Query 023822
Match_columns 276
No_of_seqs 698 out of 1127
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 06:54:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 1.2E-48 2.6E-53 293.3 18.0 243 23-275 206-454 (459)
2 KOG0271 Notchless-like WD40 re 100.0 1.1E-47 2.4E-52 285.2 22.3 243 27-275 108-433 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-46 3.4E-51 281.9 18.8 242 24-275 165-412 (459)
4 KOG0286 G-protein beta subunit 100.0 4.1E-44 8.8E-49 257.5 27.9 248 23-275 44-339 (343)
5 KOG0271 Notchless-like WD40 re 100.0 2.1E-45 4.5E-50 273.1 20.9 242 23-275 146-475 (480)
6 KOG0279 G protein beta subunit 100.0 1E-41 2.2E-46 243.7 25.5 248 19-275 48-307 (315)
7 KOG0279 G protein beta subunit 100.0 1.5E-40 3.3E-45 237.7 26.1 240 23-273 4-255 (315)
8 KOG0263 Transcription initiati 100.0 2.2E-41 4.8E-46 272.0 22.0 232 34-275 378-643 (707)
9 KOG0315 G-protein beta subunit 100.0 1.1E-39 2.4E-44 229.8 25.0 245 23-275 29-282 (311)
10 KOG1446 Histone H3 (Lys4) meth 100.0 7.9E-39 1.7E-43 232.7 29.9 253 22-275 2-256 (311)
11 KOG0263 Transcription initiati 100.0 2.8E-40 6.1E-45 265.7 22.6 234 26-269 443-703 (707)
12 KOG0273 Beta-transducin family 100.0 2.1E-39 4.5E-44 246.9 25.8 239 25-275 267-517 (524)
13 KOG0284 Polyadenylation factor 100.0 1.4E-41 3.1E-46 254.4 13.4 242 24-275 128-374 (464)
14 KOG0316 Conserved WD40 repeat- 100.0 7.8E-40 1.7E-44 229.0 19.8 240 26-275 9-251 (307)
15 KOG0285 Pleiotropic regulator 100.0 2.3E-39 4.9E-44 239.3 19.8 242 22-275 139-383 (460)
16 KOG0295 WD40 repeat-containing 100.0 2E-39 4.4E-44 239.6 19.3 241 25-275 141-400 (406)
17 KOG0265 U5 snRNP-specific prot 100.0 1.3E-38 2.9E-43 229.9 22.8 242 24-275 37-332 (338)
18 KOG0273 Beta-transducin family 100.0 1.2E-38 2.6E-43 242.8 23.4 230 34-275 235-476 (524)
19 KOG0295 WD40 repeat-containing 100.0 6.5E-39 1.4E-43 237.0 18.8 246 20-275 94-358 (406)
20 KOG0318 WD40 repeat stress pro 100.0 3.6E-37 7.7E-42 237.8 28.2 247 22-275 178-554 (603)
21 KOG0315 G-protein beta subunit 100.0 9.4E-38 2E-42 220.2 22.8 219 47-275 11-239 (311)
22 KOG0284 Polyadenylation factor 100.0 8.9E-40 1.9E-44 244.8 13.2 232 34-275 96-331 (464)
23 KOG0282 mRNA splicing factor [ 100.0 2.9E-39 6.3E-44 246.7 15.3 245 24-275 204-499 (503)
24 KOG0266 WD40 repeat-containing 100.0 4E-37 8.7E-42 251.2 27.4 242 26-275 150-403 (456)
25 KOG0266 WD40 repeat-containing 100.0 4.2E-37 9E-42 251.1 25.9 236 26-271 195-442 (456)
26 KOG0645 WD40 repeat protein [G 100.0 5.5E-36 1.2E-40 213.6 27.0 238 24-274 4-254 (312)
27 cd00200 WD40 WD40 domain, foun 100.0 5.6E-36 1.2E-40 232.1 29.6 238 28-275 3-243 (289)
28 KOG0643 Translation initiation 100.0 1.7E-36 3.8E-41 215.8 23.8 240 29-275 5-311 (327)
29 KOG0286 G-protein beta subunit 100.0 1.1E-36 2.4E-41 219.3 22.1 205 22-234 133-343 (343)
30 KOG0276 Vesicle coat complex C 100.0 5.9E-37 1.3E-41 241.2 21.3 241 25-275 4-251 (794)
31 KOG0296 Angio-associated migra 100.0 1.8E-35 3.9E-40 218.9 27.2 242 26-274 56-391 (399)
32 KOG0291 WD40-repeat-containing 100.0 3.4E-36 7.3E-41 241.4 25.0 243 22-275 295-544 (893)
33 KOG0291 WD40-repeat-containing 100.0 1.1E-35 2.4E-40 238.5 27.1 243 26-275 342-606 (893)
34 KOG0310 Conserved WD40 repeat- 100.0 1.7E-36 3.6E-41 231.9 21.4 243 25-276 59-304 (487)
35 KOG0293 WD40 repeat-containing 100.0 2.7E-36 5.9E-41 226.7 19.6 245 24-275 214-507 (519)
36 cd00200 WD40 WD40 domain, foun 100.0 1.6E-34 3.4E-39 224.0 30.2 240 26-275 43-285 (289)
37 KOG0283 WD40 repeat-containing 100.0 5.1E-36 1.1E-40 243.0 21.2 250 20-275 252-570 (712)
38 KOG0278 Serine/threonine kinas 100.0 6.9E-37 1.5E-41 216.1 13.9 239 25-275 50-291 (334)
39 PTZ00421 coronin; Provisional 100.0 5.8E-34 1.3E-38 232.1 30.6 227 29-262 70-314 (493)
40 KOG1407 WD40 repeat protein [F 100.0 2.3E-35 5E-40 209.4 19.3 237 28-275 14-255 (313)
41 KOG0292 Vesicle coat complex C 100.0 6.4E-35 1.4E-39 237.9 23.9 252 14-275 33-316 (1202)
42 PLN00181 protein SPA1-RELATED; 100.0 5.2E-34 1.1E-38 248.7 31.4 235 30-275 479-732 (793)
43 KOG0276 Vesicle coat complex C 100.0 5.4E-35 1.2E-39 230.2 21.6 242 24-275 45-293 (794)
44 KOG0285 Pleiotropic regulator 100.0 5.6E-35 1.2E-39 216.1 20.1 245 23-275 182-433 (460)
45 KOG0645 WD40 repeat protein [G 100.0 7E-34 1.5E-38 202.9 22.6 241 22-275 48-305 (312)
46 KOG0313 Microtubule binding pr 100.0 6.6E-34 1.4E-38 211.7 22.5 243 24-275 134-412 (423)
47 KOG0319 WD40-repeat-containing 100.0 6.8E-35 1.5E-39 233.2 18.5 237 29-275 360-613 (775)
48 KOG0318 WD40 repeat stress pro 100.0 6.1E-33 1.3E-37 214.5 27.1 249 22-275 47-344 (603)
49 KOG0294 WD40 repeat-containing 100.0 1.2E-33 2.6E-38 205.7 21.7 261 1-275 5-275 (362)
50 PLN00181 protein SPA1-RELATED; 100.0 1.1E-32 2.4E-37 240.5 31.8 239 33-275 531-787 (793)
51 KOG0281 Beta-TrCP (transducin 100.0 8.9E-35 1.9E-39 214.6 14.4 235 23-274 226-470 (499)
52 KOG0292 Vesicle coat complex C 100.0 4.3E-34 9.4E-39 233.1 19.4 241 29-275 4-274 (1202)
53 KOG0973 Histone transcription 100.0 1.6E-33 3.5E-38 234.1 22.8 242 25-275 60-349 (942)
54 KOG0281 Beta-TrCP (transducin 100.0 4.1E-35 8.9E-40 216.4 11.2 221 33-275 196-422 (499)
55 PTZ00420 coronin; Provisional 100.0 7.1E-32 1.5E-36 221.1 30.9 232 25-263 65-318 (568)
56 KOG0305 Anaphase promoting com 100.0 5.4E-33 1.2E-37 219.7 23.3 229 34-275 217-455 (484)
57 KOG0316 Conserved WD40 repeat- 100.0 7.9E-33 1.7E-37 194.0 20.8 237 24-272 49-291 (307)
58 KOG0277 Peroxisomal targeting 100.0 1.1E-33 2.4E-38 200.2 16.6 243 24-275 51-303 (311)
59 KOG0288 WD40 repeat protein Ti 100.0 1.2E-33 2.6E-38 212.4 15.8 254 15-275 200-455 (459)
60 KOG0289 mRNA splicing factor [ 100.0 1.3E-32 2.9E-37 208.0 20.9 230 35-273 220-454 (506)
61 KOG0306 WD40-repeat-containing 100.0 1.9E-32 4.1E-37 219.9 22.5 235 28-275 367-616 (888)
62 KOG0268 Sof1-like rRNA process 100.0 1.2E-33 2.7E-38 209.2 14.2 241 25-275 57-339 (433)
63 KOG0319 WD40-repeat-containing 100.0 2.9E-32 6.3E-37 218.3 22.5 243 22-275 311-571 (775)
64 KOG1407 WD40 repeat protein [F 100.0 2.6E-31 5.6E-36 188.9 24.3 238 23-273 53-294 (313)
65 KOG0640 mRNA cleavage stimulat 100.0 3.5E-32 7.6E-37 198.1 19.7 241 28-273 106-418 (430)
66 KOG0772 Uncharacterized conser 100.0 1.5E-32 3.1E-37 212.1 18.5 242 25-271 158-429 (641)
67 KOG0641 WD40 repeat protein [G 100.0 1.8E-30 4E-35 181.5 25.0 238 28-275 83-343 (350)
68 KOG0275 Conserved WD40 repeat- 100.0 2.7E-32 5.9E-37 200.1 16.6 237 32-274 211-460 (508)
69 KOG0275 Conserved WD40 repeat- 100.0 1.1E-32 2.3E-37 202.2 14.0 242 25-275 254-503 (508)
70 KOG0299 U3 snoRNP-associated p 100.0 2.9E-31 6.4E-36 202.0 21.0 231 31-270 199-444 (479)
71 PTZ00421 coronin; Provisional 100.0 4.3E-30 9.3E-35 209.6 28.6 232 35-275 21-284 (493)
72 KOG0282 mRNA splicing factor [ 100.0 3.6E-32 7.9E-37 208.1 15.1 204 23-234 247-503 (503)
73 KOG0647 mRNA export protein (c 100.0 1.4E-30 3E-35 188.8 21.0 230 32-270 25-312 (347)
74 PTZ00420 coronin; Provisional 100.0 1.4E-29 2.9E-34 207.8 29.2 216 52-275 50-287 (568)
75 KOG0289 mRNA splicing factor [ 100.0 2.1E-30 4.5E-35 196.3 22.4 242 24-274 251-499 (506)
76 KOG0308 Conserved WD40 repeat- 100.0 1.2E-31 2.7E-36 212.1 16.0 227 39-275 29-279 (735)
77 KOG0274 Cdc4 and related F-box 100.0 2.8E-30 6E-35 211.1 24.3 232 27-275 242-476 (537)
78 KOG0265 U5 snRNP-specific prot 100.0 4.5E-30 9.6E-35 186.0 20.3 203 25-234 81-336 (338)
79 KOG2096 WD40 repeat protein [G 100.0 6.8E-30 1.5E-34 186.7 21.1 207 27-236 79-308 (420)
80 KOG0296 Angio-associated migra 100.0 1.8E-29 4E-34 187.2 23.1 204 26-236 98-398 (399)
81 KOG1036 Mitotic spindle checkp 100.0 1.3E-29 2.8E-34 184.2 21.3 228 34-271 13-294 (323)
82 KOG0643 Translation initiation 100.0 1.5E-29 3.2E-34 180.7 21.2 211 25-236 43-317 (327)
83 KOG0646 WD40 repeat protein [G 100.0 7.6E-30 1.6E-34 194.7 20.1 224 34-263 81-331 (476)
84 KOG0306 WD40-repeat-containing 100.0 1.2E-29 2.6E-34 203.9 21.8 239 24-275 404-658 (888)
85 KOG0772 Uncharacterized conser 100.0 8.4E-30 1.8E-34 197.0 19.6 264 3-275 185-481 (641)
86 KOG0278 Serine/threonine kinas 100.0 3.1E-30 6.7E-35 182.6 15.1 201 32-241 98-302 (334)
87 KOG0299 U3 snoRNP-associated p 100.0 2E-29 4.4E-34 192.1 20.5 240 27-275 135-404 (479)
88 KOG0288 WD40 repeat protein Ti 100.0 9.6E-31 2.1E-35 196.8 12.5 239 27-275 168-411 (459)
89 KOG1446 Histone H3 (Lys4) meth 100.0 4.7E-28 1E-32 176.8 26.0 237 24-271 46-295 (311)
90 KOG0313 Microtubule binding pr 100.0 2.4E-29 5.3E-34 187.5 19.5 230 32-275 103-370 (423)
91 KOG0267 Microtubule severing p 100.0 5.5E-31 1.2E-35 210.7 9.4 236 28-273 22-260 (825)
92 KOG0264 Nucleosome remodeling 100.0 4.4E-29 9.6E-34 189.9 19.0 237 32-274 122-397 (422)
93 KOG1332 Vesicle coat complex C 100.0 2.3E-29 5E-34 177.5 16.2 241 30-275 7-280 (299)
94 KOG0310 Conserved WD40 repeat- 100.0 4.6E-29 9.9E-34 191.4 19.2 230 34-275 26-262 (487)
95 KOG0973 Histone transcription 100.0 7.6E-29 1.6E-33 206.6 21.8 239 32-276 11-307 (942)
96 KOG0293 WD40 repeat-containing 100.0 5.1E-29 1.1E-33 187.8 16.7 206 24-237 259-514 (519)
97 KOG0283 WD40 repeat-containing 100.0 1.5E-28 3.2E-33 200.0 19.6 204 24-237 359-577 (712)
98 KOG0277 Peroxisomal targeting 100.0 2.5E-29 5.5E-34 178.2 13.0 208 22-235 92-308 (311)
99 KOG0639 Transducin-like enhanc 100.0 3.6E-29 7.8E-34 193.2 14.9 228 34-273 465-696 (705)
100 KOG0300 WD40 repeat-containing 100.0 1.4E-28 2.9E-33 180.2 17.0 239 23-272 137-419 (481)
101 KOG2445 Nuclear pore complex c 100.0 1.1E-26 2.4E-31 169.1 26.2 241 31-275 10-312 (361)
102 KOG0274 Cdc4 and related F-box 100.0 6.6E-28 1.4E-32 197.2 21.7 225 33-275 207-435 (537)
103 KOG0640 mRNA cleavage stimulat 100.0 7.2E-29 1.6E-33 180.9 14.3 202 69-275 105-329 (430)
104 KOG0641 WD40 repeat protein [G 100.0 2.1E-26 4.6E-31 161.3 24.8 249 19-274 18-296 (350)
105 KOG0305 Anaphase promoting com 100.0 1.5E-27 3.2E-32 189.0 19.4 207 24-239 249-464 (484)
106 KOG0300 WD40 repeat-containing 100.0 1.3E-27 2.8E-32 175.1 16.9 246 22-275 178-470 (481)
107 KOG0301 Phospholipase A2-activ 100.0 2.8E-27 6E-32 188.8 19.8 242 14-275 37-282 (745)
108 KOG0294 WD40 repeat-containing 100.0 3.1E-26 6.6E-31 167.3 22.3 221 26-259 75-305 (362)
109 KOG0308 Conserved WD40 repeat- 100.0 8.5E-28 1.8E-32 190.5 14.7 206 26-238 65-287 (735)
110 KOG1274 WD40 repeat protein [G 100.0 3.9E-26 8.5E-31 187.5 24.4 238 32-275 11-256 (933)
111 KOG0269 WD40 repeat-containing 100.0 1.6E-27 3.4E-32 192.4 15.2 231 37-276 90-335 (839)
112 KOG0264 Nucleosome remodeling 100.0 8.1E-27 1.8E-31 177.7 18.1 211 23-236 166-404 (422)
113 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 9.2E-25 2E-29 171.1 30.0 240 25-275 22-273 (300)
114 KOG0302 Ribosome Assembly prot 100.0 1.9E-26 4.1E-31 172.1 19.1 242 28-274 145-432 (440)
115 KOG1273 WD40 repeat protein [G 100.0 2.8E-26 6.1E-31 167.7 19.0 231 37-275 26-316 (405)
116 KOG2055 WD40 repeat protein [G 100.0 7.4E-26 1.6E-30 173.0 21.8 239 34-275 213-506 (514)
117 KOG1274 WD40 repeat protein [G 100.0 9.7E-26 2.1E-30 185.2 23.8 227 33-273 55-292 (933)
118 KOG0301 Phospholipase A2-activ 99.9 2.9E-26 6.3E-31 183.0 19.3 238 22-275 2-243 (745)
119 KOG1539 WD repeat protein [Gen 99.9 4.8E-25 1E-29 179.5 26.4 246 22-273 190-639 (910)
120 KOG0269 WD40 repeat-containing 99.9 4.2E-27 9E-32 189.9 14.2 211 25-241 124-345 (839)
121 KOG2048 WD40 repeat protein [G 99.9 2.9E-25 6.3E-30 176.9 24.2 236 32-275 23-269 (691)
122 KOG0267 Microtubule severing p 99.9 9.3E-28 2E-32 192.4 8.8 196 26-228 62-260 (825)
123 KOG0650 WD40 repeat nucleolar 99.9 9.2E-26 2E-30 177.7 19.5 244 27-275 393-729 (733)
124 KOG4283 Transcription-coupled 99.9 2.8E-25 6E-30 161.2 19.5 207 30-240 39-280 (397)
125 KOG0639 Transducin-like enhanc 99.9 5.3E-26 1.1E-30 175.8 16.8 230 32-274 417-656 (705)
126 KOG2106 Uncharacterized conser 99.9 1.9E-24 4.1E-29 167.2 25.2 223 35-272 247-512 (626)
127 KOG1009 Chromatin assembly com 99.9 3.7E-25 7.9E-30 166.7 19.8 265 3-276 32-367 (434)
128 KOG1408 WD40 repeat protein [F 99.9 5.4E-26 1.2E-30 182.6 16.3 236 33-275 458-707 (1080)
129 KOG0303 Actin-binding protein 99.9 9.1E-25 2E-29 164.1 20.4 207 28-240 75-298 (472)
130 KOG0321 WD40 repeat-containing 99.9 5.4E-25 1.2E-29 174.4 19.2 243 28-275 94-385 (720)
131 KOG1332 Vesicle coat complex C 99.9 6.6E-25 1.4E-29 155.1 17.1 209 24-236 46-286 (299)
132 KOG0646 WD40 repeat protein [G 99.9 7.4E-25 1.6E-29 167.6 18.3 219 47-276 51-302 (476)
133 KOG4328 WD40 protein [Function 99.9 1.1E-24 2.3E-29 166.5 18.8 246 23-271 175-440 (498)
134 KOG4378 Nuclear protein COP1 [ 99.9 8.4E-25 1.8E-29 169.0 16.8 227 24-263 71-305 (673)
135 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.1E-22 6.6E-27 156.8 29.4 220 28-261 67-300 (300)
136 KOG1034 Transcriptional repres 99.9 2.2E-24 4.8E-29 158.5 15.2 240 32-275 87-377 (385)
137 KOG2919 Guanine nucleotide-bin 99.9 4.6E-24 1E-28 156.6 16.8 228 35-272 105-361 (406)
138 KOG0307 Vesicle coat complex C 99.9 3.8E-25 8.2E-30 185.7 12.0 234 34-276 64-322 (1049)
139 KOG1063 RNA polymerase II elon 99.9 1.8E-23 3.9E-28 167.3 19.1 240 29-275 262-642 (764)
140 KOG0642 Cell-cycle nuclear pro 99.9 5.5E-24 1.2E-28 166.5 15.3 247 20-275 280-555 (577)
141 KOG0270 WD40 repeat-containing 99.9 3.3E-23 7.1E-28 157.8 19.0 229 38-273 177-441 (463)
142 KOG1408 WD40 repeat protein [F 99.9 2E-23 4.3E-28 168.1 18.2 250 23-275 358-665 (1080)
143 KOG2048 WD40 repeat protein [G 99.9 2.9E-22 6.2E-27 160.0 24.3 242 24-275 58-313 (691)
144 KOG0647 mRNA export protein (c 99.9 1.4E-22 3E-27 147.6 19.9 189 28-224 66-311 (347)
145 KOG0644 Uncharacterized conser 99.9 7.2E-25 1.6E-29 178.7 8.9 245 13-271 169-458 (1113)
146 KOG4283 Transcription-coupled 99.9 2.7E-23 5.9E-28 150.9 15.2 194 73-273 40-268 (397)
147 KOG2110 Uncharacterized conser 99.9 9.5E-22 2.1E-26 146.8 23.4 229 34-275 5-242 (391)
148 KOG1007 WD repeat protein TSSC 99.9 1E-22 2.3E-27 147.4 17.6 237 27-274 56-354 (370)
149 KOG0270 WD40 repeat-containing 99.9 3.1E-23 6.7E-28 158.0 15.5 207 31-242 240-455 (463)
150 KOG2096 WD40 repeat protein [G 99.9 1.3E-22 2.8E-27 148.9 18.0 195 32-234 185-400 (420)
151 KOG1538 Uncharacterized conser 99.9 7.3E-23 1.6E-27 163.8 18.0 227 36-275 14-287 (1081)
152 KOG4328 WD40 protein [Function 99.9 9.9E-23 2.2E-27 155.8 17.9 246 22-272 222-485 (498)
153 KOG1539 WD repeat protein [Gen 99.9 2E-21 4.3E-26 158.7 25.6 147 37-187 162-315 (910)
154 KOG1063 RNA polymerase II elon 99.9 1.1E-22 2.3E-27 162.9 17.7 249 22-274 349-692 (764)
155 KOG1273 WD40 repeat protein [G 99.9 1.4E-22 3.1E-27 148.4 16.9 192 79-275 26-220 (405)
156 KOG0268 Sof1-like rRNA process 99.9 2.2E-23 4.8E-28 155.1 12.0 209 24-241 99-350 (433)
157 KOG1445 Tumor-specific antigen 99.9 4.1E-23 9E-28 164.3 14.0 124 26-152 71-201 (1012)
158 KOG4378 Nuclear protein COP1 [ 99.9 1.4E-22 2.9E-27 156.9 15.7 229 36-275 36-274 (673)
159 KOG0302 Ribosome Assembly prot 99.9 4.4E-22 9.5E-27 149.0 17.2 207 22-233 199-435 (440)
160 KOG0322 G-protein beta subunit 99.9 2.6E-22 5.7E-27 143.6 15.0 244 25-276 5-318 (323)
161 KOG2106 Uncharacterized conser 99.9 1.5E-21 3.3E-26 151.3 20.3 239 28-274 362-619 (626)
162 KOG0321 WD40 repeat-containing 99.9 6.3E-22 1.4E-26 157.2 17.8 239 32-274 45-340 (720)
163 KOG2919 Guanine nucleotide-bin 99.9 5.5E-21 1.2E-25 140.7 19.5 232 37-276 52-322 (406)
164 PRK11028 6-phosphogluconolacto 99.9 1E-19 2.3E-24 144.3 27.8 247 23-275 24-298 (330)
165 KOG1034 Transcriptional repres 99.9 3.7E-22 8E-27 146.9 12.6 208 24-236 125-383 (385)
166 KOG0307 Vesicle coat complex C 99.9 1.1E-22 2.4E-27 171.1 11.0 212 22-239 104-330 (1049)
167 KOG0290 Conserved WD40 repeat- 99.9 6.4E-21 1.4E-25 138.3 17.5 231 31-273 93-358 (364)
168 KOG1188 WD40 repeat protein [G 99.9 1.7E-21 3.7E-26 144.1 14.7 189 47-239 41-245 (376)
169 PRK01742 tolB translocation pr 99.9 2.1E-20 4.5E-25 152.7 22.5 221 28-262 197-426 (429)
170 KOG0771 Prolactin regulatory e 99.9 3.3E-21 7.1E-26 146.3 15.2 188 80-273 148-346 (398)
171 KOG4227 WD40 repeat protein [G 99.9 1.6E-20 3.4E-25 141.9 18.4 239 28-273 50-379 (609)
172 KOG2445 Nuclear pore complex c 99.9 1.3E-19 2.9E-24 132.5 21.5 224 18-245 43-330 (361)
173 KOG1445 Tumor-specific antigen 99.9 5.8E-21 1.3E-25 152.2 14.9 202 34-239 627-847 (1012)
174 COG2319 FOG: WD40 repeat [Gene 99.9 2E-18 4.3E-23 141.2 30.6 237 29-274 60-307 (466)
175 KOG1310 WD40 repeat protein [G 99.9 7.4E-21 1.6E-25 149.1 15.0 227 16-245 32-312 (758)
176 KOG2111 Uncharacterized conser 99.9 4.3E-19 9.3E-24 130.4 22.1 232 36-275 7-250 (346)
177 KOG1523 Actin-related protein 99.9 3.3E-20 7.2E-25 136.3 16.4 199 72-276 6-231 (361)
178 KOG1524 WD40 repeat-containing 99.9 9.7E-21 2.1E-25 148.1 13.7 189 24-233 94-283 (737)
