 0.00047 22.7 5.7 52 117-173 11-67 (74)
229 KOG4365 Uncharacterized conser 70.7 0.73 1.6E-05 39.8 -1.6 74 7-81 4-80 (572)
230 PF11767 SET_assoc: Histone ly 70.3 24 0.00052 22.1 5.5 50 118-172 11-60 (66)
231 KOG2295 C2H2 Zn-finger protein 68.8 0.62 1.4E-05 41.4 -2.4 67 5-71 230-299 (648)
232 PF14893 PNMA: PNMA 68.0 7.3 0.00016 33.1 3.7 78 1-81 13-95 (331)
233 KOG4008 rRNA processing protei 67.9 5.1 0.00011 31.9 2.6 35 4-38 38-72 (261)
234 KOG4246 Predicted DNA-binding 64.1 3.4 7.3E-05 38.9 1.1 10 46-55 60-69 (1194)
235 KOG3580 Tight junction protein 63.8 45 0.00097 30.7 7.8 34 109-142 63-97 (1027)
236 KOG4410 5-formyltetrahydrofola 63.2 38 0.00082 27.9 6.7 46 110-156 333-378 (396)
237 PRK14548 50S ribosomal protein 61.5 42 0.00091 22.2 5.6 56 10-65 24-81 (84)
238 KOG2891 Surface glycoprotein [ 60.9 3.5 7.5E-05 33.6 0.5 127 46-172 76-249 (445)
239 TIGR03636 L23_arch archaeal ri 58.4 48 0.001 21.5 5.7 57 9-65 16-74 (77)
240 PF07292 NID: Nmi/IFP 35 domai 57.0 5.8 0.00013 26.5 1.0 25 4-28 50-74 (88)
241 COG5638 Uncharacterized conser 56.8 64 0.0014 28.1 7.2 37 3-39 143-184 (622)
242 KOG4213 RNA-binding protein La 55.6 18 0.00038 27.7 3.4 46 18-63 118-168 (205)
243 PF09707 Cas_Cas2CT1978: CRISP 54.6 32 0.0007 22.9 4.2 49 5-53 24-72 (86)
244 KOG3869 Uncharacterized conser 52.8 4.9 0.00011 34.7 0.2 17 255-271 309-325 (450)
245 PF13689 DUF4154: Domain of un 49.8 97 0.0021 22.7 6.7 60 20-81 2-61 (145)
246 PF02714 DUF221: Domain of unk 49.6 24 0.00052 29.9 3.9 33 48-82 1-33 (325)
247 COG0018 ArgS Arginyl-tRNA synt 49.2 1.9E+02 0.0041 27.0 9.6 98 20-143 60-166 (577)
248 PF08544 GHMP_kinases_C: GHMP 48.1 72 0.0016 20.4 6.0 43 21-65 37-79 (85)
249 PF07530 PRE_C2HC: Associated 47.9 69 0.0015 20.2 4.9 60 21-83 2-65 (68)
250 cd04889 ACT_PDH-BS-like C-term 46.5 59 0.0013 19.0 5.7 42 21-62 13-55 (56)
251 CHL00123 rps6 ribosomal protei 46.1 77 0.0017 21.6 5.2 55 8-64 10-81 (97)
252 KOG2146 Splicing coactivator S 46.1 80 0.0017 26.1 6.0 30 49-78 56-86 (354)
253 PF11411 DNA_ligase_IV: DNA li 45.0 17 0.00037 19.7 1.4 17 16-32 19-35 (36)
254 PRK14548 50S ribosomal protein 44.9 90 0.002 20.7 6.2 56 110-165 23-81 (84)
255 PRK11558 putative ssRNA endonu 44.4 46 0.001 22.7 3.8 50 6-55 27-76 (97)
256 PF11823 DUF3343: Protein of u 44.3 31 0.00067 21.9 2.9 30 46-75 2-31 (73)
257 KOG1295 Nonsense-mediated deca 43.5 37 0.00081 29.2 4.0 63 110-172 10-79 (376)
258 PF03439 Spt5-NGN: Early trans 42.7 53 0.0011 21.6 3.9 34 33-68 34-67 (84)
259 KOG0156 Cytochrome P450 CYP2 s 42.4 63 0.0014 29.4 5.5 59 10-75 36-97 (489)
260 smart00596 PRE_C2HC PRE_C2HC d 41.7 86 0.0019 19.9 4.4 59 21-82 2-64 (69)
261 KOG2187 tRNA uracil-5-methyltr 41.1 21 0.00045 32.2 2.2 75 11-87 30-105 (534)
262 PF09869 DUF2096: Uncharacteri 40.3 1.4E+02 0.003 22.7 6.0 50 8-65 114-163 (169)
263 PF08544 GHMP_kinases_C: GHMP 40.2 99 0.0021 19.8 5.8 44 122-166 37-80 (85)
264 PF10567 Nab6_mRNP_bdg: RNA-re 40.1 64 0.0014 26.8 4.6 55 107-161 15-80 (309)
265 PF00403 HMA: Heavy-metal-asso 39.2 85 0.0019 18.7 6.1 54 8-64 1-58 (62)
266 TIGR03636 L23_arch archaeal ri 39.0 1.1E+02 0.0024 19.9 6.3 56 110-165 16-74 (77)
267 cd04908 ACT_Bt0572_1 N-termina 37.1 98 0.0021 18.8 6.4 43 20-63 15-58 (66)
268 PF12829 Mhr1: Transcriptional 36.7 67 0.0015 21.6 3.6 52 13-65 19-71 (91)
269 PF08156 NOP5NT: NOP5NT (NUC12 36.7 11 0.00023 23.8 -0.2 39 21-66 27-65 (67)
270 PF01071 GARS_A: Phosphoribosy 36.6 1.4E+02 0.003 23.4 5.9 48 18-66 24-71 (194)
271 COG0150 PurM Phosphoribosylami 35.6 20 0.00044 30.4 1.2 50 18-68 273-322 (345)
272 KOG4483 Uncharacterized conser 35.4 86 0.0019 27.3 4.9 53 109-164 393-446 (528)
273 PF14111 DUF4283: Domain of un 34.9 44 0.00095 24.5 2.9 33 9-41 107-140 (153)
274 COG0030 KsgA Dimethyladenosine 34.4 61 0.0013 26.6 3.8 27 7-33 96-122 (259)
275 PRK10629 EnvZ/OmpR regulon mod 34.1 1.8E+02 0.0039 21.0 8.1 71 6-81 35-109 (127)
276 KOG3580 Tight junction protein 33.7 1.9E+02 0.0042 26.9 6.9 12 150-161 69-80 (1027)
277 PRK08559 nusG transcription an 33.7 2E+02 0.0043 21.4 6.2 33 33-67 36-68 (153)
278 PF09902 DUF2129: Uncharacteri 33.2 1.2E+02 0.0026 19.4 4.2 39 26-70 16-54 (71)
279 PTZ00191 60S ribosomal protein 32.1 1.7E+02 0.0037 21.7 5.3 54 10-63 85-140 (145)
280 PF08442 ATP-grasp_2: ATP-gras 31.3 1.3E+02 0.0029 23.6 5.1 54 18-71 25-81 (202)
281 PRK08559 nusG transcription an 31.2 2.1E+02 0.0046 21.2 6.0 33 134-167 36-68 (153)
282 TIGR01873 cas_CT1978 CRISPR-as 31.1 1.1E+02 0.0023 20.5 3.9 50 5-54 24-74 (87)
283 PRK11634 ATP-dependent RNA hel 31.0 1.6E+02 0.0035 27.8 6.5 68 8-82 488-562 (629)
284 PF15063 TC1: Thyroid cancer p 30.9 35 0.00075 21.9 1.4 24 10-33 29-52 (79)
285 PF05189 RTC_insert: RNA 3'-te 30.0 1E+02 0.0022 21.0 3.9 45 9-53 13-65 (103)
286 PF02829 3H: 3H domain; Inter 29.5 1.4E+02 0.0031 20.4 4.4 51 17-67 8-58 (98)
287 PRK11901 hypothetical protein; 29.4 1.6E+02 0.0034 25.1 5.4 49 17-67 253-306 (327)
288 KOG4008 rRNA processing protei 28.7 45 0.00098 26.7 2.1 35 105-139 38-72 (261)
289 PRK11230 glycolate oxidase sub 28.5 1.4E+02 0.0031 27.2 5.5 48 19-66 202-255 (499)
290 cd00027 BRCT Breast Cancer Sup 27.9 96 0.0021 18.3 3.3 27 7-33 2-28 (72)
291 COG0002 ArgC Acetylglutamate s 26.9 1.9E+02 0.0041 24.9 5.5 44 13-56 252-304 (349)
292 COG3254 Uncharacterized conser 26.7 2.2E+02 0.0048 19.7 5.4 43 121-163 26-69 (105)
293 COG5193 LHP1 La protein, small 26.6 35 0.00076 29.6 1.2 58 7-64 175-245 (438)
294 COG4010 Uncharacterized protei 26.4 2.1E+02 0.0047 21.1 4.9 46 13-65 118-163 (170)
295 COG0090 RplB Ribosomal protein 25.9 82 0.0018 25.8 3.1 51 103-154 123-178 (275)
296 PF14026 DUF4242: Protein of u 25.9 1.9E+02 0.0041 18.6 7.8 60 9-69 3-70 (77)
297 PF15407 Spo7_2_N: Sporulation 25.8 24 0.00053 22.2 0.1 25 5-29 26-50 (67)
298 PF12091 DUF3567: Protein of u 25.6 95 0.0021 20.6 2.8 16 118-133 61-76 (85)
299 PRK11901 hypothetical protein; 24.1 3.4E+02 0.0073 23.2 6.4 50 119-169 254-308 (327)
300 PF00398 RrnaAD: Ribosomal RNA 22.9 68 0.0015 26.2 2.3 23 6-28 97-119 (262)
301 KOG0862 Synaptobrevin/VAMP-lik 22.7 60 0.0013 25.7 1.8 13 43-55 107-119 (216)
302 PF06014 DUF910: Bacterial pro 22.5 58 0.0013 20.2 1.3 17 20-36 4-20 (62)
303 COG5470 Uncharacterized conser 22.3 2.5E+02 0.0053 19.1 4.3 20 44-63 52-71 (96)
304 PHA01632 hypothetical protein 22.3 1E+02 0.0022 18.5 2.2 21 9-29 19-39 (64)
305 PF03389 MobA_MobL: MobA/MobL 21.2 1.7E+02 0.0036 23.3 4.1 47 10-56 71-125 (216)
306 PF01782 RimM: RimM N-terminal 20.5 2E+02 0.0043 18.6 3.8 23 45-68 54-76 (84)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=6.1e-32 Score=226.75 Aligned_cols=152 Identities=27% Similarity=0.443 Sum_probs=136.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
...++|||+|||+++|+++|+++|+.||+|+.|+|+. ++.+++||||+|.++++|+.|++.||+..|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 4678999999999999999999999999999999954 5678899999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHH
Q 023820 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYD 156 (276)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~ 156 (276)
.... ......+|||+|||..+++++|+++|.+||.|..+.++.+. .++||||+|.+.+
T Consensus 185 ~p~~------------------~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e 246 (346)
T TIGR01659 185 RPGG------------------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKRE 246 (346)
T ss_pred cccc------------------cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHH
Confidence 6422 11223469999999999999999999999999999998875 3469999999999
Q ss_pred HHHHHHHhcCCceeccc
Q 023820 157 DMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 157 ~a~~a~~~l~~~~~~g~ 173 (276)
+|++|++.|++..+.+.
T Consensus 247 ~A~~Ai~~lng~~~~g~ 263 (346)
T TIGR01659 247 EAQEAISALNNVIPEGG 263 (346)
T ss_pred HHHHHHHHhCCCccCCC
Confidence 99999999999998774
No 2
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=2.5e-29 Score=183.57 Aligned_cols=182 Identities=65% Similarity=1.090 Sum_probs=154.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 1 m~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
|+++.+++|||+|||+++.+.+|.+||-+||.|.+|.|+.......||||+|+++.+|+.|+..-+|..++|..|.|+++
T Consensus 1 ~~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 1 MSGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred CCCcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 88999999999999999999999999999999999999877777889999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCC---------CCCCCCCCCCc-EEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEE
Q 023820 81 HGGRGRSSSDRHSSHSSG---------RGRGVSRRSEY-LLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIV 150 (276)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~-l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv 150 (276)
....... .....+.+. ...++...+.. |.|.+||+..++++|++++.+.|+|....+.+|. ++.|
T Consensus 81 rggr~s~--~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg---~GvV 155 (241)
T KOG0105|consen 81 RGGRSSS--DRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG---VGVV 155 (241)
T ss_pred cCCCccc--ccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc---ceee
Confidence 8776221 111111111 11234445555 9999999999999999999999999999998884 7899
Q ss_pred EeCCHHHHHHHHHhcCCceecccceeeEEeeecccCC
Q 023820 151 DYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHR 187 (276)
Q Consensus 151 ~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~~~~ 187 (276)
+|...++.+-|+.+|+...+.....+..|.+......
T Consensus 156 ~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~~~~ 192 (241)
T KOG0105|consen 156 EYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRGDENR 192 (241)
T ss_pred eeeehhhHHHHHHhhccccccCcCcEeeEEecccCCC
Confidence 9999999999999999998887666778888776554
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=2.1e-29 Score=215.87 Aligned_cols=160 Identities=24% Similarity=0.425 Sum_probs=139.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
+.++|||+|||+.+++++|+++|+.||+|..|+|+. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 578999999999999999999999999999999965 46789999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHH
Q 023820 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDD 157 (276)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~ 157 (276)
.... ......|||+|||..+++++|.++|.+||.|..+.++.+. ..+||||+|.+.++
T Consensus 82 ~~~~------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~ 143 (352)
T TIGR01661 82 PSSD------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDE 143 (352)
T ss_pred cccc------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHH
Confidence 4321 1233469999999999999999999999999999998764 45799999999999
Q ss_pred HHHHHHhcCCceecccceeeEEeeecc
Q 023820 158 MKHAIKKLDDSEFRNAFSRAYVRVREY 184 (276)
Q Consensus 158 a~~a~~~l~~~~~~g~~~~~~i~~~~~ 184 (276)
|+.|++.|+|..+.|... .+.+...
T Consensus 144 A~~ai~~l~g~~~~g~~~--~i~v~~a 168 (352)
T TIGR01661 144 ADRAIKTLNGTTPSGCTE--PITVKFA 168 (352)
T ss_pred HHHHHHHhCCCccCCCce--eEEEEEC
Confidence 999999999999987433 3444443
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=2.6e-29 Score=221.50 Aligned_cols=170 Identities=21% Similarity=0.353 Sum_probs=141.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
..++|||+|||+.+++++|+++|..||+|..|.|.. +++++|||||+|.+.++|+.|+..|||..|.|+.|.|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 458999999999999999999999999999999965 56889999999999999999999999999999999998644
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHH
Q 023820 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDD 157 (276)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~ 157 (276)
......... ............|||+||+..+++++|+++|..||.|..+.+..+. .+|||||+|.+.++
T Consensus 186 ~~p~a~~~~-------~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~ 258 (612)
T TIGR01645 186 NMPQAQPII-------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 258 (612)
T ss_pred ccccccccc-------ccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHH
Confidence 321110000 0000111233469999999999999999999999999999999874 45799999999999
Q ss_pred HHHHHHhcCCceecccceeeEEeeeccc
Q 023820 158 MKHAIKKLDDSEFRNAFSRAYVRVREYD 185 (276)
Q Consensus 158 a~~a~~~l~~~~~~g~~~~~~i~~~~~~ 185 (276)
|.+|+..||+..++| ..++|...-
T Consensus 259 A~kAI~amNg~elgG----r~LrV~kAi 282 (612)
T TIGR01645 259 QSEAIASMNLFDLGG----QYLRVGKCV 282 (612)
T ss_pred HHHHHHHhCCCeeCC----eEEEEEecC
Confidence 999999999999999 566666544
No 5
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.7e-29 Score=193.90 Aligned_cols=168 Identities=19% Similarity=0.324 Sum_probs=142.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
-.|||+.|.+.++-+.|++.|.+||+|.+++|.+ +++++||+||.|.+.++|+.||..|||.+|+++.|+-.||..+
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 3589999999999999999999999999999965 5799999999999999999999999999999999999999877
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCc-EEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHH
Q 023820 84 RGRSSSDRHSSHSSGRGRGVSRRSEY-LLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAI 162 (276)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~-l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~ 162 (276)
+....... .....--....+.++ ||++|++..+++++|++.|..||+|..|.+.++. +|+||.|++.|.|..||
T Consensus 143 p~e~n~~~---ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q--GYaFVrF~tkEaAahAI 217 (321)
T KOG0148|consen 143 PSEMNGKP---LTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ--GYAFVRFETKEAAAHAI 217 (321)
T ss_pred ccccCCCC---ccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc--ceEEEEecchhhHHHHH
Confidence 62222111 000001112233444 9999999999999999999999999999999885 59999999999999999
Q ss_pred HhcCCceecccceeeEE
Q 023820 163 KKLDDSEFRNAFSRAYV 179 (276)
Q Consensus 163 ~~l~~~~~~g~~~~~~i 179 (276)
..+|+.++.|...+|..
T Consensus 218 v~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 218 VQMNNTEIGGQLVRCSW 234 (321)
T ss_pred HHhcCceeCceEEEEec
Confidence 99999999998776654
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=2.8e-28 Score=215.76 Aligned_cols=171 Identities=23% Similarity=0.329 Sum_probs=141.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
++.++|||+|||..+++++|+++|+.||.|..|.|+. ++.++|||||+|.+.++|++||. |||..|.|++|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 5678999999999999999999999999999999965 46789999999999999999998 9999999999999887
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHH
Q 023820 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYD 156 (276)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~ 156 (276)
............ . .....+...+|||+|||..+++++|.++|.+||.|..|.+..+.. .+||||+|.+.+
T Consensus 166 ~~~~~~~~~~~~--~----~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e 239 (457)
T TIGR01622 166 QAEKNRAAKAAT--H----QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAE 239 (457)
T ss_pred chhhhhhhhccc--c----cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHH
Confidence 543322111000 0 000112255699999999999999999999999999999998754 479999999999
Q ss_pred HHHHHHHhcCCceecccceeeEEeeeccc
Q 023820 157 DMKHAIKKLDDSEFRNAFSRAYVRVREYD 185 (276)
Q Consensus 157 ~a~~a~~~l~~~~~~g~~~~~~i~~~~~~ 185 (276)
+|..|+..|+|..+.| ..|.|....
T Consensus 240 ~A~~A~~~l~g~~i~g----~~i~v~~a~ 264 (457)
T TIGR01622 240 EAKEALEVMNGFELAG----RPIKVGYAQ 264 (457)
T ss_pred HHHHHHHhcCCcEECC----EEEEEEEcc
Confidence 9999999999999998 555555543
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=1.2e-27 Score=211.58 Aligned_cols=160 Identities=17% Similarity=0.226 Sum_probs=134.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHh--cCCCccCCceEEEEEccC
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG--RDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~--lng~~~~g~~i~v~~a~~ 82 (276)
|+++|||+|||+.+++++|.++|++||.|..|.+.. .++||||+|.+.++|+.|+.. +|+..|.|++|.|.|+..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~---~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP---GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC---CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 679999999999999999999999999999999973 578999999999999999986 478899999999999975
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHH
Q 023820 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAI 162 (276)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~ 162 (276)
........ . ......+.....|+|+||+..+++++|.++|..||.|..|.++.+...++|||+|.+.++|.+|+
T Consensus 78 ~~~~~~~~--~----~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~ 151 (481)
T TIGR01649 78 QEIKRDGN--S----DFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAK 151 (481)
T ss_pred cccccCCC--C----cccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHH
Confidence 43221110 0 00001111223489999999999999999999999999999988877679999999999999999
Q ss_pred HhcCCceeccc
Q 023820 163 KKLDDSEFRNA 173 (276)
Q Consensus 163 ~~l~~~~~~g~ 173 (276)
+.|||..+.+.
T Consensus 152 ~~Lng~~i~~~ 162 (481)
T TIGR01649 152 AALNGADIYNG 162 (481)
T ss_pred HHhcCCcccCC
Confidence 99999999764
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=3e-27 Score=202.54 Aligned_cols=177 Identities=23% Similarity=0.316 Sum_probs=139.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCC--ceEEEEE
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVEL 79 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g--~~i~v~~ 79 (276)
..++|||+|||+.+++++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|+.|++.|||..+.| .+|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 457899999999999999999999999999999865 35678999999999999999999999999887 6788888
Q ss_pred ccCCCCCCCC--------------CCC-----------------------------------------------CCCCCC
Q 023820 80 AHGGRGRSSS--------------DRH-----------------------------------------------SSHSSG 98 (276)
Q Consensus 80 a~~~~~~~~~--------------~~~-----------------------------------------------~~~~~~ 98 (276)
+......... ... ......
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 7643310000 000 000000
Q ss_pred -----------C--CCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHH
Q 023820 99 -----------R--GRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHA 161 (276)
Q Consensus 99 -----------~--~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a 161 (276)
+ .......+.+|||+|||..+++++|.++|.+||.|..+.++.+. .+|||||+|.+.++|..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 0 00001112249999999999999999999999999999999885 567999999999999999
Q ss_pred HHhcCCceecccceeeEEeeeccc
Q 023820 162 IKKLDDSEFRNAFSRAYVRVREYD 185 (276)
Q Consensus 162 ~~~l~~~~~~g~~~~~~i~~~~~~ 185 (276)
+..|||..++| +.|.|....
T Consensus 328 i~~lnG~~~~g----r~i~V~~~~ 347 (352)
T TIGR01661 328 ILSLNGYTLGN----RVLQVSFKT 347 (352)
T ss_pred HHHhCCCEECC----eEEEEEEcc
Confidence 99999999999 566665543
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=3.6e-27 Score=213.37 Aligned_cols=151 Identities=25% Similarity=0.418 Sum_probs=133.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
.+|||+|||+++|+++|.++|+.||+|..|.|.. +++++|||||+|.+.++|++|+..||+..|.|++|.|.|+...
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 3799999999999999999999999999999965 4678899999999999999999999999999999999997542
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC---CCCeEEEEeCCHHHHHH
Q 023820 84 RGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKH 160 (276)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~---~~~~~fv~f~~~~~a~~ 160 (276)
... ......+|||+|||.++++++|.++|..||.|..|.+..+. ..+||||+|.+.++|..
T Consensus 81 ~~~----------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~ 144 (562)
T TIGR01628 81 PSL----------------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKA 144 (562)
T ss_pred ccc----------------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHH
Confidence 211 11123469999999999999999999999999999998874 45799999999999999
Q ss_pred HHHhcCCceeccc
Q 023820 161 AIKKLDDSEFRNA 173 (276)
Q Consensus 161 a~~~l~~~~~~g~ 173 (276)
|++.++|..+.|.
T Consensus 145 Ai~~lng~~~~~~ 157 (562)
T TIGR01628 145 AIQKVNGMLLNDK 157 (562)
T ss_pred HHHHhcccEecCc
Confidence 9999999999983
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=1.3e-26 Score=204.98 Aligned_cols=169 Identities=20% Similarity=0.283 Sum_probs=135.8
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 4 RASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 4 ~~~~~l~v~nL~~-~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
.++++|||+|||+ .+|+++|.++|+.||.|..|+++.+ .+|+|||+|.+.++|..|+..|||..|.|++|.|.+++.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~--~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN--KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 4678999999998 6999999999999999999999764 368999999999999999999999999999999999875
Q ss_pred CCCCCCCCC-----C---CCCCCC-----------CCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCC--eeEEEEee
Q 023820 83 GRGRSSSDR-----H---SSHSSG-----------RGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFR 141 (276)
Q Consensus 83 ~~~~~~~~~-----~---~~~~~~-----------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~--i~~~~~~~ 141 (276)
......... . ..+... .......++.+|||+|||..+++++|+++|..||. +..+.+..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~ 430 (481)
T TIGR01649 351 QNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFP 430 (481)
T ss_pred ccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEec
Confidence 432211100 0 000000 00011234556999999999999999999999998 77787765
Q ss_pred cC--CCCeEEEEeCCHHHHHHHHHhcCCceecccc
Q 023820 142 DG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 174 (276)
Q Consensus 142 ~~--~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 174 (276)
.. ..++|||+|.+.++|.+|+..||+..+.++.
T Consensus 431 ~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~ 465 (481)
T TIGR01649 431 KDNERSKMGLLEWESVEDAVEALIALNHHQLNEPN 465 (481)
T ss_pred CCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCC
Confidence 43 2469999999999999999999999999864
No 11
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.95 E-value=9e-28 Score=187.29 Aligned_cols=144 Identities=31% Similarity=0.548 Sum_probs=133.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCCCCC
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~~~~ 86 (276)
-+|||+|||.++++++|+.+|++||+|.+|.|+ +.||||..++...|..|+..|||..|+|..|+|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK--- 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK--- 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEecccc---
Confidence 479999999999999999999999999999999 789999999999999999999999999999999998764
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcC
Q 023820 87 SSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 166 (276)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 166 (276)
....++|+|+|+.+.++.++|++.|.+||+++.+++.++ |+||.|+-.++|.+|++.|+
T Consensus 75 -----------------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----y~fvh~d~~eda~~air~l~ 133 (346)
T KOG0109|consen 75 -----------------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----YAFVHFDRAEDAVEAIRGLD 133 (346)
T ss_pred -----------------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc----eeEEEEeeccchHHHHhccc
Confidence 235667999999999999999999999999999999998 99999999999999999999
Q ss_pred CceecccceeeEE
Q 023820 167 DSEFRNAFSRAYV 179 (276)
Q Consensus 167 ~~~~~g~~~~~~i 179 (276)
+.++.|+..+..+
T Consensus 134 ~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 134 NTEFQGKRMHVQL 146 (346)
T ss_pred ccccccceeeeee
Confidence 9999996544433
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=2.3e-26 Score=206.29 Aligned_cols=174 Identities=20% Similarity=0.311 Sum_probs=133.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhc------------CCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCcc
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKY------------GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~------------G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~ 70 (276)
+...++|||+|||+.+|+++|.++|..| +.|..+.+. ..+|||||+|.+.++|+.||. |||..|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~---~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN---KEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC---CCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 4567899999999999999999999975 344445443 568999999999999999996 999999
Q ss_pred CCceEEEEEccCCCCCCCCCCCCC------CCC-----CCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEE
Q 023820 71 DGHRLRVELAHGGRGRSSSDRHSS------HSS-----GRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQV 139 (276)
Q Consensus 71 ~g~~i~v~~a~~~~~~~~~~~~~~------~~~-----~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~ 139 (276)
.|.+|.|.........+....... ... ............|||+|||..+++++|.++|..||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 999999976554332111000000 000 001112233456999999999999999999999999999999
Q ss_pred eecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecc
Q 023820 140 FRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 184 (276)
Q Consensus 140 ~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~ 184 (276)
+.+. ..|||||+|.+.++|..|+..|+|..+.| ..+.|...
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~----~~l~v~~a 372 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGD----NKLHVQRA 372 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEEC
Confidence 8774 45799999999999999999999999999 44555544
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=5.2e-26 Score=200.42 Aligned_cols=173 Identities=23% Similarity=0.404 Sum_probs=134.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccC-CceEEEEEccC
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAHG 82 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~-g~~i~v~~a~~ 82 (276)
.++|||+|||+++++++|+++|++||.|.+|+|+. ++.++|||||+|.+.++|++||+.||+..|. |+.|.|.++..
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~ 137 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD 137 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc
Confidence 48999999999999999999999999999999865 4788999999999999999999999998885 77766654431
Q ss_pred CCC----------C------------------------CCCCCCCCC-------------------CC-----C------
Q 023820 83 GRG----------R------------------------SSSDRHSSH-------------------SS-----G------ 98 (276)
Q Consensus 83 ~~~----------~------------------------~~~~~~~~~-------------------~~-----~------ 98 (276)
... . ....+...+ .. +
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vd 217 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVD 217 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEE
Confidence 000 0 000000000 00 0
Q ss_pred --CCC-----CCCCCCCcEEEeCCCCCCCHHHHHHHhhhc--CCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCce
Q 023820 99 --RGR-----GVSRRSEYLLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE 169 (276)
Q Consensus 99 --~~~-----~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~ 169 (276)
... .......+|||+||+..+++++|+++|..| |+|..|.+..+ ||||+|.+.++|++|++.||+.+
T Consensus 218 wA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg----fAFVeF~s~e~A~kAi~~lnG~~ 293 (578)
T TIGR01648 218 WAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD----YAFVHFEDREDAVKAMDELNGKE 293 (578)
T ss_pred eecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC----eEEEEeCCHHHHHHHHHHhCCCE
Confidence 000 001123459999999999999999999999 99999988754 99999999999999999999999
Q ss_pred ecccceeeEEeeecccC
Q 023820 170 FRNAFSRAYVRVREYDH 186 (276)
Q Consensus 170 ~~g~~~~~~i~~~~~~~ 186 (276)
|.| ..|.|..+..
T Consensus 294 i~G----r~I~V~~Akp 306 (578)
T TIGR01648 294 LEG----SEIEVTLAKP 306 (578)
T ss_pred ECC----EEEEEEEccC
Confidence 999 6677776644
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=1.1e-25 Score=201.75 Aligned_cols=171 Identities=19% Similarity=0.346 Sum_probs=134.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
+.++|||+|||..+++++|.++|+.||.|..+.|.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 458999999999999999999999999999999854 57789999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCC------CCCCC----CCCCCCCCCcEEEeCCCCCC----------CHHHHHHHhhhcCCeeEEEEee
Q 023820 82 GGRGRSSSDRHSS------HSSGR----GRGVSRRSEYLLVTGLPSSA----------SWQDLKDHMRRAGDVCFSQVFR 141 (276)
Q Consensus 82 ~~~~~~~~~~~~~------~~~~~----~~~~~~~~~~l~v~nl~~~~----------~~~~l~~~f~~~g~i~~~~~~~ 141 (276)
............. ..... ......++.+|+|.|+.... ..++|.++|.+||.|..|.|+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 5543322211110 00000 00112234558999985321 2367899999999999999986
Q ss_pred cC-------CCCeEEEEeCCHHHHHHHHHhcCCceecccce
Q 023820 142 DG-------SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 175 (276)
Q Consensus 142 ~~-------~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 175 (276)
.. ..|++||+|.+.++|++|+..|+|..|.|+..
T Consensus 454 ~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v 494 (509)
T TIGR01642 454 PNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVV 494 (509)
T ss_pred cCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 52 23689999999999999999999999999544
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=4e-26 Score=206.58 Aligned_cols=170 Identities=24% Similarity=0.388 Sum_probs=138.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccC----CceEEEE
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD----GHRLRVE 78 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~----g~~i~v~ 78 (276)
..++|||+|||+++|+++|+++|+.||+|..+.+.. ++..+|||||+|.+.++|.+|++.|||..|. |..|.|.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~ 256 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVG 256 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEee
Confidence 457899999999999999999999999999999965 4567899999999999999999999999999 9999998
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC---CCCeEEEEeCCH
Q 023820 79 LAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNY 155 (276)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~---~~~~~fv~f~~~ 155 (276)
++............................+|||+||+..+++++|+++|..||.|..+.++.+. .++||||+|.+.
T Consensus 257 ~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~ 336 (562)
T TIGR01628 257 RAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNP 336 (562)
T ss_pred cccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCH
Confidence 87654332110000000000001112334459999999999999999999999999999999884 357999999999
Q ss_pred HHHHHHHHhcCCceecccc
Q 023820 156 DDMKHAIKKLDDSEFRNAF 174 (276)
Q Consensus 156 ~~a~~a~~~l~~~~~~g~~ 174 (276)
++|.+|+..||+..++|+.
T Consensus 337 ~~A~~A~~~~~g~~~~gk~ 355 (562)
T TIGR01628 337 EEANRAVTEMHGRMLGGKP 355 (562)
T ss_pred HHHHHHHHHhcCCeeCCce
Confidence 9999999999999999943
No 16
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=1.6e-25 Score=163.45 Aligned_cols=160 Identities=24% Similarity=0.361 Sum_probs=136.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
+...||||+||+..++++.|.++|-+.|+|..+.++. +....|||||+|.++|+|+-|++.||...|.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 5568999999999999999999999999999999965 4567899999999999999999999988999999999887
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeE-EEEeecC----CCCeEEEEeCCH
Q 023820 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDG----SGTTGIVDYTNY 155 (276)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~-~~~~~~~----~~~~~fv~f~~~ 155 (276)
..... ....+..|||+||.+.+++..|.++|+.||.+.. ..++.+. ++++|||.|.+.
