Query 023820
Match_columns 276
No_of_seqs 317 out of 2287
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 13:19:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023820.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023820hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 4.3E-34 1.5E-38 226.7 16.2 164 3-186 12-180 (213)
2 3tyt_A Heterogeneous nuclear r 100.0 2.6E-33 8.8E-38 220.2 19.8 177 4-182 2-202 (205)
3 1fxl_A Paraneoplastic encephal 100.0 9.1E-33 3.1E-37 210.8 18.4 152 5-174 1-159 (167)
4 1b7f_A Protein (SXL-lethal pro 100.0 3.8E-32 1.3E-36 207.6 20.0 151 4-172 1-158 (168)
5 3md3_A Nuclear and cytoplasmic 100.0 4.1E-32 1.4E-36 206.9 19.8 158 7-184 1-164 (166)
6 3pgw_A U1-A; protein-RNA compl 100.0 1.2E-31 4.1E-36 221.7 23.2 177 3-184 6-280 (282)
7 1l3k_A Heterogeneous nuclear r 100.0 7.3E-32 2.5E-36 211.2 19.9 167 4-188 11-184 (196)
8 2adc_A Polypyrimidine tract-bi 100.0 2.8E-31 9.7E-36 212.8 21.0 175 3-184 31-225 (229)
9 2yh0_A Splicing factor U2AF 65 100.0 1.2E-30 4.2E-35 204.6 22.9 175 4-186 2-193 (198)
10 2g4b_A Splicing factor U2AF 65 100.0 4.9E-31 1.7E-35 202.2 19.8 153 4-182 2-169 (172)
11 2qfj_A FBP-interacting repress 100.0 5.8E-31 2E-35 209.2 20.5 171 5-186 27-204 (216)
12 1qm9_A Polypyrimidine tract-bi 100.0 4.3E-31 1.5E-35 207.2 18.9 165 6-173 3-187 (198)
13 3nmr_A Cugbp ELAV-like family 100.0 3.5E-31 1.2E-35 203.5 16.8 151 5-172 2-163 (175)
14 1fje_B Nucleolin RBD12, protei 100.0 1E-31 3.5E-36 206.7 12.0 162 3-186 10-173 (175)
15 2cjk_A Nuclear polyadenylated 100.0 2.1E-31 7.1E-36 203.3 11.6 158 4-186 1-165 (167)
16 3sde_A Paraspeckle component 1 100.0 1.6E-29 5.3E-34 206.6 17.8 155 4-185 20-177 (261)
17 3smz_A Protein raver-1, ribonu 100.0 3.9E-29 1.3E-33 206.9 19.9 164 4-186 93-263 (284)
18 2ghp_A U4/U6 snRNA-associated 100.0 2E-29 7E-34 209.4 17.9 166 5-186 116-290 (292)
19 3smz_A Protein raver-1, ribonu 100.0 1.6E-28 5.5E-33 203.2 20.2 151 4-186 20-174 (284)
20 2ghp_A U4/U6 snRNA-associated 100.0 9.3E-29 3.2E-33 205.4 18.2 153 4-186 39-196 (292)
21 4f25_A Polyadenylate-binding p 99.9 1.5E-24 5.1E-29 154.7 9.2 109 5-123 4-113 (115)
22 3pgw_S U1-70K; protein-RNA com 99.9 1.4E-22 4.7E-27 175.9 18.8 82 4-85 100-184 (437)
23 3lqv_A PRE-mRNA branch site pr 99.9 1.6E-22 5.5E-27 144.3 8.7 106 2-133 4-109 (115)
24 4fxv_A ELAV-like protein 1; RN 99.9 2.7E-22 9.2E-27 138.8 9.2 78 5-82 18-98 (99)
25 3pgw_S U1-70K; protein-RNA com 99.9 9.2E-22 3.1E-26 170.7 12.9 161 13-184 4-179 (437)
26 2wbr_A GW182, gawky, LD47780P; 99.9 3.6E-21 1.2E-25 126.8 11.1 74 4-80 5-78 (89)
27 1x4a_A Splicing factor, argini 99.9 3.8E-21 1.3E-25 135.8 12.0 84 2-85 18-101 (109)
28 2hvz_A Splicing factor, argini 99.9 1.6E-21 5.5E-26 135.8 9.9 100 7-116 1-100 (101)
29 1sjq_A Polypyrimidine tract-bi 99.9 1.6E-21 5.6E-26 134.6 9.7 82 2-86 12-95 (105)
30 2lxi_A RNA-binding protein 10; 99.9 8.2E-22 2.8E-26 134.2 8.0 80 6-85 1-85 (91)
31 2fy1_A RNA-binding motif prote 99.9 9.3E-21 3.2E-25 135.0 13.0 86 1-86 2-89 (116)
32 3r27_A HnRNP L, heterogeneous 99.9 4.5E-21 1.6E-25 131.0 10.5 78 3-83 18-97 (100)
33 3s8s_A Histone-lysine N-methyl 99.8 3.4E-21 1.2E-25 135.7 9.4 80 3-82 3-85 (110)
34 2a3j_A U1 small nuclear ribonu 99.8 8.7E-21 3E-25 136.7 11.2 82 3-84 26-111 (127)
35 2kn4_A Immunoglobulin G-bindin 99.8 1.6E-20 5.4E-25 141.6 13.1 143 36-187 3-150 (158)
36 1whw_A Hypothetical protein ri 99.8 2E-20 6.7E-25 129.7 12.6 83 3-85 5-90 (99)
37 2dnz_A Probable RNA-binding pr 99.8 2.2E-20 7.7E-25 128.4 12.6 83 3-85 2-87 (95)
38 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.5E-20 1.2E-24 129.4 12.9 83 3-85 12-95 (103)
39 2i2y_A Fusion protein consists 99.8 1.4E-20 4.9E-25 140.5 11.5 136 43-186 11-147 (150)
40 2cpf_A RNA binding motif prote 99.8 1.1E-20 3.7E-25 130.8 10.0 84 3-86 2-91 (98)
41 2ad9_A Polypyrimidine tract-bi 99.8 1.3E-20 4.3E-25 133.4 10.4 82 2-86 27-110 (119)
42 2lkz_A RNA-binding protein 5; 99.8 3.5E-21 1.2E-25 131.7 7.3 79 4-82 7-94 (95)
43 2x1f_A MRNA 3'-END-processing 99.8 1.3E-20 4.6E-25 129.8 10.2 80 5-84 1-83 (96)
44 1x4d_A Matrin 3; structural ge 99.8 6E-21 2E-25 131.8 8.4 79 3-84 12-93 (102)
45 2dnm_A SRP46 splicing factor; 99.8 1.5E-20 5.3E-25 131.2 10.5 82 4-85 11-95 (103)
46 2cq1_A PTB-like protein L; RRM 99.8 2.6E-20 9E-25 128.7 11.5 81 3-86 12-94 (101)
47 2dgx_A KIAA0430 protein; RRM d 99.8 1.9E-20 6.4E-25 129.0 10.7 81 4-84 7-91 (96)
48 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.5E-20 5.1E-25 131.1 10.3 83 4-86 10-95 (102)
49 2dgu_A Heterogeneous nuclear r 99.8 4.8E-20 1.6E-24 128.7 12.7 80 4-88 9-88 (103)
50 1x5s_A Cold-inducible RNA-bind 99.8 2.8E-20 9.6E-25 129.7 11.4 82 4-85 10-94 (102)
51 2d9p_A Polyadenylate-binding p 99.8 2.1E-20 7E-25 130.6 10.7 84 3-86 12-96 (103)
52 2dgs_A DAZ-associated protein 99.8 4.3E-20 1.5E-24 128.0 12.2 82 3-85 7-91 (99)
53 1x5u_A Splicing factor 3B subu 99.8 4.2E-20 1.4E-24 129.5 12.1 82 4-85 13-97 (105)
54 1nu4_A U1A RNA binding domain; 99.8 5.6E-21 1.9E-25 132.0 7.4 84 1-84 3-90 (97)
55 3md1_A Nuclear and cytoplasmic 99.8 1.5E-20 5.2E-25 125.9 9.3 78 6-83 1-81 (83)
56 1x5t_A Splicing factor 3B subu 99.8 2.8E-20 9.6E-25 128.2 10.7 82 4-85 3-88 (96)
57 2e5h_A Zinc finger CCHC-type a 99.8 2.7E-20 9.3E-25 127.7 10.6 78 4-81 14-94 (94)
58 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.7E-20 5.8E-25 126.3 9.4 79 3-81 4-85 (85)
59 1wex_A Hypothetical protein (r 99.8 3.9E-20 1.3E-24 128.6 11.3 80 3-85 12-93 (104)
60 2cq3_A RNA-binding protein 9; 99.8 7.1E-20 2.4E-24 127.8 12.6 84 3-86 12-96 (103)
61 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.5E-20 5E-25 127.2 8.8 80 4-83 4-86 (87)
62 1x4c_A Splicing factor, argini 99.8 8.5E-20 2.9E-24 128.5 13.1 79 4-86 13-96 (108)
63 2dgo_A Cytotoxic granule-assoc 99.8 6.6E-20 2.3E-24 130.6 12.6 84 4-87 13-99 (115)
64 2dgv_A HnRNP M, heterogeneous 99.8 2.7E-20 9.1E-25 127.3 10.0 83 3-85 5-88 (92)
65 2dnq_A RNA-binding protein 4B; 99.8 5.9E-20 2E-24 125.0 11.4 78 3-85 5-82 (90)
66 2dgt_A RNA-binding protein 30; 99.8 6.2E-20 2.1E-24 125.4 11.3 78 3-85 7-84 (92)
67 3beg_B Splicing factor, argini 99.8 1.3E-20 4.3E-25 134.2 8.1 70 4-77 14-83 (115)
68 2cqd_A RNA-binding region cont 99.8 1.4E-19 4.9E-24 129.1 13.6 83 3-86 14-99 (116)
69 1x4f_A Matrin 3; structural ge 99.8 3.1E-20 1.1E-24 130.0 9.8 80 3-85 22-104 (112)
70 2div_A TRNA selenocysteine ass 99.8 2.5E-20 8.5E-25 129.2 9.2 83 2-84 5-95 (99)
71 1wi8_A EIF-4B, eukaryotic tran 99.8 5.3E-20 1.8E-24 128.7 10.9 81 3-85 12-96 (104)
72 2do4_A Squamous cell carcinoma 99.8 5E-20 1.7E-24 127.9 10.6 81 4-84 15-97 (100)
73 2cph_A RNA binding motif prote 99.8 8.3E-20 2.8E-24 128.4 11.9 83 3-85 12-99 (107)
74 2cpz_A CUG triplet repeat RNA- 99.8 4.1E-20 1.4E-24 131.7 10.2 82 4-85 23-107 (115)
75 2dgp_A Bruno-like 4, RNA bindi 99.8 7.5E-20 2.6E-24 128.4 11.3 83 3-85 10-98 (106)
76 2jvr_A Nucleolar protein 3; RN 99.8 3.3E-20 1.1E-24 130.3 9.4 79 4-83 26-105 (111)
77 2dnp_A RNA-binding protein 14; 99.8 7.5E-20 2.5E-24 124.4 10.9 78 3-85 6-83 (90)
78 4a8x_A RNA-binding protein wit 99.8 4.7E-20 1.6E-24 124.9 9.9 80 4-83 2-85 (88)
79 1p27_B RNA-binding protein 8A; 99.8 3E-20 1E-24 130.4 9.1 81 4-84 21-104 (106)
80 1x4h_A RNA-binding protein 28; 99.8 9.8E-20 3.4E-24 128.9 11.8 82 4-85 13-103 (111)
81 2cq0_A Eukaryotic translation 99.8 3E-20 1E-24 129.7 8.8 82 4-85 13-97 (103)
82 1why_A Hypothetical protein ri 99.8 7.4E-20 2.5E-24 126.3 10.6 79 3-84 14-94 (97)
83 2do0_A HnRNP M, heterogeneous 99.8 1.5E-19 5.1E-24 128.6 12.5 83 3-85 12-96 (114)
84 2cqc_A Arginine/serine-rich sp 99.8 3.6E-20 1.2E-24 127.4 8.9 79 4-82 13-94 (95)
85 1s79_A Lupus LA protein; RRM, 99.8 5E-20 1.7E-24 128.1 9.1 78 4-82 9-88 (103)
86 2dnh_A Bruno-like 5, RNA bindi 99.8 9.5E-20 3.2E-24 127.7 10.6 82 4-85 13-99 (105)
87 2ywk_A Putative RNA-binding pr 99.8 4.7E-20 1.6E-24 126.8 8.5 80 3-82 13-94 (95)
88 1x4g_A Nucleolysin TIAR; struc 99.8 1.6E-19 5.4E-24 127.3 11.5 79 4-85 23-101 (109)
89 2cq2_A Hypothetical protein LO 99.8 9.8E-20 3.4E-24 127.5 10.1 81 2-85 21-108 (114)
90 2kxn_B Transformer-2 protein h 99.8 5.3E-20 1.8E-24 133.5 9.0 82 3-84 43-127 (129)
91 2dhg_A TRNA selenocysteine ass 99.8 1.2E-19 4E-24 127.0 10.2 83 3-85 6-92 (104)
92 2cpj_A Non-POU domain-containi 99.8 1.5E-19 5E-24 125.3 10.6 78 4-84 13-90 (99)
93 3p5t_L Cleavage and polyadenyl 99.8 1.2E-20 4.1E-25 128.4 5.0 78 7-84 2-84 (90)
94 2dng_A Eukaryotic translation 99.8 1.4E-19 4.6E-24 126.4 10.4 81 3-85 12-95 (103)
95 2la6_A RNA-binding protein FUS 99.8 8.3E-20 2.8E-24 126.5 9.2 79 3-81 10-99 (99)
96 1whx_A Hypothetical protein ri 99.8 7.3E-20 2.5E-24 129.3 9.1 78 4-84 8-85 (111)
97 2xnq_A Nuclear polyadenylated 99.8 1.6E-19 5.4E-24 124.4 10.5 76 3-83 19-95 (97)
98 2cpi_A CCR4-NOT transcription 99.8 3.9E-20 1.3E-24 130.9 7.6 81 4-84 13-102 (111)
99 1oo0_B CG8781-PA, drosophila Y 99.8 9.1E-20 3.1E-24 128.9 9.4 81 4-84 24-107 (110)
100 2jrs_A RNA-binding protein 39; 99.8 7.6E-20 2.6E-24 128.6 8.9 81 3-83 23-106 (108)
101 2cpe_A RNA-binding protein EWS 99.8 1.4E-19 4.7E-24 128.6 10.3 83 3-85 12-105 (113)
102 2ytc_A PRE-mRNA-splicing facto 99.8 1E-19 3.4E-24 122.4 8.9 76 3-81 9-85 (85)
103 3ulh_A THO complex subunit 4; 99.8 1E-19 3.6E-24 127.9 9.3 78 4-81 27-106 (107)
104 2khc_A Testis-specific RNP-typ 99.8 8E-20 2.7E-24 130.8 8.8 79 3-81 37-118 (118)
105 2cpx_A Hypothetical protein FL 99.8 1.6E-19 5.5E-24 128.6 10.3 82 4-86 23-108 (115)
106 3ex7_B RNA-binding protein 8A; 99.8 1.3E-19 4.3E-24 131.3 9.8 83 4-86 20-105 (126)
107 2cpd_A Apobec-1 stimulating pr 99.8 3.5E-19 1.2E-23 123.4 11.5 77 4-85 13-91 (99)
108 3ns6_A Eukaryotic translation 99.8 3.4E-20 1.2E-24 128.6 6.3 79 4-82 4-92 (100)
109 2kvi_A Nuclear polyadenylated 99.8 1.1E-19 3.8E-24 125.1 8.7 78 3-85 7-85 (96)
110 1u6f_A Tcubp1, RNA-binding pro 99.8 2.8E-19 9.7E-24 131.7 11.5 83 4-86 40-125 (139)
111 2nlw_A Eukaryotic translation 99.8 1.6E-19 5.6E-24 126.3 9.6 80 4-83 13-100 (105)
112 3s7r_A Heterogeneous nuclear r 99.8 2E-19 6.9E-24 121.5 9.7 77 3-80 8-87 (87)
113 2fc9_A NCL protein; structure 99.8 1.7E-19 6E-24 125.4 9.6 81 4-85 13-93 (101)
114 2jvo_A Nucleolar protein 3; nu 99.8 1.7E-19 5.7E-24 126.8 9.5 77 3-84 28-104 (108)
115 2err_A Ataxin-2-binding protei 99.8 1.5E-19 5.2E-24 127.3 9.2 80 4-83 27-107 (109)
116 3ucg_A Polyadenylate-binding p 99.8 2.7E-19 9.1E-24 121.4 10.0 78 5-83 5-85 (89)
117 2dis_A Unnamed protein product 99.8 6.7E-19 2.3E-23 124.2 12.4 83 3-85 5-94 (109)
118 2cqh_A IGF-II mRNA-binding pro 99.8 1.9E-19 6.4E-24 123.2 9.0 79 3-85 5-85 (93)
119 2rs2_A Musashi-1, RNA-binding 99.8 4.2E-19 1.4E-23 125.0 11.0 81 4-85 23-106 (109)
120 2kt5_A RNA and export factor-b 99.8 5.5E-19 1.9E-23 127.5 11.7 82 4-85 33-116 (124)
121 2e5j_A Methenyltetrahydrofolat 99.8 2E-19 6.9E-24 124.0 9.0 79 4-84 17-95 (97)
122 2krb_A Eukaryotic translation 99.8 1.1E-19 3.8E-24 121.0 7.2 72 6-77 1-80 (81)
123 2dh8_A DAZ-associated protein 99.8 1.6E-19 5.3E-24 126.5 8.4 82 3-85 13-97 (105)
124 1h2v_Z 20 kDa nuclear CAP bind 99.8 4E-19 1.4E-23 133.5 10.7 82 4-85 37-121 (156)
125 2la4_A Nuclear and cytoplasmic 99.8 1.6E-19 5.6E-24 125.5 8.0 76 4-82 25-100 (101)
126 1x4e_A RNA binding motif, sing 99.8 4.2E-20 1.4E-24 124.3 4.6 79 3-81 2-83 (85)
127 2m2b_A RNA-binding protein 10; 99.8 3E-19 1E-23 130.1 9.5 82 3-85 20-110 (131)
128 3n9u_C Cleavage and polyadenyl 99.8 2.8E-19 9.6E-24 133.8 9.3 78 5-82 54-136 (156)
129 1fjc_A Nucleolin RBD2, protein 99.8 1.1E-19 3.8E-24 125.1 6.4 79 4-84 14-92 (96)
130 2mss_A Protein (musashi1); RNA 99.8 2E-19 7E-24 117.9 7.4 72 8-80 1-75 (75)
131 2cqg_A TDP-43, TAR DNA-binding 99.8 1.2E-18 4E-23 121.6 11.4 81 3-85 12-95 (103)
132 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2E-19 7E-24 124.7 7.5 78 4-83 17-98 (100)
133 1p1t_A Cleavage stimulation fa 99.8 2.9E-19 9.9E-24 124.9 8.4 81 4-84 6-89 (104)
134 2lea_A Serine/arginine-rich sp 99.8 2.9E-19 9.8E-24 130.7 8.6 82 4-85 45-129 (135)
135 1wf1_A RNA-binding protein RAL 99.8 5.2E-19 1.8E-23 124.9 9.6 75 5-84 26-101 (110)
136 2kn4_A Immunoglobulin G-bindin 99.8 1.1E-18 3.9E-23 131.3 12.1 82 4-85 68-152 (158)
137 2diu_A KIAA0430 protein; struc 99.8 9.9E-19 3.4E-23 116.2 10.1 76 4-86 6-87 (96)
138 2cqp_A RNA-binding protein 12; 99.8 1.4E-19 4.8E-24 125.1 6.3 80 4-83 13-95 (98)
139 2dgw_A Probable RNA-binding pr 99.8 8.3E-19 2.8E-23 119.5 10.0 80 3-84 7-88 (91)
140 1x4b_A Heterogeneous nuclear r 99.8 1.1E-18 3.6E-23 124.5 10.9 80 5-85 26-108 (116)
141 2ki2_A SS-DNA binding protein 99.8 1E-19 3.6E-24 123.7 5.2 78 7-85 2-82 (90)
142 1uaw_A Mouse-musashi-1; RNP-ty 99.8 2.7E-19 9.3E-24 118.0 7.0 73 7-80 1-76 (77)
143 3egn_A RNA-binding protein 40; 99.8 2.4E-19 8.2E-24 132.8 7.5 82 3-84 42-131 (143)
144 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 7.8E-19 2.7E-23 129.5 10.1 77 4-80 61-140 (140)
145 2cq4_A RNA binding motif prote 99.8 5.4E-19 1.9E-23 125.6 8.9 78 5-83 24-104 (114)
146 2fc8_A NCL protein; structure 99.8 5.5E-19 1.9E-23 123.1 8.7 83 3-85 12-94 (102)
147 2ek1_A RNA-binding protein 12; 99.8 1.2E-19 4.2E-24 124.7 5.1 78 4-81 13-93 (95)
148 1x5p_A Negative elongation fac 99.8 2.6E-18 9E-23 118.4 11.8 77 4-85 13-89 (97)
149 1wg5_A Heterogeneous nuclear r 99.8 1.6E-18 5.6E-23 121.0 10.8 79 4-83 13-94 (104)
150 1wg1_A KIAA1579 protein, homol 99.8 4.3E-19 1.5E-23 120.1 7.5 77 3-83 2-78 (88)
151 1rk8_A CG8781-PA, CG8781-PA pr 99.8 7E-19 2.4E-23 133.4 9.4 82 4-85 70-154 (165)
152 2i2y_A Fusion protein consists 99.8 1E-18 3.5E-23 130.4 10.1 78 4-83 71-148 (150)
153 2cpy_A RNA-binding protein 12; 99.8 7.4E-19 2.5E-23 124.8 8.2 79 4-83 13-94 (114)
154 2e5g_A U6 snRNA-specific termi 99.8 2.3E-18 7.9E-23 118.0 10.2 78 4-84 6-83 (94)
155 2jwn_A Embryonic polyadenylate 99.8 1.7E-18 5.9E-23 124.9 10.0 78 6-84 36-116 (124)
156 1x5o_A RNA binding motif, sing 99.8 1.3E-18 4.3E-23 123.8 9.1 79 4-82 23-111 (114)
157 1iqt_A AUF1, heterogeneous nuc 99.8 6E-19 2E-23 115.7 6.7 72 8-80 1-75 (75)
158 2e44_A Insulin-like growth fac 99.8 2.2E-18 7.5E-23 118.6 9.8 79 4-83 13-92 (96)
159 1fj7_A Nucleolin RBD1, protein 99.8 2.1E-19 7.1E-24 125.0 4.5 80 4-84 15-96 (101)
160 1sjr_A Polypyrimidine tract-bi 99.8 5.1E-18 1.8E-22 126.0 12.2 78 7-85 47-126 (164)
161 1wez_A HnRNP H', FTP-3, hetero 99.8 1.5E-18 5.3E-23 120.5 8.9 79 4-84 13-93 (102)
162 2f3j_A RNA and export factor b 99.8 1.9E-18 6.5E-23 132.1 10.1 80 4-83 86-167 (177)
163 2hgl_A HNRPF protein, heteroge 99.8 1.5E-18 5.2E-23 126.3 9.0 77 4-81 42-123 (136)
164 2db1_A Heterogeneous nuclear r 99.8 8.5E-19 2.9E-23 125.2 7.0 77 4-81 15-96 (118)
165 1wel_A RNA-binding protein 12; 99.8 1.8E-18 6.1E-23 124.8 7.5 78 4-82 23-103 (124)
166 3zzy_A Polypyrimidine tract-bi 99.8 9.1E-18 3.1E-22 120.2 11.0 76 7-84 29-107 (130)
167 3q2s_C Cleavage and polyadenyl 99.8 2.1E-18 7.2E-23 137.3 8.5 78 5-82 67-149 (229)
168 2hzc_A Splicing factor U2AF 65 99.7 3.9E-18 1.3E-22 115.1 8.3 73 3-79 3-86 (87)
169 2lmi_A GRSF-1, G-rich sequence 99.7 1.7E-18 5.9E-23 121.5 6.3 78 3-81 8-90 (107)
170 2e5i_A Heterogeneous nuclear r 99.7 1E-17 3.5E-22 119.5 10.3 77 5-84 22-103 (124)
171 2dnn_A RNA-binding protein 12; 99.7 7.4E-18 2.5E-22 118.0 9.3 74 6-81 16-91 (109)
172 3d2w_A TAR DNA-binding protein 99.7 8.3E-18 2.8E-22 113.8 9.0 75 3-83 8-84 (89)
173 1wf0_A TDP-43, TAR DNA-binding 99.7 5E-18 1.7E-22 114.8 7.7 79 3-85 2-80 (88)
174 1x4c_A Splicing factor, argini 99.7 1.3E-16 4.5E-21 112.0 14.7 78 106-186 14-92 (108)
175 2lcw_A RNA-binding protein FUS 99.6 1.9E-19 6.6E-24 128.4 0.0 83 3-85 4-97 (116)
176 2hgn_A Heterogeneous nuclear r 99.7 2.6E-18 8.8E-23 125.5 5.9 79 4-84 44-124 (139)
177 2bz2_A Negative elongation fac 99.7 1.5E-17 5.1E-22 119.1 9.5 76 4-84 37-112 (121)
178 2dha_A FLJ20171 protein; RRM d 99.7 4.3E-18 1.5E-22 121.8 6.6 77 4-81 21-103 (123)
179 2pe8_A Splicing factor 45; RRM 99.7 2E-17 6.8E-22 115.1 9.4 81 2-82 4-93 (105)
180 2hgm_A HNRPF protein, heteroge 99.7 1.1E-17 3.9E-22 119.8 8.0 76 4-81 40-119 (126)
181 2xs2_A Deleted in azoospermia- 99.7 5.9E-18 2E-22 117.8 5.6 79 4-84 7-87 (102)
182 3beg_B Splicing factor, argini 99.7 1.5E-17 5.2E-22 118.1 7.6 77 106-185 15-92 (115)
183 2dnl_A Cytoplasmic polyadenyla 99.7 8.6E-17 2.9E-21 114.1 10.9 75 3-80 5-85 (114)
184 3u1l_A PRE-mRNA-splicing facto 99.7 2.1E-17 7.1E-22 130.9 7.7 79 4-85 132-231 (240)
185 4f02_A Polyadenylate-binding p 99.7 3.7E-17 1.3E-21 129.1 9.0 78 5-82 102-180 (213)
186 3md3_A Nuclear and cytoplasmic 99.7 5.1E-17 1.7E-21 123.0 9.3 78 4-81 85-165 (166)
187 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.1E-16 3.9E-21 121.1 11.0 133 50-186 11-151 (165)
188 2qfj_A FBP-interacting repress 99.7 8.4E-17 2.9E-21 127.2 10.6 82 4-85 123-207 (216)
189 2dit_A HIV TAT specific factor 99.7 1.9E-16 6.6E-21 111.9 10.9 81 3-84 12-103 (112)
190 2lea_A Serine/arginine-rich sp 99.7 7.2E-17 2.5E-21 117.9 8.3 118 46-186 5-126 (135)
191 2j8a_A Histone-lysine N-methyl 99.7 6.2E-17 2.1E-21 113.7 7.2 75 7-81 3-94 (136)
192 1fje_B Nucleolin RBD12, protei 99.7 6.6E-17 2.2E-21 123.7 7.9 78 4-83 97-174 (175)
193 2cjk_A Nuclear polyadenylated 99.7 6.7E-17 2.3E-21 122.6 7.7 78 5-83 86-166 (167)
194 2g4b_A Splicing factor U2AF 65 99.7 1.1E-16 3.7E-21 122.1 8.0 76 5-80 93-171 (172)
195 2yh0_A Splicing factor U2AF 65 99.7 1.8E-16 6.1E-21 123.6 9.2 81 4-84 112-195 (198)
196 2jvr_A Nucleolar protein 3; RN 99.7 3.2E-16 1.1E-20 109.9 8.8 77 106-186 27-104 (111)
197 1b7f_A Protein (SXL-lethal pro 99.7 3.1E-16 1.1E-20 119.0 9.3 77 4-80 87-168 (168)
198 3nmr_A Cugbp ELAV-like family 99.7 2.8E-16 9.7E-21 120.0 8.8 76 5-80 94-174 (175)
199 4fxv_A ELAV-like protein 1; RN 99.7 1.1E-15 3.7E-20 105.4 10.8 76 106-185 18-97 (99)
200 1l3k_A Heterogeneous nuclear r 99.7 3.3E-16 1.1E-20 121.9 9.3 81 5-86 103-186 (196)
201 2fy1_A RNA-binding motif prote 99.7 3.1E-15 1.1E-19 106.3 13.3 78 105-186 5-85 (116)
202 1sjq_A Polypyrimidine tract-bi 99.7 1.3E-15 4.5E-20 105.0 10.8 79 103-187 12-92 (105)
203 2voo_A Lupus LA protein; RNA-b 99.6 5.1E-16 1.8E-20 120.3 9.5 77 6-83 109-187 (193)
204 3v4m_A Splicing factor U2AF 65 99.6 5.5E-16 1.9E-20 107.8 8.4 79 3-81 2-95 (105)
205 3pgw_A U1-A; protein-RNA compl 99.6 8.4E-16 2.9E-20 126.6 10.6 75 5-81 206-281 (282)
206 4f25_A Polyadenylate-binding p 99.6 1.5E-15 5E-20 107.9 10.2 76 107-186 5-82 (115)
207 1fxl_A Paraneoplastic encephal 99.6 7.2E-16 2.5E-20 116.7 9.0 76 5-80 87-167 (167)
208 2wbr_A GW182, gawky, LD47780P; 99.6 2.3E-15 8E-20 99.1 9.7 72 107-184 7-78 (89)
209 1qm9_A Polypyrimidine tract-bi 99.6 9.5E-16 3.2E-20 119.6 9.0 77 4-82 118-196 (198)
210 2d9p_A Polyadenylate-binding p 99.6 6E-15 2E-19 102.6 12.1 81 103-187 11-93 (103)
211 1whw_A Hypothetical protein ri 99.6 7.5E-15 2.6E-19 101.3 12.3 81 105-189 6-90 (99)
212 2cqb_A Peptidyl-prolyl CIS-tra 99.6 5.4E-15 1.9E-19 102.6 11.5 82 103-188 8-93 (102)
213 2cq3_A RNA-binding protein 9; 99.6 1.9E-14 6.4E-19 100.1 14.2 80 104-187 12-93 (103)
214 1x4a_A Splicing factor, argini 99.6 1.5E-14 5E-19 101.7 13.7 80 104-187 19-99 (109)
215 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.7E-14 5.8E-19 100.3 13.9 80 104-187 12-93 (103)
216 3s8s_A Histone-lysine N-methyl 99.6 5.8E-15 2E-19 103.7 11.4 77 105-185 4-84 (110)
217 2adc_A Polypyrimidine tract-bi 99.6 2.3E-15 7.8E-20 120.2 10.5 77 4-82 149-227 (229)
218 3ex7_B RNA-binding protein 8A; 99.6 2.9E-15 9.9E-20 108.2 9.8 77 106-186 21-101 (126)
219 2d9o_A DNAJ (HSP40) homolog, s 99.6 1E-14 3.5E-19 100.1 11.9 77 5-85 9-92 (100)
220 1x5s_A Cold-inducible RNA-bind 99.6 6.7E-15 2.3E-19 102.2 11.1 80 103-186 8-91 (102)
221 1x4d_A Matrin 3; structural ge 99.6 4.8E-15 1.6E-19 102.1 10.1 76 105-186 13-91 (102)
222 3tyt_A Heterogeneous nuclear r 99.6 1.1E-15 3.9E-20 119.6 7.9 77 4-80 121-204 (205)
223 2dnm_A SRP46 splicing factor; 99.6 7E-15 2.4E-19 102.3 11.0 79 105-187 11-93 (103)
224 2dnz_A Probable RNA-binding pr 99.6 1.1E-14 3.6E-19 99.8 11.7 78 106-187 4-85 (95)
225 2dnq_A RNA-binding protein 4B; 99.6 1.1E-14 3.8E-19 98.6 11.6 75 105-187 6-80 (90)
226 4a8x_A RNA-binding protein wit 99.6 6.2E-15 2.1E-19 99.4 10.3 77 106-186 3-84 (88)
227 2cpf_A RNA binding motif prote 99.6 1.1E-14 3.9E-19 100.2 11.7 78 106-187 4-88 (98)
228 2cq1_A PTB-like protein L; RRM 99.6 2.5E-14 8.6E-19 98.6 13.2 78 104-187 12-91 (101)
229 2dgs_A DAZ-associated protein 99.6 1.5E-14 5.1E-19 99.8 12.1 78 105-187 8-89 (99)
230 2dgx_A KIAA0430 protein; RRM d 99.6 9.7E-15 3.3E-19 100.1 11.0 78 106-187 8-90 (96)
231 3r27_A HnRNP L, heterogeneous 99.6 8.7E-15 3E-19 99.9 10.5 77 104-186 18-96 (100)
232 2dgu_A Heterogeneous nuclear r 99.6 3.2E-14 1.1E-18 98.8 13.8 75 105-187 9-83 (103)
233 1x5u_A Splicing factor 3B subu 99.6 2E-14 7E-19 100.3 12.6 80 104-187 12-95 (105)
234 2e5h_A Zinc finger CCHC-type a 99.6 2.3E-14 7.8E-19 97.9 12.5 77 103-183 12-92 (94)
235 2dnp_A RNA-binding protein 14; 99.6 1.6E-14 5.5E-19 97.8 11.5 76 104-187 6-81 (90)
236 2cq0_A Eukaryotic translation 99.6 2.5E-14 8.5E-19 99.4 12.7 80 104-187 12-95 (103)
237 2cph_A RNA binding motif prote 99.6 2.7E-14 9.2E-19 100.0 12.8 80 104-187 12-97 (107)
238 1why_A Hypothetical protein ri 99.6 2.1E-14 7.1E-19 98.7 11.9 77 104-186 14-92 (97)
239 1x4h_A RNA-binding protein 28; 99.6 3.5E-14 1.2E-18 100.1 13.4 80 104-187 12-101 (111)
240 2cpz_A CUG triplet repeat RNA- 99.6 5.4E-14 1.8E-18 99.8 14.3 80 105-188 23-106 (115)
241 1wf1_A RNA-binding protein RAL 99.6 9.4E-15 3.2E-19 102.9 10.2 73 106-186 26-99 (110)
242 2e5j_A Methenyltetrahydrofolat 99.6 1.4E-14 4.9E-19 99.5 10.9 77 105-186 17-93 (97)
243 2div_A TRNA selenocysteine ass 99.6 2.2E-14 7.5E-19 99.0 11.9 85 103-187 5-94 (99)
244 3tht_A Alkylated DNA repair pr 99.6 3.8E-15 1.3E-19 124.2 9.4 77 2-81 14-97 (345)
245 2dgo_A Cytotoxic granule-assoc 99.6 1E-13 3.5E-18 98.3 15.4 79 105-187 13-95 (115)
246 2dgt_A RNA-binding protein 30; 99.6 2.8E-14 9.6E-19 97.0 11.9 76 104-187 7-82 (92)
247 2do0_A HnRNP M, heterogeneous 99.6 9.7E-14 3.3E-18 98.3 15.1 79 104-186 12-93 (114)
248 1wi8_A EIF-4B, eukaryotic tran 99.6 3.5E-14 1.2E-18 98.9 12.5 77 106-188 14-95 (104)
249 1x4g_A Nucleolysin TIAR; struc 99.6 2.3E-14 7.7E-19 100.7 11.6 77 106-188 24-100 (109)
250 2lxi_A RNA-binding protein 10; 99.6 3.9E-15 1.3E-19 101.0 7.3 76 108-187 2-83 (91)
251 2dng_A Eukaryotic translation 99.6 3.6E-14 1.2E-18 98.7 12.3 77 105-187 13-93 (103)
252 2cqc_A Arginine/serine-rich sp 99.6 4.3E-14 1.5E-18 96.7 12.4 79 103-185 11-93 (95)
253 2kxn_B Transformer-2 protein h 99.6 2E-14 7E-19 103.9 11.1 81 103-187 42-126 (129)
254 1u6f_A Tcubp1, RNA-binding pro 99.6 8.4E-14 2.9E-18 102.2 14.5 80 104-187 39-122 (139)
255 2dgp_A Bruno-like 4, RNA bindi 99.6 2.4E-14 8E-19 100.1 10.8 79 105-187 11-96 (106)
256 2ad9_A Polypyrimidine tract-bi 99.6 1.8E-14 6.2E-19 101.8 10.2 77 105-187 29-107 (119)
257 2cpi_A CCR4-NOT transcription 99.6 2.8E-14 9.7E-19 100.5 11.1 80 104-187 12-101 (111)
258 1x5t_A Splicing factor 3B subu 99.6 2.5E-14 8.7E-19 98.1 10.6 78 106-187 4-86 (96)
259 2x1f_A MRNA 3'-END-processing 99.6 2.4E-14 8.3E-19 98.1 10.4 77 107-187 2-82 (96)
260 2lkz_A RNA-binding protein 5; 99.6 9.6E-15 3.3E-19 99.5 8.2 78 104-185 6-93 (95)
261 2cqh_A IGF-II mRNA-binding pro 99.6 1.9E-14 6.4E-19 98.1 9.6 77 104-187 5-83 (93)
262 1wex_A Hypothetical protein (r 99.6 4.8E-14 1.7E-18 97.7 11.8 76 105-186 13-90 (104)
263 2hvz_A Splicing factor, argini 99.6 1.3E-14 4.4E-19 100.6 8.9 74 109-187 2-75 (101)
264 3md1_A Nuclear and cytoplasmic 99.6 2.5E-14 8.6E-19 95.3 10.0 74 109-186 3-80 (83)
265 3bs9_A Nucleolysin TIA-1 isofo 99.6 2.9E-14 1E-18 95.9 10.3 76 106-185 5-84 (87)
266 2cpx_A Hypothetical protein FL 99.6 6.7E-14 2.3E-18 99.3 12.7 80 105-188 23-106 (115)
267 2dgv_A HnRNP M, heterogeneous 99.6 2.5E-14 8.6E-19 97.3 9.8 78 105-186 6-85 (92)
268 2jvo_A Nucleolar protein 3; nu 99.6 2.5E-14 8.7E-19 100.1 10.1 76 104-187 28-103 (108)
269 3mdf_A Peptidyl-prolyl CIS-tra 99.6 3.9E-14 1.3E-18 94.8 10.5 75 105-183 5-83 (85)
270 1jmt_A Splicing factor U2AF 35 99.6 1.1E-15 3.7E-20 106.2 2.9 69 12-80 21-103 (104)
271 2cpj_A Non-POU domain-containi 99.6 5.6E-14 1.9E-18 96.9 11.5 77 105-187 13-89 (99)
272 2do4_A Squamous cell carcinoma 99.6 1.4E-13 4.7E-18 95.1 13.5 80 104-187 14-96 (100)
273 3ue2_A Poly(U)-binding-splicin 99.6 9.6E-15 3.3E-19 103.5 7.7 78 4-81 18-107 (118)
274 2cpe_A RNA-binding protein EWS 99.6 7.9E-14 2.7E-18 98.6 12.4 79 105-187 13-103 (113)
275 2fc9_A NCL protein; structure 99.6 4E-14 1.4E-18 98.0 10.7 80 104-187 12-91 (101)
276 2la6_A RNA-binding protein FUS 99.6 3.5E-14 1.2E-18 98.0 10.3 71 103-173 9-91 (99)
277 2cpd_A Apobec-1 stimulating pr 99.6 1.4E-13 4.7E-18 94.9 13.3 75 105-187 13-89 (99)
278 2ytc_A PRE-mRNA-splicing facto 99.6 6.2E-14 2.1E-18 93.8 11.2 73 105-183 10-83 (85)
279 3s6e_A RNA-binding protein 39; 99.5 2.2E-14 7.5E-19 100.9 9.1 78 3-81 4-91 (114)
280 2khc_A Testis-specific RNP-typ 99.5 9.2E-14 3.1E-18 99.0 12.1 75 105-183 38-116 (118)
281 2ywk_A Putative RNA-binding pr 99.5 3.7E-14 1.3E-18 97.1 9.6 76 105-184 14-92 (95)
282 1x4e_A RNA binding motif, sing 99.5 1.3E-14 4.5E-19 97.1 7.0 68 106-173 4-75 (85)
283 2dhg_A TRNA selenocysteine ass 99.5 1.9E-13 6.4E-18 95.1 13.1 79 104-186 6-89 (104)
284 1p27_B RNA-binding protein 8A; 99.5 3.9E-14 1.3E-18 99.0 9.6 76 106-185 22-101 (106)
285 2xnq_A Nuclear polyadenylated 99.5 7.2E-14 2.5E-18 95.9 10.7 76 103-186 18-94 (97)
286 2la4_A Nuclear and cytoplasmic 99.5 5.6E-14 1.9E-18 97.3 10.2 74 106-185 26-99 (101)
287 2dnh_A Bruno-like 5, RNA bindi 99.5 1.4E-13 4.6E-18 96.0 12.2 82 105-187 13-97 (105)
288 2err_A Ataxin-2-binding protei 99.5 4.8E-14 1.6E-18 99.0 9.9 79 104-186 26-106 (109)
289 1oo0_B CG8781-PA, drosophila Y 99.5 6.1E-14 2.1E-18 98.7 10.2 77 106-186 25-105 (110)
290 1x4f_A Matrin 3; structural ge 99.5 6.9E-14 2.4E-18 97.7 10.0 77 104-186 22-101 (112)
291 2e5g_A U6 snRNA-specific termi 99.5 2.2E-13 7.4E-18 93.0 12.3 74 106-186 7-81 (94)
292 2dh8_A DAZ-associated protein 99.5 2.1E-13 7.2E-18 95.0 12.5 80 104-188 13-96 (105)
293 2cqd_A RNA-binding region cont 99.5 4.6E-13 1.6E-17 95.1 14.5 78 104-186 14-95 (116)
294 3ulh_A THO complex subunit 4; 99.5 6.3E-14 2.1E-18 98.1 9.7 74 105-182 27-103 (107)
295 1sjr_A Polypyrimidine tract-bi 99.5 6.1E-14 2.1E-18 104.1 10.0 76 109-186 48-123 (164)
296 2jrs_A RNA-binding protein 39; 99.5 1.9E-13 6.6E-18 95.7 12.1 78 105-186 24-105 (108)
297 2kvi_A Nuclear polyadenylated 99.5 3.8E-14 1.3E-18 97.1 8.3 74 105-186 8-82 (96)
298 2e44_A Insulin-like growth fac 99.5 9E-14 3.1E-18 95.3 10.1 77 106-186 14-91 (96)
299 3sde_A Paraspeckle component 1 99.5 3.3E-14 1.1E-18 115.7 9.0 81 4-84 94-180 (261)
300 2cqp_A RNA-binding protein 12; 99.5 9.4E-14 3.2E-18 95.6 10.0 77 106-186 14-94 (98)
301 2cqg_A TDP-43, TAR DNA-binding 99.5 5.2E-13 1.8E-17 92.7 13.8 78 104-187 12-93 (103)
302 1x5p_A Negative elongation fac 99.5 5.3E-13 1.8E-17 91.6 13.6 76 105-188 13-88 (97)
303 2m2b_A RNA-binding protein 10; 99.5 8.9E-14 3E-18 101.0 10.2 77 105-186 21-107 (131)
304 3ns6_A Eukaryotic translation 99.5 3.9E-14 1.3E-18 97.8 7.7 70 106-175 5-85 (100)
305 1h2v_Z 20 kDa nuclear CAP bind 99.5 2.4E-13 8.1E-18 101.8 12.5 78 105-186 37-118 (156)
306 3s7r_A Heterogeneous nuclear r 99.5 1.5E-13 5E-18 92.4 10.3 74 104-182 8-85 (87)
307 2kt5_A RNA and export factor-b 99.5 4.3E-13 1.5E-17 96.4 13.3 78 105-186 33-113 (124)
308 1s79_A Lupus LA protein; RRM, 99.5 1.6E-13 5.4E-18 95.1 10.6 71 106-177 10-83 (103)
309 2a3j_A U1 small nuclear ribonu 99.5 1.2E-13 4E-18 99.3 10.1 76 106-185 28-108 (127)
310 3ucg_A Polyadenylate-binding p 99.5 1.5E-13 5.1E-18 92.8 10.1 74 108-186 7-84 (89)
311 2e5i_A Heterogeneous nuclear r 99.5 6.9E-13 2.4E-17 94.4 14.0 73 110-186 28-101 (124)
312 3p5t_L Cleavage and polyadenyl 99.5 3.9E-14 1.3E-18 95.9 7.2 74 109-186 3-82 (90)
313 2krb_A Eukaryotic translation 99.5 4.2E-14 1.4E-18 93.7 6.9 66 108-173 2-75 (81)
314 3lqv_A PRE-mRNA branch site pr 99.5 1.6E-13 5.3E-18 97.4 10.2 78 104-185 5-83 (115)
315 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 3.4E-13 1.2E-17 99.1 12.2 76 103-182 59-138 (140)
316 2rs2_A Musashi-1, RNA-binding 99.5 2.4E-13 8.3E-18 95.3 10.8 79 104-187 22-104 (109)
317 1x4b_A Heterogeneous nuclear r 99.5 2.5E-13 8.6E-18 96.4 10.8 76 107-187 27-106 (116)
318 2nlw_A Eukaryotic translation 99.5 1.6E-13 5.6E-18 95.6 9.6 78 106-186 14-99 (105)
319 2cq2_A Hypothetical protein LO 99.5 1.1E-13 3.9E-18 96.7 8.6 64 105-170 23-88 (114)
320 2dgw_A Probable RNA-binding pr 99.5 3.8E-13 1.3E-17 91.1 11.0 76 105-186 8-86 (91)
321 1wez_A HnRNP H', FTP-3, hetero 99.5 2.8E-13 9.6E-18 93.8 10.3 70 103-174 11-83 (102)
322 2hgn_A Heterogeneous nuclear r 99.5 3.3E-14 1.1E-18 103.7 5.5 117 46-185 2-121 (139)
323 2fc8_A NCL protein; structure 99.5 3.5E-13 1.2E-17 93.4 10.5 79 103-188 11-93 (102)
324 3zzy_A Polypyrimidine tract-bi 99.5 2.9E-13 9.8E-18 96.8 10.2 74 110-186 31-105 (130)
325 1nu4_A U1A RNA binding domain; 99.5 1.4E-13 4.9E-18 94.4 8.2 78 105-186 6-88 (97)
326 2ek1_A RNA-binding protein 12; 99.5 1.1E-13 3.7E-18 94.7 7.6 74 106-183 14-91 (95)
327 2cq4_A RNA binding motif prote 99.5 8.8E-14 3E-18 98.5 7.3 73 108-185 26-102 (114)
328 1whx_A Hypothetical protein ri 99.5 1.3E-13 4.5E-18 97.0 8.0 72 107-184 10-81 (111)
329 2j76_E EIF-4B, EIF4B, eukaryot 99.5 7.6E-14 2.6E-18 96.4 6.7 75 105-185 17-96 (100)
330 1wg5_A Heterogeneous nuclear r 99.5 5.5E-13 1.9E-17 92.7 11.1 75 105-184 13-91 (104)
331 2diu_A KIAA0430 protein; struc 99.5 2.9E-13 1E-17 89.9 9.1 72 106-187 7-84 (96)
332 1fjc_A Nucleolin RBD2, protein 99.5 1.3E-13 4.4E-18 94.5 7.6 77 105-186 14-90 (96)
333 2cpy_A RNA-binding protein 12; 99.5 2.7E-13 9.2E-18 95.9 9.5 78 103-185 11-92 (114)
334 3n9u_C Cleavage and polyadenyl 99.5 4.1E-13 1.4E-17 100.2 10.9 75 106-184 54-134 (156)
335 2hzc_A Splicing factor U2AF 65 99.5 2.5E-13 8.5E-18 91.3 8.5 66 105-173 4-80 (87)
336 1p1t_A Cleavage stimulation fa 99.5 3.7E-13 1.3E-17 93.6 9.7 76 107-186 8-87 (104)
337 2mss_A Protein (musashi1); RNA 99.5 1.3E-13 4.6E-18 89.9 6.9 65 109-174 1-69 (75)
338 1wg1_A KIAA1579 protein, homol 99.5 2.7E-13 9.3E-18 91.3 8.4 72 107-185 5-76 (88)
339 2dis_A Unnamed protein product 99.5 3.9E-13 1.3E-17 94.3 9.5 78 106-187 7-92 (109)
340 2jwn_A Embryonic polyadenylate 99.5 6.1E-13 2.1E-17 95.6 10.7 75 107-186 36-114 (124)
341 2dnn_A RNA-binding protein 12; 99.5 3.7E-13 1.3E-17 94.0 9.2 71 108-184 17-90 (109)
342 1x5o_A RNA binding motif, sing 99.5 1.5E-12 5.1E-17 92.1 12.5 81 105-185 23-110 (114)
343 1uaw_A Mouse-musashi-1; RNP-ty 99.4 1.8E-13 6.3E-18 89.7 6.6 65 109-174 2-70 (77)
344 2db1_A Heterogeneous nuclear r 99.4 6.6E-13 2.3E-17 94.5 9.5 74 106-184 16-95 (118)
345 3d2w_A TAR DNA-binding protein 99.4 8.7E-13 3E-17 88.9 9.1 76 104-186 8-83 (89)
346 2hgl_A HNRPF protein, heteroge 99.4 4.4E-13 1.5E-17 97.4 8.1 74 106-184 43-122 (136)
347 2f3j_A RNA and export factor b 99.4 2.1E-12 7.3E-17 98.4 11.7 70 106-175 87-159 (177)
348 1fj7_A Nucleolin RBD1, protein 99.4 1.1E-12 3.8E-17 90.7 8.8 75 106-186 16-94 (101)
349 1wf0_A TDP-43, TAR DNA-binding 99.4 7.2E-13 2.5E-17 89.2 7.6 73 106-187 4-78 (88)
350 1wel_A RNA-binding protein 12; 99.4 8.1E-13 2.8E-17 94.9 8.1 70 105-175 23-96 (124)
351 2lmi_A GRSF-1, G-rich sequence 99.4 5.6E-13 1.9E-17 93.2 7.1 68 106-174 10-83 (107)
352 2ki2_A SS-DNA binding protein 99.4 2E-13 6.9E-18 92.3 4.6 72 109-185 3-78 (90)
353 3egn_A RNA-binding protein 40; 99.4 1.7E-12 5.8E-17 95.7 9.6 79 105-187 43-130 (143)
354 1iqt_A AUF1, heterogeneous nuc 99.4 4.6E-13 1.6E-17 87.3 5.7 65 109-174 1-69 (75)
355 2bz2_A Negative elongation fac 99.4 2.3E-12 7.7E-17 92.0 9.4 75 105-187 37-111 (121)
356 3q2s_C Cleavage and polyadenyl 99.4 1.4E-12 4.7E-17 103.7 8.9 69 106-174 67-141 (229)
357 1owx_A Lupus LA protein, SS-B, 99.4 3.2E-12 1.1E-16 89.9 9.5 75 4-81 16-94 (121)
358 2dit_A HIV TAT specific factor 99.4 1.2E-11 4.2E-16 87.0 12.6 81 103-187 11-102 (112)
359 2hgm_A HNRPF protein, heteroge 99.4 1.8E-12 6.1E-17 92.7 8.1 68 105-174 40-112 (126)
360 2dha_A FLJ20171 protein; RRM d 99.4 1.5E-12 5.2E-17 92.8 7.3 73 106-183 22-101 (123)
361 2dnl_A Cytoplasmic polyadenyla 99.4 2.1E-12 7.2E-17 91.3 7.8 59 106-165 7-72 (114)
362 2lcw_A RNA-binding protein FUS 99.0 8.7E-14 3E-18 98.8 0.0 78 106-187 6-95 (116)
363 2dnr_A Synaptojanin-1; RRM dom 99.3 4.9E-12 1.7E-16 83.3 8.1 74 4-83 5-86 (91)
364 2pe8_A Splicing factor 45; RRM 99.3 9.5E-12 3.3E-16 86.3 9.8 72 104-175 5-86 (105)
365 2voo_A Lupus LA protein; RNA-b 99.3 3.4E-11 1.2E-15 93.1 13.1 71 108-183 110-183 (193)
366 2xs2_A Deleted in azoospermia- 99.3 3.2E-12 1.1E-16 88.5 6.4 65 107-173 9-76 (102)
367 2j8a_A Histone-lysine N-methyl 99.3 1.6E-11 5.4E-16 86.4 8.2 72 108-183 3-92 (136)
368 3u1l_A PRE-mRNA-splicing facto 99.3 1E-11 3.5E-16 98.3 7.7 76 105-186 132-228 (240)
369 3tht_A Alkylated DNA repair pr 99.2 3.2E-11 1.1E-15 100.6 8.5 67 103-171 14-82 (345)
370 3v4m_A Splicing factor U2AF 65 99.2 7.8E-11 2.7E-15 81.7 8.1 72 106-177 4-91 (105)
371 3s6e_A RNA-binding protein 39; 99.2 1.4E-10 4.8E-15 81.4 9.4 74 104-177 4-87 (114)
372 1ufw_A Synaptojanin 2; RNP dom 99.2 7.1E-11 2.4E-15 78.1 6.2 71 4-80 13-92 (95)
373 3ue2_A Poly(U)-binding-splicin 99.1 2.3E-10 8E-15 80.8 8.2 72 106-177 19-103 (118)
374 2d9o_A DNAJ (HSP40) homolog, s 99.1 1.4E-09 5E-14 74.3 9.8 64 117-187 27-90 (100)
375 1jmt_A Splicing factor U2AF 35 99.1 6.8E-11 2.3E-15 81.8 3.2 63 112-174 20-97 (104)
376 1owx_A Lupus LA protein, SS-B, 99.0 1.8E-09 6.1E-14 75.9 9.4 65 107-173 18-86 (121)
377 3dxb_A Thioredoxin N-terminall 99.0 1.3E-09 4.3E-14 86.3 7.2 76 6-81 124-211 (222)
378 2l9w_A U4/U6 snRNA-associated- 98.8 3.2E-08 1.1E-12 66.7 9.1 70 6-78 21-95 (117)
379 2dnr_A Synaptojanin-1; RRM dom 98.8 2.5E-08 8.4E-13 65.7 7.1 54 122-184 30-83 (91)
380 2dhx_A Poly (ADP-ribose) polym 98.8 1.5E-07 5E-12 63.0 10.7 89 4-120 6-99 (104)
381 1wey_A Calcipressin 1; structu 98.7 1.7E-07 5.9E-12 63.0 9.0 76 4-82 3-83 (104)
382 1ufw_A Synaptojanin 2; RNP dom 98.6 1.2E-07 4E-12 62.7 6.7 70 105-183 13-91 (95)
383 3dxb_A Thioredoxin N-terminall 98.3 1.7E-06 5.9E-11 68.1 7.6 59 119-177 141-207 (222)
384 1uw4_A UPF3X; nonsense mediate 98.2 1.4E-05 4.7E-10 52.9 8.5 76 7-82 2-87 (91)
385 2l9w_A U4/U6 snRNA-associated- 98.1 2.3E-05 7.8E-10 52.9 8.9 67 107-175 21-92 (117)
386 1whv_A Poly(A)-specific ribonu 98.1 1E-05 3.6E-10 53.4 6.7 55 6-66 16-70 (100)
387 1wwh_A Nucleoporin 35, nucleop 98.0 3.4E-05 1.2E-09 53.4 8.0 70 6-80 24-94 (119)
388 3ctr_A Poly(A)-specific ribonu 97.9 1.2E-05 4.1E-10 53.3 4.6 54 7-66 7-60 (101)
389 2l08_A Regulator of nonsense t 97.7 0.00012 4.1E-09 48.7 6.2 76 5-81 8-94 (97)
390 1whv_A Poly(A)-specific ribonu 97.5 0.00085 2.9E-08 44.3 8.6 53 110-166 18-70 (100)
391 3p3d_A Nucleoporin 53; structu 97.4 0.0002 6.7E-09 50.3 4.8 75 4-80 5-96 (132)
392 1wey_A Calcipressin 1; structu 97.3 0.00087 3E-08 45.0 7.0 70 106-177 4-78 (104)
393 1uw4_A UPF3X; nonsense mediate 97.2 0.0043 1.5E-07 40.9 8.9 68 109-176 3-76 (91)
394 1wwh_A Nucleoporin 35, nucleop 97.1 0.0025 8.5E-08 44.1 7.8 62 108-173 25-86 (119)
395 3pq1_A Poly(A) RNA polymerase; 97.1 0.00033 1.1E-08 60.5 3.9 56 6-64 53-108 (464)
396 2dhx_A Poly (ADP-ribose) polym 97.0 0.0075 2.6E-07 40.3 8.8 55 106-164 7-66 (104)
397 3ctr_A Poly(A)-specific ribonu 96.9 0.0012 4E-08 43.8 4.5 53 110-166 8-60 (101)
398 2l08_A Regulator of nonsense t 96.2 0.017 6E-07 38.2 6.6 71 107-177 9-85 (97)
399 3p3d_A Nucleoporin 53; structu 94.7 0.061 2.1E-06 37.7 5.3 64 108-173 8-89 (132)
400 3d45_A Poly(A)-specific ribonu 94.7 0.07 2.4E-06 47.0 6.9 55 7-67 441-495 (507)
401 3pq1_A Poly(A) RNA polymerase; 94.1 0.031 1E-06 48.3 3.4 54 109-164 55-108 (464)
402 2g0c_A ATP-dependent RNA helic 91.5 0.76 2.6E-05 28.7 6.4 68 8-81 2-75 (76)
403 3d45_A Poly(A)-specific ribonu 88.1 1.5 5.2E-05 38.5 7.7 53 109-166 442-494 (507)
404 4eyt_A Telomerase associated p 84.8 5.9 0.0002 25.4 8.4 57 4-65 10-66 (129)
405 4e8u_A Putative uncharacterize 74.9 5.5 0.00019 29.2 5.1 48 8-55 14-72 (172)
