BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023822
(276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 120/257 (46%), Gaps = 11/257 (4%)
Query: 17 SEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK 76
SE + + + + + +SS+ F + +L ++S D+ I+++ KTI+ K
Sbjct: 9 SEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
Query: 77 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 136
G+ V ++S ++ +S D++L++ + K L+ KGH + V + +
Sbjct: 69 LGISDVAWSSDSNLLVSASD---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 137 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYE 193
+SGS D +V +WD + KC L P +A D L+ + ++ G R++D
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---A 182
Query: 194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 253
G + D + VKFS +G+ +L T++ + + D +G L TY +
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKY 241
Query: 254 TLEASFS-PEGMFVISG 269
+ A+FS G +++SG
Sbjct: 242 CIFANFSVTGGKWIVSG 258
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 251
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 252 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 309
Query: 147 L 147
L
Sbjct: 310 L 310
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 120/257 (46%), Gaps = 11/257 (4%)
Query: 17 SEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK 76
SE + + + + + +SS+ F + +L ++S D+ I+++ KTI+ K
Sbjct: 9 SEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
Query: 77 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 136
G+ V ++S ++ +S D++L++ + K L+ KGH + V + +
Sbjct: 69 LGISDVAWSSDSNLLVSASD---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 137 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYE 193
+SGS D +V +WD + KC L P +A D L+ + ++ G R++D
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---A 182
Query: 194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 253
G + D + VKFS +G+ +L T++ + + D +G L TY +
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKY 241
Query: 254 TLEASFS-PEGMFVISG 269
+ A+FS G +++SG
Sbjct: 242 CIFANFSVTGGKWIVSG 258
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 251
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 252 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 309
Query: 147 L 147
L
Sbjct: 310 L 310
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 119/257 (46%), Gaps = 11/257 (4%)
Query: 17 SEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK 76
SE + + + + + +SS+ F + +L +S D+ I+++ KTI+ K
Sbjct: 9 SEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHK 68
Query: 77 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 136
G+ V ++S ++ +S D++L++ + K L+ KGH + V + +
Sbjct: 69 LGISDVAWSSDSNLLVSASD---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 137 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYE 193
+SGS D +V +WD + KC L P +A D L+ + ++ G R++D
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---A 182
Query: 194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 253
G + D + VKFS +G+ +L T++ + + D +G L TY +
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKY 241
Query: 254 TLEASFS-PEGMFVISG 269
+ A+FS G +++SG
Sbjct: 242 CIFANFSVTGGKWIVSG 258
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 251
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 252 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 309
Query: 147 LW 148
LW
Sbjct: 310 LW 311
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 101/211 (47%), Gaps = 9/211 (4%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
+SS+ F + +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S
Sbjct: 50 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 109
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D++L++ + K L+ KGH + V + + +SGS D +V +WD + KC
Sbjct: 110 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 166
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
L P +A D L+ + ++ G R++D G + D + VK
Sbjct: 167 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 223
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 244
FS +G+ +L T++ + + D +G L TY
Sbjct: 224 FSPNGKYILAATLDNTLKLWDYSKGKCLKTY 254
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++ + +F+ S+ +V+ S DES+R++DV CLKT+ + V V F
Sbjct: 126 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 185
Query: 89 TTVIYSSKNG----WD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
+ ++ SS +G WD + L+ L DN + + K + ++ +
Sbjct: 186 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK----------FSPNGKYILAAT 235
Query: 141 LDRTVLLWDQRAEKC 155
LD T+ LWD KC
Sbjct: 236 LDNTLKLWDYSKGKC 250
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 214 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 272
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 273 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 330
Query: 147 LW 148
LW
Sbjct: 331 LW 332
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 101/211 (47%), Gaps = 9/211 (4%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
+SS+ F + +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 107
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D++L++ + K L+ KGH + V + + +SGS D +V +WD + KC
Sbjct: 108 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 164
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
L P +A D L+ + ++ G R++D G + D + VK
Sbjct: 165 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 221
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 244
FS +G+ +L T++ + + D +G L TY
Sbjct: 222 FSPNGKYILAATLDNTLKLWDYSKGKCLKTY 252
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++ + +F+ S+ +V+ S DES+R++DV CLKT+ + V V F
Sbjct: 124 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 183
Query: 89 TTVIYSSKNG----WD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
+ ++ SS +G WD + L+ L DN + + K + ++ +
Sbjct: 184 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK----------FSPNGKYILAAT 233
Query: 141 LDRTVLLWDQRAEKC 155
LD T+ LWD KC
Sbjct: 234 LDNTLKLWDYSKGKC 248
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 212 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 270
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 271 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 328
Query: 147 LW 148
LW
Sbjct: 329 LW 330
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 113/237 (47%), Gaps = 11/237 (4%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
+SS+ F + +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S
Sbjct: 43 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 102
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D++L++ + K L+ KGH + V + + +SGS D +V +WD + KC
Sbjct: 103 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 159
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
L P +A D L+ + ++ G R++D G + D + VK
Sbjct: 160 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 216
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS-PEGMFVISG 269
FS +G+ +L T++ + + D +G L TY + + A+FS G +++SG
Sbjct: 217 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSG 272
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++ + +F+ S+ +V+ S DES+R++DV CLKT+ + V V F
Sbjct: 119 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 178
Query: 89 TTVIYSSKNG----WD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
+ ++ SS +G WD + L+ L DN + + K + ++ +
Sbjct: 179 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK----------FSPNGKYILAAT 228
Query: 141 LDRTVLLWDQRAEKC 155
LD T+ LWD KC
Sbjct: 229 LDNTLKLWDYSKGKC 243
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 207 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 265
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 266 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 323
Query: 147 LW 148
LW
Sbjct: 324 LW 325
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 101/211 (47%), Gaps = 9/211 (4%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
+SS+ F + +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D++L++ + K L+ KGH + V + + +SGS D +V +WD + KC
Sbjct: 92 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
L P +A D L+ + ++ G R++D G + D + VK
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 205
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 244
FS +G+ +L T++ + + D +G L TY
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++ + +F+ S+ +V+ S DES+R++DV CLKT+ + V V F
Sbjct: 108 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 167
Query: 89 TTVIYSSKNG----WD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
+ ++ SS +G WD + L+ L DN + + K + ++ +
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK----------FSPNGKYILAAT 217
Query: 141 LDRTVLLWDQRAEKC 155
LD T+ LWD KC
Sbjct: 218 LDNTLKLWDYSKGKC 232
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 254
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 255 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 312
Query: 147 LW 148
LW
Sbjct: 313 LW 314
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 101/211 (47%), Gaps = 9/211 (4%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
+SS+ F + +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D++L++ + K L+ KGH + V + + +SGS D +V +WD + KC
Sbjct: 92 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
L P +A D L+ + ++ G R++D G + D + VK
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 205
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 244
FS +G+ +L T++ + + D +G L TY
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++ + +F+ S+ +V+ S DES+R++DV CLKT+ + V V F
Sbjct: 108 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 167
Query: 89 TTVIYSSKNG----WD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
+ ++ SS +G WD + L+ L DN + + K + ++ +
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK----------FSPNGKYILAAT 217
Query: 141 LDRTVLLWDQRAEKC 155
LD T+ LWD KC
Sbjct: 218 LDNTLKLWDYSKGKC 232
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 254
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 255 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 312
Query: 147 LW 148
LW
Sbjct: 313 LW 314
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 113/237 (47%), Gaps = 11/237 (4%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
+SS+ F + +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D++L++ + K L+ KGH + V + + +SGS D +V +WD + KC
Sbjct: 92 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
L P +A D L+ + ++ G R++D G + D + VK
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 205
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS-PEGMFVISG 269
FS +G+ +L T++ + + D +G L TY + + A+FS G +++SG
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSG 261
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++ + +F+ S+ +V+ S DES+R++DV CLKT+ + V V F
Sbjct: 108 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 167
Query: 89 TTVIYSSKNG----WD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
+ ++ SS +G WD + L+ L DN + + K + ++ +
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK----------FSPNGKYILAAT 217
Query: 141 LDRTVLLWDQRAEKC 155
LD T+ LWD KC
Sbjct: 218 LDNTLKLWDYSKGKC 232
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 254
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 255 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 312
Query: 147 LW 148
LW
Sbjct: 313 LW 314
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 113/237 (47%), Gaps = 11/237 (4%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
+SS+ F + +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 85
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D++L++ + K L+ KGH + V + + +SGS D +V +WD + KC
Sbjct: 86 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 142
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
L P +A D L+ + ++ G R++D G + D + VK
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 199
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS-PEGMFVISG 269
FS +G+ +L T++ + + D +G L TY + + A+FS G +++SG
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSG 255
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++ + +F+ S+ +V+ S DES+R++DV CLKT+ + V V F
Sbjct: 102 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 161
Query: 89 TTVIYSSKNG----WD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
+ ++ SS +G WD + L+ L DN + + K + ++ +
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK----------FSPNGKYILAAT 211
Query: 141 LDRTVLLWDQRAEKC 155
LD T+ LWD KC
Sbjct: 212 LDNTLKLWDYSKGKC 226
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 248
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 249 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 306
Query: 147 LW 148
LW
Sbjct: 307 LW 308
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 113/237 (47%), Gaps = 11/237 (4%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
+SS+ F + +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S
Sbjct: 22 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 81
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D++L++ + K L+ KGH + V + + +SGS D +V +WD + KC