T Consensus 87 s~~~~-----------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sf 149 (203)
T KOG0131|consen 87 SAHQK-----------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASF 149 (203)
T ss_pred ccccc-----------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhH
Confidence 62211 2233456999999999999999999999998775 4555554 346999999999
Q ss_pred HHHHHHHHhcCCceecccceeeEEe
Q 023820 156 DDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 156 ~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
+.+..|+..|+|..++++..+....
T Consensus 150 easd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 150 EASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred HHHHHHHHHhccchhcCCceEEEEE
Confidence 9999999999999999955444433
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.8e-25 Score=171.94 Aligned_cols=162 Identities=24% Similarity=0.398 Sum_probs=143.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
..+.|.|.-||.++|+++|+.+|...|+|++|++.. +|++.||+||.|.++++|++|+..|||..+..+.|+|.+|.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 457789999999999999999999999999999965 68999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHH
Q 023820 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDD 157 (276)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~ 157 (276)
+.. .......|||.+||..++..+|+++|.+||.|+...+..|. .+|.+||.|+...+
T Consensus 120 PSs------------------~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~E 181 (360)
T KOG0145|consen 120 PSS------------------DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIE 181 (360)
T ss_pred CCh------------------hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhH
Confidence 643 34456679999999999999999999999999988887775 45689999999999
Q ss_pred HHHHHHhcCCceecccceeeEEeeecccC
Q 023820 158 MKHAIKKLDDSEFRNAFSRAYVRVREYDH 186 (276)
Q Consensus 158 a~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 186 (276)
|++||..|||....|. ...|.|..+..
T Consensus 182 Ae~AIk~lNG~~P~g~--tepItVKFann 208 (360)
T KOG0145|consen 182 AEEAIKGLNGQKPSGC--TEPITVKFANN 208 (360)
T ss_pred HHHHHHhccCCCCCCC--CCCeEEEecCC
Confidence 9999999999998874 34667765544
No 18
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=5.6e-25 Score=180.99 Aligned_cols=168 Identities=24% Similarity=0.356 Sum_probs=133.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccC-CceEEEEEcc
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAH 81 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~-g~~i~v~~a~ 81 (276)
.|-|||+.||.++.|++|.-||++.|+|-++.|+. +|.++|||||.|.+.+.|++|++.||+.+|. |+.|.|..+.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 47899999999999999999999999999999965 4789999999999999999999999999985 8888887655
Q ss_pred CCCCC-----CC-------------------------------CCCC------------------------CCCCCC---
Q 023820 82 GGRGR-----SS-------------------------------SDRH------------------------SSHSSG--- 98 (276)
Q Consensus 82 ~~~~~-----~~-------------------------------~~~~------------------------~~~~~~--- 98 (276)
....- +. ..+. +.+...
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 21110 00 0000 000000
Q ss_pred ---CCC--C---CCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCcee
Q 023820 99 ---RGR--G---VSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 170 (276)
Q Consensus 99 ---~~~--~---~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~ 170 (276)
.+. . ....-..|||.||+.++|++.|+++|.+||.|..|..+.| ||||.|.+.++|.+|++.+++++|
T Consensus 243 dWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkel 318 (506)
T KOG0117|consen 243 DWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKEL 318 (506)
T ss_pred eccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCcee
Confidence 000 0 1112223999999999999999999999999999999987 999999999999999999999999
Q ss_pred cccceee
Q 023820 171 RNAFSRA 177 (276)
Q Consensus 171 ~g~~~~~ 177 (276)
.|.....
T Consensus 319 dG~~iEv 325 (506)
T KOG0117|consen 319 DGSPIEV 325 (506)
T ss_pred cCceEEE
Confidence 9954433
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=2e-24 Score=191.18 Aligned_cols=172 Identities=22% Similarity=0.360 Sum_probs=134.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC---CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
+++|||+|||+.+++++|+++|++||.|..|.|..+ +.++|||||+|.+.++|..|+..|||..|.|++|.|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 589999999999999999999999999999999653 47789999999999999999999999999999999999763
Q ss_pred CCCCCCCCC----------------------------------CCCCCCCC-----------------------------
Q 023820 83 GRGRSSSDR----------------------------------HSSHSSGR----------------------------- 99 (276)
Q Consensus 83 ~~~~~~~~~----------------------------------~~~~~~~~----------------------------- 99 (276)
......... .....+..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 221100000 00000000
Q ss_pred ----C-----CCCCCCCCcEEEeCCCCCCC----------HHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHH
Q 023820 100 ----G-----RGVSRRSEYLLVTGLPSSAS----------WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKH 160 (276)
Q Consensus 100 ----~-----~~~~~~~~~l~v~nl~~~~~----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~ 160 (276)
. ........+|+|.||....+ .++|.+.|.+||.|+.+.+......|++||+|.+.++|..
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~ 425 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALA 425 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHH
Confidence 0 00113345588888854443 3689999999999999999877778899999999999999
Q ss_pred HHHhcCCceecccceee
Q 023820 161 AIKKLDDSEFRNAFSRA 177 (276)
Q Consensus 161 a~~~l~~~~~~g~~~~~ 177 (276)
|++.|+|..++|+....
T Consensus 426 A~~~lnGr~f~gr~i~~ 442 (457)
T TIGR01622 426 AFQALNGRYFGGKMITA 442 (457)
T ss_pred HHHHhcCcccCCeEEEE
Confidence 99999999999955443
No 20
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.9e-25 Score=182.95 Aligned_cols=168 Identities=24% Similarity=0.418 Sum_probs=141.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCc-cCC--ceEEEE
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYD-FDG--HRLRVE 78 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~-~~g--~~i~v~ 78 (276)
..-+|||+.||..++|.||+++|++||.|.+|.|++ ++.++|||||.|.+.++|.+|+..||+.. |.| .+|.|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 346899999999999999999999999999999965 56899999999999999999999999864 544 689998
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC---CCCeEEEEeCCH
Q 023820 79 LAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNY 155 (276)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~---~~~~~fv~f~~~ 155 (276)
+|...... -.....|||+-|+..+++.+++++|.+||.|++|.|+.+. .+|||||.|.+.
T Consensus 113 ~Ad~E~er-----------------~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstk 175 (510)
T KOG0144|consen 113 YADGERER-----------------IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTK 175 (510)
T ss_pred ccchhhhc-----------------cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehH
Confidence 88754321 1234569999999999999999999999999999999985 568999999999
Q ss_pred HHHHHHHHhcCCceecccceeeEEeeecccCCCCC
Q 023820 156 DDMKHAIKKLDDSEFRNAFSRAYVRVREYDHRRDG 190 (276)
Q Consensus 156 ~~a~~a~~~l~~~~~~g~~~~~~i~~~~~~~~r~~ 190 (276)
+-|..||+.||+..-... +...+.|+.++..+.+
T Consensus 176 e~A~~Aika~ng~~tmeG-cs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 176 EMAVAAIKALNGTQTMEG-CSQPLVVKFADTQKDK 209 (510)
T ss_pred HHHHHHHHhhccceeecc-CCCceEEEecccCCCc
Confidence 999999999999864432 2356777777665544
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=7e-24 Score=178.48 Aligned_cols=177 Identities=22% Similarity=0.323 Sum_probs=145.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC---CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
..||||++||+.++.++|.++|+.+|+|..+.+..+ +..+||+||.|.-.|+++.|+..+++..|.|+.|.|.++..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 389999999999999999999999999999999664 36789999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCC------CCCC--CCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCC---CeEEEE
Q 023820 83 GRGRSSSDRHSSHS------SGRG--RGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVD 151 (276)
Q Consensus 83 ~~~~~~~~~~~~~~------~~~~--~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~fv~ 151 (276)
.............. ...+ .....+.+.|+|.|||+.+...+|+.+|+.||.|..|.|+....+ |||||.
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~ 164 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQ 164 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEE
Confidence 66544222111100 0000 111223566999999999999999999999999999999877543 699999
Q ss_pred eCCHHHHHHHHHhcCCceecccceeeEEeeecccC
Q 023820 152 YTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 186 (276)
Q Consensus 152 f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 186 (276)
|....+|..|++.+|+..|.| +.|.|+++=.
T Consensus 165 fk~~~dA~~Al~~~N~~~i~g----R~VAVDWAV~ 195 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDG----RPVAVDWAVD 195 (678)
T ss_pred EeeHHHHHHHHHhccCceecC----ceeEEeeecc
Confidence 999999999999999999999 5666665443
No 22
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.6e-23 Score=161.25 Aligned_cols=170 Identities=25% Similarity=0.353 Sum_probs=138.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCC--ceEEEEEc
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELA 80 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g--~~i~v~~a 80 (276)
...|||.+||..+|..+|.++|++||.|..-.|.. ++.++|.+||.|...++|+.|+..|||..-.| .+|.|.|+
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 35799999999999999999999999998877743 67899999999999999999999999988766 59999998
Q ss_pred cCCCCCCCCCC--------CCCC--------------------------CC-----------CCCCCCCCCCCcEEEeCC
Q 023820 81 HGGRGRSSSDR--------HSSH--------------------------SS-----------GRGRGVSRRSEYLLVTGL 115 (276)
Q Consensus 81 ~~~~~~~~~~~--------~~~~--------------------------~~-----------~~~~~~~~~~~~l~v~nl 115 (276)
........... ...+ .+ ....+.+...+||||.||
T Consensus 207 nnPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL 286 (360)
T KOG0145|consen 207 NNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL 286 (360)
T ss_pred CCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec
Confidence 75432111000 0000 00 011233445678999999
Q ss_pred CCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccce
Q 023820 116 PSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 175 (276)
Q Consensus 116 ~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 175 (276)
.+++++..|.++|.+||.|..|++..|. .+||+||.|.+.++|..|+..|||..++++..
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvL 350 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 350 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEE
Confidence 9999999999999999999999999984 46899999999999999999999999999544
No 23
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1.8e-22 Score=170.12 Aligned_cols=172 Identities=22% Similarity=0.377 Sum_probs=134.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
.-.|.|.|||+.+.+.+|..+|+.||.|..|.|+. ++...|||||.|.+..+|..|++.|||..|+|++|.|.||-.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 45799999999999999999999999999999965 5667799999999999999999999999999999999999754
Q ss_pred CCCCCCC-----------------C-----C-------------CCC--CC---------C---------CC--------
Q 023820 84 RGRSSSD-----------------R-----H-------------SSH--SS---------G---------RG-------- 100 (276)
Q Consensus 84 ~~~~~~~-----------------~-----~-------------~~~--~~---------~---------~~-------- 100 (276)
..-.... . . ... .+ . ..
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 3321100 0 0 000 00 0 00
Q ss_pred ---------CCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhc--
Q 023820 101 ---------RGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKL-- 165 (276)
Q Consensus 101 ---------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l-- 165 (276)
........+|||.|||+++++++|.+.|.+||+|.++.+..++ +.|.|||.|.+..+|+.||...
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Asp 356 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASP 356 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCc
Confidence 0000112459999999999999999999999999999998886 4469999999999999999986
Q ss_pred ---CC-ceecccceee
Q 023820 166 ---DD-SEFRNAFSRA 177 (276)
Q Consensus 166 ---~~-~~~~g~~~~~ 177 (276)
.| ..+.|+....
T Consensus 357 a~e~g~~ll~GR~Lkv 372 (678)
T KOG0127|consen 357 ASEDGSVLLDGRLLKV 372 (678)
T ss_pred cCCCceEEEeccEEee
Confidence 22 4566644333
No 24
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=2.3e-23 Score=159.83 Aligned_cols=162 Identities=38% Similarity=0.651 Sum_probs=131.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCCCCC
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~~~~ 86 (276)
..|||++||+.+.+.+|..||..||.|.++.|. .||+||+|++..+|..|+..||+..|.|..+.|+|+......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 468999999999999999999999999999997 789999999999999999999999999999999999864332
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCCc-EEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHh
Q 023820 87 SSSDRHSSHSS-GRGRGVSRRSEY-LLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKK 164 (276)
Q Consensus 87 ~~~~~~~~~~~-~~~~~~~~~~~~-l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~ 164 (276)
.+........+ ......+..+.+ +.|.+++..+.+++|.+.|.++|.+....++ .+++||+|...++|..|+..
T Consensus 77 ~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~----~~~~~v~Fs~~~da~ra~~~ 152 (216)
T KOG0106|consen 77 RGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR----RNFAFVEFSEQEDAKRALEK 152 (216)
T ss_pred cCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh----ccccceeehhhhhhhhcchh
Confidence 21111110000 112233444555 9999999999999999999999999665553 34899999999999999999
Q ss_pred cCCceecccceee
Q 023820 165 LDDSEFRNAFSRA 177 (276)
Q Consensus 165 l~~~~~~g~~~~~ 177 (276)
|++..+.+...+.
T Consensus 153 l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 153 LDGKKLNGRRISV 165 (216)
T ss_pred ccchhhcCceeee
Confidence 9999999954433
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=8.1e-24 Score=170.18 Aligned_cols=162 Identities=20% Similarity=0.364 Sum_probs=135.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
|.|||+.|...+.|+.|+..|..||+|++|.+.| +++++|||||+|+-+|.|+.|++.|||..++|+.|+|.....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 6799999999999999999999999999999976 5689999999999999999999999999999999999632110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHH
Q 023820 84 RGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMK 159 (276)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~ 159 (276)
+ ....-...........+.|||..+.++.+++||+..|..||+|.+|.+..++. +||+|++|.+.....
T Consensus 194 p-------QAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~ 266 (544)
T KOG0124|consen 194 P-------QAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 266 (544)
T ss_pred c-------ccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchH
Confidence 0 00000000001122345599999999999999999999999999999998864 469999999999999
Q ss_pred HHHHhcCCceecccce
Q 023820 160 HAIKKLDDSEFRNAFS 175 (276)
Q Consensus 160 ~a~~~l~~~~~~g~~~ 175 (276)
+|+..||-..++|.+.
T Consensus 267 eAiasMNlFDLGGQyL 282 (544)
T KOG0124|consen 267 EAIASMNLFDLGGQYL 282 (544)
T ss_pred HHhhhcchhhcccceE
Confidence 9999999999999544
No 26
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=2.9e-22 Score=145.60 Aligned_cols=75 Identities=20% Similarity=0.258 Sum_probs=67.6
Q ss_pred CCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecccC
Q 023820 107 SEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 186 (276)
Q Consensus 107 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 186 (276)
...|||+||+..+++.||+.+|..||+|..|+|.. .+.+||||+|+++.+|+.|+..|+|..|.| ..|+|+....
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG----~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICG----SRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccC----ceEEEEeecC
Confidence 44599999999999999999999999999999999 556799999999999999999999999999 6777775544
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.1e-21 Score=165.84 Aligned_cols=140 Identities=26% Similarity=0.404 Sum_probs=127.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCCCCC
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~~~~ 86 (276)
..|||| +++|+.+|.++|+.+|+|..+.+..+..+.|||||.|+++++|..||..||...+.|++|.+-|+...+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~-- 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP-- 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC--
Confidence 478998 999999999999999999999994432389999999999999999999999999999999999986432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCC--CeEEEEeCCHHHHHHHHHh
Q 023820 87 SSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG--TTGIVDYTNYDDMKHAIKK 164 (276)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--~~~fv~f~~~~~a~~a~~~ 164 (276)
..|||.||++.++..+|.++|..||.|..|++..+..+ +| ||+|++.++|.+|+..
T Consensus 77 ---------------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~ 134 (369)
T KOG0123|consen 77 ---------------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEK 134 (369)
T ss_pred ---------------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHH
Confidence 12999999999999999999999999999999998754 68 9999999999999999
Q ss_pred cCCceeccc
Q 023820 165 LDDSEFRNA 173 (276)
Q Consensus 165 l~~~~~~g~ 173 (276)
+||..+.|+
T Consensus 135 ~ng~ll~~k 143 (369)
T KOG0123|consen 135 LNGMLLNGK 143 (369)
T ss_pred hcCcccCCC
Confidence 999999994
No 28
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.87 E-value=9.1e-21 Score=144.10 Aligned_cols=171 Identities=23% Similarity=0.341 Sum_probs=138.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHH----HHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEE
Q 023820 1 MSSRASRTLYVGNLPGDIREREVED----LFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (276)
Q Consensus 1 m~~~~~~~l~v~nL~~~~t~~~l~~----~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~ 76 (276)
|+.+++.||||.||+..+..++|+. +|++||.|.+|....+.+.+|.|||.|.+.+.|..|+..|+|..|.|++++
T Consensus 4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 4557777999999999999999888 999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCC------C--------------CCCC------------CCCCCCCCCCCcEEEeCCCCCCCHHHH
Q 023820 77 VELAHGGRGRSSSDRH------S--------------SHSS------------GRGRGVSRRSEYLLVTGLPSSASWQDL 124 (276)
Q Consensus 77 v~~a~~~~~~~~~~~~------~--------------~~~~------------~~~~~~~~~~~~l~v~nl~~~~~~~~l 124 (276)
|++|+.....-..... . ...+ ........+...+++.|+|..++.+.+
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 9999854332211000 0 0000 000111233444999999999999999
Q ss_pred HHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecc
Q 023820 125 KDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRN 172 (276)
Q Consensus 125 ~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g 172 (276)
..+|.+|.....+.+..... +.|||+|.+...|..|...+.+..+.-
T Consensus 164 ~~lf~qf~g~keir~i~~~~-~iAfve~~~d~~a~~a~~~lq~~~it~ 210 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPRS-GIAFVEFLSDRQASAAQQALQGFKITK 210 (221)
T ss_pred HHHHhhCcccceeEeccCCC-ceeEEecchhhhhHHHhhhhccceecc
Confidence 99999999998888876543 489999999999999999999988763
No 29
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.87 E-value=1.6e-21 Score=169.25 Aligned_cols=158 Identities=23% Similarity=0.420 Sum_probs=132.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CC----CCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PP----RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~----~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
++|||.||++.+|.++|..+|...|.|..+.|.. ++ .+.|||||+|.++++|+.|++.|+|+.|+|..|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 3499999999999999999999999999998843 22 24599999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHH
Q 023820 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYD 156 (276)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~ 156 (276)
...+..... .........+.|+|.|+|...+..+++++|..||.+..|.++... ..|||||+|.++.
T Consensus 596 ~~k~~~~~g---------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ 666 (725)
T KOG0110|consen 596 ENKPASTVG---------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPR 666 (725)
T ss_pred cCccccccc---------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcH
Confidence 822111111 001112224569999999999999999999999999999998772 3579999999999
Q ss_pred HHHHHHHhcCCceeccc
Q 023820 157 DMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 157 ~a~~a~~~l~~~~~~g~ 173 (276)
+|..|+.+|..+.+-|+
T Consensus 667 ea~nA~~al~STHlyGR 683 (725)
T KOG0110|consen 667 EAKNAFDALGSTHLYGR 683 (725)
T ss_pred HHHHHHHhhcccceech
Confidence 99999999999999983
No 30
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=1.2e-20 Score=137.24 Aligned_cols=80 Identities=49% Similarity=0.817 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
.-.++|||+||+..+++.+|..+|..||+|..|+|.. .+.|||||||+++.+|++|+..|+|..|.|..|.|+++...
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 4579999999999999999999999999999999965 45789999999999999999999999999999999999865
Q ss_pred CC
Q 023820 84 RG 85 (276)
Q Consensus 84 ~~ 85 (276)
..
T Consensus 86 ~r 87 (195)
T KOG0107|consen 86 PR 87 (195)
T ss_pred cc
Confidence 53
No 31
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.85 E-value=1.5e-20 Score=140.13 Aligned_cols=80 Identities=36% Similarity=0.606 Sum_probs=74.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
.-++|.|-||...++.++|+.+|++||.|-+|.|++ +.+++|||||.|.+..+|++|++.|+|.+|+|+.|.|++|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 457899999999999999999999999999999976 56889999999999999999999999999999999999887
Q ss_pred CCC
Q 023820 82 GGR 84 (276)
Q Consensus 82 ~~~ 84 (276)
-..
T Consensus 92 ygr 94 (256)
T KOG4207|consen 92 YGR 94 (256)
T ss_pred cCC
Confidence 543
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2.2e-20 Score=144.74 Aligned_cols=136 Identities=24% Similarity=0.380 Sum_probs=112.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 1 m~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
|.+...+||||+||...+||+-|..||++.|.|..++|+.+ .|+|.|+
T Consensus 1 ~~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------------------e~~v~wa 48 (321)
T KOG0148|consen 1 NGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------------------ELKVNWA 48 (321)
T ss_pred CCCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------------------hhccccc
Confidence 45678899999999999999999999999999999998743 5677776
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCc--EEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCC
Q 023820 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEY--LLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTN 154 (276)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~ 154 (276)
.....+. .+....+ +||+.|...++-++|++.|.+||+|..+++++|. .+||+||.|.+
T Consensus 49 ~~p~nQs---------------k~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~ 113 (321)
T KOG0148|consen 49 TAPGNQS---------------KPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPN 113 (321)
T ss_pred cCcccCC---------------CCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccc
Confidence 6442221 1222223 9999999999999999999999999999999995 55799999999
Q ss_pred HHHHHHHHHhcCCceecccceeeEEeeecccCC
Q 023820 155 YDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHR 187 (276)
Q Consensus 155 ~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~~~~ 187 (276)
.++|+.||..|+|.+|++ +.|+..++-++
T Consensus 114 k~dAEnAI~~MnGqWlG~----R~IRTNWATRK 142 (321)
T KOG0148|consen 114 KEDAENAIQQMNGQWLGR----RTIRTNWATRK 142 (321)
T ss_pred hHHHHHHHHHhCCeeecc----ceeeccccccC
Confidence 999999999999999999 55665555443
No 33
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=8.7e-20 Score=154.30 Aligned_cols=158 Identities=26% Similarity=0.432 Sum_probs=135.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC-CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
+....|||.||++.++..+|.++|+.||+|.+|++..+ ..++|| ||+|++++.|.+|+..|||..+.|++|.|.....
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 44555999999999999999999999999999999653 348889 9999999999999999999999999999988776
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC---CCCeEEEEeCCHHHHH
Q 023820 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMK 159 (276)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~---~~~~~fv~f~~~~~a~ 159 (276)
.......... .......++|.+++.+.+++.|.+.|..+|.|..+.++.+. +.+|+||.|++.++|.
T Consensus 153 ~~er~~~~~~----------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~ 222 (369)
T KOG0123|consen 153 KEEREAPLGE----------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAK 222 (369)
T ss_pred hhhhcccccc----------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHH
Confidence 5433222111 11233449999999999999999999999999999999874 4579999999999999
Q ss_pred HHHHhcCCceecc
Q 023820 160 HAIKKLDDSEFRN 172 (276)
Q Consensus 160 ~a~~~l~~~~~~g 172 (276)
.|+..|++..+.+
T Consensus 223 ~av~~l~~~~~~~ 235 (369)
T KOG0123|consen 223 KAVETLNGKIFGD 235 (369)
T ss_pred HHHHhccCCcCCc
Confidence 9999999999986
No 34
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.84 E-value=3.8e-20 Score=156.64 Aligned_cols=171 Identities=23% Similarity=0.389 Sum_probs=132.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
..|||+||..++++++|+.+|+.||.|..|.+.. +|..+||+||+|.+.++|.+|+..|||..|.|+.|+|......
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 3489999999999999999999999999999954 6899999999999999999999999999999999999876644
Q ss_pred CCCCCCCCC---------CCC---CCC------------------------------------C------CCCCC-----
Q 023820 84 RGRSSSDRH---------SSH---SSG------------------------------------R------GRGVS----- 104 (276)
Q Consensus 84 ~~~~~~~~~---------~~~---~~~------------------------------------~------~~~~~----- 104 (276)
......... ... ..+ + ...+.
T Consensus 359 ~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~ 438 (549)
T KOG0147|consen 359 VDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPA 438 (549)
T ss_pred cccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccc
Confidence 333221000 000 000 0 00111
Q ss_pred --CCCCcEEEeCCC--CCCC--------HHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecc
Q 023820 105 --RRSEYLLVTGLP--SSAS--------WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRN 172 (276)
Q Consensus 105 --~~~~~l~v~nl~--~~~~--------~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g 172 (276)
.++.|+.+.|+- ...| .+++.+.+.+||+|..|.+.++.. |+.||.|.+.+.|..|+.+|||.++.|
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~-g~VYvrc~s~~~A~~a~~alhgrWF~g 517 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA-GCVYVRCPSAEAAGTAVKALHGRWFAG 517 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC-ceEEEecCcHHHHHHHHHHHhhhhhcc
Confidence 345567777762 2222 368888999999999999877765 899999999999999999999999999
Q ss_pred cceeeE
Q 023820 173 AFSRAY 178 (276)
Q Consensus 173 ~~~~~~ 178 (276)
+..+..
T Consensus 518 r~Ita~ 523 (549)
T KOG0147|consen 518 RMITAK 523 (549)
T ss_pred ceeEEE
Confidence 877663
No 35
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.82 E-value=1.9e-18 Score=153.15 Aligned_cols=78 Identities=24% Similarity=0.483 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
..++|||+|||+++++++|+++|+.||+|..+.|.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 457999999999999999999999999999999965 35689999999999999999999999999999999999877
Q ss_pred C
Q 023820 82 G 82 (276)
Q Consensus 82 ~ 82 (276)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 4
No 36
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.82 E-value=5.5e-21 Score=155.07 Aligned_cols=166 Identities=15% Similarity=0.168 Sum_probs=118.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC------CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEE
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP------PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~------~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v 77 (276)
.....|.|.||.+++|.++++.||..+|+|.++.|..+ +.....|||.|.+...+..|.+ |.++.|-|+.|.|
T Consensus 5 ~~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv 83 (479)
T KOG4676|consen 5 SSLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIV 83 (479)
T ss_pred CCCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEE
Confidence 34458999999999999999999999999999999542 2334699999999999999988 7777777777766
Q ss_pred EEccCCCCCCC---------CCCCCCCCCCC--------------------C---------CCCCCCCCcEEEeCCCCCC
Q 023820 78 ELAHGGRGRSS---------SDRHSSHSSGR--------------------G---------RGVSRRSEYLLVTGLPSSA 119 (276)
Q Consensus 78 ~~a~~~~~~~~---------~~~~~~~~~~~--------------------~---------~~~~~~~~~l~v~nl~~~~ 119 (276)
........+-. ........+++ . ...+....+++|++|+..+
T Consensus 84 ~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~ 163 (479)
T KOG4676|consen 84 RPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAA 163 (479)
T ss_pred EecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhh
Confidence 55432221100 00000000000 0 0001122348889999999
Q ss_pred CHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceec
Q 023820 120 SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 171 (276)
Q Consensus 120 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~ 171 (276)
...++.+.|..+|++.+..+.......+|.++|........|+. ++|.++.
T Consensus 164 ~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 164 ILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred cchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 99999999999999999888777777789999998888888887 5555543
No 37
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.82 E-value=1.4e-20 Score=159.22 Aligned_cols=169 Identities=21% Similarity=0.338 Sum_probs=138.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
+..+|||+-.|+..+++.+|.+||+.+|.|.+|.++. ...++|.|||+|.+.+++..|+. |.|..+.|.+|.|+..
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEeccc
Confidence 5568899999999999999999999999999999965 46789999999999999999997 9999999999999887
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHH
Q 023820 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYD 156 (276)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~ 156 (276)
.......... .....+ .+...+...|||+||..++++.+|..+|..||.|..|.+..+. ..|||||+|.+.+
T Consensus 256 Eaeknr~a~~-s~a~~~---k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~ 331 (549)
T KOG0147|consen 256 EAEKNRAANA-SPALQG---KGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKE 331 (549)
T ss_pred HHHHHHHHhc-cccccc---cccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHH
Confidence 6544331111 111111 1111122228999999999999999999999999999998884 5579999999999
Q ss_pred HHHHHHHhcCCceecccceee
Q 023820 157 DMKHAIKKLDDSEFRNAFSRA 177 (276)
Q Consensus 157 ~a~~a~~~l~~~~~~g~~~~~ 177 (276)
+|..|+.+|||.++.|+..+.
T Consensus 332 ~ar~a~e~lngfelAGr~ikV 352 (549)
T KOG0147|consen 332 DARKALEQLNGFELAGRLIKV 352 (549)
T ss_pred HHHHHHHHhccceecCceEEE
Confidence 999999999999999965543
No 38
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.81 E-value=6.7e-19 Score=130.15 Aligned_cols=83 Identities=25% Similarity=0.502 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
..+++|||+|||+.+++++|+++|++||+|..|.|.. ++++++||||+|.+.++|+.|++.||+..|.|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 3578999999999999999999999999999999965 4678999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 023820 81 HGGRGR 86 (276)
Q Consensus 81 ~~~~~~ 86 (276)
......
T Consensus 112 ~~~~~~ 117 (144)
T PLN03134 112 NDRPSA 117 (144)
T ss_pred CcCCCC
Confidence 865543
No 39
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.80 E-value=2.5e-18 Score=129.86 Aligned_cols=167 Identities=23% Similarity=0.380 Sum_probs=128.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCC----CceEEEEecCHHHHHHHHHhcCCCccC---CceEEEE
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRP----PGYAFVEFEEARDAEDAIRGRDGYDFD---GHRLRVE 78 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~----~g~afV~f~~~e~a~~A~~~lng~~~~---g~~i~v~ 78 (276)
-+||||.+||.++...+|..+|..|--.....|..+.+. +.+|||.|.+..+|++|++.|||..|+ +..|.++
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 589999999999999999999999977777777665443 379999999999999999999999997 8899999
Q ss_pred EccCCCCCCCCCCCCCCCCC----------------------------------C-------------------------
Q 023820 79 LAHGGRGRSSSDRHSSHSSG----------------------------------R------------------------- 99 (276)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~----------------------------------~------------------------- 99 (276)
+++...+..........+.. .
T Consensus 114 lAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a 193 (284)
T KOG1457|consen 114 LAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSA 193 (284)
T ss_pred ehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcc
Confidence 99854432221111000000 0
Q ss_pred ---------CCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCcee
Q 023820 100 ---------GRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 170 (276)
Q Consensus 100 ---------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~ 170 (276)
.........+|||.||.+++++++|+.+|+.|-.....++.....-..||++|++.+.|..|+..|+|..+
T Consensus 194 ~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 194 NAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred cchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 00001112249999999999999999999999888777775554445899999999999999999999988
Q ss_pred cc
Q 023820 171 RN 172 (276)
Q Consensus 171 ~g 172 (276)
..
T Consensus 274 s~ 275 (284)
T KOG1457|consen 274 SS 275 (284)
T ss_pred cc
Confidence 54
No 40
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=8.2e-19 Score=144.31 Aligned_cols=76 Identities=30% Similarity=0.483 Sum_probs=69.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCc-cC--CceEEEEEc
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYD-FD--GHRLRVELA 80 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~-~~--g~~i~v~~a 80 (276)
.++|||+-|++.+||.+|+++|.+||.|++|.|.. ++.++|||||.|.+.|.|..|++.|||.. +. ..+|.|.||
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 57899999999999999999999999999999977 46789999999999999999999999965 44 469999999
Q ss_pred c
Q 023820 81 H 81 (276)
Q Consensus 81 ~ 81 (276)
.
T Consensus 204 D 204 (510)
T KOG0144|consen 204 D 204 (510)
T ss_pred c
Confidence 7
No 41
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.79 E-value=1e-18 Score=142.84 Aligned_cols=160 Identities=21% Similarity=0.373 Sum_probs=132.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEE
Q 023820 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (276)
Q Consensus 1 m~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v 77 (276)
|+....++|||++|+++++++.|++.|.+||+|.++.++. ++.+++|+||+|++++.+.++|. .....|+|+.|.+
T Consensus 1 ~~~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 1 SESGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEP 79 (311)
T ss_pred CCccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccc
Confidence 3445789999999999999999999999999999999965 56888999999999999998888 6677899999999
Q ss_pred EEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeC
Q 023820 78 ELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYT 153 (276)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~ 153 (276)
.-+.+...+...... .....|||++||.++++++|++.|.+||.|..+.++.|. ..+|+||.|.