406 4eyt_A Telomerase associated p 55.8 37 0.0013 21.7 7.8 56 106-165 10-66 (129)
407 3lpe_A Putative transcription 53.9 41 0.0014 21.6 6.7 33 33-67 40-72 (92)
408 2e5p_A Protein PHF1, PHD finge 50.7 7.1 0.00024 23.4 1.5 20 31-55 28-47 (68)
409 3ts2_A Protein LIN-28 homolog 45.6 3.1 0.00011 29.9 -0.8 28 21-53 2-29 (148)
410 2m0o_A PHD finger protein 1; t 45.3 9.5 0.00033 23.6 1.5 12 44-55 53-64 (79)
411 2eqj_A Metal-response element- 42.1 12 0.0004 22.6 1.5 11 44-54 40-50 (66)
412 2e5q_A PHD finger protein 19; 37.4 5.7 0.0002 23.5 -0.4 12 44-55 34-45 (63)
413 3fut_A Dimethyladenosine trans 34.9 36 0.0012 27.0 3.8 29 7-36 111-139 (271)
414 3swz_A Steroid 17-alpha-hydrox 34.4 60 0.0021 27.6 5.5 60 8-74 16-79 (494)
415 3fry_A Probable copper-exporti 34.4 71 0.0024 18.7 5.6 55 7-65 7-61 (73)
416 2ns6_A Mobilization protein A; 32.8 72 0.0024 23.6 4.9 45 11-55 75-127 (185)
417 4hcz_A PHD finger protein 1; p 32.7 21 0.0007 20.8 1.5 11 45-55 31-41 (58)
418 3tbg_A Cytochrome P450 2D6; mo 28.6 41 0.0014 28.4 3.5 57 10-73 20-79 (479)
419 3h7h_B Transcription elongatio 28.3 77 0.0026 21.0 4.0 35 32-68 40-74 (106)
420 3uzu_A Ribosomal RNA small sub 27.8 22 0.00076 28.3 1.4 31 7-37 115-145 (279)
421 1ytr_A Bacteriocin plantaricin 27.4 35 0.0012 15.5 1.4 12 20-31 14-25 (26)
422 3j21_T 50S ribosomal protein L 27.0 1.2E+02 0.0043 19.2 5.7 55 11-65 27-83 (86)
423 2od0_A Hypothetical protein VP 26.2 62 0.0021 21.2 3.3 22 18-39 4-25 (105)
424 1eij_A Hypothetical protein MT 24.1 59 0.002 20.4 2.6 20 12-31 50-69 (80)
425 4a4j_A Pacszia, cation-transpo 23.6 1.1E+02 0.0037 17.4 4.8 55 7-64 4-61 (69)
426 2rf4_B DNA-directed RNA polyme 23.6 70 0.0024 20.3 2.8 27 4-30 17-43 (87)
427 1cqm_A Ribosomal protein S6; a 23.5 99 0.0034 20.1 3.8 50 14-63 10-76 (101)
428 1qyr_A KSGA, high level kasuga 23.1 55 0.0019 25.5 2.9 23 8-30 92-114 (252)
429 3ftd_A Dimethyladenosine trans 22.2 50 0.0017 25.6 2.5 28 7-34 96-123 (249)
430 2cs4_A Protein C12ORF2; GTP bi 22.1 61 0.0021 21.1 2.4 22 11-32 21-43 (95)
431 2w7a_A LINE-1 ORF1P; RNA-bindi 22.1 1.5E+02 0.0051 19.4 4.4 72 7-78 4-98 (100)
432 3p8b_B Transcription antitermi 21.7 81 0.0028 22.3 3.4 34 33-68 33-66 (152)
433 4bby_A Alkyldihydroxyacetoneph 21.5 65 0.0022 29.2 3.4 54 12-65 349-408 (658)
434 2xk0_A Polycomb protein PCL; t 21.5 46 0.0016 20.1 1.6 12 44-55 40-51 (69)
435 1vq8_S 50S ribosomal protein L 21.4 1.6E+02 0.0056 18.6 4.7 53 11-63 26-80 (85)
436 3tqs_A Ribosomal RNA small sub 21.3 26 0.00088 27.5 0.7 29 8-36 98-126 (255)
437 1i4w_A Mitochondrial replicati 21.1 65 0.0022 26.6 3.1 22 8-29 144-165 (353)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=4.3e-34 Score=226.73 Aligned_cols=164 Identities=24% Similarity=0.348 Sum_probs=141.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
+.|+++|||+|||+++|+++|+++|++||+|.+|.|+. ++.++|||||+|.+.++|++|+..||+..+.|+.|.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 35789999999999999999999999999999999965 467889999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC--CCeEEEEeCCHHH
Q 023820 80 AHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDD 157 (276)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~--~~~~fv~f~~~~~ 157 (276)
+...... ......+|||+|||..+++++|.++|.+||.|..+.++.+.. .+||||+|.+.++
T Consensus 92 ~~~~~~~----------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~ 155 (213)
T 4f02_A 92 SQRDPSL----------------RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 155 (213)
T ss_dssp CCCCTHH----------------HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHH
T ss_pred ccccccc----------------cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHH
Confidence 7643211 111234699999999999999999999999999999988753 4699999999999
Q ss_pred HHHHHHhcCCceecccceeeEEeeecccC
Q 023820 158 MKHAIKKLDDSEFRNAFSRAYVRVREYDH 186 (276)
Q Consensus 158 a~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 186 (276)
|.+|++.|||..+.| ..|.|..+..
T Consensus 156 a~~Ai~~lng~~~~g----~~i~V~~a~~ 180 (213)
T 4f02_A 156 AERAIEKMNGMLLND----RKVFVGRFKS 180 (213)
T ss_dssp HHHHHHHHTTCEETT----EECEEEECCC
T ss_pred HHHHHHHhCCCEECC----EEEEEEEcCC
Confidence 999999999999999 5666665543
No 2
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=2.6e-33 Score=220.20 Aligned_cols=177 Identities=16% Similarity=0.218 Sum_probs=142.8
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 4 RASRTLYVGNLP-GDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 4 ~~~~~l~v~nL~-~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
.++++|||+||| +.+++++|+++|++||.|..|++..+ .+|||||+|.+.++|+.|++.|||..|.|++|.|.+++.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 478999999999 79999999999999999999999754 479999999999999999999999999999999999975
Q ss_pred CCCCCCCCCC---C-----CCCCC-----------CCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCe--eEEEEee
Q 023820 83 GRGRSSSDRH---S-----SHSSG-----------RGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDV--CFSQVFR 141 (276)
Q Consensus 83 ~~~~~~~~~~---~-----~~~~~-----------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i--~~~~~~~ 141 (276)
....+..... . .+... .......+..+|||+|||..+++++|.++|.+||.| ..+.++.
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~ 159 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFS 159 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECS
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEc
Confidence 4432111000 0 00000 000112345569999999999999999999999999 8888887
Q ss_pred cC--CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeee
Q 023820 142 DG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 182 (276)
Q Consensus 142 ~~--~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~ 182 (276)
+. ..++|||+|.+.++|.+|+..|||..+.|......+.+.
T Consensus 160 ~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk 202 (205)
T 3tyt_A 160 GKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLK 202 (205)
T ss_dssp CCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECE
T ss_pred CCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEE
Confidence 64 347999999999999999999999999997665555543
No 3
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=9.1e-33 Score=210.75 Aligned_cols=152 Identities=26% Similarity=0.425 Sum_probs=136.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
++++|||+|||+++++++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|+.|+..|||..+.|++|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 468999999999999999999999999999999965 45677999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHH
Q 023820 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDD 157 (276)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~ 157 (276)
... ......+|+|+|||..+++++|.++|.+||.|..+.+..+.. .++|||+|.+.++
T Consensus 81 ~~~------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 142 (167)
T 1fxl_A 81 PSS------------------ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 142 (167)
T ss_dssp CCC------------------GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred CCc------------------ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHH
Confidence 432 122345699999999999999999999999999999988752 4699999999999
Q ss_pred HHHHHHhcCCceecccc
Q 023820 158 MKHAIKKLDDSEFRNAF 174 (276)
Q Consensus 158 a~~a~~~l~~~~~~g~~ 174 (276)
|.+|++.|+|..+.|+.
T Consensus 143 A~~A~~~l~g~~~~g~~ 159 (167)
T 1fxl_A 143 AEEAIKGLNGQKPSGAT 159 (167)
T ss_dssp HHHHHHHHTTCCCTTCS
T ss_pred HHHHHHHhcCCccCCCc
Confidence 99999999999999954
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3.8e-32 Score=207.62 Aligned_cols=151 Identities=28% Similarity=0.435 Sum_probs=136.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.++++|||+|||+++++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|+.|+..|||..+.|+.|.|.++
T Consensus 1 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 1 ASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp -CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 3689999999999999999999999999999999954 5667899999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHH
Q 023820 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYD 156 (276)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~ 156 (276)
.... ......+|+|+|||..+++++|.++|.+||.|..+.+..+.. .++|||+|.+.+
T Consensus 81 ~~~~------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 142 (168)
T 1b7f_A 81 RPGG------------------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKRE 142 (168)
T ss_dssp CCCS------------------STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCCc------------------ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 7543 123445699999999999999999999999999999988763 369999999999
Q ss_pred HHHHHHHhcCCceecc
Q 023820 157 DMKHAIKKLDDSEFRN 172 (276)
Q Consensus 157 ~a~~a~~~l~~~~~~g 172 (276)
+|.+|+..|+|..+.|
T Consensus 143 ~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 143 EAQEAISALNNVIPEG 158 (168)
T ss_dssp HHHHHHHHHTTCCCTT
T ss_pred HHHHHHHHhcCCEecC
Confidence 9999999999999977
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-32 Score=206.93 Aligned_cols=158 Identities=25% Similarity=0.395 Sum_probs=138.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCCC
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~~ 84 (276)
++|||+|||+++|+++|.++|++||+|..|.+.. ++.++|||||+|.+.++|+.|+..|||..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 5899999999999999999999999999999964 35678999999999999999999999999999999999986543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHH
Q 023820 85 GRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKH 160 (276)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~ 160 (276)
.. ......+|+|+|||..+++++|.++|.+||.|..+.+..+.. .|+|||+|.+.++|.+
T Consensus 81 ~~----------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 144 (166)
T 3md3_A 81 QS----------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 144 (166)
T ss_dssp CC----------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred CC----------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 21 223345699999999999999999999999999999998743 4599999999999999
Q ss_pred HHHhcCCceecccceeeEEeeecc
Q 023820 161 AIKKLDDSEFRNAFSRAYVRVREY 184 (276)
Q Consensus 161 a~~~l~~~~~~g~~~~~~i~~~~~ 184 (276)
|+..|+|..+.| ..+.+..+
T Consensus 145 A~~~l~g~~~~g----~~i~v~~a 164 (166)
T 3md3_A 145 AMDSMQGQDLNG----RPLRINWA 164 (166)
T ss_dssp HHHHHTTCEETT----EECEEEES
T ss_pred HHHHhCCCccCC----cEEEEEec
Confidence 999999999999 55555543
No 6
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=1.2e-31 Score=221.74 Aligned_cols=177 Identities=19% Similarity=0.285 Sum_probs=143.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEE
Q 023820 3 SRASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~----~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~ 78 (276)
..++++|||+|||+++++++|+ ++|+.||.|..|.+..++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4789999999999999999966 899999999999998888999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCC------------------------------------CCC--------------------------
Q 023820 79 LAHGGRGRSSSDRHS------------------------------------SHS-------------------------- 96 (276)
Q Consensus 79 ~a~~~~~~~~~~~~~------------------------------------~~~-------------------------- 96 (276)
|+............. ...
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 997544210000000 000
Q ss_pred ------CC-------------------------CCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCC
Q 023820 97 ------SG-------------------------RGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG 145 (276)
Q Consensus 97 ------~~-------------------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~ 145 (276)
.. ..........+|||+|||..+++++|.++|.+||.|..+.+..+. .
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~ 244 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-H 244 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-C
Confidence 00 000111233459999999999999999999999999999998765 4
Q ss_pred CeEEEEeCCHHHHHHHHHhcCCceec-ccceeeEEeeecc
Q 023820 146 TTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVREY 184 (276)
Q Consensus 146 ~~~fv~f~~~~~a~~a~~~l~~~~~~-g~~~~~~i~~~~~ 184 (276)
+||||+|.+.++|.+|+..|+|..+. | ..|.+..+
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l~v~~a 280 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQN----NAMKISFA 280 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCC----CEEEEEEe
Confidence 69999999999999999999999999 7 55555543
No 7
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=7.3e-32 Score=211.23 Aligned_cols=167 Identities=15% Similarity=0.304 Sum_probs=137.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.+.++|||+|||+++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+. +++..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecc
Confidence 4678999999999999999999999999999999965 35678999999999999999999 5999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHH
Q 023820 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYD 156 (276)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~ 156 (276)
......... .......+|||+|||..+++++|.++|..||.|..+.+..+.. .+||||+|.+.+
T Consensus 90 ~~~~~~~~~------------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~ 157 (196)
T 1l3k_A 90 VSREDSQRP------------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157 (196)
T ss_dssp CC-----------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred cCccccccc------------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHH
Confidence 754322110 1223345699999999999999999999999999999998853 469999999999
Q ss_pred HHHHHHHhcCCceecccceeeEEeeecccCCC
Q 023820 157 DMKHAIKKLDDSEFRNAFSRAYVRVREYDHRR 188 (276)
Q Consensus 157 ~a~~a~~~l~~~~~~g~~~~~~i~~~~~~~~r 188 (276)
+|.+|+.. ++..+.| ..+.+..+..+.
T Consensus 158 ~A~~A~~~-~~~~~~G----~~i~v~~a~~k~ 184 (196)
T 1l3k_A 158 SVDKIVIQ-KYHTVNG----HNCEVRKALSKQ 184 (196)
T ss_dssp HHHHHHHC-SCCEETT----EECEEEECC---
T ss_pred HHHHHHHh-CCcEECC----EEEEEEecCChh
Confidence 99999986 7999999 566666655543
No 8
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=2.8e-31 Score=212.84 Aligned_cols=175 Identities=18% Similarity=0.262 Sum_probs=141.1
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 3 SRASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 3 ~~~~~~l~v~nL~~-~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
..++++|||+|||+ .+++++|+++|+.||.|..|.|..+. +|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 35789999999999 99999999999999999999997654 7899999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCC--------------CCCC---CCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcC-CeeEEEEeecC
Q 023820 82 GGRGRSSSDRHS--------------SHSS---GRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDG 143 (276)
Q Consensus 82 ~~~~~~~~~~~~--------------~~~~---~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~~~~~~~~ 143 (276)
............ .... ........+..+|+|+|||..+++++|.++|.+|| .|..+.+...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~- 187 (229)
T 2adc_A 109 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 187 (229)
T ss_dssp CCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-
T ss_pred CccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-
Confidence 653221111000 0000 00011123356699999999999999999999999 9999998653
Q ss_pred CCCeEEEEeCCHHHHHHHHHhcCCceec-ccceeeEEeeecc
Q 023820 144 SGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVREY 184 (276)
Q Consensus 144 ~~~~~fv~f~~~~~a~~a~~~l~~~~~~-g~~~~~~i~~~~~ 184 (276)
..++|||+|.+.++|.+|+..|+|..+. | ..+.+...
T Consensus 188 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g----~~l~v~~a 225 (229)
T 2adc_A 188 DRKMALIQMGSVEEAVQALIDLHNHDLGEN----HHLRVSFS 225 (229)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCBSSSS----CBCEEEEC
T ss_pred CCcEEEEEECCHHHHHHHHHHHCCCccCCC----CeEEEEEe
Confidence 3579999999999999999999999998 7 44555443
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.98 E-value=1.2e-30 Score=204.57 Aligned_cols=175 Identities=22% Similarity=0.381 Sum_probs=140.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKY----G-------PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~----G-------~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g 72 (276)
..+++|||+|||+++++++|+++|+.| | .|..+.+. .++|||||+|.+.++|++|+ .|||..|.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---TTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 468999999999999999999999999 5 66666664 56899999999999999999 699999999
Q ss_pred ceEEEEEccCCCCCCCCCCCCCC--CCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CC
Q 023820 73 HRLRVELAHGGRGRSSSDRHSSH--SSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GT 146 (276)
Q Consensus 73 ~~i~v~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~ 146 (276)
+.|.|.++............... .+......+....+|||+|||..+++++|.++|.+||.|..+.+..+.. .+
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcce
Confidence 99999998765433221111111 1111122234455699999999999999999999999999999998853 46
Q ss_pred eEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecccC
Q 023820 147 TGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 186 (276)
Q Consensus 147 ~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 186 (276)
||||+|.+.++|..|+..|+|..+.| ..+.+.....
T Consensus 158 ~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~ 193 (198)
T 2yh0_A 158 YAFCEYVDINVTDQAIAGLNGMQLGD----KKLLVQRASV 193 (198)
T ss_dssp EEEEEESSSSHHHHHHHHHTTCEETT----EECEEEESCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEECCC
Confidence 99999999999999999999999999 6677766554
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.98 E-value=4.9e-31 Score=202.24 Aligned_cols=153 Identities=24% Similarity=0.446 Sum_probs=134.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKY----G-------PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~----G-------~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g 72 (276)
+++++|||+|||+++|+++|+++|++| | .|..+.+. .++|||||+|.++++|++|+ .|||..+.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---~~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---TTTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---CCCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 467999999999999999999999999 6 77777775 45899999999999999999 799999999
Q ss_pred ceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeE
Q 023820 73 HRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTG 148 (276)
Q Consensus 73 ~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~ 148 (276)
+.|.|.++.... .+....+|+|+|||..+++++|.++|.+||+|..+.+..+.. .++|
T Consensus 78 ~~i~v~~~~~~~------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~a 139 (172)
T 2g4b_A 78 QSLKIRRPHDYQ------------------PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYA 139 (172)
T ss_dssp EECEEECCSSCC------------------CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEE
T ss_pred ceeeecCCcccC------------------CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEE
Confidence 999999875432 122356699999999999999999999999999999998853 3699
Q ss_pred EEEeCCHHHHHHHHHhcCCceecccceeeEEeee
Q 023820 149 IVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 182 (276)
Q Consensus 149 fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~ 182 (276)
||+|.+.++|.+|+..|+|..+.| ..+.|.
T Consensus 140 fV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~ 169 (172)
T 2g4b_A 140 FCEYVDINVTDQAIAGLNGMQLGD----KKLLVQ 169 (172)
T ss_dssp EEEESSTTHHHHHHHHHTTCEETT----EECEEE
T ss_pred EEEeCCHHHHHHHHHHcCCCEECC----eEEEEE
Confidence 999999999999999999999999 555554
No 11
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.98 E-value=5.8e-31 Score=209.20 Aligned_cols=171 Identities=20% Similarity=0.316 Sum_probs=140.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
+.++|||+|||+++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 358999999999999999999999999999999965 46789999999999999999999999999999999998865
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHH
Q 023820 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDD 157 (276)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~ 157 (276)
.......... ..........+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++
T Consensus 107 ~~~~~~~~~~-------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~ 179 (216)
T 2qfj_A 107 NIGQAQPIID-------QLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQS 179 (216)
T ss_dssp CCGGGHHHHH-------HHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred Cccccchhhh-------hhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHH
Confidence 4321100000 0000112345699999999999999999999999999999998853 4699999999999
Q ss_pred HHHHHHhcCCceecccceeeEEeeecccC
Q 023820 158 MKHAIKKLDDSEFRNAFSRAYVRVREYDH 186 (276)
Q Consensus 158 a~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 186 (276)
|.+|+..|++..+.| ..|.|.....
T Consensus 180 A~~A~~~l~g~~~~g----~~i~V~~a~~ 204 (216)
T 2qfj_A 180 SQDAVSSMNLFDLGG----QYLRVGKAVT 204 (216)
T ss_dssp HHHHHHHHTTCBCSS----SBCEEEECSS
T ss_pred HHHHHHHccCCEeCC----cEEEEEEecC
Confidence 999999999999999 5566665544
No 12
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.98 E-value=4.3e-31 Score=207.22 Aligned_cols=165 Identities=19% Similarity=0.277 Sum_probs=136.0
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCCC
Q 023820 6 SRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (276)
Q Consensus 6 ~~~l~v~nL~~-~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~~ 84 (276)
+++|||+|||+ ++++++|+++|+.||.|..|.+..+. +|||||+|.+.++|+.|+..|||..|.|+.|.|.++....
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 58999999999 99999999999999999999997654 7899999999999999999999999999999999998653
Q ss_pred CCCCCCCCC-----------------CCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcC-CeeEEEEeecCCCC
Q 023820 85 GRSSSDRHS-----------------SHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSGT 146 (276)
Q Consensus 85 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~ 146 (276)
......... ............+..+|+|+|||..+++++|.++|.+|| .|..+.+..+. .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-~g 159 (198)
T 1qm9_A 81 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-RK 159 (198)
T ss_dssp CCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-SS
T ss_pred cCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-Cc
Confidence 221111000 000000111223456699999999999999999999999 99999986643 67
Q ss_pred eEEEEeCCHHHHHHHHHhcCCceec-cc
Q 023820 147 TGIVDYTNYDDMKHAIKKLDDSEFR-NA 173 (276)
Q Consensus 147 ~~fv~f~~~~~a~~a~~~l~~~~~~-g~ 173 (276)
+|||+|.+.++|.+|+..|+|..+. |+
T Consensus 160 ~afV~f~~~~~A~~A~~~l~g~~~~~g~ 187 (198)
T 1qm9_A 160 MALIQMGSVEEAVQALIDLHNHDLGENH 187 (198)
T ss_dssp CEEEECSSHHHHHHHHHHHTSSCCSSCC
T ss_pred EEEEEeCCHHHHHHHHHHhcCCccCCCC
Confidence 9999999999999999999999998 73
No 13
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=3.5e-31 Score=203.55 Aligned_cols=151 Identities=17% Similarity=0.315 Sum_probs=132.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCC-----CCCceEEEEecCHHHHHHHHHhcCCCccC---CceEE
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP-----RPPGYAFVEFEEARDAEDAIRGRDGYDFD---GHRLR 76 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~-----~~~g~afV~f~~~e~a~~A~~~lng~~~~---g~~i~ 76 (276)
++++|||+|||+++|+++|+++|++||+|..|.+..+. .++|||||+|.+.++|+.|++.|||..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999996532 56899999999999999999999998876 67888
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC---CCeEEEEeC
Q 023820 77 VELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYT 153 (276)
Q Consensus 77 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~ 153 (276)
+.++..... ......+|+|+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.
T Consensus 82 ~~~~~~~~~-----------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~ 144 (175)
T 3nmr_A 82 MKPADSEKN-----------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFT 144 (175)
T ss_dssp EEECGGGCC-----------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEES
T ss_pred Ecccccccc-----------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEEC
Confidence 888765332 122345699999999999999999999999999999998854 358999999
Q ss_pred CHHHHHHHHHhcCCceecc
Q 023820 154 NYDDMKHAIKKLDDSEFRN 172 (276)
Q Consensus 154 ~~~~a~~a~~~l~~~~~~g 172 (276)
+.++|.+|+..|+|..+.+
T Consensus 145 ~~~~A~~A~~~l~g~~~~~ 163 (175)
T 3nmr_A 145 TRAMAQTAIKAMHQAQTME 163 (175)
T ss_dssp SHHHHHHHHHHHTTSCCCT
T ss_pred CHHHHHHHHHHhcCCcccC
Confidence 9999999999999987764
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=1e-31 Score=206.69 Aligned_cols=162 Identities=17% Similarity=0.255 Sum_probs=136.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--ecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~--~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
..++++|||+|||+++++++|+++|..||.|..+.+ ..++.++|||||+|.+.++|++|++ |||..|.|++|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 467899999999999999999999999997766222 3356789999999999999999996 9999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHH
Q 023820 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKH 160 (276)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~ 160 (276)
...... ......+|||+|||..+++++|.++|.+||.|..+ .......+||||+|.+.++|.+
T Consensus 89 ~~~~~~----------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~ 151 (175)
T 1fje_B 89 KGRDSK----------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEK 151 (175)
T ss_dssp CCSSCS----------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHH
T ss_pred CCcccc----------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHH
Confidence 754321 22234569999999999999999999999999877 3334567899999999999999
Q ss_pred HHHhcCCceecccceeeEEeeecccC
Q 023820 161 AIKKLDDSEFRNAFSRAYVRVREYDH 186 (276)
Q Consensus 161 a~~~l~~~~~~g~~~~~~i~~~~~~~ 186 (276)
|+..|+|..+.| ..+.+..+..
T Consensus 152 A~~~l~g~~~~g----~~i~v~~a~~ 173 (175)
T 1fje_B 152 NLEEKQGAEIDG----RSVSLYYTGE 173 (175)
T ss_dssp HHHHHTEEEETT----EEEEEEECSS
T ss_pred HHHHhCCCEECC----eEEEEEecCC
Confidence 999999999999 5677665543
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=2.1e-31 Score=203.33 Aligned_cols=158 Identities=18% Similarity=0.373 Sum_probs=136.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
+++++|||+|||+++|+++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|++|+.. +..+.|+.|.|.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 4679999999999999999999999999999999965 467899999999999999999994 57899999999887
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHH
Q 023820 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYD 156 (276)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~ 156 (276)
.... ......+|+|+|||..+++++|.++|.+||.|..+.+..+. ..|||||+|.+.+
T Consensus 79 ~~~~------------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 140 (167)
T 2cjk_A 79 IPRD------------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSAD 140 (167)
T ss_dssp CCHH------------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHH
T ss_pred cchh------------------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHH
Confidence 5422 11234469999999999999999999999999999998774 3469999999999
Q ss_pred HHHHHHHhcCCceecccceeeEEeeecccC
Q 023820 157 DMKHAIKKLDDSEFRNAFSRAYVRVREYDH 186 (276)
Q Consensus 157 ~a~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 186 (276)
+|.+|++ +++..+.| ..+.+..+.+
T Consensus 141 ~a~~A~~-~~~~~~~g----~~i~V~~a~p 165 (167)
T 2cjk_A 141 AVDRVCQ-NKFIDFKD----RKIEIKRAEP 165 (167)
T ss_dssp HHHHHHH-CSEECSSS----SCEEEEECCC
T ss_pred HHHHHHh-CCCEEeCC----eEEEEeecCC
Confidence 9999998 89999999 5566665443
No 16
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.6e-29 Score=206.57 Aligned_cols=155 Identities=26% Similarity=0.375 Sum_probs=133.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
.+.++|||+|||+++|+++|+++|+.||.|..|.+. .++|||||+|.+.++|..|+..|||..|.|+.|.|.++..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~---~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~- 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN---RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH- 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe---CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc-
Confidence 355799999999999999999999999999999997 4589999999999999999999999999999999999752
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC---CCeEEEEeCCHHHHHH
Q 023820 84 RGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKH 160 (276)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~ 160 (276)
..+|||+|||..+++++|.++|..||.|..+.++.+.. .|||||+|.+.++|..
T Consensus 96 -----------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~ 152 (261)
T 3sde_A 96 -----------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARK 152 (261)
T ss_dssp -----------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHH
T ss_pred -----------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHH
Confidence 35699999999999999999999999999999988853 3699999999999999
Q ss_pred HHHhcCCceecccceeeEEeeeccc
Q 023820 161 AIKKLDDSEFRNAFSRAYVRVREYD 185 (276)
Q Consensus 161 a~~~l~~~~~~g~~~~~~i~~~~~~ 185 (276)
|+..|++..+........+.|....
T Consensus 153 A~~~l~~~~~~~~~~~r~i~v~~~~ 177 (261)
T 3sde_A 153 ALERCGDGAFLLTTTPRPVIVEPME 177 (261)
T ss_dssp HHHHHHHSCEESSSSCCBCEEEECC
T ss_pred HHHHhcCCeEEecCCCceEEEeecc
Confidence 9999955444321122455555444
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=3.9e-29 Score=206.87 Aligned_cols=164 Identities=20% Similarity=0.257 Sum_probs=143.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.+.++|||+|||+.+++++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|..|+..|||..+.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4578999999999999999999999999999999864 4667899999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCC-CHHHHHHHhhhcCCeeEEEEeecCC---CCeEEEEeCCHH
Q 023820 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYD 156 (276)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~-~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~ 156 (276)
....... ......+|+|+|||..+ ++++|.++|..||.|..+.++.+.. .++|||+|.+.+
T Consensus 173 ~~~~~~~---------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 237 (284)
T 3smz_A 173 DAGQLTP---------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAE 237 (284)
T ss_dssp CGGGCCT---------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHH
T ss_pred CCCCCCc---------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHH
Confidence 7643211 22345669999999995 9999999999999999999988754 369999999999
Q ss_pred HHHHHHHhcCCceecccceeeEEeeecccC
Q 023820 157 DMKHAIKKLDDSEFRNAFSRAYVRVREYDH 186 (276)
Q Consensus 157 ~a~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 186 (276)
+|.+|+..|+|..+.| ..+.+.....
T Consensus 238 ~A~~A~~~l~g~~~~g----~~l~v~~a~~ 263 (284)
T 3smz_A 238 MAEEAQQQADGLSLGG----SHLRVSFCAP 263 (284)
T ss_dssp HHHHHHHHHTTCEETT----EECEEEECCS
T ss_pred HHHHHHHHhCCCccCC----eEEEEEEecC
Confidence 9999999999999999 5666665544
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=2e-29 Score=209.39 Aligned_cols=166 Identities=15% Similarity=0.253 Sum_probs=138.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEecC--CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G-~v~~v~~~~~--~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
+.++|||+|||+.+++++|.++|+.|| .|..|.+..+ +.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 9999999653 5678999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCC-CCHHHHHHHhhhcCCeeEEEEeecCC-----CCeEEEEeCCH
Q 023820 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGS-----GTTGIVDYTNY 155 (276)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~-----~~~~fv~f~~~ 155 (276)
........ ........+|||+|||.. +++++|.++|.+||.|..+.++.+.. .+||||+|.+.
T Consensus 196 ~~~~~~~~-----------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 196 PLEKSKRT-----------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp CC--------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred CCcccccc-----------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 54432211 012334566999999999 99999999999999999999987654 57999999999
Q ss_pred HHHHHHHHhcCCceecccceeeEEeeecccC
Q 023820 156 DDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 186 (276)
Q Consensus 156 ~~a~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 186 (276)
++|..|+ .|+|..+.| ..+.|..+..
T Consensus 265 ~~A~~A~-~l~g~~~~g----~~i~V~~a~~ 290 (292)
T 2ghp_A 265 DSAERAL-QMNRSLLGN----REISVSLADK 290 (292)
T ss_dssp HHHHHHG-GGTTEEETT----EEEEEEECCC
T ss_pred HHHHHHH-HhcCCEECC----cEEEEEEecC
Confidence 9999999 999999999 6666665543
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=1.6e-28 Score=203.16 Aligned_cols=151 Identities=25% Similarity=0.326 Sum_probs=135.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
.++++|||+|||+++|+++|.++|+.|| |..+.+ +.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~-- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP-- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC--
Confidence 3679999999999999999999999999 999988 3678999999999999999999999999999999999843
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHH
Q 023820 84 RGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMK 159 (276)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~ 159 (276)
...+|||+|||..+++++|.++|..||.|..+.++.+.. .|||||+|.+.++|.
T Consensus 94 ----------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 151 (284)
T 3smz_A 94 ----------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAA 151 (284)
T ss_dssp ----------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred ----------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHH
Confidence 235699999999999999999999999999999988753 359999999999999
Q ss_pred HHHHhcCCceecccceeeEEeeecccC
Q 023820 160 HAIKKLDDSEFRNAFSRAYVRVREYDH 186 (276)
Q Consensus 160 ~a~~~l~~~~~~g~~~~~~i~~~~~~~ 186 (276)
.|+..|++..+.| ..+.+.....
T Consensus 152 ~A~~~l~~~~~~g----~~i~v~~a~~ 174 (284)
T 3smz_A 152 RAKSDLLGKPLGP----RTLYVHWTDA 174 (284)
T ss_dssp HHHHHHTTCEETT----EECEEEECCG
T ss_pred HHHHHhCCCEeCC----cEEEEEECCC
Confidence 9999999999999 5566655443
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=9.3e-29 Score=205.42 Aligned_cols=153 Identities=20% Similarity=0.253 Sum_probs=132.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC-CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
.++++|||+|||+++|+++|.++|+.||+|..|.|..+ ..++|||||+|.+.++|+.|+. |||..|.|+.|.|.++
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~-- 115 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL-- 115 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC--
Confidence 56899999999999999999999999999999999663 2357999999999999999996 9999999999999885
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcC-CeeEEEEeecC---CCCeEEEEeCCHHHH
Q 023820 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDG---SGTTGIVDYTNYDDM 158 (276)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~~~~~~~~---~~~~~fv~f~~~~~a 158 (276)
...+|||+|||..+++++|.++|..|| .|..+.++.+. ..+||||+|.+.++|
T Consensus 116 -----------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a 172 (292)
T 2ghp_A 116 -----------------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDA 172 (292)
T ss_dssp -----------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHH
T ss_pred -----------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHH
Confidence 245699999999999999999999999 99999998765 567999999999999
Q ss_pred HHHHHhcCCceecccceeeEEeeecccC
Q 023820 159 KHAIKKLDDSEFRNAFSRAYVRVREYDH 186 (276)
Q Consensus 159 ~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 186 (276)
..|+..|+|..+.| ..+.+.....