Sbjct: 82 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 138
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
L P +A D L+ + ++ G R++D G + D + VK
Sbjct: 139 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 195
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS-PEGMFVISG 269
FS +G+ +L T++ + + D +G L TY + + A+FS G +++SG
Sbjct: 196 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSG 251
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++ + +F+ S+ +V+ S DES+R++DV CLKT+ + V V F
Sbjct: 98 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 157
Query: 89 TTVIYSSKNG----WD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
+ ++ SS +G WD + L+ L DN + + K + ++ +
Sbjct: 158 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK----------FSPNGKYILAAT 207
Query: 141 LDRTVLLWDQRAEKC 155
LD T+ LWD KC
Sbjct: 208 LDNTLKLWDYSKGKC 222
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 186 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 244
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 245 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 302
Query: 147 LW 148
LW
Sbjct: 303 LW 304
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 119/257 (46%), Gaps = 11/257 (4%)
Query: 17 SEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK 76
S + + + + + +SS+ F + +L ++S D+ I+++ KTI+ K
Sbjct: 5 STPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 64
Query: 77 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 136
G+ V ++S ++ +S D++L++ + K L+ KGH + V + +
Sbjct: 65 LGISDVAWSSDSNLLVSASD---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 121
Query: 137 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYE 193
+SGS D +V +WD + KC L P +A D L+ + ++ G R++D
Sbjct: 122 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---A 178
Query: 194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 253
G + D + VKFS +G+ +L T++ + + D +G L TY +
Sbjct: 179 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKY 237
Query: 254 TLEASFS-PEGMFVISG 269
+ A+FS G +++SG
Sbjct: 238 CIFANFSVTGGKWIVSG 254
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 189 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 247
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 248 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 305
Query: 147 LW 148
LW
Sbjct: 306 LW 307
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 113/237 (47%), Gaps = 11/237 (4%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
+SS+ F + +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 85
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D++L++ + K L+ KGH + V + + +SGS D +V +WD + KC
Sbjct: 86 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 142
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
L P +A D L+ + ++ G R++D G + D + VK
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 199
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS-PEGMFVISG 269
FS +G+ +L T++ + + D +G L TY + + A+FS G +++SG
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSG 255
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++ + +F+ S+ +V+ S DES+R++DV CLKT+ + V V F
Sbjct: 102 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 161
Query: 89 TTVIYSSKNG----WD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
+ ++ SS +G WD + L+ L DN + + K + ++ +
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK----------FSPNGKYILAAT 211
Query: 141 LDRTVLLWDQRAEKC 155
LD T+ LWD KC
Sbjct: 212 LDNTLKLWDYSKGKC 226
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 248
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 249 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 306
Query: 147 LW 148
LW
Sbjct: 307 LW 308
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 113/237 (47%), Gaps = 11/237 (4%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
+SS+ F + +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S
Sbjct: 27 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 86
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D++L++ + K L+ KGH + V + + +SGS D +V +WD + KC
Sbjct: 87 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 143
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
L P +A D L+ + ++ G R++D G + D + VK
Sbjct: 144 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 200
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS-PEGMFVISG 269
FS +G+ +L T++ + + D +G L TY + + A+FS G +++SG
Sbjct: 201 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSG 256
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++ + +F+ S+ +V+ S DES+R++DV CLKT+ + V V F
Sbjct: 103 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 162
Query: 89 TTVIYSSKNG----WD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
+ ++ SS +G WD + L+ L DN + + K + ++ +
Sbjct: 163 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK----------FSPNGKYILAAT 212
Query: 141 LDRTVLLWDQRAEKC 155
LD T+ LWD KC
Sbjct: 213 LDNTLKLWDYSKGKC 227
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 191 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 249
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 250 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 307
Query: 147 LW 148
LW
Sbjct: 308 LW 309
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 113/237 (47%), Gaps = 11/237 (4%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
+SS+ F + +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S
Sbjct: 31 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 90
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D++L++ + K L+ KGH + V + + +SGS D +V +WD + KC
Sbjct: 91 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 147
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
L P +A D L+ + ++ G R++D G + D + VK
Sbjct: 148 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 204
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS-PEGMFVISG 269
FS +G+ +L T++ + + D +G L TY + + A+FS G +++SG
Sbjct: 205 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSG 260
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++ + +F+ S+ +V+ S DES+R++DV CLKT+ + V V F
Sbjct: 107 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 166
Query: 89 TTVIYSSKNG----WD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
+ ++ SS +G WD + L+ L DN + + K + ++ +
Sbjct: 167 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK----------FSPNGKYILAAT 216
Query: 141 LDRTVLLWDQRAEKC 155
LD T+ LWD KC
Sbjct: 217 LDNTLKLWDYSKGKC 231
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 195 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 253
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 254 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 311
Query: 147 LW 148
LW
Sbjct: 312 LW 313
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 100/211 (47%), Gaps = 9/211 (4%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
+SS+ F + +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D++L++ + K L+ KGH + V + + +SGS D +V +WD + C
Sbjct: 89 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL 145
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
L P +A D L+ + ++ G R++D G + D + VK
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 202
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 244
FS +G+ +L T++ + + D +G L TY
Sbjct: 203 FSPNGKYILAATLDNDLKLWDYSKGKCLKTY 233
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 18/135 (13%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++ + +F+ S+ +V+ S DES+R++DV CLKT+ + V V F
Sbjct: 105 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDG 164
Query: 89 TTVIYSSKNG----WD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
+ ++ SS +G WD + L+ L DN + + K + ++ +
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK----------FSPNGKYILAAT 214
Query: 141 LDRTVLLWDQRAEKC 155
LD + LWD KC
Sbjct: 215 LDNDLKLWDYSKGKC 229
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D ++L+D + CLKT ++KY + F+
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 251
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 252 GKWIVSGSE--DNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 309
Query: 147 LW 148
LW
Sbjct: 310 LW 311
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 100/211 (47%), Gaps = 9/211 (4%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
+SS+ F + +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D++L++ + K L+ KGH + V + + +SGS D +V +WD + C
Sbjct: 89 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL 145
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
L P +A D L+ + ++ G R++D G + D + VK
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 202
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 244
FS +G+ +L T++ + + D +G L TY
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++ + +F+ S+ +V+ S DES+R++DV CLKT+ + V V F
Sbjct: 105 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDG 164
Query: 89 TTVIYSSKNG----WD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
+ ++ SS +G WD + L+ L DN + + K + ++ +
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK----------FSPNGKYILAAT 214
Query: 141 LDRTVLLWDQRAEKC 155
LD T+ LWD KC
Sbjct: 215 LDNTLKLWDYSKGKC 229
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 251
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 252 GKWIVSGSE--DNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 309
Query: 147 LW 148
LW
Sbjct: 310 LW 311
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 47/234 (20%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYS-S 95
+S+ F S ++TAS D + L+DV + L++ + +G D++C P+ +
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG--HGADVLCLDLAPSETGNTFV 214
Query: 96 KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC 155
G D+ + + + ++ F+ H V S+ S D F SGS D T L+D RA+
Sbjct: 215 SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD-- 272
Query: 156 QGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS 215
R A Y + ++F A+ V FS
Sbjct: 273 --------REVAIYSKESIIFG-------------------------------ASSVDFS 293
Query: 216 NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 269
GRL+ + I+V D +G+ +S +R STL SP+G SG
Sbjct: 294 LSGRLLFAGYNDYTINVWDVLKGSRVSIL-FGHENRVSTLR--VSPDGTAFCSG 344
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 5/130 (3%)
Query: 21 LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA--ATCLKTINSKKYG 78
++S + +F + ++S+ ++ S + SDD + RLYD+ A + + S +G
Sbjct: 227 MRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG 286
Query: 79 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
V F S ++++ N D ++ + + + GH +RV +L + F S
Sbjct: 287 ASSVDF-SLSGRLLFAGYN--DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCS 343
Query: 139 GSLDRTVLLW 148
GS D T+ +W
Sbjct: 344 GSWDHTLRVW 353
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 13/143 (9%)
Query: 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAY 169
K R KGH ++V+ + C K +S S D V++WD + + + A AY
Sbjct: 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY 114
Query: 170 DDQGLVFAVAFGG-------YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLML 222
G A+A GG Y FD K E SV + + F+N +L
Sbjct: 115 APSGC--AIACGGLDNKCSVYPLTFD--KNENMAAKKKSVAMHTNYLSACSFTNSDMQIL 170
Query: 223 LTTMEGHIHVLDSFRGTLLSTYN 245
+ +G + D G LL +++
Sbjct: 171 TASGDGTCALWDVESGQLLQSFH 193
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 27/223 (12%)
Query: 29 SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
+ +NG ++S+ + L++AS D+++ + +T + +K+GV + F H
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 64
Query: 88 PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
V Y+ WD++LRL + + + F GH V+S+ + IS
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 139 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191
GS D+T+ +W + + LL +V+ P DD + A G +M A
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKMVKAWN 182
Query: 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234
+ + +G + S+ N + S DG L+ +G I + +
Sbjct: 183 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 73/168 (43%), Gaps = 21/168 (12%)
Query: 21 LQSMEVGMSFRDYNGR---ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY 77
L + G +++ + G + S+D K +S +++ S D++I+++ + CL T+
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHND 149
Query: 78 GVDLVCFTSHP-----TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS 132
V V + + I S+ N D+ ++ +L+ + F GH+ + +L+
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGN--DKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
Query: 133 KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF 180
S D ++LW+ A+K L Q VF++AF
Sbjct: 208 GTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE----------VFSLAF 245
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 27/223 (12%)
Query: 29 SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
+ +NG ++S+ + L++AS D+++ + +T + +K+GV + F H
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 64
Query: 88 PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
V Y+ WD++LRL + + + F GH V+S+ + IS