179 KOG0771 Prolactin regulatory e 99.9 1.8E-20 3.8E-25 142.3 14.3 193 38-237 148-355 (398)
180 KOG0649 WD40 repeat protein [G 99.9 1.3E-18 2.9E-23 123.5 22.6 220 26-262 54-296 (325)
181 KOG1523 Actin-related protein 99.9 2.6E-19 5.7E-24 131.6 19.7 228 30-263 6-261 (361)
182 KOG1036 Mitotic spindle checkp 99.9 1.8E-19 3.8E-24 131.8 18.3 189 28-226 88-294 (323)
183 COG2319 FOG: WD40 repeat [Gene 99.9 1.1E-17 2.3E-22 136.9 30.7 242 27-274 101-352 (466)
184 KOG2055 WD40 repeat protein [G 99.8 2E-19 4.4E-24 138.1 18.5 190 76-275 213-411 (514)
185 KOG1007 WD repeat protein TSSC 99.8 8.9E-20 1.9E-24 132.4 15.7 209 23-236 111-361 (370)
186 PRK03629 tolB translocation pr 99.8 2.6E-18 5.6E-23 140.2 25.9 222 29-262 193-428 (429)
187 KOG1524 WD40 repeat-containing 99.8 4.4E-20 9.5E-25 144.5 14.0 195 32-236 12-216 (737)
188 KOG1272 WD40-repeat-containing 99.8 1.6E-20 3.4E-25 144.3 10.5 217 35-266 130-349 (545)
189 KOG0642 Cell-cycle nuclear pro 99.8 5.3E-20 1.2E-24 144.4 13.1 217 21-245 331-570 (577)
190 PRK01742 tolB translocation pr 99.8 1.2E-18 2.7E-23 142.3 21.4 207 55-275 183-395 (429)
191 KOG1538 Uncharacterized conser 99.8 6.9E-20 1.5E-24 147.0 12.8 188 78-276 14-206 (1081)
192 KOG1009 Chromatin assembly com 99.8 8.9E-19 1.9E-23 132.5 16.9 189 34-225 13-249 (434)
193 KOG0649 WD40 repeat protein [G 99.8 1.1E-17 2.3E-22 119.0 20.8 219 36-271 12-264 (325)
194 KOG1587 Cytoplasmic dynein int 99.8 2.6E-18 5.6E-23 140.5 20.4 241 25-275 234-510 (555)
195 KOG0650 WD40 repeat nucleolar 99.8 4.5E-19 9.8E-24 140.4 14.5 202 28-233 515-732 (733)
196 KOG2110 Uncharacterized conser 99.8 3.7E-17 8E-22 122.6 23.6 206 34-245 87-341 (391)
197 PRK05137 tolB translocation pr 99.8 3.7E-17 8.1E-22 134.1 25.7 223 27-262 194-433 (435)
198 PRK04922 tolB translocation pr 99.8 2.5E-17 5.4E-22 134.9 24.3 223 27-261 196-432 (433)
199 PRK05137 tolB translocation pr 99.8 3.7E-17 8.1E-22 134.1 25.1 205 56-272 182-397 (435)
200 PRK11028 6-phosphogluconolacto 99.8 1.5E-16 3.2E-21 126.3 27.5 217 50-271 6-247 (330)
201 KOG1188 WD40 repeat protein [G 99.8 1.4E-18 2.9E-23 128.9 14.3 166 89-263 41-223 (376)
202 KOG0303 Actin-binding protein 99.8 2.4E-18 5.2E-23 130.0 15.7 204 9-217 106-320 (472)
203 KOG4497 Uncharacterized conser 99.8 7.9E-19 1.7E-23 129.8 12.3 216 39-275 13-234 (447)
204 KOG1517 Guanine nucleotide bin 99.8 4.6E-18 1E-22 142.8 18.1 238 34-276 1109-1376(1387)
205 PRK02889 tolB translocation pr 99.8 9.3E-17 2E-21 131.2 25.4 221 28-262 189-425 (427)
206 PRK03629 tolB translocation pr 99.8 1.2E-16 2.6E-21 130.4 25.7 207 56-274 179-396 (429)
207 KOG3881 Uncharacterized conser 99.8 1.9E-17 4.1E-22 125.0 18.3 221 29-262 100-342 (412)
208 PRK04922 tolB translocation pr 99.8 5.8E-17 1.3E-21 132.8 22.6 205 56-272 184-399 (433)
209 KOG2139 WD40 repeat protein [G 99.8 4.8E-17 1E-21 121.8 18.7 225 35-271 99-365 (445)
210 KOG2139 WD40 repeat protein [G 99.8 2.5E-16 5.4E-21 118.1 22.3 203 34-240 140-387 (445)
211 PF02239 Cytochrom_D1: Cytochr 99.8 1E-15 2.2E-20 121.7 26.9 244 24-273 26-337 (369)
212 KOG1963 WD40 repeat protein [G 99.8 1.8E-16 3.8E-21 130.8 23.1 237 32-272 203-530 (792)
213 KOG2321 WD40 repeat protein [G 99.8 7E-17 1.5E-21 127.6 19.7 241 22-274 40-336 (703)
214 PRK02889 tolB translocation pr 99.8 2.2E-16 4.8E-21 129.0 23.2 208 56-273 176-392 (427)
215 KOG1963 WD40 repeat protein [G 99.8 1.5E-16 3.3E-21 131.2 21.9 227 38-273 20-314 (792)
216 PF08662 eIF2A: Eukaryotic tra 99.8 1.1E-16 2.4E-21 116.1 18.6 158 80-245 9-187 (194)
217 KOG1334 WD40 repeat protein [G 99.8 3.1E-18 6.6E-23 132.6 10.8 250 19-274 127-459 (559)
218 KOG2111 Uncharacterized conser 99.8 3.4E-15 7.4E-20 110.1 24.2 184 2-193 64-259 (346)
219 PF10282 Lactonase: Lactonase, 99.8 1.4E-14 3E-19 115.3 29.7 245 22-272 25-312 (345)
220 KOG0322 G-protein beta subunit 99.8 3.9E-17 8.4E-22 117.4 13.3 203 26-235 47-322 (323)
221 KOG1272 WD40-repeat-containing 99.7 2.7E-18 5.9E-23 132.2 7.2 228 35-276 171-404 (545)
222 PF08662 eIF2A: Eukaryotic tra 99.7 4.6E-16 1E-20 112.8 18.1 150 38-191 9-180 (194)
223 KOG1240 Protein kinase contain 99.7 1.4E-15 3E-20 129.9 22.9 217 23-245 1037-1282(1431)
224 KOG0290 Conserved WD40 repeat- 99.7 3.7E-16 8E-21 113.9 16.6 190 31-226 147-356 (364)
225 PRK00178 tolB translocation pr 99.7 5.7E-15 1.2E-19 121.4 25.8 223 28-262 192-428 (430)
226 KOG4497 Uncharacterized conser 99.7 2.7E-15 5.8E-20 111.4 21.0 236 28-274 85-425 (447)
227 TIGR02800 propeller_TolB tol-p 99.7 4.2E-15 9.2E-20 121.9 24.7 206 56-273 170-386 (417)
228 TIGR02800 propeller_TolB tol-p 99.7 5.8E-15 1.2E-19 121.1 25.1 220 28-259 183-416 (417)
229 PRK04792 tolB translocation pr 99.7 7.8E-15 1.7E-19 120.4 24.4 221 30-262 213-447 (448)
230 KOG1587 Cytoplasmic dynein int 99.7 3.7E-15 8.1E-20 122.1 21.4 215 56-275 222-466 (555)
231 COG2706 3-carboxymuconate cycl 99.7 1.2E-13 2.5E-18 104.1 27.2 240 32-273 37-312 (346)
232 KOG2394 WD40 protein DMR-N9 [G 99.7 1.5E-15 3.2E-20 119.4 17.8 212 39-261 128-384 (636)
233 KOG1517 Guanine nucleotide bin 99.7 9.8E-16 2.1E-20 129.1 16.5 199 38-239 1169-1384(1387)
234 PRK00178 tolB translocation pr 99.7 4.5E-14 9.8E-19 116.1 25.5 204 57-272 180-394 (430)
235 KOG2394 WD40 protein DMR-N9 [G 99.7 9.5E-16 2.1E-20 120.4 14.4 162 34-216 219-384 (636)
236 KOG4227 WD40 repeat protein [G 99.7 1.4E-15 3E-20 115.4 13.9 195 70-268 50-261 (609)
237 KOG3881 Uncharacterized conser 99.7 1.5E-14 3.2E-19 109.6 19.2 231 33-275 54-314 (412)
238 PRK01029 tolB translocation pr 99.7 8.5E-14 1.8E-18 113.5 24.8 224 30-263 180-426 (428)
239 PF10282 Lactonase: Lactonase, 99.7 1E-12 2.2E-17 104.6 29.9 233 23-259 75-345 (345)
240 KOG1354 Serine/threonine prote 99.7 1.4E-14 3.1E-19 108.1 17.8 236 34-274 25-352 (433)
241 PRK04792 tolB translocation pr 99.7 1.3E-13 2.8E-18 113.2 24.2 205 57-273 199-414 (448)
242 KOG1310 WD40 repeat protein [G 99.7 2E-15 4.4E-20 119.1 12.1 165 68-235 42-230 (758)
243 TIGR02658 TTQ_MADH_Hv methylam 99.7 3.5E-12 7.5E-17 99.6 29.8 226 42-275 53-324 (352)
244 PRK01029 tolB translocation pr 99.6 7.9E-13 1.7E-17 107.8 23.8 207 56-271 165-390 (428)
245 KOG0644 Uncharacterized conser 99.6 3.9E-16 8.5E-21 128.5 4.3 198 68-274 182-419 (1113)
246 KOG1064 RAVE (regulator of V-A 99.6 1.1E-14 2.4E-19 128.7 12.7 224 30-274 2204-2439(2439)
247 KOG2041 WD40 repeat protein [G 99.6 5.5E-14 1.2E-18 114.6 15.3 233 34-273 14-280 (1189)
248 PF08450 SGL: SMP-30/Gluconola 99.6 5E-11 1.1E-15 90.6 30.5 220 39-270 4-244 (246)
249 PF02239 Cytochrom_D1: Cytochr 99.6 3.3E-12 7.3E-17 101.7 24.9 192 47-245 6-211 (369)
250 KOG4547 WD40 repeat-containing 99.6 5.6E-13 1.2E-17 106.1 18.3 186 44-237 3-221 (541)
251 COG2706 3-carboxymuconate cycl 99.6 2.3E-11 5E-16 92.0 25.2 214 55-269 15-261 (346)
252 KOG1240 Protein kinase contain 99.6 7.3E-13 1.6E-17 113.7 18.7 202 61-271 1034-1261(1431)
253 PRK04043 tolB translocation pr 99.6 2.1E-11 4.5E-16 99.0 26.4 200 36-245 189-408 (419)
254 KOG0974 WD-repeat protein WDR6 99.5 1.7E-13 3.7E-18 115.5 14.2 189 40-237 93-289 (967)
255 KOG2321 WD40 repeat protein [G 99.5 3E-13 6.6E-18 107.4 14.8 192 39-238 138-345 (703)
256 PRK04043 tolB translocation pr 99.5 3.7E-11 8E-16 97.6 27.0 203 56-273 169-389 (419)
257 KOG2315 Predicted translation 99.5 7.5E-12 1.6E-16 99.3 20.3 216 33-261 164-410 (566)
258 KOG2314 Translation initiation 99.5 5.2E-12 1.1E-16 100.3 19.3 229 36-273 251-559 (698)
259 KOG2315 Predicted translation 99.5 3.9E-12 8.4E-17 100.9 18.5 220 36-272 75-375 (566)
260 KOG1409 Uncharacterized conser 99.5 3.1E-12 6.8E-17 95.8 16.1 244 22-275 12-264 (404)
261 COG4946 Uncharacterized protei 99.5 4.1E-11 8.9E-16 93.7 21.4 213 43-270 275-507 (668)
262 KOG4547 WD40 repeat-containing 99.5 1.5E-11 3.3E-16 98.2 18.7 172 86-269 3-207 (541)
263 TIGR02658 TTQ_MADH_Hv methylam 99.5 4.9E-10 1.1E-14 87.7 26.7 205 56-269 27-265 (352)
264 PLN02919 haloacid dehalogenase 99.5 4.8E-10 1E-14 100.7 29.6 233 39-275 572-882 (1057)
265 KOG4190 Uncharacterized conser 99.4 3.7E-13 8E-18 107.0 8.5 161 28-193 729-909 (1034)
266 KOG0280 Uncharacterized conser 99.4 6E-11 1.3E-15 87.2 18.6 229 34-270 69-320 (339)
267 KOG1354 Serine/threonine prote 99.4 8.3E-12 1.8E-16 93.6 14.0 199 35-238 85-361 (433)
268 COG5170 CDC55 Serine/threonine 99.4 1.6E-11 3.4E-16 91.2 15.1 234 34-272 26-358 (460)
269 KOG4532 WD40-like repeat conta 99.4 1.4E-10 3.1E-15 84.3 19.5 224 46-272 84-323 (344)
270 KOG2041 WD40 repeat protein [G 99.4 1.2E-11 2.6E-16 101.2 15.4 233 23-269 60-326 (1189)
271 KOG1832 HIV-1 Vpr-binding prot 99.4 1.9E-13 4.2E-18 113.9 5.1 224 21-268 1088-1318(1516)
272 KOG1275 PAB-dependent poly(A) 99.4 1.6E-11 3.4E-16 102.9 15.7 182 46-234 147-340 (1118)
273 COG4946 Uncharacterized protei 99.4 3.2E-10 7E-15 88.9 21.0 122 32-157 357-483 (668)
274 KOG0280 Uncharacterized conser 99.4 2.7E-11 5.9E-16 89.0 14.2 199 37-238 124-335 (339)
275 COG5354 Uncharacterized protei 99.4 5.4E-10 1.2E-14 88.2 20.9 220 35-273 174-421 (561)
276 PF04762 IKI3: IKI3 family; I 99.4 1.3E-09 2.8E-14 96.3 25.6 232 33-273 74-371 (928)
277 PLN02919 haloacid dehalogenase 99.4 1.9E-09 4.2E-14 96.9 26.9 200 37-240 626-892 (1057)
278 KOG0974 WD-repeat protein WDR6 99.3 1.5E-11 3.3E-16 104.1 12.2 145 42-192 141-290 (967)
279 KOG3914 WD repeat protein WDR4 99.3 6.5E-11 1.4E-15 90.5 13.7 156 37-194 65-227 (390)
280 KOG2314 Translation initiation 99.3 5.2E-10 1.1E-14 89.2 19.0 222 38-271 214-465 (698)
281 KOG1409 Uncharacterized conser 99.3 2.8E-10 6E-15 85.6 15.9 166 20-191 100-271 (404)
282 KOG4190 Uncharacterized conser 99.3 6.6E-12 1.4E-16 100.1 5.8 172 69-245 728-915 (1034)
283 PF07433 DUF1513: Protein of u 99.3 3.3E-08 7.1E-13 75.1 25.1 225 38-272 8-277 (305)
284 TIGR03300 assembly_YfgL outer 99.3 4.2E-09 9.1E-14 85.4 21.9 213 46-275 145-373 (377)
285 COG5354 Uncharacterized protei 99.3 4.6E-09 1E-13 83.0 20.8 223 35-273 72-337 (561)
286 KOG1334 WD40 repeat protein [G 99.3 6.1E-11 1.3E-15 92.8 10.2 205 27-238 225-468 (559)
287 PF15492 Nbas_N: Neuroblastoma 99.2 2.4E-08 5.2E-13 73.8 22.8 202 40-246 3-269 (282)
288 KOG4532 WD40-like repeat conta 99.2 1.7E-09 3.7E-14 78.9 16.2 206 53-264 49-263 (344)
289 KOG0309 Conserved WD40 repeat- 99.2 2.4E-10 5.2E-15 94.1 11.3 222 34-264 24-258 (1081)
290 PF13360 PQQ_2: PQQ-like domai 99.2 2E-08 4.2E-13 76.1 21.1 186 45-242 35-236 (238)
291 TIGR03300 assembly_YfgL outer 99.2 2.1E-08 4.6E-13 81.3 21.9 211 45-275 104-332 (377)
292 PF00400 WD40: WD domain, G-be 99.2 1.3E-10 2.8E-15 61.1 5.9 38 25-62 2-39 (39)
293 KOG1064 RAVE (regulator of V-A 99.2 2E-10 4.4E-15 102.7 10.3 179 75-274 2207-2391(2439)
294 KOG2695 WD40 repeat protein [G 99.2 3.6E-10 7.8E-15 85.1 9.6 159 100-261 233-402 (425)
295 PF04762 IKI3: IKI3 family; I 99.1 7.4E-08 1.6E-12 85.5 25.0 237 33-272 208-507 (928)
296 KOG0309 Conserved WD40 repeat- 99.1 4.3E-10 9.4E-15 92.6 10.0 209 26-237 106-340 (1081)
297 PF15492 Nbas_N: Neuroblastoma 99.1 9.5E-08 2.1E-12 70.7 20.6 190 82-276 3-254 (282)
298 KOG3914 WD repeat protein WDR4 99.1 2.5E-09 5.4E-14 82.0 12.2 160 78-245 64-232 (390)
299 KOG0882 Cyclophilin-related pe 99.1 2.4E-09 5.3E-14 83.4 12.1 235 32-271 7-296 (558)
300 PF07433 DUF1513: Protein of u 99.1 1.4E-07 2.9E-12 71.8 21.1 188 27-230 49-279 (305)
301 PF00400 WD40: WD domain, G-be 99.1 8.4E-10 1.8E-14 57.9 5.9 38 112-149 2-39 (39)
302 KOG1912 WD40 repeat protein [G 99.1 5.6E-08 1.2E-12 81.0 18.9 232 36-275 17-298 (1062)
303 KOG1912 WD40 repeat protein [G 99.1 3.1E-08 6.8E-13 82.4 17.5 209 22-237 43-305 (1062)
304 PF13360 PQQ_2: PQQ-like domai 99.0 4.5E-07 9.7E-12 68.7 21.9 204 55-275 2-224 (238)
305 KOG4714 Nucleoporin [Nuclear s 99.0 1.3E-08 2.8E-13 74.0 12.1 166 26-191 81-255 (319)
306 KOG2695 WD40 repeat protein [G 99.0 3.6E-09 7.9E-14 79.8 8.2 139 50-194 228-380 (425)
307 KOG1920 IkappaB kinase complex 99.0 7.4E-07 1.6E-11 78.0 22.8 201 33-239 67-325 (1265)
308 PRK02888 nitrous-oxide reducta 98.9 6.8E-07 1.5E-11 74.3 21.5 221 42-270 200-450 (635)
309 COG5170 CDC55 Serine/threonine 98.9 2.2E-08 4.8E-13 74.8 11.7 191 76-270 26-299 (460)
310 PF08450 SGL: SMP-30/Gluconola 98.9 5.7E-06 1.2E-10 63.0 25.2 180 37-225 42-244 (246)
311 PRK11138 outer membrane biogen 98.9 4.6E-07 9.9E-12 73.9 20.3 212 47-275 161-388 (394)
312 KOG1832 HIV-1 Vpr-binding prot 98.9 1.2E-09 2.7E-14 91.9 5.0 190 67-270 1092-1285(1516)
313 PF04053 Coatomer_WDAD: Coatom 98.9 1.4E-06 3.1E-11 71.0 22.3 222 29-274 27-255 (443)
314 KOG0882 Cyclophilin-related pe 98.9 5.3E-08 1.2E-12 76.2 13.1 218 24-245 43-314 (558)
315 COG0823 TolB Periplasmic compo 98.9 3E-07 6.4E-12 74.7 17.8 204 58-272 175-390 (425)
316 KOG3617 WD40 and TPR repeat-co 98.9 2.2E-07 4.7E-12 78.5 17.0 110 37-151 18-131 (1416)
317 KOG2066 Vacuolar assembly/sort 98.9 3.6E-07 7.8E-12 76.5 18.1 154 29-191 53-234 (846)
318 KOG1275 PAB-dependent poly(A) 98.9 1.1E-07 2.3E-12 80.7 15.1 178 87-275 146-336 (1118)
319 COG0823 TolB Periplasmic compo 98.9 9.8E-07 2.1E-11 71.7 20.2 190 30-226 188-389 (425)
320 KOG2114 Vacuolar assembly/sort 98.9 1.8E-06 3.9E-11 73.0 21.7 223 41-273 30-275 (933)
321 KOG1645 RING-finger-containing 98.9 2E-07 4.3E-12 72.0 14.5 240 24-272 183-453 (463)
322 COG3391 Uncharacterized conser 98.8 1.1E-05 2.3E-10 65.4 24.9 220 38-262 77-309 (381)
323 KOG4714 Nucleoporin [Nuclear s 98.8 4.5E-08 9.8E-13 71.3 9.8 193 37-237 39-255 (319)
324 PF06977 SdiA-regulated: SdiA- 98.8 8.2E-06 1.8E-10 61.3 21.9 205 28-269 15-239 (248)
325 KOG2066 Vacuolar assembly/sort 98.8 6E-07 1.3E-11 75.3 16.0 170 78-266 41-220 (846)
326 KOG1920 IkappaB kinase complex 98.8 6.2E-06 1.3E-10 72.5 22.6 184 77-270 69-308 (1265)
327 PF00930 DPPIV_N: Dipeptidyl p 98.8 3.8E-05 8.2E-10 61.7 25.2 227 34-271 42-347 (353)
328 PRK11138 outer membrane biogen 98.7 4.8E-06 1E-10 68.0 19.9 186 46-244 120-320 (394)
329 PF00930 DPPIV_N: Dipeptidyl p 98.7 9.1E-06 2E-10 65.3 21.2 216 43-267 1-296 (353)
330 KOG1008 Uncharacterized conser 98.7 5.1E-09 1.1E-13 85.2 2.0 202 34-236 56-275 (783)
331 COG3386 Gluconolactonase [Carb 98.7 6.7E-05 1.5E-09 58.4 25.2 220 39-270 29-274 (307)
332 PF04841 Vps16_N: Vps16, N-ter 98.7 4.8E-05 1E-09 62.2 24.2 207 40-264 34-272 (410)
333 PF11768 DUF3312: Protein of u 98.7 5.1E-06 1.1E-10 67.8 18.2 89 103-191 238-330 (545)
334 KOG2114 Vacuolar assembly/sort 98.7 3.2E-06 7E-11 71.6 17.2 182 83-271 30-234 (933)
335 PF08596 Lgl_C: Lethal giant l 98.6 5.1E-05 1.1E-09 61.3 22.3 228 36-271 3-326 (395)
336 PF03178 CPSF_A: CPSF A subuni 98.6 8.9E-05 1.9E-09 58.9 23.2 214 56-275 2-259 (321)
337 KOG3621 WD40 repeat-containing 98.6 2.7E-06 5.9E-11 70.5 14.5 117 33-152 32-155 (726)
338 COG3391 Uncharacterized conser 98.6 0.00021 4.6E-09 58.0 25.5 230 36-270 32-271 (381)
339 PF04053 Coatomer_WDAD: Coatom 98.6 2.2E-05 4.7E-10 64.3 18.9 166 75-262 31-207 (443)
340 PRK02888 nitrous-oxide reducta 98.5 4.7E-05 1E-09 63.8 20.3 218 45-272 140-395 (635)
341 PF11768 DUF3312: Protein of u 98.5 7.2E-07 1.6E-11 72.5 9.3 75 32-111 257-331 (545)
342 PF06433 Me-amine-dh_H: Methyl 98.5 0.00025 5.3E-09 55.2 23.4 227 39-273 40-312 (342)
343 PF08553 VID27: VID27 cytoplas 98.5 3E-05 6.6E-10 67.1 17.6 132 53-190 501-647 (794)
344 KOG1645 RING-finger-containing 98.4 3.8E-06 8.3E-11 65.2 10.9 162 103-269 175-349 (463)
345 PF00780 CNH: CNH domain; Int 98.4 0.00038 8.2E-09 54.0 21.9 139 45-192 6-167 (275)
346 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.0003 6.4E-09 52.1 21.3 141 46-191 23-166 (354)
347 cd00216 PQQ_DH Dehydrogenases 98.4 0.00041 9E-09 58.3 23.1 185 54-246 173-434 (488)
348 PF05694 SBP56: 56kDa selenium 98.4 0.00069 1.5E-08 54.3 21.8 226 45-270 86-392 (461)
349 PF02897 Peptidase_S9_N: Proly 98.4 0.00093 2E-08 55.1 27.9 224 37-266 126-385 (414)
350 PF14583 Pectate_lyase22: Olig 98.3 0.00056 1.2E-08 54.3 20.7 223 41-272 42-303 (386)
351 PF08553 VID27: VID27 cytoplas 98.3 2.5E-05 5.5E-10 67.6 14.1 133 134-271 494-638 (794)
352 smart00320 WD40 WD40 repeats. 98.2 3.8E-06 8.1E-11 43.1 4.8 38 25-62 3-40 (40)
353 PRK13616 lipoprotein LpqB; Pro 98.2 0.00041 9E-09 59.2 19.1 189 77-273 350-560 (591)
354 KOG3621 WD40 repeat-containing 98.2 2.5E-05 5.3E-10 65.1 10.9 118 120-237 32-155 (726)
355 PF14783 BBS2_Mid: Ciliary BBS 98.2 0.00029 6.3E-09 45.3 13.5 100 37-146 2-109 (111)
356 KOG4640 Anaphase-promoting com 98.2 1.4E-05 2.9E-10 65.8 9.1 90 77-170 21-114 (665)
357 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.0012 2.6E-08 49.0 19.3 103 46-151 63-165 (354)
358 PF03178 CPSF_A: CPSF A subuni 98.1 0.0022 4.8E-08 50.9 20.9 180 46-233 42-262 (321)
359 KOG4640 Anaphase-promoting com 98.1 1.5E-05 3.3E-10 65.5 8.5 94 34-131 20-115 (665)
360 cd00216 PQQ_DH Dehydrogenases 98.1 0.0019 4E-08 54.5 21.0 192 46-245 61-328 (488)