T Consensus 80 k~av~r~~~~~~~~~------------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~ 147 (311)
T KOG4205|consen 80 KRAVSREDQTKVGRH------------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFD 147 (311)
T ss_pred eeccCcccccccccc------------cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEec
Confidence 887765543322211 123459999999999999999999999999999998885 4579999999
Q ss_pred CHHHHHHHHHhcCCceecccc
Q 023820 154 NYDDMKHAIKKLDDSEFRNAF 174 (276)
Q Consensus 154 ~~~~a~~a~~~l~~~~~~g~~ 174 (276)
+.+.+.+++. ..-..++++.
T Consensus 148 ~e~sVdkv~~-~~f~~~~gk~ 167 (311)
T KOG4205|consen 148 SEDSVDKVTL-QKFHDFNGKK 167 (311)
T ss_pred cccccceecc-cceeeecCce
Confidence 9999988887 5666667643
No 42
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=2.3e-17 Score=129.90 Aligned_cols=87 Identities=34% Similarity=0.586 Sum_probs=78.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
+.|=+||||+-|+.+++|..|+..|+.||+|+.|.|+. +++++|||||+|+++.+...|++..+|..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 46779999999999999999999999999999999954 689999999999999999999999999999999999998
Q ss_pred ccCCCCCCCC
Q 023820 80 AHGGRGRSSS 89 (276)
Q Consensus 80 a~~~~~~~~~ 89 (276)
-.......|.
T Consensus 178 ERgRTvkgW~ 187 (335)
T KOG0113|consen 178 ERGRTVKGWL 187 (335)
T ss_pred cccccccccc
Confidence 7766554443
No 43
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=1e-17 Score=129.85 Aligned_cols=169 Identities=24% Similarity=0.351 Sum_probs=132.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCc-cCC--ceEEEEE
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYD-FDG--HRLRVEL 79 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~-~~g--~~i~v~~ 79 (276)
..++|||+-|...-.|+|++.+|..||.|.+|.+.. ++.++|+|||.|...-+|+.||..|||.. +.| ..|.|.+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 468999999999999999999999999999999965 67899999999999999999999999864 444 5788888
Q ss_pred ccCCCC-------------------------------------------------------------------------C
Q 023820 80 AHGGRG-------------------------------------------------------------------------R 86 (276)
Q Consensus 80 a~~~~~-------------------------------------------------------------------------~ 86 (276)
+..... .
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 761111 0
Q ss_pred C---CCCCC-------------------CCC------CCCC---------------------------------------
Q 023820 87 S---SSDRH-------------------SSH------SSGR--------------------------------------- 99 (276)
Q Consensus 87 ~---~~~~~-------------------~~~------~~~~--------------------------------------- 99 (276)
+ ..... ..+ ..+.
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 0 00000 000 0000
Q ss_pred -----------CC--------CCCCCCCc-EEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCH
Q 023820 100 -----------GR--------GVSRRSEY-LLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNY 155 (276)
Q Consensus 100 -----------~~--------~~~~~~~~-l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~ 155 (276)
+. ....+..| |||.-||....+.||.++|-.||.|+..++..|. .+.|+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 00 00113445 9999999999999999999999999999998885 345999999999
Q ss_pred HHHHHHHHhcCCceeccc
Q 023820 156 DDMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 156 ~~a~~a~~~l~~~~~~g~ 173 (276)
..|+.||..|||..|+=+
T Consensus 338 ~SaQaAIqAMNGFQIGMK 355 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMK 355 (371)
T ss_pred hhHHHHHHHhcchhhhhh
Confidence 999999999999999873
No 44
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.75 E-value=1.1e-16 Score=128.47 Aligned_cols=177 Identities=20% Similarity=0.273 Sum_probs=135.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEe--cCCCCCceEEEEecCHHHHHHHHHhcCCCccCCc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDLK--IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~--------v~~~--~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~ 73 (276)
.-++.|||.|||.++|.+++.++|++||-|.. |+|. ..|..+|-|+|.|-..|++..|+..|++..|.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 34677999999999999999999999997743 5553 3578899999999999999999999999999999
Q ss_pred eEEEEEccCCCCCCCCCCCC-------------------CCCCCC-CCCCCCCCCcEEEeCCCCC----CC-------HH
Q 023820 74 RLRVELAHGGRGRSSSDRHS-------------------SHSSGR-GRGVSRRSEYLLVTGLPSS----AS-------WQ 122 (276)
Q Consensus 74 ~i~v~~a~~~~~~~~~~~~~-------------------~~~~~~-~~~~~~~~~~l~v~nl~~~----~~-------~~ 122 (276)
.|+|+-|+-..+..-..... ...+.. .........+|.+.|+-.. .+ ++
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 99999887432211100000 000001 1122334445888887321 12 46
Q ss_pred HHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 123 DLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 123 ~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
+|.+.+.+||.|..|.+....+.|-+.|.|.+.++|..||+.|+|.++.|+.....+.
T Consensus 292 dl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred HHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEe
Confidence 7778899999999999999999999999999999999999999999999976655554
No 45
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.75 E-value=8.4e-17 Score=132.79 Aligned_cols=169 Identities=22% Similarity=0.319 Sum_probs=133.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFY-KYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~-~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
...+.+||+|||+++.+++|++||. +.|+|..|.|.. .++++|+|.|||+++|.+++|++.||...+.|++|.|.-.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 3456799999999999999999997 789999999965 5789999999999999999999999999999999999876
Q ss_pred cCCCCCCC-------------------CC-----------------------CCCC----------CCCC----------
Q 023820 81 HGGRGRSS-------------------SD-----------------------RHSS----------HSSG---------- 98 (276)
Q Consensus 81 ~~~~~~~~-------------------~~-----------------------~~~~----------~~~~---------- 98 (276)
.......- -+ .... +...
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 54111000 00 0000 0000
Q ss_pred -----CCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC---CCCeEEEEeCCHHHHHHHHHhcCCcee
Q 023820 99 -----RGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEF 170 (276)
Q Consensus 99 -----~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~~~~~ 170 (276)
.....++..+.+||.||.+.+....|.+.|...|.+..+.+-.++ .+++|.++|.++-+|-+||..+++.-+
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~ 281 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGL 281 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCC
Confidence 011134445569999999999999999999999999999887775 457999999999999999999997554
Q ss_pred cc
Q 023820 171 RN 172 (276)
Q Consensus 171 ~g 172 (276)
..
T Consensus 282 ~~ 283 (608)
T KOG4212|consen 282 FD 283 (608)
T ss_pred cc
Confidence 44
No 46
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.74 E-value=7e-17 Score=135.30 Aligned_cols=157 Identities=21% Similarity=0.299 Sum_probs=120.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC-CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCCC
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~~ 84 (276)
.--|.+.+|||++|+++|.+||+.|+ |..+.+... ++..|-|||+|.++|++++|++ .+-..+..+.|.|..+....
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCcc
Confidence 34677899999999999999999995 888888764 8999999999999999999999 88889999999998876544
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeE-EEEeec---CCCCeEEEEeCCHHHHHH
Q 023820 85 GRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRD---GSGTTGIVDYTNYDDMKH 160 (276)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~-~~~~~~---~~~~~~fv~f~~~~~a~~ 160 (276)
.... .+..... .......|-+.+||+.|+++||.++|.-.-.+.. +.+..+ +..+-|||+|++.+.|++
T Consensus 88 ~d~~-~~~~g~~------s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~ 160 (510)
T KOG4211|consen 88 ADWV-MRPGGPN------SSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEI 160 (510)
T ss_pred cccc-ccCCCCC------CCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHH
Confidence 3211 1110000 1123344889999999999999999987766655 334444 355689999999999999
Q ss_pred HHHhcCCceecc
Q 023820 161 AIKKLDDSEFRN 172 (276)
Q Consensus 161 a~~~l~~~~~~g 172 (276)
|+.. |...|+.
T Consensus 161 Al~r-hre~iGh 171 (510)
T KOG4211|consen 161 ALGR-HRENIGH 171 (510)
T ss_pred HHHH-HHHhhcc
Confidence 9984 4444444
No 47
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=6.9e-18 Score=116.46 Aligned_cols=80 Identities=38% Similarity=0.564 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
+.++||||+||+..++|++|.+||+.+|+|..|.|-. +..+-|||||+|...++|..|+..+||+.+++++|.+.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 4679999999999999999999999999999998822 3456799999999999999999999999999999999997
Q ss_pred cCC
Q 023820 81 HGG 83 (276)
Q Consensus 81 ~~~ 83 (276)
.+-
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 643
No 48
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.73 E-value=2.8e-17 Score=145.48 Aligned_cols=126 Identities=24% Similarity=0.334 Sum_probs=99.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~--G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
..++|||+||+.++++++|+++|+.| |+|..|.+. ++||||+|.+.++|++|++.|||..|.|+.|.|.|+++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 35789999999999999999999999 999999887 67999999999999999999999999999999999986
Q ss_pred CCCCCCCC--CCCC--------CCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCee
Q 023820 83 GRGRSSSD--RHSS--------HSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVC 135 (276)
Q Consensus 83 ~~~~~~~~--~~~~--------~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~ 135 (276)
........ .... ..............+++++|+++..++..+.++|..+|.+.
T Consensus 307 ~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 307 VDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred CCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCcccc
Confidence 54321100 0000 00001122334566799999999999999999999988654
No 49
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.73 E-value=7.3e-17 Score=120.63 Aligned_cols=71 Identities=24% Similarity=0.271 Sum_probs=64.6
Q ss_pred cEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeec
Q 023820 109 YLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 183 (276)
Q Consensus 109 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~ 183 (276)
.|.|.||.+.++.++|..+|++||.|.+|.|..|. ..|||||.|....+|+.|+++|+|..++| ..++|..
T Consensus 15 SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldg----RelrVq~ 89 (256)
T KOG4207|consen 15 SLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDG----RELRVQM 89 (256)
T ss_pred eEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecc----ceeeehh
Confidence 49999999999999999999999999999999885 56899999999999999999999999999 5555553
No 50
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.73 E-value=3.9e-17 Score=128.96 Aligned_cols=79 Identities=22% Similarity=0.323 Sum_probs=73.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCCCC
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRG 85 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~~~ 85 (276)
.++|||+|||+.+++++|+++|+.||+|..|.|..++...|||||+|.++++|+.||. |||..|.|+.|.|.++.....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~~ 82 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQL 82 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCCC
Confidence 5899999999999999999999999999999998877778999999999999999997 999999999999999876543
No 51
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.71 E-value=2.1e-17 Score=107.56 Aligned_cols=68 Identities=44% Similarity=0.826 Sum_probs=63.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEE
Q 023820 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (276)
Q Consensus 9 l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~ 76 (276)
|||+|||+++|+++|+++|++||.|..+.+.. .+...++|||+|.+.++|+.|+..|||..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999965 467789999999999999999999999999999885
No 52
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.71 E-value=1.8e-16 Score=138.16 Aligned_cols=175 Identities=22% Similarity=0.279 Sum_probs=135.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
+..+.|+|+|||..+..++|..+|..||+|..|.|+.. -..|+|+|.++.+|.+|+..|....+...++.+.|+...
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~d 459 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPED 459 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcc---cceeeeeecCccchHHHHHHhchhhhccCccccccChhh
Confidence 34588999999999999999999999999999966522 225899999999999999999999999999999998754
Q ss_pred CCCCC--CCCC-----CC-------C-CC-CC-----CC----------CCCCCCCc-EEEeCCCCCCCHHHHHHHhhhc
Q 023820 84 RGRSS--SDRH-----SS-------H-SS-GR-----GR----------GVSRRSEY-LLVTGLPSSASWQDLKDHMRRA 131 (276)
Q Consensus 84 ~~~~~--~~~~-----~~-------~-~~-~~-----~~----------~~~~~~~~-l~v~nl~~~~~~~~l~~~f~~~ 131 (276)
..... .... .. . .. .+ .. .......+ |||.||++.++.++|...|...
T Consensus 460 vf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~ 539 (725)
T KOG0110|consen 460 VFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQ 539 (725)
T ss_pred hccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhc
Confidence 43311 0000 00 0 00 00 00 00112223 9999999999999999999999
Q ss_pred CCeeEEEEeecCCC-------CeEEEEeCCHHHHHHHHHhcCCceecccceeeEEee
Q 023820 132 GDVCFSQVFRDGSG-------TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 181 (276)
Q Consensus 132 g~i~~~~~~~~~~~-------~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~ 181 (276)
|.|..+.|...+.+ |||||+|.++++|+.|++.|+|+.+.|+..-..+..
T Consensus 540 G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 540 GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 99999988766544 899999999999999999999999999765554443
No 53
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.71 E-value=6.4e-16 Score=126.59 Aligned_cols=166 Identities=18% Similarity=0.277 Sum_probs=137.1
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCCC
Q 023820 6 SRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (276)
Q Consensus 6 ~~~l~v~nL~~~-~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~~ 84 (276)
++.|.|.||... +|++.|..+|.-||+|..|+|.... +..|+|+|.+..+|+.|++.|+|..|.|++|+|.+++...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk--kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK--KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC--CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 688999999665 9999999999999999999997654 3689999999999999999999999999999999998766
Q ss_pred CCCCCCCCCCCC-----------------CCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCe
Q 023820 85 GRSSSDRHSSHS-----------------SGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTT 147 (276)
Q Consensus 85 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~ 147 (276)
.+.........+ ..+....-+++.++++.|+|..+++++|++.|...|..........+...+
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~km 454 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKM 454 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcce
Confidence 554432221110 011112334556799999999999999999999999888777777767779
Q ss_pred EEEEeCCHHHHHHHHHhcCCceeccc
Q 023820 148 GIVDYTNYDDMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 148 ~fv~f~~~~~a~~a~~~l~~~~~~g~ 173 (276)
|++.+++.++|..|+-.+++..+++.
T Consensus 455 al~q~~sveeA~~ali~~hnh~lgen 480 (492)
T KOG1190|consen 455 ALPQLESVEEAIQALIDLHNHYLGEN 480 (492)
T ss_pred eecccCChhHhhhhccccccccCCCC
Confidence 99999999999999999999998874
No 54
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.70 E-value=3.8e-16 Score=121.39 Aligned_cols=81 Identities=23% Similarity=0.277 Sum_probs=74.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCCC
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~~ 84 (276)
...+|||+||++.+|+++|++||+.||+|.+|.|..++...++|||+|.++++|+.|+. |||..|.|++|.|.......
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y~ 82 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQYE 82 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcccc
Confidence 45899999999999999999999999999999999888888999999999999999997 99999999999999877554
Q ss_pred CC
Q 023820 85 GR 86 (276)
Q Consensus 85 ~~ 86 (276)
..
T Consensus 83 ~~ 84 (243)
T PLN03121 83 DE 84 (243)
T ss_pred cC
Confidence 43
No 55
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=6.7e-16 Score=102.67 Aligned_cols=78 Identities=37% Similarity=0.525 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
.+..|||.|||.++|.+++.++|..||.|.+|.|-.+...+|.|||.|++..+|.+|+..|+|..+.++.|.|-+-..
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 357899999999999999999999999999999977778899999999999999999999999999999999987543
No 56
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.1e-15 Score=117.26 Aligned_cols=80 Identities=39% Similarity=0.627 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---cCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~---~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
..+++|-|.||+.++++++|.+||.+||.|..|.|. .+|.++|||||.|...++|++|+..|||.-++.-.|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 357899999999999999999999999999999994 47899999999999999999999999999999999999999
Q ss_pred cCC
Q 023820 81 HGG 83 (276)
Q Consensus 81 ~~~ 83 (276)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 764
No 57
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.64 E-value=6.6e-15 Score=122.02 Aligned_cols=139 Identities=31% Similarity=0.513 Sum_probs=108.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
.++|||+|||+.+++++|.++|..||.|..+.+.. ++..+|||||+|.+.++|..|+..|+|..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999988855 468999999999999999999999999999999999999763
Q ss_pred --CCCCCCCCC-C---CCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC
Q 023820 83 --GRGRSSSDR-H---SSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS 144 (276)
Q Consensus 83 --~~~~~~~~~-~---~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 144 (276)
......... . .................+++.+++..++..++...|..+|.+..+.+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 111111100 0 0001111222334455599999999999999999999999997766655543
No 58
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=1.2e-15 Score=131.02 Aligned_cols=180 Identities=21% Similarity=0.357 Sum_probs=133.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
..+.|||+|||..+++.++.++...||+++...+.. ++.++||||.+|.++.-...|+..|||+.+.+..|.|+.|.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 357899999999999999999999999999988844 46789999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCC--C-CCCCC-CC--CCCCCCCCcEEEeCC--CCCC-CH-------HHHHHHhhhcCCeeEEEEeec-C-
Q 023820 82 GGRGRSSSDRH--S-SHSSG-RG--RGVSRRSEYLLVTGL--PSSA-SW-------QDLKDHMRRAGDVCFSQVFRD-G- 143 (276)
Q Consensus 82 ~~~~~~~~~~~--~-~~~~~-~~--~~~~~~~~~l~v~nl--~~~~-~~-------~~l~~~f~~~g~i~~~~~~~~-~- 143 (276)
........... + ...+- .. .....++..|.+.|+ |.+. .+ ++++..+.+||.|..|.+..+ .
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~ 447 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPD 447 (500)
T ss_pred ccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCC
Confidence 66555443333 1 00000 00 112222333444443 1111 22 456667789999999999877 2
Q ss_pred -----CCCeEEEEeCCHHHHHHHHHhcCCceeccccee-eEEeeecc
Q 023820 144 -----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR-AYVRVREY 184 (276)
Q Consensus 144 -----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~-~~i~~~~~ 184 (276)
..|..||+|.+.++++.|+++|+|.++.|+..- .+..++.+
T Consensus 448 ~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY 494 (500)
T KOG0120|consen 448 ENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKY 494 (500)
T ss_pred CCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHHh
Confidence 235799999999999999999999999997763 34444443
No 59
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.62 E-value=1.1e-15 Score=99.43 Aligned_cols=68 Identities=34% Similarity=0.727 Sum_probs=60.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC--CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEE
Q 023820 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (276)
Q Consensus 9 l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~--~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~ 76 (276)
|||+|||+.+++++|.++|+.||.|..+.+... +..+++|||+|.++++|..|+..++|..|.|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999653 45679999999999999999999999999999874
No 60
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.62 E-value=5e-15 Score=124.86 Aligned_cols=82 Identities=32% Similarity=0.520 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCC--ceEEEEE
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVEL 79 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g--~~i~v~~ 79 (276)
..++|||+|||+.+|+++|+++|++||+|..|.|+. ++.+++||||+|.+.++|++||+.||+..+.+ ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 457899999999999999999999999999999864 46778999999999999999999999998876 7999999
Q ss_pred ccCCCCC
Q 023820 80 AHGGRGR 86 (276)
Q Consensus 80 a~~~~~~ 86 (276)
+......
T Consensus 272 a~~~~~~ 278 (346)
T TIGR01659 272 AEEHGKA 278 (346)
T ss_pred CCccccc
Confidence 8865443
No 61
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=1.7e-15 Score=120.87 Aligned_cols=83 Identities=23% Similarity=0.444 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec-CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~-~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
...+.|+|.|||....+.||+.+|++||.|.+|.|+. +..+|||+||+|++++||++|-.+|||..|.|++|.|..+..
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 4568999999999999999999999999999999976 457899999999999999999999999999999999999886
Q ss_pred CCCC
Q 023820 83 GRGR 86 (276)
Q Consensus 83 ~~~~ 86 (276)
....
T Consensus 174 rV~n 177 (376)
T KOG0125|consen 174 RVHN 177 (376)
T ss_pred hhcc
Confidence 6443
No 62
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=2.1e-15 Score=105.23 Aligned_cols=79 Identities=27% Similarity=0.489 Sum_probs=73.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
-.|||+++.+.+|+++|.+.|..||+|+.|.|.. ++..+|||+|+|++.++|++|+..|||..|.|+.|.|.|+-..
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 3689999999999999999999999999999954 6788999999999999999999999999999999999998755
Q ss_pred CC
Q 023820 84 RG 85 (276)
Q Consensus 84 ~~ 85 (276)
..
T Consensus 153 gp 154 (170)
T KOG0130|consen 153 GP 154 (170)
T ss_pred CC
Confidence 43
No 63
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.60 E-value=8.5e-15 Score=120.10 Aligned_cols=175 Identities=17% Similarity=0.223 Sum_probs=131.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCC--ccCCceEEEEEc
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY--DFDGHRLRVELA 80 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~--~~~g~~i~v~~a 80 (276)
..++..|.++|||++++|++|.+++.+||.|..+.+. +.+..|||+|.+.++|...+...... .+.|++|.|+|+
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~l---kGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~s 101 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLML---KGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYS 101 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeee---ccchhhhhhhcchhhhhheeecccccCccccCcceeehhh
Confidence 3588999999999999999999999999999999887 45669999999999998866654443 366899999887
Q ss_pred cCCCCCCCCCCC------------------CCCCC-CCCCCC-CCCCCc--EEEeCCCCCCCHHHHHHHhhhcCCeeEEE
Q 023820 81 HGGRGRSSSDRH------------------SSHSS-GRGRGV-SRRSEY--LLVTGLPSSASWQDLKDHMRRAGDVCFSQ 138 (276)
Q Consensus 81 ~~~~~~~~~~~~------------------~~~~~-~~~~~~-~~~~~~--l~v~nl~~~~~~~~l~~~f~~~g~i~~~~ 138 (276)
....-....... ..... ....+. +.++.. ++|+++-..++-+.|.++|.+||.|..+.
T Consensus 102 n~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIi 181 (492)
T KOG1190|consen 102 NHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKII 181 (492)
T ss_pred hHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEE
Confidence 632111110000 00000 000011 112222 78899999999999999999999999998
Q ss_pred EeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 139 VFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 139 ~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
.....++.-|.|+|.+...|+.|...|+|..|.+..+.-+|.
T Consensus 182 TF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId 223 (492)
T KOG1190|consen 182 TFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRID 223 (492)
T ss_pred EEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEee
Confidence 888877778999999999999999999999887754444443
No 64
>PLN03213 repressor of silencing 3; Provisional
Probab=99.59 E-value=6.9e-15 Score=123.44 Aligned_cols=77 Identities=19% Similarity=0.396 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCH--HHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA--RDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~--e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
....+||||||++.+++++|..+|..||.|..|.|+.... +|||||+|... .++.+|+..|||..|.|+.|+|+.|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG-RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC-CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 4568999999999999999999999999999999986433 99999999987 78999999999999999999999987
No 65
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.9e-15 Score=120.67 Aligned_cols=86 Identities=22% Similarity=0.348 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.|.+.|||..|.|-+++++|.-+|+.||.|..|.++. ++.+..||||+|++.++|++|+-.|++..|+++.|.|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 5789999999999999999999999999999999954 6788999999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 023820 81 HGGRGRSSS 89 (276)
Q Consensus 81 ~~~~~~~~~ 89 (276)
+...+..+.
T Consensus 317 QSVsk~k~r 325 (479)
T KOG0415|consen 317 QSVSKVKYR 325 (479)
T ss_pred hhhhhhhcc
Confidence 876554333
No 66
>smart00362 RRM_2 RNA recognition motif.
Probab=99.58 E-value=1.5e-14 Score=94.06 Aligned_cols=70 Identities=46% Similarity=0.848 Sum_probs=64.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC-CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEE
Q 023820 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (276)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v 77 (276)
+|+|+|||+.+++++|+++|++||+|..+.+..+ +.+.++|||+|.+.++|+.|+..++|..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 5899999999999999999999999999988654 456799999999999999999999999999999887
No 67
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=8.4e-14 Score=112.85 Aligned_cols=76 Identities=25% Similarity=0.502 Sum_probs=69.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
-+.|||..+.++.++++|+..|+-||+|..|.+.. ...++||+||+|.+..+-..|+..||=..++|+.|+|..+.
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 36899999999999999999999999999999954 45789999999999999999999999999999999997654
No 68
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=6.9e-15 Score=112.54 Aligned_cols=76 Identities=26% Similarity=0.461 Sum_probs=69.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
++|||+||+|.++.+.|++.|++||+|++..++. +++++||+||+|.+.++|..|++ --+-.|+|+...|.+|.-.
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA~lg 91 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLASLG 91 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchhhhc
Confidence 7899999999999999999999999999988854 57999999999999999999999 3456799999999998763
No 69
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=4.4e-16 Score=114.20 Aligned_cols=83 Identities=27% Similarity=0.509 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
+.+.-|||+|||..+||.+|.-.|++||+|++|.|.. +|+++||||+.|++..+...|+..|||..|.|+.|+|.+.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4567899999999999999999999999999999965 6899999999999999999999999999999999999987
Q ss_pred cCCCCC
Q 023820 81 HGGRGR 86 (276)
Q Consensus 81 ~~~~~~ 86 (276)
.....+
T Consensus 113 ~~Yk~p 118 (219)
T KOG0126|consen 113 SNYKKP 118 (219)
T ss_pred ccccCC
Confidence 665543
No 70
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.56 E-value=2e-13 Score=101.04 Aligned_cols=77 Identities=26% Similarity=0.366 Sum_probs=68.2
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEee
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 181 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~ 181 (276)
....|||+|||..+++++|+++|.+||+|..+.++.+. ..+||||+|.+.++|+.|++.|++..|.| ..+.+
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G----r~l~V 108 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG----RHIRV 108 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC----EEEEE
Confidence 44569999999999999999999999999999998875 45799999999999999999999999999 56666
Q ss_pred ecccC
Q 023820 182 REYDH 186 (276)
Q Consensus 182 ~~~~~ 186 (276)
.....
T Consensus 109 ~~a~~ 113 (144)
T PLN03134 109 NPAND 113 (144)
T ss_pred EeCCc
Confidence 66544
No 71
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.7e-13 Score=108.22 Aligned_cols=69 Identities=23% Similarity=0.291 Sum_probs=63.6
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeec----CCCCeEEEEeCCHHHHHHHHHhcCCceeccc
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD----GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~----~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 173 (276)
.+-.+|||+-|+.++++.+|+..|..||+|..+.|+.+ .+.|||||+|++..+...|.+..+|..|+|+
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgr 171 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR 171 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCc
Confidence 34456999999999999999999999999999999888 4668999999999999999999999999993
No 72
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.51 E-value=1e-13 Score=85.76 Aligned_cols=56 Identities=38% Similarity=0.661 Sum_probs=50.8
Q ss_pred HHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 23 VEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 23 l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
|.++|++||+|..+.+.... .++|||+|.+.++|..|+..|||..|.|++|.|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997544 589999999999999999999999999999999986
No 73
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.51 E-value=1.8e-13 Score=89.46 Aligned_cols=72 Identities=42% Similarity=0.815 Sum_probs=65.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCC--CCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP--RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~--~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
+|+|+|||+.+++++|.++|+.||.|..+.+..+. ...++|||+|.+.++|+.|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999997543 4578999999999999999999999999999999864
No 74
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.1e-14 Score=108.51 Aligned_cols=83 Identities=35% Similarity=0.623 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
+..++|||++|...+++.-|...|-+||.|.+|.++. +.+.+|||||+|...|+|.+|+..||+.+|.|+.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 4568999999999999999999999999999999965 4688999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 023820 81 HGGRGR 86 (276)
Q Consensus 81 ~~~~~~ 86 (276)
++....
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 875543
No 75
>smart00360 RRM RNA recognition motif.
Probab=99.48 E-value=2.1e-13 Score=88.32 Aligned_cols=67 Identities=45% Similarity=0.804 Sum_probs=61.7
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEE
Q 023820 11 VGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (276)
Q Consensus 11 v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v 77 (276)
|+|||..+++++|+++|++||.|..+.+.. ++.++++|||+|.+.++|..|+..|++..+.|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 689999999999999999999999999854 3567899999999999999999999999999999887
No 76
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=9.3e-14 Score=115.32 Aligned_cols=76 Identities=32% Similarity=0.569 Sum_probs=70.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCCCCC
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~~~~ 86 (276)
..|||+||+.++|++.|+++|++||.|..|+.+ +.||||.|.+.++|.+|++.|||..|+|..|.|.+|++..+.
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-----rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-----RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecc-----cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 679999999999999999999999999999887 669999999999999999999999999999999999976554
Q ss_pred C
Q 023820 87 S 87 (276)
Q Consensus 87 ~ 87 (276)
.
T Consensus 335 k 335 (506)
T KOG0117|consen 335 K 335 (506)
T ss_pred c
Confidence 3
No 77
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.44 E-value=8.5e-13 Score=85.63 Aligned_cols=64 Identities=22% Similarity=0.425 Sum_probs=59.4
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeec---CCCCeEEEEeCCHHHHHHHHHhcCCceeccc
Q 023820 110 LLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 110 l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 173 (276)
|||+|||..+++++|.++|.+||.+..+.+..+ ...++|||+|.+.++|+.|++.|+|..+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~ 67 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGR 67 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECcc
Confidence 799999999999999999999999999999886 2335999999999999999999999999984
No 78
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.43 E-value=6.3e-13 Score=113.80 Aligned_cols=79 Identities=33% Similarity=0.665 Sum_probs=74.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
+.|||||||+++++++|.++|+..|.|.++++.. +|..+||||++|.+.++|..|+..|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999999955 5789999999999999999999999999999999999998754
Q ss_pred CC
Q 023820 84 RG 85 (276)
Q Consensus 84 ~~ 85 (276)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 79
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.42 E-value=1.4e-11 Score=100.38 Aligned_cols=172 Identities=18% Similarity=0.212 Sum_probs=132.3
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 4 RASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 4 ~~~~~l~v~nL~~~-~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
.+.+.++|-+|... ++-+.|.++|..||.|..|+++++. .|.|.|++.+...++.|+..||+..+.|.+|.|.+++.
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 46788999999775 7888999999999999999998654 57899999999999999999999999999999998874
Q ss_pred CCCCCCCC--------CCCCCCC-----------CCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCC-eeEEEEeec
Q 023820 83 GRGRSSSD--------RHSSHSS-----------GRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRD 142 (276)
Q Consensus 83 ~~~~~~~~--------~~~~~~~-----------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~-i~~~~~~~~ 142 (276)
.-..+... ....+.. ....-...+++.|+.-|.|..+|++.|.++|...+. ...+++...
T Consensus 363 ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~ 442 (494)
T KOG1456|consen 363 NFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPL 442 (494)
T ss_pred cccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeecc
Confidence 33222100 0000000 011223445666999999999999999999987663 455666555
Q ss_pred CCC--CeEEEEeCCHHHHHHHHHhcCCceecccceee
Q 023820 143 GSG--TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 177 (276)
Q Consensus 143 ~~~--~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 177 (276)
++. ..+.++|++.++|.+|+..+|...+.+....-
T Consensus 443 kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~ 479 (494)
T KOG1456|consen 443 KSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSF 479 (494)
T ss_pred cccccccceeeeehHHHHHHHHHHhccccccCCCCCC
Confidence 433 36899999999999999999999998865433
No 80
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.41 E-value=4e-13 Score=105.82 Aligned_cols=79 Identities=41% Similarity=0.675 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
++++++|+|+||.+.++.++|+..|++||+|..++|. ++|+||.|.-.++|..|+..|||.+|.|++++|+.+..
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeee-----cceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 3588999999999999999999999999999999998 88999999999999999999999999999999999886
Q ss_pred CCCC
Q 023820 83 GRGR 86 (276)
Q Consensus 83 ~~~~ 86 (276)
.-..