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 139 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191
GS D+T+ +W + + LL +V+ P DD + A G +M A
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKMVKAWN 182
Query: 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234
+ + +G + S+ N + S DG L+ +G I + +
Sbjct: 183 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 73/168 (43%), Gaps = 21/168 (12%)
Query: 21 LQSMEVGMSFRDYNGR---ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY 77
L + G +++ + G + S+D K +S +++ S D++I+++ + CL T+
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHND 149
Query: 78 GVDLVCFTSHP-----TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS 132
V V + + I S+ N D+ ++ +L+ + F GH+ + +L+
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGN--DKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
Query: 133 KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF 180
S D ++LW+ A+K L Q VF++AF
Sbjct: 208 GTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE----------VFSLAF 245
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 27/223 (12%)
Query: 29 SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
+ +NG ++S+ + L++AS D+++ + +T + +K+GV + F H
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 64
Query: 88 PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
V Y+ WD++LRL + + + F GH V+S+ + IS
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 139 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191
GS D+T+ +W + + LL +V+ P DD + A G +M A
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKMVKAWN 182
Query: 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234
+ + +G + S+ N + S DG L+ +G I + +
Sbjct: 183 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 73/168 (43%), Gaps = 21/168 (12%)
Query: 21 LQSMEVGMSFRDYNGR---ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY 77
L + G +++ + G + S+D K +S +++ S D++I+++ + CL T+
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHND 149
Query: 78 GVDLVCFTSHP-----TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS 132
V V + + I S+ N D+ ++ +L+ + F GH+ + +L+
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGN--DKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
Query: 133 KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF 180
S D ++LW+ A+K L Q VF++AF
Sbjct: 208 GTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE----------VFSLAF 245
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 27/223 (12%)
Query: 29 SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
+ +NG ++S+ + L++AS D+++ + +T + +K+GV + F H
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 64
Query: 88 PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
V Y+ WD++LRL + + + F GH V+S+ + IS
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 139 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191
GS D+T+ +W + + LL +V+ P DD + A G +M A
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKMVKAWN 182
Query: 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234
+ + +G + S+ N + S DG L+ +G I + +
Sbjct: 183 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 73/168 (43%), Gaps = 21/168 (12%)
Query: 21 LQSMEVGMSFRDYNGR---ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY 77
L + G +++ + G + S+D K +S +++ S D++I+++ + CL T+
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHND 149
Query: 78 GVDLVCFTSHP-----TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS 132
V V + + I S+ N D+ ++ +L+ + F GH+ + +L+
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGN--DKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
Query: 133 KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF 180
S D ++LW+ A+K L Q VF++AF
Sbjct: 208 GTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE----------VFSLAF 245
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 27/223 (12%)
Query: 29 SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
+ +NG ++S+ + L++AS D+++ + +T + +K+GV + F H
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 58
Query: 88 PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
V Y+ WD++LRL + + + F GH V+S+ + IS
Sbjct: 59 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 118
Query: 139 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191
GS D+T+ +W + + LL +V+ P DD + A G +M A
Sbjct: 119 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKMVKAWN 176
Query: 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234
+ + +G + S+ N + S DG L+ +G I + +
Sbjct: 177 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWN 218
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 73/168 (43%), Gaps = 21/168 (12%)
Query: 21 LQSMEVGMSFRDYNGR---ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY 77
L + G +++ + G + S+D K +S +++ S D++I+++ + CL T+
Sbjct: 85 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHND 143
Query: 78 GVDLVCFTSHP-----TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS 132
V V + + I S+ N D+ ++ +L+ + F GH+ + +L+
Sbjct: 144 WVSQVRVVPNEKADDDSVTIISAGN--DKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 201
Query: 133 KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF 180
S D ++LW+ A+K L Q VF++AF
Sbjct: 202 GTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE----------VFSLAF 239
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 44 KSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103
K +L++ S D++I+++DV+ CL T+ V V F S ++ + D++L
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD---DKTL 362
Query: 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR 151
R+ + + ++ H V SL + ++GS+D+TV +W+ R
Sbjct: 363 RVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 61/132 (46%), Gaps = 3/132 (2%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + + + + F S L + S D +I+L+D C++T++ + V V +
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 204
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLW 148
++ +S+ D+++++ + ++ F GH + V + S S D+TV +W
Sbjct: 205 DHIVSASR---DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Query: 149 DQRAEKCQGLLR 160
++C+ LR
Sbjct: 262 VVATKECKAELR 273
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
++ + FH S +V+AS+D +I+++D +T+ V + F H ++ S
Sbjct: 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF-DHSGKLLASCS 169
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC 155
D +++L + +R GH V S+S+ + D +S S D+T+ +W+ + C
Sbjct: 170 A--DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 226
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 64/155 (41%), Gaps = 23/155 (14%)
Query: 21 LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD 80
Q E + ++ +SS+ + ++V+AS D++I++++V C+KT + V
Sbjct: 179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 238
Query: 81 LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC----- 135
+V + T+I S N D+++R+ + + + H V +S
Sbjct: 239 MV-RPNQDGTLIASCSN--DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISE 295
Query: 136 ---------------FISGSLDRTVLLWDQRAEKC 155
+SGS D+T+ +WD C
Sbjct: 296 ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 330
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 32/52 (61%)
Query: 28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGV 79
M+ ++ + + FH ++++ +DD+++R++D C+KT+N+ ++ V
Sbjct: 332 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFV 383
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 23/26 (88%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYD 62
++S+DFHK++ Y+VT S D+++++++
Sbjct: 383 VTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/130 (16%), Positives = 53/130 (40%), Gaps = 17/130 (13%)
Query: 47 SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG-------- 98
+ + + S+D+++R++ V C + ++ V+ + + + S G
Sbjct: 247 TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGK 306
Query: 99 ---------WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
D+++++ + L GH + V + S +S + D+T+ +WD
Sbjct: 307 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366
Query: 150 QRAEKCQGLL 159
+ ++C L
Sbjct: 367 YKNKRCMKTL 376
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 27/223 (12%)
Query: 29 SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
+ +NG ++S+ + L++AS D+++ + +T + +K+GV + F H
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 64
Query: 88 PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
V Y+ WD++LRL + + + F GH V S+ + IS
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIIS 124
Query: 139 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191
GS D+T+ +W + + LL +V+ P DD + A G + A
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKXVKAWN 182
Query: 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234
+ + +G + S+ N + S DG L+ +G I + +
Sbjct: 183 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIXLWN 224
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 72/168 (42%), Gaps = 21/168 (12%)
Query: 21 LQSMEVGMSFRDYNGR---ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY 77
L + G +++ + G + S+D K +S +++ S D++I+++ + CL T+
Sbjct: 91 LWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKG-QCLATLLGHND 149
Query: 78 GVDLVCFTSHP-----TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS 132
V V + + I S+ N D+ ++ +L+ + F GH+ + +L+
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGN--DKXVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
Query: 133 KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF 180
S D + LW+ A+K L Q VF++AF
Sbjct: 208 GTLIASAGKDGEIXLWNLAAKKAXYTLSAQDE----------VFSLAF 245
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 15/139 (10%)
Query: 21 LQSMEVGMSFRDYNGR---ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY 77
L + G+S R + G + S+ F + +V+AS D +I+L++ T C TI+
Sbjct: 456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN-TLGECKYTISEGGE 514
Query: 78 G----VDLVCF---TSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLC 130
G V V F T PT V S WD+++++ +L + K GH V ++++
Sbjct: 515 GHRDWVSCVRFSPNTLQPTIVSAS----WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS 570
Query: 131 SSKDCFISGSLDRTVLLWD 149
SG D VLLWD
Sbjct: 571 PDGSLCASGGKDGVVLLWD 589
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Query: 49 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP---TTVIYSS------KNGW 99
+V+AS D+SI L+ +T + K YGV T H V+ SS W
Sbjct: 398 IVSASRDKSIILWKLTK-------DDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW 450
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE 153
D LRL L R F GH V+S++ +S S DRT+ LW+ E
Sbjct: 451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE 504
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 83
+++ +F + + R+ +DFH + +++T + L++ +++I + V
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 84 FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
F + +I S D +R+ + + + + F+ H D + S+++ +K +SGS D
Sbjct: 63 FIARKNWIIVGSD---DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 144 TVLLWD 149
TV LW+
Sbjct: 120 TVKLWN 125
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 42 FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101
F ++++ SDD IR+++ T K ++ + + + HPT S + D
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYN--TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-DL 119
Query: 102 SLRLLSLHDNKYL-RYFKGHHDRVVSLSLCSSKD--CFISGSLDRTVLLW 148
+++L + +N L + F+GH V+ ++ + KD F SG LDRTV +W
Sbjct: 120 TVKLWNWENNWALEQTFEGHEHFVMCVAF-NPKDPSTFASGCLDRTVKVW 168
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 48 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT--TVIYSSKNG 98
Y++TASDD +I+++D +C+ T+ V F HPT +I S++G
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF--HPTLPIIISGSEDG 250
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 42 FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL-VCFTSHPTTVIYSSKNGWD 100
FH + +++ S+D ++++++ + KT+N G++ C +HPT +G+D
Sbjct: 236 FHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN---VGLERSWCIATHPTGRKNYIASGFD 292
Query: 101 ESLRLLSLHDNK 112
+LSL +++
Sbjct: 293 NGFTVLSLGNDE 304
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 83
+++ +F + + R+ +DFH + +++T + L++ +++I + V
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 84 FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
F + +I S D +R+ + + + + F+ H D + S+++ +K +SGS D
Sbjct: 63 FIARKNWIIVGSD---DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 144 TVLLWD 149
TV LW+
Sbjct: 120 TVKLWN 125
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 42 FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101
F ++++ SDD IR+++ T K ++ + + + HPT S + D
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYN--TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-DL 119
Query: 102 SLRLLSLHDNKYL-RYFKGHHDRVVSLSLCSSKD--CFISGSLDRTVLLW 148
+++L + +N L + F+GH V+ ++ + KD F SG LDRTV +W
Sbjct: 120 TVKLWNWENNWALEQTFEGHEHFVMCVAF-NPKDPSTFASGCLDRTVKVW 168
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 48 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT--TVIYSSKNG 98
Y++TASDD +I+++D +C+ T+ V F HPT +I S++G
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF--HPTLPIIISGSEDG 250