361 KOG1008 Uncharacterized conser 98.1 6.3E-07 1.4E-11 73.4 -0.0 159 28-191 96-276 (783)
362 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0019 4.1E-08 53.0 19.9 163 102-275 62-240 (410)
363 PF08596 Lgl_C: Lethal giant l 98.1 0.00066 1.4E-08 55.0 16.9 200 22-227 74-327 (395)
364 PF06433 Me-amine-dh_H: Methyl 98.1 0.0029 6.2E-08 49.5 25.2 196 39-245 99-329 (342)
365 smart00320 WD40 WD40 repeats. 98.1 1.5E-05 3.4E-10 40.7 5.3 38 112-149 3-40 (40)
366 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.00087 1.9E-08 43.1 13.4 100 124-232 2-110 (111)
367 PRK13616 lipoprotein LpqB; Pro 98.0 0.0013 2.8E-08 56.2 18.7 188 35-232 350-564 (591)
368 KOG2395 Protein involved in va 98.0 0.0002 4.4E-09 58.1 12.2 135 132-271 344-491 (644)
369 PF10647 Gmad1: Lipoprotein Lp 97.9 0.0043 9.3E-08 47.4 18.0 148 123-273 25-187 (253)
370 PF00780 CNH: CNH domain; Int 97.9 0.0066 1.4E-07 47.1 19.7 149 86-244 5-173 (275)
371 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.013 2.7E-07 49.9 23.3 102 55-156 180-338 (527)
372 KOG2395 Protein involved in va 97.9 0.0016 3.6E-08 53.1 15.1 141 87-235 344-499 (644)
373 COG3490 Uncharacterized protei 97.9 0.0046 9.9E-08 46.7 16.2 186 41-234 120-346 (366)
374 KOG3617 WD40 and TPR repeat-co 97.8 6.7E-05 1.5E-09 64.1 6.6 107 125-236 19-131 (1416)
375 KOG4499 Ca2+-binding protein R 97.8 0.0081 1.8E-07 44.1 20.9 208 47-262 28-264 (310)
376 PF06977 SdiA-regulated: SdiA- 97.7 0.01 2.2E-07 44.9 17.1 149 35-187 65-247 (248)
377 PF05096 Glu_cyclase_2: Glutam 97.7 0.011 2.4E-07 44.6 21.6 187 79-270 47-249 (264)
378 PF02897 Peptidase_S9_N: Proly 97.7 0.024 5.1E-07 46.9 20.3 160 79-239 126-312 (414)
379 PF14583 Pectate_lyase22: Olig 97.7 0.02 4.3E-07 45.8 22.0 226 39-271 85-370 (386)
380 PF12894 Apc4_WD40: Anaphase-p 97.6 0.00027 5.9E-09 38.0 5.4 34 34-68 11-44 (47)
381 KOG4441 Proteins containing BT 97.6 0.016 3.6E-07 49.7 18.4 219 45-274 284-534 (571)
382 PHA02713 hypothetical protein; 97.6 0.009 2E-07 51.2 16.6 194 45-244 303-541 (557)
383 PRK10115 protease 2; Provision 97.6 0.046 1E-06 48.2 25.6 195 35-234 127-342 (686)
384 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.038 8.3E-07 47.1 21.5 189 46-242 69-339 (527)
385 PF05096 Glu_cyclase_2: Glutam 97.6 0.019 4.2E-07 43.4 22.5 195 23-225 32-249 (264)
386 COG3386 Gluconolactonase [Carb 97.6 0.0052 1.1E-07 48.1 13.6 139 127-271 30-182 (307)
387 KOG2079 Vacuolar assembly/sort 97.6 0.0011 2.3E-08 58.5 10.6 101 46-151 99-203 (1206)
388 KOG2079 Vacuolar assembly/sort 97.6 0.00066 1.4E-08 59.7 9.4 104 167-273 93-197 (1206)
389 PF12894 Apc4_WD40: Anaphase-p 97.6 0.00041 8.9E-09 37.3 5.3 35 205-240 10-44 (47)
390 PF14870 PSII_BNR: Photosynthe 97.5 0.026 5.6E-07 44.1 23.0 226 37-274 64-297 (302)
391 PF14870 PSII_BNR: Photosynthe 97.5 0.027 5.9E-07 43.9 22.3 153 74-233 142-301 (302)
392 PHA02713 hypothetical protein; 97.5 0.029 6.4E-07 48.2 18.5 205 57-274 273-524 (557)
393 COG3204 Uncharacterized protei 97.4 0.032 6.9E-07 42.6 20.3 195 73-272 82-304 (316)
394 KOG4441 Proteins containing BT 97.4 0.034 7.4E-07 47.8 17.9 209 23-242 312-552 (571)
395 COG3204 Uncharacterized protei 97.4 0.034 7.3E-07 42.4 19.8 158 31-191 82-264 (316)
396 PHA03098 kelch-like protein; P 97.4 0.056 1.2E-06 46.4 18.9 190 45-240 294-515 (534)
397 PF14655 RAB3GAP2_N: Rab3 GTPa 97.3 0.062 1.3E-06 43.9 20.9 40 206-245 307-346 (415)
398 KOG2444 WD40 repeat protein [G 97.3 0.00069 1.5E-08 49.2 5.5 127 135-269 32-163 (238)
399 KOG2444 WD40 repeat protein [G 97.3 0.0011 2.4E-08 48.1 6.4 104 46-152 70-178 (238)
400 PHA02790 Kelch-like protein; P 97.3 0.074 1.6E-06 44.9 18.2 186 45-239 271-473 (480)
401 TIGR03074 PQQ_membr_DH membran 97.3 0.12 2.6E-06 45.9 24.7 195 46-246 194-487 (764)
402 TIGR02604 Piru_Ver_Nterm putat 97.3 0.052 1.1E-06 44.1 16.6 142 123-270 15-202 (367)
403 COG3490 Uncharacterized protei 97.3 0.052 1.1E-06 41.3 16.8 146 122-270 68-244 (366)
404 COG3823 Glutamine cyclotransfe 97.2 0.04 8.6E-07 39.9 16.3 180 87-269 55-247 (262)
405 KOG2280 Vacuolar assembly/sort 97.1 0.061 1.3E-06 46.3 15.8 181 56-246 64-256 (829)
406 KOG1897 Damage-specific DNA bi 97.1 0.18 3.9E-06 45.0 19.0 149 37-191 777-943 (1096)
407 PF07995 GSDH: Glucose / Sorbo 97.1 0.1 2.2E-06 41.7 26.8 237 36-275 3-329 (331)
408 COG5167 VID27 Protein involved 97.1 0.022 4.8E-07 46.8 12.3 135 132-271 478-623 (776)
409 PF12234 Rav1p_C: RAVE protein 97.0 0.069 1.5E-06 45.9 15.2 110 78-191 31-157 (631)
410 COG3823 Glutamine cyclotransfe 97.0 0.077 1.7E-06 38.5 13.3 174 45-224 55-247 (262)
411 KOG3630 Nuclear pore complex, 96.9 0.03 6.6E-07 50.3 12.3 141 123-268 102-260 (1405)
412 PF10647 Gmad1: Lipoprotein Lp 96.8 0.15 3.3E-06 39.0 20.8 148 78-228 25-187 (253)
413 PF05694 SBP56: 56kDa selenium 96.8 0.22 4.7E-06 40.6 22.1 186 40-225 135-392 (461)
414 TIGR02604 Piru_Ver_Nterm putat 96.8 0.22 4.7E-06 40.6 23.8 140 35-180 14-202 (367)
415 PHA03098 kelch-like protein; P 96.8 0.16 3.5E-06 43.6 16.0 145 45-191 342-512 (534)
416 PRK13684 Ycf48-like protein; P 96.8 0.21 4.6E-06 40.0 23.4 146 121-270 172-321 (334)
417 KOG2247 WD40 repeat-containing 96.7 3.4E-05 7.3E-10 61.9 -6.2 143 35-181 35-179 (615)
418 PRK13684 Ycf48-like protein; P 96.5 0.3 6.5E-06 39.1 15.3 148 34-189 172-330 (334)
419 PF15390 DUF4613: Domain of un 96.5 0.13 2.9E-06 43.2 12.9 140 122-271 20-175 (671)
420 PF12234 Rav1p_C: RAVE protein 96.5 0.17 3.7E-06 43.6 13.8 103 166-271 34-148 (631)
421 PF10168 Nup88: Nuclear pore c 96.4 0.66 1.4E-05 41.2 18.5 94 34-153 84-181 (717)
422 PF07250 Glyoxal_oxid_N: Glyox 96.4 0.26 5.7E-06 37.2 12.9 142 103-246 48-207 (243)
423 COG5167 VID27 Protein involved 96.3 0.098 2.1E-06 43.2 10.9 143 43-191 476-633 (776)
424 PHA02790 Kelch-like protein; P 96.2 0.37 8E-06 40.8 14.6 107 45-156 318-428 (480)
425 PF10313 DUF2415: Uncharacteri 96.2 0.033 7.2E-07 29.1 5.2 30 123-152 2-34 (43)
426 KOG3630 Nuclear pore complex, 96.2 0.085 1.9E-06 47.6 10.6 145 77-223 101-260 (1405)
427 PF14761 HPS3_N: Hermansky-Pud 96.1 0.35 7.6E-06 35.4 15.7 141 47-189 29-213 (215)
428 PF15390 DUF4613: Domain of un 96.0 0.55 1.2E-05 39.8 14.1 147 34-191 19-187 (671)
429 KOG4499 Ca2+-binding protein R 96.0 0.41 8.9E-06 35.6 12.9 92 79-172 160-264 (310)
430 PF10168 Nup88: Nuclear pore c 96.0 0.64 1.4E-05 41.2 15.1 35 205-239 145-182 (717)
431 PF07995 GSDH: Glucose / Sorbo 95.9 0.22 4.8E-06 39.8 11.4 23 251-273 113-135 (331)
432 PF07569 Hira: TUP1-like enhan 95.8 0.072 1.6E-06 39.7 7.8 63 129-191 18-96 (219)
433 PF14655 RAB3GAP2_N: Rab3 GTPa 95.8 0.19 4.1E-06 41.2 10.7 94 22-118 295-407 (415)
434 PF08801 Nucleoporin_N: Nup133 95.8 0.96 2.1E-05 37.6 15.4 30 208-237 191-220 (422)
435 PF10313 DUF2415: Uncharacteri 95.7 0.078 1.7E-06 27.7 5.4 31 35-65 1-34 (43)
436 COG4590 ABC-type uncharacteriz 95.7 0.094 2E-06 42.7 8.2 160 30-193 216-389 (733)
437 KOG2377 Uncharacterized conser 95.7 0.28 6.1E-06 40.1 10.7 107 165-273 26-133 (657)
438 PLN00033 photosystem II stabil 95.6 1 2.2E-05 37.0 25.3 147 124-274 241-392 (398)
439 PF07569 Hira: TUP1-like enhan 95.5 0.14 3E-06 38.2 8.3 66 42-111 18-97 (219)
440 PF13449 Phytase-like: Esteras 95.5 0.98 2.1E-05 36.1 16.3 147 121-268 19-231 (326)
441 KOG2247 WD40 repeat-containing 95.5 0.0022 4.7E-08 52.0 -1.4 141 125-273 38-180 (615)
442 KOG1916 Nuclear protein, conta 95.3 0.03 6.5E-07 49.1 4.7 115 29-149 127-263 (1283)
443 TIGR02276 beta_rpt_yvtn 40-res 95.2 0.18 4E-06 26.0 6.0 30 216-245 1-31 (42)
444 COG5290 IkappaB kinase complex 95.0 1.2 2.7E-05 39.2 13.1 90 125-218 250-348 (1243)
445 TIGR03606 non_repeat_PQQ dehyd 95.0 1.7 3.6E-05 36.4 13.6 110 163-272 31-166 (454)
446 KOG1897 Damage-specific DNA bi 94.9 2.8 6.2E-05 37.9 21.9 212 48-267 686-929 (1096)
447 KOG2377 Uncharacterized conser 94.9 0.55 1.2E-05 38.5 10.2 133 132-269 32-171 (657)
448 TIGR03118 PEPCTERM_chp_1 conse 94.7 1.6 3.4E-05 34.1 23.4 218 37-261 25-307 (336)
449 PF08728 CRT10: CRT10; InterP 94.7 2.8 6.2E-05 37.0 15.7 111 124-235 103-245 (717)
450 KOG1983 Tomosyn and related SN 94.6 2.4 5.1E-05 39.4 14.8 30 35-64 36-65 (993)
451 KOG1900 Nuclear pore complex, 94.6 1 2.2E-05 41.9 12.1 137 100-237 98-273 (1311)
452 TIGR03547 muta_rot_YjhT mutatr 94.1 2.6 5.6E-05 34.0 20.1 42 229-273 291-332 (346)
453 PF03022 MRJP: Major royal jel 94.0 2.3 5E-05 33.3 18.0 169 101-269 34-253 (287)
454 PF14781 BBS2_N: Ciliary BBSom 94.0 1.2 2.7E-05 30.0 13.1 110 39-154 3-128 (136)
455 PF12657 TFIIIC_delta: Transcr 93.8 0.71 1.5E-05 33.0 8.2 31 122-152 86-122 (173)
456 KOG1916 Nuclear protein, conta 93.6 0.048 1E-06 48.0 2.2 129 36-168 182-340 (1283)
457 COG4257 Vgb Streptogramin lyas 93.5 2.7 5.9E-05 32.3 19.9 189 36-239 63-265 (353)
458 PF07250 Glyoxal_oxid_N: Glyox 93.4 2.3 5E-05 32.2 10.6 135 58-193 48-200 (243)
459 TIGR03074 PQQ_membr_DH membran 93.4 5.8 0.00013 35.8 20.9 104 88-194 194-348 (764)
460 PRK10115 protease 2; Provision 93.4 5.6 0.00012 35.6 23.9 112 78-191 128-256 (686)
461 PLN00033 photosystem II stabil 93.3 3.9 8.5E-05 33.7 21.6 143 80-233 242-396 (398)
462 PF12657 TFIIIC_delta: Transcr 93.3 0.96 2.1E-05 32.4 8.2 31 207-237 86-122 (173)
463 TIGR02276 beta_rpt_yvtn 40-res 93.2 0.57 1.2E-05 24.1 5.4 32 86-119 1-32 (42)
464 PF08728 CRT10: CRT10; InterP 93.2 3.1 6.6E-05 36.8 12.2 112 36-151 102-246 (717)
465 PF14781 BBS2_N: Ciliary BBSom 93.0 1.9 4.1E-05 29.1 11.5 109 127-240 4-129 (136)
466 COG1520 FOG: WD40-like repeat 93.0 4.2 9.1E-05 33.2 14.3 152 88-245 68-226 (370)
467 KOG4460 Nuclear pore complex, 92.8 1.5 3.2E-05 36.8 9.3 27 35-61 104-130 (741)
468 COG1506 DAP2 Dipeptidyl aminop 92.7 6.6 0.00014 34.7 18.1 170 73-269 56-233 (620)
469 PF14727 PHTB1_N: PTHB1 N-term 92.7 5 0.00011 33.3 23.0 141 45-190 36-204 (418)
470 PF11715 Nup160: Nucleoporin N 92.6 0.92 2E-05 39.2 8.7 71 86-159 156-256 (547)
471 COG5276 Uncharacterized conser 92.6 4 8.6E-05 31.8 20.5 150 78-240 88-245 (370)
472 COG4590 ABC-type uncharacteriz 92.5 1.1 2.3E-05 36.9 8.0 151 117-272 216-378 (733)
473 PF03022 MRJP: Major royal jel 92.5 4.3 9.3E-05 31.8 19.8 165 57-224 35-253 (287)
474 KOG2280 Vacuolar assembly/sort 92.5 7.2 0.00016 34.4 14.8 89 100-190 63-156 (829)
475 KOG1900 Nuclear pore complex, 92.4 9.9 0.00021 35.9 15.6 166 14-193 65-275 (1311)
476 KOG4460 Nuclear pore complex, 92.4 6.1 0.00013 33.4 12.9 37 208-244 167-206 (741)
477 PF10395 Utp8: Utp8 family; I 92.2 7.7 0.00017 34.1 16.7 156 34-190 129-305 (670)
478 COG4257 Vgb Streptogramin lyas 92.0 4.5 9.8E-05 31.2 16.4 153 78-238 63-220 (353)
479 TIGR03606 non_repeat_PQQ dehyd 92.0 6.6 0.00014 33.0 29.8 107 33-141 28-165 (454)
480 KOG3616 Selective LIM binding 92.0 6.5 0.00014 34.9 12.3 68 34-107 14-81 (1636)
481 PF11715 Nup160: Nucleoporin N 91.4 2.5 5.4E-05 36.6 9.9 71 44-117 156-256 (547)
482 PLN02153 epithiospecifier prot 90.9 7.2 0.00016 31.4 22.5 111 45-155 32-171 (341)
483 PF14761 HPS3_N: Hermansky-Pud 90.7 1.5 3.3E-05 32.2 6.7 50 219-272 29-80 (215)
484 PF13449 Phytase-like: Esteras 90.6 7.7 0.00017 31.1 20.9 99 124-223 87-231 (326)
485 TIGR03548 mutarot_permut cycli 90.1 8.3 0.00018 30.8 20.0 105 87-192 72-196 (323)
486 PF03088 Str_synth: Strictosid 90.1 3.2 6.9E-05 25.9 7.3 42 224-269 33-74 (89)
487 PLN02153 epithiospecifier prot 89.9 9.1 0.0002 30.8 17.3 110 45-156 85-230 (341)
488 PF01731 Arylesterase: Arylest 89.8 3 6.5E-05 25.9 6.5 30 207-236 54-84 (86)
489 PRK14131 N-acetylneuraminic ac 89.6 10 0.00023 31.0 19.7 40 230-272 314-353 (376)
490 PF07676 PD40: WD40-like Beta 89.0 1.9 4.1E-05 21.8 5.3 30 32-61 6-38 (39)
491 PF10214 Rrn6: RNA polymerase 88.7 19 0.0004 32.9 17.9 114 35-153 146-278 (765)
492 PF10214 Rrn6: RNA polymerase 88.7 19 0.00041 32.9 23.3 156 74-237 77-277 (765)
493 PF07676 PD40: WD40-like Beta 88.7 2 4.3E-05 21.7 4.6 31 76-106 8-38 (39)
494 PLN02193 nitrile-specifier pro 88.6 14 0.00031 31.4 23.6 191 46-241 176-415 (470)
495 smart00564 PQQ beta-propeller 88.3 1.6 3.5E-05 20.9 3.9 25 220-244 8-32 (33)
496 PF05935 Arylsulfotrans: Aryls 88.3 15 0.00032 31.3 16.1 169 54-245 126-310 (477)
497 PF03088 Str_synth: Strictosid 88.2 4.5 9.9E-05 25.2 8.0 42 139-180 33-75 (89)
498 KOG1898 Splicing factor 3b, su 88.2 22 0.00048 33.0 15.9 157 99-260 851-1028(1205)
499 TIGR03118 PEPCTERM_chp_1 conse 87.7 12 0.00026 29.4 19.7 191 79-274 25-272 (336)
500 KOG1520 Predicted alkaloid syn 87.6 14 0.0003 30.0 10.5 140 126-269 69-236 (376)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-48 Score=293.26 Aligned_cols=243 Identities=19% Similarity=0.306 Sum_probs=230.7
Q ss_pred ccccceeeccCCCcEEEEEEcCC--CCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCC
Q 023822 23 SMEVGMSFRDYNGRISSMDFHKS--SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD 100 (276)
Q Consensus 23 ~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d 100 (276)
+.....+|.||.+.|.++.|+|. +..||+|+.||++++|++++..++..+.+|...|..++|+|+|++|.+++. |
T Consensus 206 ~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Tasf---D 282 (459)
T KOG0272|consen 206 QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASF---D 282 (459)
T ss_pred CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeeccc---c
Confidence 34677899999999999999995 668999999999999999999999999999999999999999999999998 9
Q ss_pred CceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEE
Q 023822 101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAV 178 (276)
Q Consensus 101 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~ 178 (276)
.+-++||++++..+....+|...|.+++|+|||.++++|+.|..-+|||+|+++++..+ |...+..+.|+|+|..+++
T Consensus 283 ~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lAT 362 (459)
T KOG0272|consen 283 STWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLAT 362 (459)
T ss_pred cchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEee
Confidence 99999999999999889999999999999999999999999999999999999999999 7778899999999999999
Q ss_pred ee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECC-CCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEE
Q 023822 179 AF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE 256 (276)
Q Consensus 179 ~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 256 (276)
|+ |++++|||++..+. .+.+++|..-|+.+.|+| .|.+|++++.|++++||...+..+++.+. +|++.|.+
T Consensus 363 gs~Dnt~kVWDLR~r~~----ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa---GHe~kV~s 435 (459)
T KOG0272|consen 363 GSSDNTCKVWDLRMRSE----LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA---GHEGKVIS 435 (459)
T ss_pred cCCCCcEEEeeeccccc----ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc---CCccceEE
Confidence 88 99999999998765 888899999999999999 68999999999999999999999999999 89999999
Q ss_pred EEECCCCcEEEEecCCCCC
Q 023822 257 ASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 257 ~~~s~~g~~l~~~~~dg~v 275 (276)
+.++||+.++++++.|.++
T Consensus 436 ~Dis~d~~~i~t~s~DRT~ 454 (459)
T KOG0272|consen 436 LDISPDSQAIATSSFDRTI 454 (459)
T ss_pred EEeccCCceEEEeccCcee
Confidence 9999999999999999874
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-47 Score=285.21 Aligned_cols=243 Identities=23% Similarity=0.337 Sum_probs=216.8
Q ss_pred ceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822 27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 106 (276)
Q Consensus 27 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~ 106 (276)
...+.||.++|.|++|+|+|..|++|+.|.++|+||+.+..+..+.++|...|.+++|+||++.|++++. ||+|++|
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~---dg~I~lw 184 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSK---DGSIRLW 184 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhcccc---CCeEEEe
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EccCCce-eeeecccCcceEEEEecc-----CCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEE
Q 023822 107 SLHDNKY-LRYFKGHHDRVVSLSLCS-----SKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAV 178 (276)
Q Consensus 107 d~~~~~~-~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~ 178 (276)
|..++++ ...+.+|...|++++|.| ..++|++++.||.++|||+..+.++..+ |...+.|+.|-.+|.+..+
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySg 264 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSG 264 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEec
Confidence 9998875 457899999999999986 5679999999999999999999999888 6777889999888877777
Q ss_pred eeCCeEEEEecccCCC--------------------------------C-------------------------------
Q 023822 179 AFGGYIRMFDARKYEK--------------------------------G------------------------------- 195 (276)
Q Consensus 179 ~~d~~i~~~d~~~~~~--------------------------------~------------------------------- 195 (276)
+.|++|++|+...+.. .