T Consensus 173 ~~A~~~l~g~~~~g----~~l~v~~a~~ 196 (292)
T 2ghp_A 173 RYCVEKLNGLKIEG----YTLVTKVSNP 196 (292)
T ss_dssp HHHHHHHTTCEETT----EECEEEECCC
T ss_pred HHHHHHhCCCEeCC----cEEEEEECCC
Confidence 99999999999999 5666655443
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.91 E-value=1.5e-24 Score=154.66 Aligned_cols=109 Identities=19% Similarity=0.324 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC-CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
.+++|||+|||+++++++|+++|++||.|..|.|..+ +.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 3678999999999999999999999999999999653 446899999999999999999999999999999999998754
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHH
Q 023820 84 RGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQD 123 (276)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 123 (276)
....... ........+|||+|||+.+|++.
T Consensus 84 ~~~~~~~----------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAEL----------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC--------------------------------------
T ss_pred ccccccc----------ccccCCCCceEeCCCCCCccccc
Confidence 3221111 11223344599999999998763
No 22
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.90 E-value=1.4e-22 Score=175.93 Aligned_cols=82 Identities=35% Similarity=0.623 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.+.++|||+|||+.||+++|.++|++||.|..|.|+. ++.++|||||+|.+.++|++||..|||..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4568999999999999999999999999999999964 5678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 023820 81 HGGRG 85 (276)
Q Consensus 81 ~~~~~ 85 (276)
.....
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 86554
No 23
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.87 E-value=1.6e-22 Score=144.26 Aligned_cols=106 Identities=29% Similarity=0.454 Sum_probs=94.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 2 ~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
...++++|||+|||+.+++++|+++|+.||.|..|.+..++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 45678999999999999999999999999999999999888889999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCC
Q 023820 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGD 133 (276)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~ 133 (276)
..... .+++...++++|.++|.+||-
T Consensus 84 ~~~~~--------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRAF--------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHHT--------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred CChhh--------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 53321 345667789999999999984
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=2.7e-22 Score=138.75 Aligned_cols=78 Identities=28% Similarity=0.488 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
..++|||+|||+++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|++|.|.||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 457899999999999999999999999999999965 46788999999999999999999999999999999999986
Q ss_pred C
Q 023820 82 G 82 (276)
Q Consensus 82 ~ 82 (276)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 25
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.87 E-value=9.2e-22 Score=170.74 Aligned_cols=161 Identities=17% Similarity=0.185 Sum_probs=100.3
Q ss_pred CCCCCCCHHHHHHHHhhcCCeeEEEE----ecCC-CCCceE-----EEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 13 NLPGDIREREVEDLFYKYGPIAHIDL----KIPP-RPPGYA-----FVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 13 nL~~~~t~~~l~~~F~~~G~v~~v~~----~~~~-~~~g~a-----fV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
.||++ |..+|.++|+|..|.. +... ...+|+ |++|.+...+..++..++.....++.........
T Consensus 4 ~lPp~-----L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~ 78 (437)
T 3pgw_S 4 FLPPN-----LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERR 78 (437)
T ss_pred cCCcc-----HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHH
Confidence 45654 7899999999988733 2111 223344 7788776666555544433322221000000000
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHH
Q 023820 83 GRGRSSSDRHSSH-SSGRGRGVSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDD 157 (276)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~ 157 (276)
...... ..... .............+|||+|||..+++++|.++|.+||.|..|.|+.+. ..+||||+|.+.++
T Consensus 79 ~~~~~~--~~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~ 156 (437)
T 3pgw_S 79 QQEVET--ELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERD 156 (437)
T ss_pred HHHHHH--hhhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHH
Confidence 000000 00000 000011122345569999999999999999999999999999998774 45799999999999
Q ss_pred HHHHHHhcCCceecccceeeEEeeecc
Q 023820 158 MKHAIKKLDDSEFRNAFSRAYVRVREY 184 (276)
Q Consensus 158 a~~a~~~l~~~~~~g~~~~~~i~~~~~ 184 (276)
|.+||..|||..|.| ..|.|..+
T Consensus 157 A~~Ai~~lng~~i~g----r~i~V~~a 179 (437)
T 3pgw_S 157 MHSAYKHADGKKIDG----RRVLVDVE 179 (437)
T ss_pred HHHHHHHcCCCEECC----EEEEEEEe
Confidence 999999999999999 44554433
No 26
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.86 E-value=3.6e-21 Score=126.79 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
-.+..|||+||++.+|+++|+++|.+||+|..+.+.. ++|||||+|.++++|.+|++.|||..+.|++|.|.+|
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4578899999999999999999999999999999974 7999999999999999999999999999999999987
No 27
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.8e-21 Score=135.76 Aligned_cols=84 Identities=60% Similarity=1.058 Sum_probs=78.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 2 ~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
...+.++|||+|||+++++++|+++|++||.|..|.|..++.+++||||+|.+.++|++|++.||+..|.|+.|.|.++.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 34678999999999999999999999999999999998888889999999999999999999999999999999999998
Q ss_pred CCCC
Q 023820 82 GGRG 85 (276)
Q Consensus 82 ~~~~ 85 (276)
....
T Consensus 98 ~~~~ 101 (109)
T 1x4a_A 98 SGRG 101 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6543
No 28
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.86 E-value=1.6e-21 Score=135.75 Aligned_cols=100 Identities=44% Similarity=0.647 Sum_probs=83.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCCCCC
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~~~~ 86 (276)
++|||+|||+++++++|+++|++||+|..|.+..+ ++|||||+|.+.++|++|+..|||..|.|+.|.|.++......
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 58999999999999999999999999999999866 7899999999999999999999999999999999999876533
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcEEEeCCC
Q 023820 87 SSSDRHSSHSSGRGRGVSRRSEYLLVTGLP 116 (276)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 116 (276)
..... ..........|||+||+
T Consensus 79 ~~~~~--------~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 79 SRFDR--------PPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCCCS--------CCCSCCCCSCCCSCCCC
T ss_pred ccCCC--------CCccccCCCceecCCCC
Confidence 21111 11122334559999986
No 29
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.6e-21 Score=134.60 Aligned_cols=82 Identities=20% Similarity=0.278 Sum_probs=73.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcC--CCccCCceEEEEE
Q 023820 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRLRVEL 79 (276)
Q Consensus 2 ~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~ln--g~~~~g~~i~v~~ 79 (276)
+..+.++|||+|||+++|+++|+++|++||+|.+|.|..+ +|||||+|.+.++|+.|+..|+ +..|.|++|.|.|
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3568899999999999999999999999999999999853 8999999999999999999886 4789999999999
Q ss_pred ccCCCCC
Q 023820 80 AHGGRGR 86 (276)
Q Consensus 80 a~~~~~~ 86 (276)
+......
T Consensus 89 A~~~~~~ 95 (105)
T 1sjq_A 89 SNHKELK 95 (105)
T ss_dssp CSSSSCC
T ss_pred cCCCCCC
Confidence 9865543
No 30
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=8.2e-22 Score=134.24 Aligned_cols=80 Identities=19% Similarity=0.335 Sum_probs=72.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcC-CCccCCceEEEEEc
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRD-GYDFDGHRLRVELA 80 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G-~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~ln-g~~~~g~~i~v~~a 80 (276)
+++|||+|||+++|+++|+++|++|| +|.+|.|+. ++.++|||||+|.+.++|++|++.|+ +..+.|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 58999999999999999999999999 899999865 47889999999999999999999774 56799999999999
Q ss_pred cCCCC
Q 023820 81 HGGRG 85 (276)
Q Consensus 81 ~~~~~ 85 (276)
.+...
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 86554
No 31
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.85 E-value=9.3e-21 Score=135.03 Aligned_cols=86 Identities=27% Similarity=0.509 Sum_probs=78.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEE
Q 023820 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (276)
Q Consensus 1 m~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~ 78 (276)
|...++++|||+|||+++++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.
T Consensus 2 ~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp CTTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3467889999999999999999999999999999999965 56788999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 023820 79 LAHGGRGR 86 (276)
Q Consensus 79 ~a~~~~~~ 86 (276)
++......
T Consensus 82 ~a~~~~~~ 89 (116)
T 2fy1_A 82 QAKKPSFQ 89 (116)
T ss_dssp ECCCSSCS
T ss_pred ECCCCCCC
Confidence 99865543
No 32
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.85 E-value=4.5e-21 Score=131.05 Aligned_cols=78 Identities=22% Similarity=0.313 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCc--cCCceEEEEEc
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD--FDGHRLRVELA 80 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~--~~g~~i~v~~a 80 (276)
..|+++|||+|||+.+|+++|.++|++||.|..|.+. ..+|||||+|.+.++|.+|+..||+.. |.|++|.|+++
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~---~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM---PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE---cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 3689999999999999999999999999999999997 358999999999999999999999875 78999999999
Q ss_pred cCC
Q 023820 81 HGG 83 (276)
Q Consensus 81 ~~~ 83 (276)
+.+
T Consensus 95 ~~k 97 (100)
T 3r27_A 95 TSQ 97 (100)
T ss_dssp SCS
T ss_pred ccc
Confidence 764
No 33
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=3.4e-21 Score=135.72 Aligned_cols=80 Identities=19% Similarity=0.338 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
..|.++|||+|||+++++++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35789999999999999999999999999999999965 367889999999999999999999999999999999999
Q ss_pred ccC
Q 023820 80 AHG 82 (276)
Q Consensus 80 a~~ 82 (276)
+..
T Consensus 83 a~~ 85 (110)
T 3s8s_A 83 DIK 85 (110)
T ss_dssp CST
T ss_pred CCC
Confidence 864
No 34
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.85 E-value=8.7e-21 Score=136.65 Aligned_cols=82 Identities=18% Similarity=0.395 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEE
Q 023820 3 SRASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~----~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~ 78 (276)
..++++|||+|||+.+++++|+ ++|++||+|..|.+..++.++|||||+|.+.++|+.|+..|||..|.|++|.|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3578999999999999999876 699999999999998888899999999999999999999999999999999999
Q ss_pred EccCCC
Q 023820 79 LAHGGR 84 (276)
Q Consensus 79 ~a~~~~ 84 (276)
|+....
T Consensus 106 ~a~~~~ 111 (127)
T 2a3j_A 106 FSETPQ 111 (127)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 997643
No 35
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.85 E-value=1.6e-20 Score=141.61 Aligned_cols=143 Identities=16% Similarity=0.075 Sum_probs=102.1
Q ss_pred EEEecC-CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeC
Q 023820 36 IDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTG 114 (276)
Q Consensus 36 v~~~~~-~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n 114 (276)
++|..+ ...+|||||+|.+.++|++|+..+++....+..+.+............ ..............+|||+|
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~v~n 77 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEG-----SHHHHHHMDVEGMTSLKVDN 77 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECC-----CCCSSCCCCCCBCCEEEEES
T ss_pred EEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccccc-----ccccccccCCCCCCEEEEeC
Confidence 444333 357899999999999999999888765433333333221110000000 00000111233455699999
Q ss_pred CCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecccCC
Q 023820 115 LPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHR 187 (276)
Q Consensus 115 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~~~~ 187 (276)
||..+++++|.++|.+||.|..+.++.+. ..|||||+|.+.++|..|+..|+|..+.| ..+.|..+...
T Consensus 78 l~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 150 (158)
T 2kn4_A 78 LTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG----RELRVQMARYG 150 (158)
T ss_dssp CCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS----SEEEEEEECCS
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEECCCC
Confidence 99999999999999999999999998874 45799999999999999999999999999 66777766554
No 36
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2e-20 Score=129.73 Aligned_cols=83 Identities=34% Similarity=0.509 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
+.++++|||+|||+++++++|+++|++||+|..|.|.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46789999999999999999999999999999999965 467889999999999999999999999999999999999
Q ss_pred ccCCCC
Q 023820 80 AHGGRG 85 (276)
Q Consensus 80 a~~~~~ 85 (276)
+.....
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987654
No 37
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.2e-20 Score=128.41 Aligned_cols=83 Identities=30% Similarity=0.508 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC---CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
+.++++|||+|||+.+++++|+++|++||.|..|.+..+ +.++|||||+|.+.++|++|+..|||..|.|++|.|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 357899999999999999999999999999999999664 67889999999999999999999999999999999999
Q ss_pred ccCCCC
Q 023820 80 AHGGRG 85 (276)
Q Consensus 80 a~~~~~ 85 (276)
+.....
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 976544
No 38
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.5e-20 Score=129.38 Aligned_cols=83 Identities=34% Similarity=0.506 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC-CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
..+.++|||+|||+.+++++|+++|++||.|..|.|..+ ..++|||||+|.+.++|++|+..|||..|.|+.|.|.|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 467899999999999999999999999999999999764 3468999999999999999999999999999999999998
Q ss_pred CCCC
Q 023820 82 GGRG 85 (276)
Q Consensus 82 ~~~~ 85 (276)
....
T Consensus 92 ~~~~ 95 (103)
T 2cqi_A 92 TPSS 95 (103)
T ss_dssp CTTC
T ss_pred CCcc
Confidence 7543
No 39
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.84 E-value=1.4e-20 Score=140.52 Aligned_cols=136 Identities=18% Similarity=0.181 Sum_probs=107.2
Q ss_pred CCCceEEEEecCHHHHHHHHHhc-CCCccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCH
Q 023820 43 RPPGYAFVEFEEARDAEDAIRGR-DGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASW 121 (276)
Q Consensus 43 ~~~g~afV~f~~~e~a~~A~~~l-ng~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~ 121 (276)
..+|+++|+|.+.++|++|+..| ||..++| .|.+.++............ ..............+|||+|||..+++
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH--HHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS--CCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc--ccccccccCCCCCCEEEEeCCCCCCCH
Confidence 56899999999999999999999 9999999 9999987643211111000 000111123344556999999999999
Q ss_pred HHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecccC
Q 023820 122 QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 186 (276)
Q Consensus 122 ~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 186 (276)
++|.++|.+||.|..+.++.+ ..+||||+|.+.++|..|+..|+|..+.| ..+.|.....
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~ 147 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCG----CRVRVELSNG 147 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSS----SCCEEEECCC
T ss_pred HHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEEcCC
Confidence 999999999999999999887 57899999999999999999999999998 5556655543
No 40
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=130.78 Aligned_cols=84 Identities=26% Similarity=0.456 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC------CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEE
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP------PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~------~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~ 76 (276)
+.++++|||+|||+++++++|+++|++||+|..|.|..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 468899999999999999999999999999999999642 25678999999999999999999999999999999
Q ss_pred EEEccCCCCC
Q 023820 77 VELAHGGRGR 86 (276)
Q Consensus 77 v~~a~~~~~~ 86 (276)
|.++......
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999875543
No 41
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=133.45 Aligned_cols=82 Identities=18% Similarity=0.274 Sum_probs=73.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcC--CCccCCceEEEEE
Q 023820 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRLRVEL 79 (276)
Q Consensus 2 ~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~ln--g~~~~g~~i~v~~ 79 (276)
...++++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|+..|+ +..|.|++|.|.+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 3467899999999999999999999999999999999853 7999999999999999999887 4689999999999
Q ss_pred ccCCCCC
Q 023820 80 AHGGRGR 86 (276)
Q Consensus 80 a~~~~~~ 86 (276)
+......
T Consensus 104 a~~k~~~ 110 (119)
T 2ad9_A 104 SNHKELK 110 (119)
T ss_dssp CSSSSCC
T ss_pred ccCCCCC
Confidence 9865543
No 42
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=3.5e-21 Score=131.67 Aligned_cols=79 Identities=20% Similarity=0.345 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCc----cCCce
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGP--IAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYD----FDGHR 74 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~--v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~----~~g~~ 74 (276)
..=+||||+|||+++|+++|+++|++||. |.+|.+.. ++.++|||||+|.+.++|++|++.|||.. |+|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 44589999999999999999999999995 67888855 47889999999999999999999999974 89999
Q ss_pred EEEEEccC
Q 023820 75 LRVELAHG 82 (276)
Q Consensus 75 i~v~~a~~ 82 (276)
|.|.||+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999874
No 43
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=1.3e-20 Score=129.76 Aligned_cols=80 Identities=29% Similarity=0.615 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC---CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
|+++|||+|||+.+++++|+++|++||.|..|.+..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 6799999999999999999999999999999999654 6779999999999999999999999999999999999997
Q ss_pred CCC
Q 023820 82 GGR 84 (276)
Q Consensus 82 ~~~ 84 (276)
...
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 44
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=6e-21 Score=131.80 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCC--ccCCceEEEEE
Q 023820 3 SRASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY--DFDGHRLRVEL 79 (276)
Q Consensus 3 ~~~~~~l~v~nL~~-~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~--~~~g~~i~v~~ 79 (276)
..|+++|||+|||+ .+|+++|+++|++||.|..|.|+. .++||||+|++.++|+.|+..||+. .|.|++|.|.+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN---KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS---SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 46889999999999 999999999999999999999974 4689999999999999999998864 59999999999
Q ss_pred ccCCC
Q 023820 80 AHGGR 84 (276)
Q Consensus 80 a~~~~ 84 (276)
+....
T Consensus 89 a~~~~ 93 (102)
T 1x4d_A 89 SQKYK 93 (102)
T ss_dssp ECCCT
T ss_pred CCCCC
Confidence 98644
No 45
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=131.23 Aligned_cols=82 Identities=37% Similarity=0.577 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC---CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.++++|||+|||+.+++++|+++|++||.|..|.|..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 56799999999999999999999999999999999653 678899999999999999999999999999999999999
Q ss_pred cCCCC
Q 023820 81 HGGRG 85 (276)
Q Consensus 81 ~~~~~ 85 (276)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 86543
No 46
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.6e-20 Score=128.70 Aligned_cols=81 Identities=20% Similarity=0.271 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhc--CCCccCCceEEEEEc
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR--DGYDFDGHRLRVELA 80 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~l--ng~~~~g~~i~v~~a 80 (276)
..|+++|||+|||+.+++++|+++|++||.|..|.|.. .+|||||+|.+.++|+.|+..| ++..|.|++|.|.|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK---GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC---CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 46789999999999999999999999999999999874 3899999999999999999976 467899999999999
Q ss_pred cCCCCC
Q 023820 81 HGGRGR 86 (276)
Q Consensus 81 ~~~~~~ 86 (276)
......
T Consensus 89 ~~~~~~ 94 (101)
T 2cq1_A 89 NHKELK 94 (101)
T ss_dssp SCSSCC
T ss_pred CcccCc
Confidence 865543
No 47
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-20 Score=128.95 Aligned_cols=81 Identities=21% Similarity=0.333 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 4 RASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~----~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
.+.++|||+|||+.+++++|+ ++|++||+|..|.|..+...++||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456899999999999999999 9999999999999986654489999999999999999999999999999999999
Q ss_pred ccCCC
Q 023820 80 AHGGR 84 (276)
Q Consensus 80 a~~~~ 84 (276)
+....
T Consensus 87 a~~~~ 91 (96)
T 2dgx_A 87 ATGAS 91 (96)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 97654
No 48
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=131.07 Aligned_cols=83 Identities=34% Similarity=0.584 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC---CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.+.++|||+|||+.+++++|+++|++||+|..|.|..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 57899999999999999999999999999999999654 678999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 023820 81 HGGRGR 86 (276)
Q Consensus 81 ~~~~~~ 86 (276)
......
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 49
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.84 E-value=4.8e-20 Score=128.66 Aligned_cols=80 Identities=24% Similarity=0.490 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
.++++|||+|||+++++++|+++|++||.|..|.+. ++||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 467999999999999999999999999999999987 679999999999999999999999999999999999876
Q ss_pred CCCCC
Q 023820 84 RGRSS 88 (276)
Q Consensus 84 ~~~~~ 88 (276)
.....
T Consensus 84 ~~~~~ 88 (103)
T 2dgu_A 84 DQKRK 88 (103)
T ss_dssp CCCCC
T ss_pred cccch
Confidence 65443
No 50
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.8e-20 Score=129.66 Aligned_cols=82 Identities=34% Similarity=0.596 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.++++|||+|||+++++++|+++|++||+|..|.|.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5789999999999999999999999999999999965 4567899999999999999999999999999999999999
Q ss_pred cCCCC
Q 023820 81 HGGRG 85 (276)
Q Consensus 81 ~~~~~ 85 (276)
.....
T Consensus 90 ~~~~~ 94 (102)
T 1x5s_A 90 GKSSD 94 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87654
No 51
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=130.58 Aligned_cols=84 Identities=26% Similarity=0.410 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec-CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~-~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
..+.++|||+|||+++++++|+++|++||.|..|.|.. ++.+++||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 45789999999999999999999999999999999965 45678999999999999999999999999999999999998
Q ss_pred CCCCC
Q 023820 82 GGRGR 86 (276)
Q Consensus 82 ~~~~~ 86 (276)
.....
T Consensus 92 ~~~~~ 96 (103)
T 2d9p_A 92 RKEER 96 (103)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76543
No 52
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=4.3e-20 Score=127.97 Aligned_cols=82 Identities=24% Similarity=0.531 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
..++++|||+|||+++++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+. ||+..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 46789999999999999999999999999999999965 36689999999999999999999 999999999999999
Q ss_pred ccCCCC
Q 023820 80 AHGGRG 85 (276)
Q Consensus 80 a~~~~~ 85 (276)
+.....
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 986554
No 53
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.2e-20 Score=129.47 Aligned_cols=82 Identities=30% Similarity=0.474 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.++++|||+|||+.+++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 5789999999999999999999999999999999965 4678899999999999999999999999999999999999
Q ss_pred cCCCC
Q 023820 81 HGGRG 85 (276)
Q Consensus 81 ~~~~~ 85 (276)
.....
T Consensus 93 ~~~~~ 97 (105)
T 1x5u_A 93 SAHNK 97 (105)
T ss_dssp TTTSC
T ss_pred CCCCc
Confidence 86554
No 54
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.83 E-value=5.6e-21 Score=131.96 Aligned_cols=84 Identities=29% Similarity=0.538 Sum_probs=76.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEE
Q 023820 1 MSSRASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (276)
Q Consensus 1 m~~~~~~~l~v~nL~~~~t~~~l~----~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~ 76 (276)
|+..++++|||+|||+++++++|+ ++|++||.|..|.+..++.++|||||+|.+.++|+.|+..|||..|.|+.|.
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456789999999999999999999 9999999999999987777789999999999999999999999999999999
Q ss_pred EEEccCCC
Q 023820 77 VELAHGGR 84 (276)
Q Consensus 77 v~~a~~~~ 84 (276)
|.++....
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99997643
No 55
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.83 E-value=1.5e-20 Score=125.91 Aligned_cols=78 Identities=24% Similarity=0.454 Sum_probs=72.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
+.+|||+|||+++++++|+++|++||+|..+.+.. ++.++|||||+|.+.++|+.|+..|||..|.|++|.|.++..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 47899999999999999999999999999999964 467789999999999999999999999999999999999976
Q ss_pred C
Q 023820 83 G 83 (276)
Q Consensus 83 ~ 83 (276)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 56
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.8e-20 Score=128.19 Aligned_cols=82 Identities=24% Similarity=0.422 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHI-DLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v-~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
.++++|||+|||+++++++|+++|++||.|..| .|.. ++.++|||||+|.+.++|++|+..|||..|.|++|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 478999999999999999999999999999999 8854 467889999999999999999999999999999999999
Q ss_pred ccCCCC
Q 023820 80 AHGGRG 85 (276)
Q Consensus 80 a~~~~~ 85 (276)
+.....
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 986553
No 57
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.7e-20 Score=127.74 Aligned_cols=78 Identities=23% Similarity=0.462 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC---CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.+.++|||+|||+.+++++|+++|++||+|..|.+..+ +.++|||||+|.+.++|++|+..|||..|.|++|.|.|+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 56799999999999999999999999999999999654 667899999999999999999999999999999999997
Q ss_pred c
Q 023820 81 H 81 (276)
Q Consensus 81 ~ 81 (276)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 58
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=1.7e-20 Score=126.25 Aligned_cols=79 Identities=34% Similarity=0.631 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
..+.++|||+|||+.+++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45889999999999999999999999999999999854 456789999999999999999999999999999999999
Q ss_pred cc
Q 023820 80 AH 81 (276)
Q Consensus 80 a~ 81 (276)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 59
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.9e-20 Score=128.62 Aligned_cols=80 Identities=19% Similarity=0.205 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCC--CccCCceEEEEEc
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG--YDFDGHRLRVELA 80 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng--~~~~g~~i~v~~a 80 (276)
..|+++|||+|||+.+++++|+++|++||.|..|.|.. .+|||||+|.+.++|++|+..||+ ..|.|++|.|.|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP---FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 35789999999999999999999999999999999874 489999999999999999998875 4599999999999
Q ss_pred cCCCC
Q 023820 81 HGGRG 85 (276)
Q Consensus 81 ~~~~~ 85 (276)
.....
T Consensus 89 ~~~~~ 93 (104)
T 1wex_A 89 TSKRI 93 (104)
T ss_dssp SSSSC
T ss_pred cCccc
Confidence 86543
No 60
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.1e-20 Score=127.83 Aligned_cols=84 Identities=24% Similarity=0.451 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC-CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
..+.++|||+|||+++++++|+++|++||.|..|.|..+ ..+++||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 357899999999999999999999999999999999754 3468999999999999999999999999999999999998
Q ss_pred CCCCC
Q 023820 82 GGRGR 86 (276)
Q Consensus 82 ~~~~~ 86 (276)
.....
T Consensus 92 ~~~~~ 96 (103)
T 2cq3_A 92 ARVMT 96 (103)
T ss_dssp SSCCC
T ss_pred cCCCC
Confidence 76543
No 61
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=127.16 Aligned_cols=80 Identities=26% Similarity=0.451 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.+.++|||+|||+++++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|+.|+..|||..+.|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4678999999999999999999999999999999965 4567899999999999999999999999999999999998
Q ss_pred cCC
Q 023820 81 HGG 83 (276)
Q Consensus 81 ~~~ 83 (276)
..+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 753
No 62
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=8.5e-20 Score=128.48 Aligned_cols=79 Identities=23% Similarity=0.300 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCC-----ceEEEE
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG-----HRLRVE 78 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g-----~~i~v~ 78 (276)
++.++|||+|||+++++++|+++|++||+|..|.|..+ |||||+|.+.++|++||+.|||..|.| +.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 56799999999999999999999999999999999865 899999999999999999999999999 999999
Q ss_pred EccCCCCC
Q 023820 79 LAHGGRGR 86 (276)
Q Consensus 79 ~a~~~~~~ 86 (276)
++......
T Consensus 89 ~a~~~~~~ 96 (108)
T 1x4c_A 89 VDGPRSPS 96 (108)
T ss_dssp ESSCCSCC
T ss_pred eCCCCCCC
Confidence 99875543
No 63
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.83 E-value=6.6e-20 Score=130.63 Aligned_cols=84 Identities=25% Similarity=0.436 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.+.++|||+|||+.+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5779999999999999999999999999999999965 4567899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 023820 81 HGGRGRS 87 (276)
Q Consensus 81 ~~~~~~~ 87 (276)
.......
T Consensus 93 ~~~~~~~ 99 (115)
T 2dgo_A 93 TRKPPAP 99 (115)
T ss_dssp SCCCCCS
T ss_pred cCCCCCC
Confidence 8765543
No 64
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.83 E-value=2.7e-20 Score=127.25 Aligned_cols=83 Identities=28% Similarity=0.465 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec-CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~-~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
..+.++|||+|||+++++++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 56889999999999999999999999999999999965 55678999999999999999999999999999999999997
Q ss_pred CCCC
Q 023820 82 GGRG 85 (276)
Q Consensus 82 ~~~~ 85 (276)
....
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6543
No 65
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5.9e-20 Score=124.95 Aligned_cols=78 Identities=35% Similarity=0.622 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
..+.++|||+|||+++++++|+++|++||+|..|.+. ++||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 4678999999999999999999999999999999998 78999999999999999999999999999999999987
Q ss_pred CCC
Q 023820 83 GRG 85 (276)
Q Consensus 83 ~~~ 85 (276)
...
T Consensus 80 ~~~ 82 (90)
T 2dnq_A 80 KSK 82 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 66
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=6.2e-20 Score=125.38 Aligned_cols=78 Identities=38% Similarity=0.649 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
..++++|||+|||+++++++|+++|++||.|..|.+. ++||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 4678999999999999999999999999999999998 56999999999999999999999999999999999986
Q ss_pred CCC
Q 023820 83 GRG 85 (276)
Q Consensus 83 ~~~ 85 (276)
...
T Consensus 82 ~~~ 84 (92)
T 2dgt_A 82 RLR 84 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 554
No 67
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.83 E-value=1.3e-20 Score=134.19 Aligned_cols=70 Identities=24% Similarity=0.326 Sum_probs=63.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEE
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v 77 (276)
+..++|||+|||+++++++|+++|++||+|..|.|..+ |||||+|.+.++|++||+.|||..|.|+.|.|
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~ 83 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 83 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeee
Confidence 45689999999999999999999999999999999754 89999999999999999999999999998655
No 68
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.4e-19 Score=129.06 Aligned_cols=83 Identities=24% Similarity=0.402 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
..+.++|||+|||+++++++|+++|++||.|..|.|.. ++.+++||||+|.+.++|++|+..||+ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 46789999999999999999999999999999999965 367889999999999999999999998 89999999999
Q ss_pred ccCCCCC
Q 023820 80 AHGGRGR 86 (276)
Q Consensus 80 a~~~~~~ 86 (276)
+......
T Consensus 93 a~~~~~~ 99 (116)
T 2cqd_A 93 AYLGAKP 99 (116)
T ss_dssp STTTCCC
T ss_pred cccCCCc
Confidence 9765443
No 69
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.1e-20 Score=130.01 Aligned_cols=80 Identities=26% Similarity=0.339 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcC--CCccCCceEEEEE
Q 023820 3 SRASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRLRVEL 79 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~-~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~ln--g~~~~g~~i~v~~ 79 (276)
..++++|||+|||++ +++++|+++|++||+|..|.|. ..+|||||+|.+.++|+.|+..|| +..|.|++|.|.+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~---~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM---RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 468899999999998 9999999999999999999997 458999999999999999999886 4669999999999
Q ss_pred ccCCCC
Q 023820 80 AHGGRG 85 (276)
Q Consensus 80 a~~~~~ 85 (276)
+.....
T Consensus 99 a~~~~~ 104 (112)
T 1x4f_A 99 SEKYKK 104 (112)
T ss_dssp ECSCSS
T ss_pred Cccccc
Confidence 976543
No 70
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.5e-20 Score=129.20 Aligned_cols=83 Identities=24% Similarity=0.418 Sum_probs=76.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee-EEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCce---
Q 023820 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIA-HIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR--- 74 (276)
Q Consensus 2 ~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~-~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~--- 74 (276)
++.++++|||+|||+++++++|+++|++||+|. .|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 457889999999999999999999999999999 999965 4567899999999999999999999999999999
Q ss_pred -EEEEEccCCC
Q 023820 75 -LRVELAHGGR 84 (276)
Q Consensus 75 -i~v~~a~~~~ 84 (276)
|.|.|+....
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999987654
No 71
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.3e-20 Score=128.71 Aligned_cols=81 Identities=25% Similarity=0.489 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC----CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEE
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP----PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~----~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~ 78 (276)
..+.++|||+|||+++++++|+++|+.|| |..|.|..+ +.++|||||+|.+.++|++|+ .|||..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 46789999999999999999999999999 999999664 667999999999999999999 899999999999999
Q ss_pred EccCCCC
Q 023820 79 LAHGGRG 85 (276)
Q Consensus 79 ~a~~~~~ 85 (276)
++.....
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987543
No 72
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=5e-20 Score=127.88 Aligned_cols=81 Identities=23% Similarity=0.482 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
.+.++|||+|||+++++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 5679999999999999999999999999999999965 45667999999999999999999999999999999999997
Q ss_pred CCC
Q 023820 82 GGR 84 (276)
Q Consensus 82 ~~~ 84 (276)
...
T Consensus 95 ~~~ 97 (100)
T 2do4_A 95 SGP 97 (100)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 73
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=8.3e-20 Score=128.41 Aligned_cols=83 Identities=25% Similarity=0.462 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec----CCCCCceEEEEecCHHHHHHHHHhc-CCCccCCceEEE
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI----PPRPPGYAFVEFEEARDAEDAIRGR-DGYDFDGHRLRV 77 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~----~~~~~g~afV~f~~~e~a~~A~~~l-ng~~~~g~~i~v 77 (276)
..++++|||+|||+.+++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..| ||..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 35789999999999999999999999999999999954 4577899999999999999999999 999999999999
Q ss_pred EEccCCCC
Q 023820 78 ELAHGGRG 85 (276)
Q Consensus 78 ~~a~~~~~ 85 (276)
.++.....
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987543
No 74
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.82 E-value=4.1e-20 Score=131.69 Aligned_cols=82 Identities=20% Similarity=0.473 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.+.++|||+|||+++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4669999999999999999999999999999999965 4567899999999999999999999999999999999999
Q ss_pred cCCCC
Q 023820 81 HGGRG 85 (276)
Q Consensus 81 ~~~~~ 85 (276)
.....
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 86554
No 75
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.82 E-value=7.5e-20 Score=128.40 Aligned_cols=83 Identities=19% Similarity=0.346 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCcc---CCceEE
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDF---DGHRLR 76 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~---~g~~i~ 76 (276)
..+.++|||+|||+++++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..+ .|++|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 46789999999999999999999999999999999966 367899999999999999999999999987 899999
Q ss_pred EEEccCCCC
Q 023820 77 VELAHGGRG 85 (276)
Q Consensus 77 v~~a~~~~~ 85 (276)
|.++.....
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999986543
No 76
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.82 E-value=3.3e-20 Score=130.30 Aligned_cols=79 Identities=16% Similarity=0.210 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G-~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
...++|||+|||+++++++|+++|++|| +|..+.+.. ..++|||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4568999999999999999999999999 999998853 35789999999999999999999999999999999999875
Q ss_pred C
Q 023820 83 G 83 (276)
Q Consensus 83 ~ 83 (276)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 77
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=7.5e-20 Score=124.44 Aligned_cols=78 Identities=32% Similarity=0.567 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
..+.++|||+|||+++++++|+++|++||.|..|.+. ++||||+|.+.++|+.|+..|||..|.|+.|.|.++..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 3578999999999999999999999999999999998 56999999999999999999999999999999999987
Q ss_pred CCC
Q 023820 83 GRG 85 (276)
Q Consensus 83 ~~~ 85 (276)
...
T Consensus 81 ~~~ 83 (90)
T 2dnp_A 81 GQK 83 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 78
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.82 E-value=4.7e-20 Score=124.94 Aligned_cols=80 Identities=28% Similarity=0.556 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCC---C-CCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP---R-PPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~---~-~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
..+++|||+|||+++++++|+++|++||.|..|.+..+. . ++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 357899999999999999999999999999999996543 2 789999999999999999999999999999999999
Q ss_pred ccCC
Q 023820 80 AHGG 83 (276)
Q Consensus 80 a~~~ 83 (276)
+...
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8653
No 79
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3e-20 Score=130.42 Aligned_cols=81 Identities=27% Similarity=0.504 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC---CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.++++|||+|||+.+++++|+++|++||.|..|.|..+ +.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45688999999999999999999999999999999654 667899999999999999999999999999999999999
Q ss_pred cCCC
Q 023820 81 HGGR 84 (276)
Q Consensus 81 ~~~~ 84 (276)
....
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 7643
No 80
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=9.8e-20 Score=128.90 Aligned_cols=82 Identities=22% Similarity=0.464 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC---CCCCceEEEEecCHHHHHHHHHhcC------CCccCCce
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRD------GYDFDGHR 74 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~e~a~~A~~~ln------g~~~~g~~ 74 (276)
.++++|||+|||+++++++|+++|++||+|..|.|..+ +.++|||||+|.+.++|+.|+..|| |..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 56899999999999999999999999999999999754 5789999999999999999999999 99999999
Q ss_pred EEEEEccCCCC
Q 023820 75 LRVELAHGGRG 85 (276)
Q Consensus 75 i~v~~a~~~~~ 85 (276)
|.|.++.....
T Consensus 93 l~v~~a~~~~~ 103 (111)
T 1x4h_A 93 LKVDLAVTRDE 103 (111)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999986543
No 81
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3e-20 Score=129.72 Aligned_cols=82 Identities=34% Similarity=0.574 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.++++|||+|||+.+++++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 5679999999999999999999999999999999965 4577899999999999999999999999999999999999
Q ss_pred cCCCC
Q 023820 81 HGGRG 85 (276)
Q Consensus 81 ~~~~~ 85 (276)
.....
T Consensus 93 ~~~~~ 97 (103)
T 2cq0_A 93 KPSTN 97 (103)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 86543
No 82
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7.4e-20 Score=126.28 Aligned_cols=79 Identities=25% Similarity=0.475 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccC--CceEEEEEc
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD--GHRLRVELA 80 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~--g~~i~v~~a 80 (276)
..++++|||+|||+++++++|+++|++||.|..|.+... ++||||+|.+.++|++|+..|||..|. |+.|.|.|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 357799999999999999999999999999999999743 789999999999999999999999999 999999999
Q ss_pred cCCC
Q 023820 81 HGGR 84 (276)
Q Consensus 81 ~~~~ 84 (276)
....
T Consensus 91 ~~~~ 94 (97)
T 1why_A 91 KSGP 94 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 83
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-19 Score=128.58 Aligned_cols=83 Identities=20% Similarity=0.288 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
..++++|||+|||+++++++|+++|++||.|..|.|.. ++.+++||||+|.+.++|+.|+..|||..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 36789999999999999999999999999999999965 4566899999999999999999999999999999999998
Q ss_pred cCCCC
Q 023820 81 HGGRG 85 (276)
Q Consensus 81 ~~~~~ 85 (276)
.....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 75443
No 84
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.6e-20 Score=127.39 Aligned_cols=79 Identities=35% Similarity=0.570 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC---CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.++++|||+|||+.+++++|+++|++||.|..|.+..+ +.++|||||+|.+.++|++|+..|||..|.|++|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 56789999999999999999999999999999999654 567899999999999999999999999999999999998
Q ss_pred cC
Q 023820 81 HG 82 (276)
Q Consensus 81 ~~ 82 (276)
..
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 85
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5e-20 Score=128.07 Aligned_cols=78 Identities=17% Similarity=0.365 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC--CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~--~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
.+.++|||+|||+++|+++|.++|++||+|..|.|..+ +.++|||||+|.+.++|+.|+. +||..|.|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 45689999999999999999999999999999999653 6789999999999999999999 99999999999999876
Q ss_pred C
Q 023820 82 G 82 (276)
Q Consensus 82 ~ 82 (276)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 86
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=9.5e-20 Score=127.65 Aligned_cols=82 Identities=28% Similarity=0.383 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCC---ceEEEE
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG---HRLRVE 78 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g---~~i~v~ 78 (276)
.++++|||+|||+++++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.| ++|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 4679999999999999999999999999999999965 45668999999999999999999999999998 999999
Q ss_pred EccCCCC
Q 023820 79 LAHGGRG 85 (276)
Q Consensus 79 ~a~~~~~ 85 (276)
++.....
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9987553
No 87
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=4.7e-20 Score=126.81 Aligned_cols=80 Identities=28% Similarity=0.496 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC--CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~--~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
..+.++|||+|||+.+++++|+++|++||+|..|.|..+ +.++|||||+|.+.++|++|+..|||..|.|++|.|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 356799999999999999999999999999999999653 566899999999999999999999999999999999998
Q ss_pred cC
Q 023820 81 HG 82 (276)
Q Consensus 81 ~~ 82 (276)
..
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 88
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=127.34 Aligned_cols=79 Identities=23% Similarity=0.445 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
.+.++|||+|||+.+++++|+++|++||.|..|.|..+ +|||||+|.+.++|+.|+..|||..|.|+.|.|.|+...
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 56789999999999999999999999999999999854 899999999999999999999999999999999999875
Q ss_pred CC
Q 023820 84 RG 85 (276)
Q Consensus 84 ~~ 85 (276)
..
T Consensus 100 ~~ 101 (109)
T 1x4g_A 100 PD 101 (109)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 89
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.8e-20 Score=127.50 Aligned_cols=81 Identities=16% Similarity=0.260 Sum_probs=73.0
Q ss_pred CCCCCCeEEE--cCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCcc-----CCce
Q 023820 2 SSRASRTLYV--GNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF-----DGHR 74 (276)
Q Consensus 2 ~~~~~~~l~v--~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~-----~g~~ 74 (276)
++.|+++||| +||++++++++|+++|++||+|..|.|.. .+|||||+|.+.++|++|++.|||..| .|++
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4678999999 77999999999999999999999998863 479999999999999999999999988 6899
Q ss_pred EEEEEccCCCC
Q 023820 75 LRVELAHGGRG 85 (276)
Q Consensus 75 i~v~~a~~~~~ 85 (276)
|.|.++...+.
T Consensus 98 l~v~~a~~~p~ 108 (114)
T 2cq2_A 98 LYLNFVEKVQW 108 (114)
T ss_dssp CEEEEESCCCC
T ss_pred EEEEecccCcc
Confidence 99999876543
No 90
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=5.3e-20 Score=133.46 Aligned_cols=82 Identities=35% Similarity=0.590 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC---CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
..++++|||+|||+.+++++|+++|++||+|..|.|..+ +..+|||||+|.+.++|++|+..|||..|.|++|.|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999999754 67899999999999999999999999999999999999
Q ss_pred ccCCC
Q 023820 80 AHGGR 84 (276)
Q Consensus 80 a~~~~ 84 (276)
+....
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 87643
No 91
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=126.97 Aligned_cols=83 Identities=22% Similarity=0.385 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCc-cCCceEEEE
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYK-YGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYD-FDGHRLRVE 78 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~-~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~-~~g~~i~v~ 78 (276)
..++++|||+|||+++++++|+++|++ ||.|..|.|.. ++.++|||||+|.+.++|++|+..|||.. |.|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 467899999999999999999999999 99999999965 46678999999999999999999999999 999999999
Q ss_pred EccCCCC
Q 023820 79 LAHGGRG 85 (276)
Q Consensus 79 ~a~~~~~ 85 (276)
++.....
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9976543
No 92
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=125.27 Aligned_cols=78 Identities=35% Similarity=0.531 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
.+.++|||+|||+.+++++|+++|++||+|..|.+.. .++||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~---~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK---DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET---TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec---CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 5678999999999999999999999999999999983 4899999999999999999999999999999999999765
Q ss_pred C
Q 023820 84 R 84 (276)
Q Consensus 84 ~ 84 (276)
.
T Consensus 90 ~ 90 (99)
T 2cpj_A 90 A 90 (99)
T ss_dssp S
T ss_pred C
Confidence 4
No 93
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=1.2e-20 Score=128.37 Aligned_cols=78 Identities=17% Similarity=0.223 Sum_probs=67.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYG--PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G--~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
.+|||+|||+++++++|+++|++|| .|..+.+.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 999999865 56788999999999999999999999999999999999987
Q ss_pred CCC
Q 023820 82 GGR 84 (276)
Q Consensus 82 ~~~ 84 (276)
...
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 94
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=1.4e-19 Score=126.37 Aligned_cols=81 Identities=28% Similarity=0.529 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC---CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
..+.++|||+|||+++++++|+++|++|| |..|.|+.+ +.++|||||+|.+.++|++|+ .|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 46789999999999999999999999997 999999654 567899999999999999999 7999999999999999
Q ss_pred ccCCCC
Q 023820 80 AHGGRG 85 (276)
Q Consensus 80 a~~~~~ 85 (276)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 986543
No 95
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=8.3e-20 Score=126.52 Aligned_cols=79 Identities=29% Similarity=0.452 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccC
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~--------v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~ 71 (276)
..+.++|||+|||+++++++|+++|++||.|.. |.+.. ++.++|||||+|.+.++|+.|++.|||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 467899999999999999999999999999999 88865 3677899999999999999999999999999
Q ss_pred CceEEEEEcc
Q 023820 72 GHRLRVELAH 81 (276)
Q Consensus 72 g~~i~v~~a~ 81 (276)
|+.|.|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999874
No 96
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=7.3e-20 Score=129.31 Aligned_cols=78 Identities=27% Similarity=0.341 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
++.++|||+|||+.+++++|+++|++||.|..|.|. ..++||||+|.+.++|+.|+..|||..|.|++|.|.|+...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP---EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC---SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe---CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 456899999999999999999999999999999987 36789999999999999999999999999999999999764
Q ss_pred C
Q 023820 84 R 84 (276)
Q Consensus 84 ~ 84 (276)
.
T Consensus 85 ~ 85 (111)
T 1whx_A 85 V 85 (111)
T ss_dssp T
T ss_pred c
Confidence 3
No 97
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.81 E-value=1.6e-19 Score=124.44 Aligned_cols=76 Identities=26% Similarity=0.545 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 3 SRASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 3 ~~~~~~l~v~nL~~-~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
..++++|||+|||+ ++++++|+++|++||.|..|.+. +|||||+|.+.++|++|+..|||..+.|+.|.|.++.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 46789999999998 99999999999999999999985 8999999999999999999999999999999999987
Q ss_pred CC
Q 023820 82 GG 83 (276)
Q Consensus 82 ~~ 83 (276)
..
T Consensus 94 ~~ 95 (97)
T 2xnq_A 94 SN 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 98
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.9e-20 Score=130.87 Aligned_cols=81 Identities=23% Similarity=0.360 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEecCC------CCCceEEEEecCHHHHHHHHHhcCCCccCCce
Q 023820 4 RASRTLYVGNLPGDIREREVE---DLFYKYGPIAHIDLKIPP------RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~---~~F~~~G~v~~v~~~~~~------~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~ 74 (276)
...++|||+|||+++++++|. ++|++||+|..|.|..+. .++|||||+|.+.++|++|+..|||..|+|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 457899999999999999999 999999999999996543 45689999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 023820 75 LRVELAHGGR 84 (276)
Q Consensus 75 i~v~~a~~~~ 84 (276)
|.|.++....
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998654
No 99
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=9.1e-20 Score=128.85 Aligned_cols=81 Identities=26% Similarity=0.466 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.++++|||+|||+.+++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 4668999999999999999999999999999999964 4677899999999999999999999999999999999999
Q ss_pred cCCC
Q 023820 81 HGGR 84 (276)
Q Consensus 81 ~~~~ 84 (276)
....