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 42 FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL-VCFTSHPTTVIYSSKNGWD 100
FH + +++ S+D ++++++ + KT+N G++ C +HPT +G+D
Sbjct: 236 FHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN---VGLERSWCIATHPTGRKNYIASGFD 292
Query: 101 ESLRLLSLHDNK 112
+LSL +++
Sbjct: 293 NGFTVLSLGNDE 304
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 83
+++ +F + + R+ +DFH + +++T + L++ +++I + V
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 84 FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
F + +I S D +R+ + + + + F+ H D + S+++ +K +SGS D
Sbjct: 63 FIARKNWIIVGSD---DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 144 TVLLWD 149
TV LW+
Sbjct: 120 TVKLWN 125
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 42 FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101
F ++++ SDD IR+++ T K ++ + + + HPT S + D
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYN--TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-DL 119
Query: 102 SLRLLSLHDNKYL-RYFKGHHDRVVSLSLCSSKD--CFISGSLDRTVLLW 148
+++L + +N L + F+GH V+ ++ + KD F SG LDRTV +W
Sbjct: 120 TVKLWNWENNWALEQTFEGHEHFVMCVAF-NPKDPSTFASGCLDRTVKVW 168
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 48 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT--TVIYSSKNG 98
Y++TASDD +I+++D +C+ T+ V F HPT +I S++G
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF--HPTLPIIISGSEDG 250
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 42 FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL-VCFTSHPTTVIYSSKNGWD 100
FH + +++ S+D ++++++ + KT+N G++ C +HPT +G+D
Sbjct: 236 FHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN---VGLERSWCIATHPTGRKNYIASGFD 292
Query: 101 ESLRLLSLHDNK 112
+LSL +++
Sbjct: 293 NGFTVLSLGNDE 304
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
D +R+ + + K + +GH + SL S D +SGS DRTV +WD R +C L
Sbjct: 144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203
Query: 160 RVQG---RPAAAYDDQGLVFAVAFGGYIRMFDAR 190
++ A + D + A + +R++D+
Sbjct: 204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 40/187 (21%)
Query: 48 YLVTASDDESIRLYDVTAATCLKTINSK-------KYGVDLVCFTSHPTTVIYSSKNGWD 100
Y+ S D ++R++D ++ ++S+ K V V FT +V+ S D
Sbjct: 221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS---LD 277
Query: 101 ESLRLLSLH------DNKYLR------YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLW 148
S++L +L D+K + GH D V+S++ + + +SGS DR VL W
Sbjct: 278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 337
Query: 149 DQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGP-FDIFSVGGDIS 207
D+++ LL +QG + + + AVA G + GP +++F+ G
Sbjct: 338 DKKSG--NPLLMLQG-----HRNSVISVAVANGSSL----------GPEYNVFATGSGDC 380
Query: 208 DANVVKF 214
A + K+
Sbjct: 381 KARIWKY 387
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 83
+++ +F + + R+ +DFH + +++T + +++ +++I + V
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGK 62
Query: 84 FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
F + +I S D +R+ + + + + F+ H D + S+++ +K +SGS D
Sbjct: 63 FIARKNWIIVGSD---DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 144 TVLLWD 149
TV LW+
Sbjct: 120 TVKLWN 125
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 42 FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101
F ++++ SDD IR+++ T K ++ + + + HPT S + D
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYN--TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-DL 119
Query: 102 SLRLLSLHDNKYL-RYFKGHHDRVVSLSLCSSKD--CFISGSLDRTVLLW 148
+++L + +N L + F+GH V+ ++ + KD F SG LDRTV +W
Sbjct: 120 TVKLWNWENNWALEQTFEGHEHFVMCVAF-NPKDPSTFASGCLDRTVKVW 168
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 48 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT--TVIYSSKNG 98
Y++TASDD +I+++D +C+ T+ V F HPT +I S++G
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF--HPTLPIIISGSEDG 250
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 42 FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL-VCFTSHPTTVIYSSKNGWD 100
FH + +++ S+D ++++++ + KT+N G++ C +HPT +G+D
Sbjct: 236 FHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN---VGLERSWCIATHPTGRKNYIASGFD 292
Query: 101 ESLRLLSLHDNK 112
+LSL +++
Sbjct: 293 NGFTVLSLGNDE 304
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI 92
+ ++ +DF Y+V+AS D +I++++ + ++T+N K G+ C V+
Sbjct: 255 HRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYRDRLVV 310
Query: 93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
S D ++RL + LR +GH + V + + + +SG+ D + +WD
Sbjct: 311 SGSS---DNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR--IVSGAYDGKIKVWD 362
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 19/148 (12%)
Query: 49 LVTASDDESIRLYDVTAATCL---KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 105
+VT S D SI ++D+ + T + + + + V++V F Y D ++++
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-----YIVSASGDRTIKV 280
Query: 106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV-QGR 164
+ +++R GH + L +SGS D T+ LWD +C LRV +G
Sbjct: 281 WNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDI---ECGACLRVLEGH 335
Query: 165 P----AAAYDDQGLVFAVAFGGYIRMFD 188
+D++ +V A+ G I+++D
Sbjct: 336 EELVRCIRFDNKRIVSG-AYDGKIKVWD 362
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 49 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 108
+V+ S D +IRL+D+ CL+ + + V + F + ++ + +G + L++
Sbjct: 309 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK--RIVSGAYDGKIKVWDLVAA 366
Query: 109 HDNKY------LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
D + LR H RV L + +S S D T+L+WD
Sbjct: 367 LDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIWD 411
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 17/147 (11%)
Query: 13 SLELSEEILQSMEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAATCLKT 71
+L + + M + + + +NG ++ + +++AS D++I ++ +T
Sbjct: 17 NLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTR------ 70
Query: 72 INSKKYGVDLVCFTSHP---TTVIYSS------KNGWDESLRLLSLHDNKYLRYFKGHHD 122
+ YG+ H + V+ SS WD +LRL L R F GH
Sbjct: 71 -DETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK 129
Query: 123 RVVSLSLCSSKDCFISGSLDRTVLLWD 149
V+S++ S +SGS D+T+ LW+
Sbjct: 130 DVLSVAFSSDNRQIVSGSRDKTIKLWN 156
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 21 LQSMEVGMSFRDYNGR---ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY 77
L + G + R + G + S+ F + +V+ S D++I+L++ T C T+ + +
Sbjct: 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQDESH 170
Query: 78 GVDLVCFTSHPTT---VIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD 134
+ C P + +I S GWD+ +++ +L + K GH + ++++
Sbjct: 171 SEWVSCVRFSPNSSNPIIVSC--GWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS 228
Query: 135 CFISGSLDRTVLLWD 149
SG D +LWD
Sbjct: 229 LCASGGKDGQAMLWD 243
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI 92
++ ++ + F + +ASDD++++L++ L+T+ V V F+ T+
Sbjct: 261 HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIA 319
Query: 93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA 152
+S D++++L + + ++L+ GH V ++ S S D+TV LW++
Sbjct: 320 SASD---DKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 375
Query: 153 EKCQGL 158
+ Q L
Sbjct: 376 QLLQTL 381
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 100/232 (43%), Gaps = 22/232 (9%)
Query: 42 FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101
F + +ASDD++++L++ L+T+ V V F+ T+ +S D+
Sbjct: 106 FSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASD---DK 161
Query: 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-- 159
+++L + + + L+ GH V ++ S S D+TV LW++ + Q L
Sbjct: 162 TVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH 220
Query: 160 --RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN 216
V+G A+ G A A +++++ G + ++ G S N V F
Sbjct: 221 SSSVRG---VAFSPDGQTIASASDDKTVKLWN----RNGQL-LQTLTGHSSSVNGVAFRP 272
Query: 217 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS 268
DG+ + + + + + + G LL T +S +FSP+G + S
Sbjct: 273 DGQTIASASDDKTVKLWNR-NGQLLQTLTGH---SSSVWGVAFSPDGQTIAS 320
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 100/232 (43%), Gaps = 22/232 (9%)
Query: 42 FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101
F + +ASDD++++L++ L+T+ V V F+ T+ +S D+
Sbjct: 352 FSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIASASD---DK 407
Query: 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-- 159
+++L + + + L+ GH V ++ S S D+TV LW++ + Q L
Sbjct: 408 TVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGH 466
Query: 160 --RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN 216
V+G A+ G A A +++++ G + ++ G S V FS
Sbjct: 467 SSSVRG---VAFSPDGQTIASASDDKTVKLWN----RNGQL-LQTLTGHSSSVRGVAFSP 518
Query: 217 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS 268
DG+ + + + + + + G LL T +S +FSP+G + S
Sbjct: 519 DGQTIASASDDKTVKLWNR-NGQLLQTLTGH---SSSVWGVAFSPDGQTIAS 566
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 42 FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101
F + +ASDD++++L++ L+T+ V V F+ T+ +S D+
Sbjct: 475 FSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIASASD---DK 530
Query: 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
+++L + + + L+ GH V ++ S S D+TV LW+
Sbjct: 531 TVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 82 VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL 141
V F+ T+ +S D++++L + + + L+ GH V ++ S S
Sbjct: 22 VAFSPDGQTIASASD---DKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 77
Query: 142 DRTVLLWDQRAEKCQGL 158
D+TV LW++ + Q L
Sbjct: 78 DKTVKLWNRNGQLLQTL 94
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 17/140 (12%)
Query: 20 ILQSMEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAATCLKTINSKKYG 78
+ + M + + + +NG ++ + +++AS D++I ++ +T + YG
Sbjct: 1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTR-------DETNYG 53
Query: 79 VDLVCFTSHP---TTVIYSS------KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSL 129
+ H + V+ SS WD +LRL L R F GH V+S++
Sbjct: 54 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF 113
Query: 130 CSSKDCFISGSLDRTVLLWD 149
S +SGS D+T+ LW+
Sbjct: 114 SSDNRQIVSGSRDKTIKLWN 133
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 21 LQSMEVGMSFRDYNGR---ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY 77
L + G + R + G + S+ F + +V+ S D++I+L++ T C T+ + +
Sbjct: 89 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQDESH 147
Query: 78 GVDLVCFTSHPTT---VIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD 134
+ C P + +I S GWD+ +++ +L + K GH + ++++
Sbjct: 148 SEWVSCVRFSPNSSNPIIVSC--GWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS 205
Query: 135 CFISGSLDRTVLLWD 149
SG D +LWD
Sbjct: 206 LCASGGKDGQAMLWD 220
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ R ++ +S + + ++ S D ++RL+D+T T + V V F+S
Sbjct: 58 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN 117
Query: 89 TTVIYSSKNGWDESLRLL-SLHDNKYLRYFKGHHDRV--VSLSLCSSKDCFISGSLDRTV 145
++ S+ D++++L +L KY + H + V V S SS +S D+ V
Sbjct: 118 RQIVSGSR---DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 174
Query: 146 LLWD 149
+W+
Sbjct: 175 KVWN 178
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 15/125 (12%)
Query: 117 FKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWD-QRAEKCQGLLRVQGRPAAAY----- 169
KGH+ V ++ D +S S D+T+++W R E G+ + R + +
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 170 --DDQGLVFAVAFGGYIRMFD------ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM 221
D + ++ G +R++D R++ D+ SV + +V S D +
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 222 LLTTM 226
L T+
Sbjct: 131 LWNTL 135
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 77/190 (40%), Gaps = 29/190 (15%)
Query: 30 FRDYNGRISSMDF--HKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
F +N + +D +K+ Y+VT S D ++ ++ + + + + +++ LV T
Sbjct: 199 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD-HGEEHDYPLVFHTPE 257
Query: 88 PTTVIYSSKNGWDESLRLLSLHDN-------------------KYLRYFKGHHDRVVSLS 128
G S+R +S H N K L GH DR+ S
Sbjct: 258 ENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI 317
Query: 129 LCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA----YDDQGLVFAVAFGGYI 184
+ IS S+D T+ +WD E + + +QG A D+ LV A A G I
Sbjct: 318 YDHERKRCISASMDTTIRIWD--LENGELMYTLQGHTALVGLLRLSDKFLVSAAA-DGSI 374
Query: 185 RMFDARKYEK 194
R +DA Y +
Sbjct: 375 RGWDANDYSR 384
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 47 SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 106
+Y++T +DD+ IR+YD L ++ GV + + +H ++ S D ++R+
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGST---DRTVRVW 188
Query: 107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDC--FISGSLDRTVLLWDQRAE 153
+ F+GH+ V L + K+ ++GS D T+ +W E
Sbjct: 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 237
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 9/111 (8%)
Query: 53 SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI--------YSSKNGWDESLR 104
S + +RL + LK + K+ H T+VI Y D+ +R
Sbjct: 86 SQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIR 145
Query: 105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC 155