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 7799999998765320 0
Q ss_pred ------------CeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCC
Q 023822 196 ------------PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 263 (276)
Q Consensus 196 ------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 263 (276)
...+..+.+|..-|+.+.||||++++|+++.|..|++|+.++|+.+..|+ +|-++|+.++|+.|.
T Consensus 345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR---GHv~~VYqvawsaDs 421 (480)
T KOG0271|consen 345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR---GHVAAVYQVAWSADS 421 (480)
T ss_pred CceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh---hccceeEEEEeccCc
Confidence 00112344577889999999999999999999999999999999999999 899999999999999
Q ss_pred cEEEEecCCCCC
Q 023822 264 MFVISGRVSPFS 275 (276)
Q Consensus 264 ~~l~~~~~dg~v 275 (276)
++|++||.|.+.
T Consensus 422 RLlVS~SkDsTL 433 (480)
T KOG0271|consen 422 RLLVSGSKDSTL 433 (480)
T ss_pred cEEEEcCCCceE
Confidence 999999999874
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-46 Score=281.94 Aligned_cols=242 Identities=23% Similarity=0.281 Sum_probs=224.7
Q ss_pred cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEecc--CCeEEEeccCCCCC
Q 023822 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH--PTTVIYSSKNGWDE 101 (276)
Q Consensus 24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~d~ 101 (276)
+.+...--+.+.+|..+.|+++++.|+||+.+|.++||+..+...+..+.+|...+.++.|+|. +..+++++. ||
T Consensus 165 ~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~---Dg 241 (459)
T KOG0272|consen 165 LELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASA---DG 241 (459)
T ss_pred hhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeecc---CC
Confidence 3333444567899999999999999999999999999999999999999999999999999997 568999998 99
Q ss_pred ceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEe
Q 023822 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVA 179 (276)
Q Consensus 102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~ 179 (276)
++++|++.+..++..+.+|...|..++|+|+|++|++++.|.+-++||++++...... |..++.+++|.++|.++++|
T Consensus 242 tvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tG 321 (459)
T KOG0272|consen 242 TVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATG 321 (459)
T ss_pred ceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeecc
Confidence 9999999999999999999999999999999999999999999999999998876665 66778999999999999999
Q ss_pred e-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEE
Q 023822 180 F-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 258 (276)
Q Consensus 180 ~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 258 (276)
+ |..-+|||++++++ +..+.+|..+|.+++|+|+|..||+|+.|++++|||++..+.+..+. +|.+-|+.+.
T Consensus 322 GlD~~~RvWDlRtgr~----im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip---AH~nlVS~Vk 394 (459)
T KOG0272|consen 322 GLDSLGRVWDLRTGRC----IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP---AHSNLVSQVK 394 (459)
T ss_pred CccchhheeecccCcE----EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc---cccchhhheE
Confidence 8 99999999999887 77888999999999999999999999999999999999999988888 8999999999
Q ss_pred ECC-CCcEEEEecCCCCC
Q 023822 259 FSP-EGMFVISGRVSPFS 275 (276)
Q Consensus 259 ~s~-~g~~l~~~~~dg~v 275 (276)
|+| .|.+|++++.|+++
T Consensus 395 ~~p~~g~fL~TasyD~t~ 412 (459)
T KOG0272|consen 395 YSPQEGYFLVTASYDNTV 412 (459)
T ss_pred ecccCCeEEEEcccCcce
Confidence 999 78999999999886
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.1e-44 Score=257.51 Aligned_cols=248 Identities=23% Similarity=0.343 Sum_probs=212.7
Q ss_pred ccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCC----
Q 023822 23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG---- 98 (276)
Q Consensus 23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---- 98 (276)
.++..++|+||.+.|.++.|++|.+.|++++.||.+.|||.-+...+..++.....|..++|+|.+++++.++-++
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 4566688999999999999999999999999999999999866555444444444444444444444444443311
Q ss_pred ----------------------------------------CCCceEEEEccCCceeeeecccCcceEEEEecc-CCCEEE
Q 023822 99 ----------------------------------------WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFI 137 (276)
Q Consensus 99 ----------------------------------------~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~ 137 (276)
.|.+..+||+++++.+..+.+|.+.|.+++++| +++.|+
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFv 203 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFV 203 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEE
Confidence 088999999999999999999999999999999 999999
Q ss_pred EeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEE
Q 023822 138 SGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKF 214 (276)
Q Consensus 138 ~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 214 (276)
+|+-|+..++||+|.+.+.+.+ |...++.+.|.|+|.-+++++ |++.++||+|..+. +.++.......+|++++|
T Consensus 204 Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~--~a~ys~~~~~~gitSv~F 281 (343)
T KOG0286|consen 204 SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE--LAVYSHDSIICGITSVAF 281 (343)
T ss_pred ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE--EeeeccCcccCCceeEEE
Confidence 9999999999999999999999 667799999999999999998 79999999998553 445555566679999999
Q ss_pred CCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 215 SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 215 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
|..|++|++|..|..+.+||.-.++....+. +|++.|.++..+|||.-|++||+|.++
T Consensus 282 S~SGRlLfagy~d~~c~vWDtlk~e~vg~L~---GHeNRvScl~~s~DG~av~TgSWDs~l 339 (343)
T KOG0286|consen 282 SKSGRLLFAGYDDFTCNVWDTLKGERVGVLA---GHENRVSCLGVSPDGMAVATGSWDSTL 339 (343)
T ss_pred cccccEEEeeecCCceeEeeccccceEEEee---ccCCeeEEEEECCCCcEEEecchhHhe
Confidence 9999999999999999999999999999999 899999999999999999999999875
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-45 Score=273.14 Aligned_cols=242 Identities=20% Similarity=0.275 Sum_probs=214.0
Q ss_pred ccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeee-eeeeeeeeceEEEEEec-----cCCeEEEecc
Q 023822 23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-KTINSKKYGVDLVCFTS-----HPTTVIYSSK 96 (276)
Q Consensus 23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~~~~~ 96 (276)
.-.+..+.++|...|.|++|+|||+.||+|+.||+|++||.++|+++ ..+.+|...|++++|.| ..+++++++.
T Consensus 146 TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~sk 225 (480)
T KOG0271|consen 146 TETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSK 225 (480)
T ss_pred CCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccC
Confidence 34567889999999999999999999999999999999999988765 66899999999999976 4578899888
Q ss_pred CCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-----------------
Q 023822 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL----------------- 159 (276)
Q Consensus 97 ~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----------------- 159 (276)
||.++|||+..++++..+.+|+.+|+|+.|--+| ++++++.|++|++|+...+.+...+
T Consensus 226 ---Dg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~ 301 (480)
T KOG0271|consen 226 ---DGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV 301 (480)
T ss_pred ---CCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh
Confidence 9999999999999999999999999999996554 8999999999999987653311110
Q ss_pred ----------------------------------------------------------------eecCCCeeEecCCCcE
Q 023822 160 ----------------------------------------------------------------RVQGRPAAAYDDQGLV 175 (276)
Q Consensus 160 ----------------------------------------------------------------~~~~~~~~~~~~~~~~ 175 (276)
|..-++.+.|+|++++
T Consensus 302 LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~ 381 (480)
T KOG0271|consen 302 LRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRY 381 (480)
T ss_pred hhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccE
Confidence 1222457899999999
Q ss_pred EEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCce
Q 023822 176 FAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST 254 (276)
Q Consensus 176 l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 254 (276)
+++++ |..|++||.++++. +..+.+|-.+|..++|+.|.++|++|+.|.++++|++++.++...+. +|...|
T Consensus 382 IASaSFDkSVkLW~g~tGk~----lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp---Gh~DEV 454 (480)
T KOG0271|consen 382 IASASFDKSVKLWDGRTGKF----LASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP---GHADEV 454 (480)
T ss_pred EEEeecccceeeeeCCCcch----hhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC---CCCceE
Confidence 99998 99999999999886 77888999999999999999999999999999999999999988888 899999
Q ss_pred EEEEECCCCcEEEEecCCCCC
Q 023822 255 LEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 255 ~~~~~s~~g~~l~~~~~dg~v 275 (276)
.++.|+|||..+++|+.|..+
T Consensus 455 f~vDwspDG~rV~sggkdkv~ 475 (480)
T KOG0271|consen 455 FAVDWSPDGQRVASGGKDKVL 475 (480)
T ss_pred EEEEecCCCceeecCCCceEE
Confidence 999999999999999999754
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1e-41 Score=243.67 Aligned_cols=248 Identities=15% Similarity=0.217 Sum_probs=211.4
Q ss_pred HHhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCC
Q 023822 19 EILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG 98 (276)
Q Consensus 19 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 98 (276)
+...-..+++.++||...|..++.++||++.++++.|+++++||+.+++..+.|.+|...|.+++|++|++.+++++.
T Consensus 48 dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSr-- 125 (315)
T KOG0279|consen 48 DDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSR-- 125 (315)
T ss_pred CccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCC--
Confidence 344455678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEccCCceeeeecc-cCcceEEEEeccC--CCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCC
Q 023822 99 WDESLRLLSLHDNKYLRYFKG-HHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQG 173 (276)
Q Consensus 99 ~d~~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~ 173 (276)
|.+|++|++........... +.+.|.|+.|+|+ ..+|++++.|++|++||+++.+....+ +.+.++.++++|||
T Consensus 126 -DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDG 204 (315)
T KOG0279|consen 126 -DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDG 204 (315)
T ss_pred -cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCC
Confidence 99999999876544333332 3789999999998 669999999999999999999988887 56668899999999
Q ss_pred cEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCC-C--
Q 023822 174 LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-V-- 249 (276)
Q Consensus 174 ~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~-- 249 (276)
.+.+.|. ||.+.+||++..+. .+.+ .+...|.+++|+|+...|+.+. +-.|+|||+.++.++..+.... +
T Consensus 205 slcasGgkdg~~~LwdL~~~k~----lysl-~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s 278 (315)
T KOG0279|consen 205 SLCASGGKDGEAMLWDLNEGKN----LYSL-EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPS 278 (315)
T ss_pred CEEecCCCCceEEEEEccCCce----eEec-cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccc
Confidence 9999988 99999999998775 4443 4667899999999976666554 4569999999999888776321 1
Q ss_pred ---CCCceEEEEECCCCcEEEEecCCCCC
Q 023822 250 ---SRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 250 ---~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
......+++|++||..|++|-.|+.+
T Consensus 279 ~~~~~~~clslaws~dG~tLf~g~td~~i 307 (315)
T KOG0279|consen 279 SKAGDPICLSLAWSADGQTLFAGYTDNVI 307 (315)
T ss_pred cccCCcEEEEEEEcCCCcEEEeeecCCcE
Confidence 13346789999999999999998864
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-40 Score=237.66 Aligned_cols=240 Identities=19% Similarity=0.269 Sum_probs=212.2
Q ss_pred ccccceeeccCCCcEEEEEEcCC-CCEEEEeecCCeEEEEEcc-----CCeeeeeeeeeeeceEEEEEeccCCeEEEecc
Q 023822 23 SMEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVT-----AATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96 (276)
Q Consensus 23 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 96 (276)
.+....++++|++.|+.++..+. .+.+++++.|.++.+|++. .|.+++.+.+|...|..+..++++++.++++.
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW 83 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccc
Confidence 45566789999999999999885 5688999999999999875 46788999999999999999999999999997
Q ss_pred CCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe---ecCCCeeEecCC-
Q 023822 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR---VQGRPAAAYDDQ- 172 (276)
Q Consensus 97 ~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~- 172 (276)
|+.+++||+.+++..+.|.+|...|.+++|++|.+.+++|+.|.+|++|++.......... ..-+.++.|+|.
T Consensus 84 ---D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 84 ---DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred ---cceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC
Confidence 9999999999999999999999999999999999999999999999999987665443332 344789999998
Q ss_pred -CcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCC
Q 023822 173 -GLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS 250 (276)
Q Consensus 173 -~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 250 (276)
..+++.++ |+++++||+++.+. ...+.+|...++.+++||||.+.++|+.||.+.+||++.++.+..+. +
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~~~l----~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~----a 232 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRNCQL----RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE----A 232 (315)
T ss_pred CCcEEEEccCCceEEEEccCCcch----hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc----C
Confidence 55666665 99999999998765 55677899999999999999999999999999999999999988886 8
Q ss_pred CCceEEEEECCCCcEEEEecCCC
Q 023822 251 RNSTLEASFSPEGMFVISGRVSP 273 (276)
Q Consensus 251 ~~~v~~~~~s~~g~~l~~~~~dg 273 (276)
...|.+++|+|+.-+|+.+...+
T Consensus 233 ~~~v~sl~fspnrywL~~at~~s 255 (315)
T KOG0279|consen 233 FDIVNSLCFSPNRYWLCAATATS 255 (315)
T ss_pred CCeEeeEEecCCceeEeeccCCc
Confidence 89999999999988888776543
No 8
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.2e-41 Score=272.02 Aligned_cols=232 Identities=21% Similarity=0.295 Sum_probs=215.5
Q ss_pred CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC-------------------------------eeeeeeeeeeeceEEE
Q 023822 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAA-------------------------------TCLKTINSKKYGVDLV 82 (276)
Q Consensus 34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-------------------------------~~~~~~~~~~~~v~~~ 82 (276)
...++|..|++|+..||.|-.|..|++|.+... ....++.+|.++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 467999999999999999999999999998631 1233467899999999
Q ss_pred EEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--e
Q 023822 83 CFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--R 160 (276)
Q Consensus 83 ~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~ 160 (276)
.|+|+.++|++++. |+++++|.+.+...+..+++|..+|+++.|+|.|-+||+++.|++.++|......+.+.+ |
T Consensus 458 sFsPd~rfLlScSE---D~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifagh 534 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSE---DSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGH 534 (707)
T ss_pred eecccccceeeccC---CcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccc
Confidence 99999999999999 999999999999999999999999999999999999999999999999999998888888 7
Q ss_pred ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCc
Q 023822 161 VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT 239 (276)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 239 (276)
...+.|+.|+|+..++++|+ |.++++||+.++.. +..+.+|..+|.+++|||+|++|++|+.||.|.+||+.+++
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~----VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS----VRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS 610 (707)
T ss_pred ccccceEEECCcccccccCCCCceEEEEEcCCCcE----EEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc
Confidence 78899999999999999998 99999999998776 66678999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 240 LLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 240 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
++..+. +|.+.|.++.|+.||..||+|+.|..|
T Consensus 611 ~v~~l~---~Ht~ti~SlsFS~dg~vLasgg~DnsV 643 (707)
T KOG0263|consen 611 LVKQLK---GHTGTIYSLSFSRDGNVLASGGADNSV 643 (707)
T ss_pred chhhhh---cccCceeEEEEecCCCEEEecCCCCeE
Confidence 999999 789999999999999999999999875
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.1e-39 Score=229.85 Aligned_cols=245 Identities=14% Similarity=0.217 Sum_probs=213.4
Q ss_pred ccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe--eeeeeeeeeeceEEEEEeccCCeEEEeccCCCC
Q 023822 23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD 100 (276)
Q Consensus 23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d 100 (276)
+....++++...+.|+.+...|+++.||+++.. .||+||+.+++ ++.++.+|...|+.+.|..+|+.++++++ |
T Consensus 29 tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgse---D 104 (311)
T KOG0315|consen 29 TGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSE---D 104 (311)
T ss_pred cCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCC---C
Confidence 345667777778899999999999999998764 69999998764 68999999999999999999999999999 9
Q ss_pred CceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCCcEEE
Q 023822 101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLVFA 177 (276)
Q Consensus 101 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~l~ 177 (276)
|+++|||++...+.+.++ |..+|+++..+|+...|++|..+|.|++||+....+...+ ....+..+...|+|..++
T Consensus 105 gt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~ 183 (311)
T KOG0315|consen 105 GTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLA 183 (311)
T ss_pred ceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEE
Confidence 999999999977666665 7899999999999999999999999999999998777766 334567899999999999
Q ss_pred Eee-CCeEEEEecccCCC--CCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCC-cEEEEeecCCCCCCc
Q 023822 178 VAF-GGYIRMFDARKYEK--GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNS 253 (276)
Q Consensus 178 ~~~-d~~i~~~d~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~ 253 (276)
+.. .|+.++|++-.... ....+..+..|...+..+.+||++++||++|.|.+++||+..+. +.-..+. +|...