T Consensus 150 rlrt 153 (346)
T KOG0109|consen 150 RLRT 153 (346)
T ss_pred cccc
Confidence 5443
No 81
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=7.2e-12 Score=106.30 Aligned_cols=163 Identities=22% Similarity=0.335 Sum_probs=112.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec-C-----CCCCc---eEEEEecCHHHHHHHHHhcCCCccCCceE
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-P-----PRPPG---YAFVEFEEARDAEDAIRGRDGYDFDGHRL 75 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~-~-----~~~~g---~afV~f~~~e~a~~A~~~lng~~~~g~~i 75 (276)
-++.|||++||+.++|++|...|..||.+. |.... . ..++| |+|+.|+++.+++..+....- ....+
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~ 333 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNY 333 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccce
Confidence 358999999999999999999999999865 33321 1 13456 999999999999988776532 22222
Q ss_pred EEEEccCCCCCC------CCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhh-hcCCeeEEEEeecC----C
Q 023820 76 RVELAHGGRGRS------SSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMR-RAGDVCFSQVFRDG----S 144 (276)
Q Consensus 76 ~v~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~g~i~~~~~~~~~----~ 144 (276)
.+.......+.. +......+.-. ....-.+..+||||+||-.++.++|..+|. .||.|.++.|..|+ +
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d-~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYP 412 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLD-HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYP 412 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhc-cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCC
Confidence 222222111111 11111111111 222334556699999999999999999998 79999999999884 5
Q ss_pred CCeEEEEeCCHHHHHHHHHh----cCCceecc
Q 023820 145 GTTGIVDYTNYDDMKHAIKK----LDDSEFRN 172 (276)
Q Consensus 145 ~~~~fv~f~~~~~a~~a~~~----l~~~~~~g 172 (276)
.|-|=|+|.+..+-.+||.+ |+...+..
T Consensus 413 kGaGRVtFsnqqsYi~AIsarFvql~h~d~~K 444 (520)
T KOG0129|consen 413 KGAGRVTFSNQQAYIKAISARFVQLDHTDIDK 444 (520)
T ss_pred CCcceeeecccHHHHHHHhhheEEEeccccce
Confidence 67899999999999999986 44444443
No 82
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.37 E-value=2.9e-11 Score=100.51 Aligned_cols=75 Identities=21% Similarity=0.390 Sum_probs=65.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--ecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~--~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
...++||.||...+....|.+.|.--|.|+.|.+ .+.+.++|+|.|+|.++-.|..|+..|++.-+.+++..+.+
T Consensus 214 l~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 214 LHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred ccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 3468999999999999999999999999988877 45678899999999999999999999997776666666655
No 83
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=6.9e-12 Score=92.60 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=70.0
Q ss_pred CCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC-CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeeccc
Q 023820 107 SEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 185 (276)
Q Consensus 107 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~-~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~~ 185 (276)
...|||+|||.++.+.+|+++|-+||.|..|.+...+. ..||||+|+++.+|+.||..-+|..++| +.++|+..+
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg----~rLRVEfpr 81 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDG----CRLRVEFPR 81 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCc----ceEEEEecc
Confidence 34599999999999999999999999999999866543 4699999999999999999999999999 888898887
Q ss_pred CCC
Q 023820 186 HRR 188 (276)
Q Consensus 186 ~~r 188 (276)
..+
T Consensus 82 ggr 84 (241)
T KOG0105|consen 82 GGR 84 (241)
T ss_pred CCC
Confidence 765
No 84
>smart00361 RRM_1 RNA recognition motif.
Probab=99.35 E-value=4.6e-12 Score=82.03 Aligned_cols=58 Identities=28% Similarity=0.546 Sum_probs=51.6
Q ss_pred HHHHHHHHh----hcCCeeEEE-Eec---C--CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEE
Q 023820 20 EREVEDLFY----KYGPIAHID-LKI---P--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (276)
Q Consensus 20 ~~~l~~~F~----~~G~v~~v~-~~~---~--~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v 77 (276)
+++|.++|. .||.|..|. +.. + +.++|||||+|.+.++|.+|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999999 999999985 422 2 678999999999999999999999999999999986
No 85
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.33 E-value=4.3e-11 Score=97.56 Aligned_cols=161 Identities=15% Similarity=0.212 Sum_probs=125.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhc--CCCccCCceEEEEEcc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR--DGYDFDGHRLRVELAH 81 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~l--ng~~~~g~~i~v~~a~ 81 (276)
.++-.|.|++|-..+++.+|.+.++.||+|..+.+. ..+..|.|+|++.+.|+.++... |...+.|+..-+.++.
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~---P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NySt 105 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCM---PHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYST 105 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEec---cccceeeeeeccccchhhheehhccCcccccCchhhcccch
Confidence 567789999999999999999999999999998875 33568999999999999998742 3456778887777764
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCc---EEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHH
Q 023820 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEY---LLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDM 158 (276)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a 158 (276)
........ ..+...+. +.|-|.-+.+|.+.|-.++...|+|..|.|++. ++..|.|+|++.+.|
T Consensus 106 sq~i~R~g------------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~A 172 (494)
T KOG1456|consen 106 SQCIERPG------------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVA 172 (494)
T ss_pred hhhhccCC------------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHH
Confidence 33221111 01122233 334577788999999999999999999999887 666899999999999
Q ss_pred HHHHHhcCCceecccceeeEEe
Q 023820 159 KHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 159 ~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
++|...|||..|-....+.+|.
T Consensus 173 qrAk~alNGADIYsGCCTLKIe 194 (494)
T KOG1456|consen 173 QRAKAALNGADIYSGCCTLKIE 194 (494)
T ss_pred HHHHhhcccccccccceeEEEE
Confidence 9999999999887544444433
No 86
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.32 E-value=1.2e-11 Score=98.07 Aligned_cols=73 Identities=14% Similarity=0.253 Sum_probs=64.9
Q ss_pred CCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC-CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecc
Q 023820 107 SEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 184 (276)
Q Consensus 107 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~ 184 (276)
..+|||+|||+.+++++|+++|..||+|..+.+..+. ..+||||+|.++++|+.|+. |+|..|.| ..+.+...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~g----r~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVD----QSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCC----ceEEEEec
Confidence 3469999999999999999999999999999998886 56899999999999999996 99999999 55555543
No 87
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=8.6e-12 Score=99.98 Aligned_cols=73 Identities=21% Similarity=0.237 Sum_probs=65.5
Q ss_pred CCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC--CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeec
Q 023820 107 SEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 183 (276)
Q Consensus 107 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~--~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~ 183 (276)
.+.|+|.|+|+...+.||..+|.+||.|.+|.|+.+. .+|||||+|++.++|++|..+|||..+.| ++|.|..
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEG----RkIEVn~ 170 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEG----RKIEVNN 170 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeec----eEEEEec
Confidence 3449999999999999999999999999999998884 66899999999999999999999999999 5555553
No 88
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.29 E-value=2e-11 Score=79.22 Aligned_cols=64 Identities=22% Similarity=0.427 Sum_probs=57.7
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC---CCeEEEEeCCHHHHHHHHHhcCCceeccc
Q 023820 110 LLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 110 l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 173 (276)
|+|+|||+.+++++|.++|..+|.|..+.+..+.. .++|||+|.+.++|..|+..+++..++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~ 67 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGR 67 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCE
Confidence 78999999999999999999999999999998864 46999999999999999999999999984
No 89
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=3.2e-11 Score=80.52 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=64.0
Q ss_pred CCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC-CCCeEEEEeCCHHHHHHHHHhcCCceeccc
Q 023820 103 VSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-SGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 103 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 173 (276)
++..+..|||.|||..++.++.-++|++||+|..+.+-..+ ..|.|||.|++..+|.+|++.|.|..+.+.
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~r 85 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNR 85 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCc
Confidence 44455569999999999999999999999999999997664 568999999999999999999999999994
No 90
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.29 E-value=1.1e-11 Score=109.62 Aligned_cols=76 Identities=32% Similarity=0.593 Sum_probs=72.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCCC
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~~ 84 (276)
++||||++|+.++++++|.++|+.||+|..|.++ .++++|||.+....+|.+|+..|++..+.++.|+|.|+....
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li---~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI---PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeec---cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 5899999999999999999999999999999997 568999999999999999999999999999999999998654
No 91
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.28 E-value=1.5e-11 Score=100.54 Aligned_cols=168 Identities=17% Similarity=0.224 Sum_probs=115.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcC----CeeEEEE-ec-CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYG----PIAHIDL-KI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G----~v~~v~~-~~-~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
.-.|-+++||.++++.++.+||.+-- .+..|-+ .. +++..|-|||.|..+++|+.||. -|...++.+.|.+..
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHHH
Confidence 34567789999999999999997322 2333433 33 78899999999999999999998 566666666665543
Q ss_pred ccCCCCC--------C--CCCCCCCCC---CCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCC-eeE--EEEeec-
Q 023820 80 AHGGRGR--------S--SSDRHSSHS---SGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGD-VCF--SQVFRD- 142 (276)
Q Consensus 80 a~~~~~~--------~--~~~~~~~~~---~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~-i~~--~~~~~~- 142 (276)
+....-+ . ......... ...........+||-+.+||+..+.++|.++|+.|.. |.. |.+..+
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~ 319 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG 319 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC
Confidence 3211100 0 000000000 0011122334667999999999999999999998874 333 555555
Q ss_pred --CCCCeEEEEeCCHHHHHHHHHhcCCceecccc
Q 023820 143 --GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 174 (276)
Q Consensus 143 --~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 174 (276)
.+.|-|||+|.+.++|..|..+.+++....++
T Consensus 320 qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RY 353 (508)
T KOG1365|consen 320 QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRY 353 (508)
T ss_pred CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccce
Confidence 35578999999999999999999988886633
No 92
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=2.1e-11 Score=84.61 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=67.6
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
..+.+|||+||+.-+++++|-++|.++|+|..|.+-.|. +-|||||+|...++|..|++.+++..+.. +.|+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd----r~ir 109 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD----RPIR 109 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc----ccee
Confidence 356679999999999999999999999999999887764 44799999999999999999999999999 5666
Q ss_pred eeccc
Q 023820 181 VREYD 185 (276)
Q Consensus 181 ~~~~~ 185 (276)
+++..
T Consensus 110 ~D~D~ 114 (153)
T KOG0121|consen 110 IDWDA 114 (153)
T ss_pred eeccc
Confidence 66544
No 93
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=3.8e-11 Score=103.59 Aligned_cols=167 Identities=22% Similarity=0.357 Sum_probs=129.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc-----------C-CeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKY-----------G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~-----------G-~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~ 71 (276)
.....++|++||+.++++.+..+|..- | .|..+.+. ..+++|||+|.+.+.|..|+. +++..+.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n---~~~nfa~ie~~s~~~at~~~~-~~~~~f~ 248 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN---LEKNFAFIEFRSISEATEAMA-LDGIIFE 248 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec---ccccceeEEecCCCchhhhhc-ccchhhC
Confidence 456789999999999999999999864 2 25556554 457899999999999999999 9999999
Q ss_pred CceEEEEEccCCCCCCCCCCCCC----CCCC-CCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC--
Q 023820 72 GHRLRVELAHGGRGRSSSDRHSS----HSSG-RGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-- 144 (276)
Q Consensus 72 g~~i~v~~a~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~-- 144 (276)
|.++++.--......+....... .... .....+.....++|++||..+++.++.++...||++....+..+..
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 99998865544333322111110 1111 1122333444599999999999999999999999999988877754
Q ss_pred --CCeEEEEeCCHHHHHHHHHhcCCceecccc
Q 023820 145 --GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 174 (276)
Q Consensus 145 --~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 174 (276)
.+|||.+|.++.-...|+..|||+.+++..
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~ 360 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKK 360 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCce
Confidence 469999999999999999999999999843
No 94
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=2.6e-12 Score=97.29 Aligned_cols=138 Identities=20% Similarity=0.289 Sum_probs=111.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
..+||||+||...++++-|.++|-+-|+|..|.|.. ++..+ ||||+|.++.++.-|++.|||..+.+.+|+|.+-.+
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 458999999999999999999999999999999954 44445 999999999999999999999999999999987554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC---CCeEEEEeCCHHHHH
Q 023820 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMK 159 (276)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~ 159 (276)
.... -|...++.+.+.+.|...|++..+.+..+.+ ..++|+.+.-....-
T Consensus 87 ~sha---------------------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P 139 (267)
T KOG4454|consen 87 NSHA---------------------------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVP 139 (267)
T ss_pred CCcc---------------------------hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCc
Confidence 3211 1344567788888899999998888876643 457888887777777
Q ss_pred HHHHhcCCcee
Q 023820 160 HAIKKLDDSEF 170 (276)
Q Consensus 160 ~a~~~l~~~~~ 170 (276)
.++..+.+...
T Consensus 140 ~~~~~y~~l~~ 150 (267)
T KOG4454|consen 140 FALDLYQGLEL 150 (267)
T ss_pred HHhhhhcccCc
Confidence 77777665544
No 95
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=7.7e-12 Score=112.22 Aligned_cols=155 Identities=23% Similarity=0.325 Sum_probs=129.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC--CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~--~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
..+.|||++||+..+++.+|+..|..+|.|..|.|... +....||||.|.+...+-.|...+.+..|..-.+.+.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 45789999999999999999999999999999999654 4445699999999999999999999888765555554432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHH
Q 023820 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHA 161 (276)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a 161 (276)
. .....+.+++++|+..+....|...|..||.|..|.+-.... |++|.|++...|+.|
T Consensus 450 ~--------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~--yayi~yes~~~aq~a 507 (975)
T KOG0112|consen 450 P--------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP--YAYIQYESPPAAQAA 507 (975)
T ss_pred c--------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc--ceeeecccCccchhh
Confidence 1 122344599999999999999999999999999887765544 999999999999999
Q ss_pred HHhcCCceecccceeeEEeee
Q 023820 162 IKKLDDSEFRNAFSRAYVRVR 182 (276)
Q Consensus 162 ~~~l~~~~~~g~~~~~~i~~~ 182 (276)
+..|.|..+++...+ +.|.
T Consensus 508 ~~~~rgap~G~P~~r--~rvd 526 (975)
T KOG0112|consen 508 THDMRGAPLGGPPRR--LRVD 526 (975)
T ss_pred HHHHhcCcCCCCCcc--cccc
Confidence 999999999986544 4444
No 96
>PLN03213 repressor of silencing 3; Provisional
Probab=99.22 E-value=4.8e-11 Score=100.72 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=66.6
Q ss_pred cEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCH--HHHHHHHHhcCCceecccceeeEEeeeccc
Q 023820 109 YLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNY--DDMKHAIKKLDDSEFRNAFSRAYVRVREYD 185 (276)
Q Consensus 109 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~--~~a~~a~~~l~~~~~~g~~~~~~i~~~~~~ 185 (276)
.||||||++.+++++|...|..||.|..|.|+....+|||||+|... .++.+||..|+|..+.| ..++|..++
T Consensus 12 RIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKG----R~LKVNKAK 86 (759)
T PLN03213 12 RLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKG----GRLRLEKAK 86 (759)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecC----ceeEEeecc
Confidence 49999999999999999999999999999999888889999999987 78999999999999999 666666443
No 97
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=7.5e-11 Score=82.62 Aligned_cols=75 Identities=21% Similarity=0.295 Sum_probs=65.8
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCC----CeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
...+.|||.++.+.+++++|.+.|..||+|..+.+..|... |||+|+|++.++|++|+..+||..+.|. .+.
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q----~v~ 145 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ----NVS 145 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC----cee
Confidence 34566999999999999999999999999999999888644 5899999999999999999999999994 444
Q ss_pred eec
Q 023820 181 VRE 183 (276)
Q Consensus 181 ~~~ 183 (276)
|++
T Consensus 146 VDw 148 (170)
T KOG0130|consen 146 VDW 148 (170)
T ss_pred EEE
Confidence 444
No 98
>smart00362 RRM_2 RNA recognition motif.
Probab=99.19 E-value=2.8e-10 Score=73.66 Aligned_cols=65 Identities=23% Similarity=0.392 Sum_probs=59.4
Q ss_pred cEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC--CCCeEEEEeCCHHHHHHHHHhcCCceeccc
Q 023820 109 YLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 109 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~--~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 173 (276)
+|+|.|||..+++++|.++|.+||++..+.+..+. ..++|||+|.+.++|+.|+..+++..+.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~ 67 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGR 67 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCE
Confidence 38999999999999999999999999999888765 457999999999999999999999999873
No 99
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=1e-10 Score=94.64 Aligned_cols=76 Identities=32% Similarity=0.589 Sum_probs=67.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHh-cCCCccCCceEEEEEccC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG-RDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~-lng~~~~g~~i~v~~a~~ 82 (276)
..-++|||+||-..+++.+|+++|.+||+|..|.+. ..+++|||+|.+.++|+.|... +|...|+|+.|.|.|..+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~---~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL---PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEee---cccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 455899999999999999999999999999999997 4467999999999999988776 566678999999999987
No 100
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.16 E-value=3.4e-10 Score=88.47 Aligned_cols=72 Identities=19% Similarity=0.283 Sum_probs=63.3
Q ss_pred CCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC-CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeec
Q 023820 107 SEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 183 (276)
Q Consensus 107 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~ 183 (276)
..+|+|+||++.+++++|+++|..||+|..|.+..+. .+++|||+|.++++++.|+. |+|..|.+. .|.+..
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~----~I~It~ 77 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQ----RVCITR 77 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCc----eEEEEe
Confidence 3569999999999999999999999999999999885 34699999999999999995 999999984 455554
No 101
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=2.6e-10 Score=88.11 Aligned_cols=76 Identities=24% Similarity=0.279 Sum_probs=67.7
Q ss_pred CCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeee
Q 023820 107 SEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 182 (276)
Q Consensus 107 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~ 182 (276)
.++|-|.||+.++++.+|+++|.+||.|..+.+..++. +|||||.|.+.++|.+||..|+|.-+++ .-++|+
T Consensus 189 ~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~----LILrvE 264 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN----LILRVE 264 (270)
T ss_pred cceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce----EEEEEE
Confidence 34599999999999999999999999999999999864 4699999999999999999999999887 666777
Q ss_pred cccC
Q 023820 183 EYDH 186 (276)
Q Consensus 183 ~~~~ 186 (276)
+..+
T Consensus 265 wskP 268 (270)
T KOG0122|consen 265 WSKP 268 (270)
T ss_pred ecCC
Confidence 6654
No 102
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=9e-11 Score=91.67 Aligned_cols=81 Identities=22% Similarity=0.486 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.+.|.|||-.||.+..+.+|.+.|-.||.|++.++.. +.+++.|+||.|.|+.+|+.||..|||..|+=+.|+|.+.
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 4679999999999999999999999999999988854 5789999999999999999999999999999999999886
Q ss_pred cCCC
Q 023820 81 HGGR 84 (276)
Q Consensus 81 ~~~~ 84 (276)
.++.
T Consensus 363 RPkd 366 (371)
T KOG0146|consen 363 RPKD 366 (371)
T ss_pred Cccc
Confidence 6543
No 103
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.11 E-value=3.2e-10 Score=85.55 Aligned_cols=79 Identities=28% Similarity=0.444 Sum_probs=71.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEE---ecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKY-GPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~-G~v~~v~~---~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
....++|..||.-+.+.+|..+|.+| |.|..+.+ ..+|.++|||||+|++++.|.-|-+.||+..|.|+.|.|.+.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45678999999999999999999988 77888887 458999999999999999999999999999999999999998
Q ss_pred cCC
Q 023820 81 HGG 83 (276)
Q Consensus 81 ~~~ 83 (276)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 655
No 104
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.10 E-value=2.2e-10 Score=84.57 Aligned_cols=81 Identities=21% Similarity=0.400 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEE---ecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAH-IDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~-v~~---~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.+..|||+||.+++++..|.+.|+.||.|.. -++ ..++.++++|||.|.+.|.+.+|+..|||..+..++|.|.++
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 3478999999999999999999999998865 122 335678899999999999999999999999999999999999
Q ss_pred cCCCC
Q 023820 81 HGGRG 85 (276)
Q Consensus 81 ~~~~~ 85 (276)
.....
T Consensus 175 ~k~~~ 179 (203)
T KOG0131|consen 175 FKKDT 179 (203)
T ss_pred EecCC
Confidence 76543
No 105
>smart00360 RRM RNA recognition motif.
Probab=99.08 E-value=1e-09 Score=70.68 Aligned_cols=62 Identities=19% Similarity=0.400 Sum_probs=56.7
Q ss_pred EeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceeccc
Q 023820 112 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 112 v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 173 (276)
|+|||..+++++|.++|.+||.|..+.+..+.. .++|||+|.+.++|..|+..+++..+.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~ 66 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGR 66 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCc
Confidence 578999999999999999999999999988754 57999999999999999999999999873
No 106
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=3.5e-10 Score=86.99 Aligned_cols=73 Identities=16% Similarity=0.227 Sum_probs=60.8
Q ss_pred CCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 107 SEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 107 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
.++||||+|++.+..+.|+..|++||+|+.+.++.|+ .+|||||.|.+.+.|.+|++. -+-.|+|+...+.+-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 3449999999999999999999999999999999885 457999999999999999984 344566755545443
No 107
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=1.3e-10 Score=99.52 Aligned_cols=156 Identities=21% Similarity=0.174 Sum_probs=98.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
-++.+|+|-|||..|++++|..+|+.||+|..|.. +....+.+||+|.|..+|+.|++.||+..+.|+.|+.......
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccc
Confidence 46789999999999999999999999999999655 3455789999999999999999999999999999982111100
Q ss_pred CCCCCCC--CCCCCCCCCCCCCCCCC-CcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHH
Q 023820 84 RGRSSSD--RHSSHSSGRGRGVSRRS-EYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKH 160 (276)
Q Consensus 84 ~~~~~~~--~~~~~~~~~~~~~~~~~-~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~ 160 (276)
....... -...........++... .--.++.|++..+..-++..+..+|.+.. ....... -.-|++|.+..++..
T Consensus 151 ~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~-hq~~~~~~~~~s~a~ 228 (549)
T KOG4660|consen 151 AMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGMLSPTRSSILLEHISSVDGSSPG-RETPLLN-HQRFVEFADNRSYAF 228 (549)
T ss_pred cchhcccchhhhhccchhhcCCCCCCcCCcceeeeccchhhhhhhcchhccCcccc-ccccchh-hhhhhhhccccchhh
Confidence 0000000 00000110011111111 11333348888888777777777777655 2111111 145677777777744
Q ss_pred HHH
Q 023820 161 AIK 163 (276)
Q Consensus 161 a~~ 163 (276)
+..
T Consensus 229 ~~~ 231 (549)
T KOG4660|consen 229 SEP 231 (549)
T ss_pred ccc
Confidence 443
No 108
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.4e-09 Score=88.34 Aligned_cols=76 Identities=21% Similarity=0.308 Sum_probs=68.1
Q ss_pred CCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCC----eEEEEeCCHHHHHHHHHhcCCceecccceeeE
Q 023820 103 VSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGT----TGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 178 (276)
Q Consensus 103 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~----~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 178 (276)
..++.+.|||..|.+.++.++|.-+|+.||.|..|.++.+...| ||||+|++.+++++|.-+|++..|.+ ++
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD----rR 310 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD----RR 310 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc----ce
Confidence 34456669999999999999999999999999999999997665 99999999999999999999999998 55
Q ss_pred Eeee
Q 023820 179 VRVR 182 (276)
Q Consensus 179 i~~~ 182 (276)
|.|+
T Consensus 311 IHVD 314 (479)
T KOG0415|consen 311 IHVD 314 (479)
T ss_pred EEee
Confidence 5555
No 109
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.03 E-value=4.2e-09 Score=68.39 Aligned_cols=64 Identities=23% Similarity=0.441 Sum_probs=59.5
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC---CCeEEEEeCCHHHHHHHHHhcCCceeccc
Q 023820 110 LLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 110 l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 173 (276)
|+|.|||..+++++|.++|..+|+|..+.+..+.. .++|||+|.+.++|..|++.+++..+.|.
T Consensus 2 i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~ 68 (74)
T cd00590 2 LFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGR 68 (74)
T ss_pred EEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 78999999999999999999999999999988763 67999999999999999999999998883
No 110
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.01 E-value=2.3e-09 Score=84.88 Aligned_cols=81 Identities=26% Similarity=0.498 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
...++|+|.|||..+++++|+++|..||.+..+.++. .+.+.|.|-|.|...++|..|++.+||..++|+++++....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 3457899999999999999999999999888887754 67889999999999999999999999999999999998876
Q ss_pred CCC
Q 023820 82 GGR 84 (276)
Q Consensus 82 ~~~ 84 (276)
...
T Consensus 161 ~~~ 163 (243)
T KOG0533|consen 161 SPS 163 (243)
T ss_pred Ccc
Confidence 543
No 111
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.99 E-value=1.3e-08 Score=86.26 Aligned_cols=166 Identities=18% Similarity=0.238 Sum_probs=112.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAH-IDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~-v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.+.-.|-+.+||+.||++||.+||+-.-.|.. |.++. .+.+.|-|||+|+++++|+.||. -|...|..+-|.|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehh
Confidence 35578999999999999999999997754444 33332 45678999999999999999999 6778888888888765
Q ss_pred cCCCC-----------C-CC------CCCCC--------------C---C-------------CC--C------------
Q 023820 81 HGGRG-----------R-SS------SDRHS--------------S---H-------------SS--G------------ 98 (276)
Q Consensus 81 ~~~~~-----------~-~~------~~~~~--------------~---~-------------~~--~------------ 98 (276)
..... . +. ..+.. . . .. .
T Consensus 180 s~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~ 259 (510)
T KOG4211|consen 180 SRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNY 259 (510)
T ss_pred HHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccccccc
Confidence 41000 0 00 00000 0 0 00 0
Q ss_pred -CC-----------CC-CCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC---CCCeEEEEeCCHHHHHHHH
Q 023820 99 -RG-----------RG-VSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAI 162 (276)
Q Consensus 99 -~~-----------~~-~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~---~~~~~fv~f~~~~~a~~a~ 162 (276)
.. .. ......++...+||...+..++..+|...-.+ .|.+...+ ..+-|+|+|.+.++|..|+
T Consensus 260 ~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Am 338 (510)
T KOG4211|consen 260 PVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAM 338 (510)
T ss_pred CCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhh
Confidence 00 00 00111458888999999999999999876655 45554443 4467999999999999998
Q ss_pred HhcCCceecc
Q 023820 163 KKLDDSEFRN 172 (276)
Q Consensus 163 ~~l~~~~~~g 172 (276)
. -++..+..
T Consensus 339 s-kd~anm~h 347 (510)
T KOG4211|consen 339 G-KDGANMGH 347 (510)
T ss_pred c-cCCcccCc
Confidence 7 34445544
No 112
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.97 E-value=4e-09 Score=65.01 Aligned_cols=49 Identities=20% Similarity=0.426 Sum_probs=44.2
Q ss_pred HHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceeccc
Q 023820 124 LKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 124 l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 173 (276)
|.++|++||+|..+.+.... +++|||+|.+.++|..|+..|+|..+.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~ 49 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGR 49 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 67899999999999998776 57999999999999999999999999994
No 113
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=9.3e-11 Score=86.48 Aligned_cols=74 Identities=19% Similarity=0.294 Sum_probs=66.7
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEee
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 181 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~ 181 (276)
.+..|||||||+.+|+.+|...|++||+|+.|.++.|.. .||||+.|++.....-|+..|||..|.| +.|+|
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g----RtirV 109 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG----RTIRV 109 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecc----eeEEe
Confidence 455699999999999999999999999999999999964 4699999999999999999999999999 56666
Q ss_pred ec
Q 023820 182 RE 183 (276)
Q Consensus 182 ~~ 183 (276)
+.
T Consensus 110 DH 111 (219)
T KOG0126|consen 110 DH 111 (219)
T ss_pred ee
Confidence 63
No 114
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=8.9e-10 Score=83.78 Aligned_cols=80 Identities=23% Similarity=0.272 Sum_probs=69.3
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
....+|||++|...+++..|...|-+||+|..+.++.|. .++||||+|+..++|..||..||+.++.| +.|+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G----rtir 83 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG----RTIR 83 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc----eeEE
Confidence 345569999999999999999999999999999998883 56799999999999999999999999999 5666
Q ss_pred eecccCCC
Q 023820 181 VREYDHRR 188 (276)
Q Consensus 181 ~~~~~~~r 188 (276)
|..+.+.+
T Consensus 84 VN~AkP~k 91 (298)
T KOG0111|consen 84 VNLAKPEK 91 (298)
T ss_pred EeecCCcc
Confidence 66554433
No 115
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.94 E-value=4.6e-09 Score=90.41 Aligned_cols=80 Identities=26% Similarity=0.485 Sum_probs=72.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC---CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
.+.|+|.+|...+...+|++||++||.|+..+++.+ +..+.|+||+|.+.++|.+||..||.+.|.|+.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 478999999999999999999999999999999654 45567999999999999999999999999999999999885
Q ss_pred CCC
Q 023820 83 GRG 85 (276)
Q Consensus 83 ~~~ 85 (276)
.+.
T Consensus 485 Ep~ 487 (940)
T KOG4661|consen 485 EPG 487 (940)
T ss_pred Ccc
Confidence 443
No 116
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.92 E-value=1.1e-08 Score=69.49 Aligned_cols=76 Identities=20% Similarity=0.292 Sum_probs=64.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccC----CceEEE
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD----GHRLRV 77 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~--G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~----g~~i~v 77 (276)
+||+|+|||...|.++|.+++... |...-+.++. +..+.|||||.|.+++.|......++|..|. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 799999999999999999998753 6666677754 4567899999999999999999999999886 567778
Q ss_pred EEccC
Q 023820 78 ELAHG 82 (276)
Q Consensus 78 ~~a~~ 82 (276)
.+|.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77764
No 117
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.88 E-value=5.3e-09 Score=89.41 Aligned_cols=76 Identities=32% Similarity=0.600 Sum_probs=65.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
-.+|||+|||+++++++|.++|..||+|+...|.. .+....||||+|.+.+.++.|++ .+-..++++.|.|+.-..
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEeccc
Confidence 35699999999999999999999999999887732 24444899999999999999999 668889999999987554
No 118
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.87 E-value=6.9e-09 Score=91.41 Aligned_cols=79 Identities=27% Similarity=0.454 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCC------CCCceEEEEecCHHHHHHHHHhcCCCccCCceEEE
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP------RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~------~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v 77 (276)
.-++.|||+||++.++++.|...|..||+|..|+|++.. ....++||.|-+..+|+.|++.|+|..+.+.++++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 346889999999999999999999999999999997742 45679999999999999999999999999999999
Q ss_pred EEccC
Q 023820 78 ELAHG 82 (276)
Q Consensus 78 ~~a~~ 82 (276)
.|++.
T Consensus 252 gWgk~ 256 (877)
T KOG0151|consen 252 GWGKA 256 (877)
T ss_pred ccccc
Confidence 99864
No 119
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.87 E-value=4.4e-09 Score=86.64 Aligned_cols=83 Identities=27% Similarity=0.542 Sum_probs=73.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC---CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
.+.+|||++||+++++++|++.|.+||.|..+.++.+ ...++|+||.|.+.+++.+++. ...+.|.|+.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 3569999999999999999999999999998888654 4788999999999999999998 88999999999999988
Q ss_pred CCCCCCC
Q 023820 82 GGRGRSS 88 (276)
Q Consensus 82 ~~~~~~~ 88 (276)
++.....
T Consensus 175 pk~~~~~ 181 (311)
T KOG4205|consen 175 PKEVMQS 181 (311)
T ss_pred chhhccc
Confidence 7665443
No 120
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.85 E-value=1.9e-08 Score=64.96 Aligned_cols=70 Identities=26% Similarity=0.404 Sum_probs=48.9
Q ss_pred CeEEEcCCCCCCCHHHH----HHHHhhcC-CeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 7 RTLYVGNLPGDIREREV----EDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l----~~~F~~~G-~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
..|+|.|||.+.+...| ++|+..|| .|..| . .+.|+|.|.+++.|..|.+.|+|..+.|..|.|.+..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 46899999999998774 56666775 56655 2 5789999999999999999999999999999999985
Q ss_pred CC
Q 023820 82 GG 83 (276)
Q Consensus 82 ~~ 83 (276)
..
T Consensus 76 ~~ 77 (90)
T PF11608_consen 76 KN 77 (90)
T ss_dssp -S
T ss_pred Cc
Confidence 43
No 121
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.81 E-value=2.8e-08 Score=82.12 Aligned_cols=74 Identities=24% Similarity=0.407 Sum_probs=65.6
Q ss_pred CCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeee
Q 023820 107 SEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 182 (276)
Q Consensus 107 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~ 182 (276)
..+|||+|||..+++++|.++|..||.+..+.+..+. ..++|||+|.+.++|..|+..+++..+.| ..+.+.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~----~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEG----RPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECC----ceeEee
Confidence 4569999999999999999999999999999998774 55799999999999999999999999999 555555
Q ss_pred cc
Q 023820 183 EY 184 (276)
Q Consensus 183 ~~ 184 (276)
..