+ + K+L GH V +L +SGS DRTV +WD + C
Sbjct: 146 VYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCC 195
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVD 80
E + + + S+ + S + L T S D+S+ +++V C+ +NS V
Sbjct: 95 FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154
Query: 81 LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL--RYFKGHHDRVVSLSLCSSKDCFIS 138
V + HP+ + +S + +D++++L ++ ++ +GH V SL+ S S
Sbjct: 155 HVVW--HPSQELLASAS-YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLAS 211
Query: 139 GSLDRTVLLWDQ 150
S DRTV +W Q
Sbjct: 212 CSDDRTVRIWRQ 223
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 6/132 (4%)
Query: 21 LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD 80
LQ+ + F + + S+ F + +V+ D ++R+++V C+ T++ +
Sbjct: 96 LQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG-ECMHTLSRGAHTDW 154
Query: 81 LVCFTSHPT---TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFI 137
+ C P+ VI S GWD +++ L + + KGH + V S+++
Sbjct: 155 VSCVRFSPSLDAPVIVSG--GWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCA 212
Query: 138 SGSLDRTVLLWD 149
S D LWD
Sbjct: 213 SSDKDGVARLWD 224
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 26/157 (16%)
Query: 99 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL 158
WD SLRL +L + + F GH V+S++ +SG D + +W+ + E L
Sbjct: 87 WDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTL 146
Query: 159 LRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG 218
R A+ D V V F DA G +D N+VK +
Sbjct: 147 SR------GAHTD--WVSCVRFS---PSLDAPVIVSGGWD-----------NLVKVWDLA 184
Query: 219 RLMLLTTMEGHIHVLDSFR----GTLLSTYNVKPVSR 251
L+T ++GH + + S G+L ++ + V+R
Sbjct: 185 TGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVAR 221
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 29/190 (15%)
Query: 30 FRDYNGRISSMDF--HKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
F +N + +D +K+ Y+VT S D ++ ++ + + + + +++ LV T
Sbjct: 199 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD-HGEEHDYPLVFHTPE 257
Query: 88 PTTVIYSSKNGWDESLRLLSLHDN-------------------KYLRYFKGHHDRVVSLS 128
G S+R +S H N K L GH DR+ S
Sbjct: 258 ENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTI 317
Query: 129 LCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA----YDDQGLVFAVAFGGYI 184
+ IS S D T+ +WD E + +QG A D+ LV A A G I
Sbjct: 318 YDHERKRCISASXDTTIRIWD--LENGELXYTLQGHTALVGLLRLSDKFLVSAAA-DGSI 374
Query: 185 RMFDARKYEK 194
R +DA Y +
Sbjct: 375 RGWDANDYSR 384
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 47 SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 106
+Y++T +DD+ IR+YD L ++ GV + + +H ++ S D ++R+
Sbjct: 133 NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGST---DRTVRVW 188
Query: 107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDC--FISGSLDRTVLLWDQRAE 153
+ F+GH+ V L + K+ ++GS D T+ +W E
Sbjct: 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 237
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 9/111 (8%)
Query: 53 SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI--------YSSKNGWDESLR 104
S + +RL + LK + K+ H T+VI Y D+ +R
Sbjct: 86 SQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHXTSVITCLQFEDNYVITGADDKXIR 145
Query: 105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC 155
+ + K+L GH V +L +SGS DRTV +WD + C
Sbjct: 146 VYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCC 195
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 30/141 (21%)
Query: 115 RYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAY-DDQ 172
+ GH V+SLS+ S + + FISGS D TV LWD LR+ R Y +
Sbjct: 199 EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWD---------LRITSRAVRTYHGHE 249
Query: 173 GLVFAVAF------------GGYIRMFDARKYEKGPFDIFSVGGDISDANV-----VKFS 215
G + +V F G R+FD R + +++ D +D + V FS
Sbjct: 250 GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ--LQVYNREPDRNDNELPIVTSVAFS 307
Query: 216 NDGRLMLLTTMEGHIHVLDSF 236
GRL+ G +V D+
Sbjct: 308 ISGRLLFAGYSNGDCYVWDTL 328
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 100/260 (38%), Gaps = 25/260 (9%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++G++ S+D+ +++V+AS D + +++ + I V F +
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 89 TTVIYSSKNGWDESLRLLSLHDN-------KYLRYFKGHHDRVVSLSLCSSKDC-FISGS 140
+V + G D + + +L R GH S ++ I+GS
Sbjct: 121 QSV---ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGS 177
Query: 141 LDRTVLLWDQRAEKCQGLLRVQGRPAAAYD---------DQGLVFAVAFGGYIRMFDARK 191
D+T +LWD + + + D + + + + +R++D R
Sbjct: 178 GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI 237
Query: 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
+ + + G D N VKF DG+ + +G + D G L YN +P R
Sbjct: 238 TSRA---VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP-DR 293
Query: 252 NSTLEASFSPEGMFVISGRV 271
N E F ISGR+
Sbjct: 294 NDN-ELPIVTSVAFSISGRL 312
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 16/132 (12%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD-------L 81
++ + G I+S+ F T SDD + RL+D+ L+ N + D
Sbjct: 244 TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTS 303
Query: 82 VCFTSHPTTVIYSSKNG----WDESLRLLSLHDNKYLRYFKGHHD-RVVSLSLCSSKDCF 136
V F+ + NG WD L + L+ L + H+ R+ L L S
Sbjct: 304 VAFSISGRLLFAGYSNGDCYVWDTLLAEMVLN----LGTLQNSHEGRISCLGLSSDGSAL 359
Query: 137 ISGSLDRTVLLW 148
+GS D+ + +W
Sbjct: 360 CTGSWDKNLKIW 371
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 9/164 (5%)
Query: 23 SMEVGMSFRDYNGRISSMDF-HKSSSYLVTASDDESIRLYDVTAATCLKTINSK---KYG 78
+M V + G SS + + L+T S D++ L+DVT + S+ +
Sbjct: 146 NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT 205
Query: 79 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLH-DNKYLRYFKGHHDRVVSLSLCSSKDCFI 137
D++ + + D ++RL L ++ +R + GH + S+ F
Sbjct: 206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFG 265
Query: 138 SGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQ-GLVFAVAF 180
+GS D T L+D R L+V R D++ +V +VAF
Sbjct: 266 TGSDDGTCRLFDMRTGH---QLQVYNREPDRNDNELPIVTSVAF 306
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 15/142 (10%)
Query: 21 LQSMEVGMSFRDYNGRIS---SMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY 77
L + G +++ + G S S+ F + +++A + I+L+++ + + +
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENH 161
Query: 78 GVDLVCFTSHPTT---------VIYSSKNGWDESLRLLSLHDNKYLRY-FKGHHDRVVSL 127
+ C P Y + GWD L++ + N +RY FK H V L
Sbjct: 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW--NTNFQIRYTFKAHESNVNHL 219
Query: 128 SLCSSKDCFISGSLDRTVLLWD 149
S+ + +G D+ +L+WD
Sbjct: 220 SISPNGKYIATGGKDKKLLIWD 241
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 99 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
WD++LRL L + F GH V S++ +S +R + LW+
Sbjct: 96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 9/60 (15%)
Query: 100 DESLRLLSLHDNKYLRYF-------KGHHDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQR 151
D+++ + L++ + YF GH+ V L+L S ++CF IS S D+T+ LWD R
Sbjct: 48 DKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLAL-SQENCFAISSSWDKTLRLWDLR 106
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 94/224 (41%), Gaps = 29/224 (12%)
Query: 46 SSYLVTASDDESIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103
S T D +IR++DVT + C++ T++ ++ G V + I S D +L
Sbjct: 264 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS--LDGTL 321
Query: 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA---EKCQGLLR 160
L ++ L+ GH+ + +L++ + ISGS D ++ W + + ++
Sbjct: 322 NFYELGHDEVLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSMHQDHSNLIVS 377
Query: 161 VQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL 220
+ A Y ++++ +++ K+E G S V +NDG
Sbjct: 378 LDNSKAQEYS------SISWDDTLKVNGITKHEFG-----------SQPKVASANNDGFT 420
Query: 221 MLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM 264
+LT + + +L SF G ++ + + +L ++ G+
Sbjct: 421 AVLTN-DDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGL 463
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 7/138 (5%)
Query: 57 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY 116
+I +Y +T T + + ++ F ++ +S +G +LR+ +
Sbjct: 228 AIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDG---TLRIWHGGNGNSQNC 284
Query: 117 FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGL 174
F GH +VS S D IS S+D +V LW + L V G P A G
Sbjct: 285 FYGHSQSIVSASWVGD-DKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQ 343
Query: 175 VFAVAF-GGYIRMFDARK 191
+AVAF G + ++D +K
Sbjct: 344 KYAVAFMDGQVNVYDLKK 361
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 49 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFT----SHPTTVIYSSKNGWDESLR 104
++ ASD ++ L+++ L KY D + T S T + K D S++
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK---DFSVK 164
Query: 105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC-FISGSLDRTVLLWDQRAEK 154
+ L L+ + H V ++ C KD F+S D +LLWD R K
Sbjct: 165 VWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK 215
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 70/154 (45%), Gaps = 12/154 (7%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
I+ + F + +V+ SDD +++++ CL+T+ GV ++S I S
Sbjct: 122 ITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISG 175
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
+ D +L++ + + + GH V + L + +SGS D T+ +WD +C
Sbjct: 176 ST-DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCL 232
Query: 157 GLL--RVQGRPAAAYDDQGLVFAVAFGGYIRMFD 188
+L V YD + +V A+ ++++D
Sbjct: 233 HVLMGHVAAVRCVQYDGRRVVSG-AYDFMVKVWD 265
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 61/149 (40%), Gaps = 11/149 (7%)
Query: 49 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 108
+V+ + D ++++D TCL T+ V + F I+ D S+R+ +
Sbjct: 252 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG-----IHVVSGSLDTSIRVWDV 306
Query: 109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC----QGLLRVQGR 164
+ GH + L + +SG+ D TV +WD + +C QG + Q
Sbjct: 307 ETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 364
Query: 165 PAAAYDDQGLVFAVAFGGYIRMFDARKYE 193
++ V + G ++++D + E
Sbjct: 365 VTCLQFNKNFVITSSDDGTVKLWDLKTGE 393
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 25 EVGMSFRDYNGRISSMD-FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 83
E G G S++ H +V+ S D ++R++D+ CL + V V
Sbjct: 187 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ 246
Query: 84 FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
+ +D +++ L +GH +RV SL +SGSLD
Sbjct: 247 YDGRRVV-----SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH--VVSGSLDT 299
Query: 144 TVLLWDQRAEKC 155
++ +WD C
Sbjct: 300 SIRVWDVETGNC 311
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 18/127 (14%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK---YGVDLVCFT 85
+ + + R+ S+ F ++V+ S D SIR++DV C+ T+ + G++L
Sbjct: 274 TLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL---- 327
Query: 86 SHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKG---HHDRVVSLSLCSSKDCFISGSLD 142
I S N D ++++ + + L+ +G H V L +K+ I+ S D
Sbjct: 328 ---KDNILVSGNA-DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDD 381
Query: 143 RTVLLWD 149
TV LWD
Sbjct: 382 GTVKLWD 388
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 84 FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVS-LSLCSSKDCFISGSLD 142
F P Y ++ D + R L K L KGH D V++ L C ++ +SGS D
Sbjct: 84 FIHSPWKSAYIRQHRIDTNWRRGELKSPKVL---KGHDDHVITCLQFCGNR--IVSGSDD 138
Query: 143 RTVLLWDQRAEKC 155
T+ +W KC
Sbjct: 139 NTLKVWSAVTGKC 151
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 29/224 (12%)
Query: 46 SSYLVTASDDESIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103
S T D +IR++DVT + C++ T++ ++ G V + I S D +L
Sbjct: 264 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS--LDGTL 321
Query: 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLW---DQRAEKCQGLLR 160
L ++ L+ GH+ + +L++ + ISGS D + W + ++
Sbjct: 322 NFYELGHDEVLKTISGHNKGITALTV----NPLISGSYDGRIXEWSSSSXHQDHSNLIVS 377
Query: 161 VQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL 220
+ A Y ++++ +++ K+E G S V +NDG
Sbjct: 378 LDNSKAQEYS------SISWDDTLKVNGITKHEFG-----------SQPKVASANNDGFT 420
Query: 221 MLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM 264
+LT + + +L SF G ++ + + +L ++ G+
Sbjct: 421 AVLTN-DDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGL 463
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 73/173 (42%), Gaps = 19/173 (10%)
Query: 111 NKYLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDRTVLLWD-----------QRAEKCQGL 158
+K + GH V+ ++ C D I SGS D TV++W+ + +G
Sbjct: 71 DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH 130
Query: 159 LRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANV--VKFSN 216
+ G A Q ++ + I ++D + ++G D+ + V +S
Sbjct: 131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA----VLTLGPDVHPDTIYSVDWSR 186
Query: 217 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 269
DG L+ + + + V++ +GT+++ + +P + A F EG + +G
Sbjct: 187 DGALICTSCRDKRVRVIEPRKGTVVAEKD-RPHEGTRPVHAVFVSEGKILTTG 238
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 14/161 (8%)
Query: 120 HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFA 177