T Consensus 104 ~~~~ 107 (110)
T 1oo0_B 104 FVKG 107 (110)
T ss_dssp EESS
T ss_pred ccCC
Confidence 7643
No 100
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=7.6e-20 Score=128.58 Aligned_cols=81 Identities=28% Similarity=0.548 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
..++++|||+|||+.+++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35779999999999999999999999999999999964 456789999999999999999999999999999999999
Q ss_pred ccCC
Q 023820 80 AHGG 83 (276)
Q Consensus 80 a~~~ 83 (276)
+...
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8754
No 101
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=128.55 Aligned_cols=83 Identities=28% Similarity=0.489 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccC
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIA--------HIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~--------~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~ 71 (276)
..++++|||+|||+.+++++|+++|++||.|. .|.|.. ++.++|||||+|.+.++|++|+..|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 35789999999999999999999999999998 588864 4677899999999999999999999999999
Q ss_pred CceEEEEEccCCCC
Q 023820 72 GHRLRVELAHGGRG 85 (276)
Q Consensus 72 g~~i~v~~a~~~~~ 85 (276)
|+.|.|.++.....
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999987554
No 102
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=122.44 Aligned_cols=76 Identities=30% Similarity=0.518 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhc-CCCccCCceEEEEEcc
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR-DGYDFDGHRLRVELAH 81 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~l-ng~~~~g~~i~v~~a~ 81 (276)
..+.++|||+|||+.+++++|+++|++||.|..|.+.. .+|||||+|.+.++|+.|+..| ||..+.|++|.|.|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 35679999999999999999999999999999999984 4789999999999999999998 9999999999999974
No 103
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.81 E-value=1e-19 Score=127.89 Aligned_cols=78 Identities=26% Similarity=0.472 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
.++++|||+|||+.+++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 4679999999999999999999999999999999964 46678999999999999999999999999999999999975
No 104
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=8e-20 Score=130.81 Aligned_cols=79 Identities=22% Similarity=0.495 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
..+.++|||+|||+++++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|+|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 35679999999999999999999999999999999965 367899999999999999999999999999999999998
Q ss_pred cc
Q 023820 80 AH 81 (276)
Q Consensus 80 a~ 81 (276)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 105
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=128.63 Aligned_cols=82 Identities=26% Similarity=0.451 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCe----eEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPI----AHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v----~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
.++++|||+|||+++|+++|+++|++||.| ..+.+. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 467999999999999999999999999998 555555 778899999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 023820 80 AHGGRGR 86 (276)
Q Consensus 80 a~~~~~~ 86 (276)
+......
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9876543
No 106
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.81 E-value=1.3e-19 Score=131.31 Aligned_cols=83 Identities=27% Similarity=0.485 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.++++|||+|||+.+|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 4678999999999999999999999999999999964 4677899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 023820 81 HGGRGR 86 (276)
Q Consensus 81 ~~~~~~ 86 (276)
......
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 865543
No 107
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.5e-19 Score=123.35 Aligned_cols=77 Identities=30% Similarity=0.452 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~--G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
.++++|||+|||+++++++|+++|++| |.|..|.+. ++||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 567999999999999999999999999 999999886 7899999999999999999999999999999999998
Q ss_pred CCCC
Q 023820 82 GGRG 85 (276)
Q Consensus 82 ~~~~ 85 (276)
....
T Consensus 88 ~~~~ 91 (99)
T 2cpd_A 88 PVDK 91 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 108
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.81 E-value=3.4e-20 Score=128.56 Aligned_cols=79 Identities=24% Similarity=0.415 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCC------CCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCC-c
Q 023820 4 RASRTLYVGNLPG------DIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG-H 73 (276)
Q Consensus 4 ~~~~~l~v~nL~~------~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g-~ 73 (276)
..+++|||+|||+ ++++++|+++|++||.|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3578999999999 999999999999999999999964 36789999999999999999999999999999 9
Q ss_pred eEEEEEccC
Q 023820 74 RLRVELAHG 82 (276)
Q Consensus 74 ~i~v~~a~~ 82 (276)
.|.|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999864
No 109
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.1e-19 Score=125.09 Aligned_cols=78 Identities=24% Similarity=0.500 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 3 SRASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 3 ~~~~~~l~v~nL~~-~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
..++++|||+|||+ .+++++|+++|++||.|..|.+. +|||||+|.+.++|+.|+..|||..+.|++|.|.++.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 36889999999998 99999999999999999999996 7899999999999999999999999999999999998
Q ss_pred CCCC
Q 023820 82 GGRG 85 (276)
Q Consensus 82 ~~~~ 85 (276)
....
T Consensus 82 ~~~~ 85 (96)
T 2kvi_A 82 SNAR 85 (96)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6543
No 110
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=131.74 Aligned_cols=83 Identities=34% Similarity=0.665 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.+.++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5679999999999999999999999999999999965 3567899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 023820 81 HGGRGR 86 (276)
Q Consensus 81 ~~~~~~ 86 (276)
......
T Consensus 120 ~~~~~~ 125 (139)
T 1u6f_A 120 ASGHQR 125 (139)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 876544
No 111
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=126.31 Aligned_cols=80 Identities=26% Similarity=0.436 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEec-CCCCCceEEEEecCHHHHHHHHHhcCCCccCCc-eE
Q 023820 4 RASRTLYVGNLPGDI------REREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-RL 75 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~------t~~~l~~~F~~~G~v~~v~~~~-~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~-~i 75 (276)
..+++|||+|||+.+ ++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|+.|+..|||..|.|+ +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 456899999999999 7899999999999999999863 567899999999999999999999999999999 99
Q ss_pred EEEEccCC
Q 023820 76 RVELAHGG 83 (276)
Q Consensus 76 ~v~~a~~~ 83 (276)
.|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998754
No 112
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=2e-19 Score=121.50 Aligned_cols=77 Identities=23% Similarity=0.533 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
..+.++|||+|||+.+++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|+. +++..|.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 46789999999999999999999999999999999964 36778999999999999999997 688899999999987
Q ss_pred c
Q 023820 80 A 80 (276)
Q Consensus 80 a 80 (276)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 113
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=125.37 Aligned_cols=81 Identities=27% Similarity=0.436 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
.++++|||+|||+++++++|+++|++||.|. +....++..+|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIK-VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEE-CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE-EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 5789999999999999999999999999883 222346778999999999999999999999999999999999999875
Q ss_pred CC
Q 023820 84 RG 85 (276)
Q Consensus 84 ~~ 85 (276)
..
T Consensus 92 ~~ 93 (101)
T 2fc9_A 92 GS 93 (101)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 114
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.80 E-value=1.7e-19 Score=126.77 Aligned_cols=77 Identities=32% Similarity=0.580 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
..++++|||+|||+++++++|+++|++||.|..|.+. +|||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3578999999999999999999999999999999998 89999999999999999999999999999999999876
Q ss_pred CC
Q 023820 83 GR 84 (276)
Q Consensus 83 ~~ 84 (276)
..
T Consensus 103 ~~ 104 (108)
T 2jvo_A 103 PA 104 (108)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 115
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.5e-19 Score=127.33 Aligned_cols=80 Identities=25% Similarity=0.494 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC-CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
.+.++|||+|||+++++++|+++|++||+|..|.+..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 56799999999999999999999999999999999653 45789999999999999999999999999999999999875
Q ss_pred C
Q 023820 83 G 83 (276)
Q Consensus 83 ~ 83 (276)
.
T Consensus 107 ~ 107 (109)
T 2err_A 107 R 107 (109)
T ss_dssp S
T ss_pred C
Confidence 4
No 116
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=2.7e-19 Score=121.45 Aligned_cols=78 Identities=23% Similarity=0.485 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
..++|||+|||+++++++|+++|++||.|..+.+.. ++.++|||||+|.+.++|++|+ .|||..|.|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 458999999999999999999999999999999964 4678999999999999999999 799999999999999987
Q ss_pred CC
Q 023820 82 GG 83 (276)
Q Consensus 82 ~~ 83 (276)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 117
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.7e-19 Score=124.16 Aligned_cols=83 Identities=24% Similarity=0.333 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEe-c---CCCCCceEEEEecCHHHHHHHHHhcC--CCccCCceE
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGP-IAHIDLK-I---PPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRL 75 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~-v~~v~~~-~---~~~~~g~afV~f~~~e~a~~A~~~ln--g~~~~g~~i 75 (276)
+.+.++|||+|||+.+++++|+++|+.||. |..|.+. . ++.++|||||+|.+.++|+.|+..|| +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 467899999999999999999999999998 9999986 3 34788999999999999999999996 589999999
Q ss_pred EEEEccCCCC
Q 023820 76 RVELAHGGRG 85 (276)
Q Consensus 76 ~v~~a~~~~~ 85 (276)
.|.|+.....
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 118
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=123.24 Aligned_cols=79 Identities=27% Similarity=0.413 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCC-CccCCceEEEEEc
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGP-IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG-YDFDGHRLRVELA 80 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~-v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng-~~~~g~~i~v~~a 80 (276)
+.+.++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|+..||| ..|.|+.|.|.++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 467899999999999999999999999999 6666663 488999999999999999999999 9999999999999
Q ss_pred cCCCC
Q 023820 81 HGGRG 85 (276)
Q Consensus 81 ~~~~~ 85 (276)
.....
T Consensus 81 ~~~~~ 85 (93)
T 2cqh_A 81 VSKKL 85 (93)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 86543
No 119
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.80 E-value=4.2e-19 Score=125.04 Aligned_cols=81 Identities=15% Similarity=0.363 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC---CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.+.++|||+|||+++++++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|++|+..+ |..|.|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 56799999999999999999999999999999999653 678999999999999999999966 59999999999999
Q ss_pred cCCCC
Q 023820 81 HGGRG 85 (276)
Q Consensus 81 ~~~~~ 85 (276)
.....
T Consensus 102 ~~~~~ 106 (109)
T 2rs2_A 102 FPRRA 106 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 86543
No 120
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.80 E-value=5.5e-19 Score=127.53 Aligned_cols=82 Identities=24% Similarity=0.426 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
.++++|||+|||+.+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 5678999999999999999999999999999999965 46788999999999999999999999999999999999998
Q ss_pred CCCC
Q 023820 82 GGRG 85 (276)
Q Consensus 82 ~~~~ 85 (276)
....
T Consensus 113 ~~~~ 116 (124)
T 2kt5_A 113 SQID 116 (124)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6544
No 121
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=124.04 Aligned_cols=79 Identities=28% Similarity=0.498 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
..+++|||+|||+.+++++|+++|++||.|. +.+.. +.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++...
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW-QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc-CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 3479999999999999999999999999996 55543 467899999999999999999999999999999999999764
Q ss_pred C
Q 023820 84 R 84 (276)
Q Consensus 84 ~ 84 (276)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 122
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=121.03 Aligned_cols=72 Identities=28% Similarity=0.505 Sum_probs=66.7
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEec-CCCCCceEEEEecCHHHHHHHHHhcCCCccCCc-eEEE
Q 023820 6 SRTLYVGNLPGDI------REREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-RLRV 77 (276)
Q Consensus 6 ~~~l~v~nL~~~~------t~~~l~~~F~~~G~v~~v~~~~-~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~-~i~v 77 (276)
+++|||+|||+.+ ++++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+ +|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 7799999999999999999863 567899999999999999999999999999999 8876
No 123
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=126.54 Aligned_cols=82 Identities=16% Similarity=0.314 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC---CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
..+.++|||+|||+.+++++|+++|++||+|..|.|..+ +.++|||||+|.+.++|++|+.. |+..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 467899999999999999999999999999999999653 56789999999999999999997 99999999999999
Q ss_pred ccCCCC
Q 023820 80 AHGGRG 85 (276)
Q Consensus 80 a~~~~~ 85 (276)
+.....
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 876554
No 124
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=4e-19 Score=133.54 Aligned_cols=82 Identities=34% Similarity=0.500 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC---CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.++++|||+|||+.+|+++|+++|++||+|..|.|+.+ +.+++||||+|.+.++|++|+..||+..|.|+.|.|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46799999999999999999999999999999999654 567899999999999999999999999999999999999
Q ss_pred cCCCC
Q 023820 81 HGGRG 85 (276)
Q Consensus 81 ~~~~~ 85 (276)
.....
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 86543
No 125
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.6e-19 Score=125.49 Aligned_cols=76 Identities=24% Similarity=0.431 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
...++|||+|||+++++++|+++|++||.|..|.+. .++|||||+|.+.++|..|+..|||..|.|+.|.|.|+..
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 346899999999999999999999999999999997 5689999999999999999999999999999999999864
No 126
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.2e-20 Score=124.30 Aligned_cols=79 Identities=20% Similarity=0.359 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
+.++++|||+|||+++++++|+++|++||+|..|.|.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35789999999999999999999999999999999965 367789999999999999999999999999999998866
Q ss_pred cc
Q 023820 80 AH 81 (276)
Q Consensus 80 a~ 81 (276)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 127
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.79 E-value=3e-19 Score=130.13 Aligned_cols=82 Identities=18% Similarity=0.338 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--EEEec---CCCCCceEEEEecCHHHHHHHHHhcCCC----ccCCc
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAH--IDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGY----DFDGH 73 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~--v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~----~~~g~ 73 (276)
+.++++|||+|||+++|+++|+++|++||.|.. |.|+. ++.++|||||+|.+. +|.+|+..|||. .|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 467899999999999999999999999999966 88854 567899999999999 999999999999 99999
Q ss_pred eEEEEEccCCCC
Q 023820 74 RLRVELAHGGRG 85 (276)
Q Consensus 74 ~i~v~~a~~~~~ 85 (276)
.|.|.++.....
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987543
No 128
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.79 E-value=2.8e-19 Score=133.77 Aligned_cols=78 Identities=15% Similarity=0.257 Sum_probs=71.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYG--PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G--~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
..++|||+|||+++++++|+++|+.|| .|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999964 567889999999999999999999999999999999999
Q ss_pred ccC
Q 023820 80 AHG 82 (276)
Q Consensus 80 a~~ 82 (276)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 853
No 129
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-19 Score=125.13 Aligned_cols=79 Identities=28% Similarity=0.440 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
.+.++|||+|||+.+++++|+++|++||.|..+ ..++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 567999999999999999999999999999877 556778999999999999999999999999999999999998765
Q ss_pred C
Q 023820 84 R 84 (276)
Q Consensus 84 ~ 84 (276)
.
T Consensus 92 ~ 92 (96)
T 1fjc_A 92 G 92 (96)
T ss_dssp C
T ss_pred C
Confidence 4
No 130
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=2e-19 Score=117.92 Aligned_cols=72 Identities=21% Similarity=0.377 Sum_probs=67.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
+|||+|||+++++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|+. |||..|.|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999964 46788999999999999999998 9999999999999875
No 131
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=121.62 Aligned_cols=81 Identities=20% Similarity=0.378 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC---CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
..+.++|||+|||+.+++++|+++|++||+|..|.|..+ +.++|||||+|.+.++|++|+. ++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 367899999999999999999999999999999999653 6778999999999999999999 47789999999999
Q ss_pred ccCCCC
Q 023820 80 AHGGRG 85 (276)
Q Consensus 80 a~~~~~ 85 (276)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 987654
No 132
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.79 E-value=2e-19 Score=124.70 Aligned_cols=78 Identities=27% Similarity=0.535 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec----CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI----PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~----~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
.+.++|||+|||+++++++|+++|+.|| |..|.|.. ++.++|||||+|.+.++|++|+ .|||..|.|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 5679999999999999999999999999 99999954 4678999999999999999999 7999999999999999
Q ss_pred ccCC
Q 023820 80 AHGG 83 (276)
Q Consensus 80 a~~~ 83 (276)
+...
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8754
No 133
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.9e-19 Score=124.94 Aligned_cols=81 Identities=33% Similarity=0.701 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.+.++|||+|||+.+++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 3568999999999999999999999999999999964 4567899999999999999999999999999999999998
Q ss_pred cCCC
Q 023820 81 HGGR 84 (276)
Q Consensus 81 ~~~~ 84 (276)
....
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 7543
No 134
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=2.9e-19 Score=130.68 Aligned_cols=82 Identities=35% Similarity=0.571 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.++++|||+|||+.+++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.|+
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4568999999999999999999999999999999964 4678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 023820 81 HGGRG 85 (276)
Q Consensus 81 ~~~~~ 85 (276)
.....
T Consensus 125 ~~~~~ 129 (135)
T 2lea_A 125 RYGRP 129 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 86554
No 135
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.79 E-value=5.2e-19 Score=124.88 Aligned_cols=75 Identities=31% Similarity=0.651 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 5 ASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 5 ~~~~l~v~nL~~~-~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
++++|||+|||+. +++++|+++|++||+|..|.+. ++||||+|.+.++|+.|+..|||..|.|+.|.|.++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH-----KGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE-----TTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4589999999999 9999999999999999999994 899999999999999999999999999999999999754
Q ss_pred C
Q 023820 84 R 84 (276)
Q Consensus 84 ~ 84 (276)
.
T Consensus 101 ~ 101 (110)
T 1wf1_A 101 K 101 (110)
T ss_dssp C
T ss_pred C
Confidence 3
No 136
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.79 E-value=1.1e-18 Score=131.33 Aligned_cols=82 Identities=35% Similarity=0.571 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.+.++|||+|||+.+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|+.|+..|||..|.|++|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3578999999999999999999999999999999965 5678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 023820 81 HGGRG 85 (276)
Q Consensus 81 ~~~~~ 85 (276)
.....
T Consensus 148 ~~~~~ 152 (158)
T 2kn4_A 148 RYGRP 152 (158)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 86543
No 137
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=9.9e-19 Score=116.19 Aligned_cols=76 Identities=26% Similarity=0.335 Sum_probs=67.8
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHHhhc-CCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEE
Q 023820 4 RASRT-LYVGNLPGDIRERE----VEDLFYKY-GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (276)
Q Consensus 4 ~~~~~-l~v~nL~~~~t~~~----l~~~F~~~-G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v 77 (276)
.|+.| |||+|||..+++++ |.++|++| |+|.+| + .|+|||+|.+.++|+.|++.|||..|.|++|+|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----T---GCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----C---TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----e---cCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 46777 99999999999998 55899999 599998 2 299999999999999999999999999999999
Q ss_pred EEccCCCCC
Q 023820 78 ELAHGGRGR 86 (276)
Q Consensus 78 ~~a~~~~~~ 86 (276)
.+|+.....
T Consensus 79 ~~A~~~sd~ 87 (96)
T 2diu_A 79 SFTPKNREL 87 (96)
T ss_dssp ESSCCSCCC
T ss_pred EecCCCcce
Confidence 999876543
No 138
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-19 Score=125.14 Aligned_cols=80 Identities=24% Similarity=0.341 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---cCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~---~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
...++|||+|||+.+++++|+++|++||.|..+.++ .++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 456899999999999999999999999999765553 35667899999999999999999999999999999999998
Q ss_pred cCC
Q 023820 81 HGG 83 (276)
Q Consensus 81 ~~~ 83 (276)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 653
No 139
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=8.3e-19 Score=119.49 Aligned_cols=80 Identities=18% Similarity=0.314 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
..+.++|||+|||+++++++|+++|+.| .|..|.|.. ++.++|||||+|.+.++|++|+. |||..|.|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3567999999999999999999999999 999999965 45678999999999999999999 9999999999999999
Q ss_pred cCCC
Q 023820 81 HGGR 84 (276)
Q Consensus 81 ~~~~ 84 (276)
....
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7653
No 140
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=124.51 Aligned_cols=80 Identities=19% Similarity=0.377 Sum_probs=73.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC---CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
+.++|||+|||+++++++|+++|++||.|..|.|..+ +.++|||||+|.+.++|+.|+.. |+..|.|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 3489999999999999999999999999999999654 67889999999999999999996 9999999999999998
Q ss_pred CCCC
Q 023820 82 GGRG 85 (276)
Q Consensus 82 ~~~~ 85 (276)
....
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7654
No 141
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.78 E-value=1e-19 Score=123.75 Aligned_cols=78 Identities=33% Similarity=0.612 Sum_probs=69.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC---CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
++|||+|||+++++++|+++|++||+|..|.+..+ +.++|||||+|.+.+ |+.|+..|||..+.|+.|.|.+|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999653 678999999999999 99999999999999999999999765
Q ss_pred CC
Q 023820 84 RG 85 (276)
Q Consensus 84 ~~ 85 (276)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 142
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.7e-19 Score=117.96 Aligned_cols=73 Identities=15% Similarity=0.393 Sum_probs=68.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
++|||+|||+++++++|+++|++||+|..+.+.. ++.++|||||+|.+.++|++|+..+| ..+.|++|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5899999999999999999999999999999965 36778999999999999999999998 9999999999986
No 143
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.78 E-value=2.4e-19 Score=132.75 Aligned_cols=82 Identities=26% Similarity=0.474 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCce
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~--------v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~ 74 (276)
..++++|||+|||+.+|+++|+++|+.||.|.. +.+..++.++|||||+|.+.++|..|+..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 357899999999999999999999999999875 555667889999999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 023820 75 LRVELAHGGR 84 (276)
Q Consensus 75 i~v~~a~~~~ 84 (276)
|.|.++....
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997654
No 144
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.78 E-value=7.8e-19 Score=129.54 Aligned_cols=77 Identities=35% Similarity=0.636 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC---CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.+.++|||+|||+.+++++|+++|++||+|..|.|..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.|.+|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 57899999999999999999999999999999999653 678999999999999999999999999999999999875
No 145
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.4e-19 Score=125.65 Aligned_cols=78 Identities=29% Similarity=0.469 Sum_probs=71.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC---CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
..++|||+|||+++++++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|++|+ .|||..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3479999999999999999999999999999999653 578899999999999999999 899999999999999987
Q ss_pred CC
Q 023820 82 GG 83 (276)
Q Consensus 82 ~~ 83 (276)
..
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 53
No 146
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=5.5e-19 Score=123.06 Aligned_cols=83 Identities=23% Similarity=0.370 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
..++++|||+|||+++++++|+++|+.|+.|.-+....++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 35789999999999999999999999886554443344667789999999999999999999999999999999999986
Q ss_pred CCC
Q 023820 83 GRG 85 (276)
Q Consensus 83 ~~~ 85 (276)
...
T Consensus 92 ~~~ 94 (102)
T 2fc8_A 92 KGE 94 (102)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 147
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.78 E-value=1.2e-19 Score=124.69 Aligned_cols=78 Identities=22% Similarity=0.305 Sum_probs=69.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.++++|||+|||+++++++|+++|++||.|..+.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3568999999999999999999999999998766643 4567899999999999999999999999999999999987
Q ss_pred c
Q 023820 81 H 81 (276)
Q Consensus 81 ~ 81 (276)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 148
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.6e-18 Score=118.40 Aligned_cols=77 Identities=26% Similarity=0.450 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
.++++|||+|| ++++++|+++|++||+|..|.|. .++|||||+|.+.++|++|+..|||..|.|+.|.|.|+...
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 56799999996 89999999999999999999995 67899999999999999999999999999999999999765
Q ss_pred CC
Q 023820 84 RG 85 (276)
Q Consensus 84 ~~ 85 (276)
..
T Consensus 88 ~~ 89 (97)
T 1x5p_A 88 PM 89 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 149
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=120.97 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAH-IDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~-v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.+.++|||+|||+.+++++|+++|++||.|.. |.|.. ++.++|||||+|.+.++|++|+.. |+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 46799999999999999999999999999987 77754 567899999999999999999996 999999999999998
Q ss_pred cCC
Q 023820 81 HGG 83 (276)
Q Consensus 81 ~~~ 83 (276)
...
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 654
No 150
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.78 E-value=4.3e-19 Score=120.05 Aligned_cols=77 Identities=32% Similarity=0.429 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
+++.++|||+|||+++++++|+++|++| .|..+.+. .++|||||+|.+.++|+.|+..|||..+.|++|.|.++..
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 4678999999999999999999999999 99999885 6789999999999999999999999999999999999865
Q ss_pred C
Q 023820 83 G 83 (276)
Q Consensus 83 ~ 83 (276)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 151
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=7e-19 Score=133.35 Aligned_cols=82 Identities=26% Similarity=0.454 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.++++|||+|||+.+++++|.++|++||.|..|.|+. ++.++|||||+|.+.++|+.||..|||..|.|+.|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4567899999999999999999999999999999964 4667899999999999999999999999999999999999
Q ss_pred cCCCC
Q 023820 81 HGGRG 85 (276)
Q Consensus 81 ~~~~~ 85 (276)
.....
T Consensus 150 ~~~~~ 154 (165)
T 1rk8_A 150 FVKGP 154 (165)
T ss_dssp EECC-
T ss_pred cCCCC
Confidence 86543
No 152
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.78 E-value=1e-18 Score=130.41 Aligned_cols=78 Identities=45% Similarity=0.745 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
.+.++|||+|||+.+++++|+++|++||.|..|.+..+ ++|||||+|.+.++|..|+..|||..|.|++|.|.++...
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 46799999999999999999999999999999999765 5899999999999999999999999999999999998764
No 153
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.4e-19 Score=124.85 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPI-AHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v-~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.+.++|||+|||+++|+++|+++|+.||.| ..|.|+. ++.++|||||+|.+.++|++||.. |+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 567999999999999999999999999999 7788854 567899999999999999999995 999999999999998
Q ss_pred cCC
Q 023820 81 HGG 83 (276)
Q Consensus 81 ~~~ 83 (276)
...
T Consensus 92 ~~~ 94 (114)
T 2cpy_A 92 TLE 94 (114)
T ss_dssp CHH
T ss_pred CHH
Confidence 643
No 154
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.3e-18 Score=117.99 Aligned_cols=78 Identities=22% Similarity=0.490 Sum_probs=67.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
...++|||+|||+++++++|+++|++||.|..|.+... ... ||||+|.+.++|++|+. |||..|.|+.|.|.++...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKD-KGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSS-SCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCC-CCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 46789999999999999999999999999999833221 122 99999999999999999 9999999999999987654
Q ss_pred C
Q 023820 84 R 84 (276)
Q Consensus 84 ~ 84 (276)
.
T Consensus 83 ~ 83 (94)
T 2e5g_A 83 E 83 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 155
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=1.7e-18 Score=124.93 Aligned_cols=78 Identities=28% Similarity=0.509 Sum_probs=72.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
.++|||+|||+++++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|+.|+ .|||..|.|+.|.|.++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 58999999999999999999999999999999964 5778999999999999999999 6999999999999999875
Q ss_pred CC
Q 023820 83 GR 84 (276)
Q Consensus 83 ~~ 84 (276)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 156
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=123.76 Aligned_cols=79 Identities=20% Similarity=0.360 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCcc--------CCc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDF--------DGH 73 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~--------~g~ 73 (276)
.+.++|||+|||+++++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|+.|+..|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 4679999999999999999999999999999999965 456789999999999999999999999999 578
Q ss_pred eEEEEEccC
Q 023820 74 RLRVELAHG 82 (276)
Q Consensus 74 ~i~v~~a~~ 82 (276)
+|.|.|+.+
T Consensus 103 ~l~v~~a~p 111 (114)
T 1x5o_A 103 PLLCKFSGP 111 (114)
T ss_dssp CBEEEECCC
T ss_pred ceeEEccCC
Confidence 899999874
No 157
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.77 E-value=6e-19 Score=115.68 Aligned_cols=72 Identities=19% Similarity=0.496 Sum_probs=66.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
+|||+|||+++++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|+.|+. +++..+.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999965 36789999999999999999999 6999999999999875
No 158
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=118.60 Aligned_cols=79 Identities=16% Similarity=0.370 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEE-EecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHID-LKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~-~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
..+++|||+|||+++++++|+++|++||.|..|. +..+. ..+.|||+|.+.++|+.|+..|||..|.|+.|.|.++..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~-~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS-ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS-SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3578999999999999999999999999999994 65443 345599999999999999999999999999999999976
Q ss_pred C
Q 023820 83 G 83 (276)
Q Consensus 83 ~ 83 (276)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 5
No 159
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-19 Score=124.97 Aligned_cols=80 Identities=20% Similarity=0.328 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--ecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~--~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
.+.++|||+|||+++++++|+++|++||.|..+.+ ..++.++|||||+|.+.++|++|++ |||..|.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 46789999999999999999999999998877222 2346789999999999999999999 99999999999999997
Q ss_pred CCC
Q 023820 82 GGR 84 (276)
Q Consensus 82 ~~~ 84 (276)
...
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 160
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.77 E-value=5.1e-18 Score=126.04 Aligned_cols=78 Identities=18% Similarity=0.203 Sum_probs=70.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCC--ceEEEEEccCCC
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELAHGGR 84 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g--~~i~v~~a~~~~ 84 (276)
.+|||+||++.+|+++|+++|++||+|..|.|... ..++||||+|.+.++|++|+..|||..|.| +.|+|+|++...
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k-~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES-SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 45889999999999999999999999999998532 357899999999999999999999999965 999999998764
Q ss_pred C
Q 023820 85 G 85 (276)
Q Consensus 85 ~ 85 (276)
.
T Consensus 126 l 126 (164)
T 1sjr_A 126 L 126 (164)
T ss_dssp C
T ss_pred c
Confidence 3
No 161
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=120.45 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
.+.++|||+|||+++|+++|+++|++||.| .|.|+. ++.++|||||+|.+.++|++||. +|+..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 567899999999999999999999999955 888854 56778999999999999999996 89999999999999887
Q ss_pred CCC
Q 023820 82 GGR 84 (276)
Q Consensus 82 ~~~ 84 (276)
...
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 162
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.77 E-value=1.9e-18 Score=132.08 Aligned_cols=80 Identities=25% Similarity=0.446 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
.++++|||+|||+.+++++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|++|.|.|+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4578999999999999999999999999999999965 46788999999999999999999999999999999999987
Q ss_pred CC
Q 023820 82 GG 83 (276)
Q Consensus 82 ~~ 83 (276)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 54
No 163
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.76 E-value=1.5e-18 Score=126.33 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEE
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGP---IAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~---v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~ 78 (276)
.+.++|||+|||+++|+++|+++|++||. |..|.|.. .+.++|||||+|.+.++|++|+. ||+..|.|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 45789999999999999999999999999 78888864 46778999999999999999999 99999999999999
Q ss_pred Ecc
Q 023820 79 LAH 81 (276)
Q Consensus 79 ~a~ 81 (276)
++.
T Consensus 121 ~a~ 123 (136)
T 2hgl_A 121 KSH 123 (136)
T ss_dssp ECC
T ss_pred ECC
Confidence 874
No 164
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.76 E-value=8.5e-19 Score=125.20 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEE
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGP---IAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~---v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~ 78 (276)
.+.++|||+|||+++|+++|+++|+.||. |..|.|.. ++.++|||||+|.+.++|++||. ||+..|.|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45789999999999999999999999999 88888854 46778999999999999999999 99999999999999
Q ss_pred Ecc
Q 023820 79 LAH 81 (276)
Q Consensus 79 ~a~ 81 (276)
++.
T Consensus 94 ~a~ 96 (118)
T 2db1_A 94 KSH 96 (118)
T ss_dssp EEC
T ss_pred ECC
Confidence 885
No 165
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.8e-18 Score=124.79 Aligned_cols=78 Identities=22% Similarity=0.295 Sum_probs=69.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEE-E--ecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHID-L--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~-~--~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.+.++|||+|||+++|+++|+++|+.||.|..+. + ..++.++|||||+|.+.++|++||. |||..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 4568999999999999999999999999987633 3 3467789999999999999999999 9999999999999998
Q ss_pred cC
Q 023820 81 HG 82 (276)
Q Consensus 81 ~~ 82 (276)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 166
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.75 E-value=9.1e-18 Score=120.21 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=68.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCce-EEEEecCHHHHHHHHHhcCCCccCC--ceEEEEEccCC
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGY-AFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELAHGG 83 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~-afV~f~~~e~a~~A~~~lng~~~~g--~~i~v~~a~~~ 83 (276)
..|||+||++.+|+++|.++|++||+|..|.+.. +.+|+ |||+|.+.++|+.|+..|||..|.| +.|+|+|++..
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~--~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT--KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE--ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc--CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 4566999999999999999999999999998864 23677 9999999999999999999999988 89999999865
Q ss_pred C
Q 023820 84 R 84 (276)
Q Consensus 84 ~ 84 (276)
.
T Consensus 107 ~ 107 (130)
T 3zzy_A 107 S 107 (130)
T ss_dssp S
T ss_pred c
Confidence 4
No 167
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=2.1e-18 Score=137.29 Aligned_cols=78 Identities=17% Similarity=0.233 Sum_probs=71.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYG--PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G--~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
..++|||+|||+++|+++|+++|++|| .|..|.|+. ++.++|||||+|.+.++|++||..|||..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999965 567889999999999999999999999999999999999
Q ss_pred ccC
Q 023820 80 AHG 82 (276)
Q Consensus 80 a~~ 82 (276)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 853
No 168
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.75 E-value=3.9e-18 Score=115.14 Aligned_cols=73 Identities=32% Similarity=0.622 Sum_probs=67.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccC
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKY----G-------PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~----G-------~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~ 71 (276)
+++.++|||+|||+++++++|+++|++| | .|..+.+.. .+|||||+|.+.++|++|+ .|||..|.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~---~kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---DKNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS---SSSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC---CCcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 4678999999999999999999999999 8 899999873 4899999999999999999 89999999
Q ss_pred CceEEEEE
Q 023820 72 GHRLRVEL 79 (276)
Q Consensus 72 g~~i~v~~ 79 (276)
|+.|.|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 169
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-18 Score=121.50 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEE
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGP---IAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~---v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v 77 (276)
....++|||+|||+++|+++|+++|+.||. |..|.|.. .+.++|||||+|.+.++|++|+. ||+..|.|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 356789999999999999999999999998 88898854 36789999999999999999999 9999999999999
Q ss_pred EEcc
Q 023820 78 ELAH 81 (276)
Q Consensus 78 ~~a~ 81 (276)
.++.
T Consensus 87 ~~a~ 90 (107)
T 2lmi_A 87 YEIN 90 (107)
T ss_dssp EECC
T ss_pred EECC
Confidence 9875
No 170
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=1e-17 Score=119.51 Aligned_cols=77 Identities=25% Similarity=0.251 Sum_probs=68.2
Q ss_pred CCCe--EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCce-EEEEecCHHHHHHHHHhcCCCccCC--ceEEEEE
Q 023820 5 ASRT--LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGY-AFVEFEEARDAEDAIRGRDGYDFDG--HRLRVEL 79 (276)
Q Consensus 5 ~~~~--l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~-afV~f~~~e~a~~A~~~lng~~~~g--~~i~v~~ 79 (276)
|+++ |||+||++.+++++|.++|++||.|..|.|... .|| |||+|.+.++|+.|+..|||..|.| +.|.|.+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 4455 578999999999999999999999999998642 486 9999999999999999999999987 6999999
Q ss_pred ccCCC
Q 023820 80 AHGGR 84 (276)
Q Consensus 80 a~~~~ 84 (276)
|+...
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 98654
No 171
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.4e-18 Score=118.05 Aligned_cols=74 Identities=22% Similarity=0.272 Sum_probs=68.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
.++|||+|||+++|+++|+++|+.| .|..|.|.. ++.++|||||+|.+.++|++||. ||+..|.|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECC
Confidence 4689999999999999999999999 899999964 46789999999999999999995 99999999999998875
No 172
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.74 E-value=8.3e-18 Score=113.77 Aligned_cols=75 Identities=23% Similarity=0.460 Sum_probs=62.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCc--cCCceEEEEEc
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD--FDGHRLRVELA 80 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~--~~g~~i~v~~a 80 (276)
..+.++|||+|||+++|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++ |+|.. +.|+.|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 357899999999999999999999999999999999764 78999999999999983 45544 55999999998
Q ss_pred cCC
Q 023820 81 HGG 83 (276)
Q Consensus 81 ~~~ 83 (276)
...
T Consensus 82 ~~k 84 (89)
T 3d2w_A 82 EPK 84 (89)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 173
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5e-18 Score=114.84 Aligned_cols=79 Identities=24% Similarity=0.436 Sum_probs=67.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
+.++++|||+|||+++++++|+++|++||+|..|.|..+ ++|||||+|.+.++|++|+.. +..+.|+.|.|.++..
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 467899999999999999999999999999999999754 689999999999999864331 3456899999999876
Q ss_pred CCC
Q 023820 83 GRG 85 (276)
Q Consensus 83 ~~~ 85 (276)
...
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 174
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-16 Score=112.03 Aligned_cols=78 Identities=49% Similarity=0.918 Sum_probs=68.4
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccc-eeeEEeeecc
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF-SRAYVRVREY 184 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~-~~~~i~~~~~ 184 (276)
...+|||+|||..+++++|+++|.+||+|..+.++.+ +||||+|.+.++|++|++.|++..+.|+. ....|.|..+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 3455999999999999999999999999999999887 79999999999999999999999999833 2356777766
Q ss_pred cC
Q 023820 185 DH 186 (276)
Q Consensus 185 ~~ 186 (276)
..
T Consensus 91 ~~ 92 (108)
T 1x4c_A 91 GP 92 (108)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 175
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-19 Score=128.37 Aligned_cols=83 Identities=28% Similarity=0.425 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccC
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~--------v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~ 71 (276)
..++++|||+|||+.+++++|+++|++||.|.. |.|.. ++.++|||||+|.+.++|++|+..|||..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 357899999999999999999999999999998 77754 3678899999999999999999999999999
Q ss_pred CceEEEEEccCCCC
Q 023820 72 GHRLRVELAHGGRG 85 (276)
Q Consensus 72 g~~i~v~~a~~~~~ 85 (276)
|+.|.|.++.....
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999986543
No 176
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=2.6e-18 Score=125.50 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
.+.++|||+|||+++|+++|+++|++|| |..|.|+. ++.++|||||+|.+.++|++|| .+|+..|.|+.|.|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4568999999999999999999999999 67888854 4678999999999999999999 599999999999999887
Q ss_pred CCC
Q 023820 82 GGR 84 (276)
Q Consensus 82 ~~~ 84 (276)
...
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 644
No 177
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.73 E-value=1.5e-17 Score=119.06 Aligned_cols=76 Identities=26% Similarity=0.471 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
.++++|||+|| ++++++|+++|++||+|..|.+. .++|||||+|.+.++|+.|+..|||..|.|+.|.|.|+...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 56799999996 69999999999999999999996 67899999999999999999999999999999999999865
Q ss_pred C
Q 023820 84 R 84 (276)
Q Consensus 84 ~ 84 (276)
.
T Consensus 112 ~ 112 (121)
T 2bz2_A 112 P 112 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 178
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=4.3e-18 Score=121.75 Aligned_cols=77 Identities=23% Similarity=0.236 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCe----eEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEE
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPI----AHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v----~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v 77 (276)
.+.++|||+|||+++|+++|+++|++||.| ..|.|+. ++.++|||||+|.+.++|++||.. |+..|.|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 567899999999999999999999999986 5777754 577889999999999999999995 999999999999
Q ss_pred EEcc
Q 023820 78 ELAH 81 (276)
Q Consensus 78 ~~a~ 81 (276)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8764
No 179
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.73 E-value=2e-17 Score=115.09 Aligned_cols=81 Identities=20% Similarity=0.254 Sum_probs=71.7
Q ss_pred CCCCCCeEEEcCCCC-----CCCHHHHHHHHhhcCCeeEEEEecC----CCCCceEEEEecCHHHHHHHHHhcCCCccCC
Q 023820 2 SSRASRTLYVGNLPG-----DIREREVEDLFYKYGPIAHIDLKIP----PRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (276)
Q Consensus 2 ~~~~~~~l~v~nL~~-----~~t~~~l~~~F~~~G~v~~v~~~~~----~~~~g~afV~f~~~e~a~~A~~~lng~~~~g 72 (276)
+..++++|+|.||.. +-++++|+++|++||+|..|.|..+ +.++|+|||+|.+.++|++|+..|||..|+|
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 357899999999963 2378999999999999999999754 4679999999999999999999999999999
Q ss_pred ceEEEEEccC
Q 023820 73 HRLRVELAHG 82 (276)
Q Consensus 73 ~~i~v~~a~~ 82 (276)
+.|.|.++..
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999853
No 180
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.72 E-value=1.1e-17 Score=119.82 Aligned_cols=76 Identities=21% Similarity=0.258 Sum_probs=68.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCee--EEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEE
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIA--HIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~--~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~ 79 (276)
.+.++|||+|||+++|+++|+++|++| .|. .|.|.. ++.++|||||+|.+.++|++|+. +++..|.|+.|.|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 457899999999999999999999999 576 888854 46789999999999999999999 588999999999988
Q ss_pred cc
Q 023820 80 AH 81 (276)
Q Consensus 80 a~ 81 (276)
+.
T Consensus 118 a~ 119 (126)
T 2hgm_A 118 SS 119 (126)
T ss_dssp EC
T ss_pred CC
Confidence 75
No 181
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.72 E-value=5.9e-18 Score=117.79 Aligned_cols=79 Identities=23% Similarity=0.498 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
.++++|||+|||+++++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+. |+..+.|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 3568999999999999999999999999999999965 45678999999999999999999 9999999999999987
Q ss_pred CCC
Q 023820 82 GGR 84 (276)
Q Consensus 82 ~~~ 84 (276)
...
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 543
No 182
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.71 E-value=1.5e-17 Score=118.14 Aligned_cols=77 Identities=49% Similarity=0.938 Sum_probs=66.2
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceeccccee-eEEeeecc
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR-AYVRVREY 184 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~-~~i~~~~~ 184 (276)
...+|||+|||..+++++|+++|.+||+|..+.++.+ +||||+|.+.++|++|++.||+..+.|+... .++.+...
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 91 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence 3455999999999999999999999999999999877 8999999999999999999999999996532 24566654
Q ss_pred c
Q 023820 185 D 185 (276)
Q Consensus 185 ~ 185 (276)
.
T Consensus 92 ~ 92 (115)
T 3beg_B 92 G 92 (115)
T ss_dssp C
T ss_pred C
Confidence 4
No 183
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=8.6e-17 Score=114.11 Aligned_cols=75 Identities=33% Similarity=0.545 Sum_probs=63.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecC------CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEE
Q 023820 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP------PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~------~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~ 76 (276)
..++++|||+|||+++++++|+++|++||+|. +.++.+ +.++|||||+|.+.++|++|+..|++ ++|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEE
Confidence 36789999999999999999999999999999 766443 57799999999999999999998843 5666666
Q ss_pred EEEc
Q 023820 77 VELA 80 (276)
Q Consensus 77 v~~a 80 (276)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 6543
No 184
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.70 E-value=2.1e-17 Score=130.93 Aligned_cols=79 Identities=27% Similarity=0.428 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCC---------CHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCcc----
Q 023820 4 RASRTLYVGNLPGDI---------REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF---- 70 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~---------t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~---- 70 (276)
.++++|||+||+..+ ++++|+++|++||+|..|.|+ .++|||||+|.+.++|+.|++.|||..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~---~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV---ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE---GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE---CCCCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 567999999999998 799999999999999999997 3589999999999999999999999999
Q ss_pred --------CCceEEEEEccCCCC
Q 023820 71 --------DGHRLRVELAHGGRG 85 (276)
Q Consensus 71 --------~g~~i~v~~a~~~~~ 85 (276)
.|+.|.|.||...+.
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp STTGGGGGGSCCCEEEECC----
T ss_pred cccccccCCCCEEEEEEccCCCC
Confidence 899999999986543
No 185
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.70 E-value=3.7e-17 Score=129.15 Aligned_cols=78 Identities=24% Similarity=0.406 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec-CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccC
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~-~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~ 82 (276)
+.++|||+|||+.+|+++|+++|+.||.|..|.|.. .+.++|||||+|.+.++|++|+..|||..|.|++|.|.++..
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 457899999999999999999999999999999965 345689999999999999999999999999999999999874
No 186
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.70 E-value=5.1e-17 Score=123.01 Aligned_cols=78 Identities=24% Similarity=0.475 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.++++|||+|||+.+++++|.++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.||
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 5678999999999999999999999999999999964 4677899999999999999999999999999999999998
Q ss_pred c
Q 023820 81 H 81 (276)
Q Consensus 81 ~ 81 (276)
.
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 5
No 187
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.70 E-value=1.1e-16 Score=121.11 Aligned_cols=133 Identities=16% Similarity=0.128 Sum_probs=68.5
Q ss_pred EEecCHHHHHHHHHhcCCCccC--CceEEEEEccCCCCCCCCCCC-CCCC-CCCCCCCCCCCCcEEEeCCCCCCCHHHHH
Q 023820 50 VEFEEARDAEDAIRGRDGYDFD--GHRLRVELAHGGRGRSSSDRH-SSHS-SGRGRGVSRRSEYLLVTGLPSSASWQDLK 125 (276)
Q Consensus 50 V~f~~~e~a~~A~~~lng~~~~--g~~i~v~~a~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 125 (276)
.+|++.++|..|+..|++.... |+.+.+.++............ .... ............+|||+|||..+++++|.
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7899999999999999987765 666666654321110000000 0000 01111122334459999999999999999
Q ss_pred HHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecccC
Q 023820 126 DHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 186 (276)
Q Consensus 126 ~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 186 (276)
++|.+||.|..|.++.+.. .+||||+|.+.++|..|+..|+|..|.| ..|.|..+..
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a~~ 151 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG----QTIQVDWCFV 151 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEESEE
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC----EEEEEEEecC
Confidence 9999999999999998853 4699999999999999999999999999 5666666544
No 188
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.70 E-value=8.4e-17 Score=127.25 Aligned_cols=82 Identities=28% Similarity=0.527 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.+.++|||+|||..+++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 4568999999999999999999999999999999965 4567899999999999999999999999999999999999
Q ss_pred cCCCC
Q 023820 81 HGGRG 85 (276)
Q Consensus 81 ~~~~~ 85 (276)
.....