T Consensus 184 a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~---gh~rW 260 (311)
T KOG0315|consen 184 AANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT---GHQRW 260 (311)
T ss_pred EecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee---cCCce
Confidence 888 69999999876432 23335567789999999999999999999999999999999887 4445555 78899
Q ss_pred eEEEEECCCCcEEEEecCCCCC
Q 023822 254 TLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 254 v~~~~~s~~g~~l~~~~~dg~v 275 (276)
+++.+||.||+||++|+.|+++
T Consensus 261 vWdc~FS~dg~YlvTassd~~~ 282 (311)
T KOG0315|consen 261 VWDCAFSADGEYLVTASSDHTA 282 (311)
T ss_pred EEeeeeccCccEEEecCCCCce
Confidence 9999999999999999999875
No 10
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-39 Score=232.74 Aligned_cols=253 Identities=49% Similarity=0.826 Sum_probs=230.8
Q ss_pred hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101 (276)
Q Consensus 22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~ 101 (276)
.++++.+.++.-.+.|+++.|+++|..|++++.|.+++|||..+++.+.++..++..+..++|......++.++. ..|.
T Consensus 2 ~s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt-k~d~ 80 (311)
T KOG1446|consen 2 RSFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST-KEDD 80 (311)
T ss_pred cccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC-CCCC
Confidence 456777888888899999999999999999999999999999999999999999999999999988887777765 3489
Q ss_pred ceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEeeC
Q 023822 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG 181 (276)
Q Consensus 102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d 181 (276)
+|+..++.+++.++.+.+|...|.+++.+|-+..+++++.|++|++||+|..++...++..+.+.++|+|+|.++|++.+
T Consensus 81 tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 81 TIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANG 160 (311)
T ss_pred ceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -CeEEEEecccCCCCCeeeeeec-CCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEE
Q 023822 182 -GYIRMFDARKYEKGPFDIFSVG-GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 259 (276)
Q Consensus 182 -~~i~~~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 259 (276)
..|++||+|.....|+..+.+. ....+.+.+.|||||++|+.+...+.+++.|.-+|..+..+..++....-..+.+|
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f 240 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF 240 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence 4999999999988998888876 55678999999999999999999999999999999999999865544434467899
Q ss_pred CCCCcEEEEecCCCCC
Q 023822 260 SPEGMFVISGRVSPFS 275 (276)
Q Consensus 260 s~~g~~l~~~~~dg~v 275 (276)
+||++++++|+.||++
T Consensus 241 tPds~Fvl~gs~dg~i 256 (311)
T KOG1446|consen 241 TPDSKFVLSGSDDGTI 256 (311)
T ss_pred CCCCcEEEEecCCCcE
Confidence 9999999999999985
No 11
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.8e-40 Score=265.70 Aligned_cols=234 Identities=23% Similarity=0.355 Sum_probs=211.2
Q ss_pred cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822 26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 105 (276)
Q Consensus 26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~ 105 (276)
..+++.||.++|..+.|+|+.++|+++++|+++|+|.+.+..++..+++|..+|+++.|+|.|-++++++. |++-++
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~---D~tArL 519 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASH---DQTARL 519 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCC---Cceeee
Confidence 34568899999999999999999999999999999999999999999999999999999999999999988 999999
Q ss_pred EEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CC
Q 023822 106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GG 182 (276)
Q Consensus 106 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~ 182 (276)
|......+++.+.+|.+.|.|+.|+|+.+++++|+.|.++++||+.++..++.+ |..++.+++|+|+|++|+++. |+
T Consensus 520 Ws~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~ 599 (707)
T KOG0263|consen 520 WSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDG 599 (707)
T ss_pred eecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCC
Confidence 999999999999999999999999999999999999999999999999999999 667788999999999999999 89
Q ss_pred eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCc-----------------------
Q 023822 183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT----------------------- 239 (276)
Q Consensus 183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----------------------- 239 (276)
.|.+||+.++.. +..+.+|.+.|.++.|+.+|..||+|+.|++|++||+..-.
T Consensus 600 ~I~iWDl~~~~~----v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (707)
T KOG0263|consen 600 LIKIWDLANGSL----VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASS 675 (707)
T ss_pred cEEEEEcCCCcc----hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCc
Confidence 999999998775 66777889999999999999999999999999999975322
Q ss_pred -EEEEeecCCCCCCceEEEEECCCCcEEEEe
Q 023822 240 -LLSTYNVKPVSRNSTLEASFSPEGMFVISG 269 (276)
Q Consensus 240 -~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 269 (276)
++..+. .-..+|..+.|..-+-.|+.|
T Consensus 676 ~llgs~~---tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 676 LLLGSFY---TKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred ceeeeee---ecCceEEEEEEeccceeEEec
Confidence 223333 234578889998877556555
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.1e-39 Score=246.90 Aligned_cols=239 Identities=18% Similarity=0.284 Sum_probs=215.4
Q ss_pred ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822 25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104 (276)
Q Consensus 25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~ 104 (276)
....+|..|++||.++.|+.+|++|++++.|+++.+||..++...+.+..|..+...+.|-.+ ..+++++. |+.|+
T Consensus 267 ~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~t---d~~i~ 342 (524)
T KOG0273|consen 267 NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSST---DGCIH 342 (524)
T ss_pred hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCC---CceEE
Confidence 445678889999999999999999999999999999999999999999999988788999754 45666666 99999
Q ss_pred EEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCC---------
Q 023822 105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQG--------- 173 (276)
Q Consensus 105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~--------- 173 (276)
++.+...+++.++.+|.++|.++.|+|.+.+|++++.|++++||.+....+...+ |...+..+.|+|.+
T Consensus 343 V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~ 422 (524)
T KOG0273|consen 343 VCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMN 422 (524)
T ss_pred EEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCC
Confidence 9999999999999999999999999999999999999999999999988888877 55567888888864
Q ss_pred -cEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCC
Q 023822 174 -LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN 252 (276)
Q Consensus 174 -~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 252 (276)
.++.++.|++|++||+..+.. ++.+..|..+|.+++|+|+|+|+|+|+.||.|.+|++++++..+.+. ..+
T Consensus 423 ~~l~sas~dstV~lwdv~~gv~----i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~----~~~ 494 (524)
T KOG0273|consen 423 LMLASASFDSTVKLWDVESGVP----IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ----GTG 494 (524)
T ss_pred ceEEEeecCCeEEEEEccCCce----eEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec----CCC
Confidence 355566699999999998765 88888999999999999999999999999999999999999999998 567
Q ss_pred ceEEEEECCCCcEEEEecCCCCC
Q 023822 253 STLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 253 ~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
.|..++|+.+|.+|..+-.||-|
T Consensus 495 ~Ifel~Wn~~G~kl~~~~sd~~v 517 (524)
T KOG0273|consen 495 GIFELCWNAAGDKLGACASDGSV 517 (524)
T ss_pred eEEEEEEcCCCCEEEEEecCCCc
Confidence 79999999999999999888865
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.4e-41 Score=254.41 Aligned_cols=242 Identities=16% Similarity=0.276 Sum_probs=215.5
Q ss_pred cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeee-eceEEEEEeccCCeEEEeccCCCCCc
Q 023822 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDES 102 (276)
Q Consensus 24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~d~~ 102 (276)
+.....++.|+.+|.++.|++++.++++|+.+|.|++|+.. ...+..+..|. ..|++++|+|+...+++++. |++
T Consensus 128 fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~Sd---Dg~ 203 (464)
T KOG0284|consen 128 FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSD---DGT 203 (464)
T ss_pred eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEecC---CCe
Confidence 44445578999999999999999999999999999999975 44455555554 89999999999999999998 999
Q ss_pred eEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee
Q 023822 103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF 180 (276)
Q Consensus 103 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~ 180 (276)
|+|||....+....+.+|.-.|.+++|+|...++++++.|..|++||.+++.++.++ |.+.+..+.|++++.+|++++
T Consensus 204 ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~s 283 (464)
T KOG0284|consen 204 IKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGS 283 (464)
T ss_pred EEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEcc
Confidence 999999999998999999999999999999999999999999999999999999999 555677899999999998888
Q ss_pred -CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC-CcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEE
Q 023822 181 -GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 258 (276)
Q Consensus 181 -d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 258 (276)
|..+++||+++.+. ++...+|...+++++|+|- ..+|.+|+.||.|..|.+...+++..+.. +|...|++++
T Consensus 284 kD~~~kv~DiR~mkE----l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~--AHd~~iwsl~ 357 (464)
T KOG0284|consen 284 KDQSCKVFDIRTMKE----LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP--AHDGEIWSLA 357 (464)
T ss_pred CCceEEEEehhHhHH----HHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCc--ccccceeeee
Confidence 99999999997665 7778899999999999995 56788899999999999986666666554 7999999999
Q ss_pred ECCCCcEEEEecCCCCC
Q 023822 259 FSPEGMFVISGRVSPFS 275 (276)
Q Consensus 259 ~s~~g~~l~~~~~dg~v 275 (276)
|+|=|..|++|+.|.++
T Consensus 358 ~hPlGhil~tgsnd~t~ 374 (464)
T KOG0284|consen 358 YHPLGHILATGSNDRTV 374 (464)
T ss_pred ccccceeEeecCCCcce
Confidence 99999999999999875
No 14
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.8e-40 Score=229.00 Aligned_cols=240 Identities=20% Similarity=0.295 Sum_probs=205.0
Q ss_pred cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822 26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 105 (276)
Q Consensus 26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~ 105 (276)
....+..|+++|..+.|+-+|++.++++.|.+|++|+...+.+++++.+|...|..++.+.|+..+++++. |..+.+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~Gg---Dk~v~v 85 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGG---DKAVQV 85 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCC---CceEEE
Confidence 45667899999999999999999999999999999999999999999999999999999999999999988 999999
Q ss_pred EEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc--eeeeeEeecCCCeeEecCCCcEEEEee-CC
Q 023822 106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE--KCQGLLRVQGRPAAAYDDQGLVFAVAF-GG 182 (276)
Q Consensus 106 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~-d~ 182 (276)
||+++++..+.+.+|.+.|+.++|+.+...+++|+.|.++++||.++. ++++.+....-....+.-.+..+++++ ||
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DG 165 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDG 165 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCC
Confidence 999999999999999999999999999999999999999999999865 556666332222333333444555555 99
Q ss_pred eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCC
Q 023822 183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 262 (276)
Q Consensus 183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 262 (276)
+++.||++.+.. .... -..+|+++.|+++++..++++.|+++++.|-.+|++++.++.+. ....-...+++..
T Consensus 166 tvRtydiR~G~l----~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhk-n~eykldc~l~qs 238 (307)
T KOG0316|consen 166 TVRTYDIRKGTL----SSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHK-NMEYKLDCCLNQS 238 (307)
T ss_pred cEEEEEeeccee----ehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccc-cceeeeeeeeccc
Confidence 999999998764 2222 33489999999999999999999999999999999999999432 2233455678888
Q ss_pred CcEEEEecCCCCC
Q 023822 263 GMFVISGRVSPFS 275 (276)
Q Consensus 263 g~~l~~~~~dg~v 275 (276)
...+++|++||.|
T Consensus 239 dthV~sgSEDG~V 251 (307)
T KOG0316|consen 239 DTHVFSGSEDGKV 251 (307)
T ss_pred ceeEEeccCCceE
Confidence 8999999999986
No 15
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.3e-39 Score=239.26 Aligned_cols=242 Identities=17% Similarity=0.258 Sum_probs=221.1
Q ss_pred hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101 (276)
Q Consensus 22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~ 101 (276)
..++..+.+++|.+.|.|+++.|-+++|++|+.|++++|||+.+|+...++.+|...|..+++++...++++++. |+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ge---dk 215 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE---DK 215 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecC---CC
Confidence 456778889999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred ceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCC-CcEEEE
Q 023822 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQ-GLVFAV 178 (276)
Q Consensus 102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~-~~~l~~ 178 (276)
.|+-||++.++.++.+.+|-..|.+++.+|.-+.|++|++|.++++||+|+...+..+ |..++..+.+.|- .+++.+
T Consensus 216 ~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~ 295 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITG 295 (460)
T ss_pred eeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEe
Confidence 9999999999999999999999999999999999999999999999999999999988 6666778888774 466666
Q ss_pred eeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEE
Q 023822 179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 258 (276)
Q Consensus 179 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 258 (276)
+.|++|++||++.++. ...+..|...+.+++.+|....+|+++.| .|+-|++..|..++.+. +|..-|++++
T Consensus 296 S~D~tvrlWDl~agkt----~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nls---gh~~iintl~ 367 (460)
T KOG0285|consen 296 SHDSTVRLWDLRAGKT----MITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLS---GHNAIINTLS 367 (460)
T ss_pred cCCceEEEeeeccCce----eEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccc---cccceeeeee
Confidence 6699999999999876 67778899999999999999989999888 49999999999999887 7999999999
Q ss_pred ECCCCcEEEEecCCCCC
Q 023822 259 FSPEGMFVISGRVSPFS 275 (276)
Q Consensus 259 ~s~~g~~l~~~~~dg~v 275 (276)
...|| ++++|+++|.+
T Consensus 368 ~nsD~-v~~~G~dng~~ 383 (460)
T KOG0285|consen 368 VNSDG-VLVSGGDNGSI 383 (460)
T ss_pred eccCc-eEEEcCCceEE
Confidence 98886 67888888864
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-39 Score=239.62 Aligned_cols=241 Identities=21% Similarity=0.332 Sum_probs=221.9
Q ss_pred ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC-CeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822 25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (276)
Q Consensus 25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i 103 (276)
+....++||.+.|..++|+..|++|++++.|=.+++||.++ .+++..+.+|+..|.++.|-|.+.++++++. |.+|
T Consensus 141 ~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~sr---D~ti 217 (406)
T KOG0295|consen 141 ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSR---DNTI 217 (406)
T ss_pred hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeeccc---ccce
Confidence 44678999999999999999999999999999999999986 5677888899999999999999999999999 9999
Q ss_pred EEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCC---------
Q 023822 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQ--------- 172 (276)
Q Consensus 104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~--------- 172 (276)
+.|++.++-++.++.+|...|..++.+.||.++++++.|.+|++|-+.++++...+ +.+++.+++|-|.
T Consensus 218 k~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~a 297 (406)
T KOG0295|consen 218 KAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEA 297 (406)
T ss_pred eEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhc
Confidence 99999999999999999999999999999999999999999999999999777666 6677788888652
Q ss_pred ------CcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822 173 ------GLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN 245 (276)
Q Consensus 173 ------~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 245 (276)
+.++..++ |++|++||+.++.. ++.+.+|...|..++|+|.|+||+++.+|+++++||+++++++..+.
T Consensus 298 t~~~~~~~~l~s~SrDktIk~wdv~tg~c----L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 298 TGSTNGGQVLGSGSRDKTIKIWDVSTGMC----LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred cCCCCCccEEEeecccceEEEEeccCCeE----EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence 25777777 99999999999876 89999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 246 VKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 246 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
.|..-++++.|+.+-.++++|+-|-++
T Consensus 374 ---ah~hfvt~lDfh~~~p~VvTGsVdqt~ 400 (406)
T KOG0295|consen 374 ---AHEHFVTSLDFHKTAPYVVTGSVDQTV 400 (406)
T ss_pred ---CCcceeEEEecCCCCceEEecccccee
Confidence 788999999999999999999988664
No 17
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.3e-38 Score=229.91 Aligned_cols=242 Identities=19% Similarity=0.246 Sum_probs=197.4
Q ss_pred cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEcc-CCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCc
Q 023822 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT-AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES 102 (276)
Q Consensus 24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~ 102 (276)
..+...+.+|.+.|+.+.|+|+|..||+|+.|..|.+|+.. ..+....+++|.+.|..+.|.++++.+++++. |.+
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gt---Dk~ 113 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGT---DKT 113 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecC---Cce
Confidence 45667788999999999999999999999999999999954 44556778899999999999999999999999 999
Q ss_pred eEEEEccCCceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee
Q 023822 103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF 180 (276)
Q Consensus 103 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~ 180 (276)
++.||+++++..+.++.|.+.++++.-+.-|. ++.+++.|+++++||+|+...++++ ...+..++.|..++.-+.++.
T Consensus 114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sgg 193 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGG 193 (338)
T ss_pred EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeecc
Confidence 99999999999999999999999998544444 7788999999999999999988887 445677899988876555555
Q ss_pred -CCeEEEEecccCCCCCeeeeeecCCCCCceE------------------------------------------------
Q 023822 181 -GGYIRMFDARKYEKGPFDIFSVGGDISDANV------------------------------------------------ 211 (276)
Q Consensus 181 -d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~------------------------------------------------ 211 (276)
|+.|++||++..+. .+.+.+|..+|+.
T Consensus 194 Idn~ikvWd~r~~d~----~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 194 IDNDIKVWDLRKNDG----LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred ccCceeeeccccCcc----eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 99999999987553 4444444444444
Q ss_pred --EEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 212 --VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 212 --~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
++|+|+++++.+|+.|..+++||......+..+. +|.+.|+.++|+|...+|.+++.|.++
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp---Gh~gsvn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP---GHYGSVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred ceeeccCCCCccccccccceEEEeecccccEEEEcC---CcceeEEEeeecCCCcEEEEeccCcee
Confidence 4555555555566666666666655555665555 899999999999999999999999875
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-38 Score=242.78 Aligned_cols=230 Identities=16% Similarity=0.287 Sum_probs=210.7
Q ss_pred CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCce
Q 023822 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY 113 (276)
Q Consensus 34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~ 113 (276)
...|++++|+.+|..||+|+.||.+++|+. +|..+.++..|+++|.++.|+..|.+|++++. |+++.+||..++..
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~v---D~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGV---DGTTILWDAHTGTV 310 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccC---CccEEEEeccCceE
Confidence 357999999999999999999999999995 68889999999999999999999999999998 99999999999999
Q ss_pred eeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEEEEecc
Q 023822 114 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDAR 190 (276)
Q Consensus 114 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~ 190 (276)
.+.+.-|..+-..+.|-.+ ..|++++.|+.|+++.+....++.++ |...+.++.|+|.+.+|++++ |+++++|...
T Consensus 311 ~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~ 389 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMG 389 (524)
T ss_pred EEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecC
Confidence 9999989888788899754 46999999999999999999998888 677799999999999999988 8999999987
Q ss_pred cCCCCCeeeeeecCCCCCceEEEECCCC---------cEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECC
Q 023822 191 KYEKGPFDIFSVGGDISDANVVKFSNDG---------RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP 261 (276)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~ 261 (276)
.... ...+..|...|..+.|+|.| ..+++++.|++|++||+..+.++..+. .|..+|.+++|+|
T Consensus 390 ~~~~----~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~---kH~~pVysvafS~ 462 (524)
T KOG0273|consen 390 QSNS----VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM---KHQEPVYSVAFSP 462 (524)
T ss_pred CCcc----hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec---cCCCceEEEEecC
Confidence 6554 66778899999999999965 468999999999999999999999998 6999999999999
Q ss_pred CCcEEEEecCCCCC
Q 023822 262 EGMFVISGRVSPFS 275 (276)
Q Consensus 262 ~g~~l~~~~~dg~v 275 (276)
+|+|||+|+.||.|
T Consensus 463 ~g~ylAsGs~dg~V 476 (524)
T KOG0273|consen 463 NGRYLASGSLDGCV 476 (524)
T ss_pred CCcEEEecCCCCee
Confidence 99999999999975
No 19
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.5e-39 Score=236.98 Aligned_cols=246 Identities=17% Similarity=0.238 Sum_probs=222.6
Q ss_pred HhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCC
Q 023822 20 ILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW 99 (276)
Q Consensus 20 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 99 (276)
-+........+.+|..+|+.+-|+|+-..++++++|++|++||..+++....+++|...+..++|...|+++++++.
T Consensus 94 wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs--- 170 (406)
T KOG0295|consen 94 WIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSS--- 170 (406)
T ss_pred cCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCC---
Confidence 33444566778899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceEEEEccC-CceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEE
Q 023822 100 DESLRLLSLHD-NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVF 176 (276)
Q Consensus 100 d~~i~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l 176 (276)
|-.+++||..+ .++++.+.+|.-.|.+++|-|.|.+++++++|.+|+.|++.++.+++++ +..-+..+..+.||.++
T Consensus 171 Dl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~ 250 (406)
T KOG0295|consen 171 DLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTII 250 (406)
T ss_pred ccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEE
Confidence 88899999987 5677788899999999999999999999999999999999999999999 44457789999999999
Q ss_pred EEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC---------------CcEEEEeecCCcEEEEECCCCcE
Q 023822 177 AVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND---------------GRLMLLTTMEGHIHVLDSFRGTL 240 (276)
Q Consensus 177 ~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~l~~~~~dg~i~i~d~~~~~~ 240 (276)
++++ |.++++|-+.+.+. ...+..|..++-+++|-|. ++++.+++.|++|++||+.++.+
T Consensus 251 As~s~dqtl~vW~~~t~~~----k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c 326 (406)
T KOG0295|consen 251 ASCSNDQTLRVWVVATKQC----KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC 326 (406)
T ss_pred EecCCCceEEEEEeccchh----hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE
Confidence 9998 89999999998754 3455678888999998762 35899999999999999999999
Q ss_pred EEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 241 LSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
+.++. +|...|..++|+|.|+||+++.+|+++
T Consensus 327 L~tL~---ghdnwVr~~af~p~Gkyi~ScaDDktl 358 (406)
T KOG0295|consen 327 LFTLV---GHDNWVRGVAFSPGGKYILSCADDKTL 358 (406)
T ss_pred EEEEe---cccceeeeeEEcCCCeEEEEEecCCcE
Confidence 99999 899999999999999999999999975
No 20
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.6e-37 Score=237.75 Aligned_cols=247 Identities=17% Similarity=0.253 Sum_probs=208.4
Q ss_pred hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeee---eeeeceEEEEEeccCCeEEEeccCC
Q 023822 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHPTTVIYSSKNG 98 (276)
Q Consensus 22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~ 98 (276)
++++...+++.|..-|+|++|+|||+++|+++.||.+.+||-.+++.+..+. +|++.|.+++|+||++.+++++.