H V+SLSL F+SG+ D + LWD R C+ A + G FA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 178 VAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF 236
R+FD R ++ +S I V FS GRL+L + + +V D+
Sbjct: 243 TGSDDATCRLFDLRADQE--LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 237 ---RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPF 274
R +L+ ++ +R S L + +GM V +G F
Sbjct: 301 KADRAGVLAGHD----NRVSCL--GVTDDGMAVATGSWDSF 335
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 9/131 (6%)
Query: 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI 92
+ G + S+ + V+ + D S +L+DV C +T + ++ +CF +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV----SLSLCSSKDCFISGSLDRTVLLW 148
S D + RL L ++ L + HD ++ S+S S ++G D +W
Sbjct: 243 TGSD---DATCRLFDLRADQELMTYS--HDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 149 DQRAEKCQGLL 159
D G+L
Sbjct: 298 DALKADRAGVL 308
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 14/161 (8%)
Query: 120 HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFA 177
H V+SLSL F+SG+ D + LWD R C+ A + G FA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 178 VAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF 236
R+FD R ++ +S I V FS GRL+L + + +V D+
Sbjct: 243 TGSDDATCRLFDLRADQE--LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 237 ---RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPF 274
R +L+ ++ +R S L + +GM V +G F
Sbjct: 301 KADRAGVLAGHD----NRVSCL--GVTDDGMAVATGSWDSF 335
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 9/131 (6%)
Query: 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI 92
+ G + S+ + V+ + D S +L+DV C +T + ++ +CF +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV----SLSLCSSKDCFISGSLDRTVLLW 148
S D + RL L ++ L + HD ++ S+S S ++G D +W
Sbjct: 243 TGSD---DATCRLFDLRADQELMTYS--HDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 149 DQRAEKCQGLL 159
D G+L
Sbjct: 298 DALKADRAGVL 308
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 16/138 (11%)
Query: 21 LQSMEVGMSFRDYNGR---ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY 77
L + GM + + G I+++ F + + T SDD + RL+D+ A L T +
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269
Query: 78 --GVDLVCFTSHPTTVIYS----SKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS 131
G+ V F+ ++ + N WD +L ++ GH +RV L +
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWD------ALKADR-AGVLAGHDNRVSCLGVTD 322
Query: 132 SKDCFISGSLDRTVLLWD 149
+GS D + +W+
Sbjct: 323 DGMAVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 14/161 (8%)
Query: 120 HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFA 177
H V+SLSL F+SG+ D + LWD R C+ A + G FA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 178 VAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF 236
R+FD R ++ +S I V FS GRL+L + + +V D+
Sbjct: 243 TGSDDATCRLFDLRADQE--LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 237 ---RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPF 274
R +L+ ++ +R S L + +GM V +G F
Sbjct: 301 KADRAGVLAGHD----NRVSCL--GVTDDGMAVATGSWDSF 335
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 9/131 (6%)
Query: 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI 92
+ G + S+ + V+ + D S +L+DV C +T + ++ +CF +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV----SLSLCSSKDCFISGSLDRTVLLW 148
S D + RL L ++ L + HD ++ S+S S ++G D +W
Sbjct: 243 TGSD---DATCRLFDLRADQELMTYS--HDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 149 DQRAEKCQGLL 159
D G+L
Sbjct: 298 DALKADRAGVL 308
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 14/161 (8%)
Query: 120 HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFA 177
H V+SLSL F+SG+ D + LWD R C+ A + G FA
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 178 VAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF 236
R+FD R ++ +S I V FS GRL+L + + +V D+
Sbjct: 254 TGSDDATCRLFDLRADQE--LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 311
Query: 237 ---RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPF 274
R +L+ ++ +R S L + +GM V +G F
Sbjct: 312 KADRAGVLAGHD----NRVSCL--GVTDDGMAVATGSWDSF 346
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 9/131 (6%)
Query: 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI 92
+ G + S+ + V+ + D S +L+DV C +T + ++ +CF +
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV----SLSLCSSKDCFISGSLDRTVLLW 148
S D + RL L ++ L + HD ++ S+S S ++G D +W
Sbjct: 254 TGSD---DATCRLFDLRADQELMTYS--HDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 308
Query: 149 DQRAEKCQGLL 159
D G+L
Sbjct: 309 DALKADRAGVL 319
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 16/138 (11%)
Query: 21 LQSMEVGMSFRDYNGR---ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY 77
L + GM + + G I+++ F + + T SDD + RL+D+ A L T +
Sbjct: 221 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 280
Query: 78 --GVDLVCFTSHPTTVIYS----SKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS 131
G+ V F+ ++ + N WD +L ++ GH +RV L +
Sbjct: 281 ICGITSVSFSKSGRLLLAGYDDFNCNVWD------ALKADR-AGVLAGHDNRVSCLGVTD 333
Query: 132 SKDCFISGSLDRTVLLWD 149
+GS D + +W+
Sbjct: 334 DGMAVATGSWDSFLKIWN 351
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 14/161 (8%)
Query: 120 HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFA 177
H V+SLSL F+SG+ D + LWD R C+ A + G FA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 178 VAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF 236
R+FD R ++ +S I V FS GRL+L + + +V D+
Sbjct: 243 TGSDDATCRLFDLRADQE--LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 237 ---RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPF 274
R +L+ ++ +R S L + +GM V +G F
Sbjct: 301 KADRAGVLAGHD----NRVSCL--GVTDDGMAVATGSWDSF 335
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 9/131 (6%)
Query: 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI 92
+ G + S+ + V+ + D S +L+DV C +T + ++ +CF +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV----SLSLCSSKDCFISGSLDRTVLLW 148
S D + RL L ++ L + HD ++ S+S S ++G D +W
Sbjct: 243 TGSD---DATCRLFDLRADQELMTYS--HDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 149 DQRAEKCQGLL 159
D G+L
Sbjct: 298 DALKADRAGVL 308
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 1/125 (0%)
Query: 28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
+ + + + F SY+ T S D+ ++++D + T + V+ FT+
Sbjct: 658 LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNK 717
Query: 88 PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLL 147
++ ++ + D L+L L+ + GH + V + S S D T+ L
Sbjct: 718 SNHLLLATGSN-DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 776
Query: 148 WDQRA 152
WD R+
Sbjct: 777 WDVRS 781
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 45/172 (26%)
Query: 21 LQSMEVGMSFRDYNGRISSMD---FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY 77
L +++ + D G +S + F S +TASDD++IR+++ T C + K
Sbjct: 873 LWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE-TKKVCKNSAIVLKQ 931
Query: 78 GVDLV--------------------------------------CFTSHPTTVIYSSKNGW 99
+D+V C + H V + ++G
Sbjct: 932 EIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG- 990
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR 151
+++++ L +N+ GH V + + IS S D + +W+ +
Sbjct: 991 --AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ 1040
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 29/165 (17%)
Query: 98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG 157
G D++L++ + L K H D V+ + S + S D+ V +WD
Sbjct: 641 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS------- 693
Query: 158 LLRVQGRPAAAYDDQG--------------LVFAVAFGG-YIRMFDARKYEKGPFDIFSV 202
G+ YD+ L+ A +++++D + E ++
Sbjct: 694 ---ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN----TM 746
Query: 203 GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK 247
G + N +FS D L+ + +G + + D + NVK
Sbjct: 747 FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK 791
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 21 LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY 77
L E + + ++ F L + S D ++RL+DV +A K+IN K++
Sbjct: 737 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF 793
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 1/125 (0%)
Query: 28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
+ + + + F SY+ T S D+ ++++D + T + V+ FT+
Sbjct: 651 LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNK 710
Query: 88 PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLL 147
++ ++ + D L+L L+ + GH + V + S S D T+ L
Sbjct: 711 SNHLLLATGSN-DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769
Query: 148 WDQRA 152
WD R+
Sbjct: 770 WDVRS 774
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 45/172 (26%)
Query: 21 LQSMEVGMSFRDYNGRISSMD---FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY 77
L +++ + D G +S + F S +TASDD++IR+++ T C + K
Sbjct: 866 LWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE-TKKVCKNSAIVLKQ 924
Query: 78 GVDLV--------------------------------------CFTSHPTTVIYSSKNGW 99
+D+V C + H V + ++G
Sbjct: 925 EIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG- 983
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR 151
+++++ L +N+ GH V + + IS S D + +W+ +
Sbjct: 984 --AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ 1033
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 29/165 (17%)
Query: 98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG 157
G D++L++ + L K H D V+ + S + S D+ V +WD
Sbjct: 634 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS------- 686
Query: 158 LLRVQGRPAAAYDDQG--------------LVFAVAFGG-YIRMFDARKYEKGPFDIFSV 202
G+ YD+ L+ A +++++D + E ++
Sbjct: 687 ---ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN----TM 739
Query: 203 GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK 247
G + N +FS D L+ + +G + + D + NVK
Sbjct: 740 FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK 784
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 21 LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY 77
L E + + ++ F L + S D ++RL+DV +A K+IN K++
Sbjct: 730 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF 786
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 49 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFT---SHPTTVIYSSKNGWDESLRL 105
L+ + ++ ++D+ A T I ++ C+ S + V +S + D ++ +
Sbjct: 112 LIVGGEASTLSIWDLAAPT--PRIKAELTSSAPACYALAISPDSKVCFSCCS--DGNIAV 167
Query: 106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 165
LH+ +R F+GH D + + + +G LD TV WD R +GR
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR----------EGRQ 217
Query: 166 AAAYDDQGLVFAVAF 180
+D +F++ +
Sbjct: 218 LQQHDFTSQIFSLGY 232
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 19/173 (10%)
Query: 111 NKYLRYFK---GHHDRVVSLSLCSSK----DCFISGSLDRTVLLWDQRAEKCQGLLRVQG 163
N+Y FK H D + S++ ++K + ++GSLD V +W R E+ ++G
Sbjct: 19 NQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEG 78
Query: 164 RPAAAYD-DQGLVFAVA----FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG 218
D +A +IR++D ++ I S+ DA + FS D
Sbjct: 79 HQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ----IKSIDAGPVDAWTLAFSPDS 134
Query: 219 RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRV 271
+ + T G +++ G + + + L ++SP+G ++ SG +
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKEYSLDTR---GKFILSIAYSPDGKYLASGAI 184
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCF 84
I S+ F S LVTASDD I++YDV A T++ V V F
Sbjct: 209 IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 256
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 60/146 (41%), Gaps = 12/146 (8%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
I S+ + YL + + D I ++D+ L T+ + + F+ ++ +S
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
+G+ +++ + GH V++++ C F+S S D++V +WD C
Sbjct: 227 DGY---IKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV 283
Query: 157 GLLRVQGRPAAAYDDQGLVFAVAFGG 182
+D Q V+ V + G
Sbjct: 284 HTF---------FDHQDQVWGVKYNG 300
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 22/161 (13%)
Query: 117 FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVF 176
+GH VVS+ + + S SLD + LWD K +++ A D L F
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK-----QIKSIDAGPVDAWTLAF 130
Query: 177 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANV---------VKFSNDGRLMLLTTME 227
+ + A G +IF V + ++ + +S DG+ + ++
Sbjct: 131 SPD-----SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAID 185
Query: 228 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS 268
G I++ D G LL T + S +FSP+ +++
Sbjct: 186 GIINIFDIATGKLLHTLEGHAMPIRSL---TFSPDSQLLVT 223
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 28 MSFRDYNGRISSMDFHKSSSYLVT---ASDDESIRLYDVTAATCLKTINSKKYGVDLVCF 84
+F + G + ++ + S ++ + D IR+++V + CL +++ V + +
Sbjct: 281 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILW 339
Query: 85 TSHPTTVIYSSKNGWDES-LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
+ H +I S +G+ ++ L + + KGH RV+SL++ S + D
Sbjct: 340 SPHYKELI--SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 397
Query: 144 TVLLW 148
T+ LW
Sbjct: 398 TLRLW 402