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87643
No 189
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-16 Score=111.90 Aligned_cols=81 Identities=23% Similarity=0.379 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCC-----------HHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccC
Q 023820 3 SRASRTLYVGNLPGDIR-----------EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~t-----------~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~ 71 (276)
..++++|+|.||..... +++|+++|++||+|..|.| .+..++|||||+|.+.++|+.|+..|||..|.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 35789999999954432 5899999999999999976 45568999999999999999999999999999
Q ss_pred CceEEEEEccCCC
Q 023820 72 GHRLRVELAHGGR 84 (276)
Q Consensus 72 g~~i~v~~a~~~~ 84 (276)
|++|.|.++....
T Consensus 91 gr~l~v~~a~~~~ 103 (112)
T 2dit_A 91 GRQITAQAWDGTT 103 (112)
T ss_dssp TEECEEEECCSCC
T ss_pred CcEEEEEEeCCCC
Confidence 9999999987654
No 190
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.69 E-value=7.2e-17 Score=117.89 Aligned_cols=118 Identities=17% Similarity=0.110 Sum_probs=69.6
Q ss_pred ceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHH
Q 023820 46 GYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLK 125 (276)
Q Consensus 46 g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 125 (276)
-++|++|.+...+..|+..++|....|..- +.+ ..+........+|||+|||..+++++|.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~------------------~~~~~~~~~~~~l~V~nLp~~~te~~L~ 65 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSY------------------GRPPPDVEGMTSLKVDNLTYRTSPDTLR 65 (135)
T ss_dssp -------------------------------CCS------------------CCSCSSGGGCCCEEEECCCSSCHHHHHH
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCc------------------CCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 367888888889999999888876555431 000 0011123345569999999999999999
Q ss_pred HHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecccC
Q 023820 126 DHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 186 (276)
Q Consensus 126 ~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 186 (276)
++|.+||.|..+.++.+. ..+||||+|.+.++|++|+..|++..+.| ..+.|.....
T Consensus 66 ~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g----~~l~V~~a~~ 126 (135)
T 2lea_A 66 RVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG----RELRVQMARY 126 (135)
T ss_dssp HHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS----SCCEEEECCC
T ss_pred HHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEECCC
Confidence 999999999999998764 45799999999999999999999999999 5666665544
No 191
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.68 E-value=6.2e-17 Score=113.75 Aligned_cols=75 Identities=23% Similarity=0.355 Sum_probs=66.5
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecC----HHH----HHHHHH--hcCCCc
Q 023820 7 RTLYVGNL----PGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEE----ARD----AEDAIR--GRDGYD 69 (276)
Q Consensus 7 ~~l~v~nL----~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~----~e~----a~~A~~--~lng~~ 69 (276)
+.|||+|| |+.+++++|+++|+.||+|..+.+.. ++.++|||||+|.+ +++ |..|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 99999999999999999999999965 56789999999996 433 788888 789999
Q ss_pred cCCceEEEEEcc
Q 023820 70 FDGHRLRVELAH 81 (276)
Q Consensus 70 ~~g~~i~v~~a~ 81 (276)
|+|+.|+|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999854
No 192
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.68 E-value=6.6e-17 Score=123.67 Aligned_cols=78 Identities=28% Similarity=0.450 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
.+.++|||+|||+.+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 356899999999999999999999999999887 667788999999999999999999999999999999999998754
No 193
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.68 E-value=6.7e-17 Score=122.61 Aligned_cols=78 Identities=22% Similarity=0.523 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
++++|||+|||+.+++++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|++ +||..|.|++|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 467999999999999999999999999999999964 46788999999999999999999 99999999999999987
Q ss_pred CC
Q 023820 82 GG 83 (276)
Q Consensus 82 ~~ 83 (276)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 194
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.67 E-value=1.1e-16 Score=122.07 Aligned_cols=76 Identities=28% Similarity=0.598 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
+.++|||+|||+.+++++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.||
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 468999999999999999999999999999999954 4567899999999999999999999999999999999987
No 195
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.67 E-value=1.8e-16 Score=123.63 Aligned_cols=81 Identities=27% Similarity=0.573 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a 80 (276)
.+.++|||+|||+.+++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4679999999999999999999999999999999964 4567899999999999999999999999999999999999
Q ss_pred cCCC
Q 023820 81 HGGR 84 (276)
Q Consensus 81 ~~~~ 84 (276)
....
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 196
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.66 E-value=3.2e-16 Score=109.88 Aligned_cols=77 Identities=29% Similarity=0.514 Sum_probs=69.0
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcC-CeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecc
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 184 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~ 184 (276)
....|||+|||+.+++++|+++|.+|| +|..+.+..+...|||||+|.+.++|++|++.|||..+.| ..|.|..+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G----r~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG----SVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETT----EEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEEC
Confidence 344599999999999999999999999 8999999766778999999999999999999999999999 67777766
Q ss_pred cC
Q 023820 185 DH 186 (276)
Q Consensus 185 ~~ 186 (276)
..
T Consensus 103 ~~ 104 (111)
T 2jvr_A 103 DN 104 (111)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 197
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=3.1e-16 Score=118.99 Aligned_cols=77 Identities=34% Similarity=0.578 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCC--ceEEEE
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVE 78 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g--~~i~v~ 78 (276)
.+.++|||+|||+.+++++|+++|++||.|..+.+.. ++.++|||||+|.+.++|..|+..|||..|.| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 4678999999999999999999999999999999965 45667999999999999999999999999988 999999
Q ss_pred Ec
Q 023820 79 LA 80 (276)
Q Consensus 79 ~a 80 (276)
||
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 198
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.65 E-value=2.8e-16 Score=119.97 Aligned_cols=76 Identities=22% Similarity=0.359 Sum_probs=69.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccC---CceEEEEE
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD---GHRLRVEL 79 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~---g~~i~v~~ 79 (276)
+.++|||+|||+.+|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..+. |++|.|.|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 568999999999999999999999999999999965 4566899999999999999999999998776 49999999
Q ss_pred c
Q 023820 80 A 80 (276)
Q Consensus 80 a 80 (276)
|
T Consensus 174 a 174 (175)
T 3nmr_A 174 A 174 (175)
T ss_dssp C
T ss_pred c
Confidence 7
No 199
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.65 E-value=1.1e-15 Score=105.39 Aligned_cols=76 Identities=22% Similarity=0.364 Sum_probs=67.5
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEee
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 181 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~ 181 (276)
...+|||+|||..+++++|.++|.+||+|..+.++.++. .|||||+|.+.++|++|++.|+|..+.| ..|.|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g----r~l~V 93 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS----KTIKV 93 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC----EEEEE
Confidence 345699999999999999999999999999999998754 3599999999999999999999999999 66776
Q ss_pred eccc
Q 023820 182 REYD 185 (276)
Q Consensus 182 ~~~~ 185 (276)
..++
T Consensus 94 ~~Ak 97 (99)
T 4fxv_A 94 SYAR 97 (99)
T ss_dssp EECC
T ss_pred EEee
Confidence 6553
No 200
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.65 E-value=3.3e-16 Score=121.89 Aligned_cols=81 Identities=23% Similarity=0.472 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
+.++|||+|||+++++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+.. +|..|.|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 468999999999999999999999999999999965 466789999999999999999995 8999999999999998
Q ss_pred CCCCC
Q 023820 82 GGRGR 86 (276)
Q Consensus 82 ~~~~~ 86 (276)
.....
T Consensus 182 ~k~~~ 186 (196)
T 1l3k_A 182 SKQEM 186 (196)
T ss_dssp -----
T ss_pred ChhHh
Confidence 66543
No 201
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.65 E-value=3.1e-15 Score=106.26 Aligned_cols=78 Identities=18% Similarity=0.292 Sum_probs=68.6
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC---CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEee
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 181 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~ 181 (276)
....+|||+|||..+++++|.++|.+||.|..+.+..+. ..+||||+|.+.++|++|++.|+|..+.| ..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g----~~l~V 80 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHG----KAIKV 80 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS----SBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----EEEEE
Confidence 345569999999999999999999999999999999875 44799999999999999999999999999 55666
Q ss_pred ecccC
Q 023820 182 REYDH 186 (276)
Q Consensus 182 ~~~~~ 186 (276)
..+..
T Consensus 81 ~~a~~ 85 (116)
T 2fy1_A 81 EQAKK 85 (116)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 66554
No 202
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-15 Score=105.02 Aligned_cols=79 Identities=9% Similarity=0.132 Sum_probs=68.7
Q ss_pred CCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCC--ceecccceeeEEe
Q 023820 103 VSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD--SEFRNAFSRAYVR 180 (276)
Q Consensus 103 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~--~~~~g~~~~~~i~ 180 (276)
.+....+|||+|||+.+++++|+++|.+||+|..+.++.+ ++||||+|++.++|..|++.|++ ..+.| ..+.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G----r~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRG----QPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETT----EECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEE
Confidence 4455677999999999999999999999999999999876 68999999999999999998864 68888 6777
Q ss_pred eecccCC
Q 023820 181 VREYDHR 187 (276)
Q Consensus 181 ~~~~~~~ 187 (276)
|..+..+
T Consensus 86 V~~A~~~ 92 (105)
T 1sjq_A 86 IQFSNHK 92 (105)
T ss_dssp BCCCSSS
T ss_pred EEEcCCC
Confidence 7766543
No 203
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.65 E-value=5.1e-16 Score=120.29 Aligned_cols=77 Identities=17% Similarity=0.353 Sum_probs=69.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~ 83 (276)
.++|||+|||+.+++++|.++|++||+|..|.|.. ++.++|||||+|.+.++|++|+..+ +..|.|++|.|.++...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 47999999999999999999999999999999965 4667899999999999999999855 56999999999998754
No 204
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.64 E-value=5.5e-16 Score=107.84 Aligned_cols=79 Identities=25% Similarity=0.436 Sum_probs=69.2
Q ss_pred CCCCCeEEEcCC--CCCCC--------HHHHHHHHhhcCCeeEEEEecCC-----CCCceEEEEecCHHHHHHHHHhcCC
Q 023820 3 SRASRTLYVGNL--PGDIR--------EREVEDLFYKYGPIAHIDLKIPP-----RPPGYAFVEFEEARDAEDAIRGRDG 67 (276)
Q Consensus 3 ~~~~~~l~v~nL--~~~~t--------~~~l~~~F~~~G~v~~v~~~~~~-----~~~g~afV~f~~~e~a~~A~~~lng 67 (276)
+.|+++|.|.|+ |..+. +++|+++|++||+|..|.|+.+. .++|+|||+|.++++|++|+..|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 468999999998 33443 36899999999999999997642 5689999999999999999999999
Q ss_pred CccCCceEEEEEcc
Q 023820 68 YDFDGHRLRVELAH 81 (276)
Q Consensus 68 ~~~~g~~i~v~~a~ 81 (276)
..|+|+.|.|.++.
T Consensus 82 ~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 82 RKFANRVVVTKYCD 95 (105)
T ss_dssp CEETTEECEEEEEC
T ss_pred CEeCCCEEEEEEeC
Confidence 99999999999875
No 205
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=8.4e-16 Score=126.57 Aligned_cols=75 Identities=23% Similarity=0.414 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccC-CceEEEEEcc
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAH 81 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~-g~~i~v~~a~ 81 (276)
++++|||+|||..+++++|+++|+.||.|..|.|..+. +|||||+|.+.++|.+|+..|||..|. |+.|.|.|++
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 67899999999999999999999999999999997433 589999999999999999999999999 9999999985
No 206
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.64 E-value=1.5e-15 Score=107.85 Aligned_cols=76 Identities=20% Similarity=0.299 Sum_probs=67.9
Q ss_pred CCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC--CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecc
Q 023820 107 SEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 184 (276)
Q Consensus 107 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~--~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~ 184 (276)
..+|||+|||..+++++|.++|.+||.|..|.++.+.. .+||||+|.+.++|++|++.|++..+.| ..|.|...
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g----~~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND----RKVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEEC
Confidence 45699999999999999999999999999999988864 4699999999999999999999999999 56667665
Q ss_pred cC
Q 023820 185 DH 186 (276)
Q Consensus 185 ~~ 186 (276)
..
T Consensus 81 ~~ 82 (115)
T 4f25_A 81 KS 82 (115)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 207
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.63 E-value=7.2e-16 Score=116.74 Aligned_cols=76 Identities=32% Similarity=0.604 Sum_probs=69.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec---CCCCCceEEEEecCHHHHHHHHHhcCCCccCCc--eEEEEE
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH--RLRVEL 79 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~--~i~v~~ 79 (276)
+.++|||+|||+.+++++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+ +|.|.|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 568999999999999999999999999999999965 456689999999999999999999999999996 488887
Q ss_pred c
Q 023820 80 A 80 (276)
Q Consensus 80 a 80 (276)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 208
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.63 E-value=2.3e-15 Score=99.07 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=65.3
Q ss_pred CCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecc
Q 023820 107 SEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 184 (276)
Q Consensus 107 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~ 184 (276)
+..|+|+||++.+++++|.++|.+||+|..+.+.. ++|||||+|.+.++|.+|++.||+..+.| ..|+|..+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g----r~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLAN----TTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETT----EEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECC----cEEEEEEC
Confidence 44599999999999999999999999999999866 68899999999999999999999999999 66666554
No 209
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.62 E-value=9.5e-16 Score=119.61 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccC-CceEEEEEcc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAH 81 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G-~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~-g~~i~v~~a~ 81 (276)
.++++|||+|||+.+++++|+++|+.|| .|..|.+..+ .+|+|||+|.+.++|.+|+..|||..+. |+.|.|.|+.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 3589999999999999999999999999 9999999643 3789999999999999999999999999 9999999986
Q ss_pred C
Q 023820 82 G 82 (276)
Q Consensus 82 ~ 82 (276)
.
T Consensus 196 ~ 196 (198)
T 1qm9_A 196 S 196 (198)
T ss_dssp C
T ss_pred c
Confidence 5
No 210
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=6e-15 Score=102.63 Aligned_cols=81 Identities=14% Similarity=0.186 Sum_probs=69.8
Q ss_pred CCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeec--CCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 103 VSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD--GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 103 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
......+|||+|||..+++++|.++|.+||.|..+.+..+ ...+||||+|.+.++|.+|+..|++..+.| ..+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 86 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT----KPLY 86 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS----SBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC----cEEE
Confidence 3345566999999999999999999999999999999987 334699999999999999999999999999 5666
Q ss_pred eecccCC
Q 023820 181 VREYDHR 187 (276)
Q Consensus 181 ~~~~~~~ 187 (276)
|.....+
T Consensus 87 V~~a~~~ 93 (103)
T 2d9p_A 87 VALAQRK 93 (103)
T ss_dssp EEECSSC
T ss_pred EEEeccc
Confidence 6665543
No 211
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=7.5e-15 Score=101.33 Aligned_cols=81 Identities=17% Similarity=0.182 Sum_probs=70.8
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
....+|||+|||..+++++|.++|.+||+|..+.+..+. ..+||||+|.+.++|++|+..|++..+.| ..+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 81 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG----RMLH 81 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS----CEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC----cEEE
Confidence 345569999999999999999999999999999998775 45799999999999999999999999999 6777
Q ss_pred eecccCCCC
Q 023820 181 VREYDHRRD 189 (276)
Q Consensus 181 ~~~~~~~r~ 189 (276)
|.....+..
T Consensus 82 V~~a~~~~~ 90 (99)
T 1whw_A 82 VLPSTIKKE 90 (99)
T ss_dssp EEECCCCST
T ss_pred EEEcCCCcc
Confidence 777665443
No 212
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.4e-15 Score=102.64 Aligned_cols=82 Identities=22% Similarity=0.230 Sum_probs=71.7
Q ss_pred CCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeE
Q 023820 103 VSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 178 (276)
Q Consensus 103 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 178 (276)
......+|||+|||..+++++|.++|.+||+|..+.++.+. ..+||||+|.+.++|++|++.|++..+.| ..
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 83 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----RT 83 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT----EE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----cE
Confidence 34456679999999999999999999999999999998773 45799999999999999999999999999 67
Q ss_pred EeeecccCCC
Q 023820 179 VRVREYDHRR 188 (276)
Q Consensus 179 i~~~~~~~~r 188 (276)
+.|.......
T Consensus 84 l~V~~a~~~~ 93 (102)
T 2cqb_A 84 IRVNLAKPMR 93 (102)
T ss_dssp EEEEECCCCC
T ss_pred EEEEeCCCCC
Confidence 7777766543
No 213
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.9e-14 Score=100.09 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=70.3
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC--CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEee
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 181 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~--~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~ 181 (276)
.....+|||+|||..+++++|.++|.+||.|..+.++.+.. .+||||+|.+.++|++|+..|++..+.| ..+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v 87 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG----RKIEV 87 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC----EEEEE
Confidence 34455699999999999999999999999999999988753 6799999999999999999999999999 66777
Q ss_pred ecccCC
Q 023820 182 REYDHR 187 (276)
Q Consensus 182 ~~~~~~ 187 (276)
.....+
T Consensus 88 ~~a~~~ 93 (103)
T 2cq3_A 88 NNATAR 93 (103)
T ss_dssp EECCSS
T ss_pred EEcccC
Confidence 766554
No 214
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-14 Score=101.70 Aligned_cols=80 Identities=15% Similarity=0.190 Sum_probs=70.0
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC-CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeee
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 182 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~ 182 (276)
.....+|||+|||..+++++|.++|.+||.|..+.+..+. ..+||||+|.+.++|++|++.|++..+.| ..|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~ 94 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG----YRLRVE 94 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEE
Confidence 3345569999999999999999999999999999997764 36799999999999999999999999999 677777
Q ss_pred cccCC
Q 023820 183 EYDHR 187 (276)
Q Consensus 183 ~~~~~ 187 (276)
.....
T Consensus 95 ~a~~~ 99 (109)
T 1x4a_A 95 FPRSG 99 (109)
T ss_dssp CCCCC
T ss_pred EcccC
Confidence 76554
No 215
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.7e-14 Score=100.30 Aligned_cols=80 Identities=11% Similarity=0.118 Sum_probs=70.3
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC--CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEee
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 181 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~--~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~ 181 (276)
.....+|||+|||..+++++|.++|.+||.|..|.+..+. ..+||||+|.+.++|.+|+..|++..+.| ..+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V 87 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG----KEVKV 87 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETT----EEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCC----CeEEE
Confidence 3445569999999999999999999999999999998874 34799999999999999999999999999 67777
Q ss_pred ecccCC
Q 023820 182 REYDHR 187 (276)
Q Consensus 182 ~~~~~~ 187 (276)
......
T Consensus 88 ~~a~~~ 93 (103)
T 2cqi_A 88 NWATTP 93 (103)
T ss_dssp EECCCT
T ss_pred EECCCC
Confidence 776654
No 216
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.62 E-value=5.8e-15 Score=103.67 Aligned_cols=77 Identities=16% Similarity=0.069 Sum_probs=68.3
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
.+..+|||+|||..+++++|.++|.+||.|..+.++.+.. .|||||+|.+.++|++|++.|||..+.| ..|.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g----r~i~ 79 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG----NIIH 79 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC----eEEE
Confidence 3456799999999999999999999999999999998864 3699999999999999999999999999 5666
Q ss_pred eeccc
Q 023820 181 VREYD 185 (276)
Q Consensus 181 ~~~~~ 185 (276)
|..+.
T Consensus 80 V~~a~ 84 (110)
T 3s8s_A 80 AQLDI 84 (110)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 66543
No 217
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.62 E-value=2.3e-15 Score=120.19 Aligned_cols=77 Identities=22% Similarity=0.376 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccC-CceEEEEEcc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAH 81 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G-~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~-g~~i~v~~a~ 81 (276)
.++++|||+|||+.+++++|+++|++|| .|..|.+.. ..+|||||+|.+.++|.+|+..|||..|. |+.|.|.|+.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ--KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS--SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE--CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 3579999999999999999999999999 999999954 24789999999999999999999999999 9999999987
Q ss_pred C
Q 023820 82 G 82 (276)
Q Consensus 82 ~ 82 (276)
.
T Consensus 227 ~ 227 (229)
T 2adc_A 227 S 227 (229)
T ss_dssp S
T ss_pred C
Confidence 5
No 218
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.61 E-value=2.9e-15 Score=108.19 Aligned_cols=77 Identities=19% Similarity=0.272 Sum_probs=67.0
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEee
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 181 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~ 181 (276)
...+|||+|||..+++++|.++|.+||.|..|.++.+. ..+||||+|.+.++|++|++.|++..+.| ..|.|
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v 96 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG----QPISV 96 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS----SBCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC----eEEEE
Confidence 34459999999999999999999999999999998774 35799999999999999999999999999 55556
Q ss_pred ecccC
Q 023820 182 REYDH 186 (276)
Q Consensus 182 ~~~~~ 186 (276)
..+..
T Consensus 97 ~~a~~ 101 (126)
T 3ex7_B 97 DWCFV 101 (126)
T ss_dssp EESEE
T ss_pred EEecC
Confidence 55544
No 219
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1e-14 Score=100.11 Aligned_cols=77 Identities=25% Similarity=0.373 Sum_probs=65.5
Q ss_pred CCCeEEEcCCC-------CCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEE
Q 023820 5 ASRTLYVGNLP-------GDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (276)
Q Consensus 5 ~~~~l~v~nL~-------~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v 77 (276)
..+.|.|.... +.+++++|+++|++||+|..|.|+ +.++|||||+|.+.++|+.|+..+++ +.|++|.|
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V 84 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKI 84 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEE
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEE
Confidence 35677777654 458999999999999999999997 46789999999999999999997555 67999999
Q ss_pred EEccCCCC
Q 023820 78 ELAHGGRG 85 (276)
Q Consensus 78 ~~a~~~~~ 85 (276)
.|+.....
T Consensus 85 ~~a~~~~~ 92 (100)
T 2d9o_A 85 SWLEGQPQ 92 (100)
T ss_dssp ECSSCCCC
T ss_pred EEccCCCC
Confidence 99876543
No 220
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.7e-15 Score=102.17 Aligned_cols=80 Identities=24% Similarity=0.351 Sum_probs=69.2
Q ss_pred CCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeE
Q 023820 103 VSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 178 (276)
Q Consensus 103 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 178 (276)
......+|||+|||..+++++|.++|.+||+|..+.++.+. ..+||||+|.+.++|.+|++.|++..+.| ..
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 83 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG----RQ 83 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS----CC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----eE
Confidence 44456679999999999999999999999999999998874 45699999999999999999999999999 55
Q ss_pred EeeecccC
Q 023820 179 VRVREYDH 186 (276)
Q Consensus 179 i~~~~~~~ 186 (276)
+.|.....
T Consensus 84 l~v~~a~~ 91 (102)
T 1x5s_A 84 IRVDQAGK 91 (102)
T ss_dssp CEEEEEEC
T ss_pred EEEEECCC
Confidence 56655544
No 221
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=4.8e-15 Score=102.11 Aligned_cols=76 Identities=9% Similarity=0.095 Sum_probs=66.1
Q ss_pred CCCCcEEEeCCCC-CCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCc--eecccceeeEEee
Q 023820 105 RRSEYLLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS--EFRNAFSRAYVRV 181 (276)
Q Consensus 105 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~--~~~g~~~~~~i~~ 181 (276)
.+..+|||+|||+ .+++++|.++|.+||.|..+.++.+ .+||||+|++.++|..|++.|++. .+.| ..|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK--INEAFIEMATTEDAQAAVDYYTTTPALVFG----KPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS--SSCEEEEESSHHHHHHHHHHHHHSCCEETT----EECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHHcCCCceECC----cEEEE
Confidence 3556699999999 9999999999999999999999876 469999999999999999999864 5888 66777
Q ss_pred ecccC
Q 023820 182 REYDH 186 (276)
Q Consensus 182 ~~~~~ 186 (276)
..+..
T Consensus 87 ~~a~~ 91 (102)
T 1x4d_A 87 HLSQK 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 76654
No 222
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.61 E-value=1.1e-15 Score=119.59 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=68.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCe--eEEEEecC-CCCCceEEEEecCHHHHHHHHHhcCCCccCCc----eEE
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPI--AHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH----RLR 76 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v--~~v~~~~~-~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~----~i~ 76 (276)
.|+++|||+|||+.+|+++|+++|++||.| ..+.+..+ +..+|+|||+|.+.++|.+|+..|||..|.|. ++.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 357899999999999999999999999999 88888654 34569999999999999999999999999876 677
Q ss_pred EEEc
Q 023820 77 VELA 80 (276)
Q Consensus 77 v~~a 80 (276)
|.++
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 7765
No 223
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=7e-15 Score=102.25 Aligned_cols=79 Identities=19% Similarity=0.157 Sum_probs=69.1
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
....+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|++|+..|++..+.| ..+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 86 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG----RELR 86 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT----BCCE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC----cEEE
Confidence 3455699999999999999999999999999999988743 5799999999999999999999999999 5666
Q ss_pred eecccCC
Q 023820 181 VREYDHR 187 (276)
Q Consensus 181 ~~~~~~~ 187 (276)
|..+...
T Consensus 87 V~~a~~~ 93 (103)
T 2dnm_A 87 VQVARYG 93 (103)
T ss_dssp EEECSSC
T ss_pred EEECCcC
Confidence 6666543
No 224
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-14 Score=99.78 Aligned_cols=78 Identities=19% Similarity=0.252 Sum_probs=68.9
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEee
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 181 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~ 181 (276)
...+|||+|||..+++++|.++|.+||.|..+.+..+. ..+||||+|.+.++|++|++.|++..+.| ..+.|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V 79 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG----RPMRV 79 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS----SCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC----cEEEE
Confidence 45669999999999999999999999999999998875 35799999999999999999999999999 56666
Q ss_pred ecccCC
Q 023820 182 REYDHR 187 (276)
Q Consensus 182 ~~~~~~ 187 (276)
.....+
T Consensus 80 ~~a~~~ 85 (95)
T 2dnz_A 80 GHVTER 85 (95)
T ss_dssp EESSCC
T ss_pred EEcccc
Confidence 666544
No 225
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-14 Score=98.63 Aligned_cols=75 Identities=17% Similarity=0.305 Sum_probs=66.8
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecc
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 184 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~ 184 (276)
....+|||+|||..+++++|.++|.+||+|..+.+. .+||||+|.+.++|++|+..|++..+.| ..+.|...
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHG----VNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSS----CBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCC----cEEEEEEC
Confidence 345569999999999999999999999999999998 5699999999999999999999999999 66777766
Q ss_pred cCC
Q 023820 185 DHR 187 (276)
Q Consensus 185 ~~~ 187 (276)
...
T Consensus 78 ~~~ 80 (90)
T 2dnq_A 78 KNK 80 (90)
T ss_dssp SCC
T ss_pred CCC
Confidence 554
No 226
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.60 E-value=6.2e-15 Score=99.43 Aligned_cols=77 Identities=12% Similarity=0.195 Sum_probs=68.3
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC-----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~-----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
...+|||+|||..+++++|.++|.+||.|..+.+..+. ..+||||+|.+.++|++|+..|+|..+.| ..+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 78 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG----QEIT 78 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC----eEEE
Confidence 34569999999999999999999999999999998876 56899999999999999999999999999 5666
Q ss_pred eecccC
Q 023820 181 VREYDH 186 (276)
Q Consensus 181 ~~~~~~ 186 (276)
+.....
T Consensus 79 v~~a~~ 84 (88)
T 4a8x_A 79 ATAVLA 84 (88)
T ss_dssp EEEECC
T ss_pred EEECCC
Confidence 665543
No 227
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-14 Score=100.20 Aligned_cols=78 Identities=19% Similarity=0.273 Sum_probs=69.1
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC-------CCeEEEEeCCHHHHHHHHHhcCCceecccceeeE
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-------GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 178 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~-------~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 178 (276)
...+|||+|||..+++++|.++|.+||+|..+.+..+.. .+||||+|.+.++|++|+..|++..+.| ..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG----HK 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT----EE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC----eE
Confidence 456699999999999999999999999999999987654 3699999999999999999999999999 67
Q ss_pred EeeecccCC
Q 023820 179 VRVREYDHR 187 (276)
Q Consensus 179 i~~~~~~~~ 187 (276)
+.|......
T Consensus 80 l~V~~a~~~ 88 (98)
T 2cpf_A 80 LEVRISERA 88 (98)
T ss_dssp CEEECSSCS
T ss_pred EEEEEccCC
Confidence 777766554
No 228
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.5e-14 Score=98.55 Aligned_cols=78 Identities=12% Similarity=0.173 Sum_probs=66.7
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcC--CceecccceeeEEee
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD--DSEFRNAFSRAYVRV 181 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~--~~~~~g~~~~~~i~~ 181 (276)
..+..+|||+|||..+++++|.++|.+||.|..+.++.+ ++||||+|.+.++|..|++.|+ +..+.| ..+.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLRN----QPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEETT----EECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECC----cEEEE
Confidence 345566999999999999999999999999999988865 6899999999999999999874 677888 66777
Q ss_pred ecccCC
Q 023820 182 REYDHR 187 (276)
Q Consensus 182 ~~~~~~ 187 (276)
..+..+
T Consensus 86 ~~a~~~ 91 (101)
T 2cq1_A 86 QYSNHK 91 (101)
T ss_dssp EECSCS
T ss_pred EEcCcc
Confidence 666543
No 229
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-14 Score=99.83 Aligned_cols=78 Identities=17% Similarity=0.347 Sum_probs=67.9
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
....+|||+|||..+++++|.++|.+||.|..+.++.+. ..+||||+|.+.++|++|++ |++..+.| ..+.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g----~~l~ 82 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG----KKVE 82 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS----CBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC----eEEE
Confidence 445569999999999999999999999999999998874 45799999999999999999 99999999 5666
Q ss_pred eecccCC
Q 023820 181 VREYDHR 187 (276)
Q Consensus 181 ~~~~~~~ 187 (276)
|.....+
T Consensus 83 V~~a~~~ 89 (99)
T 2dgs_A 83 VKRAEPR 89 (99)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 6665543
No 230
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=9.7e-15 Score=100.14 Aligned_cols=78 Identities=15% Similarity=0.167 Sum_probs=68.9
Q ss_pred CCCcEEEeCCCCCCCHHHHH----HHhhhcCCeeEEEEeecCC-CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 106 RSEYLLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~-~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
...+|||+|||..+++++|+ ++|.+||+|..+.++.+.. ++||||+|.+.++|++|++.|||..+.| ..+.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g----r~l~ 83 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGS----KKIL 83 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETT----EEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECC----eEEE
Confidence 34459999999999999999 9999999999999987643 6799999999999999999999999999 6777
Q ss_pred eecccCC
Q 023820 181 VREYDHR 187 (276)
Q Consensus 181 ~~~~~~~ 187 (276)
|..+...
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 7766543
No 231
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.60 E-value=8.7e-15 Score=99.86 Aligned_cols=77 Identities=14% Similarity=0.196 Sum_probs=66.3
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCce--ecccceeeEEee
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE--FRNAFSRAYVRV 181 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~--~~g~~~~~~i~~ 181 (276)
..++..|||+|||..+++++|.++|.+||.|..+.++. .+++|||+|++.++|..|++.|++.. +.| ..+.+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~G----r~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIAG----HPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEETT----EEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeCC----cEEEE
Confidence 34566799999999999999999999999999999875 46799999999999999999999876 668 66666
Q ss_pred ecccC
Q 023820 182 REYDH 186 (276)
Q Consensus 182 ~~~~~ 186 (276)
..+..
T Consensus 92 ~~S~~ 96 (100)
T 3r27_A 92 NYSTS 96 (100)
T ss_dssp EECSC
T ss_pred Eeccc
Confidence 65543
No 232
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.60 E-value=3.2e-14 Score=98.85 Aligned_cols=75 Identities=11% Similarity=0.237 Sum_probs=66.7
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecc
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 184 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~ 184 (276)
....+|||+|||..+++++|.++|.+||.|..+.++.+ ||||+|.+.++|++|++.|++..+.| ..+.|...
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD----YAFIHFDERDGAVKAMEEMNGKDLEG----ENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESSHHHHHHHHHHHTTEEETT----EEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----EEEEEeCCHHHHHHHHHHHCCCccCC----CEEEEEEc
Confidence 34566999999999999999999999999999998844 99999999999999999999999999 67777766
Q ss_pred cCC
Q 023820 185 DHR 187 (276)
Q Consensus 185 ~~~ 187 (276)
...
T Consensus 81 ~~~ 83 (103)
T 2dgu_A 81 KPP 83 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 233
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2e-14 Score=100.26 Aligned_cols=80 Identities=23% Similarity=0.259 Sum_probs=69.5
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEE
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 179 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i 179 (276)
.....+|||+|||..+++++|.++|.+||.|..+.++.+. ..+||||+|.+.++|++|+..|++..+.| ..+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 87 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG----KPI 87 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS----CBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC----eEE
Confidence 3445569999999999999999999999999999998875 34699999999999999999999999999 566
Q ss_pred eeecccCC
Q 023820 180 RVREYDHR 187 (276)
Q Consensus 180 ~~~~~~~~ 187 (276)
.|......
T Consensus 88 ~v~~a~~~ 95 (105)
T 1x5u_A 88 RVNKASAH 95 (105)
T ss_dssp EEEETTTT
T ss_pred EEEECCCC
Confidence 66665543
No 234
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.3e-14 Score=97.90 Aligned_cols=77 Identities=13% Similarity=0.264 Sum_probs=67.3
Q ss_pred CCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeE
Q 023820 103 VSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 178 (276)
Q Consensus 103 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 178 (276)
.+....+|||+|||..+++++|.++|.+||+|..+.+..+.. .+||||+|.+.++|++|++.|++..+.| ..
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 87 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG----RV 87 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT----EE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC----cE
Confidence 344556699999999999999999999999999999988743 5799999999999999999999999999 55
Q ss_pred Eeeec
Q 023820 179 VRVRE 183 (276)
Q Consensus 179 i~~~~ 183 (276)
+.+..
T Consensus 88 l~v~~ 92 (94)
T 2e5h_A 88 IKASI 92 (94)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55543
No 235
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-14 Score=97.81 Aligned_cols=76 Identities=22% Similarity=0.302 Sum_probs=67.7
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeec
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 183 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~ 183 (276)
+....+|||+|||..+++++|.++|.+||.|..+.+..+ ||||+|.+.++|+.|+..|++..+.| ..+.|..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----YAFVHMEKEADAKAAIAQLNGKEVKG----KRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESCHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC----EEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEE
Confidence 445566999999999999999999999999999999855 99999999999999999999999999 6677776
Q ss_pred ccCC
Q 023820 184 YDHR 187 (276)
Q Consensus 184 ~~~~ 187 (276)
....
T Consensus 78 a~~~ 81 (90)
T 2dnp_A 78 STKG 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6554
No 236
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.5e-14 Score=99.44 Aligned_cols=80 Identities=15% Similarity=0.210 Sum_probs=70.0
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEE
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 179 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i 179 (276)
.....+|||+|||..+++++|.++|.+||+|..+.++.+.. .+||||+|.+.++|.+|+..|++..+.| ..+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l 87 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH----LIL 87 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT----EEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC----cEE
Confidence 33455699999999999999999999999999999998853 3599999999999999999999999999 677
Q ss_pred eeecccCC
Q 023820 180 RVREYDHR 187 (276)
Q Consensus 180 ~~~~~~~~ 187 (276)
.|.....+
T Consensus 88 ~v~~a~~~ 95 (103)
T 2cq0_A 88 NVEWAKPS 95 (103)
T ss_dssp EEEESSCC
T ss_pred EEEECCCC
Confidence 77766554
No 237
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.7e-14 Score=99.99 Aligned_cols=80 Identities=16% Similarity=0.275 Sum_probs=69.1
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC-----CCCeEEEEeCCHHHHHHHHHhc-CCceecccceee
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKL-DDSEFRNAFSRA 177 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~-----~~~~~fv~f~~~~~a~~a~~~l-~~~~~~g~~~~~ 177 (276)
.....+|||+|||..+++++|.++|.+||.|..|.++.+. ..+||||+|.+.++|.+|+..| ++..+.| .
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g----~ 87 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG----R 87 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS----C
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC----C
Confidence 3445569999999999999999999999999999998772 4579999999999999999999 9999999 5
Q ss_pred EEeeecccCC
Q 023820 178 YVRVREYDHR 187 (276)
Q Consensus 178 ~i~~~~~~~~ 187 (276)
.+.|......
T Consensus 88 ~l~v~~a~~~ 97 (107)
T 2cph_A 88 RLVLEWADSE 97 (107)
T ss_dssp BCEEEECCCC
T ss_pred EEEEEeCCCC
Confidence 6666665544
No 238
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.1e-14 Score=98.71 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=67.6
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceec--ccceeeEEee
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR--NAFSRAYVRV 181 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~--g~~~~~~i~~ 181 (276)
.....+|||+|||..+++++|.++|.+||.|..+.+..+ .+||||+|.+.++|++|++.|++..+. | ..+.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g----~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPD----RRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSS----CBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCC----cEEEE
Confidence 345567999999999999999999999999999999866 679999999999999999999999999 7 55666
Q ss_pred ecccC
Q 023820 182 REYDH 186 (276)
Q Consensus 182 ~~~~~ 186 (276)
..+..
T Consensus 88 ~~a~~ 92 (97)
T 1why_A 88 DFAKS 92 (97)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 65554
No 239
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.5e-14 Score=100.08 Aligned_cols=80 Identities=10% Similarity=0.184 Sum_probs=70.1
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcC------Cceeccc
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLD------DSEFRNA 173 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~------~~~~~g~ 173 (276)
.....+|||+|||..+++++|.++|.+||+|..|.++.+. ..+||||+|.+.++|.+|+..|+ +..+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g- 90 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG- 90 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS-
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC-
Confidence 3445669999999999999999999999999999998774 45799999999999999999999 999999
Q ss_pred ceeeEEeeecccCC
Q 023820 174 FSRAYVRVREYDHR 187 (276)
Q Consensus 174 ~~~~~i~~~~~~~~ 187 (276)
..+.|.....+
T Consensus 91 ---~~l~v~~a~~~ 101 (111)
T 1x4h_A 91 ---RQLKVDLAVTR 101 (111)
T ss_dssp ---CEEEEECCCCC
T ss_pred ---EEEEEEECCCC
Confidence 66777766554
No 240
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.59 E-value=5.4e-14 Score=99.77 Aligned_cols=80 Identities=23% Similarity=0.281 Sum_probs=70.2
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCC----CeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
....+|||+|||..+++++|.++|.+||.|..+.++.+... +||||+|.+.++|++|++.|++..+.| ..+.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 98 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM----KRLK 98 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 34456999999999999999999999999999999988633 599999999999999999999999999 6777
Q ss_pred eecccCCC
Q 023820 181 VREYDHRR 188 (276)
Q Consensus 181 ~~~~~~~r 188 (276)
|.....+.
T Consensus 99 V~~a~~~~ 106 (115)
T 2cpz_A 99 VQLKRSKN 106 (115)
T ss_dssp EECCCCSC
T ss_pred EEEcCCCC
Confidence 77765543
No 241
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.59 E-value=9.4e-15 Score=102.87 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=65.4
Q ss_pred CCCcEEEeCCCCC-CCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecc
Q 023820 106 RSEYLLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 184 (276)
Q Consensus 106 ~~~~l~v~nl~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~ 184 (276)
...+|||+|||.. +++++|.++|.+||.|..+.+ ..+||||+|.+.++|++|+..|++..+.| ..+.|...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAG----QTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETT----EECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEEC
Confidence 3456999999999 999999999999999999998 46799999999999999999999999999 66777766
Q ss_pred cC
Q 023820 185 DH 186 (276)
Q Consensus 185 ~~ 186 (276)
..
T Consensus 98 ~~ 99 (110)
T 1wf1_A 98 GE 99 (110)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 242
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.4e-14 Score=99.50 Aligned_cols=77 Identities=21% Similarity=0.279 Sum_probs=67.5
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecc
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 184 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~ 184 (276)
....+|||+|||..+++++|.++|.+||.|. +.++.+...+||||+|.+.++|+.|+..|++..+.| ..+.|...
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGT----DTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSS----SCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEEc
Confidence 3455699999999999999999999999997 677778888999999999999999999999999999 55666655
Q ss_pred cC
Q 023820 185 DH 186 (276)
Q Consensus 185 ~~ 186 (276)
..
T Consensus 92 ~~ 93 (97)
T 2e5j_A 92 RQ 93 (97)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 243
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.2e-14 Score=98.97 Aligned_cols=85 Identities=9% Similarity=0.128 Sum_probs=72.7
Q ss_pred CCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCee-EEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceee
Q 023820 103 VSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVC-FSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 177 (276)
Q Consensus 103 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~-~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 177 (276)
......+|||+|||..+++++|.++|.+||+|. .+.++.++. .+||||+|.+.++|++|++.|++..+.|+....
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 344566799999999999999999999999999 999998853 369999999999999999999999999976544
Q ss_pred EEeeecccCC
Q 023820 178 YVRVREYDHR 187 (276)
Q Consensus 178 ~i~~~~~~~~ 187 (276)
.+.+..+...
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 5777766543
No 244
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.59 E-value=3.8e-15 Score=124.20 Aligned_cols=77 Identities=18% Similarity=0.323 Sum_probs=67.8
Q ss_pred CCCCCCeEEEcC--CCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccC---Cc--e
Q 023820 2 SSRASRTLYVGN--LPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD---GH--R 74 (276)
Q Consensus 2 ~~~~~~~l~v~n--L~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~---g~--~ 74 (276)
++.|+.+|||+| |+..+|+++|+++|++||+|..|.+.. ++|||||+|.+.++|++|++.|||..+. |+ .
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 468999999999 578999999999999999999988863 6899999999999999999999999873 45 5
Q ss_pred EEEEEcc
Q 023820 75 LRVELAH 81 (276)
Q Consensus 75 i~v~~a~ 81 (276)
|.|.++.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7777764
No 245
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.58 E-value=1e-13 Score=98.30 Aligned_cols=79 Identities=18% Similarity=0.225 Sum_probs=69.6
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
....+|||+|||..+++++|.++|.+||.|..+.++.+.. .+||||+|.+.++|++|++.|++..+.| ..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 88 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG----RQIR 88 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT----EECE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----EEEE
Confidence 3445599999999999999999999999999999998853 3699999999999999999999999999 6777
Q ss_pred eecccCC
Q 023820 181 VREYDHR 187 (276)
Q Consensus 181 ~~~~~~~ 187 (276)
|......
T Consensus 89 V~~a~~~ 95 (115)
T 2dgo_A 89 TNWATRK 95 (115)
T ss_dssp EEESSCC
T ss_pred EEEccCC
Confidence 7766554
No 246
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=2.8e-14 Score=97.02 Aligned_cols=76 Identities=24% Similarity=0.368 Sum_probs=67.7
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeec
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 183 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~ 183 (276)
.....+|||+|||..+++++|.++|.+||.|..+.+..+ ||||+|.+.++|.+|+..|++..+.| ..+.|..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQG----KRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS----EEEEEESCHHHHHHHHHHHTTEEETT----EEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEECCHHHHHHHHHHhCCCeeCC----cEEEEEE
Confidence 344556999999999999999999999999999999855 99999999999999999999999999 6777777
Q ss_pred ccCC
Q 023820 184 YDHR 187 (276)
Q Consensus 184 ~~~~ 187 (276)
...+
T Consensus 79 a~~~ 82 (92)
T 2dgt_A 79 STSR 82 (92)
T ss_dssp SSCC
T ss_pred ccCC
Confidence 6554
No 247
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=9.7e-14 Score=98.29 Aligned_cols=79 Identities=19% Similarity=0.308 Sum_probs=68.8
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC---CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
.....+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|++|+..|++..+.| ..+.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 87 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD----RPMH 87 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC----CEEE
Confidence 34456699999999999999999999999999999998864 3599999999999999999999999999 5666
Q ss_pred eecccC
Q 023820 181 VREYDH 186 (276)
Q Consensus 181 ~~~~~~ 186 (276)
|.....
T Consensus 88 v~~a~~ 93 (114)
T 2do0_A 88 VKMDER 93 (114)
T ss_dssp EEECSC
T ss_pred EEEccc
Confidence 665543
No 248
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.5e-14 Score=98.89 Aligned_cols=77 Identities=18% Similarity=0.326 Sum_probs=67.2
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC-----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~-----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
...+|||+|||..+++++|.++|.+|| |..+.++.+.. .+||||+|.+.++|++|+ .|++..+.| ..+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~ 87 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN----KRIR 87 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT----EECE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC----cEEE
Confidence 345599999999999999999999999 99999987753 579999999999999999 999999999 6677
Q ss_pred eecccCCC
Q 023820 181 VREYDHRR 188 (276)
Q Consensus 181 ~~~~~~~r 188 (276)
|.....+.
T Consensus 88 V~~a~~~~ 95 (104)
T 1wi8_A 88 VDVADQAQ 95 (104)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 77665543
No 249
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.3e-14 Score=100.73 Aligned_cols=77 Identities=14% Similarity=0.205 Sum_probs=68.9
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeeccc
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 185 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~~ 185 (276)
...+|||+|||..+++++|.++|.+||.|..+.++.+ .+||||+|.+.++|..|+..|++..+.| ..+.|....
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~ 97 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEG----HVVKCYWGK 97 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETT----EECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECC----cEEEEEecC
Confidence 4456999999999999999999999999999999877 6799999999999999999999999999 677777665
Q ss_pred CCC
Q 023820 186 HRR 188 (276)
Q Consensus 186 ~~r 188 (276)
...