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa-- 255 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA-- 255 (603)
T ss_pred CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC--
Confidence 4577888899999999999999999999999999999999999999999997 89999999999999999999998
Q ss_pred CCCceEEEEccCCceeee-------------------------------------------ecccCcceEEEEeccCCCE
Q 023822 99 WDESLRLLSLHDNKYLRY-------------------------------------------FKGHHDRVVSLSLCSSKDC 135 (276)
Q Consensus 99 ~d~~i~~~d~~~~~~~~~-------------------------------------------~~~~~~~i~~~~~~~~~~~ 135 (276)
|.++++||+.+++++++ +.+|...|+++..+|++++
T Consensus 256 -Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~ 334 (603)
T KOG0318|consen 256 -DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT 334 (603)
T ss_pred -CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE
Confidence 99999999987544332 4579999999999999999
Q ss_pred EEEeeCCCeEEEEeccCceeeee-------------------------------E-------------------------
Q 023822 136 FISGSLDRTVLLWDQRAEKCQGL-------------------------------L------------------------- 159 (276)
Q Consensus 136 l~~~~~d~~i~iwd~~~~~~~~~-------------------------------~------------------------- 159 (276)
|++|+.||.|.-||..++..-+. +
T Consensus 335 i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~ 414 (603)
T KOG0318|consen 335 IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL 414 (603)
T ss_pred EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence 99999999999999865431100 0
Q ss_pred -----------------e----------ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceE
Q 023822 160 -----------------R----------VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANV 211 (276)
Q Consensus 160 -----------------~----------~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~ 211 (276)
+ .....+++++|++..+++|. |+.+++|.+..... ........|..++++
T Consensus 415 ~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l--~ee~~~~~h~a~iT~ 492 (603)
T KOG0318|consen 415 SDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL--KEEAKLLEHRAAITD 492 (603)
T ss_pred CCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc--cceeeeecccCCceE
Confidence 0 00112677889998888888 89999999987553 224455678999999
Q ss_pred EEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 212 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 212 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
+++|||+.|||++...+.+.+||..+.+.....-. -|...|.+++|+|+.+++|+|+-|-.|
T Consensus 493 vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~--FHtakI~~~aWsP~n~~vATGSlDt~V 554 (603)
T KOG0318|consen 493 VAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWA--FHTAKINCVAWSPNNKLVATGSLDTNV 554 (603)
T ss_pred EEECCCCcEEEEeccCCcEEEEEcccCceecceee--eeeeeEEEEEeCCCceEEEeccccceE
Confidence 99999999999999999999999998887433321 488999999999999999999998654
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.4e-38 Score=220.17 Aligned_cols=219 Identities=19% Similarity=0.286 Sum_probs=193.1
Q ss_pred CEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc--eeeeecccCcce
Q 023822 47 SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK--YLRYFKGHHDRV 124 (276)
Q Consensus 47 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~i 124 (276)
-+|++++.|.+||+|...+|.+.++++...+.|..+...|+++.|++++ ...|++||+++++ ++.++.+|...|
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~----~qhvRlyD~~S~np~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG----NQHVRLYDLNSNNPNPVATFEGHTKNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc----CCeeEEEEccCCCCCceeEEeccCCce
Confidence 4799999999999999999999999999999999999999999999998 7899999998875 588999999999
Q ss_pred EEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeee
Q 023822 125 VSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSV 202 (276)
Q Consensus 125 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~ 202 (276)
+++.|..+|+++++|++||+++|||+|...+.+.+ +..+++++..+|+..-|.++. +|.|++||+...... ....
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~---~~li 163 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT---HELI 163 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccc---cccC
Confidence 99999999999999999999999999998888877 567899999999887777766 899999999875431 2223
Q ss_pred cCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcE------EEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 203 GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL------LSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 203 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
+....++.++...|+|.+|+.+...|..++|++.+.+. +..++ .|.+.+..+.+|||+++||++|.|.+|
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~---ah~~~il~C~lSPd~k~lat~ssdktv 239 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ---AHNGHILRCLLSPDVKYLATCSSDKTV 239 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee---cccceEEEEEECCCCcEEEeecCCceE
Confidence 44456899999999999999999999999999876543 33444 789999999999999999999999876
No 22
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8.9e-40 Score=244.83 Aligned_cols=232 Identities=16% Similarity=0.217 Sum_probs=207.3
Q ss_pred CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCce
Q 023822 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY 113 (276)
Q Consensus 34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~ 113 (276)
..+|..+.|.|+|+.|++|+..|.+.+|+.........++.|..+|.++.|++++..++++.. +|.|++|+.+....
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~---gG~iKyWqpnmnnV 172 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDK---GGMIKYWQPNMNNV 172 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCC---CceEEecccchhhh
Confidence 457999999999999999999999999998666656667899999999999999999999998 99999999876554
Q ss_pred eeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEEEEecc
Q 023822 114 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDAR 190 (276)
Q Consensus 114 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~ 190 (276)
......|...|++++|+|+...|++|+.||+|+|||....+....+ |.-.+.++.|+|..-++++++ |..|++||.+
T Consensus 173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 4333445589999999999999999999999999999988887777 555689999999988888887 8999999999
Q ss_pred cCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCC-cEEEEe
Q 023822 191 KYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG-MFVISG 269 (276)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~ 269 (276)
++.+ +..+..|...|..+.|+|++++|+++|.|..++++|+++.+.+..++ +|+..++++.|+|-. .+|.+|
T Consensus 253 Sg~c----l~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r---~Hkkdv~~~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 253 SGSC----LATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR---GHKKDVTSLTWHPLNESLFTSG 325 (464)
T ss_pred Ccch----hhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh---cchhhheeeccccccccceeec
Confidence 9887 78888999999999999999999999999999999999999999998 899999999999954 688999
Q ss_pred cCCCCC
Q 023822 270 RVSPFS 275 (276)
Q Consensus 270 ~~dg~v 275 (276)
+.||-|
T Consensus 326 g~Dgsv 331 (464)
T KOG0284|consen 326 GSDGSV 331 (464)
T ss_pred cCCCce
Confidence 999864
No 23
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.9e-39 Score=246.73 Aligned_cols=245 Identities=18% Similarity=0.283 Sum_probs=213.1
Q ss_pred cccceeeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccC-CeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822 24 MEVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101 (276)
Q Consensus 24 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~ 101 (276)
-+...++.||+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|..++|+.++..+++++. |+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf---D~ 280 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASF---DR 280 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeec---ce
Confidence 345678899999999999999 899999999999999999986 8999999999999999999999999999998 99
Q ss_pred ceEEEEccCCceeeeecccCcceEEEEeccCC-CEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEE
Q 023822 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAV 178 (276)
Q Consensus 102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~ 178 (276)
.|++||+++|++...+. ....++|+.|+|++ +.|++|+.|+.|+.||+|+++.++.+ +...+..+.|-++++.+++
T Consensus 281 ~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFis 359 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFIS 359 (503)
T ss_pred eeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEee
Confidence 99999999999998886 45678999999998 79999999999999999999988888 7788999999999988887
Q ss_pred ee-CCeEEEEecccCCCCC------------------------------eeee------------eecCCC--CCceEEE
Q 023822 179 AF-GGYIRMFDARKYEKGP------------------------------FDIF------------SVGGDI--SDANVVK 213 (276)
Q Consensus 179 ~~-d~~i~~~d~~~~~~~~------------------------------~~~~------------~~~~~~--~~i~~~~ 213 (276)
++ |+.+++|+.+..-... +.++ .+.+|. +.-..+.
T Consensus 360 sSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 360 SSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred eccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence 77 7999999987642100 0000 111222 2345689
Q ss_pred ECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCC-cEEEEecCCCCC
Q 023822 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG-MFVISGRVSPFS 275 (276)
Q Consensus 214 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v 275 (276)
|||||.+|++|+.||.+.+||.++-+++..++ .|..++..+.|+|.. ..+|+++.||.|
T Consensus 440 fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk---ah~~~ci~v~wHP~e~Skvat~~w~G~I 499 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK---AHDQPCIGVDWHPVEPSKVATCGWDGLI 499 (503)
T ss_pred EcCCCCeEEeecCCccEEEeechhhhhhhccc---cCCcceEEEEecCCCcceeEecccCcee
Confidence 99999999999999999999999999999999 789999999999976 689999999976
No 24
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4e-37 Score=251.23 Aligned_cols=242 Identities=25% Similarity=0.418 Sum_probs=211.6
Q ss_pred cceeeccC-CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe--eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCc
Q 023822 26 VGMSFRDY-NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES 102 (276)
Q Consensus 26 ~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~ 102 (276)
....+.+| ...|.++.|+++|+.|++++.|+.+++|+....+ ....+.+|...|.+++|+|+++++++++. |++
T Consensus 150 ~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~---D~t 226 (456)
T KOG0266|consen 150 LEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSD---DKT 226 (456)
T ss_pred eeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecC---Cce
Confidence 34445454 7899999999999999999999999999998777 77777899999999999999999999998 999
Q ss_pred eEEEEc-cCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEe
Q 023822 103 LRLLSL-HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVA 179 (276)
Q Consensus 103 i~~~d~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~ 179 (276)
|++||+ ..+..++++++|...|++++|+|+++++++|+.|++|++||++++++...+ |...+..++|++++.+++++
T Consensus 227 iriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 227 LRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA 306 (456)
T ss_pred EEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc
Confidence 999999 555889999999999999999999999999999999999999999999988 66678899999999999888
Q ss_pred e-CCeEEEEecccCCCCCeeeeeecCCCC--CceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCC---c
Q 023822 180 F-GGYIRMFDARKYEKGPFDIFSVGGDIS--DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN---S 253 (276)
Q Consensus 180 ~-d~~i~~~d~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~ 253 (276)
+ |+.|++||+.++... ....+..+.. +++++.|+|+++++++++.|+.+++||+..+..+..+.. |.. .
T Consensus 307 s~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~---~~~~~~~ 381 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKL--CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG---HSNLVRC 381 (456)
T ss_pred CCCccEEEEECCCCcee--eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc---cCCccee
Confidence 8 999999999987632 1222333333 589999999999999999999999999999999999984 444 4
Q ss_pred eEEEEECCCCcEEEEecCCCCC
Q 023822 254 TLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 254 v~~~~~s~~g~~l~~~~~dg~v 275 (276)
+.+...++.++++++|+.|+.|
T Consensus 382 ~~~~~~~~~~~~i~sg~~d~~v 403 (456)
T KOG0266|consen 382 IFSPTLSTGGKLIYSGSEDGSV 403 (456)
T ss_pred EecccccCCCCeEEEEeCCceE
Confidence 5556668899999999999875
No 25
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.2e-37 Score=251.13 Aligned_cols=236 Identities=22% Similarity=0.371 Sum_probs=209.2
Q ss_pred cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEc-cCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822 26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV-TAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104 (276)
Q Consensus 26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~ 104 (276)
..+.+.+|...|.+++|+|+++++++++.|++++|||+ ..+..++++.+|...|++++|+|+++.+++++. |++|+
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~---D~tvr 271 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSD---DGTVR 271 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecC---CCcEE
Confidence 55666899999999999999999999999999999999 566899999999999999999999999999998 99999
Q ss_pred EEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce--eeeeE--e-ec-CCCeeEecCCCcEEEE
Q 023822 105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK--CQGLL--R-VQ-GRPAAAYDDQGLVFAV 178 (276)
Q Consensus 105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~--~-~~-~~~~~~~~~~~~~l~~ 178 (276)
+||++++++...+.+|...|.+++|++++++|++++.|+.|++||+.++. +...+ . .. .+..+.|+|++.++++
T Consensus 272 iWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~ 351 (456)
T KOG0266|consen 272 IWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLS 351 (456)
T ss_pred EEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999998 44555 1 22 4689999999999999
Q ss_pred ee-CCeEEEEecccCCCCCeeeeeecCCCC---CceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCC-CCc
Q 023822 179 AF-GGYIRMFDARKYEKGPFDIFSVGGDIS---DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS-RNS 253 (276)
Q Consensus 179 ~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~ 253 (276)
+. |+.+++||++.... ......|.. .+.+...++.++++++|+.|+.|++||..++..+..+. +| ...
T Consensus 352 ~~~d~~~~~w~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~---~h~~~~ 424 (456)
T KOG0266|consen 352 ASLDRTLKLWDLRSGKS----VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE---GHSKAA 424 (456)
T ss_pred ecCCCeEEEEEccCCcc----eeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc---CCCCCc
Confidence 88 78999999998665 333444444 34445567899999999999999999999999999998 67 889
Q ss_pred eEEEEECCCCcEEEEecC
Q 023822 254 TLEASFSPEGMFVISGRV 271 (276)
Q Consensus 254 v~~~~~s~~g~~l~~~~~ 271 (276)
+..++++|...++++++.
T Consensus 425 ~~~~~~~~~~~~~~s~s~ 442 (456)
T KOG0266|consen 425 VSDLSSHPTENLIASSSF 442 (456)
T ss_pred eeccccCCCcCeeeecCc
Confidence 999999999999999983
No 26
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.5e-36 Score=213.56 Aligned_cols=238 Identities=14% Similarity=0.283 Sum_probs=200.0
Q ss_pred cccceeeccCCCcEEEEEEcCC-CCEEEEeecCCeEEEEEccC---Ceeeeee-eeeeeceEEEEEeccCCeEEEeccCC
Q 023822 24 MEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTA---ATCLKTI-NSKKYGVDLVCFTSHPTTVIYSSKNG 98 (276)
Q Consensus 24 ~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~---~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~ 98 (276)
+...+.+++|++++..++|+|- |..||+++.|+.|++|+... ..+...+ .+|+..|..++|+|.+++|++++.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF-- 81 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF-- 81 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec--
Confidence 4556788999999999999997 88999999999999999874 3333333 468889999999999999999998
Q ss_pred CCCceEEEEccCC--ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc---eeeeeE--eecCCCeeEecC
Q 023822 99 WDESLRLLSLHDN--KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE---KCQGLL--RVQGRPAAAYDD 171 (276)
Q Consensus 99 ~d~~i~~~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~--~~~~~~~~~~~~ 171 (276)
|.++.||.-..+ +++.++.+|...|.+++|+++|++||+|++|.+|-+|.+... ++...+ |.+.+..+.|+|
T Consensus 82 -D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP 160 (312)
T KOG0645|consen 82 -DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP 160 (312)
T ss_pred -cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC
Confidence 999999986644 678899999999999999999999999999999999998854 344444 777899999999
Q ss_pred CCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCC
Q 023822 172 QGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS 250 (276)
Q Consensus 172 ~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 250 (276)
...+|++++ |++|++|+-... ..-.....+.+|...|.+++|+|.|..|++++.|++++||...+ .+.. .|
T Consensus 161 t~dlL~S~SYDnTIk~~~~~~d-ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~--~~ 232 (312)
T KOG0645|consen 161 TEDLLFSCSYDNTIKVYRDEDD-DDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSG--MH 232 (312)
T ss_pred CcceeEEeccCCeEEEEeecCC-CCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----Ccch--hc
Confidence 888877777 999999987742 22334667888999999999999999999999999999998652 2221 37
Q ss_pred CCceEEEEECCCCcEEEEecCCCC
Q 023822 251 RNSTLEASFSPEGMFVISGRVSPF 274 (276)
Q Consensus 251 ~~~v~~~~~s~~g~~l~~~~~dg~ 274 (276)
..++..+.|. ...|++++.|+.
T Consensus 233 sr~~Y~v~W~--~~~IaS~ggD~~ 254 (312)
T KOG0645|consen 233 SRALYDVPWD--NGVIASGGGDDA 254 (312)
T ss_pred ccceEeeeec--ccceEeccCCCE
Confidence 7889999998 457888888864
No 27
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5.6e-36 Score=232.14 Aligned_cols=238 Identities=26% Similarity=0.419 Sum_probs=212.8
Q ss_pred eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEE
Q 023822 28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 107 (276)
Q Consensus 28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d 107 (276)
+++++|.++|++++|+|++++|++++.||.+++|++.+++....+..|...+..+.|+|+++.+++++. ++.|++|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~~i~i~~ 79 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS---DKTIRLWD 79 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC---CCeEEEEE
Confidence 567799999999999999999999999999999999988888888888889999999999999999998 99999999
Q ss_pred ccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe--ecCCCeeEecCCCcEEEEee-CCeE
Q 023822 108 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQGLVFAVAF-GGYI 184 (276)
Q Consensus 108 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~-d~~i 184 (276)
+.+++....+..|...+.++.|+++++++++++.|+.|.+||+++.+....+. ...+.++.++|++.+++++. ++.|
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 159 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI 159 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcE
Confidence 99988888888899999999999998888888889999999999888777774 44578999999999999998 9999
Q ss_pred EEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCc
Q 023822 185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM 264 (276)
Q Consensus 185 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 264 (276)
++||++..+. ...+..+...+.++.|+|+++.+++++.|+.|++||+.+++.+..+. .+...+.+++|+|++.
T Consensus 160 ~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~ 232 (289)
T cd00200 160 KLWDLRTGKC----VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR---GHENGVNSVAFSPDGY 232 (289)
T ss_pred EEEEcccccc----ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh---hcCCceEEEEEcCCCc
Confidence 9999986553 34445677789999999999999999999999999999999988886 5778999999999999
Q ss_pred EEEEecCCCCC
Q 023822 265 FVISGRVSPFS 275 (276)
Q Consensus 265 ~l~~~~~dg~v 275 (276)
++++++.||.+
T Consensus 233 ~~~~~~~~~~i 243 (289)
T cd00200 233 LLASGSEDGTI 243 (289)
T ss_pred EEEEEcCCCcE
Confidence 99998878764
No 28
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-36 Score=215.81 Aligned_cols=240 Identities=16% Similarity=0.200 Sum_probs=211.6
Q ss_pred eeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEc
Q 023822 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 108 (276)
Q Consensus 29 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~ 108 (276)
.++||..+++.+.|+.+|.+|.+++.|.+..||-..+|+.+.++.+|.+.|+++....+.+++++++. |.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSA---D~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSA---DQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccc---cceeEEEEc
Confidence 47899999999999999999999999999999999899999999999999999999999999999999 999999999
Q ss_pred cCCceeeeecccCcceEEEEeccCCCEEEEeeC-----CCeEEEEecc-------CceeeeeE--eecCCCeeEecCCCc
Q 023822 109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-----DRTVLLWDQR-------AEKCQGLL--RVQGRPAAAYDDQGL 174 (276)
Q Consensus 109 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~iwd~~-------~~~~~~~~--~~~~~~~~~~~~~~~ 174 (276)
++|+.+..++ ...+|..+.|+++|++++.+.. .+.|.++|++ ..++...+ +...+..+.|.|-++
T Consensus 82 ~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 82 ETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred CCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 9999999987 6788999999999998877664 3579999998 34444444 456678899999999
Q ss_pred EEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC------
Q 023822 175 VFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK------ 247 (276)
Q Consensus 175 ~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------ 247 (276)
.++++. ||.|..||.+++.. .+.....|...|+.++++|+..++++++.|.+-++||..+-+.++++...
T Consensus 161 ~ii~Ghe~G~is~~da~~g~~---~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~a 237 (327)
T KOG0643|consen 161 TIIAGHEDGSISIYDARTGKE---LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTA 237 (327)
T ss_pred EEEEecCCCcEEEEEcccCce---eeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccce
Confidence 888888 89999999998653 23445678889999999999999999999999999999887777765432
Q ss_pred ----------------------------------------------CCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 248 ----------------------------------------------PVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 248 ----------------------------------------------~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
.+|-++|++++|+|+|+..++|++||+|
T Consensus 238 aisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~V 311 (327)
T KOG0643|consen 238 AISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYV 311 (327)
T ss_pred ecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceE
Confidence 1688999999999999999999999987
No 29
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-36 Score=219.32 Aligned_cols=205 Identities=19% Similarity=0.317 Sum_probs=189.4
Q ss_pred hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEec-cCCeEEEeccCCCC
Q 023822 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWD 100 (276)
Q Consensus 22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~d 100 (276)
...+..+.+.+|++-+.|+.|-+| ..|+|++.|.+..+||+++++.+..+.+|.+.|.++.++| +++.+++++. |
T Consensus 133 g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c---D 208 (343)
T KOG0286|consen 133 GNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC---D 208 (343)
T ss_pred ccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccc---c
Confidence 344566789999999999999985 5788999999999999999999999999999999999999 9999999998 9
Q ss_pred CceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe----ecCCCeeEecCCCcEE
Q 023822 101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR----VQGRPAAAYDDQGLVF 176 (276)
Q Consensus 101 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~l 176 (276)
+..++||++.+..+++|.+|...|++++|.|+|.-|++|+.|++.++||+|..+.+..+. ..++.+++|+..|++|
T Consensus 209 ~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlL 288 (343)
T KOG0286|consen 209 KSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLL 288 (343)
T ss_pred cceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEE
Confidence 999999999999999999999999999999999999999999999999999998888873 3457799999999999
Q ss_pred EEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEE
Q 023822 177 AVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234 (276)
Q Consensus 177 ~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 234 (276)
.++. |.++.+||.-.++. .-.+.+|...|+++..+|||..+++|+-|..++||.
T Consensus 289 fagy~d~~c~vWDtlk~e~----vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 289 FAGYDDFTCNVWDTLKGER----VGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EeeecCCceeEeeccccce----EEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 8887 89999999877665 667889999999999999999999999999999994
No 30
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-37 Score=241.15 Aligned_cols=241 Identities=19% Similarity=0.319 Sum_probs=221.2
Q ss_pred ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822 25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104 (276)
Q Consensus 25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~ 104 (276)
+..+++..|+.+|.++.|+|...+++++-.+|.|.|||.++...+..+...+.+|....|-+..+.+++|+. |..|+
T Consensus 4 ~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsD---D~~Ir 80 (794)
T KOG0276|consen 4 DFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSD---DMQIR 80 (794)
T ss_pred hhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecC---CceEE
Confidence 444567779999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred EEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc-eeeeeE--eecCCCeeEecCCC-cEEEEee
Q 023822 105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE-KCQGLL--RVQGRPAAAYDDQG-LVFAVAF 180 (276)
Q Consensus 105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~--~~~~~~~~~~~~~~-~~l~~~~ 180 (276)
+|+.++++.+..+..|.+.|.+++.+|...++++++.|-+|++||.+.. .+.+++ |.+-+.+++|+|.. ..+++++
T Consensus 81 Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 81 VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee
Confidence 9999999999999999999999999999999999999999999999865 555666 66668899999954 5666666
Q ss_pred -CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC--cEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEE
Q 023822 181 -GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG--RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 257 (276)
Q Consensus 181 -d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 257 (276)
|++|++|.+.+... .+++.+|...|+++.+-+.| .+|++|+.|..|+|||.++..+++++. +|...|..+
T Consensus 161 LDrTVKVWslgs~~~----nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe---GHt~Nvs~v 233 (794)
T KOG0276|consen 161 LDRTVKVWSLGSPHP----NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE---GHTNNVSFV 233 (794)
T ss_pred ccccEEEEEcCCCCC----ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh---cccccceEE
Confidence 99999999987655 78888999999999999865 799999999999999999999999999 899999999
Q ss_pred EECCCCcEEEEecCCCCC
Q 023822 258 SFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 258 ~~s~~g~~l~~~~~dg~v 275 (276)
.|+|.-..+++||+||+|
T Consensus 234 ~fhp~lpiiisgsEDGTv 251 (794)
T KOG0276|consen 234 FFHPELPIIISGSEDGTV 251 (794)
T ss_pred EecCCCcEEEEecCCccE
Confidence 999999999999999997
No 31
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.8e-35 Score=218.88 Aligned_cols=242 Identities=13% Similarity=0.215 Sum_probs=213.3
Q ss_pred cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822 26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 105 (276)
Q Consensus 26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~ 105 (276)
...+|..|+++|.+++.+|+.++++||+.|..-.+|++.++.....+.+|+..|+++.|+.++.+|+++.. +|.|++
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdm---sG~v~v 132 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDM---SGKVLV 132 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCC---CccEEE
Confidence 45778999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred EEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CC
Q 023822 106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GG 182 (276)
Q Consensus 106 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~ 182 (276)
|+..++.....+...-..|.=+.|+|.+..|+.|+.||.+.+|.+.++...+.+ +..+..+-.|.|+|+.++++. ||
T Consensus 133 ~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg 212 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDG 212 (399)
T ss_pred EEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCc
Confidence 999999988888766777888999999999999999999999999997766776 455566788999999888888 89
Q ss_pred eEEEEecccCCCCC------------------------------------------------------------------
Q 023822 183 YIRMFDARKYEKGP------------------------------------------------------------------ 196 (276)
Q Consensus 183 ~i~~~d~~~~~~~~------------------------------------------------------------------ 196 (276)
+|++|++.++....