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 73/196 (37%), Gaps = 22/196 (11%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
ISS+ + K +YL + ++L+DV L+ + S V + + S+ + S
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSG 220
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
+ +R+ H + GH V L SG D V +W A
Sbjct: 221 HIHHHDVRVAEHH----VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS-APGEG 275
Query: 157 GLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN 216
G + +Q QG V AVA+ + ++ + GG SD + ++ N
Sbjct: 276 GWVPLQ----TFTQHQGAVKAVAWCPWQS------------NVLATGGGTSDRH-IRIWN 318
Query: 217 DGRLMLLTTMEGHIHV 232
L+ ++ H V
Sbjct: 319 VCSGACLSAVDAHSQV 334
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 28 MSFRDYNGRISSMDFHKSSSYLVT---ASDDESIRLYDVTAATCLKTINSKKYGVDLVCF 84
+F + G + ++ + S ++ + D IR+++V + CL +++ V + +
Sbjct: 270 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILW 328
Query: 85 TSHPTTVIYSSKNGWDES-LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
+ H +I S +G+ ++ L + + KGH RV+SL++ S + D
Sbjct: 329 SPHYKELI--SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 386
Query: 144 TVLLW 148
T+ LW
Sbjct: 387 TLRLW 391
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 73/196 (37%), Gaps = 22/196 (11%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
ISS+ + K +YL + ++L+DV L+ + S V + + S+ + S
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSG 209
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
+ +R+ H + GH V L SG D V +W A
Sbjct: 210 HIHHHDVRVAEHH----VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS-APGEG 264
Query: 157 GLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN 216
G + +Q QG V AVA+ + ++ + GG SD + ++ N
Sbjct: 265 GWVPLQ----TFTQHQGAVKAVAWCPWQS------------NVLATGGGTSDRH-IRIWN 307
Query: 217 DGRLMLLTTMEGHIHV 232
L+ ++ H V
Sbjct: 308 VCSGACLSAVDAHSQV 323
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 59/152 (38%), Gaps = 42/152 (27%)
Query: 42 FHKSSSYLVTASDDESIRLYDVTAATC------------------------------LKT 71
F S +T+SDD++IRL++ T C L+
Sbjct: 896 FSPDGSSFLTSSDDQTIRLWE-TKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQL 954
Query: 72 INSKKYGVDLV--------CFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDR 123
IN + +D + C + H + + +NG ++ +L L +N+ + H
Sbjct: 955 INGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENG---AIEILELVNNRIFQSRFQHKKT 1011
Query: 124 VVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC 155
V + + + IS S D + +W+ + +KC
Sbjct: 1012 VWHIQFTADEKTLISSSDDAEIQVWNWQLDKC 1043
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL 81
+ ++ F L + S D +++L+D T+A K+IN K++ ++L
Sbjct: 748 HTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNL 796
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVT---ASDDESIRLYDVTAATCLKTINSKKYGVDLVCFT 85
+F + G + ++ + S ++ + D IR+++V + CL +++ V + ++
Sbjct: 191 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWS 249
Query: 86 SHPTTVIYSSKNGWDES-LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT 144
H +I S +G+ ++ L + + KGH RV+SL++ S + D T
Sbjct: 250 PHYKELI--SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 307
Query: 145 VLLW 148
+ LW
Sbjct: 308 LRLW 311
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 73/196 (37%), Gaps = 22/196 (11%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
ISS+ + K +YL + ++L+DV L+ + S V + + S+ + S
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSG 129
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
+ +R+ H + GH V L SG D V +W A
Sbjct: 130 HIHHHDVRVAEHH----VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS-APGEG 184
Query: 157 GLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN 216
G + +Q QG V AVA+ + ++ + GG SD + ++ N
Sbjct: 185 GWVPLQ----TFTQHQGAVKAVAWCPWQS------------NVLATGGGTSDRH-IRIWN 227
Query: 217 DGRLMLLTTMEGHIHV 232
L+ ++ H V
Sbjct: 228 VCSGACLSAVDAHSQV 243
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 49 LVTASDDESIRLYDVTAATCLKTINSKKYG----VDLVCFTSHPTTVIYSSKNGWDESLR 104
++ ASD ++ L+++ L KY V V S T + SK D ++
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK---DICIK 152
Query: 105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEK 154
+ L L ++ H +V ++ KD F+S S D +LLWD R K
Sbjct: 153 VWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK 203
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.9 bits (76), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 21 LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV--TAATCLKTINSKKYG 78
++ +EV S D G +S ++L+ S +R ++V + T K
Sbjct: 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGP 88
Query: 79 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHD---RVVSLSLCSSKDC 135
V VC++ + V +S D++ ++ L N+ ++ HD + + + C
Sbjct: 89 VLDVCWSDDGSKVFTASC---DKTAKMWDLSSNQAIQI--AQHDAPVKTIHWIKAPNYSC 143
Query: 136 FISGSLDRTVLLWDQRAEKCQGLLRVQGR 164
++GS D+T+ WD R+ +L++ R
Sbjct: 144 VMTGSWDKTLKFWDTRSSNPMMVLQLPER 172
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 27/78 (34%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
++ + FH L T D +D A T LKT + CF + Y+S
Sbjct: 276 VNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASS 335
Query: 97 NGWDESLRLLSLHDNKYL 114
W + + Y+
Sbjct: 336 YDWSKGHEFYNPQKKNYI 353
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 80/201 (39%), Gaps = 24/201 (11%)
Query: 47 SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 106
S + + S D ++RL+ + + + ++ VC+ S +++ K+ + L
Sbjct: 30 SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLF 89
Query: 107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA 166
+ L GH V SLS ISGS D+T +W + + + +Q A
Sbjct: 90 ATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSL----VYNLQAHNA 143
Query: 167 AAYDDQGLVFA------VAFGGYIRMFDARKYEKG----PFDIFSVGGDISDANVVKFSN 216
+ +D + + F+ + I+++ K K D+ + D + + SN
Sbjct: 144 SVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSN 203
Query: 217 DGRLML--------LTTMEGH 229
DG + L L T EGH
Sbjct: 204 DGLIKLVDXHTGDVLRTYEGH 224
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS 74
+ G I S+D + Y VT S D SI+L+DV+ C+ T S
Sbjct: 73 HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKS 114
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 72/173 (41%), Gaps = 19/173 (10%)
Query: 111 NKYLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDRTVLLWD-----------QRAEKCQGL 158
+K + GH V+ ++ D I SGS D TV++W+ + +G
Sbjct: 71 DKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH 130
Query: 159 LRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANV--VKFSN 216
+ G A Q ++ + I ++D + ++G D+ + V +S
Sbjct: 131 TKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAA----VLTLGPDVHPDTIYSVDWSR 186
Query: 217 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 269
DG L+ + + + V++ +GT+++ + +P + A F EG + +G
Sbjct: 187 DGALICTSCRDKRVRVIEPRKGTVVAEKD-RPHEGTRPVHAVFVSEGKILTTG 238
>pdb|3P1Y|A Chain A, Crystal Structure Of The Chimeric Archaeoglobus Fulgidus
Rna Splicing Endonuclease With The Broadest Substrate
Specificity
pdb|3P1Y|B Chain B, Crystal Structure Of The Chimeric Archaeoglobus Fulgidus
Rna Splicing Endonuclease With The Broadest Substrate
Specificity
pdb|3P1Y|C Chain C, Crystal Structure Of The Chimeric Archaeoglobus Fulgidus
Rna Splicing Endonuclease With The Broadest Substrate
Specificity
pdb|3P1Y|D Chain D, Crystal Structure Of The Chimeric Archaeoglobus Fulgidus
Rna Splicing Endonuclease With The Broadest Substrate
Specificity
Length = 315
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK----YGVDLV 82
G FR Y ++ S+D S YLV +D IRL D+ A L K+ YG + +
Sbjct: 250 GSEFRVYR-KVESVDDLPHSEYLVDIADSREIRLIDLARAVRLAQNVRKRMVFAYGKNYL 308
Query: 83 CF 84
CF
Sbjct: 309 CF 310
>pdb|1RLV|A Chain A, Crystal Structure Of A Dimeric Archaeal Splicing
Endonuclease
pdb|1RLV|B Chain B, Crystal Structure Of A Dimeric Archaeal Splicing
Endonuclease
pdb|1R0V|A Chain A, Structure Determination Of The Dimeric Endonuclease In A
Pseudo-face- Centerd P21212 Space Group
pdb|1R0V|B Chain B, Structure Determination Of The Dimeric Endonuclease In A
Pseudo-face- Centerd P21212 Space Group
pdb|1R0V|C Chain C, Structure Determination Of The Dimeric Endonuclease In A
Pseudo-face- Centerd P21212 Space Group
pdb|1R0V|D Chain D, Structure Determination Of The Dimeric Endonuclease In A
Pseudo-face- Centerd P21212 Space Group
pdb|1R11|A Chain A, Structure Determination Of The Dimeric Endonuclease In A
Pseudo-Face- Centerd P21 Space Group
pdb|1R11|B Chain B, Structure Determination Of The Dimeric Endonuclease In A
Pseudo-Face- Centerd P21 Space Group
Length = 305
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK----YGVDLV 82
G FR Y ++ S+D S YLV +D IRL D+ A L K+ YG + +
Sbjct: 240 GSEFRVYR-KVESVDDLPHSEYLVDIADSREIRLIDLARAVRLAQNVRKRMVFAYGKNYL 298
Query: 83 CF 84
CF
Sbjct: 299 CF 300
>pdb|2GJW|A Chain A, Rna Recognition And Cleavage By An Splicing Endonuclease
pdb|2GJW|B Chain B, Rna Recognition And Cleavage By An Splicing Endonuclease
pdb|2GJW|C Chain C, Rna Recognition And Cleavage By An Splicing Endonuclease
pdb|2GJW|D Chain D, Rna Recognition And Cleavage By An Splicing Endonuclease
Length = 313
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK----YGVDLV 82
G FR Y ++ S+D S YLV +D IRL D+ A L K+ YG + +
Sbjct: 248 GSEFRVYR-KVESVDDLPHSEYLVDIADSREIRLIDLARAVRLAQNVRKRMVFAYGKNYL 306
Query: 83 CF 84
CF
Sbjct: 307 CF 308
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 93/235 (39%), Gaps = 30/235 (12%)
Query: 46 SSYLVTASDDESIRLYDVTAATCL-KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104
S +L++ASDD +I L+D++A K +++K FT H V S + ESL
Sbjct: 190 SGHLLSASDDHTICLWDISAVPKEGKVVDAK------TIFTGHTAVVEDVSWHLLHESLF 243
Query: 105 LLSLHDNKYLRY-------------FKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQ 150
D K + + H V LS S+ +GS D+TV LWD
Sbjct: 244 GSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 303
Query: 151 RAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDAN 210
R L+++ ++ D+ +F V + + A +++ + I +
Sbjct: 304 RN------LKLKLHSFESHKDE--IFQVQWSPHNETILASSGTDRRLNVWDLSK-IGEEQ 354
Query: 211 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF 265
+ + DG LL GH + F + + VS ++ ++ E ++
Sbjct: 355 SPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIY 409
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 12/120 (10%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
++S+ + S+L + + +YDV + T L+T+ + V + + H + S+
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH--VLSSGSR 194
Query: 97 NGWDESLRLLSLHD----NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA 152
+G + HD N + +GH V L+ S SG D V +WD R+
Sbjct: 195 SG------AIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS 248
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 46 SSYLVTASDDESIRLYDVTAATC-LKTINSKKYGVDLVCFTSHPTTV-------IYSSKN 97
+ YL++ASDD +I L+D+ A + I++K FT H V ++ S
Sbjct: 198 NGYLLSASDDHTICLWDINATPKEHRVIDAKN------IFTGHTAVVEDVAWHLLHESLF 251
Query: 98 GW---DESLRLLSLHDN---KYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQ 150
G D+ L + +N K H V LS S+ +GS D+TV LWD
Sbjct: 252 GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 311
Query: 151 RAEKCQ 156
R K +
Sbjct: 312 RNLKLK 317
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 21/119 (17%)
Query: 48 YLVTASDDESIRLYDVTAATC-LKTINSKKYGVDLVCFTSHPTTV-------IYSSKNGW 99
YL++ASDD +I L+D+ A + I++K FT H V ++ S G
Sbjct: 198 YLLSASDDHTICLWDINATPKEHRVIDAKN------IFTGHTAVVEDVAWHLLHESLFGS 251
Query: 100 ---DESLRLLSLHDN---KYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQR 151
D+ L + +N K H V LS S+ +GS D+TV LWD R
Sbjct: 252 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 310
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 21/119 (17%)
Query: 48 YLVTASDDESIRLYDVTAATC-LKTINSKKYGVDLVCFTSHPTTV-------IYSSKNGW 99
YL++ASDD +I L+D+ A + I++K FT H V ++ S G
Sbjct: 196 YLLSASDDHTICLWDINATPKEHRVIDAKN------IFTGHTAVVEDVAWHLLHESLFGS 249
Query: 100 ---DESLRLLSLHDN---KYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQR 151
D+ L + +N K H V LS S+ +GS D+TV LWD R
Sbjct: 250 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 308
>pdb|4I37|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant R402g
Length = 536
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Query: 76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135
KYG L CF H + ++ + D L + K + + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 136 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 178
+G + T L++Q +GL G+P + G +
Sbjct: 399 QAAGMIHSTAGLYNQFI---KGLDSFSGKPRGSGPPAGPALPI 438
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 4 SQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV 63
S S E+K L+ + ++ E+ D+NG + S+ ++ + + L +A DD +RL+
Sbjct: 280 SDSNTEEKAELQSNLQV----ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKA 335
Query: 64 TAAT---CLKTINSKK 76
T + C+ I +++
Sbjct: 336 TYSNEFKCMSVITAQQ 351
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 20/91 (21%)
Query: 117 FKGHHDRVVSLSLCSSK--DCFISGSLDRTVLLW--DQRAEKCQGLLRVQGRPAAAYDDQ 172
++ H +V++ S + S S D+TV LW D E+C G R + D +
Sbjct: 53 WRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG--RRWNKLCTLNDSK 110