T Consensus 98 ~~~ 100 (109)
T 1x4g_A 98 ESP 100 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 250
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.58 E-value=3.9e-15 Score=101.01 Aligned_cols=76 Identities=14% Similarity=0.274 Sum_probs=65.6
Q ss_pred CcEEEeCCCCCCCHHHHHHHhhhcC-CeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcC-CceecccceeeEEee
Q 023820 108 EYLLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLD-DSEFRNAFSRAYVRV 181 (276)
Q Consensus 108 ~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~-~~~~~g~~~~~~i~~ 181 (276)
++|||+|||..+++++|.++|.+|| +|..|.++.++ .+|||||+|.+.++|++|++.++ +..+.| ..+.|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g----r~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG----QKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT----EEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC----EEEEE
Confidence 5699999999999999999999999 89999998764 45799999999999999999875 557888 67777
Q ss_pred ecccCC
Q 023820 182 REYDHR 187 (276)
Q Consensus 182 ~~~~~~ 187 (276)
..+.++
T Consensus 78 ~~a~~~ 83 (91)
T 2lxi_A 78 HYSDPK 83 (91)
T ss_dssp ECCCSC
T ss_pred EEcCCC
Confidence 766543
No 251
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=3.6e-14 Score=98.65 Aligned_cols=77 Identities=18% Similarity=0.243 Sum_probs=67.2
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
....+|||+|||..+++++|.++|.+|| |..+.++.+.. .+||||+|.+.++|++|+ .|++..+.| ..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~ 86 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD----RSLR 86 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT----EECE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC----eEEE
Confidence 3445599999999999999999999997 99999998864 469999999999999999 899999999 6777
Q ss_pred eecccCC
Q 023820 181 VREYDHR 187 (276)
Q Consensus 181 ~~~~~~~ 187 (276)
|......
T Consensus 87 V~~a~~~ 93 (103)
T 2dng_A 87 VDIAEGR 93 (103)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 7766554
No 252
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.3e-14 Score=96.71 Aligned_cols=79 Identities=22% Similarity=0.245 Sum_probs=68.7
Q ss_pred CCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeE
Q 023820 103 VSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 178 (276)
Q Consensus 103 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 178 (276)
.+....+|||+|||..+++++|.++|.+||.|..+.++.+.. .+||||+|.+.++|++|+..|++..+.| ..
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 86 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG----RR 86 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT----EE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----EE
Confidence 344556699999999999999999999999999999998754 3599999999999999999999999999 66
Q ss_pred Eeeeccc
Q 023820 179 VRVREYD 185 (276)
Q Consensus 179 i~~~~~~ 185 (276)
+.|..+.
T Consensus 87 l~v~~a~ 93 (95)
T 2cqc_A 87 IRVSGPS 93 (95)
T ss_dssp EEEECCS
T ss_pred EEEEecC
Confidence 6666543
No 253
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.57 E-value=2e-14 Score=103.92 Aligned_cols=81 Identities=22% Similarity=0.231 Sum_probs=70.1
Q ss_pred CCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeE
Q 023820 103 VSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 178 (276)
Q Consensus 103 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 178 (276)
.+....+|||+|||..+++++|.++|.+||+|..+.++.+. ..+||||+|.+.++|++|+..|++..+.| ..
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g----~~ 117 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG----RR 117 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS----SC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----EE
Confidence 34456679999999999999999999999999999998774 45799999999999999999999999999 56
Q ss_pred EeeecccCC
Q 023820 179 VRVREYDHR 187 (276)
Q Consensus 179 i~~~~~~~~ 187 (276)
|.|.....+
T Consensus 118 l~V~~a~~~ 126 (129)
T 2kxn_B 118 IRVDFSITK 126 (129)
T ss_dssp CEESCCSSS
T ss_pred EEEEEecCC
Confidence 666655443
No 254
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.57 E-value=8.4e-14 Score=102.22 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=70.3
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEE
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 179 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i 179 (276)
+....+|||+|||..+++++|.++|..||+|..+.++.+.. .+||||+|.+.++|.+|++.|++..+.| ..|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 114 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN----KRL 114 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS----CEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----eEE
Confidence 34445699999999999999999999999999999998864 4699999999999999999999999999 677
Q ss_pred eeecccCC
Q 023820 180 RVREYDHR 187 (276)
Q Consensus 180 ~~~~~~~~ 187 (276)
.|..+...
T Consensus 115 ~v~~a~~~ 122 (139)
T 1u6f_A 115 KVALAASG 122 (139)
T ss_dssp EEEESSCC
T ss_pred EEEECCCC
Confidence 77766554
No 255
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.57 E-value=2.4e-14 Score=100.11 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=67.8
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCcee---cccceee
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEF---RNAFSRA 177 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~---~g~~~~~ 177 (276)
....+|||+|||..+++++|.++|.+||+|..+.++.+. ..+||||+|.+.++|.+|++.|++..+ .| .
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g----~ 86 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN----R 86 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS----S
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC----c
Confidence 344559999999999999999999999999999998864 457999999999999999999999987 66 5
Q ss_pred EEeeecccCC
Q 023820 178 YVRVREYDHR 187 (276)
Q Consensus 178 ~i~~~~~~~~ 187 (276)
.+.|......
T Consensus 87 ~l~v~~a~~~ 96 (106)
T 2dgp_A 87 PIQVKPADSE 96 (106)
T ss_dssp CCEEEECCCC
T ss_pred eEEEEECCcc
Confidence 5666665543
No 256
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.8e-14 Score=101.79 Aligned_cols=77 Identities=9% Similarity=0.138 Sum_probs=66.3
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCC--ceecccceeeEEeee
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD--SEFRNAFSRAYVRVR 182 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~--~~~~g~~~~~~i~~~ 182 (276)
.+..+|||+|||+.+++++|+++|.+||.|..+.++.+ ++||||+|++.++|.+|++.|++ ..+.| ..|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G----r~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRG----QPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTT----BCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECC----eEEEEE
Confidence 34566999999999999999999999999999999876 57999999999999999999874 57888 566666
Q ss_pred cccCC
Q 023820 183 EYDHR 187 (276)
Q Consensus 183 ~~~~~ 187 (276)
.+..+
T Consensus 103 ~a~~k 107 (119)
T 2ad9_A 103 FSNHK 107 (119)
T ss_dssp ECSSS
T ss_pred EccCC
Confidence 65443
No 257
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=2.8e-14 Score=100.52 Aligned_cols=80 Identities=13% Similarity=0.184 Sum_probs=70.4
Q ss_pred CCCCCcEEEeCCCCCCCHHHHH---HHhhhcCCeeEEEEeecCC-------CCeEEEEeCCHHHHHHHHHhcCCceeccc
Q 023820 104 SRRSEYLLVTGLPSSASWQDLK---DHMRRAGDVCFSQVFRDGS-------GTTGIVDYTNYDDMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~---~~f~~~g~i~~~~~~~~~~-------~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 173 (276)
.....+|||+|||..+++++|. ++|.+||+|..+.++.+.. .+||||+|.+.++|++|++.|++..+.|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g- 90 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG- 90 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT-
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC-
Confidence 3445679999999999999999 9999999999999987753 3699999999999999999999999999
Q ss_pred ceeeEEeeecccCC
Q 023820 174 FSRAYVRVREYDHR 187 (276)
Q Consensus 174 ~~~~~i~~~~~~~~ 187 (276)
..+.|..+..+
T Consensus 91 ---r~l~V~~a~~k 101 (111)
T 2cpi_A 91 ---RTLKASLGTTK 101 (111)
T ss_dssp ---EEEEEESCCCC
T ss_pred ---EEEEEEecccc
Confidence 67777776654
No 258
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.5e-14 Score=98.06 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=68.7
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEE-EEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~-~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
...+|||+|||..+++++|.++|.+||.|..+ .++.+. ..+||||+|.+.++|++|+..|++..+.| ..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN----RPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT----EECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 45569999999999999999999999999999 888763 35799999999999999999999999999 6677
Q ss_pred eecccCC
Q 023820 181 VREYDHR 187 (276)
Q Consensus 181 ~~~~~~~ 187 (276)
|.....+
T Consensus 80 v~~a~~~ 86 (96)
T 1x5t_A 80 VSYAFKK 86 (96)
T ss_dssp EEESCCC
T ss_pred EEEeccc
Confidence 7766553
No 259
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.56 E-value=2.4e-14 Score=98.15 Aligned_cols=77 Identities=10% Similarity=0.248 Sum_probs=68.2
Q ss_pred CCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeee
Q 023820 107 SEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 182 (276)
Q Consensus 107 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~ 182 (276)
+.+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|.+|++.|+|..+.| ..+.+.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~ 77 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS----RFLKCG 77 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEE
Confidence 45699999999999999999999999999999988753 5799999999999999999999999999 666666
Q ss_pred cccCC
Q 023820 183 EYDHR 187 (276)
Q Consensus 183 ~~~~~ 187 (276)
.+..+
T Consensus 78 ~a~~~ 82 (96)
T 2x1f_A 78 YSSNS 82 (96)
T ss_dssp ECSCS
T ss_pred EcCCC
Confidence 65543
No 260
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.56 E-value=9.6e-15 Score=99.55 Aligned_cols=78 Identities=8% Similarity=0.114 Sum_probs=66.2
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCC--eeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCce----eccc
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSE----FRNA 173 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~--i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~----~~g~ 173 (276)
....++|||+|||+.+|+++|.++|.+||. +..|.++.++ ++|||||+|.+.++|++|++.|++.. ++|
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G- 84 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG- 84 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT-
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC-
Confidence 345677999999999999999999999995 6688888774 45799999999999999999999974 777
Q ss_pred ceeeEEeeeccc
Q 023820 174 FSRAYVRVREYD 185 (276)
Q Consensus 174 ~~~~~i~~~~~~ 185 (276)
+.+.|..++
T Consensus 85 ---r~i~V~~Ak 93 (95)
T 2lkz_A 85 ---KTIGVDFAK 93 (95)
T ss_dssp ---EEEEEEECC
T ss_pred ---EEEEEEEcc
Confidence 666666553
No 261
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.9e-14 Score=98.13 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=65.6
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCC-eeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCC-ceecccceeeEEee
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD-SEFRNAFSRAYVRV 181 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~-~~~~g~~~~~~i~~ 181 (276)
+....+|||+|||..+++++|.++|.+||. |..+.+. ..+||||+|.+.++|++|++.|++ ..+.| ..+.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHG----KIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETT----EECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECC----EEEEE
Confidence 345567999999999999999999999999 6656553 367999999999999999999999 99999 67777
Q ss_pred ecccCC
Q 023820 182 REYDHR 187 (276)
Q Consensus 182 ~~~~~~ 187 (276)
.....+
T Consensus 78 ~~a~~~ 83 (93)
T 2cqh_A 78 DYSVSK 83 (93)
T ss_dssp EECCCC
T ss_pred EEccCc
Confidence 776554
No 262
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=4.8e-14 Score=97.73 Aligned_cols=76 Identities=18% Similarity=0.248 Sum_probs=64.6
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCc--eecccceeeEEeee
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS--EFRNAFSRAYVRVR 182 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~--~~~g~~~~~~i~~~ 182 (276)
.+..+|||+|||..+++++|.++|.+||.|..+.++.+ ++||||+|.+.++|.+|++.|++. .+.| ..+.+.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G----r~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIAG----QQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSSS----SBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEEEE
Confidence 34566999999999999999999999999999988764 679999999999999999998764 4788 556666
Q ss_pred cccC
Q 023820 183 EYDH 186 (276)
Q Consensus 183 ~~~~ 186 (276)
....
T Consensus 87 ~a~~ 90 (104)
T 1wex_A 87 YSTS 90 (104)
T ss_dssp ECSS
T ss_pred EccC
Confidence 5544
No 263
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=100.55 Aligned_cols=74 Identities=19% Similarity=0.208 Sum_probs=67.0
Q ss_pred cEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecccCC
Q 023820 109 YLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHR 187 (276)
Q Consensus 109 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~~~~ 187 (276)
+|||+|||..+++++|.++|.+||+|..+.+..+ ..+||||+|.+.++|++|++.|++..+.| ..+.|......
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~~a~~~ 75 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICG----SRVRVELSTGM 75 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSS----CCCEEEESSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECC----cEEEEEEccCC
Confidence 5999999999999999999999999999999888 77899999999999999999999999999 55666665543
No 264
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.56 E-value=2.5e-14 Score=95.28 Aligned_cols=74 Identities=18% Similarity=0.260 Sum_probs=66.2
Q ss_pred cEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecc
Q 023820 109 YLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 184 (276)
Q Consensus 109 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~ 184 (276)
+|||+|||..+++++|.++|.+||+|..+.++.+.. .+||||+|.+.++|+.|+..|+|..+.| ..+.+..+
T Consensus 3 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v~~a 78 (83)
T 3md1_A 3 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG----RPLRINWA 78 (83)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC----cEEEEEec
Confidence 599999999999999999999999999999988854 4699999999999999999999999999 66666655
Q ss_pred cC
Q 023820 185 DH 186 (276)
Q Consensus 185 ~~ 186 (276)
..
T Consensus 79 ~~ 80 (83)
T 3md1_A 79 AK 80 (83)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 265
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.56 E-value=2.9e-14 Score=95.87 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=66.3
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEee
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 181 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~ 181 (276)
...+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|+.|++.|++..+.| ..+.+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v 80 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG----RQIRT 80 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----eEEEE
Confidence 345699999999999999999999999999999998753 3699999999999999999999999999 55666
Q ss_pred eccc
Q 023820 182 REYD 185 (276)
Q Consensus 182 ~~~~ 185 (276)
..+.
T Consensus 81 ~~a~ 84 (87)
T 3bs9_A 81 NWAT 84 (87)
T ss_dssp EEEC
T ss_pred EecC
Confidence 5543
No 266
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.7e-14 Score=99.29 Aligned_cols=80 Identities=9% Similarity=0.124 Sum_probs=68.8
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCe----eEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
....+|||+|||..+++++|.++|.+||.| ..+.+......+||||+|.+.++|+.|+..|++..+.| ..+.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~ 98 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG----KILV 98 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS----CBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC----cEEE
Confidence 345669999999999999999999999998 66777766778899999999999999999999999998 5666
Q ss_pred eecccCCC
Q 023820 181 VREYDHRR 188 (276)
Q Consensus 181 ~~~~~~~r 188 (276)
|..+....
T Consensus 99 v~~a~~~~ 106 (115)
T 2cpx_A 99 IEFGKNKK 106 (115)
T ss_dssp EEECCCCS
T ss_pred EEEccCCC
Confidence 66665543
No 267
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.56 E-value=2.5e-14 Score=97.28 Aligned_cols=78 Identities=19% Similarity=0.372 Sum_probs=67.6
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC--CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeee
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 182 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~--~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~ 182 (276)
....+|||+|||..+++++|.++|.+||+|..+.+..+. ..+||||+|.+.++|++|+..|++..+.| ..+.|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v~ 81 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSG----REIDVR 81 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT----BCCCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----cEEEEE
Confidence 345569999999999999999999999999999998753 34699999999999999999999999999 556666
Q ss_pred cccC
Q 023820 183 EYDH 186 (276)
Q Consensus 183 ~~~~ 186 (276)
....
T Consensus 82 ~a~~ 85 (92)
T 2dgv_A 82 IDRN 85 (92)
T ss_dssp ECSC
T ss_pred EcCC
Confidence 5544
No 268
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.56 E-value=2.5e-14 Score=100.15 Aligned_cols=76 Identities=14% Similarity=0.206 Sum_probs=67.5
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeec
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 183 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~ 183 (276)
.....+|||+|||..+++++|.++|.+||.|..+.+. .+||||+|.+.++|++|+..|+|..+.| ..+.|..
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFAN----QPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETT----EECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEE
Confidence 3445569999999999999999999999999999998 6799999999999999999999999998 6677776
Q ss_pred ccCC
Q 023820 184 YDHR 187 (276)
Q Consensus 184 ~~~~ 187 (276)
....
T Consensus 100 a~~~ 103 (108)
T 2jvo_A 100 SKLP 103 (108)
T ss_dssp CSCC
T ss_pred ecCC
Confidence 6543
No 269
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.56 E-value=3.9e-14 Score=94.79 Aligned_cols=75 Identities=23% Similarity=0.238 Sum_probs=65.8
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
....+|||+|||..+++++|.++|.+||+|..+.++.+. ..+||||+|.+.++|..|++.|++..+.| ..+.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 80 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----RTIR 80 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC----cEEE
Confidence 455669999999999999999999999999999998774 35699999999999999999999999999 4555
Q ss_pred eec
Q 023820 181 VRE 183 (276)
Q Consensus 181 ~~~ 183 (276)
+..
T Consensus 81 v~~ 83 (85)
T 3mdf_A 81 VNL 83 (85)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 270
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.56 E-value=1.1e-15 Score=106.23 Aligned_cols=69 Identities=23% Similarity=0.446 Sum_probs=58.7
Q ss_pred cCCCCCCCHHHHHHHH------------hhcCCeeEEEEecC--CCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEE
Q 023820 12 GNLPGDIREREVEDLF------------YKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (276)
Q Consensus 12 ~nL~~~~t~~~l~~~F------------~~~G~v~~v~~~~~--~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v 77 (276)
.|||..+++++|+++| ++||+|..|.|..+ +.++|||||+|.+.++|++|+..|||..|+|++|.|
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v 100 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 100 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEE
Confidence 3444555666666666 99999999999653 467899999999999999999999999999999999
Q ss_pred EEc
Q 023820 78 ELA 80 (276)
Q Consensus 78 ~~a 80 (276)
.|+
T Consensus 101 ~~s 103 (104)
T 1jmt_A 101 ELS 103 (104)
T ss_dssp EEC
T ss_pred EEc
Confidence 986
No 271
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=5.6e-14 Score=96.90 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=67.6
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecc
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 184 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~ 184 (276)
....+|||+|||..+++++|.++|.+||+|..+.+..+ .+||||+|.+.++|.+|++.|++..+.| ..+.|...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~--kg~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMPLRG----KQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT--TTEEEEECSSSHHHHHHHHHHTTCCBTT----BCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCEeCC----ceEEEEEc
Confidence 34556999999999999999999999999999998865 6799999999999999999999999999 56666665
Q ss_pred cCC
Q 023820 185 DHR 187 (276)
Q Consensus 185 ~~~ 187 (276)
...
T Consensus 87 ~~~ 89 (99)
T 2cpj_A 87 CHS 89 (99)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 272
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.4e-13 Score=95.12 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=69.7
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC---CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
.....+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|.+|++.|++..+.| ..+.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 89 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE----NIIK 89 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS----CEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC----EEEE
Confidence 34455699999999999999999999999999999998763 3699999999999999999999999999 6677
Q ss_pred eecccCC
Q 023820 181 VREYDHR 187 (276)
Q Consensus 181 ~~~~~~~ 187 (276)
|.....+
T Consensus 90 v~~a~~~ 96 (100)
T 2do4_A 90 VAISNSG 96 (100)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 7666543
No 273
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.55 E-value=9.6e-15 Score=103.45 Aligned_cols=78 Identities=26% Similarity=0.345 Sum_probs=67.7
Q ss_pred CCCCeEEEcCCCC--CC---CHHHHHHHHhhcCCeeEEEEecC-------CCCCceEEEEecCHHHHHHHHHhcCCCccC
Q 023820 4 RASRTLYVGNLPG--DI---REREVEDLFYKYGPIAHIDLKIP-------PRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (276)
Q Consensus 4 ~~~~~l~v~nL~~--~~---t~~~l~~~F~~~G~v~~v~~~~~-------~~~~g~afV~f~~~e~a~~A~~~lng~~~~ 71 (276)
.|+++|+|.|+-. ++ -+++|++.|++||+|..|.|+.+ +.++|+|||+|.++++|.+|+..|||..|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 4789999999942 22 36889999999999999999653 235699999999999999999999999999
Q ss_pred CceEEEEEcc
Q 023820 72 GHRLRVELAH 81 (276)
Q Consensus 72 g~~i~v~~a~ 81 (276)
|+.|.|.++.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999875
No 274
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=7.9e-14 Score=98.59 Aligned_cols=79 Identities=22% Similarity=0.377 Sum_probs=69.1
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCee--------EEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecc
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVC--------FSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRN 172 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~--------~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g 172 (276)
....+|||+|||..+++++|.++|.+||.|. .+.++.+. ..+||||+|.+.++|++|++.|++..+.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 3455699999999999999999999999999 68888874 35699999999999999999999999999
Q ss_pred cceeeEEeeecccCC
Q 023820 173 AFSRAYVRVREYDHR 187 (276)
Q Consensus 173 ~~~~~~i~~~~~~~~ 187 (276)
..+.|......
T Consensus 93 ----~~l~V~~a~~~ 103 (113)
T 2cpe_A 93 ----SKLKVSLARKK 103 (113)
T ss_dssp ----EECEEECSSCC
T ss_pred ----CEEEEEECCCC
Confidence 67777766554
No 275
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=4e-14 Score=98.00 Aligned_cols=80 Identities=20% Similarity=0.296 Sum_probs=65.1
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeec
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 183 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~ 183 (276)
+....+|||+|||..+++++|+++|.+||.|..+........+||||+|.+.++|++|+..|++..+.| ..+.|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEG----RAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT----EEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC----eEEEEEE
Confidence 344566999999999999999999999998832222122456799999999999999999999999999 6777777
Q ss_pred ccCC
Q 023820 184 YDHR 187 (276)
Q Consensus 184 ~~~~ 187 (276)
...+
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 6554
No 276
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.55 E-value=3.5e-14 Score=97.95 Aligned_cols=71 Identities=18% Similarity=0.310 Sum_probs=63.8
Q ss_pred CCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeE--------EEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCcee
Q 023820 103 VSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEF 170 (276)
Q Consensus 103 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~ 170 (276)
.+....+|||+|||..+++++|.++|.+||.|.. +.+..+.. .|||||+|.+.++|+.|++.|+|..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4445566999999999999999999999999999 99988754 46999999999999999999999999
Q ss_pred ccc
Q 023820 171 RNA 173 (276)
Q Consensus 171 ~g~ 173 (276)
.|+
T Consensus 89 ~g~ 91 (99)
T 2la6_A 89 SGN 91 (99)
T ss_dssp SSS
T ss_pred CCc
Confidence 994
No 277
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.4e-13 Score=94.91 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=66.2
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhc--CCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeee
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 182 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~ 182 (276)
....+|||+|||..+++++|.++|.+| |.|..+.+. .+||||+|.+.++|.+|+..|++..+.| ..+.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLDG----SPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEETT----EEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeCC----cEEEEE
Confidence 345569999999999999999999999 899988876 4599999999999999999999999998 677777
Q ss_pred cccCC
Q 023820 183 EYDHR 187 (276)
Q Consensus 183 ~~~~~ 187 (276)
.+...
T Consensus 85 ~a~~~ 89 (99)
T 2cpd_A 85 LAKPV 89 (99)
T ss_dssp CCCCC
T ss_pred ECCCC
Confidence 76554
No 278
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=6.2e-14 Score=93.80 Aligned_cols=73 Identities=16% Similarity=0.246 Sum_probs=64.5
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhc-CCceecccceeeEEeeec
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL-DDSEFRNAFSRAYVRVRE 183 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l-~~~~~~g~~~~~~i~~~~ 183 (276)
....+|||+|||..+++++|.++|.+||.|..+.+..+ .+||||+|.+.++|..|+..| ++..+.| ..+.+..
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~--kg~afV~f~~~~~A~~a~~~l~~~~~~~g----~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR--QQCAFIQFATRQAAEVAAEKSFNKLIVNG----RRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHTTTTTCEETT----EECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC--CCEEEEEECCHHHHHHHHHHhcCCeeECC----CEEEEEe
Confidence 34556999999999999999999999999999999875 579999999999999999999 9999999 4555543
No 279
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.55 E-value=2.2e-14 Score=100.87 Aligned_cols=78 Identities=18% Similarity=0.219 Sum_probs=67.2
Q ss_pred CCCCCeEEEcCCCCCC----------CHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCC
Q 023820 3 SRASRTLYVGNLPGDI----------REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (276)
Q Consensus 3 ~~~~~~l~v~nL~~~~----------t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g 72 (276)
.-|+++|.|.|+-..- -+++|+++|++||.|..|.|..+. .+|+|||+|.+.++|++|+..|||..|+|
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3578999999984332 245789999999999999996543 58999999999999999999999999999
Q ss_pred ceEEEEEcc
Q 023820 73 HRLRVELAH 81 (276)
Q Consensus 73 ~~i~v~~a~ 81 (276)
+.|.|.++.
T Consensus 83 R~i~v~~~~ 91 (114)
T 3s6e_A 83 KMITAAYVP 91 (114)
T ss_dssp EECEEEEEC
T ss_pred EEEEEEEEc
Confidence 999999975
No 280
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.54 E-value=9.2e-14 Score=99.04 Aligned_cols=75 Identities=25% Similarity=0.319 Sum_probs=65.6
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
....+|||+|||..+++++|+++|.+||+|..+.++.+. ..+||||+|.+.++|++|++.|++..+.| ..+.
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 113 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT----KRLK 113 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT----EECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 344559999999999999999999999999999998774 35799999999999999999999999999 4555
Q ss_pred eec
Q 023820 181 VRE 183 (276)
Q Consensus 181 ~~~ 183 (276)
|..
T Consensus 114 V~~ 116 (118)
T 2khc_A 114 VQL 116 (118)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
No 281
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.54 E-value=3.7e-14 Score=97.05 Aligned_cols=76 Identities=16% Similarity=0.183 Sum_probs=66.9
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC---CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEee
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 181 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~ 181 (276)
....+|||+|||..+++++|.++|.+||+|..+.+..+.. .+||||+|.+.++|++|++.|++..+.| ..+.|
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V 89 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYG----RPINV 89 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC----CEEEE
Confidence 3445699999999999999999999999999999998864 3599999999999999999999999999 55665
Q ss_pred ecc
Q 023820 182 REY 184 (276)
Q Consensus 182 ~~~ 184 (276)
..+
T Consensus 90 ~~a 92 (95)
T 2ywk_A 90 SGP 92 (95)
T ss_dssp ECC
T ss_pred EEc
Confidence 544
No 282
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.3e-14 Score=97.15 Aligned_cols=68 Identities=22% Similarity=0.299 Sum_probs=62.5
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceeccc
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 173 (276)
...+|||+|||..+++++|.++|.+||+|..+.++.++. .+||||+|.+.++|+.|++.|+|..+.|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ 75 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE
Confidence 456699999999999999999999999999999988743 57999999999999999999999999984
No 283
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.9e-13 Score=95.14 Aligned_cols=79 Identities=18% Similarity=0.110 Sum_probs=68.5
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhh-cCCeeEEEEeecCC---CCeEEEEeCCHHHHHHHHHhcCCce-ecccceeeE
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSE-FRNAFSRAY 178 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~-~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~-~~g~~~~~~ 178 (276)
+....+|||+|||..+++++|.++|.+ ||.|..+.++.+.. .+||||+|.+.++|.+|+..|++.. +.| ..
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g----~~ 81 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS----KP 81 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS----SC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC----Ee
Confidence 345566999999999999999999999 99999999998853 3599999999999999999999999 998 55
Q ss_pred EeeecccC
Q 023820 179 VRVREYDH 186 (276)
Q Consensus 179 i~~~~~~~ 186 (276)
+.+.....
T Consensus 82 l~v~~a~~ 89 (104)
T 2dhg_A 82 VRLSVAIP 89 (104)
T ss_dssp CCCCBCCC
T ss_pred EEEEEccC
Confidence 66665544
No 284
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.9e-14 Score=99.00 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=66.4
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEee
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 181 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~ 181 (276)
...+|||+|||..+++++|.++|.+||+|..+.+..+.. .+||||+|.+.++|+.|+..|+|..+.| ..+.|
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V 97 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG----QPISV 97 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS----SBCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC----cEEEE
Confidence 344599999999999999999999999999999998865 4699999999999999999999999999 45555
Q ss_pred eccc
Q 023820 182 REYD 185 (276)
Q Consensus 182 ~~~~ 185 (276)
..+.
T Consensus 98 ~~a~ 101 (106)
T 1p27_B 98 DWCF 101 (106)
T ss_dssp EESE
T ss_pred Eeec
Confidence 5443
No 285
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.54 E-value=7.2e-14 Score=95.89 Aligned_cols=76 Identities=16% Similarity=0.168 Sum_probs=65.7
Q ss_pred CCCCCCcEEEeCCCC-CCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEee
Q 023820 103 VSRRSEYLLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 181 (276)
Q Consensus 103 ~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~ 181 (276)
......+|||+|||. .+++++|.++|.+||.|..+.+. .+||||+|.+.++|.+|+..|+|..+.| ..+.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFG----KKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETT----EECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECC----EEEEE
Confidence 344556699999998 99999999999999999999984 6799999999999999999999999998 56666
Q ss_pred ecccC
Q 023820 182 REYDH 186 (276)
Q Consensus 182 ~~~~~ 186 (276)
.....
T Consensus 90 ~~a~~ 94 (97)
T 2xnq_A 90 EVSSS 94 (97)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 65543
No 286
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=5.6e-14 Score=97.27 Aligned_cols=74 Identities=15% Similarity=0.140 Sum_probs=66.0
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeeccc
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 185 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~~ 185 (276)
...+|||+|||..+++++|.++|.+||.|..+.+. ...+||||+|.+.++|..|+..|++..+.| ..+.|..+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQG----RNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETT----EECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEEecc
Confidence 34569999999999999999999999999999988 456899999999999999999999999999 666666554
No 287
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.53 E-value=1.4e-13 Score=96.03 Aligned_cols=82 Identities=20% Similarity=0.177 Sum_probs=68.1
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC---CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEee
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 181 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~ 181 (276)
....+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|++|++.|++..+.|.. ...+.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~-~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGA-SSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTC-SSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCC-CccEEE
Confidence 3456699999999999999999999999999999998864 369999999999999999999999988721 134555
Q ss_pred ecccCC
Q 023820 182 REYDHR 187 (276)
Q Consensus 182 ~~~~~~ 187 (276)
..+...
T Consensus 92 ~~a~~~ 97 (105)
T 2dnh_A 92 KFADTD 97 (105)
T ss_dssp EESCSS
T ss_pred EECccC
Confidence 555443
No 288
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.8e-14 Score=99.00 Aligned_cols=79 Identities=19% Similarity=0.248 Sum_probs=68.5
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC--CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEee
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 181 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~--~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~ 181 (276)
.....+|||+|||..+++++|.++|.+||+|..+.+..+. ..+||||+|.+.++|++|+..|+|..+.| ..+.|
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V 101 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG----RKIEV 101 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECC----EEEEE
Confidence 3345569999999999999999999999999999998774 36799999999999999999999999999 56666
Q ss_pred ecccC
Q 023820 182 REYDH 186 (276)
Q Consensus 182 ~~~~~ 186 (276)
..+..
T Consensus 102 ~~a~~ 106 (109)
T 2err_A 102 NNATA 106 (109)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 65543
No 289
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.53 E-value=6.1e-14 Score=98.66 Aligned_cols=77 Identities=16% Similarity=0.165 Sum_probs=67.7
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEee
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 181 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~ 181 (276)
...+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|..|+..|+|..+.| ..+.|
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V 100 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG----QTIQV 100 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC----cEEEE
Confidence 345599999999999999999999999999999987753 4799999999999999999999999999 56666
Q ss_pred ecccC
Q 023820 182 REYDH 186 (276)
Q Consensus 182 ~~~~~ 186 (276)
.....
T Consensus 101 ~~a~~ 105 (110)
T 1oo0_B 101 DWCFV 105 (110)
T ss_dssp EESEE
T ss_pred EEccc
Confidence 65544
No 290
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=6.9e-14 Score=97.70 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=64.5
Q ss_pred CCCCCcEEEeCCCCC-CCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCC--ceecccceeeEEe
Q 023820 104 SRRSEYLLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD--SEFRNAFSRAYVR 180 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~--~~~~g~~~~~~i~ 180 (276)
..+..+|||+|||+. +++++|.++|.+||+|..+.++. .++||||+|++.++|..|++.|++ ..+.| ..+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G----r~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQG----RCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSSS----SCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceECC----EEEE
Confidence 344566999999998 99999999999999999999974 467999999999999999998864 55888 5555
Q ss_pred eecccC
Q 023820 181 VREYDH 186 (276)
Q Consensus 181 ~~~~~~ 186 (276)
|..+..
T Consensus 96 V~~a~~ 101 (112)
T 1x4f_A 96 VDLSEK 101 (112)
T ss_dssp EEEECS
T ss_pred EEECcc
Confidence 555543
No 291
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.2e-13 Score=92.96 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=62.3
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC-CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecc
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 184 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~ 184 (276)
...+|||+|||..+++++|.++|.+||.|..| +.+. .+.||||+|.+.++|.+|+. |++..+.| ..+.|...
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g----~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGG----HRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETT----EECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECC----EEEEEEEC
Confidence 44569999999999999999999999999987 3332 22299999999999999999 99999999 66666654
Q ss_pred cC
Q 023820 185 DH 186 (276)
Q Consensus 185 ~~ 186 (276)
..
T Consensus 80 ~~ 81 (94)
T 2e5g_A 80 EQ 81 (94)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 292
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.1e-13 Score=95.05 Aligned_cols=80 Identities=15% Similarity=0.240 Sum_probs=69.6
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEE
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 179 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i 179 (276)
.....+|||+|||..+++++|.++|.+||+|..+.++.+.. .+||||+|.+.++|++|+.. ++..+.| ..+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g----~~l 87 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG----RNI 87 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT----EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC----EEE
Confidence 34455699999999999999999999999999999998854 36999999999999999998 9999999 677
Q ss_pred eeecccCCC
Q 023820 180 RVREYDHRR 188 (276)
Q Consensus 180 ~~~~~~~~r 188 (276)
.|.....+.
T Consensus 88 ~V~~a~~~~ 96 (105)
T 2dh8_A 88 DPKPCTPRG 96 (105)
T ss_dssp BCCCSCCSS
T ss_pred EEEEccCCC
Confidence 777765543
No 293
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.6e-13 Score=95.06 Aligned_cols=78 Identities=19% Similarity=0.169 Sum_probs=67.7
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEE
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 179 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i 179 (276)
.....+|||+|||..+++++|.++|.+||.|..+.++.+. ..+||||+|.+.++|++|++.+++ .+.| ..+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g----~~l 88 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG----RKA 88 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT----EEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC----EEE
Confidence 3445569999999999999999999999999999998874 457999999999999999999998 8888 667
Q ss_pred eeecccC
Q 023820 180 RVREYDH 186 (276)
Q Consensus 180 ~~~~~~~ 186 (276)
.|..+..
T Consensus 89 ~V~~a~~ 95 (116)
T 2cqd_A 89 NVNLAYL 95 (116)
T ss_dssp EEEESTT
T ss_pred EEEEccc
Confidence 7766544
No 294
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.52 E-value=6.3e-14 Score=98.10 Aligned_cols=74 Identities=20% Similarity=0.211 Sum_probs=65.1
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC---CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEee
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 181 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~ 181 (276)
....+|||+|||..+++++|.++|.+||.|..+.++.+.. .+||||+|.+.++|++|++.|++..+.| ..|.|
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V 102 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG----RPMNI 102 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC----cEEEE
Confidence 3445599999999999999999999999999999998863 3599999999999999999999999999 44544
Q ss_pred e
Q 023820 182 R 182 (276)
Q Consensus 182 ~ 182 (276)
.
T Consensus 103 ~ 103 (107)
T 3ulh_A 103 Q 103 (107)
T ss_dssp E
T ss_pred E
Confidence 4
No 295
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.52 E-value=6.1e-14 Score=104.12 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=66.7
Q ss_pred cEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecccC
Q 023820 109 YLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 186 (276)
Q Consensus 109 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 186 (276)
.|||+||++.+++++|.++|.+||+|..|.+.....++||||+|.+.++|++|++.|+|..|.|. .+.++|...+.
T Consensus 48 ~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~--g~~L~V~~Ak~ 123 (164)
T 1sjr_A 48 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA--CCTLRIDFSKL 123 (164)
T ss_dssp EEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSS--CSCEEEEECSS
T ss_pred EEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCC--CcEEEEEEecC
Confidence 38999999999999999999999999999998777778999999999999999999999999652 14566666554
No 296
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.52 E-value=1.9e-13 Score=95.67 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=67.6
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
....+|||+|||..+++++|.++|.+||+|..+.++.+.. .+||||+|.+.++|..|++.|+|..+.| ..+.
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g----~~l~ 99 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG----RPMK 99 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS----SCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 3445599999999999999999999999999999998754 3699999999999999999999999999 5566
Q ss_pred eecccC
Q 023820 181 VREYDH 186 (276)
Q Consensus 181 ~~~~~~ 186 (276)
|.....
T Consensus 100 V~~a~~ 105 (108)
T 2jrs_A 100 VGHVTE 105 (108)
T ss_dssp EECSCS
T ss_pred EEEccc
Confidence 655443
No 297
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=3.8e-14 Score=97.15 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=63.9
Q ss_pred CCCCcEEEeCCCC-CCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeec
Q 023820 105 RRSEYLLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 183 (276)
Q Consensus 105 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~ 183 (276)
....+|||+|||. .+++++|.++|.+||.|..+.+. .+||||+|.+.++|..|+..|++..+.|+ .+.|..
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGK----KLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTT----TBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCc----EEEEEE
Confidence 3455699999998 99999999999999999999995 56999999999999999999999999994 455554
Q ss_pred ccC
Q 023820 184 YDH 186 (276)
Q Consensus 184 ~~~ 186 (276)
...
T Consensus 80 a~~ 82 (96)
T 2kvi_A 80 SSS 82 (96)
T ss_dssp EEC
T ss_pred cCc
Confidence 433
No 298
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=9e-14 Score=95.29 Aligned_cols=77 Identities=23% Similarity=0.329 Sum_probs=67.5
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEE-EEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecc
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 184 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~ 184 (276)
...+|||+|||..+++++|.++|.+||.|..+ .++.+...+.|||+|.+.++|..|+..|++..+.| ..+.|...
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLEN----FTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSS----CBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEEc
Confidence 34569999999999999999999999999999 58888777779999999999999999999999999 55555554
Q ss_pred cC
Q 023820 185 DH 186 (276)
Q Consensus 185 ~~ 186 (276)
..
T Consensus 90 ~~ 91 (96)
T 2e44_A 90 PD 91 (96)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 299
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.52 E-value=3.3e-14 Score=115.71 Aligned_cols=81 Identities=22% Similarity=0.258 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec--CCCCCceEEEEecCHHHHHHHHHhcCC-CccC---CceEEE
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDG-YDFD---GHRLRV 77 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~e~a~~A~~~lng-~~~~---g~~i~v 77 (276)
.++++|||+|||+.+|+++|.++|+.||.|..|.|.. ++.++|||||+|.+.++|..|+..||+ ..+. +++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4678999999999999999999999999999999854 566789999999999999999999954 4444 999999
Q ss_pred EEccCCC
Q 023820 78 ELAHGGR 84 (276)
Q Consensus 78 ~~a~~~~ 84 (276)
.++....
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9987543
No 300
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=9.4e-14 Score=95.57 Aligned_cols=77 Identities=14% Similarity=0.161 Sum_probs=65.5
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEee
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 181 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~ 181 (276)
...+|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|++|++.|++..+.| ..+.|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~V 89 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS----RKVKL 89 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT----EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC----eEEEE
Confidence 345599999999999999999999999998776666543 4699999999999999999999999999 56666
Q ss_pred ecccC
Q 023820 182 REYDH 186 (276)
Q Consensus 182 ~~~~~ 186 (276)
.....
T Consensus 90 ~~a~~ 94 (98)
T 2cqp_A 90 VLGSG 94 (98)
T ss_dssp EESSC
T ss_pred EEcCC
Confidence 65543
No 301
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.2e-13 Score=92.69 Aligned_cols=78 Identities=23% Similarity=0.370 Sum_probs=66.5
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEE
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 179 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i 179 (276)
.....+|||+|||..+++++|.++|.+||+|..+.++.+.. .+||||+|.+.++|++|+.. +..+.| ..+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g----~~l 85 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDG----RWC 85 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETT----EEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCC----eEE
Confidence 34456699999999999999999999999999999998854 35999999999999999994 667888 677
Q ss_pred eeecccCC
Q 023820 180 RVREYDHR 187 (276)
Q Consensus 180 ~~~~~~~~ 187 (276)
.+.....+
T Consensus 86 ~v~~a~~~ 93 (103)
T 2cqg_A 86 DCKLPNSK 93 (103)
T ss_dssp EEECCCTT
T ss_pred EEEecCCC
Confidence 77766554
No 302
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.3e-13 Score=91.57 Aligned_cols=76 Identities=14% Similarity=0.217 Sum_probs=66.3
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecc
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 184 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~ 184 (276)
....+|||+|+ .+++++|.++|.+||+|..+.+. ...+||||+|.+.++|.+|+..|++..+.| ..+.|...
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVES----VQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETT----EEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEEEC
Confidence 34556999996 89999999999999999999884 567899999999999999999999999998 67777776
Q ss_pred cCCC
Q 023820 185 DHRR 188 (276)
Q Consensus 185 ~~~r 188 (276)
..+.
T Consensus 85 ~~~~ 88 (97)
T 1x5p_A 85 RKQP 88 (97)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 6543
No 303
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.51 E-value=8.9e-14 Score=100.98 Aligned_cols=77 Identities=6% Similarity=0.136 Sum_probs=66.7
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeE--EEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCc----eecccc
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCF--SQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDS----EFRNAF 174 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~--~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~----~~~g~~ 174 (276)
....+|||+|||..+++++|.++|.+||.|.. |.++.+. .+|||||+|.+. +|.+|+..|++. .+.|
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g-- 97 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG-- 97 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC--
Confidence 34556999999999999999999999999976 8998876 457999999999 999999999999 9998
Q ss_pred eeeEEeeecccC
Q 023820 175 SRAYVRVREYDH 186 (276)
Q Consensus 175 ~~~~i~~~~~~~ 186 (276)
..|.|.....
T Consensus 98 --r~l~V~~a~~ 107 (131)
T 2m2b_A 98 --KTINVEFAKG 107 (131)
T ss_dssp --CCCCCEECCC
T ss_pred --EEEEEEECCC
Confidence 5666665544
No 304
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.51 E-value=3.9e-14 Score=97.84 Aligned_cols=70 Identities=20% Similarity=0.248 Sum_probs=63.5
Q ss_pred CCCcEEEeCCCC------CCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecc-cc
Q 023820 106 RSEYLLVTGLPS------SASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRN-AF 174 (276)
Q Consensus 106 ~~~~l~v~nl~~------~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g-~~ 174 (276)
...+|||+|||. .+++++|.++|.+||.|..+.++.+.. .|||||+|.+.++|++|++.|+|..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 345699999999 999999999999999999999998864 4799999999999999999999999998 54
Q ss_pred e
Q 023820 175 S 175 (276)
Q Consensus 175 ~ 175 (276)
.
T Consensus 85 l 85 (100)
T 3ns6_A 85 L 85 (100)
T ss_dssp C
T ss_pred E
Confidence 3
No 305
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.51 E-value=2.4e-13 Score=101.84 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=69.2
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
....+|||+|||..+++++|.++|.+||+|..|.++.+.. .+||||+|.+.++|++|+..|++..|.| ..|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD----RIIR 112 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEEE
Confidence 3455699999999999999999999999999999998864 3599999999999999999999999999 6677
Q ss_pred eecccC
Q 023820 181 VREYDH 186 (276)
Q Consensus 181 ~~~~~~ 186 (276)
|..+..
T Consensus 113 V~~a~~ 118 (156)
T 1h2v_Z 113 TDWDAG 118 (156)
T ss_dssp EEEESC
T ss_pred EEECCC
Confidence 776654
No 306
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.51 E-value=1.5e-13 Score=92.42 Aligned_cols=74 Identities=16% Similarity=0.280 Sum_probs=63.4
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEE
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 179 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i 179 (276)
.....+|||+|||..+++++|.++|.+||.|..+.++.+.. .+||||+|.+.++|.+|++ +++..+.| ..+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g----~~i 82 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDG----RVI 82 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETT----EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECC----EEE
Confidence 34455699999999999999999999999999999998864 4699999999999999996 57788888 455
Q ss_pred eee
Q 023820 180 RVR 182 (276)
Q Consensus 180 ~~~ 182 (276)
.+.
T Consensus 83 ~v~ 85 (87)
T 3s7r_A 83 DPK 85 (87)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 307
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.51 E-value=4.3e-13 Score=96.40 Aligned_cols=78 Identities=19% Similarity=0.158 Sum_probs=68.1
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC---CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEee
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 181 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~ 181 (276)
....+|||+|||..+++++|.++|.+||.|..+.+..+. ..+||||+|.+.++|.+|+..|++..+.| ..+.|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V 108 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG----RPMDI 108 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSS----CEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECC----cEEEE
Confidence 344559999999999999999999999999999998875 45799999999999999999999999999 55666
Q ss_pred ecccC
Q 023820 182 REYDH 186 (276)
Q Consensus 182 ~~~~~ 186 (276)
..+..
T Consensus 109 ~~a~~ 113 (124)
T 2kt5_A 109 QLVAS 113 (124)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 65443
No 308
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.6e-13 Score=95.06 Aligned_cols=71 Identities=15% Similarity=0.268 Sum_probs=63.5
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC---CCCeEEEEeCCHHHHHHHHHhcCCceecccceee
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 177 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 177 (276)
...+|||+|||..+++++|.++|.+||+|..|.++.+. ..|||||+|.+.++|..|+. +++..+.|+....
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V 83 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLI 83 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEE
Confidence 44569999999999999999999999999999999875 45799999999999999999 9999999955433
No 309
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=1.2e-13 Score=99.26 Aligned_cols=76 Identities=11% Similarity=0.156 Sum_probs=64.9
Q ss_pred CCCcEEEeCCCCCCCHHHHH----HHhhhcCCeeEEEEeec-CCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 106 RSEYLLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRD-GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~----~~f~~~g~i~~~~~~~~-~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
+..+|||+|||..+++++|+ ++|.+||+|..|.+... ..+|||||+|.+.++|..|+..|||..+.| ..+.