T Consensus 213 ti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~ 292 (399)
T KOG0296|consen 213 TIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESI 292 (399)
T ss_pred eEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhc
Confidence 99999998754100
Q ss_pred -----------------ee--------eeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCC
Q 023822 197 -----------------FD--------IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251 (276)
Q Consensus 197 -----------------~~--------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 251 (276)
+. ....-.|..+|..+.|-+ ..+|++++.+|.|+.||.++|+++..+. +|.
T Consensus 293 ~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~---GH~ 368 (399)
T KOG0296|consen 293 PSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYT---GHQ 368 (399)
T ss_pred ccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEe---cCc
Confidence 00 000111667788899988 6789999999999999999999999999 899
Q ss_pred CceEEEEECCCCcEEEEecCCCC
Q 023822 252 NSTLEASFSPEGMFVISGRVSPF 274 (276)
Q Consensus 252 ~~v~~~~~s~~g~~l~~~~~dg~ 274 (276)
..|.+++++|++++++++|.|++
T Consensus 369 ~~Il~f~ls~~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 369 MGILDFALSPQKRLVVTVSDDNT 391 (399)
T ss_pred hheeEEEEcCCCcEEEEecCCCe
Confidence 99999999999999999999986
No 32
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.4e-36 Score=241.36 Aligned_cols=243 Identities=14% Similarity=0.238 Sum_probs=217.7
Q ss_pred hccccceeeccCCCcEEEEEEcCCCCEEEEeecC-CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCC
Q 023822 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDD-ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD 100 (276)
Q Consensus 22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d 100 (276)
+.+..++.+.--..+|..++|+..|.+||.|+.. |.+.||++.+..-+...++|...+.+++++|||+.+++|+. |
T Consensus 295 P~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e---D 371 (893)
T KOG0291|consen 295 PDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE---D 371 (893)
T ss_pred CCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC---C
Confidence 4556667777777899999999999999988754 89999999998888888999999999999999999999999 9
Q ss_pred CceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecC---CCeeEecCCCcEEE
Q 023822 101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---RPAAAYDDQGLVFA 177 (276)
Q Consensus 101 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~l~ 177 (276)
|.|++||..++-+..++..|+..|+.+.|+..++.+++++.||+|+.||+...+..+++..+. ..+++.+|.|.+++
T Consensus 372 gKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~ 451 (893)
T KOG0291|consen 372 GKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVC 451 (893)
T ss_pred CcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEE
Confidence 999999999999999999999999999999999999999999999999999999988884332 45889999999998
Q ss_pred Eee-C-CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCC-cEEEEeecCCCCCCce
Q 023822 178 VAF-G-GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNST 254 (276)
Q Consensus 178 ~~~-d-~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v 254 (276)
+|. | =.|.+|++++++. +-.+.+|.+||.+++|+|.|..|+++|.|.+|++||+-.. ....++. +...+
T Consensus 452 AG~~d~F~IfvWS~qTGql----lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~----i~sdv 523 (893)
T KOG0291|consen 452 AGAQDSFEIFVWSVQTGQL----LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE----IRSDV 523 (893)
T ss_pred eeccceEEEEEEEeecCee----eehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe----eccce
Confidence 888 5 6799999999886 6678899999999999999999999999999999998654 3445555 67889
Q ss_pred EEEEECCCCcEEEEecCCCCC
Q 023822 255 LEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 255 ~~~~~s~~g~~l~~~~~dg~v 275 (276)
..++|+|||+-|++++.||.+
T Consensus 524 l~vsfrPdG~elaVaTldgqI 544 (893)
T KOG0291|consen 524 LAVSFRPDGKELAVATLDGQI 544 (893)
T ss_pred eEEEEcCCCCeEEEEEecceE
Confidence 999999999999999999864
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=238.45 Aligned_cols=243 Identities=17% Similarity=0.311 Sum_probs=209.5
Q ss_pred cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822 26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 105 (276)
Q Consensus 26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~ 105 (276)
.+...++|...+++++++|||+++|+|+.||.|+|||..++-|..++..|...|+.+.|+..++.+++++- ||+|+.
T Consensus 342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSL---DGtVRA 418 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSL---DGTVRA 418 (893)
T ss_pred eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeec---CCeEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred EEccCCceeeeeccc-CcceEEEEeccCCCEEEEeeCCC-eEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-
Q 023822 106 LSLHDNKYLRYFKGH-HDRVVSLSLCSSKDCFISGSLDR-TVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF- 180 (276)
Q Consensus 106 ~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~- 180 (276)
||+...+..+++... +....|++..|.|..+.+|+.|. .|++|++++++.+..+ |..++.+++|+|.+..|++++
T Consensus 419 wDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SW 498 (893)
T KOG0291|consen 419 WDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSW 498 (893)
T ss_pred eeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccc
Confidence 999999888888643 34567889999999999999887 5999999999999888 777888999999999999998
Q ss_pred CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC-------------
Q 023822 181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK------------- 247 (276)
Q Consensus 181 d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------- 247 (276)
|.+|++||+-.... ....-.+...+..++|+|+|+.|++++.||.|.+||...+..+..+...
T Consensus 499 DkTVRiW~if~s~~----~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ 574 (893)
T KOG0291|consen 499 DKTVRIWDIFSSSG----TVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRI 574 (893)
T ss_pred cceEEEEEeeccCc----eeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccccccee
Confidence 99999999866432 2222234567999999999999999999999999999877666444311
Q ss_pred ----CCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 248 ----PVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 248 ----~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
.......+.+++++||..+++||....+
T Consensus 575 ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~i 606 (893)
T KOG0291|consen 575 TAENSAKGKTFTTICYSADGKCILAGGESNSI 606 (893)
T ss_pred ehhhcccCCceEEEEEcCCCCEEEecCCcccE
Confidence 1223578999999999999999988764
No 34
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-36 Score=231.93 Aligned_cols=243 Identities=19% Similarity=0.309 Sum_probs=213.3
Q ss_pred ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822 25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104 (276)
Q Consensus 25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~ 104 (276)
...+++...+..|+++.|..||++||+|...|.|+|||..+...++.+..|..++..+.|+|+++.+++.+.+ |+.++
T Consensus 59 ~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sD--d~v~k 136 (487)
T KOG0310|consen 59 SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSD--DKVVK 136 (487)
T ss_pred hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCC--CceEE
Confidence 3344455667889999999999999999999999999977767788899999999999999977655544442 89999
Q ss_pred EEEccCCceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCc-eeeeeE-eecCCCeeEecCCCcEEEEeeC
Q 023822 105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAE-KCQGLL-RVQGRPAAAYDDQGLVFAVAFG 181 (276)
Q Consensus 105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~d 181 (276)
+||+.+......+.+|++.|.|.+|+|... ++++|++||+|++||++.. ..+.++ +..++..+.+-|.|.+++++..
T Consensus 137 ~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG 216 (487)
T KOG0310|consen 137 YWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG 216 (487)
T ss_pred EEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC
Confidence 999999887668999999999999999654 8999999999999999987 566666 7888999999999999999999
Q ss_pred CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECC
Q 023822 182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP 261 (276)
Q Consensus 182 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~ 261 (276)
..+++||+.++.+. +.....|...|+|+.+..++..|++++-|+.|++||+.+.+.+..+. ..++|.+++.+|
T Consensus 217 n~vkVWDl~~G~ql---l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~----~~~pvLsiavs~ 289 (487)
T KOG0310|consen 217 NSVKVWDLTTGGQL---LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK----YPGPVLSIAVSP 289 (487)
T ss_pred CeEEEEEecCCcee---hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee----cccceeeEEecC
Confidence 99999999976542 34445588999999999999999999999999999999999999997 789999999999
Q ss_pred CCcEEEEecCCCCCC
Q 023822 262 EGMFVISGRVSPFSS 276 (276)
Q Consensus 262 ~g~~l~~~~~dg~vs 276 (276)
+++.++.|..||.++
T Consensus 290 dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 290 DDQTVVIGMSNGLVS 304 (487)
T ss_pred CCceEEEecccceee
Confidence 999999999999875
No 35
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-36 Score=226.74 Aligned_cols=245 Identities=18% Similarity=0.245 Sum_probs=195.3
Q ss_pred cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC---eeeeeeeeeeeceEEEEEeccCCeEEEeccCCCC
Q 023822 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD 100 (276)
Q Consensus 24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d 100 (276)
.+..+.+..|+..|.-+.||++|++||+++.|.+..+|++... +...++.+|..+|..+.|+||.+++++++. +
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~---~ 290 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGF---D 290 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCc---h
Confidence 3445678899999999999999999999999999999988644 457788899999999999999999999998 8
Q ss_pred CceEEEEccCCceeeeec-ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCCcEE
Q 023822 101 ESLRLLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLVF 176 (276)
Q Consensus 101 ~~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~l 176 (276)
..+.+||+.++.....+. ++...+.+++|.|||..+++|+.|+.+..||++... .... +...+.++++.+||+.+
T Consensus 291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~v 369 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYV 369 (519)
T ss_pred HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEE
Confidence 899999999998877664 345789999999999999999999999999988654 2222 34457789999999877
Q ss_pred EEee-CCeEEEEecccCCCC-------Ceeee------------------------------eecCCCCC--ceEEEECC
Q 023822 177 AVAF-GGYIRMFDARKYEKG-------PFDIF------------------------------SVGGDISD--ANVVKFSN 216 (276)
Q Consensus 177 ~~~~-d~~i~~~d~~~~~~~-------~~~~~------------------------------~~~~~~~~--i~~~~~~~ 216 (276)
.... |..|++|+.++.... ++..+ ...+|... +..-+|--
T Consensus 370 l~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg 449 (519)
T KOG0293|consen 370 LLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG 449 (519)
T ss_pred EEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCC
Confidence 6655 899999987653321 11000 01111111 11112222
Q ss_pred -CCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCC-cEEEEecCCCCC
Q 023822 217 -DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG-MFVISGRVSPFS 275 (276)
Q Consensus 217 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v 275 (276)
+..++++||+|+.|+||+..+|+++..+. ||...|++++|+|.. .++|+||+||+|
T Consensus 450 ~~~~fiaSGSED~kvyIWhr~sgkll~~Ls---GHs~~vNcVswNP~~p~m~ASasDDgtI 507 (519)
T KOG0293|consen 450 GNDKFIASGSEDSKVYIWHRISGKLLAVLS---GHSKTVNCVSWNPADPEMFASASDDGTI 507 (519)
T ss_pred CCcceEEecCCCceEEEEEccCCceeEeec---CCcceeeEEecCCCCHHHhhccCCCCeE
Confidence 33589999999999999999999999999 899999999999966 679999999986
No 36
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.6e-34 Score=224.03 Aligned_cols=240 Identities=25% Similarity=0.411 Sum_probs=211.7
Q ss_pred cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822 26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 105 (276)
Q Consensus 26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~ 105 (276)
....+..|...+..+.|+|++++|++++.||.|++|++.+++....+..|...+.++.|+++++.+++++. ++.|.+
T Consensus 43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~i~~ 119 (289)
T cd00200 43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSR---DKTIKV 119 (289)
T ss_pred cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecC---CCeEEE
Confidence 45667789999999999999999999999999999999988888888888889999999999888888887 999999
Q ss_pred EEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe--ecCCCeeEecCCCcEEEEee-CC
Q 023822 106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQGLVFAVAF-GG 182 (276)
Q Consensus 106 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~-d~ 182 (276)
||+.+++....+..|...+.+++|+|++.++++++.|+.|++||++..+....+. ...+.++.|+|++..++++. ++
T Consensus 120 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 199 (289)
T cd00200 120 WDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDG 199 (289)
T ss_pred EECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCC
Confidence 9999888888888899999999999998888888889999999999888777763 34588999999996665555 99
Q ss_pred eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCC
Q 023822 183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 262 (276)
Q Consensus 183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 262 (276)
.|++||++..+. ...+..+...+.+++|+|++.++++++.||.|++||+.+++....+. .|...+.+++|+|+
T Consensus 200 ~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~---~~~~~i~~~~~~~~ 272 (289)
T cd00200 200 TIKLWDLSTGKC----LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS---GHTNSVTSLAWSPD 272 (289)
T ss_pred cEEEEECCCCce----ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc---ccCCcEEEEEECCC
Confidence 999999987543 34444677799999999998888888889999999999999888887 68889999999999
Q ss_pred CcEEEEecCCCCC
Q 023822 263 GMFVISGRVSPFS 275 (276)
Q Consensus 263 g~~l~~~~~dg~v 275 (276)
+++|++++.||.+
T Consensus 273 ~~~l~~~~~d~~i 285 (289)
T cd00200 273 GKRLASGSADGTI 285 (289)
T ss_pred CCEEEEecCCCeE
Confidence 9999999999875
No 37
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.1e-36 Score=243.03 Aligned_cols=250 Identities=22% Similarity=0.315 Sum_probs=202.0
Q ss_pred Hhhccccceeec-cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC---------------------------------
Q 023822 20 ILQSMEVGMSFR-DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA--------------------------------- 65 (276)
Q Consensus 20 ~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--------------------------------- 65 (276)
.+..+...+.+. .|.+.|.++.|++||+|||+|++|+.|+||.+..
T Consensus 252 elsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~ 331 (712)
T KOG0283|consen 252 ELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEK 331 (712)
T ss_pred cceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccc
Confidence 334455566677 8999999999999999999999999999998754
Q ss_pred ---------------------------CeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeec
Q 023822 66 ---------------------------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK 118 (276)
Q Consensus 66 ---------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~ 118 (276)
.+++..+.+|.+.|.++.|+. +.+|++++. |.+|++|++...+++..|.
T Consensus 332 ~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSM---DKTVRLWh~~~~~CL~~F~ 407 (712)
T KOG0283|consen 332 ISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSM---DKTVRLWHPGRKECLKVFS 407 (712)
T ss_pred ccccccccccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccc---cccEEeecCCCcceeeEEe
Confidence 012334567888999999995 567888888 9999999999999999887
Q ss_pred ccCcceEEEEecc-CCCEEEEeeCCCeEEEEeccCceeeeeEe-ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCC
Q 023822 119 GHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKG 195 (276)
Q Consensus 119 ~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~ 195 (276)
|.+.|+|++|+| |.++|++|+-|++|+||++...+...-.. ..-++.++|.|+|+..++|+ +|.+++|+....+..
T Consensus 408 -HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 408 -HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred -cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEE
Confidence 999999999999 67799999999999999999888776653 35588999999999998888 999999999875432
Q ss_pred Ceeeeeec----CCCCCceEEEECCCC-cEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEec
Q 023822 196 PFDIFSVG----GDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGR 270 (276)
Q Consensus 196 ~~~~~~~~----~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 270 (276)
........ .....|+.+.|.|.. ..+++.+.|..|||||.++.+++..|+... ....-....|+.||++|++++
T Consensus 487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~-n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR-NTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred EeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc-cCCcceeeeEccCCCEEEEee
Confidence 11111111 112379999999854 357888899999999999999999988544 233445679999999999999
Q ss_pred CCCCC
Q 023822 271 VSPFS 275 (276)
Q Consensus 271 ~dg~v 275 (276)
+|..|
T Consensus 566 eDs~V 570 (712)
T KOG0283|consen 566 EDSWV 570 (712)
T ss_pred cCceE
Confidence 99765
No 38
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=6.9e-37 Score=216.10 Aligned_cols=239 Identities=18% Similarity=0.303 Sum_probs=215.1
Q ss_pred ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822 25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104 (276)
Q Consensus 25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~ 104 (276)
.-+-+|.||.+.|.+...+.+...-|+++.|-+-++||.-+|..+..+. |+.-|..++|+.|.++|++++. +..++
T Consensus 50 dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~---ekllr 125 (334)
T KOG0278|consen 50 DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQ---EKLLR 125 (334)
T ss_pred CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccch---HHHhh
Confidence 4467899999999999999998889999999999999999999888875 6668999999999999999998 99999
Q ss_pred EEEccCCc-eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEeeCC
Q 023822 105 LLSLHDNK-YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAFGG 182 (276)
Q Consensus 105 ~~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~d~ 182 (276)
+||++..+ +...+.+|.+.|..+.|....+.+++.+.|++|++||.+++..++.+ ...++.++.++++|++++.+..+
T Consensus 126 vfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gs 205 (334)
T KOG0278|consen 126 VFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGS 205 (334)
T ss_pred hhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCc
Confidence 99998764 56678899999999999998899999999999999999999999988 45678899999999999999999
Q ss_pred eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEe-ecCCCCCCceEEEEECC
Q 023822 183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY-NVKPVSRNSTLEASFSP 261 (276)
Q Consensus 183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~s~ 261 (276)
.|.+||..+... .....-+..|.+..++|+...+++|++|..++.||..+++.+..+ + +|.++|.++.|+|
T Consensus 206 sV~Fwdaksf~~-----lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nk---gh~gpVhcVrFSP 277 (334)
T KOG0278|consen 206 SVKFWDAKSFGL-----LKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNK---GHFGPVHCVRFSP 277 (334)
T ss_pred eeEEeccccccc-----eeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeeccc---CCCCceEEEEECC
Confidence 999999988653 222234557899999999999999999999999999999999886 4 7999999999999
Q ss_pred CCcEEEEecCCCCC
Q 023822 262 EGMFVISGRVSPFS 275 (276)
Q Consensus 262 ~g~~l~~~~~dg~v 275 (276)
||...++||+||++
T Consensus 278 dGE~yAsGSEDGTi 291 (334)
T KOG0278|consen 278 DGELYASGSEDGTI 291 (334)
T ss_pred CCceeeccCCCceE
Confidence 99999999999986
No 39
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=5.8e-34 Score=232.12 Aligned_cols=227 Identities=17% Similarity=0.254 Sum_probs=183.7
Q ss_pred eeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCC-------eeeeeeeeeeeceEEEEEeccC-CeEEEeccCCC
Q 023822 29 SFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGW 99 (276)
Q Consensus 29 ~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~ 99 (276)
.+.+|.++|++++|+| ++++|++|+.|++|++||+.++ +++..+.+|...|.+++|+|++ ..|++++.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~--- 146 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA--- 146 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC---
Confidence 4789999999999999 8899999999999999999765 3466788999999999999986 68888887
Q ss_pred CCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecC---CCeeEecCCCcE-
Q 023822 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---RPAAAYDDQGLV- 175 (276)
Q Consensus 100 d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~- 175 (276)
|+.|++||+++++....+..|...|.+++|+|++++|++++.|++|++||+++++.+..+..+. ...+.|.+++..
T Consensus 147 DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 9999999999999999999999999999999999999999999999999999998877774332 235677777654
Q ss_pred EEEee----CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee-cCCcEEEEECCCCcEEEEeecCCCC
Q 023822 176 FAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNVKPVS 250 (276)
Q Consensus 176 l~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~ 250 (276)
++++. |+.|++||+++... +...... .....+....|++++++|++++ .|+.|++||+.+++....... .+
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~-p~~~~~~-d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~--~s 302 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMAS-PYSTVDL-DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY--SS 302 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCC-ceeEecc-CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec--cC
Confidence 44442 68999999987553 2222211 2233455678999999998887 599999999999988776543 24
Q ss_pred CCceEEEEECCC
Q 023822 251 RNSTLEASFSPE 262 (276)
Q Consensus 251 ~~~v~~~~~s~~ 262 (276)
..++..++|.|.