Query: 173 GLVFAVAFG--------------GYIRMFDA 189
G +++V F G +R++DA
Sbjct: 111 GSLYSVKFAPAHLGLKLACLGNDGILRLYDA 141
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 4 SQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV 63
S S E+K L+ + ++ E+ D+NG + S+ ++ + + L +A DD +RL+
Sbjct: 278 SDSNTEEKAELQSNLQV----ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKA 333
Query: 64 TAAT---CLKTINSKK 76
T + C+ I +++
Sbjct: 334 TYSNEFKCMSVITAQQ 349
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 20/91 (21%)
Query: 117 FKGHHDRVVSLSLCSSK--DCFISGSLDRTVLLW--DQRAEKCQGLLRVQGRPAAAYDDQ 172
++ H +V++ S + S S D+TV LW D E+C G R + D +
Sbjct: 51 WRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG--RRWNKLCTLNDSK 108
Query: 173 GLVFAVAFG--------------GYIRMFDA 189
G +++V F G +R++DA
Sbjct: 109 GSLYSVKFAPAHLGLKLACLGNDGILRLYDA 139
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
D L++ S+ D R GH V +++ +S SLD T+ LW+
Sbjct: 160 DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
D L++ S+ D R GH V +++ +S SLD T+ LW+
Sbjct: 157 DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 89/234 (38%), Gaps = 28/234 (11%)
Query: 46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 105
S +L++ASDD ++ L+D+ A I K FT H V + + ESL
Sbjct: 192 SGHLLSASDDHTVCLWDINAGPKEGKIVDAK-----AIFTGHSAVVEDVAWHLLHESLFG 246
Query: 106 LSLHDNKYLRY-------------FKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQR 151
D K + + H V LS S+ +GS D+TV LWD R
Sbjct: 247 SVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
Query: 152 AEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANV 211
L+++ ++ D+ +F V + + A +++ + I +
Sbjct: 307 N------LKLKLHTFESHKDE--IFQVHWSPHNETILASSGTDRRLNVWDLSK-IGEEQS 357
Query: 212 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF 265
+ + DG LL GH + F + + VS ++ ++ E ++
Sbjct: 358 AEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIY 411
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 8/121 (6%)
Query: 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDV-----TAATCLKTINSKKYGVDLVCFTSH 87
+NG+++ + F +L+T D +RL++ T K N+ K G+
Sbjct: 244 HNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGC 303
Query: 88 PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLL 147
+ ++ + ++ + +++ + + KGH+ V S+ SGS D +L
Sbjct: 304 SSEFVFVP---YGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA 360
Query: 148 W 148
W
Sbjct: 361 W 361
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 4 SQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV 63
S S E+K L+ + ++ E+ D+NG + S+ ++ + + L +A DD +RL+
Sbjct: 280 SDSNTEEKAELQSNLQV----ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKA 335
Query: 64 TAAT---CLKTINSKK 76
T + C I +++
Sbjct: 336 TYSNEFKCXSVITAQQ 351
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 20/91 (21%)
Query: 117 FKGHHDRVVSLSLCSSK--DCFISGSLDRTVLLW--DQRAEKCQGLLRVQGRPAAAYDDQ 172
++ H +V++ S + S S D+TV LW D E+C G R + D +
Sbjct: 53 WRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG--RRWNKLCTLNDSK 110
Query: 173 GLVFAVAFG--------------GYIRMFDA 189
G +++V F G +R++DA
Sbjct: 111 GSLYSVKFAPAHLGLKLACLGNDGILRLYDA 141
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 19/120 (15%)
Query: 46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV-------IYSSKNG 98
S +L++ASDD ++ L+D+ A I K FT H V ++ S G
Sbjct: 192 SGHLLSASDDHTVCLWDINAGPKEGKIVDAK-----AIFTGHSAVVEDVAWHLLHESLFG 246
Query: 99 W---DESLRLLSLHDN---KYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQR 151
D+ L + N K H V LS S+ +GS D+TV LWD R
Sbjct: 247 SVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
>pdb|2ABJ|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|D Chain D, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|G Chain G, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|J Chain J, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate
Length = 366
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 63 VTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD----ESLRLLSLH 109
VT AT LK V FT H TV +SS+ GW+ + L+ LSLH
Sbjct: 12 VTPATILKEKPDPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLH 62
>pdb|2YH3|A Chain A, The Structure Of Bamb From E. Coli
Length = 379
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 141 LDRTVLLWDQRAEKCQG------LLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDAR---- 190
+++ ++W QR + G L V P G+VFA+A+ G + D R
Sbjct: 200 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV---NGVVFALAYNGNLTALDLRSGQI 256
Query: 191 --KYEKGPFDIFSVGGD---ISDAN--VVKFSNDGRLMLLT 224
K E G + F V G+ + D N V+ + DG + L T
Sbjct: 257 MWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWT 297
>pdb|2COG|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COG|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COI|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COI|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|A Chain A, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|B Chain B, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
Length = 386
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 63 VTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD----ESLRLLSLH 109
VT AT LK V FT H TV +SS+ GW+ + L+ LSLH
Sbjct: 32 VTPATILKEKPDPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLH 82
>pdb|3P1L|A Chain A, Crystal Structure Of Escherichia Coli Bamb, A Lipoprotein
Component Of The Beta-Barrel Assembly Machinery Complex,
Native Crystals
Length = 393
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 141 LDRTVLLWDQRAEKCQG------LLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDAR---- 190
+++ ++W QR + G L V P G+VFA+A+ G + D R
Sbjct: 222 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV---NGVVFALAYNGNLTALDLRSGQI 278
Query: 191 --KYEKGPFDIFSVGGD---ISDAN--VVKFSNDGRLMLLT 224
K E G + F V G+ + D N V+ + DG + L T
Sbjct: 279 MWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWT 319
>pdb|3Q54|A Chain A, Crystal Structure Of Escherichia Coli Bamb
Length = 368
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 141 LDRTVLLWDQRAEKCQG------LLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDAR---- 190
+++ ++W QR + G L V P G+VFA+A+ G + D R
Sbjct: 197 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV---NGVVFALAYNGNLTALDLRSGQI 253
Query: 191 --KYEKGPFDIFSVGGD---ISDAN--VVKFSNDGRLMLLT 224
K E G + F V G+ + D N V+ + DG + L T
Sbjct: 254 MWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWT 294
>pdb|3PRW|A Chain A, Crystal Structure Of The Lipoprotein Bamb
Length = 377
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 141 LDRTVLLWDQRAEKCQG------LLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDAR---- 190
+++ ++W QR + G L V P G+VFA+A+ G + D R
Sbjct: 206 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV---NGVVFALAYNGNLTALDLRSGQI 262
Query: 191 --KYEKGPFDIFSVGGD---ISDAN--VVKFSNDGRLMLLT 224
K E G + F V G+ + D N V+ + DG + L T
Sbjct: 263 MWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWT 303
>pdb|3Q7O|A Chain A, The Crystal Structure Of Bamb From The Bam Complex In
Spacegroup P213
Length = 376
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 141 LDRTVLLWDQRAEKCQG------LLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDAR---- 190
+++ ++W QR + G L V P G+VFA+A+ G + D R
Sbjct: 205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV---NGVVFALAYNGNLTALDLRSGQI 261
Query: 191 --KYEKGPFDIFSVGGD---ISDAN--VVKFSNDGRLMLLT 224
K E G + F V G+ + D N V+ + DG + L T
Sbjct: 262 MWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWT 302
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 24/116 (20%)
Query: 136 FISGSLDRTVLLWD--QRAEKCQGLLRVQGRP---------AAAYDDQGLVFAVAF-GGY 183
++GS D TV +WD Q+ + + VQG AY+ + V + G
Sbjct: 132 IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD 191
Query: 184 IRMFDAR----KYEKGPFD-IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234
I++FD R ++E + + S+ D D ++ K ++ T++EG HV D
Sbjct: 192 IKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNK-------LVATSLEGKFHVFD 240
>pdb|4I2S|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant I404m
Length = 536
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135
KYG L CF H + ++ + D L + K + + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 136 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 178
+ + T L++Q +GL G+P + G +
Sbjct: 399 QAARMMHSTAGLYNQFI---KGLDSFSGKPRGSGPPAGPALPI 438
>pdb|4I7I|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant L14r
Length = 536
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135
KYG L CF H + ++ + D L + K + + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 136 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 178
+ + T L++Q +GL G+P + G +
Sbjct: 399 QAARMIHSTAGLYNQFI---KGLDSFSGKPRGSGPPAGPALPI 438
>pdb|4I0Y|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant C36r
Length = 536
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135
KYG L CF H + ++ + D L + K + + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 136 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 178
+ + T L++Q +GL G+P + G +
Sbjct: 399 QAARMIHSTAGLYNQFI---KGLDSFSGKPRGSGPPAGPALPI 438
>pdb|4I96|A Chain A, Crystal Structure Of The N-terminal Two Domains Of The
Skeletal Muscle Ryanodine Receptor (rabbit Ryr1)
Residues 217-536
Length = 320
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135
KYG L CF H + ++ + D L + K + + +GH D + L+ C ++
Sbjct: 124 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 182
Query: 136 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 178
+ + T L++Q +GL G+P + G +
Sbjct: 183 QAARMIHSTAGLYNQF---IKGLDSFSGKPRGSGPPAGPALPI 222
>pdb|4I8M|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant V219i
Length = 536
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135
KYG L CF H + ++ + D L + K + + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 136 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 178
+ + T L++Q +GL G+P + G +
Sbjct: 399 QAARMIHSTAGLYNQFI---KGLDSFSGKPRGSGPPAGPALPI 438
>pdb|4I1E|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant G249r
Length = 536
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135
KYG L CF H + ++ + D L + K + + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 136 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 178
+ + T L++Q +GL G+P + G +
Sbjct: 399 QAARMIHSTAGLYNQFI---KGLDSFSGKPRGSGPPAGPALPI 438
>pdb|4I3N|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant D61n
Length = 536
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135
KYG L CF H + ++ + D L + K + + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 136 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 178
+ + T L++Q +GL G+P + G +
Sbjct: 399 QAARMIHSTAGLYNQFI---KGLDSFSGKPRGSGPPAGPALPI 438
>pdb|2XOA|A Chain A, Crystal Structure Of The N-Terminal Three Domains Of The
Skeletal Muscle Ryanodine Receptor (Ryr1)
Length = 559
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135
KYG L CF H + ++ + D L + K + + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 136 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 178
+ + T L++Q +GL G+P + G +
Sbjct: 399 QAARMIHSTAGLYNQFI---KGLDSFSGKPRGSGPPAGPALPI 438
>pdb|4I6I|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-559) Disease Mutant R45c
Length = 559
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135
KYG L CF H + ++ + D L + K + + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 136 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 178
+ + T L++Q +GL G+P + G +
Sbjct: 399 QAARMIHSTAGLYNQFI---KGLDSFSGKPRGSGPPAGPALPI 438
>pdb|4DGW|A Chain A, Crystal Structure Of The Sf3a Splicing Factor Complex Of
U2 Snrnp
Length = 402
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 70/186 (37%), Gaps = 23/186 (12%)
Query: 20 ILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT-------- 71
ILQ E+ + RDY + + F+K + T DD+ + ++ K
Sbjct: 86 ILQQHEINIFLRDYQEKQQT--FNKINRPEETQEDDKDLPNFERKLQQLEKELKNEDENF 143
Query: 72 ---INSKKYGVDLVCFTSHPT--TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVS 126
INSKK L +S P+ T I S + D L + D +Y Y + +
Sbjct: 144 ELDINSKKDKYALFSSSSDPSRRTNILSDR-ARDLDLNEIFTRDEQYGEYXELEQFHSLW 202
Query: 127 LSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRM 186
L++ DC + LD L D + LL P +D+ F + Y+
Sbjct: 203 LNVIKRGDCSLLQFLDILELFLDDE----KYLL---TPPXDRKNDRYXAFLLKLSKYVET 255
Query: 187 FDARKY 192
F + Y
Sbjct: 256 FFFKSY 261
>pdb|3GB0|A Chain A, Crystal Structure Of Aminopeptidase Pept (Np_980509.1)
From Bacillus Cereus Atcc 10987 At 2.04 A Resolution
Length = 373
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 54 DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104
+D++ + A + T+ + K GVD + FTSH TV+ NG S++
Sbjct: 45 EDDTXAVTGHGAGNLICTLPATKDGVDTIYFTSHXDTVVPG--NGIKPSIK 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,989,969
Number of Sequences: 62578
Number of extensions: 317513
Number of successful extensions: 1316
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 831
Number of HSP's gapped (non-prelim): 314
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)