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g----r~l~ 103 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQG----NPLV 103 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT----SCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC----CEEE
Confidence 35569999999999999876 68999999999888654 567899999999999999999999999999 4555
Q ss_pred eeccc
Q 023820 181 VREYD 185 (276)
Q Consensus 181 ~~~~~ 185 (276)
|..+.
T Consensus 104 V~~a~ 108 (127)
T 2a3j_A 104 ITFSE 108 (127)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 55544
No 310
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.51 E-value=1.5e-13 Score=92.77 Aligned_cols=74 Identities=18% Similarity=0.340 Sum_probs=66.3
Q ss_pred CcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeec
Q 023820 108 EYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 183 (276)
Q Consensus 108 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~ 183 (276)
.+|||+|||..+++++|.++|.+||.|..+.+..+. ..+||||+|.+.++|++|+ .|++..+.| ..+.+..
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g----~~l~V~~ 81 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG----RQIKVIP 81 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT----EECEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC----cEEEEEE
Confidence 469999999999999999999999999999998874 3569999999999999999 999999999 6677776
Q ss_pred ccC
Q 023820 184 YDH 186 (276)
Q Consensus 184 ~~~ 186 (276)
.+.
T Consensus 82 a~~ 84 (89)
T 3ucg_A 82 KRT 84 (89)
T ss_dssp TTT
T ss_pred ccC
Confidence 544
No 311
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=6.9e-13 Score=94.45 Aligned_cols=73 Identities=11% Similarity=0.109 Sum_probs=63.3
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCe-EEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecccC
Q 023820 110 LLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTT-GIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 186 (276)
Q Consensus 110 l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~-~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 186 (276)
|||+||++.+++++|.++|.+||.|..|.+... .|| |||+|.+.++|..|++.|+|..|.|.. +.++|..++.
T Consensus 28 l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~--~~l~V~~Ak~ 101 (124)
T 2e5i_A 28 LSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAGC--CTLKIEYARP 101 (124)
T ss_dssp EEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTB--SEEEEECCSC
T ss_pred EEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCC--eEEEEEEecC
Confidence 789999999999999999999999999999764 375 999999999999999999999998731 3566665544
No 312
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.50 E-value=3.9e-14 Score=95.88 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=63.2
Q ss_pred cEEEeCCCCCCCHHHHHHHhhhcC--CeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeee
Q 023820 109 YLLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 182 (276)
Q Consensus 109 ~l~v~nl~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~ 182 (276)
+|||+|||..+++++|.++|.+|| .|..+.++.+.. .|||||+|.+.++|++|++.|+|..+.| ..+.|.
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g----r~i~V~ 78 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG----QNPVVT 78 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSS----CCCEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCC----EEEEEE
Confidence 489999999999999999999999 999999998853 3599999999999999999999999999 556665
Q ss_pred cccC
Q 023820 183 EYDH 186 (276)
Q Consensus 183 ~~~~ 186 (276)
....
T Consensus 79 ~~~~ 82 (90)
T 3p5t_L 79 PSNK 82 (90)
T ss_dssp CC--
T ss_pred ECCC
Confidence 5443
No 313
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.50 E-value=4.2e-14 Score=93.74 Aligned_cols=66 Identities=11% Similarity=0.160 Sum_probs=59.8
Q ss_pred CcEEEeCCCCCC------CHHHHHHHhhhcCCeeEEEEeec--CCCCeEEEEeCCHHHHHHHHHhcCCceeccc
Q 023820 108 EYLLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRD--GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 108 ~~l~v~nl~~~~------~~~~l~~~f~~~g~i~~~~~~~~--~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 173 (276)
.+|||+|||..+ ++++|.++|.+||+|..+.++.. ...|||||+|.+.++|.+|+..|+|..+.|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 469999999999 77999999999999999998743 3467999999999999999999999999995
No 314
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.50 E-value=1.6e-13 Score=97.37 Aligned_cols=78 Identities=22% Similarity=0.287 Sum_probs=67.6
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC-CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeee
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 182 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~ 182 (276)
+....+|||+|||..+++++|.++|.+||.|..+.++.+. ..+||||+|.+.++|..|+..|+|..+.| ..+.+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~ 80 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSN----RYLVVL 80 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSS----CBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEE
Confidence 4455679999999999999999999999999999998764 46799999999999999999999999999 445555
Q ss_pred ccc
Q 023820 183 EYD 185 (276)
Q Consensus 183 ~~~ 185 (276)
.+.
T Consensus 81 ~a~ 83 (115)
T 3lqv_A 81 YYN 83 (115)
T ss_dssp ECC
T ss_pred Eec
Confidence 443
No 315
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.49 E-value=3.4e-13 Score=99.07 Aligned_cols=76 Identities=22% Similarity=0.248 Sum_probs=66.4
Q ss_pred CCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeE
Q 023820 103 VSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 178 (276)
Q Consensus 103 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 178 (276)
......+|||+|||..+++++|.++|.+||+|..+.++.++ ..+||||+|.+.++|++|++.|++..+.| ..
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 134 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----RT 134 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT----EE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC----EE
Confidence 34455569999999999999999999999999999998773 46799999999999999999999999999 45
Q ss_pred Eeee
Q 023820 179 VRVR 182 (276)
Q Consensus 179 i~~~ 182 (276)
+.|.
T Consensus 135 l~v~ 138 (140)
T 2ku7_A 135 IRVN 138 (140)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 316
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.49 E-value=2.4e-13 Score=95.34 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=65.7
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEE
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 179 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i 179 (276)
+....+|||+|||..+++++|.++|..||.|..+.+..+. ..|||||+|.+.++|.+|+..+ +..+.| ..+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g----~~l 96 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS----KTI 96 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT----EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC----EEE
Confidence 3445669999999999999999999999999999998875 3579999999999999999987 488888 667
Q ss_pred eeecccCC
Q 023820 180 RVREYDHR 187 (276)
Q Consensus 180 ~~~~~~~~ 187 (276)
.+.....+
T Consensus 97 ~V~~a~~~ 104 (109)
T 2rs2_A 97 DPKVAFPR 104 (109)
T ss_dssp EEEECCCC
T ss_pred EEEEccCC
Confidence 77666543
No 317
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.5e-13 Score=96.44 Aligned_cols=76 Identities=18% Similarity=0.257 Sum_probs=67.6
Q ss_pred CCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeee
Q 023820 107 SEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 182 (276)
Q Consensus 107 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~ 182 (276)
..+|||+|||..+++++|.++|.+||.|..+.++.+. ..+||||+|.+.++|++|+.. ++..+.| ..+.|.
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g----~~l~V~ 101 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG----RVVEPK 101 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT----EEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC----EEEEEE
Confidence 3459999999999999999999999999999999875 357999999999999999998 9999999 677777
Q ss_pred cccCC
Q 023820 183 EYDHR 187 (276)
Q Consensus 183 ~~~~~ 187 (276)
....+
T Consensus 102 ~a~~~ 106 (116)
T 1x4b_A 102 RAVAR 106 (116)
T ss_dssp CCSSC
T ss_pred ECCCC
Confidence 76654
No 318
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.49 E-value=1.6e-13 Score=95.59 Aligned_cols=78 Identities=12% Similarity=0.164 Sum_probs=66.0
Q ss_pred CCCcEEEeCCCCCC------CHHHHHHHhhhcCCeeEEEEeec--CCCCeEEEEeCCHHHHHHHHHhcCCceecccceee
Q 023820 106 RSEYLLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRD--GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 177 (276)
Q Consensus 106 ~~~~l~v~nl~~~~------~~~~l~~~f~~~g~i~~~~~~~~--~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 177 (276)
...+|||+|||..+ ++++|.++|.+||.|..+.++.. ...|||||+|.+.++|..|+..|+|..+.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~---~ 90 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ---H 90 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT---C
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC---c
Confidence 34569999999999 78999999999999999998843 3457999999999999999999999999993 1
Q ss_pred EEeeecccC
Q 023820 178 YVRVREYDH 186 (276)
Q Consensus 178 ~i~~~~~~~ 186 (276)
.+.|.....
T Consensus 91 ~l~V~~a~~ 99 (105)
T 2nlw_A 91 TFRVNLFTD 99 (105)
T ss_dssp EEEEECSCC
T ss_pred eEEEEEcch
Confidence 566665543
No 319
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.1e-13 Score=96.69 Aligned_cols=64 Identities=20% Similarity=0.222 Sum_probs=58.1
Q ss_pred CCCCcEEE--eCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCcee
Q 023820 105 RRSEYLLV--TGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 170 (276)
Q Consensus 105 ~~~~~l~v--~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~ 170 (276)
.++.+||| +||+..+++++|+++|.+||.|..+.+.. .++||||+|.+.++|++|++.|||.++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34566999 77999999999999999999999988865 367999999999999999999999988
No 320
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=3.8e-13 Score=91.14 Aligned_cols=76 Identities=14% Similarity=0.252 Sum_probs=66.3
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC---CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEee
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 181 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~ 181 (276)
....+|||+|||..+++++|.++|..| .|..+.++.+.. .+||||+|.+.++|++|+. |++..+.| ..|.|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g----r~i~v 81 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG----RYIEV 81 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT----EEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCC----cEEEE
Confidence 344569999999999999999999999 999999998843 3599999999999999999 99999999 56776
Q ss_pred ecccC
Q 023820 182 REYDH 186 (276)
Q Consensus 182 ~~~~~ 186 (276)
..+..
T Consensus 82 ~~a~~ 86 (91)
T 2dgw_A 82 FREKS 86 (91)
T ss_dssp EEESS
T ss_pred EECCc
Confidence 66544
No 321
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.8e-13 Score=93.75 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=60.2
Q ss_pred CCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC---CCeEEEEeCCHHHHHHHHHhcCCceecccc
Q 023820 103 VSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 174 (276)
Q Consensus 103 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 174 (276)
.+....+|||+|||+.+++++|+++|.+||. +.|.++.+.. ++||||+|.+.++|++|++ +++..+.|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRY 83 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcE
Confidence 3444556999999999999999999999995 4899988863 3599999999999999995 7999999953
No 322
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.48 E-value=3.3e-14 Score=103.66 Aligned_cols=117 Identities=10% Similarity=0.098 Sum_probs=63.1
Q ss_pred ceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCCHHHHH
Q 023820 46 GYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSASWQDLK 125 (276)
Q Consensus 46 g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 125 (276)
++||.+|.-++.+..++..+..+ +.|...--. .........+....+|||+|||.++++++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~----------------~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~ 64 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRG----------------SGDSEFTVQSTTGHCVHMRGLPYKATENDIY 64 (139)
T ss_dssp ------------------------------------------------------------CCCCEECCSCCTTCCHHHHH
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCC----------------CCCcccCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 57888888888777776654432 222211000 0000111123344569999999999999999
Q ss_pred HHhhhcCCeeEEEEeecC---CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeeccc
Q 023820 126 DHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 185 (276)
Q Consensus 126 ~~f~~~g~i~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~~ 185 (276)
++|.+|| |+.|.++.+. .++||||+|.+.++|++|+ .+++..+.|+ .|.|....
T Consensus 65 ~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR----~i~V~~a~ 121 (139)
T 2hgn_A 65 NFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHR----YIELFLNS 121 (139)
T ss_dssp HHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSC----CCCCEECC
T ss_pred HHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCE----EEEEEECC
Confidence 9999999 7799998775 3579999999999999999 7999999994 45554443
No 323
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=3.5e-13 Score=93.37 Aligned_cols=79 Identities=24% Similarity=0.325 Sum_probs=64.8
Q ss_pred CCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeE
Q 023820 103 VSRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 178 (276)
Q Consensus 103 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 178 (276)
......+|||+|||..+++++|.++|..|+ .+.++.+. ..+||||+|.+.++|++|++.|++..+.| ..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 83 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG----NK 83 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC----eE
Confidence 344556699999999999999999999874 45555554 23699999999999999999999999999 67
Q ss_pred EeeecccCCC
Q 023820 179 VRVREYDHRR 188 (276)
Q Consensus 179 i~~~~~~~~r 188 (276)
|.|..+..+.
T Consensus 84 l~V~~a~~~~ 93 (102)
T 2fc8_A 84 VTLDWAKPKG 93 (102)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 7777766543
No 324
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.48 E-value=2.9e-13 Score=96.83 Aligned_cols=74 Identities=19% Similarity=0.224 Sum_probs=64.3
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCe-EEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecccC
Q 023820 110 LLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTT-GIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 186 (276)
Q Consensus 110 l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~-~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~~~ 186 (276)
|+|+||++.+++++|.++|.+||+|..|.+.... +++ |||+|.+.++|+.|++.|+|..+.|. .+.++++.++.
T Consensus 31 I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~--~~~LrI~~ak~ 105 (130)
T 3zzy_A 31 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNA--CCTLRIDFSKL 105 (130)
T ss_dssp EEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEETT--EEEEEEEECSC
T ss_pred EEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecCC--CcEEEEEecCC
Confidence 8899999999999999999999999999887764 456 99999999999999999999999873 24566665544
No 325
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.47 E-value=1.4e-13 Score=94.43 Aligned_cols=78 Identities=15% Similarity=0.216 Sum_probs=67.2
Q ss_pred CCCCcEEEeCCCCCCCHHHHH----HHhhhcCCeeEEEEeec-CCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEE
Q 023820 105 RRSEYLLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRD-GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 179 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~i~~~~~~~~-~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i 179 (276)
.+..+|||+|||..+++++|. ++|.+||.|..+.+... ...+||||+|.+.++|..|+..|+|..+.| ..+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l 81 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD----KPM 81 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC----cEE
Confidence 445669999999999999999 99999999999988743 345799999999999999999999999998 666
Q ss_pred eeecccC
Q 023820 180 RVREYDH 186 (276)
Q Consensus 180 ~~~~~~~ 186 (276)
.+.....
T Consensus 82 ~v~~a~~ 88 (97)
T 1nu4_A 82 RIQYAKT 88 (97)
T ss_dssp EEEECSS
T ss_pred EEEEccC
Confidence 6665544
No 326
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.47 E-value=1.1e-13 Score=94.65 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=63.9
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEee
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 181 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~ 181 (276)
...+|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|++|++.|++..+.| ..+.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----r~l~v 89 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS----RKVKL 89 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC----cEEEE
Confidence 345699999999999999999999999998877777643 3699999999999999999999999999 55555
Q ss_pred ec
Q 023820 182 RE 183 (276)
Q Consensus 182 ~~ 183 (276)
..
T Consensus 90 ~~ 91 (95)
T 2ek1_A 90 SG 91 (95)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 327
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=8.8e-14 Score=98.51 Aligned_cols=73 Identities=18% Similarity=0.235 Sum_probs=65.1
Q ss_pred CcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeec
Q 023820 108 EYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 183 (276)
Q Consensus 108 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~ 183 (276)
.+|||+|||..+++++|.++|..||.|..+.++.+. ..+||||+|.+.++|++|+ .|++..+.| ..|.|..
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~V~~ 100 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG----VPIIVQA 100 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT----EEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC----eEEEEEe
Confidence 459999999999999999999999999999998765 3579999999999999999 999999999 5666665
Q ss_pred cc
Q 023820 184 YD 185 (276)
Q Consensus 184 ~~ 185 (276)
..
T Consensus 101 a~ 102 (114)
T 2cq4_A 101 SQ 102 (114)
T ss_dssp HH
T ss_pred cC
Confidence 43
No 328
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.3e-13 Score=97.00 Aligned_cols=72 Identities=18% Similarity=0.287 Sum_probs=63.3
Q ss_pred CCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecc
Q 023820 107 SEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 184 (276)
Q Consensus 107 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~ 184 (276)
..+|||+|||..+++++|.++|.+||.|..+.+.. .++||||+|.+.++|+.|+..|||..+.|+ .+.|...
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~----~l~V~~a 81 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHV----PLYLEWA 81 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSS----BCEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCe----EEEEEEC
Confidence 34599999999999999999999999999998874 567999999999999999999999999994 4455443
No 329
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.47 E-value=7.6e-14 Score=96.38 Aligned_cols=75 Identities=17% Similarity=0.305 Sum_probs=63.7
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC-----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEE
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 179 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~-----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i 179 (276)
....+|||+|||..+++++|.++|..|| |..+.+..+. ..|||||+|.+.++|.+|+ .|+|..+.| ..+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g----~~l 90 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN----RRI 90 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT----BCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECC----eEE
Confidence 3445599999999999999999999999 9999998775 3579999999999999999 899999999 455
Q ss_pred eeeccc
Q 023820 180 RVREYD 185 (276)
Q Consensus 180 ~~~~~~ 185 (276)
.+..+.
T Consensus 91 ~V~~a~ 96 (100)
T 2j76_E 91 RVDVAD 96 (100)
T ss_dssp CCEECC
T ss_pred EEEecc
Confidence 555544
No 330
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=5.5e-13 Score=92.71 Aligned_cols=75 Identities=16% Similarity=0.214 Sum_probs=63.1
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeE-EEEeecC---CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEe
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 180 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~-~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~ 180 (276)
....+|||+|||..+++++|.++|.+||.|.. +.++.+. ..|||||+|.+.++|++|+.. ++..++|+ .|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr----~i~ 87 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHR----YIE 87 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSS----CCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCc----EEE
Confidence 34455999999999999999999999999987 7777663 457999999999999999997 99999995 444
Q ss_pred eecc
Q 023820 181 VREY 184 (276)
Q Consensus 181 ~~~~ 184 (276)
|...
T Consensus 88 v~~~ 91 (104)
T 1wg5_A 88 IFKS 91 (104)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 4443
No 331
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=2.9e-13 Score=89.92 Aligned_cols=72 Identities=19% Similarity=0.287 Sum_probs=61.3
Q ss_pred CCCc-EEEeCCCCCCCHHH----HHHHhhhcC-CeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEE
Q 023820 106 RSEY-LLVTGLPSSASWQD----LKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 179 (276)
Q Consensus 106 ~~~~-l~v~nl~~~~~~~~----l~~~f~~~g-~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i 179 (276)
+..+ |||+|||..+++++ |.++|.+|| +|..| .+|+|||.|.+.++|+.|++.|+|..+.| +.|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~g----r~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVFG----NRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSSS----SCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccCC----ceE
Confidence 4555 99999999999887 558999994 99988 23899999999999999999999999999 666
Q ss_pred eeecccCC
Q 023820 180 RVREYDHR 187 (276)
Q Consensus 180 ~~~~~~~~ 187 (276)
++..+..+
T Consensus 77 ~v~~A~~~ 84 (96)
T 2diu_A 77 IVSFTPKN 84 (96)
T ss_dssp EEESSCCS
T ss_pred EEEecCCC
Confidence 66665544
No 332
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.47 E-value=1.3e-13 Score=94.49 Aligned_cols=77 Identities=14% Similarity=0.185 Sum_probs=65.3
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecc
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 184 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~ 184 (276)
....+|||+|||..+++++|.++|.+||.|..+ .......+||||+|.+.++|.+|+..|++..+.| ..+.+...
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG----RSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT----EEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEEc
Confidence 344569999999999999999999999998877 3333456799999999999999999999999999 66777766
Q ss_pred cC
Q 023820 185 DH 186 (276)
Q Consensus 185 ~~ 186 (276)
..
T Consensus 89 ~~ 90 (96)
T 1fjc_A 89 GE 90 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 333
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.7e-13 Score=95.94 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=66.3
Q ss_pred CCCCCCcEEEeCCCCCCCHHHHHHHhhhcCCe-eEEEEeecC---CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeE
Q 023820 103 VSRRSEYLLVTGLPSSASWQDLKDHMRRAGDV-CFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 178 (276)
Q Consensus 103 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i-~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 178 (276)
.+....+|||+|||..+++++|.++|..||.| ..|.++.+. ..+||||+|.+.++|++|+.. ++..+.| ..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g----r~ 85 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNG----RE 85 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETT----EE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCC----eE
Confidence 34445669999999999999999999999999 888988775 457999999999999999997 9999999 55
Q ss_pred Eeeeccc
Q 023820 179 VRVREYD 185 (276)
Q Consensus 179 i~~~~~~ 185 (276)
|.|....
T Consensus 86 i~v~~a~ 92 (114)
T 2cpy_A 86 AFVHVVT 92 (114)
T ss_dssp EEEEEEC
T ss_pred EEEEECC
Confidence 6655443
No 334
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.47 E-value=4.1e-13 Score=100.22 Aligned_cols=75 Identities=17% Similarity=0.134 Sum_probs=65.5
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcC--CeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEE
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 179 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i 179 (276)
...+|||+|||..+++++|.++|..|| .|..+.++.+.. .|||||+|.+.++|.+|+..|+|..+.| ..|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G----r~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG----EKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT----EEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----eEe
Confidence 345699999999999999999999999 999999998853 3599999999999999999999999999 556
Q ss_pred eeecc
Q 023820 180 RVREY 184 (276)
Q Consensus 180 ~~~~~ 184 (276)
.|..+
T Consensus 130 ~V~~a 134 (156)
T 3n9u_C 130 DVRPA 134 (156)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 65544
No 335
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.46 E-value=2.5e-13 Score=91.25 Aligned_cols=66 Identities=18% Similarity=0.320 Sum_probs=60.0
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhc----C-------CeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceeccc
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRA----G-------DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 173 (276)
....+|||+|||..+++++|.++|.+| | .|..+.+..+ ++||||+|.+.++|.+|+ .|++..+.|+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 345569999999999999999999999 8 8999888765 679999999999999999 9999999993
No 336
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.7e-13 Score=93.59 Aligned_cols=76 Identities=22% Similarity=0.348 Sum_probs=66.7
Q ss_pred CCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeee
Q 023820 107 SEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 182 (276)
Q Consensus 107 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~ 182 (276)
..+|||+|||..+++++|.++|.+||.|..+.++.+.. .+||||+|.+.++|.+|++.|+|..+.| ..+.+.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~ 83 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG----RALRVD 83 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSS----SCBEEE
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC----cEEEEE
Confidence 45699999999999999999999999999999998753 4699999999999999999999999999 455665
Q ss_pred cccC
Q 023820 183 EYDH 186 (276)
Q Consensus 183 ~~~~ 186 (276)
....
T Consensus 84 ~a~~ 87 (104)
T 1p1t_A 84 NAAS 87 (104)
T ss_dssp ETTC
T ss_pred eCCC
Confidence 5443
No 337
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.46 E-value=1.3e-13 Score=89.86 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=59.3
Q ss_pred cEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccc
Q 023820 109 YLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 174 (276)
Q Consensus 109 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 174 (276)
.|||+|||..+++++|.++|.+||+|..+.++.++ ..+||||+|.+.++|++|++ +++..+.|+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~ 69 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKM 69 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEE
Confidence 38999999999999999999999999999998775 35799999999999999998 9999999943
No 338
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.46 E-value=2.7e-13 Score=91.28 Aligned_cols=72 Identities=24% Similarity=0.318 Sum_probs=64.4
Q ss_pred CCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeeccc
Q 023820 107 SEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 185 (276)
Q Consensus 107 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~~ 185 (276)
..+|||+|||..+++++|+++|.+| +|..+.+. ...+||||+|.+.++|++|++.|++..+.| ..+.+....
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~V~~a~ 76 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG----KDLIVQLQP 76 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETT----EEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECC----cEEEEEEcC
Confidence 4569999999999999999999999 99999885 667899999999999999999999999999 566666553
No 339
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.9e-13 Score=94.33 Aligned_cols=78 Identities=14% Similarity=0.200 Sum_probs=66.3
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCC-eeEEEEe-ec----CCCCeEEEEeCCHHHHHHHHHhcC--Cceecccceee
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGD-VCFSQVF-RD----GSGTTGIVDYTNYDDMKHAIKKLD--DSEFRNAFSRA 177 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~-i~~~~~~-~~----~~~~~~fv~f~~~~~a~~a~~~l~--~~~~~g~~~~~ 177 (276)
...+|||+|||..+++++|.++|.+||. |..+.++ .+ ...+||||+|.+.++|..|+..|+ +..+.| .
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g----~ 82 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG----H 82 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT----B
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC----C
Confidence 4456999999999999999999999998 9999987 44 346799999999999999999996 588998 5
Q ss_pred EEeeecccCC
Q 023820 178 YVRVREYDHR 187 (276)
Q Consensus 178 ~i~~~~~~~~ 187 (276)
.+.|..+...
T Consensus 83 ~l~V~~a~~~ 92 (109)
T 2dis_A 83 QIAVDWAEPE 92 (109)
T ss_dssp CCEEEESCSS
T ss_pred eEEEEEcCCC
Confidence 6666665543
No 340
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.45 E-value=6.1e-13 Score=95.61 Aligned_cols=75 Identities=16% Similarity=0.315 Sum_probs=66.2
Q ss_pred CCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeee
Q 023820 107 SEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 182 (276)
Q Consensus 107 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~ 182 (276)
..+|||+|||..+++++|.++|.+||.|..+.++.+. ..+||||+|.+.++|..|+ .|++..+.| ..+.|.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~V~ 110 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG----RTIKVL 110 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT----EECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC----eEEEEE
Confidence 3459999999999999999999999999999998874 3469999999999999999 899999999 667777
Q ss_pred cccC
Q 023820 183 EYDH 186 (276)
Q Consensus 183 ~~~~ 186 (276)
....
T Consensus 111 ~a~~ 114 (124)
T 2jwn_A 111 PKRT 114 (124)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 6553
No 341
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=3.7e-13 Score=94.01 Aligned_cols=71 Identities=25% Similarity=0.358 Sum_probs=62.2
Q ss_pred CcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC---CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecc
Q 023820 108 EYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 184 (276)
Q Consensus 108 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~ 184 (276)
.+|||+|||..+++++|+++|..| .|..|.++.+. ..|||||+|.+.++|++|+ .+++..++| +.|.|...
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g----r~i~V~~a 90 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ----RYVEVSPA 90 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETT----EEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECC----eEEEEEEC
Confidence 359999999999999999999999 89999998775 4579999999999999999 699999999 45555543
No 342
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.5e-12 Score=92.12 Aligned_cols=81 Identities=16% Similarity=0.258 Sum_probs=67.7
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC---CCeEEEEeCCHHHHHHHHHhcCCceecccc----eee
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF----SRA 177 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~----~~~ 177 (276)
....+|||+|||..+++++|.++|.+||.|..+.++.+.. .+||||+|.+.++|.+|+..|+|..+.+.. ...
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 3445699999999999999999999999999999998863 359999999999999999999999997654 234
Q ss_pred EEeeeccc
Q 023820 178 YVRVREYD 185 (276)
Q Consensus 178 ~i~~~~~~ 185 (276)
.+.+....
T Consensus 103 ~l~v~~a~ 110 (114)
T 1x5o_A 103 PLLCKFSG 110 (114)
T ss_dssp CBEEEECC
T ss_pred ceeEEccC
Confidence 45554443
No 343
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=1.8e-13 Score=89.67 Aligned_cols=65 Identities=17% Similarity=0.285 Sum_probs=59.7
Q ss_pred cEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccc
Q 023820 109 YLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 174 (276)
Q Consensus 109 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 174 (276)
+|||+|||..+++++|.++|.+||+|..+.+..++. .+||||+|.+.++|.+|+..++ ..+.|+.
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~ 70 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKT 70 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEE
Confidence 599999999999999999999999999999988753 5799999999999999999999 8888843
No 344
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.43 E-value=6.6e-13 Score=94.46 Aligned_cols=74 Identities=22% Similarity=0.288 Sum_probs=64.3
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCC---eeEEEEeecCC---CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEE
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 179 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i 179 (276)
...+|||+|||..+++++|.++|..||. |..|.++.+.. .|||||+|.+.++|++|++ +++..+.| ..|
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g----r~i 90 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGH----RYI 90 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETT----EEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECC----eEE
Confidence 3455999999999999999999999999 88999988754 3599999999999999999 99999999 455
Q ss_pred eeecc
Q 023820 180 RVREY 184 (276)
Q Consensus 180 ~~~~~ 184 (276)
.|...
T Consensus 91 ~V~~a 95 (118)
T 2db1_A 91 EVFKS 95 (118)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 55543
No 345
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.42 E-value=8.7e-13 Score=88.87 Aligned_cols=76 Identities=9% Similarity=0.103 Sum_probs=58.5
Q ss_pred CCCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeec
Q 023820 104 SRRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 183 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~ 183 (276)
+....+|||+|||.++++++|+++|.+||+|..+.++.+ .+|||||+|.+.++|++ +++..+.+. ...+.+..
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~~~--g~~v~v~~ 80 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLIIK--GISVHISN 80 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEEET--TEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcccC--CEEEEEEE
Confidence 345566999999999999999999999999999999876 67899999999999983 556655421 14555555
Q ss_pred ccC
Q 023820 184 YDH 186 (276)
Q Consensus 184 ~~~ 186 (276)
+..
T Consensus 81 a~~ 83 (89)
T 3d2w_A 81 AEP 83 (89)
T ss_dssp CC-
T ss_pred cCC
Confidence 443
No 346
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.42 E-value=4.4e-13 Score=97.38 Aligned_cols=74 Identities=20% Similarity=0.263 Sum_probs=64.4
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCC---eeEEEEeecCC---CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEE
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 179 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i 179 (276)
...+|||+|||+.+++++|.++|.+||. |..|.++.+.. +|||||+|.+.++|++|++ +++..+.| +.|
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g----r~i 117 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGH----RYI 117 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSS----SEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECC----EEE
Confidence 3455999999999999999999999999 88999988754 3699999999999999999 99999999 455
Q ss_pred eeecc
Q 023820 180 RVREY 184 (276)
Q Consensus 180 ~~~~~ 184 (276)
.|...
T Consensus 118 ~V~~a 122 (136)
T 2hgl_A 118 EVFKS 122 (136)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 55543
No 347
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.41 E-value=2.1e-12 Score=98.43 Aligned_cols=70 Identities=21% Similarity=0.157 Sum_probs=63.2
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC---CCCeEEEEeCCHHHHHHHHHhcCCceecccce
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 175 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 175 (276)
...+|||+|||..+++++|.++|.+||+|..|.+..+. ..+||||+|.+.++|++|++.|++..+.|+..
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l 159 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 159 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEE
Confidence 34459999999999999999999999999999998865 45799999999999999999999999999544
No 348
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.40 E-value=1.1e-12 Score=90.69 Aligned_cols=75 Identities=15% Similarity=0.149 Sum_probs=62.6
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEee----cCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEee
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFR----DGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 181 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~----~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~ 181 (276)
...+|||+|||..+++++|.++|.+||.|.. .++. ....+||||+|.+.++|++|++ |++..+.| ..+.|
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g----~~l~V 89 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG----NEIKL 89 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT----BCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC----cEEEE
Confidence 3445999999999999999999999998876 3322 3567899999999999999999 99999998 56666
Q ss_pred ecccC
Q 023820 182 REYDH 186 (276)
Q Consensus 182 ~~~~~ 186 (276)
.....
T Consensus 90 ~~a~~ 94 (101)
T 1fj7_A 90 EKPKG 94 (101)
T ss_dssp ECCSC
T ss_pred EEcCC
Confidence 66544
No 349
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=7.2e-13 Score=89.17 Aligned_cols=73 Identities=11% Similarity=0.150 Sum_probs=59.2
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCcee--cccceeeEEeeec
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF--RNAFSRAYVRVRE 183 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~--~g~~~~~~i~~~~ 183 (276)
...+|||+|||..+++++|.++|.+||+|..+.++.+ .++||||+|.+.++|++| ++..+ .| ..+.+..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~----~~~~~~~~g----~~l~v~~ 74 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSL----CGEDLIIKG----ISVHISN 74 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHT----TTCEEEETT----EEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHH----hcCCceeCC----EEEEEEe
Confidence 3466999999999999999999999999999999876 678999999999999754 44444 44 5666666
Q ss_pred ccCC
Q 023820 184 YDHR 187 (276)
Q Consensus 184 ~~~~ 187 (276)
...+
T Consensus 75 a~~~ 78 (88)
T 1wf0_A 75 AEPK 78 (88)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 5543
No 350
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=8.1e-13 Score=94.94 Aligned_cols=70 Identities=21% Similarity=0.222 Sum_probs=59.0
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeec-C---CCCeEEEEeCCHHHHHHHHHhcCCceecccce
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD-G---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 175 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~-~---~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 175 (276)
....+|||+|||..+++++|.++|..||.|..+.++.+ . ..|||||+|.+.++|.+|+. |++..+.|+..
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 96 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFI 96 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEE
Confidence 34456999999999999999999999999987444433 2 34699999999999999999 99999999543
No 351
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.40 E-value=5.6e-13 Score=93.18 Aligned_cols=68 Identities=10% Similarity=0.151 Sum_probs=60.7
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCC---eeEEEEeecC---CCCeEEEEeCCHHHHHHHHHhcCCceecccc
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 174 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~---i~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 174 (276)
...+|||+|||..+++++|.++|..||. |..+.++.+. ..|||||+|.+.++|++|+. +++..++|+.
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 3445999999999999999999999988 8999998775 45799999999999999999 9999999843
No 352
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.40 E-value=2e-13 Score=92.33 Aligned_cols=72 Identities=26% Similarity=0.373 Sum_probs=63.1
Q ss_pred cEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecc
Q 023820 109 YLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 184 (276)
Q Consensus 109 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~ 184 (276)
+|||+|||..+++++|.++|.+||+|..+.+..+. ..+||||+|.+.+ |.+|+..|+|..+.| ..+.+..+
T Consensus 3 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g----~~l~V~~a 77 (90)
T 2ki2_A 3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMG----RTIRVTEA 77 (90)
T ss_dssp EEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSS----SSCSEEEC
T ss_pred EEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECC----eEEEEEEc
Confidence 59999999999999999999999999999998774 3579999999999 999999999999999 44555544
Q ss_pred c
Q 023820 185 D 185 (276)
Q Consensus 185 ~ 185 (276)
.
T Consensus 78 ~ 78 (90)
T 2ki2_A 78 N 78 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 353
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.39 E-value=1.7e-12 Score=95.69 Aligned_cols=79 Identities=14% Similarity=0.084 Sum_probs=66.0
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEE--------EEe-ecCCCCeEEEEeCCHHHHHHHHHhcCCceecccce
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFS--------QVF-RDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 175 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~--------~~~-~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 175 (276)
....+|||+|||..+++++|.++|.+||.|..+ .+. .....+||||+|.+.++|..|+..|+|..+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g--- 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG--- 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC---
Confidence 345569999999999999999999999998763 332 34566899999999999999999999999999
Q ss_pred eeEEeeecccCC
Q 023820 176 RAYVRVREYDHR 187 (276)
Q Consensus 176 ~~~i~~~~~~~~ 187 (276)
..+.|..+...
T Consensus 120 -~~l~V~~a~~~ 130 (143)
T 3egn_A 120 -KPMVVQFARSA 130 (143)
T ss_dssp -EECEEEECCCS
T ss_pred -cEEEEEECCCC
Confidence 66777766543
No 354
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.39 E-value=4.6e-13 Score=87.25 Aligned_cols=65 Identities=12% Similarity=0.177 Sum_probs=58.5
Q ss_pred cEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceecccc
Q 023820 109 YLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 174 (276)
Q Consensus 109 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 174 (276)
+|||+|||..+++++|.++|.+||+|..+.+..+. ..+||||+|.+.++|..|+.. ++..+.|+.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~ 69 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSK 69 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEE
Confidence 48999999999999999999999999999998764 457999999999999999995 888888843
No 355
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.38 E-value=2.3e-12 Score=91.99 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=64.5
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecc
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 184 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~ 184 (276)
....+|||+|+ .+++++|.++|.+||+|..|.+. ...+||||+|.+.++|.+|+..|++..+.| ..+.|...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g----~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVES----VQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSS----CBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEEe
Confidence 34556999996 69999999999999999999986 567899999999999999999999999998 56666655
Q ss_pred cCC
Q 023820 185 DHR 187 (276)
Q Consensus 185 ~~~ 187 (276)
...
T Consensus 109 ~~~ 111 (121)
T 2bz2_A 109 RKQ 111 (121)
T ss_dssp CSS
T ss_pred CCC
Confidence 443
No 356
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.38 E-value=1.4e-12 Score=103.67 Aligned_cols=69 Identities=16% Similarity=0.184 Sum_probs=61.9
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcC--CeeEEEEeecCC----CCeEEEEeCCHHHHHHHHHhcCCceecccc
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 174 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 174 (276)
...+|||+||+..+++++|+++|.+|| .|..|.|+.+.. ++||||+|.+.++|++||+.|++..|.|+.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~ 141 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN 141 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEE
Confidence 344599999999999999999999999 999999998853 359999999999999999999999999943
No 357
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=3.2e-12 Score=89.88 Aligned_cols=75 Identities=17% Similarity=0.222 Sum_probs=66.7
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecC-HHHHHHHHHhcC--CCccCCceEEEEE
Q 023820 4 RASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEE-ARDAEDAIRGRD--GYDFDGHRLRVEL 79 (276)
Q Consensus 4 ~~~~~l~v~nL~~~-~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~-~e~a~~A~~~ln--g~~~~g~~i~v~~ 79 (276)
.+.+.|+|+||++. ++.++|+++|++||+|..|.+..+. ..|||+|.+ +++|..|+..|| +..|.|..++++.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~---~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA---KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC---SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC---CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 46789999999999 9999999999999999999997543 379999999 899999999995 7889999999987
Q ss_pred cc
Q 023820 80 AH 81 (276)
Q Consensus 80 a~ 81 (276)
..
T Consensus 93 L~ 94 (121)
T 1owx_A 93 LE 94 (121)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 358
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.2e-11 Score=87.01 Aligned_cols=81 Identities=14% Similarity=0.250 Sum_probs=66.1
Q ss_pred CCCCCCcEEEeCCCCCCC-----------HHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceec
Q 023820 103 VSRRSEYLLVTGLPSSAS-----------WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 171 (276)
Q Consensus 103 ~~~~~~~l~v~nl~~~~~-----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~ 171 (276)
.+..+.+|+|.||..... +++|.++|.+||+|..+.+......|||||+|.+.++|.+|+..|+|..+.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 445667799999954432 589999999999999997754456789999999999999999999999999
Q ss_pred ccceeeEEeeecccCC
Q 023820 172 NAFSRAYVRVREYDHR 187 (276)
Q Consensus 172 g~~~~~~i~~~~~~~~ 187 (276)
| ..+.+......
T Consensus 91 g----r~l~v~~a~~~ 102 (112)
T 2dit_A 91 G----RQITAQAWDGT 102 (112)
T ss_dssp T----EECEEEECCSC
T ss_pred C----cEEEEEEeCCC
Confidence 9 56666665443
No 359
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.37 E-value=1.8e-12 Score=92.71 Aligned_cols=68 Identities=10% Similarity=0.219 Sum_probs=58.7
Q ss_pred CCCCcEEEeCCCCCCCHHHHHHHhhhcCCee--EEEEeecC---CCCeEEEEeCCHHHHHHHHHhcCCceecccc
Q 023820 105 RRSEYLLVTGLPSSASWQDLKDHMRRAGDVC--FSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 174 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~--~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 174 (276)
....+|||+|||+.+++++|+++|.+| .|. .|.++.+. ..|||||+|.+.++|++|++. ++..+.|+.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~ 112 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRY 112 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEE
Confidence 344569999999999999999999999 677 88888775 457999999999999999985 778999853
No 360
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-12 Score=92.84 Aligned_cols=73 Identities=11% Similarity=0.136 Sum_probs=61.5
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCe----eEEEEeecCC---CCeEEEEeCCHHHHHHHHHhcCCceecccceeeE
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 178 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i----~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 178 (276)
...+|||+|||+.+++++|+++|.+||.| ..|.++.+.. .|||||+|.+.++|++|++. ++..+.|+ .
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR----~ 96 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKR----Y 96 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSC----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe----E
Confidence 34569999999999999999999999975 5788887743 36999999999999999996 99999884 4
Q ss_pred Eeeec
Q 023820 179 VRVRE 183 (276)
Q Consensus 179 i~~~~ 183 (276)
|.|..
T Consensus 97 i~V~~ 101 (123)
T 2dha_A 97 IELFR 101 (123)
T ss_dssp ECCEE
T ss_pred EEEEE
Confidence 55543
No 361
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=2.1e-12 Score=91.30 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=52.7
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeec-------CCCCeEEEEeCCHHHHHHHHHhc
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD-------GSGTTGIVDYTNYDDMKHAIKKL 165 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~-------~~~~~~fv~f~~~~~a~~a~~~l 165 (276)
...+|||+|||..+++++|.++|.+||+|. +.++.+ ...+||||+|.+.++|++|++.|
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 456699999999999999999999999999 777654 34679999999999999999998
No 362
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.03 E-value=8.7e-14 Score=98.84 Aligned_cols=78 Identities=19% Similarity=0.301 Sum_probs=67.6
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhhcCCeeE--------EEEeecC----CCCeEEEEeCCHHHHHHHHHhcCCceeccc
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 173 (276)
...+|||+|||..+++++|.++|.+||.|.. +.++.+. ..+||||+|.+.++|++|+..|++..+.|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g- 84 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG- 84 (116)
Confidence 4556999999999999999999999999998 7787763 35799999999999999999999999998
Q ss_pred ceeeEEeeecccCC
Q 023820 174 FSRAYVRVREYDHR 187 (276)
Q Consensus 174 ~~~~~i~~~~~~~~ 187 (276)
..+.|..+..+
T Consensus 85 ---~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 ---NPIKVSFATRR 95 (116)
Confidence 56666665543
No 363
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=4.9e-12 Score=83.28 Aligned_cols=74 Identities=16% Similarity=0.261 Sum_probs=62.9
Q ss_pred CCCCeEEEcCCC----CCCCH----HHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceE
Q 023820 4 RASRTLYVGNLP----GDIRE----REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRL 75 (276)
Q Consensus 4 ~~~~~l~v~nL~----~~~t~----~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i 75 (276)
.|.-||+|.-++ .++-+ .+|.+.|.+||+|..+++.. +.+||+|.+.++|.+|+. |||..+.|+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~-----d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE-----DKMWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS-----SSEEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec-----CCEEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 567788887766 23444 67899999999999999984 459999999999999999 99999999999
Q ss_pred EEEEccCC
Q 023820 76 RVELAHGG 83 (276)
Q Consensus 76 ~v~~a~~~ 83 (276)
+|+++.+.
T Consensus 79 kV~lkt~d 86 (91)
T 2dnr_A 79 TIALKSPS 86 (91)
T ss_dssp EEEECCCS
T ss_pred EEEeCCCC
Confidence 99998753
No 364
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.33 E-value=9.5e-12 Score=86.25 Aligned_cols=72 Identities=11% Similarity=0.167 Sum_probs=60.9
Q ss_pred CCCCCcEEEeCCCC-----CCCHHHHHHHhhhcCCeeEEEEeecC-----CCCeEEEEeCCHHHHHHHHHhcCCceeccc
Q 023820 104 SRRSEYLLVTGLPS-----SASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 104 ~~~~~~l~v~nl~~-----~~~~~~l~~~f~~~g~i~~~~~~~~~-----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 173 (276)
+.++.+|+|.|+.. +.++++|+++|.+||.|..+.++.++ ..|+|||+|.+.++|.+|+..|||..+.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34566799999963 23789999999999999999998863 357999999999999999999999999994
Q ss_pred ce
Q 023820 174 FS 175 (276)
Q Consensus 174 ~~ 175 (276)
..
T Consensus 85 ~i 86 (105)
T 2pe8_A 85 VV 86 (105)
T ss_dssp EC
T ss_pred EE
Confidence 33
No 365
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.31 E-value=3.4e-11 Score=93.07 Aligned_cols=71 Identities=15% Similarity=0.278 Sum_probs=61.1
Q ss_pred CcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC---CCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeec
Q 023820 108 EYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 183 (276)
Q Consensus 108 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~ 183 (276)
.+|||+|||..+++++|.++|.+||+|..|.+..+.. .|||||+|.+.++|.+|+..++ ..+.| ..+.|..
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~G----r~l~V~~ 183 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKE----TDLLILF 183 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETT----EECEEEE
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECC----EEEEEEE
Confidence 4599999999999999999999999999999988653 4699999999999999998665 58888 4455543
No 366
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.31 E-value=3.2e-12 Score=88.48 Aligned_cols=65 Identities=17% Similarity=0.323 Sum_probs=58.5
Q ss_pred CCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC---CCeEEEEeCCHHHHHHHHHhcCCceeccc
Q 023820 107 SEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 107 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 173 (276)
..+|||+|||..+++++|.++|.+||.|..+.++.+.. .+||||+|.+.++|++|+. ++..+.|.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~ 76 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGK 76 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCE
Confidence 34599999999999999999999999999999998863 3699999999999999999 77788773
No 367
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.27 E-value=1.6e-11 Score=86.40 Aligned_cols=72 Identities=13% Similarity=0.179 Sum_probs=61.2
Q ss_pred CcEEEeCC----CCCCCHHHHHHHhhhcCCeeEEEEeecCCC----CeEEEEeCC----HHH----HHHHHH--hcCCce
Q 023820 108 EYLLVTGL----PSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTN----YDD----MKHAIK--KLDDSE 169 (276)
Q Consensus 108 ~~l~v~nl----~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~----~~~----a~~a~~--~l~~~~ 169 (276)
..|+|+|| |+.+++.+|+++|..||+|..+.+..|+.. |||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 45999999 999999999999999999999999999865 599999996 433 889988 789999
Q ss_pred ecccceeeEEeeec
Q 023820 170 FRNAFSRAYVRVRE 183 (276)
Q Consensus 170 ~~g~~~~~~i~~~~ 183 (276)
+.| +.++|.-
T Consensus 83 I~G----r~irV~l 92 (136)
T 2j8a_A 83 IMG----FKFEVIL 92 (136)
T ss_dssp ETT----EEEEEEE
T ss_pred ecC----cEEEEEE
Confidence 999 5555553
No 368
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.26 E-value=1e-11 Score=98.31 Aligned_cols=76 Identities=13% Similarity=0.216 Sum_probs=65.5
Q ss_pred CCCCcEEEeCCCCCC---------CHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCcee-----
Q 023820 105 RRSEYLLVTGLPSSA---------SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF----- 170 (276)
Q Consensus 105 ~~~~~l~v~nl~~~~---------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~----- 170 (276)
....+|||+||+..+ ++++|.++|.+||+|..|.++.+ .+||||+|.+.++|+.|++.|+|..+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~--kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES--KNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC--CCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 345669999999998 79999999999999999999864 67999999999999999999999999
Q ss_pred -------cccceeeEEeeecccC
Q 023820 171 -------RNAFSRAYVRVREYDH 186 (276)
Q Consensus 171 -------~g~~~~~~i~~~~~~~ 186 (276)
.| ..+.|..+..