T Consensus 191 ~~ 192 (306)
T COG0724 191 KA 192 (306)
T ss_pred cc
Confidence 43
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=6e-10 Score=99.91 Aligned_cols=136 Identities=21% Similarity=0.287 Sum_probs=111.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---cCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~---~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
..+++||.||++.+.+.+|...|..+|.+..+.+. ..++.+|+||++|..++++.+|+.. +...+.|+
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f-~d~~~~gK-------- 736 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF-RDSCFFGK-------- 736 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh-hhhhhhhh--------
Confidence 34688999999999999999999999988776663 3577889999999999999999994 44444331
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeec---CCCCeEEEEeCCHHHH
Q 023820 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---GSGTTGIVDYTNYDDM 158 (276)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~~~fv~f~~~~~a 158 (276)
..|+|.|+|+..|.++++.++..+|.+....+... .+.|.|+|.|.+..++
T Consensus 737 --------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~ 790 (881)
T KOG0128|consen 737 --------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADA 790 (881)
T ss_pred --------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchh
Confidence 12678899999999999999999999988766544 4668999999999999
Q ss_pred HHHHHhcCCceecccce
Q 023820 159 KHAIKKLDDSEFRNAFS 175 (276)
Q Consensus 159 ~~a~~~l~~~~~~g~~~ 175 (276)
..++..++...+.-...
T Consensus 791 s~~~~s~d~~~~rE~~~ 807 (881)
T KOG0128|consen 791 SRKVASVDVAGKRENNG 807 (881)
T ss_pred hhhcccchhhhhhhcCc
Confidence 99998887776655433
No 123
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.78 E-value=1e-08 Score=81.38 Aligned_cols=79 Identities=25% Similarity=0.411 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
-+...|||+|+...+|.++|...|+.||.|..+.|+. .++++|||||+|.+.+.++.||. |||..|.|+.|.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 4568999999999999999999999999998777754 35689999999999999999999 9999999999999987
Q ss_pred cCC
Q 023820 81 HGG 83 (276)
Q Consensus 81 ~~~ 83 (276)
.-.
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 643
No 124
>smart00361 RRM_1 RNA recognition motif.
Probab=98.78 E-value=4.9e-08 Score=63.03 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=45.0
Q ss_pred HHHHHHHhh----hcCCeeEEE-Eeec------CCCCeEEEEeCCHHHHHHHHHhcCCceecccc
Q 023820 121 WQDLKDHMR----RAGDVCFSQ-VFRD------GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 174 (276)
Q Consensus 121 ~~~l~~~f~----~~g~i~~~~-~~~~------~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 174 (276)
+++|.++|. +||.|..+. +..+ ...|+|||+|.+.++|..|+..|||..+.|+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~ 66 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRT 66 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 467778887 999999985 4443 24679999999999999999999999999943
No 125
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.75 E-value=2.4e-08 Score=85.96 Aligned_cols=76 Identities=22% Similarity=0.340 Sum_probs=67.8
Q ss_pred CcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeec
Q 023820 108 EYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 183 (276)
Q Consensus 108 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~ 183 (276)
..|||||+|+++++++|.++|...|.|..+++..|.. +||||++|.+.++|..|++.|+|.++.| +.+++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g----r~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG----RKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC----ceEEeec
Confidence 5699999999999999999999999999999998864 4699999999999999999999999999 6666665
Q ss_pred ccCC
Q 023820 184 YDHR 187 (276)
Q Consensus 184 ~~~~ 187 (276)
....
T Consensus 95 ~~~~ 98 (435)
T KOG0108|consen 95 ASNR 98 (435)
T ss_pred cccc
Confidence 5443
No 126
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.74 E-value=3.5e-08 Score=81.04 Aligned_cols=167 Identities=22% Similarity=0.255 Sum_probs=123.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---cCCCCCceEEEEecCHHHHHHHHHhcCC-CccCCceEEEEEc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDG-YDFDGHRLRVELA 80 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~---~~~~~~g~afV~f~~~e~a~~A~~~lng-~~~~g~~i~v~~a 80 (276)
..+++|++++...+.+.++..+|..+|.+....+. .....+++++|.|...+.+..|+. +.+ ..+.+..+...+.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccccccccCccc
Confidence 46789999999999999999999999987776652 245788999999999999999999 555 4566666555444
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCc-EEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCC----CeEEEEeCCH
Q 023820 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEY-LLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNY 155 (276)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~ 155 (276)
........... .......... .+|++++..+++++|...|..+|.|..+.++..... ++|+|.|...
T Consensus 166 ~~~~~~~~n~~--------~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~ 237 (285)
T KOG4210|consen 166 TRRGLRPKNKL--------SRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAG 237 (285)
T ss_pred ccccccccchh--------cccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhc
Confidence 43331111000 0111222334 459999999999999999999999999999888654 4899999999
Q ss_pred HHHHHHHHhcCCceecccceeeEEeeeccc
Q 023820 156 DDMKHAIKKLDDSEFRNAFSRAYVRVREYD 185 (276)
Q Consensus 156 ~~a~~a~~~l~~~~~~g~~~~~~i~~~~~~ 185 (276)
..+..++.. ....+.+ ..+.++...
T Consensus 238 ~~~~~~~~~-~~~~~~~----~~~~~~~~~ 262 (285)
T KOG4210|consen 238 NSKKLALND-QTRSIGG----RPLRLEEDE 262 (285)
T ss_pred hhHHHHhhc-ccCcccC----cccccccCC
Confidence 999999886 6667766 444444433
No 127
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.72 E-value=3e-07 Score=75.77 Aligned_cols=156 Identities=17% Similarity=0.198 Sum_probs=107.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE---EEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAH---IDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~---v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
+.+..|-.++||+..++.+|..||.-.-.... +-+...+...|.|.|.|.++|.-..|++ -+...+.++.|.|..+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 45667788999999999999999985422211 2223345667899999999999999999 6788888999999877
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCc--EEEeCCCCCCCHHHHHHHhhhcC----C---eeEEEEeecCCCCeEEEE
Q 023820 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEY--LLVTGLPSSASWQDLKDHMRRAG----D---VCFSQVFRDGSGTTGIVD 151 (276)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~v~nl~~~~~~~~l~~~f~~~g----~---i~~~~~~~~~~~~~~fv~ 151 (276)
.....-.-.... ...........+. |-+.+||+++++.++.++|.+-. . |..|.-..++..|-|||.
T Consensus 137 ~ge~f~~iagg~----s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvl 212 (508)
T KOG1365|consen 137 TGEEFLKIAGGT----SNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVL 212 (508)
T ss_pred CchhheEecCCc----cccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEE
Confidence 643322111100 0001111112223 66779999999999999996322 2 333333344566789999
Q ss_pred eCCHHHHHHHHHh
Q 023820 152 YTNYDDMKHAIKK 164 (276)
Q Consensus 152 f~~~~~a~~a~~~ 164 (276)
|..+++|+.|+.+
T Consensus 213 fa~ee~aq~aL~k 225 (508)
T KOG1365|consen 213 FACEEDAQFALRK 225 (508)
T ss_pred ecCHHHHHHHHHH
Confidence 9999999999985
No 128
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.68 E-value=4.8e-09 Score=86.32 Aligned_cols=63 Identities=17% Similarity=0.178 Sum_probs=53.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccC
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~ 71 (276)
+||+|++|+..+-..++.++|+.+|+|....+. .+....+|.|+|....+...|+. ++|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a-sk~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTA-SKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhh-ccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 689999999999999999999999999876653 23345688999999999999999 7777665
No 129
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.62 E-value=9e-09 Score=85.59 Aligned_cols=144 Identities=24% Similarity=0.400 Sum_probs=113.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCc-cCCceEEEEEccCC
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD-FDGHRLRVELAHGG 83 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~--G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~-~~g~~i~v~~a~~~ 83 (276)
+.+|++||.+.++..+|..+|... |--..+-+ ..||+||.+.+..-|.+|++.++|.. +.|+.+.|++...+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 468999999999999999999754 21122222 26899999999999999999999864 88999999887543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEe-ecCCCCeEEEEeCCHHHHHHHH
Q 023820 84 RGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVF-RDGSGTTGIVDYTNYDDMKHAI 162 (276)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-~~~~~~~~fv~f~~~~~a~~a~ 162 (276)
. ...+.+-+.|+|+...++.|..++.+||.+..|... .+......-|.|...+.+..|+
T Consensus 77 k--------------------qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai 136 (584)
T KOG2193|consen 77 K--------------------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAI 136 (584)
T ss_pred H--------------------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 2 223447889999999999999999999999887653 3333233446788899999999
Q ss_pred HhcCCceecccce
Q 023820 163 KKLDDSEFRNAFS 175 (276)
Q Consensus 163 ~~l~~~~~~g~~~ 175 (276)
.+++|-.+.....
T Consensus 137 ~kl~g~Q~en~~~ 149 (584)
T KOG2193|consen 137 HKLNGPQLENQHL 149 (584)
T ss_pred HhhcchHhhhhhh
Confidence 9999998887543
No 130
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.61 E-value=4.1e-08 Score=75.06 Aligned_cols=67 Identities=28% Similarity=0.436 Sum_probs=56.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCcc
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~ 70 (276)
.+...||||.||.+++||++|+.+|+.|--..-++|...+ ....||++|++.+.|..|+..|+|..|
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~-g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARG-GMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCC-CcceEeecHHHHHHHHHHHHHhhccee
Confidence 3556799999999999999999999999877777775332 245899999999999999999998655
No 131
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.52 E-value=4e-07 Score=80.42 Aligned_cols=172 Identities=13% Similarity=-0.004 Sum_probs=117.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--ec-CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~--~~-~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
..+.+-+.+.+.++...+++++|... .|..+.| .. .+...|.++|+|....++++|+. -|.+.+-++.+.|..+.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCC
Confidence 34566678999999999999999743 2444444 22 33447899999999999999998 67777778888886654
Q ss_pred CCCCCCCCCCCCC--------------------CCCCC-CCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeE-EEE
Q 023820 82 GGRGRSSSDRHSS--------------------HSSGR-GRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCF-SQV 139 (276)
Q Consensus 82 ~~~~~~~~~~~~~--------------------~~~~~-~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~-~~~ 139 (276)
............. ..+++ ...+-....+|||..||..++..++.++|.....|++ |.+
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 3222111110000 00000 0112234556999999999999999999998888877 555
Q ss_pred eec---CCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeee
Q 023820 140 FRD---GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 182 (276)
Q Consensus 140 ~~~---~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~ 182 (276)
... .-.+-|||.|..++++..|...-+..+++. +.|+|+
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~----r~irv~ 509 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGH----RIIRVD 509 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCc----eEEEee
Confidence 433 334589999999999988888666666554 555555
No 132
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.51 E-value=6.6e-07 Score=77.44 Aligned_cols=76 Identities=22% Similarity=0.348 Sum_probs=66.0
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
....+|+|.+|...+...+|+.+|.+||+|+-++++.+. .+.|+||+|.+.++|.++|..|+.+++.| ..|.
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG----rmIS 478 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHG----RMIS 478 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcc----eeee
Confidence 344569999999999999999999999999999998884 22499999999999999999999999999 5666
Q ss_pred eecc
Q 023820 181 VREY 184 (276)
Q Consensus 181 ~~~~ 184 (276)
|+..
T Consensus 479 VEka 482 (940)
T KOG4661|consen 479 VEKA 482 (940)
T ss_pred eeec
Confidence 6643
No 133
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.46 E-value=2.5e-06 Score=73.26 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=61.2
Q ss_pred cEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeec----CCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecc
Q 023820 109 YLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD----GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 184 (276)
Q Consensus 109 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~----~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~ 184 (276)
.|||.|||.+++..+|+++|..||+|....|... ...+||||+|++.++++.|+.+- -..+++ .++.|++.
T Consensus 290 ~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~----~kl~Veek 364 (419)
T KOG0116|consen 290 GIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGG----RKLNVEEK 364 (419)
T ss_pred ceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCC----eeEEEEec
Confidence 3999999999999999999999999998777553 33379999999999999999965 556666 67777766
Q ss_pred cCC
Q 023820 185 DHR 187 (276)
Q Consensus 185 ~~~ 187 (276)
...
T Consensus 365 ~~~ 367 (419)
T KOG0116|consen 365 RPG 367 (419)
T ss_pred ccc
Confidence 553
No 134
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.45 E-value=4.5e-07 Score=63.11 Aligned_cols=70 Identities=17% Similarity=0.347 Sum_probs=44.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCC-----ccCCceEEEEE
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY-----DFDGHRLRVEL 79 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~-----~~~g~~i~v~~ 79 (276)
+.|+|.+++..++.++|+++|+.||.|..|.+.. ....|||.|.+++.|+.|+..+... .+.+..+.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~---G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR---GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T---T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC---CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 5789999999999999999999999999999863 3448999999999999998876433 45555555544
No 135
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.45 E-value=2.4e-07 Score=72.34 Aligned_cols=75 Identities=19% Similarity=0.418 Sum_probs=66.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE---ecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~---~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.-.||++.|-.+++++.|-..|.+|-.....++ ..+++++||+||.|.+++++..|+..|||..++.++|++..+
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 467999999999999999999999976665555 457899999999999999999999999999999999988644
No 136
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.43 E-value=1.5e-07 Score=73.04 Aligned_cols=69 Identities=33% Similarity=0.529 Sum_probs=62.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEE
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v 77 (276)
...+.|.|.||+..+.+++|.+.|.++|.+....+ ..+++||+|...++|..|+..|+|..+.|+.|.+
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhh-----hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 45688999999999999999999999999955444 3679999999999999999999999999999999
No 137
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.36 E-value=1.2e-06 Score=78.53 Aligned_cols=76 Identities=17% Similarity=0.262 Sum_probs=65.2
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeeccc
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 185 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~~ 185 (276)
.+.+||||+|+..+++.+|..+|+.||+|..|.+... .++|||.+....+|.+|+.+|.+..+.+ ..|++.++-
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~--R~cAfI~M~~RqdA~kalqkl~n~kv~~----k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP--RGCAFIKMVRRQDAEKALQKLSNVKVAD----KTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC--CceeEEEEeehhHHHHHHHHHhcccccc----eeeEEeeec
Confidence 3456999999999999999999999999999888654 5699999999999999999999988888 555555554
Q ss_pred CC
Q 023820 186 HR 187 (276)
Q Consensus 186 ~~ 187 (276)
..
T Consensus 494 g~ 495 (894)
T KOG0132|consen 494 GK 495 (894)
T ss_pred cC
Confidence 43
No 138
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.36 E-value=2.3e-06 Score=67.23 Aligned_cols=62 Identities=24% Similarity=0.372 Sum_probs=52.3
Q ss_pred HHHHHHHh-hcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 21 REVEDLFY-KYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 21 ~~l~~~F~-~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
++|...|+ +||+|..+++-. ..+-.|.+||.|...|+|++|+..|||.+|.|++|..++...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 45555666 899999998732 346678999999999999999999999999999999988653
No 139
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.34 E-value=1.3e-06 Score=68.26 Aligned_cols=153 Identities=13% Similarity=0.147 Sum_probs=106.0
Q ss_pred EEcCCCCCCCHHH-H--HHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCCC
Q 023820 10 YVGNLPGDIRERE-V--EDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (276)
Q Consensus 10 ~v~nL~~~~t~~~-l--~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~~ 84 (276)
++.|+-+.+..+- | ...|+.+-.+...++.. .+.-.+++|+.|.....-.++...-+++.+.-.+|++.-.....
T Consensus 100 ~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswe 179 (290)
T KOG0226|consen 100 FQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWE 179 (290)
T ss_pred cccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccccC
Confidence 4455544544444 2 45565554444444433 34556899999988877777777667777766664443222211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHH
Q 023820 85 GRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKH 160 (276)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~ 160 (276)
.. ....++...-.||-+.|..+++.+.|-..|.+|-......+..+. ..||+||.|.++.++..
T Consensus 180 dP------------sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~r 247 (290)
T KOG0226|consen 180 DP------------SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVR 247 (290)
T ss_pred Cc------------ccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHH
Confidence 11 111123333349999999999999999999999988888888774 55799999999999999
Q ss_pred HHHhcCCceecccc
Q 023820 161 AIKKLDDSEFRNAF 174 (276)
Q Consensus 161 a~~~l~~~~~~g~~ 174 (276)
|+..|+|..++.+.
T Consensus 248 Amrem~gkyVgsrp 261 (290)
T KOG0226|consen 248 AMREMNGKYVGSRP 261 (290)
T ss_pred HHHhhcccccccch
Confidence 99999999999843
No 140
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.34 E-value=2.2e-06 Score=66.09 Aligned_cols=66 Identities=15% Similarity=0.220 Sum_probs=60.2
Q ss_pred CcEEEeCCCCCCCHHHHHH----HhhhcCCeeEEEEeec-CCCCeEEEEeCCHHHHHHHHHhcCCceeccc
Q 023820 108 EYLLVTGLPSSASWQDLKD----HMRRAGDVCFSQVFRD-GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 108 ~~l~v~nl~~~~~~~~l~~----~f~~~g~i~~~~~~~~-~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 173 (276)
.+|||.||...+..++|+. +|++||.|..|..... +-+|-|||.|.+.+.|..|+..|+|..+-|+
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK 80 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGK 80 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCc
Confidence 3899999999999999888 9999999999888754 5678999999999999999999999999984
No 141
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.30 E-value=3e-06 Score=69.19 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=61.4
Q ss_pred CcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhc-CCceecccceeeEEeeecccC
Q 023820 108 EYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL-DDSEFRNAFSRAYVRVREYDH 186 (276)
Q Consensus 108 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l-~~~~~~g~~~~~~i~~~~~~~ 186 (276)
.+|||++|...+++.+|.++|.+||+|..+.+..... +|||+|.+.+.|+.|..+. +...|.| .++.+.+.+.
T Consensus 229 ~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~--CAFv~ftTR~aAE~Aae~~~n~lvI~G----~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG--CAFVTFTTREAAEKAAEKSFNKLVING----FRLKIKWGRP 302 (377)
T ss_pred eEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc--cceeeehhhHHHHHHHHhhcceeeecc----eEEEEEeCCC
Confidence 3499999999999999999999999999999987654 9999999999999888874 5556666 5666666655
No 142
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.24 E-value=5.7e-06 Score=65.78 Aligned_cols=69 Identities=28% Similarity=0.329 Sum_probs=62.9
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCC---CeEEEEeCCHHHHHHHHHhcCCceecccc
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAF 174 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 174 (276)
....|+|.|||..+..++|+++|..||.+..+.+..++.+ +.|-|.|...++|..|++.+++..++|..
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~ 153 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRP 153 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCce
Confidence 3345999999999999999999999999999999888766 79999999999999999999999999954
No 143
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.21 E-value=4.5e-06 Score=50.29 Aligned_cols=53 Identities=26% Similarity=0.533 Sum_probs=43.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHH
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAI 62 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~ 62 (276)
++.|-|.++++...+. |...|..||+|..+.+. ......||.|.+..+|+.||
T Consensus 1 ~~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 3678899999887754 45588899999998886 34669999999999999985
No 144
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.20 E-value=7.7e-06 Score=62.21 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=62.0
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhc-CCeeEEEEeec----CCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEE
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRA-GDVCFSQVFRD----GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 179 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~-g~i~~~~~~~~----~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i 179 (276)
..+.++|..+|..+.+.++...|.++ |.+..+.+..+ ...+||||+|++.+.|.-|.+.||++.+.++...+..
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 44559999999999999999999998 56666776555 3557999999999999999999999999997665543
No 145
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.20 E-value=1.8e-06 Score=70.96 Aligned_cols=81 Identities=32% Similarity=0.500 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEE---ecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~--------v~~---~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~ 73 (276)
.+.+|||-+||..+++++|.++|.+||.|.. |+| +.++.+++-|.|.|.+...|+.|+.-+++..|.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4578999999999999999999999998732 333 23678899999999999999999999999999999
Q ss_pred eEEEEEccCCCC
Q 023820 74 RLRVELAHGGRG 85 (276)
Q Consensus 74 ~i~v~~a~~~~~ 85 (276)
.|+|.+|.....
T Consensus 145 ~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 145 TIKVSLAERRTG 156 (351)
T ss_pred CchhhhhhhccC
Confidence 999998886654
No 146
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.18 E-value=2.1e-06 Score=74.26 Aligned_cols=71 Identities=20% Similarity=0.187 Sum_probs=61.0
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccce
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 175 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 175 (276)
.....+|+|-|||..++.++|..+|+.||+|..+..-. ...+.+||+|.+..+|+.|+++|++.++.|+..
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~ 142 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-NKRGIVFVEFYDVRDAERALKALNRREIAGKRI 142 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhh
Confidence 44556699999999999999999999999999855433 345689999999999999999999999998533
No 147
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.17 E-value=1.1e-06 Score=67.22 Aligned_cols=70 Identities=17% Similarity=0.134 Sum_probs=61.8
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCC--CeEEEEeCCHHHHHHHHHhcCCceeccc
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG--TTGIVDYTNYDDMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 173 (276)
+....+|+|+|+...++++-|.++|-+.|+|..|.|..+... .||||.|++.-...-|++.+||..+.+.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~ 77 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEED 77 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccc
Confidence 344566999999999999999999999999999999877533 4999999999999999999999888763
No 148
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.17 E-value=5e-06 Score=73.92 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=61.8
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC-------CCCeEEEEeCCHHHHHHHHHhcCCceecc
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-------SGTTGIVDYTNYDDMKHAIKKLDDSEFRN 172 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~-------~~~~~fv~f~~~~~a~~a~~~l~~~~~~g 172 (276)
.+.+++|||+||++.++++.|...|+.||+|..+.++... ...+|||.|.+..+|+.|++.|+|..+.+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 3455569999999999999999999999999999998663 34599999999999999999999999887
No 149
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.10 E-value=3.1e-05 Score=63.40 Aligned_cols=79 Identities=24% Similarity=0.442 Sum_probs=65.8
Q ss_pred CCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeE--------EEEeecCCC---CeEEEEeCCHHHHHHHHHhcCCceec
Q 023820 103 VSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFR 171 (276)
Q Consensus 103 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~~~~~~ 171 (276)
.+..++.|||.|||.++|-+++.++|.++|-|.. |.+..+..+ |=|.+.|...++..-|+..|++..+.
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 3455566999999999999999999999997753 566666543 46999999999999999999999999
Q ss_pred ccceeeEEeeeccc
Q 023820 172 NAFSRAYVRVREYD 185 (276)
Q Consensus 172 g~~~~~~i~~~~~~ 185 (276)
| ..++|+.+.
T Consensus 210 g----~~~rVerAk 219 (382)
T KOG1548|consen 210 G----KKLRVERAK 219 (382)
T ss_pred C----cEEEEehhh
Confidence 8 777777554
No 150
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.06 E-value=1.2e-05 Score=65.42 Aligned_cols=75 Identities=23% Similarity=0.445 Sum_probs=60.8
Q ss_pred CeEEEcCCCCCCCHHH----H--HHHHhhcCCeeEEEEec-CC---CCCce--EEEEecCHHHHHHHHHhcCCCccCCce
Q 023820 7 RTLYVGNLPGDIRERE----V--EDLFYKYGPIAHIDLKI-PP---RPPGY--AFVEFEEARDAEDAIRGRDGYDFDGHR 74 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~----l--~~~F~~~G~v~~v~~~~-~~---~~~g~--afV~f~~~e~a~~A~~~lng~~~~g~~ 74 (276)
+-|||-+||+.+..++ | .++|.+||.|..|.+.. +. ...+. .||+|...|+|..|+...+|..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 5689999999987776 2 37999999999999843 21 11122 399999999999999999999999999
Q ss_pred EEEEEcc
Q 023820 75 LRVELAH 81 (276)
Q Consensus 75 i~v~~a~ 81 (276)
|+..+..
T Consensus 195 lkatYGT 201 (480)
T COG5175 195 LKATYGT 201 (480)
T ss_pred EeeecCc
Confidence 9998754
No 151
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.04 E-value=6.7e-06 Score=69.02 Aligned_cols=67 Identities=28% Similarity=0.296 Sum_probs=57.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCC----------------CCCceEEEEecCHHHHHHHHHhcCCC
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP----------------RPPGYAFVEFEEARDAEDAIRGRDGY 68 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~----------------~~~g~afV~f~~~e~a~~A~~~lng~ 68 (276)
++++|.+.|||.+-.-+.|.+||..||.|..|.|...+ ..+-+|+|+|.+.+.|.+|.+.||..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 67999999999999999999999999999999995431 13568999999999999999987654
Q ss_pred ccC
Q 023820 69 DFD 71 (276)
Q Consensus 69 ~~~ 71 (276)
.-+
T Consensus 310 ~~w 312 (484)
T KOG1855|consen 310 QNW 312 (484)
T ss_pred hhh
Confidence 433
No 152
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=97.99 E-value=7.7e-06 Score=71.08 Aligned_cols=7 Identities=14% Similarity=0.259 Sum_probs=3.0
Q ss_pred HHHHHhc
Q 023820 159 KHAIKKL 165 (276)
Q Consensus 159 ~~a~~~l 165 (276)
.+|++++
T Consensus 557 ~~aveAf 563 (757)
T KOG4368|consen 557 LAAVEAF 563 (757)
T ss_pred HHHHHHh
Confidence 3444443
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.98 E-value=1.8e-05 Score=55.06 Aligned_cols=57 Identities=25% Similarity=0.494 Sum_probs=39.0
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCc
Q 023820 110 LLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS 168 (276)
Q Consensus 110 l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~ 168 (276)
|.+.+++..++.++|++.|..||+|.+|.+..... .|||.|.+++.|+.|+.++...
T Consensus 4 l~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 4 LKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred EEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 77888999999999999999999999998877644 8999999999999999987555
No 154
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.96 E-value=4.7e-05 Score=52.18 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=53.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-e---------cCCCCCceEEEEecCHHHHHHHHHhcCCCccCCce
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL-K---------IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~-~---------~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~ 74 (276)
..+.|.|=++|+. ....|.+.|++||+|.+..- . ..........|.|.++.+|++||. .||..|.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 4567888899988 66788899999999987751 0 011345689999999999999999 8999999865
Q ss_pred E-EEEEc
Q 023820 75 L-RVELA 80 (276)
Q Consensus 75 i-~v~~a 80 (276)
+ -|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 5 46665
No 155
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.89 E-value=7.6e-06 Score=64.20 Aligned_cols=71 Identities=17% Similarity=0.308 Sum_probs=59.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCC-----------CCC----ceEEEEecCHHHHHHHHHhcCCCc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP-----------RPP----GYAFVEFEEARDAEDAIRGRDGYD 69 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~-----------~~~----g~afV~f~~~e~a~~A~~~lng~~ 69 (276)
.+-.||+.||||.+...-|+++|+.||.|-.|.|.... .+. .-+.|+|.+...|..+...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 34689999999999999999999999999999994321 111 236799999999999999999999
Q ss_pred cCCceE
Q 023820 70 FDGHRL 75 (276)
Q Consensus 70 ~~g~~i 75 (276)
|+|+.-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 998753
No 156
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.89 E-value=9.5e-06 Score=70.79 Aligned_cols=76 Identities=12% Similarity=0.215 Sum_probs=65.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccC---CceEEEEE
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFY-KYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD---GHRLRVEL 79 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~-~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~---g~~i~v~~ 79 (276)
.+++.|+|.||-.-+|..+|+.|+. .+|.|..++|. +-+..|||.|.+.++|.+...+|||..|. ++.|.+.|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD---kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD---KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHH---HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 5789999999999999999999999 77888888663 23668999999999999999999999874 67888888
Q ss_pred ccC
Q 023820 80 AHG 82 (276)
Q Consensus 80 a~~ 82 (276)
...
T Consensus 519 ~~~ 521 (718)
T KOG2416|consen 519 VRA 521 (718)
T ss_pred cch
Confidence 753
No 157
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.86 E-value=0.00016 Score=49.16 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=55.4
Q ss_pred CcEEEeCCCCCCCHHHHHHHhhhc--CCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccce
Q 023820 108 EYLLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 175 (276)
Q Consensus 108 ~~l~v~nl~~~~~~~~l~~~f~~~--g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 175 (276)
++|+|.|+|...+.++|.+++... |....+.++.|- +.|||||.|.+++.|..-.+.++|..+..-.+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s 75 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNS 75 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCC
Confidence 359999999999999999988653 455556666653 45799999999999999999999999976443
No 158
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.85 E-value=9.1e-05 Score=66.05 Aligned_cols=76 Identities=22% Similarity=0.388 Sum_probs=64.6
Q ss_pred CCCC-eEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEE--ecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 4 RASR-TLYVGNLPGDIREREVEDLFYKYGPIAH-IDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 4 ~~~~-~l~v~nL~~~~t~~~l~~~F~~~G~v~~-v~~--~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
++.+ .|-+.|+|..++-+||.+||..|-.+-. |.+ ..++...|-|.|.|++.+.|..|..-|++..|..+.|.+.+
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3444 7889999999999999999999965532 333 44688899999999999999999999999999999998864
No 159
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.84 E-value=1.4e-05 Score=65.92 Aligned_cols=81 Identities=23% Similarity=0.417 Sum_probs=70.8
Q ss_pred CCCCCeEE-EcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEE
Q 023820 3 SRASRTLY-VGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (276)
Q Consensus 3 ~~~~~~l~-v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~ 78 (276)
..++.++| |+||+.++++++|+..|..+|.|..+.+.. ++..+++|||.|.+...+..|+.. +...+.+.++.+.
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 35566777 999999999999999999999999999954 567889999999999999999996 8888999999998
Q ss_pred EccCCC
Q 023820 79 LAHGGR 84 (276)
Q Consensus 79 ~a~~~~ 84 (276)
......
T Consensus 260 ~~~~~~ 265 (285)
T KOG4210|consen 260 EDEPRP 265 (285)
T ss_pred cCCCCc
Confidence 876544
No 160
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=7.5e-05 Score=65.00 Aligned_cols=76 Identities=28% Similarity=0.433 Sum_probs=61.3
Q ss_pred CCeEEEcCCCCCCC------HHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccC-CceEE
Q 023820 6 SRTLYVGNLPGDIR------EREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLR 76 (276)
Q Consensus 6 ~~~l~v~nL~~~~t------~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~-g~~i~ 76 (276)
...|+|.|+|---. ..-|.++|+++|+|..+.++. .+..+||.|++|++..+|+.|++.|||..|+ .....
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 46789999886422 223668999999999999965 4678999999999999999999999999876 56777
Q ss_pred EEEcc
Q 023820 77 VELAH 81 (276)
Q Consensus 77 v~~a~ 81 (276)
|...+
T Consensus 138 v~~f~ 142 (698)
T KOG2314|consen 138 VRLFK 142 (698)
T ss_pred eehhh
Confidence 76544
No 161
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.75 E-value=2.5e-05 Score=63.99 Aligned_cols=74 Identities=16% Similarity=0.219 Sum_probs=61.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEE---ecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGP--IAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~--v~~v~~---~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
.-++||+||.|.+|+++|.+.+...|. +.++++ ..+|+++|||+|......++++.++.|-.++|.|+.-.|..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 357899999999999999999988773 344444 23689999999999999999999999999999998666643
No 162
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.69 E-value=0.00026 Score=51.51 Aligned_cols=73 Identities=21% Similarity=0.361 Sum_probs=52.5
Q ss_pred CCCCeEEEcCCCC------CCCH---HHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCce
Q 023820 4 RASRTLYVGNLPG------DIRE---REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (276)
Q Consensus 4 ~~~~~l~v~nL~~------~~t~---~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~ 74 (276)
.|.-||.|.=+.+ ...+ .+|.+.|..||+|.-+++. .+.-+|+|.+-++|.+|+. |+|..+.|+.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv-----~~~mwVTF~dg~sALaals-~dg~~v~g~~ 98 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV-----GDTMWVTFRDGQSALAALS-LDGIQVNGRT 98 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE-----TTCEEEEESSCHHHHHHHH-GCCSEETTEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe-----CCeEEEEECccHHHHHHHc-cCCcEECCEE
Confidence 3556666654441 1222 3677889999999988887 3567999999999999999 9999999999
Q ss_pred EEEEEccC
Q 023820 75 LRVELAHG 82 (276)
Q Consensus 75 i~v~~a~~ 82 (276)
|+|....+
T Consensus 99 l~i~LKtp 106 (146)
T PF08952_consen 99 LKIRLKTP 106 (146)
T ss_dssp EEEEE---
T ss_pred EEEEeCCc
Confidence 99987654
No 163
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00019 Score=61.98 Aligned_cols=61 Identities=23% Similarity=0.412 Sum_probs=55.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEecC---CCCCceEEEEecCHHHHHHHHHh
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFY-KYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRG 64 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~-~~G~v~~v~~~~~---~~~~g~afV~f~~~e~a~~A~~~ 64 (276)
.|.+|||||+||.-++.++|..+|+ -||.|..+-|..+ +.++|-|=|.|.+..+-.+||..
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 5789999999999999999999999 8999999999766 35789999999999999999983
No 164
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.66 E-value=9e-05 Score=59.12 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=61.1
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccce
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 175 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 175 (276)
....++|+|+...++.+++..+|..||.+..+.+..+.. ++|+||+|.+.+.++.++. |++..+.|...
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i 172 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAI 172 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccc
Confidence 344599999999999999999999999999888887754 4599999999999999999 99999999543
No 165
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.62 E-value=0.00019 Score=56.53 Aligned_cols=101 Identities=28% Similarity=0.275 Sum_probs=81.5
Q ss_pred HHHHHHHhcCCCccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeE
Q 023820 57 DAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCF 136 (276)
Q Consensus 57 ~a~~A~~~lng~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~ 136 (276)
-|..|...|++....|+.+.|.|+.. ..|+|.||..-++.+.+.+.|..||+|..
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-------------------------a~l~V~nl~~~~sndll~~~f~~fg~~e~ 60 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-------------------------AELYVVNLMQGASNDLLEQAFRRFGPIER 60 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-------------------------ceEEEEecchhhhhHHHHHhhhhcCccch
Confidence 45667777899999999999999742 45999999999999999999999999998
Q ss_pred EEEeecC---CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeee
Q 023820 137 SQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 182 (276)
Q Consensus 137 ~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~ 182 (276)
..+..|. ..+-++|.|...-.|.+|...+...-+.+.......-|+
T Consensus 61 av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 61 AVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred heeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 7666663 345799999999999999999876666665444444444
No 166
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.61 E-value=0.00033 Score=45.50 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=41.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcC
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~ln 66 (276)
...+|+ +|..+...||.++|+.||.|.--.|. -.-|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~-----dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN-----DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEEC-----TTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc-----CCcEEEEeecHHHHHHHHHHhc
Confidence 455665 99999999999999999998755554 4489999999999999998775
No 167
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.55 E-value=0.00026 Score=56.83 Aligned_cols=61 Identities=26% Similarity=0.349 Sum_probs=50.5
Q ss_pred HHHHHHHHhhcCCeeEEEEecCC----CCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 20 EREVEDLFYKYGPIAHIDLKIPP----RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 20 ~~~l~~~F~~~G~v~~v~~~~~~----~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
++++.+.+++||.|..|.|.... +..--.||+|+..++|.+|+--|||..|+|+.+...|-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 45688899999999998884421 22346799999999999999999999999999987664
No 168
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.51 E-value=0.00014 Score=66.63 Aligned_cols=81 Identities=27% Similarity=0.429 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCC--ceEEEEEcc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELAH 81 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g--~~i~v~~a~ 81 (276)
-+++.+++++|.+.+....|...|..||.|..|.+- +...||||.|++...|+.|++.|-|..|+| +.|.|.++.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~---hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR---HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecc---cCCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 467899999999999999999999999999998885 345699999999999999999999999974 789999988
Q ss_pred CCCCCC
Q 023820 82 GGRGRS 87 (276)
Q Consensus 82 ~~~~~~ 87 (276)
.....+
T Consensus 530 ~~~~~P 535 (975)
T KOG0112|consen 530 PPGATP 535 (975)
T ss_pred CCCCCh
Confidence 655443
No 169
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.47 E-value=0.00037 Score=45.38 Aligned_cols=66 Identities=21% Similarity=0.305 Sum_probs=43.7
Q ss_pred cEEEeCCCCCCCHHH----HHHHhhhcC-CeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeec
Q 023820 109 YLLVTGLPSSASWQD----LKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 183 (276)
Q Consensus 109 ~l~v~nl~~~~~~~~----l~~~f~~~g-~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~ 183 (276)
.|+|.|||.+.+... |++++..+| .|..+. ++.|.|.|.+.+.|..|.+.|+|..+.| ..|.+..
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdVfG----~kI~v~~ 73 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDVFG----NKISVSF 73 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSS----S--EEES
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhccccccc----ceEEEEE
Confidence 489999999988755 555666666 455542 4689999999999999999999999999 5565554
Q ss_pred c
Q 023820 184 Y 184 (276)
Q Consensus 184 ~ 184 (276)
.
T Consensus 74 ~ 74 (90)
T PF11608_consen 74 S 74 (90)
T ss_dssp S
T ss_pred c
Confidence 4
No 170
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.47 E-value=0.00036 Score=41.96 Aligned_cols=51 Identities=18% Similarity=0.318 Sum_probs=40.2
Q ss_pred cEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHH
Q 023820 109 YLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAI 162 (276)
Q Consensus 109 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~ 162 (276)
.|.|.+.++...+. +...|..||+|..+.+... ..+.+|.|.+..+|++|+
T Consensus 3 wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~--~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES--TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC--CcEEEEEECCHHHHHhhC
Confidence 47788888666644 5558889999999888732 348999999999999985
No 171
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.46 E-value=0.0012 Score=47.53 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=58.0
Q ss_pred CCCCCeEEEcCCCCCCCH----HHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEE
Q 023820 3 SRASRTLYVGNLPGDIRE----REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~----~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~ 78 (276)
+-|-.||.|.-|..++.. ..|...++.||+|..|.+. .+..|.|.|.+..+|..|+.+++. ...|..+.+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 345678888877776543 3366677889999999875 466899999999999999998865 6678888888
Q ss_pred Ecc
Q 023820 79 LAH 81 (276)
Q Consensus 79 ~a~ 81 (276)
|..
T Consensus 158 Wqq 160 (166)
T PF15023_consen 158 WQQ 160 (166)
T ss_pred ccc
Confidence 754
No 172
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.43 E-value=0.00021 Score=56.43 Aligned_cols=57 Identities=14% Similarity=0.183 Sum_probs=45.2
Q ss_pred HHHHHHhh-hcCCeeEEEEeec---CCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeE
Q 023820 122 QDLKDHMR-RAGDVCFSQVFRD---GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 178 (276)
Q Consensus 122 ~~l~~~f~-~~g~i~~~~~~~~---~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 178 (276)
++|...|. +||+|+.+.+-.+ .-.|.+||.|...++|+.|+..|++.++.|+...+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae 143 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAE 143 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceee
Confidence 44555555 8999998866544 344689999999999999999999999999766553
No 173
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.43 E-value=1.3e-05 Score=72.73 Aligned_cols=155 Identities=15% Similarity=0.106 Sum_probs=113.4
Q ss_pred eEEEcCCCCCCCHH-HHHHHHhhcCCeeEEEEecCC---CCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 8 TLYVGNLPGDIRER-EVEDLFYKYGPIAHIDLKIPP---RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 8 ~l~v~nL~~~~t~~-~l~~~F~~~G~v~~v~~~~~~---~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
...+.|+.+..... .+...|..+|.|..|.+..-+ +...++++++....+++.|.. ..+..+.++.+.|..+...
T Consensus 573 e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad~~ 651 (881)
T KOG0128|consen 573 EKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLADAE 651 (881)
T ss_pred hhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCCCch
Confidence 45567777776655 567889999999999986422 223388999999999999998 8888999998888776654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEe----ecCCCCeEEEEeCCHHHHH
Q 023820 84 RGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVF----RDGSGTTGIVDYTNYDDMK 159 (276)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~----~~~~~~~~fv~f~~~~~a~ 159 (276)
........ .. .......++||.||++.+.+.+|...|..+|.+..+.+. .+..+|+||++|..++++.
T Consensus 652 ~~~~~~kv----s~----n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~ 723 (881)
T KOG0128|consen 652 EKEENFKV----SP----NEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAG 723 (881)
T ss_pred hhhhccCc----Cc----hHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchh
Confidence 42111000 00 000122348999999999999999999999987765553 4456789999999999999
Q ss_pred HHHHhcCCceec
Q 023820 160 HAIKKLDDSEFR 171 (276)
Q Consensus 160 ~a~~~l~~~~~~ 171 (276)
+|+...+...++
T Consensus 724 aaV~f~d~~~~g 735 (881)
T KOG0128|consen 724 AAVAFRDSCFFG 735 (881)
T ss_pred hhhhhhhhhhhh
Confidence 999976655554
No 174
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.21 E-value=0.0011 Score=54.42 Aligned_cols=72 Identities=17% Similarity=0.278 Sum_probs=56.8
Q ss_pred CCCcEEEeCCCCCCCHHH------HHHHhhhcCCeeEEEEeecCCC-----C--eEEEEeCCHHHHHHHHHhcCCceecc
Q 023820 106 RSEYLLVTGLPSSASWQD------LKDHMRRAGDVCFSQVFRDGSG-----T--TGIVDYTNYDDMKHAIKKLDDSEFRN 172 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~------l~~~f~~~g~i~~~~~~~~~~~-----~--~~fv~f~~~~~a~~a~~~l~~~~~~g 172 (276)
+.+.+||-+|++.+..++ -.++|++||.|..+.+.+..+. + -.||.|.+.++|..+|.+++|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 344499999998886665 3468999999999988766421 1 24999999999999999999999999
Q ss_pred cceee
Q 023820 173 AFSRA 177 (276)
Q Consensus 173 ~~~~~ 177 (276)
+..++
T Consensus 193 r~lka 197 (480)
T COG5175 193 RVLKA 197 (480)
T ss_pred ceEee
Confidence 65433
No 175
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.18 E-value=0.00024 Score=55.99 Aligned_cols=69 Identities=12% Similarity=0.205 Sum_probs=60.1
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCC---------C-------eEEEEeCCHHHHHHHHHhcCCce
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---------T-------TGIVDYTNYDDMKHAIKKLDDSE 169 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---------~-------~~fv~f~~~~~a~~a~~~l~~~~ 169 (276)
..+.||+.++|+.+...-|+++|.+||.|-.|.+...... + -|+|+|.+...|......||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4466999999999999999999999999999998665321 1 38999999999999999999999
Q ss_pred ecccc
Q 023820 170 FRNAF 174 (276)
Q Consensus 170 ~~g~~ 174 (276)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99953
No 176
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.93 E-value=0.0046 Score=42.44 Aligned_cols=63 Identities=19% Similarity=0.253 Sum_probs=45.8
Q ss_pred cEEEeCCCCCCCHHHHHHHhhhcCCeeEEE-E----------eecCCCCeEEEEeCCHHHHHHHHHhcCCceeccc
Q 023820 109 YLLVTGLPSSASWQDLKDHMRRAGDVCFSQ-V----------FRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 109 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~-~----------~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 173 (276)
.|.|-+.|+. ....|.+.|++||+|.... + .......+..|.|.++.+|.+|+. .||..+.|.
T Consensus 8 wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 8 WVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp EEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred EEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 4889999988 5667888999999998764 1 111234489999999999999999 788888874
No 177
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.85 E-value=0.00089 Score=51.30 Aligned_cols=80 Identities=19% Similarity=0.173 Sum_probs=52.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhh-cCCe---eEEEEec-----CCCCCceEEEEecCHHHHHHHHHhcCCCccCC--
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYK-YGPI---AHIDLKI-----PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG-- 72 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~-~G~v---~~v~~~~-----~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g-- 72 (276)
.....|.|++|||++|++++.+.+.. ++.. ..+.-.. ....-.-|||.|.+.+++......++|..|-+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 56679999999999999999987776 6665 3333111 11223579999999999999999999977643
Q ss_pred ---ceEEEEEccCC
Q 023820 73 ---HRLRVELAHGG 83 (276)
Q Consensus 73 ---~~i~v~~a~~~ 83 (276)
....|++|...
T Consensus 85 g~~~~~~VE~Apyq 98 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQ 98 (176)
T ss_dssp S-EEEEEEEE-SS-
T ss_pred CCCcceeEEEcchh
Confidence 35577887663
No 178
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.80 E-value=0.0063 Score=51.71 Aligned_cols=64 Identities=16% Similarity=0.299 Sum_probs=54.4
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeec---CC--------------CCeEEEEeCCHHHHHHHHHhcCC
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---GS--------------GTTGIVDYTNYDDMKHAIKKLDD 167 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~--------------~~~~fv~f~~~~~a~~a~~~l~~ 167 (276)
.+..+|.+.|||.+-.-+.|.++|+.+|.|..|.|.+. +. .-+|+|+|+..+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 45667999999999999999999999999999999766 11 12699999999999999998854
Q ss_pred c
Q 023820 168 S 168 (276)
Q Consensus 168 ~ 168 (276)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 179
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.79 E-value=0.0048 Score=49.77 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=48.4
Q ss_pred HHHHHHHhhhcCCeeEEEEeecCCC-----CeEEEEeCCHHHHHHHHHhcCCceecccceee
Q 023820 121 WQDLKDHMRRAGDVCFSQVFRDGSG-----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 177 (276)
Q Consensus 121 ~~~l~~~f~~~g~i~~~~~~~~~~~-----~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 177 (276)
+.++.+.+.+||.|..|.|...++. .-.||+|...++|.+|+-.|||.+++|+....
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 4578888999999999998877533 26899999999999999999999999975543
No 180
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.79 E-value=0.015 Score=40.68 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=47.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEEecCCCC-CceEEEEecCHHHHHHHHHhcCCCccC
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKY-GPIAHIDLKIPPRP-PGYAFVEFEEARDAEDAIRGRDGYDFD 71 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~-G~v~~v~~~~~~~~-~g~afV~f~~~e~a~~A~~~lng~~~~ 71 (276)
.+..+.+...|..++.++|..+.+.+ ..|..+.|..++.. +-.++|.|.+.++|.+.+..+||+.|.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 33444444445555666676666655 35677888877654 447788999999999999999999875
No 181
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.78 E-value=0.013 Score=36.15 Aligned_cols=54 Identities=17% Similarity=0.329 Sum_probs=42.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhc----CCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhc
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKY----GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~----G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~l 65 (276)
...|+|.|+. +++.++|+.+|..| ++ ..|.+.-+ .-|=|.|.+.+.|..||..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdD----tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDD----TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecC----CcEEEEECCHHHHHHHHHcC
Confidence 3579999984 68999999999998 53 34555422 26889999999999999865
No 182
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.72 E-value=0.0071 Score=46.54 Aligned_cols=62 Identities=29% Similarity=0.382 Sum_probs=47.3
Q ss_pred CHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcC--CCccCCceEEEEEccCC
Q 023820 19 REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRLRVELAHGG 83 (276)
Q Consensus 19 t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~ln--g~~~~g~~i~v~~a~~~ 83 (276)
..+.|+++|..|+.+..+.+. .+-+-..|.|.+.+.|+.|...|+ +..+.|..++|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L---~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL---KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE---TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEc---CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 457899999999999888876 455678999999999999999999 99999999999998543
No 183
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.68 E-value=0.0077 Score=52.97 Aligned_cols=69 Identities=22% Similarity=0.296 Sum_probs=55.4
Q ss_pred CCCcEEEeCCCCCCC------HHHHHHHhhhcCCeeEEEEeecCCC---CeEEEEeCCHHHHHHHHHhcCCceecccc
Q 023820 106 RSEYLLVTGLPSSAS------WQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAF 174 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~------~~~l~~~f~~~g~i~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 174 (276)
...+|+|.|.|---. ...|..+|+++|++....++.+..+ ||.|++|.+..+|+.|++.|||..+...+
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 344588888875432 2456778999999999999877544 59999999999999999999999998643
No 184
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.60 E-value=0.015 Score=37.63 Aligned_cols=66 Identities=27% Similarity=0.499 Sum_probs=40.2
Q ss_pred eEEEcCC--CCCCCHHHHHHHHhhcCC-----eeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 8 TLYVGNL--PGDIREREVEDLFYKYGP-----IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 8 ~l~v~nL--~~~~t~~~l~~~F~~~G~-----v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
++|| |+ -..++..+|..++...+. |-.|.+. ..|+||+-.. +.|..++..|++..+.|++|.|+.|
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4556 33 335889999999987754 4567765 5699999886 6888999999999999999999865
No 185
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.59 E-value=0.013 Score=38.28 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=41.8
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCC
Q 023820 110 LLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD 167 (276)
Q Consensus 110 l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~ 167 (276)
||--.+|..+...||.++|..||.|.-..+... .|||...+.+.|..++..+..
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I~VsWi~dT----SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQIYVSWINDT----SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCEEEEEECTT----EEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEeCchHhhhhhHHHHhccCCcEEEEEEcCC----cEEEEeecHHHHHHHHHHhcc
Confidence 554459999999999999999999987776433 899999999999999988753
No 186
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.57 E-value=0.0035 Score=54.92 Aligned_cols=71 Identities=15% Similarity=0.253 Sum_probs=56.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHh--hcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCC--CccCCceEEEEE
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFY--KYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG--YDFDGHRLRVEL 79 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~--~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng--~~~~g~~i~v~~ 79 (276)
.-|.|.|+-||..+..++|+.||. .|-++++|.+..+ .-=||+|++..||+.|++.|.. ++|.|++|...+
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N----~nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN----DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec----CceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 447788899999999999999997 4778899988521 2349999999999999988764 457777775543
No 187
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.57 E-value=0.0014 Score=57.78 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=53.1
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhc-CCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecc
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRA-GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRN 172 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~-g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g 172 (276)
.++.|+|.||--.+|..+|+++++.. |.|...+|.+-+. .|||.|.+.++|...+.+|||..+..
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKS--hCyV~yss~eEA~atr~AlhnV~WP~ 508 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKS--HCYVSYSSVEEAAATREALHNVQWPP 508 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhc--ceeEecccHHHHHHHHHHHhccccCC
Confidence 45559999999999999999999955 4565565544333 79999999999999999999988754
No 188
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.44 E-value=0.0049 Score=51.20 Aligned_cols=68 Identities=22% Similarity=0.310 Sum_probs=56.7
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeE--------EEEeec----CCCCeEEEEeCCHHHHHHHHHhcCCceeccc
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRD----GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~--------~~~~~~----~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 173 (276)
...+|||.+||..+++.+|.++|.++|.|.. +++.++ .+++-|.|.|+++..|+.|+.-++++.+.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 3445999999999999999999999997743 344444 3456899999999999999999999999983
No 189
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.41 E-value=0.023 Score=48.74 Aligned_cols=68 Identities=16% Similarity=0.317 Sum_probs=59.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEEecCCCCCc-eEEEEecCHHHHHHHHHhcCCCccCC
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKY-GPIAHIDLKIPPRPPG-YAFVEFEEARDAEDAIRGRDGYDFDG 72 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~-G~v~~v~~~~~~~~~g-~afV~f~~~e~a~~A~~~lng~~~~g 72 (276)
+++.|.|-.+|..++.-||..|...| -.|.+|.+.+++.+.. .++|.|.+.++|...+..+||..|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 37889999999999999999999865 5688899988876555 57899999999999999999998863
No 190
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=96.25 E-value=0.0089 Score=49.16 Aligned_cols=19 Identities=21% Similarity=0.155 Sum_probs=10.0
Q ss_pred CceEEEEecCHHHHHHHHH
Q 023820 45 PGYAFVEFEEARDAEDAIR 63 (276)
Q Consensus 45 ~g~afV~f~~~e~a~~A~~ 63 (276)
+.-.||-|.-.--|..++.
T Consensus 173 RT~v~vry~pe~iACaciy 191 (367)
T KOG0835|consen 173 RTDVFVRYSPESIACACIY 191 (367)
T ss_pred ccceeeecCHHHHHHHHHH
Confidence 3456677765444444443
No 191
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.23 E-value=0.0027 Score=56.76 Aligned_cols=119 Identities=16% Similarity=0.158 Sum_probs=80.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCCC
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~~ 84 (276)
+.-+|||+||...+..+-+..+...||-|..+.... |+|.+|.....+..|+..++-..++|+.+.+.......
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q~~ 112 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQTI 112 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------hcccchhhHHHHHHHHHHhcccCCCcchhhccchhhhh
Confidence 567899999999999999999999999998887652 99999999999999999999999999988876543222
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCc-EEEeCCCCCCCHHHHHHHhhh
Q 023820 85 GRSSSDRHSSHSSGRGRGVSRRSEY-LLVTGLPSSASWQDLKDHMRR 130 (276)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~-l~v~nl~~~~~~~~l~~~f~~ 130 (276)
..+.............- .+..... .+++++|...........+.-
T Consensus 113 ~n~~k~~~~~~~~~~~f-~p~~srr~e~i~~k~~~l~~~~~~~~~~i 158 (668)
T KOG2253|consen 113 ENADKEKSIANKESHKF-VPSSSRRQESIQNKPLSLDEQIHKKSLQI 158 (668)
T ss_pred cCccccccchhhhhccc-CCchhHHHHHhhccccchhHHHHHHHHhc
Confidence 22222211111111111 1111122 666677666665555555443
No 192
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.15 E-value=0.0039 Score=53.56 Aligned_cols=75 Identities=16% Similarity=0.245 Sum_probs=61.1
Q ss_pred CCeEEEcCCCCCC-CHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCCC
Q 023820 6 SRTLYVGNLPGDI-REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (276)
Q Consensus 6 ~~~l~v~nL~~~~-t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~~ 84 (276)
.+.|-+.-.|... +-++|-..|.+||+|..|.+-.. .-.|.|+|.+..+|-.|.. .++..|+++.|+|.|-+...
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 3455555555553 57789999999999999998643 4578999999999988988 89999999999999987643
No 193
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.00 E-value=0.0083 Score=47.57 Aligned_cols=75 Identities=28% Similarity=0.371 Sum_probs=59.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCC----ccCCceEEEEEc
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGY----DFDGHRLRVELA 80 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~----~~~g~~i~v~~a 80 (276)
..|+|.||+.-++-+.|.+.|+.||+|....+.. .++..+-++|+|...-.|.+|+..++-. ...+.+.-|...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 6799999999999999999999999997755533 4567788999999999999999887432 234566666554
Q ss_pred c
Q 023820 81 H 81 (276)
Q Consensus 81 ~ 81 (276)
.
T Consensus 112 e 112 (275)
T KOG0115|consen 112 E 112 (275)
T ss_pred h
Confidence 3
No 194
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.79 E-value=0.042 Score=44.75 Aligned_cols=70 Identities=17% Similarity=0.255 Sum_probs=52.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceE-EEEEcc
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRL-RVELAH 81 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i-~v~~a~ 81 (276)
.=|.|-++|+.- ...|..+|++||+|...... ..-.+-+|.|.+.-+|++||. .||+.|+|-.+ =|..+.
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~---~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP---SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecC---CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 345666777653 34677899999999876554 334588999999999999999 89999987654 354433
No 195
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.37 E-value=0.075 Score=38.90 Aligned_cols=51 Identities=18% Similarity=0.261 Sum_probs=42.1
Q ss_pred HHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceee
Q 023820 122 QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 177 (276)
Q Consensus 122 ~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 177 (276)
.+|.+.|..||++.-+++..+ .-+|.|.+-+.|.+|+. ++|.++.|+....
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaals-~dg~~v~g~~l~i 101 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAALS-LDGIQVNGRTLKI 101 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHHH-GCCSEETTEEEEE
T ss_pred HHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHHc-cCCcEECCEEEEE
Confidence 367788899999998888765 68999999999999998 9999999954433
No 196
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.36 E-value=0.0075 Score=49.80 Aligned_cols=75 Identities=31% Similarity=0.511 Sum_probs=57.8
Q ss_pred CeEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEecCC------CCCceEEEEecCHHHHHHHHHhcCCCccCCceEEE
Q 023820 7 RTLYVGNLPGDIREREVE---DLFYKYGPIAHIDLKIPP------RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~---~~F~~~G~v~~v~~~~~~------~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v 77 (276)
+-+||-+|+..+..+.+. +.|.+||.|..|.+..+. ....-+||+|...++|..||...+|..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 456777888776555544 589999999999885532 11224799999999999999999999999999777
Q ss_pred EEcc
Q 023820 78 ELAH 81 (276)
Q Consensus 78 ~~a~ 81 (276)
.+..
T Consensus 158 ~~gt 161 (327)
T KOG2068|consen 158 SLGT 161 (327)
T ss_pred hhCC
Confidence 6544
No 197
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=95.28 E-value=0.033 Score=45.97 Aligned_cols=11 Identities=0% Similarity=0.190 Sum_probs=5.4
Q ss_pred CCCHHHHHHHh
Q 023820 118 SASWQDLKDHM 128 (276)
Q Consensus 118 ~~~~~~l~~~f 128 (276)
++++++|.+++
T Consensus 212 d~~k~eid~ic 222 (367)
T KOG0835|consen 212 DTTKREIDEIC 222 (367)
T ss_pred CCcHHHHHHHH
Confidence 34555555543
No 198
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.25 E-value=0.029 Score=51.84 Aligned_cols=75 Identities=20% Similarity=0.178 Sum_probs=60.7
Q ss_pred EEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccC--CceEEEEEccCCCCCC
Q 023820 10 YVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD--GHRLRVELAHGGRGRS 87 (276)
Q Consensus 10 ~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~--g~~i~v~~a~~~~~~~ 87 (276)
++.|.+-+.+-.-|..+|..||.|.+.+... .-..|.|+|...+.|..|+..|+|+.+. |-+.+|-+|+..+.-.
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr---~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~e 378 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLR---DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYE 378 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheecc---cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccccc
Confidence 3344555677788999999999999998863 3558999999999999999999998864 8899999988655433
No 199
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.24 E-value=0.13 Score=45.54 Aligned_cols=84 Identities=12% Similarity=0.186 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcCCCccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCc-EEEeCCCCCCCHHHHHHHhhh--c
Q 023820 55 ARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEY-LLVTGLPSSASWQDLKDHMRR--A 131 (276)
Q Consensus 55 ~e~a~~A~~~lng~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~v~nl~~~~~~~~l~~~f~~--~ 131 (276)
++-..++|...-+..++.+-.+| .+....| |++..+|+.+-.++++.+|.- +
T Consensus 147 vdLI~Evlresp~VqvDekgekV-------------------------rp~~kRcIvilREIpettp~e~Vk~lf~~enc 201 (684)
T KOG2591|consen 147 VDLIVEVLRESPNVQVDEKGEKV-------------------------RPNHKRCIVILREIPETTPIEVVKALFKGENC 201 (684)
T ss_pred hHHHHHHHhcCCCceeccCcccc-------------------------ccCcceeEEEEeecCCCChHHHHHHHhccCCC
Confidence 33445556656666666655555 3344556 788899999999999999975 5
Q ss_pred CCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcC
Q 023820 132 GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 166 (276)
Q Consensus 132 g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 166 (276)
-+++.|.+..+. .=||.|++..||+.|.+.|.
T Consensus 202 Pk~iscefa~N~---nWyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 202 PKVISCEFAHND---NWYITFESDTDAQQAYKYLR 233 (684)
T ss_pred CCceeeeeeecC---ceEEEeecchhHHHHHHHHH
Confidence 677788876654 35899999999999988763
No 200
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=94.99 E-value=0.012 Score=48.43 Aligned_cols=10 Identities=0% Similarity=0.391 Sum_probs=4.5
Q ss_pred HHHHHHhhhc
Q 023820 122 QDLKDHMRRA 131 (276)
Q Consensus 122 ~~l~~~f~~~ 131 (276)
.+|.+.|.++
T Consensus 227 kqId~~ie~r 236 (453)
T KOG2888|consen 227 KQIDEKIEER 236 (453)
T ss_pred HHHHHHHHhc
Confidence 3444444443
No 201
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.94 E-value=0.28 Score=30.35 Aligned_cols=54 Identities=19% Similarity=0.208 Sum_probs=41.3
Q ss_pred CCcEEEeCCCCCCCHHHHHHHhhhc----CCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhc
Q 023820 107 SEYLLVTGLPSSASWQDLKDHMRRA----GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 165 (276)
Q Consensus 107 ~~~l~v~nl~~~~~~~~l~~~f~~~----g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l 165 (276)
...|+|.|+. +++.++|+.+|..| ++ ..+.-..|. .|-|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 4568899985 57889999999998 43 344444443 5889999999999999865
No 202
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.14 E-value=0.36 Score=30.32 Aligned_cols=55 Identities=22% Similarity=0.456 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEE
Q 023820 17 DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (276)
Q Consensus 17 ~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v 77 (276)
.++-++|+..+..|+ ...|... ..|| ||.|.+.++|+.++...||..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~d----~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRDD----RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEec----CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 478899999999996 3445443 2444 99999999999999999999888777654
No 203
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.67 E-value=0.24 Score=38.03 Aligned_cols=68 Identities=12% Similarity=0.224 Sum_probs=47.6
Q ss_pred CcEEEeCCCCCCCHHHHHHHhhh-cCCe---eEEEEeecCCC------CeEEEEeCCHHHHHHHHHhcCCceecccce
Q 023820 108 EYLLVTGLPSSASWQDLKDHMRR-AGDV---CFSQVFRDGSG------TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 175 (276)
Q Consensus 108 ~~l~v~nl~~~~~~~~l~~~f~~-~g~i---~~~~~~~~~~~------~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 175 (276)
..|.|.+||+.++++++.+.+.. +++. .++........ .-|||.|.+.+++..-...++|..+-+...
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 35999999999999999998877 6665 33332222111 159999999999999999999987766544
No 204
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.44 E-value=0.003 Score=53.49 Aligned_cols=77 Identities=17% Similarity=0.339 Sum_probs=65.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
++.+.|.|+|+...++.|-.|...||.|..|....+.......-|+|...+.+..|++.|||..+....++|.|-..
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 46788999999999999999999999999988754433344556789999999999999999999999999988654
No 205
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.40 E-value=0.47 Score=42.35 Aligned_cols=81 Identities=21% Similarity=0.365 Sum_probs=64.2
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhhc----CCeeEEEEecC-------------CC---------------------
Q 023820 3 SRASRTLYVGNLPGD-IREREVEDLFYKY----GPIAHIDLKIP-------------PR--------------------- 43 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~-~t~~~l~~~F~~~----G~v~~v~~~~~-------------~~--------------------- 43 (276)
+.+++.|-|.||.|. +...+|..+|+.| |.|..|.|... |.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 457899999999997 8999999999977 58889888321 11
Q ss_pred ----------------CCceEEEEecCHHHHHHHHHhcCCCccC--CceEEEEEccCC
Q 023820 44 ----------------PPGYAFVEFEEARDAEDAIRGRDGYDFD--GHRLRVELAHGG 83 (276)
Q Consensus 44 ----------------~~g~afV~f~~~e~a~~A~~~lng~~~~--g~~i~v~~a~~~ 83 (276)
.--||.|+|.+++.|.+.+..++|..|. +..|-+.|....
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDd 308 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDD 308 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCC
Confidence 0138999999999999999999999987 556666665543
No 206
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=93.33 E-value=0.55 Score=35.54 Aligned_cols=77 Identities=19% Similarity=0.267 Sum_probs=57.1
Q ss_pred CCeEEEcCCCCCCCH--H---HHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCc-eEEEEE
Q 023820 6 SRTLYVGNLPGDIRE--R---EVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-RLRVEL 79 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~--~---~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~-~i~v~~ 79 (276)
.+++.+++|+..+-. + ...++|.+|-+.....+. .+.+..-|.|.+++.|..|...+++..|.|. .++..+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l---rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL---RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH---HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 456778888876422 2 244567666666555554 4566778899999999999999999999988 999988
Q ss_pred ccCCCC
Q 023820 80 AHGGRG 85 (276)
Q Consensus 80 a~~~~~ 85 (276)
+.....