T Consensus 210 ~e~~~~~~g----r~L~V~wA~~ 228 (240)
T 3u1l_A 210 KEWDDRREG----TGLLVKWANE 228 (240)
T ss_dssp TTGGGGGGS----CCCEEEECC-
T ss_pred ccccccCCC----CEEEEEEccC
Confidence 55 5666666544
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.21 E-value=3.2e-11 Score=100.60 Aligned_cols=67 Identities=21% Similarity=0.208 Sum_probs=59.7
Q ss_pred CCCCCCcEEEeC--CCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceec
Q 023820 103 VSRRSEYLLVTG--LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 171 (276)
Q Consensus 103 ~~~~~~~l~v~n--l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~ 171 (276)
...++.+|||+| |+..+++++|.++|.+||+|..+.+.. .++||||+|.+.++|++|++.|||.++.
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 455677799999 578999999999999999999887754 5689999999999999999999999984
No 370
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.18 E-value=7.8e-11 Score=81.65 Aligned_cols=72 Identities=21% Similarity=0.253 Sum_probs=59.6
Q ss_pred CCCcEEEeCC--CCCCC--------HHHHHHHhhhcCCeeEEEEeecC------CCCeEEEEeCCHHHHHHHHHhcCCce
Q 023820 106 RSEYLLVTGL--PSSAS--------WQDLKDHMRRAGDVCFSQVFRDG------SGTTGIVDYTNYDDMKHAIKKLDDSE 169 (276)
Q Consensus 106 ~~~~l~v~nl--~~~~~--------~~~l~~~f~~~g~i~~~~~~~~~------~~~~~fv~f~~~~~a~~a~~~l~~~~ 169 (276)
++.+|.|.|+ |..+. +++|++.|++||+|..+.++.+. ..|+|||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4566889987 33332 37899999999999999998774 35899999999999999999999999
Q ss_pred ecccceee
Q 023820 170 FRNAFSRA 177 (276)
Q Consensus 170 ~~g~~~~~ 177 (276)
+.|+....
T Consensus 84 f~GR~i~v 91 (105)
T 3v4m_A 84 FANRVVVT 91 (105)
T ss_dssp ETTEECEE
T ss_pred eCCCEEEE
Confidence 99954433
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.18 E-value=1.4e-10 Score=81.36 Aligned_cols=74 Identities=12% Similarity=0.127 Sum_probs=61.3
Q ss_pred CCCCCcEEEeCCCCCC----------CHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceeccc
Q 023820 104 SRRSEYLLVTGLPSSA----------SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 104 ~~~~~~l~v~nl~~~~----------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 173 (276)
+.++.+|.+.|+-... -+++|.+.|.+||.|..+.+..+...|++||+|.+.++|.+|+..|||..++|+
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 4456678888873322 236889999999999999998887789999999999999999999999999995
Q ss_pred ceee
Q 023820 174 FSRA 177 (276)
Q Consensus 174 ~~~~ 177 (276)
....
T Consensus 84 ~i~v 87 (114)
T 3s6e_A 84 MITA 87 (114)
T ss_dssp ECEE
T ss_pred EEEE
Confidence 4433
No 372
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=7.1e-11 Score=78.08 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=60.9
Q ss_pred CCCCeEEEcCCCCC-----CCH----HHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCce
Q 023820 4 RASRTLYVGNLPGD-----IRE----REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (276)
Q Consensus 4 ~~~~~l~v~nL~~~-----~t~----~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~ 74 (276)
.|.-||+|.-+++. +-+ .+|.+.|.+||+|..+++..+ -+||+|.+.++|.+|+. |||..+.|+.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----~~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----QMLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----EEEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----cEEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 57789999877643 333 568899999999999999843 49999999999999999 9999999999
Q ss_pred EEEEEc
Q 023820 75 LRVELA 80 (276)
Q Consensus 75 i~v~~a 80 (276)
|+|.+.
T Consensus 87 L~V~~k 92 (95)
T 1ufw_A 87 VKISGP 92 (95)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 999864
No 373
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.12 E-value=2.3e-10 Score=80.79 Aligned_cols=72 Identities=13% Similarity=0.171 Sum_probs=60.0
Q ss_pred CCCcEEEeCCCC--CC---CHHHHHHHhhhcCCeeEEEEeecCC--------CCeEEEEeCCHHHHHHHHHhcCCceecc
Q 023820 106 RSEYLLVTGLPS--SA---SWQDLKDHMRRAGDVCFSQVFRDGS--------GTTGIVDYTNYDDMKHAIKKLDDSEFRN 172 (276)
Q Consensus 106 ~~~~l~v~nl~~--~~---~~~~l~~~f~~~g~i~~~~~~~~~~--------~~~~fv~f~~~~~a~~a~~~l~~~~~~g 172 (276)
++.+|+|.|+-. .+ -+++|.+.|.+||+|..|.++.+.. .|++||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 456689999832 22 3689999999999999999988753 2799999999999999999999999999
Q ss_pred cceee
Q 023820 173 AFSRA 177 (276)
Q Consensus 173 ~~~~~ 177 (276)
+....
T Consensus 99 R~i~v 103 (118)
T 3ue2_A 99 RKVVA 103 (118)
T ss_dssp EECEE
T ss_pred cEEEE
Confidence 55444
No 374
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.4e-09 Score=74.28 Aligned_cols=64 Identities=11% Similarity=0.123 Sum_probs=52.3
Q ss_pred CCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecccCC
Q 023820 117 SSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHR 187 (276)
Q Consensus 117 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~~~~ 187 (276)
..+++++|.++|.+||+|..|.++ ...+|||||+|.+.++|..|++.+++ +.| ..+.|......
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g----~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNEVG--LVD----NPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTCCB--CSS----SBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhcCC--CCC----CeEEEEEccCC
Confidence 567999999999999999999988 46778999999999999999998554 345 45666655443
No 375
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.06 E-value=6.8e-11 Score=81.82 Aligned_cols=63 Identities=21% Similarity=0.249 Sum_probs=52.4
Q ss_pred EeCCCCCCCHHHHHHHh------------hhcCCeeEEEEeecC---CCCeEEEEeCCHHHHHHHHHhcCCceecccc
Q 023820 112 VTGLPSSASWQDLKDHM------------RRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 174 (276)
Q Consensus 112 v~nl~~~~~~~~l~~~f------------~~~g~i~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 174 (276)
+.||+..+++++|.+.| .+||+|..+.++.+. ..|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 45566666776666555 999999999998875 3679999999999999999999999999943
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=1.8e-09 Score=75.85 Aligned_cols=65 Identities=17% Similarity=0.275 Sum_probs=57.9
Q ss_pred CCcEEEeCCCCC-CCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCC-HHHHHHHHHhcC--Cceeccc
Q 023820 107 SEYLLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTN-YDDMKHAIKKLD--DSEFRNA 173 (276)
Q Consensus 107 ~~~l~v~nl~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~-~~~a~~a~~~l~--~~~~~g~ 173 (276)
...|+|+||+.. ++.++|+++|.+||+|.+|.+..+.. .|||.|.+ ..+|..|+..++ +..|.|.
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 334999999999 99999999999999999999988866 79999999 899999999994 6677774
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.96 E-value=1.3e-09 Score=86.32 Aligned_cols=76 Identities=25% Similarity=0.313 Sum_probs=62.4
Q ss_pred CCeEEEcCCCC-----CCCHHHHHHHHhhcCCeeEEEEec-------CCCCCceEEEEecCHHHHHHHHHhcCCCccCCc
Q 023820 6 SRTLYVGNLPG-----DIREREVEDLFYKYGPIAHIDLKI-------PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (276)
Q Consensus 6 ~~~l~v~nL~~-----~~t~~~l~~~F~~~G~v~~v~~~~-------~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~ 73 (276)
+..+.+.|+-. .-.+++|.+.|++||.|..+.|.. ++.++|++||+|.+.++|++|+..|||..|+|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 34455555422 245678999999999999999953 226789999999999999999999999999999
Q ss_pred eEEEEEcc
Q 023820 74 RLRVELAH 81 (276)
Q Consensus 74 ~i~v~~a~ 81 (276)
.|.|.+..
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999874
No 378
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.82 E-value=3.2e-08 Score=66.69 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=64.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhc-----CCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEE
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKY-----GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~-----G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~ 78 (276)
.++|-|-|||..+++..|+.|++.+ |.|..|.+..+ -+-|+|+|.+...|.+|.-.|||..|.|+.|+|.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD---H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD---FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT---TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC---CCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 6899999999999999999999999 99999998743 4579999999999999988899999999999995
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=2.5e-08 Score=65.66 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=47.7
Q ss_pred HHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceeeEEeeecc
Q 023820 122 QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 184 (276)
Q Consensus 122 ~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~i~~~~~ 184 (276)
.+|.+.|.+||+|..+++..+ .+||+|.+.++|.+|+. |+|..+.| +.++|..+
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d----~~fVtF~d~~sAlaAi~-mnG~~v~G----r~LkV~lk 83 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVED----KMWVTFLEGSSALNVLS-LNGKELLN----RTITIALK 83 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSS----SEEEEESSHHHHHHGGG-GTTCEETT----EEEEEEEC
T ss_pred HHHHHHHHhCCCeEEEEEecC----CEEEEECChHHHHHHHh-cCCeEeCC----eEEEEEeC
Confidence 679999999999999999987 49999999999999998 99999999 55555544
No 380
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=1.5e-07 Score=63.02 Aligned_cols=89 Identities=24% Similarity=0.344 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhh-----cCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEE
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYK-----YGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~-----~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~ 78 (276)
-..++|.|.|||+.++++.|.-+|++ =|+|..|... .+-|+|+|.+.+.|+..|+ -....|.+.+|.|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~-----~~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL-----GCGGVLTFREPADAERVLA-QADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE-----TTEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc-----CCcEEEEEcChHHHHHHhc-CCcceecCeEEEEE
Confidence 35689999999999999999999997 2689998886 2689999999999999998 44678888999996
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEeCCCCCCC
Q 023820 79 LAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYLLVTGLPSSAS 120 (276)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 120 (276)
.. .+...+.|++.+|++.++
T Consensus 80 P~----------------------~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 80 PA----------------------PPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EC----------------------CCCCCCCCCCCSCCCCCC
T ss_pred cC----------------------CCCCcceEeeecCCCCCC
Confidence 63 344566788888887764
No 381
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.67 E-value=1.7e-07 Score=63.01 Aligned_cols=76 Identities=20% Similarity=0.228 Sum_probs=65.4
Q ss_pred CCCCeEEEcCCCCCC-CH----HHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEE
Q 023820 4 RASRTLYVGNLPGDI-RE----REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~-t~----~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~ 78 (276)
.-.++|+|+||+..+ .. +.++++|..|+++....+. ++-.-..|.|.++++|.+|-..||+..+.|+.|+|.
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l---kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF---KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE---TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec---CcceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 456899999998865 32 5678999999999988887 344578999999999999999999999999999999
Q ss_pred EccC
Q 023820 79 LAHG 82 (276)
Q Consensus 79 ~a~~ 82 (276)
+++.
T Consensus 80 Fgq~ 83 (104)
T 1wey_A 80 FAQT 83 (104)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9983
No 382
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=1.2e-07 Score=62.74 Aligned_cols=70 Identities=9% Similarity=0.167 Sum_probs=56.0
Q ss_pred CCCCcEEEeCCCCC-----CCH----HHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccce
Q 023820 105 RRSEYLLVTGLPSS-----ASW----QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 175 (276)
Q Consensus 105 ~~~~~l~v~nl~~~-----~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 175 (276)
++..+|+|.-++.. +.. .+|.+.|.+||+|..+++..+. +||+|.+.++|.+|+. |+|..+.|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~G--- 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKG--- 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETT---
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCC---
Confidence 34566777766532 222 5688999999999999999884 9999999999999999 99999999
Q ss_pred eeEEeeec
Q 023820 176 RAYVRVRE 183 (276)
Q Consensus 176 ~~~i~~~~ 183 (276)
+.++|..
T Consensus 85 -r~L~V~~ 91 (95)
T 1ufw_A 85 -RAVKISG 91 (95)
T ss_dssp -EEEEEEC
T ss_pred -eEEEEec
Confidence 5555543
No 383
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.29 E-value=1.7e-06 Score=68.11 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=51.0
Q ss_pred CCHHHHHHHhhhcCCeeEEEEeecCC--------CCeEEEEeCCHHHHHHHHHhcCCceecccceee
Q 023820 119 ASWQDLKDHMRRAGDVCFSQVFRDGS--------GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 177 (276)
Q Consensus 119 ~~~~~l~~~f~~~g~i~~~~~~~~~~--------~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 177 (276)
-.+++|.+.|.+||.|..+.+..+.. .|++||+|.+.++|.+|+..|+|..++|+....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~ 207 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVA 207 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEE
Confidence 35689999999999999999975532 369999999999999999999999999965544
No 384
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.16 E-value=1.4e-05 Score=52.89 Aligned_cols=76 Identities=17% Similarity=0.198 Sum_probs=59.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEec-----CCCCCceEEEEecCHHHHHHHHHhcCCCccCCc-----eEE
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-----PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-----RLR 76 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~-----~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~-----~i~ 76 (276)
++|.|++|||.+|++++.+.++.+..+....... ......-|||.|.+.+++....+.++|..|-+. +..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 5799999999999999999999988776555522 112335899999999999999999999887532 335
Q ss_pred EEEccC
Q 023820 77 VELAHG 82 (276)
Q Consensus 77 v~~a~~ 82 (276)
|++|..
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 666643
No 385
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.13 E-value=2.3e-05 Score=52.90 Aligned_cols=67 Identities=12% Similarity=0.113 Sum_probs=60.5
Q ss_pred CCcEEEeCCCCCCCHHHHHHHhhhc-----CCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccce
Q 023820 107 SEYLLVTGLPSSASWQDLKDHMRRA-----GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 175 (276)
Q Consensus 107 ~~~l~v~nl~~~~~~~~l~~~f~~~-----g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 175 (276)
..+|-+-|||..++...|..+..++ |++..+.+..+.. -|+|+|.+...|-+|.-+|+|.+|.|+..
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~--GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN--GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT--EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC--ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 4569999999999999999999999 9999999887754 59999999999999999999999998544
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.09 E-value=1e-05 Score=53.38 Aligned_cols=55 Identities=20% Similarity=0.344 Sum_probs=44.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcC
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~ln 66 (276)
.+.++| ++|+.+...||.++|+.||.|.--.|. -..|||.|.+++.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid-----DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE-----TTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc-----CCeEEEEecCHHHHHHHHHhcc
Confidence 356667 999999999999999999965433333 3489999999999999999763
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.98 E-value=3.4e-05 Score=53.37 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=57.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCC-ceEEEEEc
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG-HRLRVELA 80 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g-~~i~v~~a 80 (276)
.+-|.|-++|+.. ...|...|++||+|...... ....+..|.|.+..+|++||. .||..|.| -.|=|.+.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 5678899999985 77888999999999988762 345799999999999999999 89999985 55556553
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.93 E-value=1.2e-05 Score=53.28 Aligned_cols=54 Identities=22% Similarity=0.367 Sum_probs=43.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcC
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~ln 66 (276)
..++| ++|+.+...||.++|+.||.|. |.... -..|||.|.+++.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~-I~Wid----DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWID----DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEEE----TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE-EEEEc----CCeEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999999433 33332 3489999999999999999764
No 389
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.67 E-value=0.00012 Score=48.67 Aligned_cols=76 Identities=18% Similarity=0.238 Sum_probs=55.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCC------CCCceEEEEecCHHHHHHHHHhcCCCccCCc-----
Q 023820 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP------RPPGYAFVEFEEARDAEDAIRGRDGYDFDGH----- 73 (276)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~------~~~g~afV~f~~~e~a~~A~~~lng~~~~g~----- 73 (276)
.+-+|.|+.|||.+|++++.+.++.+-++..... ..| ..-.-|||.|.+.+++....+.++|..|-+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~f-v~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~ 86 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEF-FAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEY 86 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCC-CCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEE-eCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEe
Confidence 4678999999999999998877776544322211 122 2235789999999999999999999887532
Q ss_pred eEEEEEcc
Q 023820 74 RLRVELAH 81 (276)
Q Consensus 74 ~i~v~~a~ 81 (276)
+..|++|.
T Consensus 87 ~a~VE~AP 94 (97)
T 2l08_A 87 PAVVEFAP 94 (97)
T ss_dssp EEEEEECC
T ss_pred eeEEEecC
Confidence 45566664
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.51 E-value=0.00085 Score=44.33 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=43.6
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcC
Q 023820 110 LLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 166 (276)
Q Consensus 110 l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 166 (276)
|++-++|..+...||.++|..||.|.--.+.. ..|||.|.+++.|..|+..+.
T Consensus 18 Vf~l~FP~ewKt~DI~~lFs~fggv~I~WidD----TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHVTFPKEWKTSDLYQLFSAFGNIQISWIDD----TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEEECCTTCCHHHHHHHHTTTCSCCCEEEET----TEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEeCChhhhhHHHHHHhhccCCEEEEEEcC----CeEEEEecCHHHHHHHHHhcc
Confidence 44449999999999999999999665545442 289999999999999999763
No 391
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.41 E-value=0.0002 Score=50.27 Aligned_cols=75 Identities=20% Similarity=0.331 Sum_probs=54.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEec---------------CC-CCCceEEEEecCHHHHHHHHHhcC
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAH-IDLKI---------------PP-RPPGYAFVEFEEARDAEDAIRGRD 66 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~-v~~~~---------------~~-~~~g~afV~f~~~e~a~~A~~~ln 66 (276)
+...-|.|=++|+.. ...|.+.|++||.|.+ +.+.. .. ...++..|.|.+..+|.+||. .|
T Consensus 5 ~~e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N 82 (132)
T 3p3d_A 5 NGELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN 82 (132)
T ss_dssp ---CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT
T ss_pred cCceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC
Confidence 456778888996654 4567788999999976 21110 00 134688999999999999999 89
Q ss_pred CCccCCceEEEEEc
Q 023820 67 GYDFDGHRLRVELA 80 (276)
Q Consensus 67 g~~~~g~~i~v~~a 80 (276)
|..|.|..|=|.+.
T Consensus 83 G~ii~G~mIGV~Py 96 (132)
T 3p3d_A 83 GAVFNGVLLGVIPY 96 (132)
T ss_dssp TCEETTEECEEEEC
T ss_pred CeEeCcEEEEEEEC
Confidence 99999987777654
No 392
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.33 E-value=0.00087 Score=45.03 Aligned_cols=70 Identities=16% Similarity=0.093 Sum_probs=56.7
Q ss_pred CCCcEEEeCCCCCC-C----HHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceecccceee
Q 023820 106 RSEYLLVTGLPSSA-S----WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 177 (276)
Q Consensus 106 ~~~~l~v~nl~~~~-~----~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 177 (276)
..++|+|.||+..+ . ++.++++|..|+++......+.-. -..|.|.++++|.+|...||+..+.|...+.
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 45679999998766 2 367899999999998877766533 4789999999999999999999999954333
No 393
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.16 E-value=0.0043 Score=40.86 Aligned_cols=68 Identities=13% Similarity=0.343 Sum_probs=56.7
Q ss_pred cEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCC------CeEEEEeCCHHHHHHHHHhcCCceeccccee
Q 023820 109 YLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG------TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 176 (276)
Q Consensus 109 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~------~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~ 176 (276)
.|.|.+||+.++++++.+.+.....+........... .-|||.|.+.+++..-.+.++|..+-+....
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~ 76 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQ 76 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCC
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCC
Confidence 4889999999999999999999988777666555321 2699999999999999999999988775443
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.13 E-value=0.0025 Score=44.06 Aligned_cols=62 Identities=15% Similarity=0.247 Sum_probs=51.6
Q ss_pred CcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcCCceeccc
Q 023820 108 EYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 173 (276)
Q Consensus 108 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 173 (276)
..|.|-++|+.. ...|...|.+||.|..... .....+..|.|.+..+|++|+. .||..+.|.
T Consensus 25 ~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~ 86 (119)
T 1wwh_A 25 TWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFGES 86 (119)
T ss_dssp GEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEETTT
T ss_pred CEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCC
Confidence 349999999885 6778888999999998776 3345599999999999999999 699988763
No 395
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.09 E-value=0.00033 Score=60.48 Aligned_cols=56 Identities=25% Similarity=0.338 Sum_probs=42.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHh
Q 023820 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG 64 (276)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~ 64 (276)
.++|+|. .|..+++.+|.+.|++||+|..+.+..+. .-||.|||.+.++++.++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHHHHHhc
Confidence 4789996 89999999999999999999999886432 35999999999999988763
No 396
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.98 E-value=0.0075 Score=40.32 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=46.0
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHhhh-----cCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHh
Q 023820 106 RSEYLLVTGLPSSASWQDLKDHMRR-----AGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKK 164 (276)
Q Consensus 106 ~~~~l~v~nl~~~~~~~~l~~~f~~-----~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~ 164 (276)
...+|.|.|||+.+.++.|.-.|+. -|+|..+.... ..|+|+|.+.+.|+..+++
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC
Confidence 3456999999999999999999976 24677777755 4899999999999999885
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.92 E-value=0.0012 Score=43.80 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=42.7
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcC
Q 023820 110 LLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 166 (276)
Q Consensus 110 l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 166 (276)
|++-++|..+...||.++|..||.|.--.+. | ..|||.|.+++.|..|+..+.
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fggv~I~Wid-D---TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFGNIQISWID-D---TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSEEEEEEEEE-T---TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEEeCChhhhhHHHHHHHhccCCEEEEEEc-C---CeEEEEecCHHHHHHHHHhcc
Confidence 4444999999999999999999955444443 3 379999999999999999764
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.23 E-value=0.017 Score=38.24 Aligned_cols=71 Identities=15% Similarity=0.259 Sum_probs=53.3
Q ss_pred CCcEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCC------CCeEEEEeCCHHHHHHHHHhcCCceecccceee
Q 023820 107 SEYLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS------GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 177 (276)
Q Consensus 107 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~------~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 177 (276)
+-.|.|..||+.+|++++.+.+...-++.......... -.-|||.|.+.++...-.+.++|..+-+.....
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~ 85 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLE 85 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCE
Confidence 44599999999999999999888765543322222211 125999999999999999999999887765443
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.69 E-value=0.061 Score=37.67 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=47.3
Q ss_pred CcEEEeCCCCCCCHHHHHHHhhhcCCeeEE-EEee-------------c-C---CCCeEEEEeCCHHHHHHHHHhcCCce
Q 023820 108 EYLLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFR-------------D-G---SGTTGIVDYTNYDDMKHAIKKLDDSE 169 (276)
Q Consensus 108 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~-~~~~-------------~-~---~~~~~fv~f~~~~~a~~a~~~l~~~~ 169 (276)
..|.|-+.|+.... .+.+.|.+||.|..- .... . + ...+..|.|.+..+|.+|+. .||..
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 34889999766554 566789999998762 1110 0 1 23478999999999999999 89999
Q ss_pred eccc
Q 023820 170 FRNA 173 (276)
Q Consensus 170 ~~g~ 173 (276)
+.|.
T Consensus 86 i~G~ 89 (132)
T 3p3d_A 86 FNGV 89 (132)
T ss_dssp ETTE
T ss_pred eCcE
Confidence 9884
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.66 E-value=0.07 Score=46.96 Aligned_cols=55 Identities=22% Similarity=0.349 Sum_probs=44.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCC
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng 67 (276)
..++|+ +|+.+...+|.++|+.||.|. |... ....|||.|.+.+.|..++..++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v~-V~wi----ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNIQ-ISWI----DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCCE-EEEC----SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCEE-EEEE----cCCeEEEEECCHHHHHHHHHHHHh
Confidence 467776 999999999999999999653 4333 134799999999999999998853
No 401
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.14 E-value=0.031 Score=48.35 Aligned_cols=54 Identities=11% Similarity=0.207 Sum_probs=40.3
Q ss_pred cEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHh
Q 023820 109 YLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKK 164 (276)
Q Consensus 109 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~ 164 (276)
.|+|. .|..+++.+|.+.|.+||+|..+.+..+ .+.||.|+|.+.+++..++..
T Consensus 55 sv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 55 TVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-FGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp EEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-SSEEEEEECC---CCHHHHSS
T ss_pred eEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-CCeEEEEEeCCHHHHHHHHhc
Confidence 48887 6888999999999999999999988764 346999999999998877653
No 402
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=91.54 E-value=0.76 Score=28.74 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=44.9
Q ss_pred eEEEcCC-CCCCCHHHHHHHHhhcCC-----eeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCceEEEEEcc
Q 023820 8 TLYVGNL-PGDIREREVEDLFYKYGP-----IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (276)
Q Consensus 8 ~l~v~nL-~~~~t~~~l~~~F~~~G~-----v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~i~v~~a~ 81 (276)
+|+|..- -..+.+.+|..++..-+. |-.|.+. ..|.||+-.. +.|..++..|++..+.|+.+.|+.+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-----d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-----DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-----SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-----CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 5666322 334788888888876553 4556664 4589999887 66888899899999999999998753
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.09 E-value=1.5 Score=38.47 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=42.0
Q ss_pred cEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhcC
Q 023820 109 YLLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 166 (276)
Q Consensus 109 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 166 (276)
.++|+ +|..+...+|.+.|..||.+. |.-+.+ ..|||.|.+.+.|..++..+.
T Consensus 442 vl~v~-f~~~~~~~~i~~~fs~fg~v~-V~widd---t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 442 VLHVT-FPKEWKTSDLYQLFSAFGNIQ-ISWIDD---TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp EEEEE-CCTTCCHHHHHHHGGGGCCCE-EEECSS---SEEEEECSCHHHHHHHHHHHT
T ss_pred EEEEe-CCCCCCHHHHHHHHHhcCCEE-EEEEcC---CeEEEEECCHHHHHHHHHHHH
Confidence 36665 899999999999999999543 322222 379999999999999999875
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=84.76 E-value=5.9 Score=25.39 Aligned_cols=57 Identities=19% Similarity=0.192 Sum_probs=48.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~l 65 (276)
+.+|-|.|-|+|..+-..++.-.....|---.|... -|.|.|.|.+.+.-..|+..|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-----dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-----DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-----SSCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-----cCeeEEEecCChHHHHHHHHH
Confidence 467888899999999999988888888876677766 678999999999888888765
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=74.88 E-value=5.5 Score=29.22 Aligned_cols=48 Identities=23% Similarity=0.235 Sum_probs=35.1
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHH--hhcCCeeEEEEecCCCCCceEEEEecCH
Q 023820 8 TLYVGNLPG-D--------IREREVEDLF--YKYGPIAHIDLKIPPRPPGYAFVEFEEA 55 (276)
Q Consensus 8 ~l~v~nL~~-~--------~t~~~l~~~F--~~~G~v~~v~~~~~~~~~g~afV~f~~~ 55 (276)
++.|-|+|. . ....+|.+.| ..|.++.-..+.....+.|+|.|+|.+-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCC
Confidence 355668887 2 4557899977 8999887665554555678999999863
No 406
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=55.82 E-value=37 Score=21.68 Aligned_cols=56 Identities=16% Similarity=0.342 Sum_probs=45.2
Q ss_pred CCCc-EEEeCCCCCCCHHHHHHHhhhcCCeeEEEEeecCCCCeEEEEeCCHHHHHHHHHhc
Q 023820 106 RSEY-LLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 165 (276)
Q Consensus 106 ~~~~-l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l 165 (276)
..+| +.+-|+|..+-..++.-...-.|---+|.... |.|.+.|.+.++..-|+.+|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid----gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID----GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS----SCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec----CeeEEEecCChHHHHHHHHH
Confidence 3445 77889999999998888877777666666654 37999999999999999885
No 407
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=53.92 E-value=41 Score=21.61 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=25.4
Q ss_pred eeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCC
Q 023820 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (276)
Q Consensus 33 v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng 67 (276)
|..+.++. .-+||.||++...++...++..+.|
T Consensus 40 i~~v~vP~--~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASE--SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECT--TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEec--ccCCEEEEEEecchhHHHHHHCCCC
Confidence 55555542 3689999999999998888887765
No 408
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.74 E-value=7.1 Score=23.44 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=13.2
Q ss_pred CCeeEEEEecCCCCCceEEEEecCH
Q 023820 31 GPIAHIDLKIPPRPPGYAFVEFEEA 55 (276)
Q Consensus 31 G~v~~v~~~~~~~~~g~afV~f~~~ 55 (276)
|.|+.|.. .++.|||.|++.
T Consensus 28 GtV~kV~~-----~~~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVDS-----AREVCLVQFEDD 47 (68)
T ss_dssp EEEEEEET-----TTTEEEEEETTT
T ss_pred eEEEEEec-----CCcEEEEEEccC
Confidence 45554442 367899999873
No 409
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=45.57 E-value=3.1 Score=29.87 Aligned_cols=28 Identities=14% Similarity=0.325 Sum_probs=17.7
Q ss_pred HHHHHHHhhcCCeeEEEEecCCCCCceEEEEec
Q 023820 21 REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFE 53 (276)
Q Consensus 21 ~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~ 53 (276)
+++.++|...|.|+-+.. .+||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET-----TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC-----CCCeeEEeeC
Confidence 455667777777765543 3899999986
No 410
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=45.28 E-value=9.5 Score=23.59 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=9.5
Q ss_pred CCceEEEEecCH
Q 023820 44 PPGYAFVEFEEA 55 (276)
Q Consensus 44 ~~g~afV~f~~~ 55 (276)
..+.|||.|.+.
T Consensus 53 ~~e~ClV~F~D~ 64 (79)
T 2m0o_A 53 AREVCLVQFEDD 64 (79)
T ss_dssp TTTEEEEEETTS
T ss_pred CCCEEEEEEcCC
Confidence 367899999874
No 411
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=42.06 E-value=12 Score=22.57 Aligned_cols=11 Identities=27% Similarity=0.467 Sum_probs=9.4
Q ss_pred CCceEEEEecC
Q 023820 44 PPGYAFVEFEE 54 (276)
Q Consensus 44 ~~g~afV~f~~ 54 (276)
..+.|+|.|.+
T Consensus 40 ~~gtC~V~F~D 50 (66)
T 2eqj_A 40 LKQSCFIIFED 50 (66)
T ss_dssp TTTEEEEEETT
T ss_pred CCcEEEEEEcc
Confidence 47899999987
No 412
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.44 E-value=5.7 Score=23.46 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=9.6
Q ss_pred CCceEEEEecCH
Q 023820 44 PPGYAFVEFEEA 55 (276)
Q Consensus 44 ~~g~afV~f~~~ 55 (276)
.+..|||.|++.
T Consensus 34 ~~~~ClV~FeD~ 45 (63)
T 2e5q_A 34 SKQSCLVTFEDN 45 (63)
T ss_dssp TTSEEEEEETTS
T ss_pred CCCEEEEEEccC
Confidence 467899999873
No 413
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=34.88 E-value=36 Score=26.98 Aligned_cols=29 Identities=34% Similarity=0.453 Sum_probs=23.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEE
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHI 36 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v 36 (276)
.-+.|+|||++++..-|..++.. +.+..+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~ 139 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARL 139 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEE
Confidence 45789999999999999999987 555433
No 414
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=34.39 E-value=60 Score=27.65 Aligned_cols=60 Identities=27% Similarity=0.333 Sum_probs=41.5
Q ss_pred eEEEcCCCCCC----CHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCce
Q 023820 8 TLYVGNLPGDI----REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (276)
Q Consensus 8 ~l~v~nL~~~~----t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~~ 74 (276)
--+||||..-. ....+.++..+||+|..+.+- +.-+|...+++.|+.++. -++..+.+++
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~~k~il~-~~~~~f~~rp 79 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG------TKTTVIVGHHQLAKEVLI-KKGKDFSGRP 79 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET------TEEEEEECSHHHHHHHHT-TTTTTTBBCC
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC------CCCEEEECCHHHHHHHHH-hCcHhhCCCC
Confidence 34678876432 135677888899999888763 245778889999999987 3555555544
No 415
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=34.35 E-value=71 Score=18.71 Aligned_cols=55 Identities=9% Similarity=-0.004 Sum_probs=41.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhc
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~l 65 (276)
.++.|.++.-.-=...|.+.+.. ..|..+.+.. ..+.+.|+|.+.+....++..+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~---~~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDL---NEAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECS---SEEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEc---cCCEEEEEECCHHHHHHHHHHc
Confidence 56788888877777889999988 7788888752 2457788888666667777744
No 416
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=32.82 E-value=72 Score=23.62 Aligned_cols=45 Identities=9% Similarity=-0.046 Sum_probs=32.0
Q ss_pred EcCCCCCCCHHH--------HHHHHhhcCCeeEEEEecCCCCCceEEEEecCH
Q 023820 11 VGNLPGDIRERE--------VEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA 55 (276)
Q Consensus 11 v~nL~~~~t~~~--------l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~ 55 (276)
+=-||..++.++ +.++|..+|-|.++.|+.++.....|-|-|.+.
T Consensus 75 ~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~~~NpHaHim~t~R 127 (185)
T 2ns6_A 75 EFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGGENPHCHLMISER 127 (185)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEETTTEEEEEEEECCB
T ss_pred EEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCCCCCceEEEEEeec
Confidence 337999999877 444566678888888876554555777777764
No 417
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=32.73 E-value=21 Score=20.83 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=8.9
Q ss_pred CceEEEEecCH
Q 023820 45 PGYAFVEFEEA 55 (276)
Q Consensus 45 ~g~afV~f~~~ 55 (276)
...|+|.|.+.
T Consensus 31 ~~~clV~F~D~ 41 (58)
T 4hcz_A 31 REVCLVQFEDD 41 (58)
T ss_dssp TTEEEEEETTS
T ss_pred CCEEEEEEcCC
Confidence 56899999874
No 418
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=28.58 E-value=41 Score=28.42 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=35.7
Q ss_pred EEcCCCCC---CCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCCccCCc
Q 023820 10 YVGNLPGD---IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (276)
Q Consensus 10 ~v~nL~~~---~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~~~~g~ 73 (276)
+||||..- -....+.++..+||+|..+.+- +.-+|...+++.++.++. -++..+.++
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~i~~vl~-~~~~~f~~r 79 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA------WTPVVVLNGLAAVREALV-THGEDTADR 79 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET------TEEEEEEEHHHHHHHHHT-TTGGGSCBC
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC------CeeEEEECCHHHHHHHHH-hCChhhcCC
Confidence 45665422 2234577888999999888763 233566778888888876 344444433
No 419
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=28.29 E-value=77 Score=21.04 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=26.7
Q ss_pred CeeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCC
Q 023820 32 PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68 (276)
Q Consensus 32 ~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~ 68 (276)
.|..+... ...+||.|||=.++.++..|+..+.+.
T Consensus 40 ~I~Si~~~--~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAP--EHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEEC--TTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEec--CCCceEEEEEeCCHHHHHHHHhcccce
Confidence 35555443 346999999999999999999977554
No 420
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=27.79 E-value=22 Score=28.30 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=24.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEE
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHID 37 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~ 37 (276)
..+.|+|||++++..-|..++.....+..+.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~ 145 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQH 145 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEE
Confidence 4578999999999999999998654454443
No 421
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=27.39 E-value=35 Score=15.53 Aligned_cols=12 Identities=42% Similarity=0.822 Sum_probs=9.6
Q ss_pred HHHHHHHHhhcC
Q 023820 20 EREVEDLFYKYG 31 (276)
Q Consensus 20 ~~~l~~~F~~~G 31 (276)
..+++++|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 467888998887
No 422
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.01 E-value=1.2e+02 Score=19.18 Aligned_cols=55 Identities=11% Similarity=0.170 Sum_probs=37.5
Q ss_pred EcCCCCCCCHHHHHHHHhhc-C-CeeEEEEecCCCCCceEEEEecCHHHHHHHHHhc
Q 023820 11 VGNLPGDIREREVEDLFYKY-G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (276)
Q Consensus 11 v~nL~~~~t~~~l~~~F~~~-G-~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~l 65 (276)
+-...+.++..+|++.++.+ | .|..|.-...+....-|||.+..-.+|......+
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHHS
T ss_pred EEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 33567899999999999864 3 3444444433344557999999888877665533
No 423
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=26.16 E-value=62 Score=21.23 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=18.2
Q ss_pred CCHHHHHHHHhhcCCeeEEEEe
Q 023820 18 IREREVEDLFYKYGPIAHIDLK 39 (276)
Q Consensus 18 ~t~~~l~~~F~~~G~v~~v~~~ 39 (276)
.+++.|.++|+.+|.|..-.+.
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MF 25 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMF 25 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEET
T ss_pred hHHHHHHHHHhccCCceEeecc
Confidence 4577799999999999887774
No 424
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=24.09 E-value=59 Score=20.41 Aligned_cols=20 Identities=15% Similarity=0.484 Sum_probs=17.8
Q ss_pred cCCCCCCCHHHHHHHHhhcC
Q 023820 12 GNLPGDIREREVEDLFYKYG 31 (276)
Q Consensus 12 ~nL~~~~t~~~l~~~F~~~G 31 (276)
|.|+..+++++|.++++...
T Consensus 50 Gqi~~ki~e~~L~~lL~~i~ 69 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRVA 69 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHc
Confidence 67899999999999999864
No 425
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=23.65 E-value=1.1e+02 Score=17.35 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=38.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecCCCCCceEEEEecC---HHHHHHHHHh
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEE---ARDAEDAIRG 64 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~---~e~a~~A~~~ 64 (276)
.++.|.|+.-.--...|.+.+.....|..+.+.. ..+-+.|.|.. .+....++..
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~---~~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNF---ALEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEET---TTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEe---cCCEEEEEECCCCCHHHHHHHHHH
Confidence 4577788877666778889999887788888863 34577888843 4445555553
No 426
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=23.58 E-value=70 Score=20.29 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=23.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc
Q 023820 4 RASRTLYVGNLPGDIREREVEDLFYKY 30 (276)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~ 30 (276)
+....|.|.+.+.+++.++..+|+..|
T Consensus 17 NtPvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 17 NTPVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp CCCCEEEESSCCEECCHHHHHHHHHHH
T ss_pred CCCeEEEeecCCccCCHHHHHHHHHHH
Confidence 456788999999999999999999887
No 427
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=23.46 E-value=99 Score=20.13 Aligned_cols=50 Identities=12% Similarity=0.256 Sum_probs=29.4
Q ss_pred CCCCCCHHHHHHHHhhc--------CCeeEEEE--------ecCCCCCc-eEEEEecCHHHHHHHHH
Q 023820 14 LPGDIREREVEDLFYKY--------GPIAHIDL--------KIPPRPPG-YAFVEFEEARDAEDAIR 63 (276)
Q Consensus 14 L~~~~t~~~l~~~F~~~--------G~v~~v~~--------~~~~~~~g-~afV~f~~~e~a~~A~~ 63 (276)
|.|.++++++..+...| |.|..+.- .......| |.++.|.-...+.+-++
T Consensus 10 l~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~ele 76 (101)
T 1cqm_A 10 LNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLA 76 (101)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeChHHHHHHH
Confidence 46778888877666655 44555443 11233344 77788876665555544
No 428
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=23.10 E-value=55 Score=25.50 Aligned_cols=23 Identities=30% Similarity=0.275 Sum_probs=19.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhc
Q 023820 8 TLYVGNLPGDIREREVEDLFYKY 30 (276)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~ 30 (276)
.+.|+|||++++...|.+++...
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~ 114 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYT 114 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTG
T ss_pred eEEEECCCCCccHHHHHHHHhcC
Confidence 57899999999999998888754
No 429
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=22.24 E-value=50 Score=25.62 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=22.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCee
Q 023820 7 RTLYVGNLPGDIREREVEDLFYKYGPIA 34 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~ 34 (276)
..+.|+|||++++..-|..++.....+.
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~ 123 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVP 123 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCS
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCc
Confidence 3478999999999999999998653333
No 430
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=22.13 E-value=61 Score=21.08 Aligned_cols=22 Identities=18% Similarity=0.043 Sum_probs=15.9
Q ss_pred EcCCCCCCCHHHHHHHH-hhcCC
Q 023820 11 VGNLPGDIREREVEDLF-YKYGP 32 (276)
Q Consensus 11 v~nL~~~~t~~~l~~~F-~~~G~ 32 (276)
|.+|.+.+|-+||...+ +..|.
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~ 43 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGR 43 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSC
T ss_pred EECCCCCCcHHHHHHHHHhccCC
Confidence 45788899999988854 44454
No 431
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=22.11 E-value=1.5e+02 Score=19.42 Aligned_cols=72 Identities=18% Similarity=0.241 Sum_probs=40.1
Q ss_pred CeEEEcCCCCCCCHHH--HHHHHhh--------cC---C--eeEEEEec---CC--CCCceEEEEecCHHH---HHHHHH
Q 023820 7 RTLYVGNLPGDIRERE--VEDLFYK--------YG---P--IAHIDLKI---PP--RPPGYAFVEFEEARD---AEDAIR 63 (276)
Q Consensus 7 ~~l~v~nL~~~~t~~~--l~~~F~~--------~G---~--v~~v~~~~---~~--~~~g~afV~f~~~e~---a~~A~~ 63 (276)
+.|.|-+||..-.+.. +..+|.. .+ . |..+.-.. +. .......|.|....+ ...|..
T Consensus 4 ~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaar 83 (100)
T 2w7a_A 4 GNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAR 83 (100)
T ss_dssp TEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHHH
T ss_pred cceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHHH
Confidence 6788999999743222 3444332 22 2 23332211 11 133467777776554 445555
Q ss_pred hcCCCccCCceEEEE
Q 023820 64 GRDGYDFDGHRLRVE 78 (276)
Q Consensus 64 ~lng~~~~g~~i~v~ 78 (276)
......+.|.+|.+.
T Consensus 84 ~k~~vtykg~pirls 98 (100)
T 2w7a_A 84 EKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHCCEEETTEEEEEE
T ss_pred HhCceeeCCcceeec
Confidence 455678899999875
No 432
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=21.74 E-value=81 Score=22.29 Aligned_cols=34 Identities=35% Similarity=0.374 Sum_probs=26.3
Q ss_pred eeEEEEecCCCCCceEEEEecCHHHHHHHHHhcCCC
Q 023820 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68 (276)
Q Consensus 33 v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~~lng~ 68 (276)
|..+.++. .-+||.||++...++...++..+.|.
T Consensus 33 i~~v~vp~--~fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPS--RVKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECT--TCCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeec--CCCcEEEEEEEchHHHHHHHhCCCCE
Confidence 55565542 35899999999999998999877764
No 433
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=21.53 E-value=65 Score=29.18 Aligned_cols=54 Identities=19% Similarity=0.272 Sum_probs=39.7
Q ss_pred cCCCCCCCHHHHHHHHh----hcCCeeEEEEecC--CCCCceEEEEecCHHHHHHHHHhc
Q 023820 12 GNLPGDIREREVEDLFY----KYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGR 65 (276)
Q Consensus 12 ~nL~~~~t~~~l~~~F~----~~G~v~~v~~~~~--~~~~g~afV~f~~~e~a~~A~~~l 65 (276)
+..+.+.+--+|..+|- .+|-|..+.|... +....++++.|.+.++|..|+..+
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 34555666668888883 6788998888442 334457889999999999988765
No 434
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=21.53 E-value=46 Score=20.09 Aligned_cols=12 Identities=8% Similarity=0.401 Sum_probs=9.5
Q ss_pred CCceEEEEecCH
Q 023820 44 PPGYAFVEFEEA 55 (276)
Q Consensus 44 ~~g~afV~f~~~ 55 (276)
.+..|||.|.+.
T Consensus 40 ~~~~ClV~FeD~ 51 (69)
T 2xk0_A 40 TSDQYLIRFDDQ 51 (69)
T ss_dssp CSSCEEEEETTC
T ss_pred CCceEEEEecCC
Confidence 367899999874
No 435
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=21.36 E-value=1.6e+02 Score=18.56 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=35.6
Q ss_pred EcCCCCCCCHHHHHHHHhh-cC-CeeEEEEecCCCCCceEEEEecCHHHHHHHHH
Q 023820 11 VGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (276)
Q Consensus 11 v~nL~~~~t~~~l~~~F~~-~G-~v~~v~~~~~~~~~g~afV~f~~~e~a~~A~~ 63 (276)
+=..++.++..+|++.++. || .|..|.-........-|||.+..-.+|.....
T Consensus 26 ~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHT
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHHH
Confidence 3356889999999999985 44 34444444333344579999988777665544
No 436
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=21.27 E-value=26 Score=27.47 Aligned_cols=29 Identities=31% Similarity=0.341 Sum_probs=22.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEE
Q 023820 8 TLYVGNLPGDIREREVEDLFYKYGPIAHI 36 (276)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~G~v~~v 36 (276)
-..|+|||++++..-|..++...+.+..+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~ 126 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDM 126 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheE
Confidence 34789999999999999999866555443
No 437
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=21.08 E-value=65 Score=26.63 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=19.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh
Q 023820 8 TLYVGNLPGDIREREVEDLFYK 29 (276)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~ 29 (276)
...|+|||++++..-|.+++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999999998875
Done!