T Consensus 87 aQ~~~~ 92 (193)
T KOG4019|consen 87 AQPGHP 92 (193)
T ss_pred ccCCCc
Confidence 876543
No 207
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.26 E-value=0.11 Score=45.08 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=48.6
Q ss_pred EEEeCCCCCC-CHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccce
Q 023820 110 LLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 175 (276)
Q Consensus 110 l~v~nl~~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 175 (276)
|-+...|..+ +..+|...|.+||.|..|.+... ..-|.|+|.+..+|-+|.. .++..|+++..
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~--~~~a~vTF~t~aeag~a~~-s~~avlnnr~i 438 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS--SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFI 438 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCc--hhhheeeeeccccccchhc-cccceecCcee
Confidence 4444445554 67899999999999999998766 2368999999999977766 78888888433
No 208
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.11 E-value=0.46 Score=34.55 Aligned_cols=64 Identities=6% Similarity=0.150 Sum_probs=47.0
Q ss_pred CCCCCCcEEEe----CCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCce
Q 023820 103 VSRRSEYLLVT----GLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE 169 (276)
Q Consensus 103 ~~~~~~~l~v~----nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~ 169 (276)
..++..+|.|. |+.+.-+...+...+..||+|..|...-. ..|.|.|.+...|-.|+.+++...
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr---qsavVvF~d~~SAC~Av~Af~s~~ 149 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR---QSAVVVFKDITSACKAVSAFQSRA 149 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC---ceEEEEehhhHHHHHHHHhhcCCC
Confidence 34556667775 44444444556666789999999887543 269999999999999999987643
No 209
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.46 E-value=2 Score=30.09 Aligned_cols=63 Identities=11% Similarity=0.142 Sum_probs=47.2
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcC-CeeEEEEeecCCC--CeEEEEeCCHHHHHHHHHhcCCceecc
Q 023820 110 LLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSG--TTGIVDYTNYDDMKHAIKKLDDSEFRN 172 (276)
Q Consensus 110 l~v~nl~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~--~~~fv~f~~~~~a~~a~~~l~~~~~~g 172 (276)
+.+...|.-++..+|..+...+- .|..+.+..+... -.+.++|.+.++|.+-...+||+.+..
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 55555666666677766655554 4667888887543 368899999999999999999998864
No 210
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=92.45 E-value=0.26 Score=41.12 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=54.6
Q ss_pred cEEEeCCCCCCCHHHHHHHhhhcC--CeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccc
Q 023820 109 YLLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 174 (276)
Q Consensus 109 ~l~v~nl~~~~~~~~l~~~f~~~g--~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 174 (276)
++||+||-+-+|.++|.+.+...| .+..++++.+. .+|||+|...+....++.++.|-.+.|.|..
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 499999999999999999887766 45555555553 4579999999999999999999999998853
No 211
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=91.75 E-value=0.22 Score=37.06 Aligned_cols=111 Identities=16% Similarity=0.134 Sum_probs=70.8
Q ss_pred CCCHHHHHHHHhh-cCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCCCCCCCCCCCCCC
Q 023820 17 DIREREVEDLFYK-YGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSH 95 (276)
Q Consensus 17 ~~t~~~l~~~F~~-~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~~~~~~~~~~~~~ 95 (276)
.++...|.+.+.. ++....+.+..- ..++..+.|.+.+++..++. ...-.+.|..+.+..-.+......
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l--~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~------- 97 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL--GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSE------- 97 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe--CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccc-------
Confidence 4667777776664 343334444221 25789999999999999888 445566777777654432211100
Q ss_pred CCCCCCCCCCCCCc-EEEeCCCCCC-CHHHHHHHhhhcCCeeEEEEeecC
Q 023820 96 SSGRGRGVSRRSEY-LLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDG 143 (276)
Q Consensus 96 ~~~~~~~~~~~~~~-l~v~nl~~~~-~~~~l~~~f~~~g~i~~~~~~~~~ 143 (276)
........ |.|.|||... +++-+..+....|++..++.....
T Consensus 98 ------~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 98 ------VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred ------cceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 00111122 7788999875 788889999999999988876543
No 212
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=91.26 E-value=0.23 Score=33.18 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=43.7
Q ss_pred EEEEecCHHHHHHHHHhcC-CCccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHH
Q 023820 48 AFVEFEEARDAEDAIRGRD-GYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKD 126 (276)
Q Consensus 48 afV~f~~~e~a~~A~~~ln-g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~ 126 (276)
|+|+|.+++-|+..+..-. ...+.+..+.|............-. -.......+|.|.|+|..+.+++|.+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~q---------v~~~vs~rtVlvsgip~~l~ee~l~D 71 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQ---------VFSGVSKRTVLVSGIPDVLDEEELRD 71 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEE---------EEEcccCCEEEEeCCCCCCChhhhee
Confidence 6899999999999888321 2335566666654332111100000 00122344599999999999999987
Q ss_pred Hh
Q 023820 127 HM 128 (276)
Q Consensus 127 ~f 128 (276)
.+
T Consensus 72 ~L 73 (88)
T PF07292_consen 72 KL 73 (88)
T ss_pred eE
Confidence 64
No 213
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=89.82 E-value=0.076 Score=39.41 Aligned_cols=10 Identities=40% Similarity=0.474 Sum_probs=4.8
Q ss_pred CCCcccccch
Q 023820 254 PRSLSRYASL 263 (276)
Q Consensus 254 srs~~r~~~~ 263 (276)
.+|+++.++.
T Consensus 84 ~rs~Sp~ap~ 93 (196)
T KOG3263|consen 84 RRSVSPFAPE 93 (196)
T ss_pred hcccCCCCcc
Confidence 3455554443
No 214
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.67 E-value=0.71 Score=37.86 Aligned_cols=60 Identities=15% Similarity=0.233 Sum_probs=48.7
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceeccc
Q 023820 110 LLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 110 l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 173 (276)
|-|-++|+... ..|..+|.+||.|+..... .++.+-+|.|.+.-+|++|+. .+|+.|+|.
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii~g~ 259 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTIIDGD 259 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeeeccc
Confidence 77778776544 4566789999999877665 556699999999999999999 788888874
No 215
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.11 E-value=0.27 Score=40.90 Aligned_cols=67 Identities=18% Similarity=0.227 Sum_probs=53.1
Q ss_pred CcEEEeCCCCCCCHHHHHH---HhhhcCCeeEEEEeecCC-----C--CeEEEEeCCHHHHHHHHHhcCCceecccc
Q 023820 108 EYLLVTGLPSSASWQDLKD---HMRRAGDVCFSQVFRDGS-----G--TTGIVDYTNYDDMKHAIKKLDDSEFRNAF 174 (276)
Q Consensus 108 ~~l~v~nl~~~~~~~~l~~---~f~~~g~i~~~~~~~~~~-----~--~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 174 (276)
+.++|-+|+..+..+.+.+ .|.+||.|..+.+..+.. . .-++|.|+..++|..||...+|..++|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 4488888887775554443 589999999998887652 1 15999999999999999999999988854
No 216
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.07 E-value=2.5 Score=36.79 Aligned_cols=66 Identities=15% Similarity=0.258 Sum_probs=56.7
Q ss_pred CCcEEEeCCCCCCCHHHHHHHhhhcC-CeeEEEEeecCCC--CeEEEEeCCHHHHHHHHHhcCCceecc
Q 023820 107 SEYLLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSG--TTGIVDYTNYDDMKHAIKKLDDSEFRN 172 (276)
Q Consensus 107 ~~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~--~~~fv~f~~~~~a~~a~~~l~~~~~~g 172 (276)
...|.|-.+|..++-.||..++..+- .|..+.++.+..+ ....|.|.+.++|..-...+||..+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 55599999999999999999998765 5778888887533 368999999999999999999998875
No 217
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=87.61 E-value=1.2 Score=36.52 Aligned_cols=163 Identities=11% Similarity=0.116 Sum_probs=95.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCC----------CCCceEEEEecCHHHHHHHHHh----cC--CCc
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP----------RPPGYAFVEFEEARDAEDAIRG----RD--GYD 69 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~----------~~~g~afV~f~~~e~a~~A~~~----ln--g~~ 69 (276)
++.|.+.|+...++--.+...|-+||+|..|++.... .....+.+-|-+.+.|...+.. |+ ...
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 5788899999999999999999999999999996432 3346789999999988765443 32 234
Q ss_pred cCCceEEEEEccCCCCCCCCCC--CCCC---C-CCCC-CC-CCCCCCcEEEeCCCCCCCHHHHHHH---hhhcCC----e
Q 023820 70 FDGHRLRVELAHGGRGRSSSDR--HSSH---S-SGRG-RG-VSRRSEYLLVTGLPSSASWQDLKDH---MRRAGD----V 134 (276)
Q Consensus 70 ~~g~~i~v~~a~~~~~~~~~~~--~~~~---~-~~~~-~~-~~~~~~~l~v~nl~~~~~~~~l~~~---f~~~g~----i 134 (276)
+.-..|.|.|..-.-....... .... - ..-. .. ....+..|.|.=-.....++-+.+. +..-+. +
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~~~n~RYVl 174 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKNSNNKRYVL 174 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhccCCCceEEE
Confidence 5667777777652111111000 0000 0 0000 00 1112233555432222233323322 222332 4
Q ss_pred eEEEEeecC------CCCeEEEEeCCHHHHHHHHHhcCCc
Q 023820 135 CFSQVFRDG------SGTTGIVDYTNYDDMKHAIKKLDDS 168 (276)
Q Consensus 135 ~~~~~~~~~------~~~~~fv~f~~~~~a~~a~~~l~~~ 168 (276)
+.+.++... +..||.+.|-+..-|.+.++.+...
T Consensus 175 EsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 175 ESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred EEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 455554332 3359999999999999999987644
No 218
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=85.33 E-value=3.1 Score=33.99 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=37.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHH
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEAR 56 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e 56 (276)
.+-|+++||+.++.-.+|+..+.+.|-+ -+.|.+.| +.+-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswkg-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWKG-HFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEeeec-CCcceeEecCCcc
Confidence 3669999999999999999999887643 34444444 3678999998743
No 219
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=84.60 E-value=4.3 Score=31.39 Aligned_cols=54 Identities=9% Similarity=0.043 Sum_probs=41.4
Q ss_pred CHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcC--Cceecccce
Q 023820 120 SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD--DSEFRNAFS 175 (276)
Q Consensus 120 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~--~~~~~g~~~ 175 (276)
....|+++|..++.+.....+..-. -..|.|.+.+.|..|...|+ +..+.|...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr--Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l 63 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR--RIRVVFESPESAQRARQLLHWDGTSFNGKRL 63 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT--EEEEE-SSTTHHHHHHHTST--TSEETTEE-
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC--EEEEEeCCHHHHHHHHHHhcccccccCCCce
Confidence 4578999999999988777765532 47899999999999999999 899998543
No 220
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=84.56 E-value=1.1 Score=40.73 Aligned_cols=64 Identities=13% Similarity=0.062 Sum_probs=55.3
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccc
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 174 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 174 (276)
...++||+|+...+..+-++.+...+|-|..+.... |||..|.....+..|+..++...++|..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~k 102 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQK 102 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcch
Confidence 344599999999999999999999999888776654 9999999999999999999888887643
No 221
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=84.39 E-value=1 Score=31.97 Aligned_cols=56 Identities=23% Similarity=0.389 Sum_probs=29.2
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHH-HHHHHHH
Q 023820 8 TLYVGNLPGD---------IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEAR-DAEDAIR 63 (276)
Q Consensus 8 ~l~v~nL~~~---------~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e-~a~~A~~ 63 (276)
++.|-|++.. ++.+.|.+.|..|.+++-.-+.....+.|+++|+|...- --..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 3556677553 466789999999988764444434456789999997633 3334443
No 222
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.10 E-value=2.6 Score=36.12 Aligned_cols=56 Identities=18% Similarity=0.291 Sum_probs=44.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHh
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG 64 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~ 64 (276)
.+.|-|-|+|.....++|...|+.|+. ..++|+|-. ...||-.|.....|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvD--dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVD--DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhc-CCceeEEee--cceeEEeecchHHHHHHhhc
Confidence 467889999999999999999999975 334443311 34799999999999999993
No 223
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=81.17 E-value=0.92 Score=42.51 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=50.8
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceec
Q 023820 110 LLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 171 (276)
Q Consensus 110 l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~ 171 (276)
..+.|.+...+-.-|..+|.+||.+..++...+-+ .|.|+|...+.|..|.++++|.++-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs 360 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVS 360 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCccc
Confidence 44455566677788999999999999999877754 7999999999999999999999774
No 224
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=78.01 E-value=5.7 Score=24.47 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=16.7
Q ss_pred HHHHHHHhhcCCeeEEEEe
Q 023820 21 REVEDLFYKYGPIAHIDLK 39 (276)
Q Consensus 21 ~~l~~~F~~~G~v~~v~~~ 39 (276)
++|+++|+.+|+|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999888873
No 225
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=77.66 E-value=2.3 Score=36.21 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=48.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEec-----CCCCCceEEEEecCHHHHHHHHHhcCCCccC
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHI-DLKI-----PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v-~~~~-----~~~~~g~afV~f~~~e~a~~A~~~lng~~~~ 71 (276)
-+.|.|.+||+..++.+|.+-...|-.-... .+.. .....+.|||.|..+++.......++|..|.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 4678899999999999999888776432222 2221 1123568999999999999888888886643
No 226
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=74.36 E-value=4.3 Score=33.05 Aligned_cols=36 Identities=22% Similarity=0.474 Sum_probs=29.4
Q ss_pred CCCeEEEcCCCCCC------------CHHHHHHHHhhcCCeeEEEEec
Q 023820 5 ASRTLYVGNLPGDI------------REREVEDLFYKYGPIAHIDLKI 40 (276)
Q Consensus 5 ~~~~l~v~nL~~~~------------t~~~l~~~F~~~G~v~~v~~~~ 40 (276)
-..||++.+||-.| +++-|...|+.||.|..|.|+.
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 34689999998653 5778999999999999999843
No 227
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=72.75 E-value=1.5 Score=41.05 Aligned_cols=7 Identities=0% Similarity=-0.121 Sum_probs=4.1
Q ss_pred EEEeCCC
Q 023820 110 LLVTGLP 116 (276)
Q Consensus 110 l~v~nl~ 116 (276)
.|++++.
T Consensus 148 ~f~gvvt 154 (1194)
T KOG4246|consen 148 RFAGVVT 154 (1194)
T ss_pred eeehhhh
Confidence 6666543
No 228
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=70.68 E-value=22 Score=22.74 Aligned_cols=52 Identities=8% Similarity=0.220 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHhhhcCC-----eeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceeccc
Q 023820 117 SSASWQDLKDHMRRAGD-----VCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 117 ~~~~~~~l~~~f~~~g~-----i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 173 (276)
..++..+|..++...+. |-.+.+... |+||+-.. +.|..++..|++..+.|+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~-~~a~~v~~~l~~~~~~gk 67 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPE-EVAEKVLEALNGKKIKGK 67 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-T-T-HHHHHHHHTT--SSS-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECH-HHHHHHHHHhcCCCCCCe
Confidence 45678888888877654 455666655 88888765 478899999999999994
No 229
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.67 E-value=0.73 Score=39.79 Aligned_cols=74 Identities=7% Similarity=-0.116 Sum_probs=55.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
...++..||..++++++.-+|+.||.|..+.+.. .+-..-.+||.-.. .+|..++..+.-..+.|..+.|..+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 5678889999999999999999999998887732 33344467777665 56667777666666777777777665
No 230
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=70.25 E-value=24 Score=22.15 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=38.6
Q ss_pred CCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecc
Q 023820 118 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRN 172 (276)
Q Consensus 118 ~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g 172 (276)
.++-++++..+..|+-. .+..+..+ -||.|.+..+|+++....++..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~tG--fYIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRTG--FYIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCCE--EEEEECChHHHHHHHHhcCCCEEEE
Confidence 45788999999988732 33344432 4789999999999999999998866
No 231
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=68.78 E-value=0.62 Score=41.41 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=48.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC---CCCCceEEEEecCHHHHHHHHHhcCCCccC
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~e~a~~A~~~lng~~~~ 71 (276)
-+|+||+.|++|+++-.+|..++..+--+..+.+... .....+.+|.|.---....|+.+||+..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 3588999999999999999999998866666655221 123457788887666666666667766554
No 232
>PF14893 PNMA: PNMA
Probab=68.01 E-value=7.3 Score=33.12 Aligned_cols=78 Identities=24% Similarity=0.233 Sum_probs=44.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhh----cCCeeEEEE-ecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceE
Q 023820 1 MSSRASRTLYVGNLPGDIREREVEDLFYK----YGPIAHIDL-KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRL 75 (276)
Q Consensus 1 m~~~~~~~l~v~nL~~~~t~~~l~~~F~~----~G~v~~v~~-~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i 75 (276)
|.=++-+.|.|.+||.++++++|.+.+.. +|...-+.- .........|+|+|...-+-...=. ...-.|-+.
T Consensus 13 m~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n~~~iP~---~i~g~gg~W 89 (331)
T PF14893_consen 13 MGVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVNYSLIPR---EIPGKGGPW 89 (331)
T ss_pred cCcChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccchhhCch---hcCCCCCce
Confidence 44467789999999999999999987764 343322111 1122234578888875332211111 112235566
Q ss_pred EEEEcc
Q 023820 76 RVELAH 81 (276)
Q Consensus 76 ~v~~a~ 81 (276)
+|-+..
T Consensus 90 ~Vv~~p 95 (331)
T PF14893_consen 90 RVVFKP 95 (331)
T ss_pred EEEecC
Confidence 666544
No 233
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=67.86 E-value=5.1 Score=31.85 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=30.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL 38 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~ 38 (276)
....++|+-|||..+|++.|..+.+++|-++.+.+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 45689999999999999999999999997766554
No 234
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=64.07 E-value=3.4 Score=38.93 Aligned_cols=10 Identities=10% Similarity=0.199 Sum_probs=4.5
Q ss_pred ceEEEEecCH
Q 023820 46 GYAFVEFEEA 55 (276)
Q Consensus 46 g~afV~f~~~ 55 (276)
.|+.+.+...
T Consensus 60 ~y~~t~~~~~ 69 (1194)
T KOG4246|consen 60 VYGSTSLSSS 69 (1194)
T ss_pred cccccchhhh
Confidence 3444554433
No 235
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=63.77 E-value=45 Score=30.74 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=22.0
Q ss_pred cEEEeCCCC-CCCHHHHHHHhhhcCCeeEEEEeec
Q 023820 109 YLLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRD 142 (276)
Q Consensus 109 ~l~v~nl~~-~~~~~~l~~~f~~~g~i~~~~~~~~ 142 (276)
.++|.+++. ++...--.+.+.+.|++..|.+...
T Consensus 63 vvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRp 97 (1027)
T KOG3580|consen 63 VVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRP 97 (1027)
T ss_pred EEEEcCcchhhhHHHHHHHHHHhhccceeEEeccc
Confidence 377877764 3344445566778888887776544
No 236
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=63.18 E-value=38 Score=27.95 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=33.9
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHH
Q 023820 110 LLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYD 156 (276)
Q Consensus 110 l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~ 156 (276)
|+|+||+.++.-.+|+..+.+-+.+-.- +.-....+-||+.|.+..
T Consensus 333 i~~~nl~rd~rv~dlk~~lr~~~~~pm~-iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 333 IKLTNLSRDIRVKDLKSELRKRECTPMS-ISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred eeeccCccccchHHHHHHHHhcCCCcee-EeeecCCcceeEecCCcc
Confidence 9999999999999999999887654322 222233457999997653
No 237
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=61.46 E-value=42 Score=22.22 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=40.3
Q ss_pred EEcCCCCCCCHHHHHHHHhhc-C-CeeEEEEecCCCCCceEEEEecCHHHHHHHHHhc
Q 023820 10 YVGNLPGDIREREVEDLFYKY-G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (276)
Q Consensus 10 ~v~nL~~~~t~~~l~~~F~~~-G-~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~l 65 (276)
|+=..++.++..+|++.++.+ | .|..|..........-|||.+..-.+|.+....+
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 333578899999999999974 4 4555555444445568999999988888775543
No 238
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=60.87 E-value=3.5 Score=33.55 Aligned_cols=127 Identities=16% Similarity=0.243 Sum_probs=70.2
Q ss_pred ceEEEEecCH----HHHHHHHHhcCCCccC--C--ceEEEEEccCCCCCCCCCCCCCC----CCCCCCCCCCCCCcEEEe
Q 023820 46 GYAFVEFEEA----RDAEDAIRGRDGYDFD--G--HRLRVELAHGGRGRSSSDRHSSH----SSGRGRGVSRRSEYLLVT 113 (276)
Q Consensus 46 g~afV~f~~~----e~a~~A~~~lng~~~~--g--~~i~v~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~v~ 113 (276)
..-||.|+-. --.+..+..|+|..+. | -+|+|..+..+...+.......+ .......+...+.+|++.
T Consensus 76 nid~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidfpsrhdwdd~fm~~kdmdemkpgerpdti~la 155 (445)
T KOG2891|consen 76 NIDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLA 155 (445)
T ss_pred ccceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCCCcccchHHHHhhhhhhhccCCCCCCCceeec
Confidence 4668888643 3345566667765432 2 24444443333332222111100 001111223344557777
Q ss_pred CCCCC------------CCHHHHHHHhhhcCCeeEEEEeecC---------CC-----Ce---------EEEEeCCHHHH
Q 023820 114 GLPSS------------ASWQDLKDHMRRAGDVCFSQVFRDG---------SG-----TT---------GIVDYTNYDDM 158 (276)
Q Consensus 114 nl~~~------------~~~~~l~~~f~~~g~i~~~~~~~~~---------~~-----~~---------~fv~f~~~~~a 158 (276)
++|-. .++..|...|..||.|..|.++.-. .. +| |||+|......
T Consensus 156 ~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgf 235 (445)
T KOG2891|consen 156 GIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGF 235 (445)
T ss_pred CCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhH
Confidence 76642 3567899999999999998875331 11 12 56777777777
Q ss_pred HHHHHhcCCceecc
Q 023820 159 KHAIKKLDDSEFRN 172 (276)
Q Consensus 159 ~~a~~~l~~~~~~g 172 (276)
..|+..|.|..+.-
T Consensus 236 a~amdalr~~k~ak 249 (445)
T KOG2891|consen 236 AQAMDALRGMKLAK 249 (445)
T ss_pred HHHHHHHhcchHHh
Confidence 78888888876653
No 239
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=58.43 E-value=48 Score=21.52 Aligned_cols=57 Identities=16% Similarity=0.185 Sum_probs=40.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhhc-C-CeeEEEEecCCCCCceEEEEecCHHHHHHHHHhc
Q 023820 9 LYVGNLPGDIREREVEDLFYKY-G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (276)
Q Consensus 9 l~v~nL~~~~t~~~l~~~F~~~-G-~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~l 65 (276)
-|+=.+++.++..+|++.++.+ | .|..|..........-|||.+..-+.|.+.-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 3444678999999999999874 4 4555555443445567999998888887665433
No 240
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=56.97 E-value=5.8 Score=26.50 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFY 28 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~ 28 (276)
-..++|.|.|||..+++++|++.++
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEE
Confidence 3568999999999999999987654
No 241
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=56.82 E-value=64 Score=28.15 Aligned_cols=37 Identities=16% Similarity=0.433 Sum_probs=30.0
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhhc----CCeeEEEEe
Q 023820 3 SRASRTLYVGNLPGD-IREREVEDLFYKY----GPIAHIDLK 39 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~-~t~~~l~~~F~~~----G~v~~v~~~ 39 (276)
+.++..|-|-||.|. +...+|..+|+.| |.|..|.|.
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iy 184 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIY 184 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEec
Confidence 568889999999996 8888999999876 566667764
No 242
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=55.58 E-value=18 Score=27.66 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=33.3
Q ss_pred CCHHHHHHHHhh-cCCeeEEEEec--CC--CCCceEEEEecCHHHHHHHHH
Q 023820 18 IREREVEDLFYK-YGPIAHIDLKI--PP--RPPGYAFVEFEEARDAEDAIR 63 (276)
Q Consensus 18 ~t~~~l~~~F~~-~G~v~~v~~~~--~~--~~~g~afV~f~~~e~a~~A~~ 63 (276)
.|+++|..+..- -|.+..|.+.. ++ ..+|-.||.|...++|.+.+.
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 566666655442 27888888843 22 457899999999999998777
No 243
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=54.65 E-value=32 Score=22.88 Aligned_cols=49 Identities=22% Similarity=0.296 Sum_probs=33.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEec
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFE 53 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~ 53 (276)
...-|||+|++..+-+.-...+.+..+.=.-+-+..+....||+|-..-
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeC
Confidence 3466999999988887766666665554444444444447788888773
No 244
>KOG3869 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.76 E-value=4.9 Score=34.70 Aligned_cols=17 Identities=18% Similarity=-0.062 Sum_probs=8.0
Q ss_pred CCcccccchhheeeeee
Q 023820 255 RSLSRYASLLSFVMHVG 271 (276)
Q Consensus 255 rs~~r~~~~~~~~~~~~ 271 (276)
|--.+.+.|++-.+-.|
T Consensus 309 R~~r~~~~~~~~~~~~~ 325 (450)
T KOG3869|consen 309 RQARRHSSYGNREREKR 325 (450)
T ss_pred ccccccccccccccccc
Confidence 33344455555544444
No 245
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=49.84 E-value=97 Score=22.69 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=36.3
Q ss_pred HHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 20 EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 20 ~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
|.+|+..|- |.-+..+.++.......+-+..+.+.. ...++..|.+..+.|++|.|....
T Consensus 2 e~~lkAa~l-~nf~~f~~WP~~~~~~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 2 EYQLKAAYL-YNFAKFIEWPDSAPSSPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred HHHHHHHHH-HHhHhhccCCCCCCCCCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEECC
Confidence 445554442 111333444433233456677777655 445677789999999999997653
No 246
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=49.64 E-value=24 Score=29.88 Aligned_cols=33 Identities=27% Similarity=0.238 Sum_probs=23.8
Q ss_pred EEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 48 AFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 48 afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
|||+|.+..+|+.|++.+.... +..+.+..|..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC
Confidence 7999999999999999654433 24456665543
No 247
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=49.21 E-value=1.9e+02 Score=27.03 Aligned_cols=98 Identities=15% Similarity=0.161 Sum_probs=58.7
Q ss_pred HHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcC--CCc-----c-CCceEEEEEccCCCCCCCCCC
Q 023820 20 EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYD-----F-DGHRLRVELAHGGRGRSSSDR 91 (276)
Q Consensus 20 ~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~ln--g~~-----~-~g~~i~v~~a~~~~~~~~~~~ 91 (276)
.++|.+.|..-+-|..|.+. ..||-++.+....-+......+. +.. + .|++|.|+++.+
T Consensus 60 A~~i~~~l~~~~~~~~veia----GpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSa--------- 126 (577)
T COG0018 60 AEEIAEKLDTDEIIEKVEIA----GPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSA--------- 126 (577)
T ss_pred HHHHHHhccccCcEeEEEEc----CCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCC---------
Confidence 34455555554446667664 23444444443333333333333 222 2 478999999743
Q ss_pred CCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcC-CeeEEEEeecC
Q 023820 92 HSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDG 143 (276)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~~~~~~~~ 143 (276)
.+...++||-+-..+=-+-|..++...| +|.......|.
T Consensus 127 -------------NptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~ 166 (577)
T COG0018 127 -------------NPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDW 166 (577)
T ss_pred -------------CCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcH
Confidence 3445588998888888888999999888 56666655553
No 248
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=48.08 E-value=72 Score=20.43 Aligned_cols=43 Identities=14% Similarity=0.097 Sum_probs=30.2
Q ss_pred HHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhc
Q 023820 21 REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (276)
Q Consensus 21 ~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~l 65 (276)
.+|.+++..+| +....+.-.|. -+++|+.+.+.+.++.++..+
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~-G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGG-GPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSS-SSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCC-CCeEEEEECCHHHHHHHHHHH
Confidence 45777778888 66666653321 457888888888888887765
No 249
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=47.87 E-value=69 Score=20.18 Aligned_cols=60 Identities=22% Similarity=0.347 Sum_probs=38.7
Q ss_pred HHHHHHHhhcC-CeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 21 REVEDLFYKYG-PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 21 ~~l~~~F~~~G-~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
++|.+-|...| +|..|.-+. +.......||+.+...+...+ ++=..+.+..|.|+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 56778888777 455554433 334556788888776553333 4445678899999876543
No 250
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=46.48 E-value=59 Score=18.98 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=28.0
Q ss_pred HHHHHHHhhcC-CeeEEEEecCCCCCceEEEEecCHHHHHHHH
Q 023820 21 REVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAI 62 (276)
Q Consensus 21 ~~l~~~F~~~G-~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~ 62 (276)
.+|.++|.+.| .|..+.+.......+...+.+.+.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 34556666654 5667766544345667778888888888775
No 251
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=46.08 E-value=77 Score=21.55 Aligned_cols=55 Identities=20% Similarity=0.347 Sum_probs=33.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhc--------CCeeEEEE--------ecCCCCCc-eEEEEecCHHHHHHHHHh
Q 023820 8 TLYVGNLPGDIREREVEDLFYKY--------GPIAHIDL--------KIPPRPPG-YAFVEFEEARDAEDAIRG 64 (276)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~--------G~v~~v~~--------~~~~~~~g-~afV~f~~~e~a~~A~~~ 64 (276)
++|| |.++++++++..+.+.+ |.|..+.- .......| |.++.|.-..++.+.++.
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 3444 56778888776665543 45655543 11334556 678889876777666663
No 252
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=46.08 E-value=80 Score=26.13 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=14.0
Q ss_pred EEEecCHHHHHHHHHhcCC-CccCCceEEEE
Q 023820 49 FVEFEEARDAEDAIRGRDG-YDFDGHRLRVE 78 (276)
Q Consensus 49 fV~f~~~e~a~~A~~~lng-~~~~g~~i~v~ 78 (276)
+|-|++.--++-.+..|.. ..++-+.++|.
T Consensus 56 ilgfEDdVViefvynqLee~k~ldpkkmQiN 86 (354)
T KOG2146|consen 56 ILGFEDDVVIEFVYNQLEEAKNLDPKKMQIN 86 (354)
T ss_pred hhccccchhHHHHHHHHhhhcCCCchheeee
Confidence 4445554444444444443 34444444443
No 253
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=44.96 E-value=17 Score=19.66 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHHhhcCC
Q 023820 16 GDIREREVEDLFYKYGP 32 (276)
Q Consensus 16 ~~~t~~~l~~~F~~~G~ 32 (276)
.++++++|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46889999999987653
No 254
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=44.91 E-value=90 Score=20.66 Aligned_cols=56 Identities=16% Similarity=0.113 Sum_probs=40.6
Q ss_pred EEEeCCCCCCCHHHHHHHhhh-cC-CeeEEEEeecCCC-CeEEEEeCCHHHHHHHHHhc
Q 023820 110 LLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSG-TTGIVDYTNYDDMKHAIKKL 165 (276)
Q Consensus 110 l~v~nl~~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~~l 165 (276)
.|+-..+..++..++++.+.. || +|..|....-+.+ .-|||.+..-..|.+....+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 344445677899999998876 55 6777777666544 26999999988888776544
No 255
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=44.43 E-value=46 Score=22.71 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=30.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCH
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA 55 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~ 55 (276)
..-|||++++..+-+.--..+-+.++.=.-+-+..+....||+|-.+-+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCCC
Confidence 45689999888876655444545454333333334445568988887653
No 256
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=44.26 E-value=31 Score=21.92 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=23.3
Q ss_pred ceEEEEecCHHHHHHHHHhcCCCccCCceE
Q 023820 46 GYAFVEFEEARDAEDAIRGRDGYDFDGHRL 75 (276)
Q Consensus 46 g~afV~f~~~e~a~~A~~~lng~~~~g~~i 75 (276)
.+++|.|.+..+|.+|-+.|....+..+.+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~li 31 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLI 31 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEe
Confidence 478999999999999999887665543333
No 257
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=43.53 E-value=37 Score=29.22 Aligned_cols=63 Identities=13% Similarity=0.262 Sum_probs=46.7
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCCeeE-EEEeecCCC------CeEEEEeCCHHHHHHHHHhcCCceecc
Q 023820 110 LLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDGSG------TTGIVDYTNYDDMKHAIKKLDDSEFRN 172 (276)
Q Consensus 110 l~v~nl~~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~------~~~fv~f~~~~~a~~a~~~l~~~~~~g 172 (276)
|.|..||+..++++|.+....+-.-.. ..+...... ..+||.|..+++...-...++|..+-.
T Consensus 10 vv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 10 VVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred eeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 788899999999999998888764333 333322111 269999999999888888888876644
No 258
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=42.73 E-value=53 Score=21.61 Aligned_cols=34 Identities=38% Similarity=0.515 Sum_probs=24.1
Q ss_pred eeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCC
Q 023820 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68 (276)
Q Consensus 33 v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~ 68 (276)
|.++.. .+..+||.|||=.++.++..|+..+.+.
T Consensus 34 I~Si~~--~~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 34 IYSIFA--PDSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp --EEEE---TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred eEEEEE--eCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 444433 3457999999999999999999977653
No 259
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=42.42 E-value=63 Score=29.35 Aligned_cols=59 Identities=22% Similarity=0.323 Sum_probs=43.2
Q ss_pred EEcCCCCCCC---HHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceE
Q 023820 10 YVGNLPGDIR---EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRL 75 (276)
Q Consensus 10 ~v~nL~~~~t---~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i 75 (276)
+||||+.-.. ...+.++-++||+|-.+++=. .-.|...+.+.|.+|+. -|+..+.+++.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~------~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS------VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC------ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 4566654333 345666667899999887721 23788889999999999 77999999886
No 260
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=41.72 E-value=86 Score=19.88 Aligned_cols=59 Identities=22% Similarity=0.332 Sum_probs=38.2
Q ss_pred HHHHHHHhhcC-CeeEEEEecC---CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 21 REVEDLFYKYG-PIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 21 ~~l~~~F~~~G-~v~~v~~~~~---~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
.+|.+.|..+| ++..+.-+.. ..+...-||+.....+... .|+=+.|+|+.+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 47888888888 4555555432 2344577888776544333 3555678899999987654
No 261
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=41.07 E-value=21 Score=32.19 Aligned_cols=75 Identities=28% Similarity=0.441 Sum_probs=49.2
Q ss_pred EcCCCCCCCHHHHHHHHh-hcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCCCCCC
Q 023820 11 VGNLPGDIREREVEDLFY-KYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRS 87 (276)
Q Consensus 11 v~nL~~~~t~~~l~~~F~-~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~~~~~ 87 (276)
+.++|+.+-..++..-+. .++....- ..-.....++++.|+++..+.+|+..++|..+.+..+.+..+.......
T Consensus 30 ~e~~~~~~~q~~~~k~~~~~~~~~~s~--tk~~~~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~~~~ 105 (534)
T KOG2187|consen 30 IEMIPTFIGQKQLNKVLLKILRDVKSK--TKLPKMPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEVGSL 105 (534)
T ss_pred eeccCchhhhhHHHhhhhhhccccccc--CCCCCCCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccccccc
Confidence 345555555555444333 33322221 0112335699999999999999999999999999988888776554443
No 262
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=40.30 E-value=1.4e+02 Score=22.66 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=40.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhc
Q 023820 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (276)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~l 65 (276)
++-| +|+..+.++-|.++.+-+|-|....- ..-.+.|-+.+..+.|++.+
T Consensus 114 ~iRv-~l~~~i~~erl~ei~E~~gvI~Efee-------~~~V~I~Gdke~Ik~aLKe~ 163 (169)
T PF09869_consen 114 TIRV-KLKKPIQEERLQEISEWHGVIFEFEE-------DDKVVIEGDKERIKKALKEF 163 (169)
T ss_pred eEEE-ecCccchHHHHHHHHHHhceeEEecC-------CcEEEEeccHHHHHHHHHHH
Confidence 4445 89999999999999999998876621 13478899999999999866
No 263
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=40.23 E-value=99 Score=19.76 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=30.8
Q ss_pred HHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcC
Q 023820 122 QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 166 (276)
Q Consensus 122 ~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 166 (276)
.++.+.+..+| +..+.+.-...+++.|+-+.+.+.++++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 46677777888 444455444446688888889999888887663
No 264
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=40.08 E-value=64 Score=26.84 Aligned_cols=55 Identities=7% Similarity=0.123 Sum_probs=43.8
Q ss_pred CCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC-----------CCCeEEEEeCCHHHHHHH
Q 023820 107 SEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-----------SGTTGIVDYTNYDDMKHA 161 (276)
Q Consensus 107 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~-----------~~~~~fv~f~~~~~a~~a 161 (276)
+..|.+.|+...++--.+...|-+||+|+.|.++.+. ......+.|-+.+.+..-
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdF 80 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDF 80 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHH
Confidence 3348889999999999999999999999999998775 112577888887776543
No 265
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=39.22 E-value=85 Score=18.75 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=39.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCH----HHHHHHHHh
Q 023820 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA----RDAEDAIRG 64 (276)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~----e~a~~A~~~ 64 (276)
|+.|.||.-.--...|.+.+...-.|..+.+.. ..+.+-|.|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~---~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDL---ETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEET---TTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEEC---CCCEEEEEEecCCCCHHHHHHHHHH
Confidence 567777777777788999999887798888863 346788888744 555566654
No 266
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=38.98 E-value=1.1e+02 Score=19.89 Aligned_cols=56 Identities=14% Similarity=0.091 Sum_probs=40.2
Q ss_pred EEEeCCCCCCCHHHHHHHhhh-cC-CeeEEEEeecCCCC-eEEEEeCCHHHHHHHHHhc
Q 023820 110 LLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKKL 165 (276)
Q Consensus 110 l~v~nl~~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~~-~~fv~f~~~~~a~~a~~~l 165 (276)
.|+-.++..++..+|+..++. || +|..+..+.-+... -|||.+..-..|.+.-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 455556778899999988876 45 56677666655442 6999998888887765543
No 267
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=37.11 E-value=98 Score=18.85 Aligned_cols=43 Identities=14% Similarity=0.235 Sum_probs=28.1
Q ss_pred HHHHHHHHhhcC-CeeEEEEecCCCCCceEEEEecCHHHHHHHHH
Q 023820 20 EREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (276)
Q Consensus 20 ~~~l~~~F~~~G-~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~ 63 (276)
-.+|.++|.+.| .|.++....... ++..-+.+.+.+.|.+++.
T Consensus 15 La~v~~~l~~~~inI~~i~~~~~~~-~~~~rl~~~~~~~~~~~L~ 58 (66)
T cd04908 15 LAAVTEILSEAGINIRALSIADTSE-FGILRLIVSDPDKAKEALK 58 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecCC-CCEEEEEECCHHHHHHHHH
Confidence 456777887765 567776644333 4555566777777777777
No 268
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=36.75 E-value=67 Score=21.64 Aligned_cols=52 Identities=12% Similarity=0.045 Sum_probs=33.8
Q ss_pred CCCCCCCHHHHHHHHhhcCCeeE-EEEecCCCCCceEEEEecCHHHHHHHHHhc
Q 023820 13 NLPGDIREREVEDLFYKYGPIAH-IDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (276)
Q Consensus 13 nL~~~~t~~~l~~~F~~~G~v~~-v~~~~~~~~~g~afV~f~~~e~a~~A~~~l 65 (276)
-+.+.++..+|...|..-|.-.. ..+- ...=+.+|.|.|.+.+.+..|+..|
T Consensus 19 S~~p~l~~~~i~~Q~~~~gkk~~pp~lR-kD~W~pm~vv~f~~~~~g~~~yq~L 71 (91)
T PF12829_consen 19 SQTPNLDNNQILKQFPFPGKKNKPPSLR-KDYWRPMCVVNFPNYEVGVSAYQKL 71 (91)
T ss_pred ecCcccChhHHHHhccCCCcccCCchhc-cccceEeEEEECCChHHHHHHHHHH
Confidence 35567788888877766553111 1110 1111459999999999999998866
No 269
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=36.68 E-value=11 Score=23.81 Aligned_cols=39 Identities=23% Similarity=0.241 Sum_probs=26.8
Q ss_pred HHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcC
Q 023820 21 REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (276)
Q Consensus 21 ~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~ln 66 (276)
++|.+.|..++....+.-. .+|..|.+.++|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~vkL-------~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL-------KAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh-------hhccCCCCHHHHHHHHHHhh
Confidence 6788888766544433222 58999999999888776543
No 270
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=36.56 E-value=1.4e+02 Score=23.41 Aligned_cols=48 Identities=17% Similarity=0.108 Sum_probs=34.4
Q ss_pred CCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcC
Q 023820 18 IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (276)
Q Consensus 18 ~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~ln 66 (276)
.+.++..++...++.-. +.|+.++...|-+.+...+.++|..|+..+-
T Consensus 24 ~~~~~A~~~l~~~~~p~-~ViKadGla~GKGV~i~~~~~eA~~~l~~~~ 71 (194)
T PF01071_consen 24 TDYEEALEYLEEQGYPY-VVIKADGLAAGKGVVIADDREEALEALREIF 71 (194)
T ss_dssp SSHHHHHHHHHHHSSSE-EEEEESSSCTTTSEEEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCc-eEEccCCCCCCCEEEEeCCHHHHHHHHHHhc
Confidence 36777888888776433 5556666655666777799999999988753
No 271
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=35.64 E-value=20 Score=30.42 Aligned_cols=50 Identities=16% Similarity=0.078 Sum_probs=39.2
Q ss_pred CCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCC
Q 023820 18 IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68 (276)
Q Consensus 18 ~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~ 68 (276)
++...|.+++++.|.|..-.|..+ .+-|.+||....++++.++++.|.+.
T Consensus 273 ~~~p~iF~~i~~~G~v~~~EM~rt-FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 273 WPPPPIFKWLQKAGNVEREEMYRT-FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCCcHHHHHHHHhcCCCHHHHHHH-hcCccceEEEEcHHHHHHHHHHHHhc
Confidence 346788889999998876555322 34688999999999999999998865
No 272
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.42 E-value=86 Score=27.33 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=41.3
Q ss_pred cEEEeCCCCCCCHHHHHHHhhhcCCee-EEEEeecCCCCeEEEEeCCHHHHHHHHHh
Q 023820 109 YLLVTGLPSSASWQDLKDHMRRAGDVC-FSQVFRDGSGTTGIVDYTNYDDMKHAIKK 164 (276)
Q Consensus 109 ~l~v~nl~~~~~~~~l~~~f~~~g~i~-~~~~~~~~~~~~~fv~f~~~~~a~~a~~~ 164 (276)
.|-|.++|.....+||...|..|+.-- .|.-+.+ ..+|-.|.....|..|+..
T Consensus 393 VlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd---thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 393 VLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD---THALAVFSSVNRAAEALTL 446 (528)
T ss_pred eeEeccCchhhccHHHHHHHHHhhcCCceeEEeec---ceeEEeecchHHHHHHhhc
Confidence 388999999999999999999998533 2333333 2688899999999999884
No 273
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=34.89 E-value=44 Score=24.51 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=28.2
Q ss_pred EEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEecC
Q 023820 9 LYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIP 41 (276)
Q Consensus 9 l~v~nL~~~-~t~~~l~~~F~~~G~v~~v~~~~~ 41 (276)
|.|.|||.. .+++.|..+.+.+|++..+.....
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 667899998 788889999999999999988643
No 274
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=34.36 E-value=61 Score=26.62 Aligned_cols=27 Identities=26% Similarity=0.112 Sum_probs=22.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCe
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPI 33 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v 33 (276)
-...|+|||++++-.-|..++...-.+
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 356789999999999999999865444
No 275
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=34.13 E-value=1.8e+02 Score=20.98 Aligned_cols=71 Identities=14% Similarity=0.049 Sum_probs=48.3
Q ss_pred CCeEEEcCCCCC---CCHHHHHHHHhhcC-CeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 6 SRTLYVGNLPGD---IREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 6 ~~~l~v~nL~~~---~t~~~l~~~F~~~G-~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
.-.|.|...... .+...|.+....-| .++.+... .+...|.|.+.++-.+|.+.|....-++..|.+..+.
T Consensus 35 dpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~-----~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 35 ESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE-----NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred CceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee-----CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 455667665333 56777888888776 34444443 3478999999999888888887666556666665543
No 276
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=33.72 E-value=1.9e+02 Score=26.89 Aligned_cols=12 Identities=17% Similarity=-0.053 Sum_probs=6.3
Q ss_pred EEeCCHHHHHHH
Q 023820 150 VDYTNYDDMKHA 161 (276)
Q Consensus 150 v~f~~~~~a~~a 161 (276)
|.|++...|-+.
T Consensus 69 vsMenv~haFAv 80 (1027)
T KOG3580|consen 69 VSMENVLHAFAV 80 (1027)
T ss_pred cchhhhHHHHHH
Confidence 456665555433
No 277
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=33.67 E-value=2e+02 Score=21.39 Aligned_cols=33 Identities=39% Similarity=0.478 Sum_probs=24.8
Q ss_pred eeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCC
Q 023820 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (276)
Q Consensus 33 v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng 67 (276)
|.++.++ ...+||.||+....+++..++..+.+
T Consensus 36 i~~i~vp--~~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAP--PELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEcc--CCCCcEEEEEEEChHHHHHHHhcCCC
Confidence 5555443 24689999999988888899887755
No 278
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=33.24 E-value=1.2e+02 Score=19.41 Aligned_cols=39 Identities=26% Similarity=0.397 Sum_probs=27.4
Q ss_pred HHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCcc
Q 023820 26 LFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (276)
Q Consensus 26 ~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~ 70 (276)
-+.+||.|..+.-. ..|+ |-|-|.++++..++.|....|
T Consensus 16 ~L~kfG~i~Y~Skk-----~kYv-vlYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 16 QLRKFGDIHYVSKK-----MKYV-VLYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred hHhhcccEEEEECC-----ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 35589999887542 3354 567888999999888866543
No 279
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=32.10 E-value=1.7e+02 Score=21.68 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=35.5
Q ss_pred EEcCCCCCCCHHHHHHHHhhcCCee--EEEEecCCCCCceEEEEecCHHHHHHHHH
Q 023820 10 YVGNLPGDIREREVEDLFYKYGPIA--HIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (276)
Q Consensus 10 ~v~nL~~~~t~~~l~~~F~~~G~v~--~v~~~~~~~~~g~afV~f~~~e~a~~A~~ 63 (276)
|+=.++..++..+|++.++.+-.|. .|.........--|||.+....+|.+...
T Consensus 85 yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 85 LVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 3335788899999999998743344 44443333344579999987777655444
No 280
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=31.33 E-value=1.3e+02 Score=23.62 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=36.7
Q ss_pred CCHHHHHHHHhhcCC---eeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccC
Q 023820 18 IREREVEDLFYKYGP---IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (276)
Q Consensus 18 ~t~~~l~~~F~~~G~---v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~ 71 (276)
.+.+++.+....+|. |....++.-+..++-+...-.++++|..+...|=|..+.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 467888888887764 444444555566654444455789999999888888775
No 281
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=31.16 E-value=2.1e+02 Score=21.23 Aligned_cols=33 Identities=9% Similarity=0.043 Sum_probs=24.4
Q ss_pred eeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCC
Q 023820 134 VCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD 167 (276)
Q Consensus 134 i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~ 167 (276)
|..+.+ .....||.||+....+++..++..+.+
T Consensus 36 i~~i~v-p~~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILA-PPELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEc-cCCCCcEEEEEEEChHHHHHHHhcCCC
Confidence 344443 444678999999988999999987765
No 282
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=31.10 E-value=1.1e+02 Score=20.47 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=28.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEecCCCCCceEEEEecC
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYK-YGPIAHIDLKIPPRPPGYAFVEFEE 54 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~-~G~v~~v~~~~~~~~~g~afV~f~~ 54 (276)
...-|||++++..+-+.--..+-+. .++=.-+-+..+....||.|-.+-+
T Consensus 24 v~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 24 PRAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCCCCCCcEEEecCC
Confidence 3456899998887765543333333 2332222233344566788877654
No 283
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=31.02 E-value=1.6e+02 Score=27.77 Aligned_cols=68 Identities=10% Similarity=0.142 Sum_probs=51.0
Q ss_pred eEEEcCC--CCCCCHHHHHHHHhhcCCeeE-----EEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 8 TLYVGNL--PGDIREREVEDLFYKYGPIAH-----IDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 8 ~l~v~nL--~~~~t~~~l~~~F~~~G~v~~-----v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.+|| |+ -..++..+|..++..-+.|.. |.|. ..|.||+... +.|...+..|++..+.|++|.|+.+
T Consensus 488 ~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~-----~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (629)
T PRK11634 488 LYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF-----ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLL 560 (629)
T ss_pred EEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe-----CCceEEEcCh-hhHHHHHHHhccccccCCceEEEEC
Confidence 3555 44 345888999888887665543 4454 5589999876 6688889989999999999999987
Q ss_pred cC
Q 023820 81 HG 82 (276)
Q Consensus 81 ~~ 82 (276)
..
T Consensus 561 ~~ 562 (629)
T PRK11634 561 GD 562 (629)
T ss_pred CC
Confidence 53
No 284
>PF15063 TC1: Thyroid cancer protein 1
Probab=30.92 E-value=35 Score=21.94 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=20.4
Q ss_pred EEcCCCCCCCHHHHHHHHhhcCCe
Q 023820 10 YVGNLPGDIREREVEDLFYKYGPI 33 (276)
Q Consensus 10 ~v~nL~~~~t~~~l~~~F~~~G~v 33 (276)
-+.||=.+++.++|..||..-|..
T Consensus 29 asaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 29 ASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhhccCHHHHHHHHHHccch
Confidence 356788899999999999999865
No 285
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=29.98 E-value=1e+02 Score=21.05 Aligned_cols=45 Identities=24% Similarity=0.386 Sum_probs=26.8
Q ss_pred EEEcCCCCCCCHHHHHH---HHhhcCCeeEEEE-----ecCCCCCceEEEEec
Q 023820 9 LYVGNLPGDIREREVED---LFYKYGPIAHIDL-----KIPPRPPGYAFVEFE 53 (276)
Q Consensus 9 l~v~nL~~~~t~~~l~~---~F~~~G~v~~v~~-----~~~~~~~g~afV~f~ 53 (276)
.|+.|||.++-+.++.. .|..+++-..|.. .....+.|++.+.+.
T Consensus 13 a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 13 AFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 57889999998887654 5555554444544 223456666655554
No 286
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=29.52 E-value=1.4e+02 Score=20.37 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCC
Q 023820 17 DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (276)
Q Consensus 17 ~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng 67 (276)
.-.+++|..+...=|.|.+|.+.-+....=.+.+...+..+++..++.|+.
T Consensus 8 ~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 8 DEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 345667777777678899999865444444667788999999999998753
No 287
>PRK11901 hypothetical protein; Reviewed
Probab=29.40 E-value=1.6e+02 Score=25.10 Aligned_cols=49 Identities=18% Similarity=0.275 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEE--EecCHHHHHHHHHhcCC
Q 023820 17 DIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFV--EFEEARDAEDAIRGRDG 67 (276)
Q Consensus 17 ~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV--~f~~~e~a~~A~~~lng 67 (276)
.-.++.|..|..+++ +..+++.. .|+.+ |..| .|.+.++|..|+..|-.
T Consensus 253 as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 253 ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 346888888888876 44455533 33333 3333 48899999999998754
No 288
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=28.73 E-value=45 Score=26.74 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=29.2
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEE
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQV 139 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~ 139 (276)
....++|+-|+|...+++.|.....+.|.+..+.+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 34567999999999999999999999997665544
No 289
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=28.49 E-value=1.4e+02 Score=27.19 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=34.7
Q ss_pred CHHHHHHHHh----hcCCeeEEEEecC--CCCCceEEEEecCHHHHHHHHHhcC
Q 023820 19 REREVEDLFY----KYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRD 66 (276)
Q Consensus 19 t~~~l~~~F~----~~G~v~~v~~~~~--~~~~g~afV~f~~~e~a~~A~~~ln 66 (276)
+.-+|..+|. .+|-|..+.+... +......++.|.+.++|..|+..+.
T Consensus 202 ~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 202 PGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 3456777776 6888888888443 2334577889999999999988754
No 290
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=27.89 E-value=96 Score=18.34 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=22.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCe
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPI 33 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v 33 (276)
..++|.+..+..+.++|.+++..+|--
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 467888877788999999999999863
No 291
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=26.85 E-value=1.9e+02 Score=24.93 Aligned_cols=44 Identities=7% Similarity=0.119 Sum_probs=28.3
Q ss_pred CCCCCCCHHHHHHHHhhc-CCeeEEEEecC--------CCCCceEEEEecCHH
Q 023820 13 NLPGDIREREVEDLFYKY-GPIAHIDLKIP--------PRPPGYAFVEFEEAR 56 (276)
Q Consensus 13 nL~~~~t~~~l~~~F~~~-G~v~~v~~~~~--------~~~~g~afV~f~~~e 56 (276)
.|...++.++|.++|..| ..-..|.+... -....||.|-|...+
T Consensus 252 ~l~~~~t~~~i~~~y~~~Y~~epfVrv~~~~~~P~~k~V~GsN~cdIgf~~d~ 304 (349)
T COG0002 252 KLKDLVTLEELHAAYEEFYAGEPFVRVVPEGGYPDTKAVAGSNFCDIGFAVDE 304 (349)
T ss_pred ecCCCCCHHHHHHHHHHHhCCCCeEEEecCCCCCChhhhcCCcceEEEEEEcC
Confidence 455568999999999864 44444555321 134568888877655
No 292
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=26.74 E-value=2.2e+02 Score=19.71 Aligned_cols=43 Identities=16% Similarity=0.356 Sum_probs=28.9
Q ss_pred HHHHHHHhhhcCCeeEEEEeecC-CCCeEEEEeCCHHHHHHHHH
Q 023820 121 WQDLKDHMRRAGDVCFSQVFRDG-SGTTGIVDYTNYDDMKHAIK 163 (276)
Q Consensus 121 ~~~l~~~f~~~g~i~~~~~~~~~-~~~~~fv~f~~~~~a~~a~~ 163 (276)
..+|.++++..|.-.+..+..++ +..||++++.+.++.-.++.
T Consensus 26 WPE~~a~lk~agi~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 26 WPELLALLKEAGIRNYSIFLDEEENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred cHHHHHHHHHcCCceeEEEecCCcccEEEEEEEcChHHHHHHHh
Confidence 35788888888876665555443 44599999996655544443
No 293
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=26.56 E-value=35 Score=29.60 Aligned_cols=58 Identities=24% Similarity=0.305 Sum_probs=42.0
Q ss_pred CeEEEcCCCCCCCH--------HHHHHHHhh--cCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHh
Q 023820 7 RTLYVGNLPGDIRE--------REVEDLFYK--YGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRG 64 (276)
Q Consensus 7 ~~l~v~nL~~~~t~--------~~l~~~F~~--~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~ 64 (276)
+.+|+.++...... +++...|.. .+++..+.+.. .....|..|++|...+.|+.++..
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~ 245 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNG 245 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhcc
Confidence 45666666665443 489999998 56777776632 446678899999999999988853
No 294
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.40 E-value=2.1e+02 Score=21.08 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=35.7
Q ss_pred CCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhc
Q 023820 13 NLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (276)
Q Consensus 13 nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~l 65 (276)
.|+..+.++-|.++.+..|-|....-. -..+.|.+.+.+..|++.+
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~E~-------D~V~i~Gd~drVk~aLke~ 163 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFEEY-------DLVAIYGDSDRVKKALKEI 163 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEeeec-------cEEEEeccHHHHHHHHHHH
Confidence 356677888899999999988776522 2356789999999999865
No 295
>COG0090 RplB Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]
Probab=25.87 E-value=82 Score=25.80 Aligned_cols=51 Identities=16% Similarity=0.192 Sum_probs=29.2
Q ss_pred CCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeE-----EEEeecCCCCeEEEEeCC
Q 023820 103 VSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCF-----SQVFRDGSGTTGIVDYTN 154 (276)
Q Consensus 103 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~-----~~~~~~~~~~~~fv~f~~ 154 (276)
.-...++|-+.|+|..+.-.-|+.....-|.+.. +.++ .....|+.|.+.+
T Consensus 123 ~ik~GN~lpL~~IP~Gt~VhNVE~~pG~GGq~aRSaGtyA~vv-~~~~~y~~vrLpS 178 (275)
T COG0090 123 DIKPGNALPLGNIPEGTIVHNVELKPGDGGQLARSAGTYAQVV-GKEGNYVIVRLPS 178 (275)
T ss_pred CcCCcceeeeccCCCCceEEeeeeccCCCceEEEeCCceEEEE-EccCCEEEEECCC
Confidence 3445667889999988776656555555555432 2222 2224466665544
No 296
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=25.87 E-value=1.9e+02 Score=18.65 Aligned_cols=60 Identities=13% Similarity=0.235 Sum_probs=38.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcC-------CeeEEEEec-CCCCCceEEEEecCHHHHHHHHHhcCCCc
Q 023820 9 LYVGNLPGDIREREVEDLFYKYG-------PIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYD 69 (276)
Q Consensus 9 l~v~nL~~~~t~~~l~~~F~~~G-------~v~~v~~~~-~~~~~g~afV~f~~~e~a~~A~~~lng~~ 69 (276)
|...+||..+|.++|..+...-- .|.-+.-.. ....+-||+.+=.++|.+.++-. ..|..
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~-~aG~p 70 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHAR-RAGLP 70 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHH-HcCCC
Confidence 45678999999999988776532 233333222 23446677777778877777766 33543
No 297
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=25.79 E-value=24 Score=22.20 Aligned_cols=25 Identities=16% Similarity=0.367 Sum_probs=18.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhh
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYK 29 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~ 29 (276)
.+++||||+||..+-+++=..++..
T Consensus 26 tSr~vflG~IP~~W~~~~~~~~~k~ 50 (67)
T PF15407_consen 26 TSRRVFLGPIPEIWLQDHRKSWYKS 50 (67)
T ss_pred cCceEEECCCChHHHHcCcchHHHH
Confidence 4689999999998776664444443
No 298
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=25.59 E-value=95 Score=20.56 Aligned_cols=16 Identities=6% Similarity=0.190 Sum_probs=10.5
Q ss_pred CCCHHHHHHHhhhcCC
Q 023820 118 SASWQDLKDHMRRAGD 133 (276)
Q Consensus 118 ~~~~~~l~~~f~~~g~ 133 (276)
..+.+++.+++..|..
T Consensus 61 ~Pt~EevDdfL~~y~~ 76 (85)
T PF12091_consen 61 EPTQEEVDDFLGGYDA 76 (85)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4477777777776643
No 299
>PRK11901 hypothetical protein; Reviewed
Probab=24.07 E-value=3.4e+02 Score=23.18 Aligned_cols=50 Identities=20% Similarity=0.305 Sum_probs=32.7
Q ss_pred CCHHHHHHHhhhcCCeeEEEEee---cCCCCeEEE--EeCCHHHHHHHHHhcCCce
Q 023820 119 ASWQDLKDHMRRAGDVCFSQVFR---DGSGTTGIV--DYTNYDDMKHAIKKLDDSE 169 (276)
Q Consensus 119 ~~~~~l~~~f~~~g~i~~~~~~~---~~~~~~~fv--~f~~~~~a~~a~~~l~~~~ 169 (276)
..++.|..+..+++ +..+.+.. +...+|..| .|.+.++|..|+..|-...
T Consensus 254 s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 254 SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 46778888877765 23333332 233345544 6999999999999886544
No 300
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=22.88 E-value=68 Score=26.25 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHh
Q 023820 6 SRTLYVGNLPGDIREREVEDLFY 28 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~ 28 (276)
...++|+|||.+++..-|.+++.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHH
T ss_pred CceEEEEEecccchHHHHHHHhh
Confidence 45688999999999999999987
No 301
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.74 E-value=60 Score=25.67 Aligned_cols=13 Identities=38% Similarity=0.731 Sum_probs=10.4
Q ss_pred CCCceEEEEecCH
Q 023820 43 RPPGYAFVEFEEA 55 (276)
Q Consensus 43 ~~~g~afV~f~~~ 55 (276)
-.+.||||+|.+-
T Consensus 107 ~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 107 ASRPYAFIEFDTF 119 (216)
T ss_pred cCCCeeEEehhHH
Confidence 4578999999864
No 302
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=22.53 E-value=58 Score=20.16 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=10.0
Q ss_pred HHHHHHHHhhcCCeeEE
Q 023820 20 EREVEDLFYKYGPIAHI 36 (276)
Q Consensus 20 ~~~l~~~F~~~G~v~~v 36 (276)
--||.+++.+||.+..+
T Consensus 4 lyDVqQLLK~fG~~IY~ 20 (62)
T PF06014_consen 4 LYDVQQLLKKFGIIIYV 20 (62)
T ss_dssp HHHHHHHHHTTS-----
T ss_pred HHHHHHHHHHCCEEEEe
Confidence 35788999999976543
No 303
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=22.31 E-value=2.5e+02 Score=19.14 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=16.1
Q ss_pred CCceEEEEecCHHHHHHHHH
Q 023820 44 PPGYAFVEFEEARDAEDAIR 63 (276)
Q Consensus 44 ~~g~afV~f~~~e~a~~A~~ 63 (276)
......|+|.+.+.|..++.
T Consensus 52 ptr~vviEFps~~~ar~~y~ 71 (96)
T COG5470 52 PTRNVVIEFPSLEAARDCYN 71 (96)
T ss_pred cccEEEEEcCCHHHHHHHhc
Confidence 35689999999999886654
No 304
>PHA01632 hypothetical protein
Probab=22.28 E-value=1e+02 Score=18.48 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=16.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhh
Q 023820 9 LYVGNLPGDIREREVEDLFYK 29 (276)
Q Consensus 9 l~v~nL~~~~t~~~l~~~F~~ 29 (276)
|.|..+|..-|+++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 345688999999999887654
No 305
>PF03389 MobA_MobL: MobA/MobL family; InterPro: IPR005053 This entry represents a domain found at the N terminus of MobA in Escherichia coli, and MobL in Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans), as well as in conjugal transfer protein TraA. MobA and MobL are mobilisation proteins, which are essential for specific plasmid transfer.; GO: 0009291 unidirectional conjugation; PDB: 2NS6_A.
Probab=21.18 E-value=1.7e+02 Score=23.31 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=26.3
Q ss_pred EEcCCCCCCCHHH--------HHHHHhhcCCeeEEEEecCCCCCceEEEEecCHH
Q 023820 10 YVGNLPGDIRERE--------VEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEAR 56 (276)
Q Consensus 10 ~v~nL~~~~t~~~--------l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e 56 (276)
++=.||..++.++ +.++|..+|-+.++.|+.++.....|-|-|.+..
T Consensus 71 ~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~aIH~d~~~NpHaHim~t~R~ 125 (216)
T PF03389_consen 71 FEIALPRELTLEQNIELVREFAQENFVDYGMAADVAIHDDGPRNPHAHIMFTTRP 125 (216)
T ss_dssp EEEE--TTS-HHHHHHHHHHHHHHHHTTTT--EEEEEEEETTTEEEEEEEE--B-
T ss_pred eeeeCCccCCHHHHHHHHHHHHHHHhhccceEEEEEEecCCCCCCEEEEEeecCc
Confidence 3448999988877 3344556788899988755445557777776643
No 306
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=20.45 E-value=2e+02 Score=18.57 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=16.8
Q ss_pred CceEEEEecCHHHHHHHHHhcCCC
Q 023820 45 PGYAFVEFEEARDAEDAIRGRDGY 68 (276)
Q Consensus 45 ~g~afV~f~~~e~a~~A~~~lng~ 68 (276)
.+..+|.|+..++-..|.. |.|.
T Consensus 54 ~~~~i~~~~gi~~r~~Ae~-l~g~ 76 (84)
T PF01782_consen 54 GKSLIVKFEGIDDREAAEA-LRGC 76 (84)
T ss_dssp TTEEEEEETT--SHHHHHT-TTT-
T ss_pred CCEEEEEEcCCCCHHHHHh-hCCC
Confidence 6688999999999888888 6654
Done!