T Consensus 303 ~~~~~g~~~~pk 314 (493)
T PTZ00421 303 VEPHKGLCMMPK 314 (493)
T ss_pred CCCCcceEeccc
Confidence 556777888774
No 40
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.3e-35 Score=209.40 Aligned_cols=237 Identities=14% Similarity=0.226 Sum_probs=203.9
Q ss_pred eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeee--eeeeeeceEEEEEecc-CCeEEEeccCCCCCceE
Q 023822 28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT--INSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLR 104 (276)
Q Consensus 28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~ 104 (276)
+.+++|.+.|.+++|+.+|..|++|+.|+++.+|+++..+.... ..+|...|-.++|.|. ...+++++. |..|+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~---dk~ir 90 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASG---DKTIR 90 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecC---CceEE
Confidence 56789999999999999999999999999999999987755443 4678888999999885 556777776 99999
Q ss_pred EEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe-ecCCCeeEecCCCcEEEEee-CC
Q 023822 105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFAVAF-GG 182 (276)
Q Consensus 105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-d~ 182 (276)
+||++.+++........+.+ -+.|+|+|++++.+..|..|...|.++.+.....+ ...+..++|+.++.++.... .|
T Consensus 91 ~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG 169 (313)
T KOG1407|consen 91 IWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLG 169 (313)
T ss_pred EEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCc
Confidence 99999999998887555554 47899999999999999999999999988777663 33456788887776666555 69
Q ss_pred eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCC
Q 023822 183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 262 (276)
Q Consensus 183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 262 (276)
.|.|......+. +..+..|+....|+.|+|+|+|+|+|+.|..+.+||+...-+++.+. .+.-+|..+.||.|
T Consensus 170 ~v~ILsypsLkp----v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is---RldwpVRTlSFS~d 242 (313)
T KOG1407|consen 170 CVEILSYPSLKP----VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS---RLDWPVRTLSFSHD 242 (313)
T ss_pred eEEEEecccccc----ccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec---cccCceEEEEeccC
Confidence 999999886554 67788899999999999999999999999999999999988888888 68899999999999
Q ss_pred CcEEEEecCCCCC
Q 023822 263 GMFVISGRVSPFS 275 (276)
Q Consensus 263 g~~l~~~~~dg~v 275 (276)
|++||+||+|-++
T Consensus 243 g~~lASaSEDh~I 255 (313)
T KOG1407|consen 243 GRMLASASEDHFI 255 (313)
T ss_pred cceeeccCccceE
Confidence 9999999999765
No 41
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.4e-35 Score=237.93 Aligned_cols=252 Identities=19% Similarity=0.317 Sum_probs=221.5
Q ss_pred eeehHHHhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEE
Q 023822 14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIY 93 (276)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 93 (276)
+.+++-.+ ...+..|.+|.++|..++|+|++.++++|+.|..|+||+.++.+++.++.+|-..|..+.|++.-..+++
T Consensus 33 IQlWDYRM--~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlS 110 (1202)
T KOG0292|consen 33 IQLWDYRM--GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILS 110 (1202)
T ss_pred eeeehhhh--hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEE
Confidence 44554433 2446778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce-------------------
Q 023822 94 SSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK------------------- 154 (276)
Q Consensus 94 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------------------- 154 (276)
++. |.+|+||+..+++++..+.+|...|.|..|+|....++++|-|.+|++||+..-+
T Consensus 111 ASD---DQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~ 187 (1202)
T KOG0292|consen 111 ASD---DQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGN 187 (1202)
T ss_pred ccC---CCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccc
Confidence 998 9999999999999999999999999999999999999999999999999975211
Q ss_pred ---------eeeeE---eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEE
Q 023822 155 ---------CQGLL---RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM 221 (276)
Q Consensus 155 ---------~~~~~---~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 221 (276)
.++.+ |..+++-++|+|.-.++++|. |+.|++|.+...+ ....-...+|.+.|.++-|+|...++
T Consensus 188 ~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK--aWEvDtcrgH~nnVssvlfhp~q~lI 265 (1202)
T KOG0292|consen 188 SDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK--AWEVDTCRGHYNNVSSVLFHPHQDLI 265 (1202)
T ss_pred hhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc--ceeehhhhcccCCcceEEecCcccee
Confidence 11111 455678899999998888888 7999999987633 33455667899999999999999999
Q ss_pred EEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 222 LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 222 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
++.++|++|++||+...+.+++++ ...+..+.++-+|..+++++|-+.|++
T Consensus 266 lSnsEDksirVwDm~kRt~v~tfr---rendRFW~laahP~lNLfAAgHDsGm~ 316 (1202)
T KOG0292|consen 266 LSNSEDKSIRVWDMTKRTSVQTFR---RENDRFWILAAHPELNLFAAGHDSGMI 316 (1202)
T ss_pred EecCCCccEEEEecccccceeeee---ccCCeEEEEEecCCcceeeeecCCceE
Confidence 999999999999999999999998 456789999999999999999988864
No 42
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.2e-34 Score=248.74 Aligned_cols=235 Identities=15% Similarity=0.271 Sum_probs=196.5
Q ss_pred eccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC----e----eeeeeeeeeeceEEEEEecc-CCeEEEeccCCCC
Q 023822 30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA----T----CLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWD 100 (276)
Q Consensus 30 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~----~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d 100 (276)
+..|.+.|.+++|+|++++||+|+.|+.|+||+.... . +...+. +...+.+++|++. +..+++++. |
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~---D 554 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNF---E 554 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeC---C
Confidence 4458999999999999999999999999999997532 1 122222 3457899999874 678888887 9
Q ss_pred CceEEEEccCCceeeeecccCcceEEEEecc-CCCEEEEeeCCCeEEEEeccCceeeeeEee-cCCCeeEec-CCCcEEE
Q 023822 101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRV-QGRPAAAYD-DQGLVFA 177 (276)
Q Consensus 101 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~-~~~~~l~ 177 (276)
+.|++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.|+.|++||++++.....+.. ..+.++.|+ +++.+++
T Consensus 555 g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~la 634 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLA 634 (793)
T ss_pred CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEE
Confidence 9999999999999999999999999999997 788999999999999999999888777733 356678884 5688887
Q ss_pred Eee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCC------cEEEEeecCCCC
Q 023822 178 VAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG------TLLSTYNVKPVS 250 (276)
Q Consensus 178 ~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~ 250 (276)
+++ |+.|++||++.... ....+.+|...|.++.|. ++.+|++++.|+.|++||+..+ +.+..+. +|
T Consensus 635 tgs~dg~I~iwD~~~~~~---~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~---gh 707 (793)
T PLN00181 635 FGSADHKVYYYDLRNPKL---PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM---GH 707 (793)
T ss_pred EEeCCCeEEEEECCCCCc---cceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc---CC
Confidence 777 99999999987542 134456788899999997 6788999999999999998743 5667777 78
Q ss_pred CCceEEEEECCCCcEEEEecCCCCC
Q 023822 251 RNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 251 ~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
...+..++|+|++++|++|+.||.|
T Consensus 708 ~~~i~~v~~s~~~~~lasgs~D~~v 732 (793)
T PLN00181 708 TNVKNFVGLSVSDGYIATGSETNEV 732 (793)
T ss_pred CCCeeEEEEcCCCCEEEEEeCCCEE
Confidence 8999999999999999999999975
No 43
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-35 Score=230.19 Aligned_cols=242 Identities=19% Similarity=0.243 Sum_probs=218.7
Q ss_pred cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (276)
Q Consensus 24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i 103 (276)
...++.+.-..-||.+..|-+..+++++|+.|..|+||+..+++.+..+..|...|.+++.+|...++++++. |-.|
T Consensus 45 qtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSD---Dm~i 121 (794)
T KOG0276|consen 45 QTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSD---DMTI 121 (794)
T ss_pred ceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCC---ccEE
Confidence 4456667777789999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred EEEEccCC-ceeeeecccCcceEEEEeccC-CCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCC--cEEE
Q 023822 104 RLLSLHDN-KYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQG--LVFA 177 (276)
Q Consensus 104 ~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~--~~l~ 177 (276)
++||.+.+ .+.+++.+|...|.+++|+|. .+.|++++.|++|++|.+.+..+..++ |..+++++.+-+.| .+|+
T Consensus 122 KlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylI 201 (794)
T KOG0276|consen 122 KLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLI 201 (794)
T ss_pred EEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEE
Confidence 99998765 678899999999999999995 569999999999999999999998888 77789999998866 4555
Q ss_pred Eee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEE
Q 023822 178 VAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE 256 (276)
Q Consensus 178 ~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 256 (276)
++. |..|++||.++..+ +..+.+|...|+.+.|+|.-..+++|++||+++||+..+.++...+. -....+++
T Consensus 202 sgaDD~tiKvWDyQtk~C----V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn---~gleRvW~ 274 (794)
T KOG0276|consen 202 SGADDLTIKVWDYQTKSC----VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN---YGLERVWC 274 (794)
T ss_pred ecCCCceEEEeecchHHH----HHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh---cCCceEEE
Confidence 555 89999999998776 77889999999999999999999999999999999999988888887 46688999
Q ss_pred EEECCCCcEEEEecCCCCC
Q 023822 257 ASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 257 ~~~s~~g~~l~~~~~dg~v 275 (276)
++-.+.+..++.|.++|.+
T Consensus 275 I~~~k~~~~i~vG~Deg~i 293 (794)
T KOG0276|consen 275 IAAHKGDGKIAVGFDEGSV 293 (794)
T ss_pred EeecCCCCeEEEeccCCcE
Confidence 9999999999999998875
No 44
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.6e-35 Score=216.12 Aligned_cols=245 Identities=19% Similarity=0.286 Sum_probs=220.4
Q ss_pred ccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCc
Q 023822 23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES 102 (276)
Q Consensus 23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~ 102 (276)
+.++..++.||...|..+++|+-..||++++.|+.|+.||++..+.++.+.+|-..|.+++.+|.-..|++++. |.+
T Consensus 182 tg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~gr---Dst 258 (460)
T KOG0285|consen 182 TGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGR---DST 258 (460)
T ss_pred cCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCC---cce
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred eEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee
Q 023822 103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF 180 (276)
Q Consensus 103 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~ 180 (276)
+++||+++...+..+.+|..+|.++.+.|-...+++|+.|++|++||++.++....+ +...+++++.+|....+++++
T Consensus 259 ~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas 338 (460)
T KOG0285|consen 259 IRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS 338 (460)
T ss_pred EEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC
Confidence 999999999999999999999999999998889999999999999999999988877 556688999999999999999
Q ss_pred CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC--C---CCCCceE
Q 023822 181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK--P---VSRNSTL 255 (276)
Q Consensus 181 d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~~~~v~ 255 (276)
...|+-|++..+.. ...+.+|..-+++++...|| ++++|+++|.|.+||.++|...+..... + ..+..|.
T Consensus 339 ~dnik~w~~p~g~f----~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~ 413 (460)
T KOG0285|consen 339 PDNIKQWKLPEGEF----LQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIF 413 (460)
T ss_pred CccceeccCCccch----hhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCcccccccee
Confidence 88999999987654 55578899999999998886 6888999999999999998877665311 1 1356789
Q ss_pred EEEECCCCcEEEEecCCCCC
Q 023822 256 EASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 256 ~~~~s~~g~~l~~~~~dg~v 275 (276)
+.+|...|..|++|..|.++
T Consensus 414 as~fDktg~rlit~eadKtI 433 (460)
T KOG0285|consen 414 ASCFDKTGSRLITGEADKTI 433 (460)
T ss_pred EEeecccCceEEeccCCcce
Confidence 99999999999999999875
No 45
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7e-34 Score=202.86 Aligned_cols=241 Identities=14% Similarity=0.199 Sum_probs=196.6
Q ss_pred hccccceee-ccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC--CeeeeeeeeeeeceEEEEEeccCCeEEEeccCC
Q 023822 22 QSMEVGMSF-RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA--ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG 98 (276)
Q Consensus 22 ~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 98 (276)
.++.....+ .+|+..|.+++|+|.|++||+++.|.++.||.-.. .+++..+.+|+..|.+++|+++|.+|++++.
T Consensus 48 ~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSR-- 125 (312)
T KOG0645|consen 48 DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSR-- 125 (312)
T ss_pred CcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeC--
Confidence 345555555 36999999999999999999999999999998663 4788999999999999999999999999999
Q ss_pred CCCceEEEEccCC---ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEecc---CceeeeeE--eecCCCeeEec
Q 023822 99 WDESLRLLSLHDN---KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR---AEKCQGLL--RVQGRPAAAYD 170 (276)
Q Consensus 99 ~d~~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~--~~~~~~~~~~~ 170 (276)
|+.|.+|.+..+ ++...+++|...|..+.|+|...+|+++++|++|++|+-. .-.+...+ +...+-+++|+
T Consensus 126 -DKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~ 204 (312)
T KOG0645|consen 126 -DKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFD 204 (312)
T ss_pred -CCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEec
Confidence 999999998754 4567889999999999999999999999999999999876 23566777 44467799999
Q ss_pred CCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCc--EE--EEee
Q 023822 171 DQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT--LL--STYN 245 (276)
Q Consensus 171 ~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~--~~~~ 245 (276)
+.|..|++++ |+++++|.....- ...|..++..++|. + ..|++++.|+.|++|.-...- +. ...+
T Consensus 205 ~~G~rl~s~sdD~tv~Iw~~~~~~--------~~~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~ 274 (312)
T KOG0645|consen 205 NIGSRLVSCSDDGTVSIWRLYTDL--------SGMHSRALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAK 274 (312)
T ss_pred CCCceEEEecCCcceEeeeeccCc--------chhcccceEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHh
Confidence 9997777776 8999999865311 12355688889998 4 469999999999999865321 11 1111
Q ss_pred cCCCCCCceEEEEECCC-CcEEEEecCCCCC
Q 023822 246 VKPVSRNSTLEASFSPE-GMFVISGRVSPFS 275 (276)
Q Consensus 246 ~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~v 275 (276)
....|...|++++|+|. ..+|++|+.||+|
T Consensus 275 ~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v 305 (312)
T KOG0645|consen 275 KEGAHEVDVNSVQWNPKVSNRLASGGDDGIV 305 (312)
T ss_pred hhcccccccceEEEcCCCCCceeecCCCceE
Confidence 22258889999999995 6799999999986
No 46
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=6.6e-34 Score=211.66 Aligned_cols=243 Identities=21% Similarity=0.239 Sum_probs=207.6
Q ss_pred cccceeeccCCCcEEEEEEcCCC---CEEEEeecCCeEEEEEccCCeee----eeeeeeeeceEEEEEeccCCeEEEecc
Q 023822 24 MEVGMSFRDYNGRISSMDFHKSS---SYLVTASDDESIRLYDVTAATCL----KTINSKKYGVDLVCFTSHPTTVIYSSK 96 (276)
Q Consensus 24 ~~~~~~~~~h~~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~ 96 (276)
.+..+++.||.++|.+++|.... ..|++++.|.++++|.++.++.. ....+|...|.++...+++..+++++.
T Consensus 134 Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~ 213 (423)
T KOG0313|consen 134 GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW 213 (423)
T ss_pred CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecc
Confidence 45567889999999998885433 35999999999999999876532 334589999999999999999999997
Q ss_pred CCCCCceEEEEccC-------------------------CceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEecc
Q 023822 97 NGWDESLRLLSLHD-------------------------NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR 151 (276)
Q Consensus 97 ~~~d~~i~~~d~~~-------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 151 (276)
|..|.+|+..+ +.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.
T Consensus 214 ---D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDle 289 (423)
T KOG0313|consen 214 ---DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLE 289 (423)
T ss_pred ---cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEee
Confidence 99999999321 234567889999999999987 6689999999999999999
Q ss_pred CceeeeeE-eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCC
Q 023822 152 AEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEG 228 (276)
Q Consensus 152 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg 228 (276)
++.....+ ......++.++|..+++++++ |..|++||.+++. .......+.+|.+.|.++.|+|.. ..|++++.|+
T Consensus 290 tg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~-gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~ 368 (423)
T KOG0313|consen 290 TGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD-GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN 368 (423)
T ss_pred cccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCC-CceeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence 99988887 445577999999999988888 9999999999985 456677888999999999999965 5678899999
Q ss_pred cEEEEECCCCc-EEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 229 HIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 229 ~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
++++||+++.+ ++..+. +|...|.++.|+. +.++++||.|..+
T Consensus 369 t~klWDvRS~k~plydI~---~h~DKvl~vdW~~-~~~IvSGGaD~~l 412 (423)
T KOG0313|consen 369 TVKLWDVRSTKAPLYDIA---GHNDKVLSVDWNE-GGLIVSGGADNKL 412 (423)
T ss_pred eEEEEEeccCCCcceeec---cCCceEEEEeccC-CceEEeccCcceE
Confidence 99999999888 888888 7999999999964 5689999999764
No 47
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.8e-35 Score=233.24 Aligned_cols=237 Identities=17% Similarity=0.264 Sum_probs=210.6
Q ss_pred eeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC----eeeeeeeeeeeceEEEEEeccC-CeEEEeccCCCCCce
Q 023822 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA----TCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGWDESL 103 (276)
Q Consensus 29 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~d~~i 103 (276)
.+.||+..|.+++...+|.+|++|+.|.++++|.++++ .+++...+|.+.|.+++++..+ .+|++++. |+++
T Consensus 360 ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~---D~tl 436 (775)
T KOG0319|consen 360 IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQ---DCTL 436 (775)
T ss_pred EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecC---CceE
Confidence 67899999999996667889999999999999987543 3456678999999999998765 46677776 9999
Q ss_pred EEEEccCCcee---------eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCC
Q 023822 104 RLLSLHDNKYL---------RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQ 172 (276)
Q Consensus 104 ~~~d~~~~~~~---------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~ 172 (276)
++|++...+.. .+...|...|++++.+|+.+++++|++|.+.++|+++..+....+ |..++.++.|+|.
T Consensus 437 K~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~ 516 (775)
T KOG0319|consen 437 KLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKN 516 (775)
T ss_pred EEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccc
Confidence 99999763211 123579999999999999999999999999999999988888888 6677889999999
Q ss_pred CcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCC
Q 023822 173 GLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251 (276)
Q Consensus 173 ~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 251 (276)
.+++++++ |++|++|.+.++.+ +..+.+|...|..+.|-.+|+.|++++.||-|++|+++++.++.++. .|.
T Consensus 517 dq~laT~SgD~TvKIW~is~fSC----lkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD---~H~ 589 (775)
T KOG0319|consen 517 DQLLATCSGDKTVKIWSISTFSC----LKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD---AHN 589 (775)
T ss_pred cceeEeccCCceEEEEEecccee----eeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh---hcc
Confidence 99998888 99999999999887 78889999999999999999999999999999999999999999999 899
Q ss_pred CceEEEEECCCCcEEEEecCCCCC
Q 023822 252 NSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 252 ~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
..|++++-+|.+.++++|+.||-+
T Consensus 590 DrvWaL~~~~~~~~~~tgg~Dg~i 613 (775)
T KOG0319|consen 590 DRVWALSVSPLLDMFVTGGGDGRI 613 (775)
T ss_pred ceeEEEeecCccceeEecCCCeEE
Confidence 999999999999999999999853
No 48
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.1e-33 Score=214.50 Aligned_cols=249 Identities=16% Similarity=0.222 Sum_probs=208.2
Q ss_pred hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe--eeeeeeeeeeceEEEEEeccCCeEEEeccCCC
Q 023822 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW 99 (276)
Q Consensus 22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 99 (276)
.+......+.+|..+++-..|+|.|.++|+|...|+|||||....+ +..+++...++|..++|+++++++++.+++ .
T Consensus 47 ~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEG-r 125 (603)
T KOG0318|consen 47 DNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEG-R 125 (603)
T ss_pred CCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecC-c
Confidence 4455567788999999999999999999999999999999986533 334567778899999999999999998863 2
Q ss_pred CCceEEEEccCCceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEE
Q 023822 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVF 176 (276)
Q Consensus 100 d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l 176 (276)
++..+++-.+++..+-.+.+|...|++++|-|... .+++|+.|++|.+|+=...+....+ |..-+.++.|+|||.++
T Consensus 126 erfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~F 205 (603)
T KOG0318|consen 126 ERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRF 205 (603)
T ss_pred cceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeE
Confidence 44455555557777889999999999999999776 7999999999999986665555555 55568899999999877
Q ss_pred EEee-CCeEEEEecccCCCCCeeeeee---cCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC-----
Q 023822 177 AVAF-GGYIRMFDARKYEKGPFDIFSV---GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK----- 247 (276)
Q Consensus 177 ~~~~-d~~i~~~d~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----- 247 (276)
++.. ||++.+||=.+++. +..+ .+|.+.|.+++|+||++.+++++.|.+++|||+.+.++++++...
T Consensus 206 at~gsDgki~iyDGktge~----vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~d 281 (603)
T KOG0318|consen 206 ATAGSDGKIYIYDGKTGEK----VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVED 281 (603)
T ss_pred EEecCCccEEEEcCCCccE----EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhc
Confidence 7666 99999999998775 4444 489999999999999999999999999999999887776654321
Q ss_pred -----------------------------------CCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 248 -----------------------------------PVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 248 -----------------------------------~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
.+|...|+++..+||+++|++|+.||.+
T Consensus 282 qqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I 344 (603)
T KOG0318|consen 282 QQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHI 344 (603)
T ss_pred eEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceE
Confidence 1688899999999999999999999975
No 49
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-33 Score=205.73 Aligned_cols=261 Identities=18% Similarity=0.265 Sum_probs=220.0
Q ss_pred CCcccCcccceeeeeehH-----HHhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeee
Q 023822 1 MVGSQSEREDKVSLELSE-----EILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK 75 (276)
Q Consensus 1 ivg~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 75 (276)
|||+|+.-.....+...+ .....+.+...+..|.++|++++.+ +.++|+|+.|-+|+|||+.+...+..+..|
T Consensus 5 IvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~H 82 (362)
T KOG0294|consen 5 IVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSH 82 (362)
T ss_pred EEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceecc
Confidence 577777766555444433 2234456678889999999999996 789999999999999999999999999999
Q ss_pred eeceEEEEEeccCC--eEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc
Q 023822 76 KYGVDLVCFTSHPT--TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE 153 (276)
Q Consensus 76 ~~~v~~~~~~~~~~--~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 153 (276)
.+.|+++.|.+... +|++++. ||.|.+|+....+.+..+++|.+.|+.++.+|.+++.++.+.|+.+++||+-.+
T Consensus 83 agsitaL~F~~~~S~shLlS~sd---DG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 83 AGSITALKFYPPLSKSHLLSGSD---DGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred ccceEEEEecCCcchhheeeecC---CCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence 99999999998876 8999998 999999999999999999999999999999999999999999999999999988
Q ss_pred eeeeeEeec-CCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEE
Q 023822 154 KCQGLLRVQ-GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV 232 (276)
Q Consensus 154 ~~~~~~~~~-~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 232 (276)
+.-...... ....+.|+|.|..++.+....|-+|.+.+.. ++..-..+..+.++.|.. +.+|++|..|+.|.+
T Consensus 160 r~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~-----v~~~i~~~~r~l~~~~l~-~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 160 RVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNAS-----VFREIENPKRILCATFLD-GSELLVGGDNEWISL 233 (362)
T ss_pred ccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHh-----HhhhhhccccceeeeecC-CceEEEecCCceEEE
Confidence 877666433 3446999999999999998899999988744 222222234567777764 567999999999999
Q ss_pred EECCCCcEEEEeecCCCCCCceEEEEE--CCCCcEEEEecCCCCC
Q 023822 233 LDSFRGTLLSTYNVKPVSRNSTLEASF--SPEGMFVISGRVSPFS 275 (276)
Q Consensus 233 ~d~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~~l~~~~~dg~v 275 (276)
||..+..+...+. +|...|-++.+ .|++.+|+++|.||.+
T Consensus 234 ~D~ds~~~~~~~~---AH~~RVK~i~~~~~~~~~~lvTaSSDG~I 275 (362)
T KOG0294|consen 234 KDTDSDTPLTEFL---AHENRVKDIASYTNPEHEYLVTASSDGFI 275 (362)
T ss_pred eccCCCccceeee---cchhheeeeEEEecCCceEEEEeccCceE
Confidence 9999999999888 89999999984 5788999999999985
No 50
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.1e-32 Score=240.45 Aligned_cols=239 Identities=13% Similarity=0.176 Sum_probs=195.9
Q ss_pred CCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEec-cCCeEEEeccCCCCCceEEEEccC
Q 023822 33 YNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHD 110 (276)
Q Consensus 33 h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~~~d~~~ 110 (276)
+...|.+++|++ ++.+|++++.||+|++||+.+++.+..+..|...|.+++|+| ++..|++++. |+.|++||+++
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~---Dg~v~iWd~~~ 607 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD---DGSVKLWSINQ 607 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC---CCEEEEEECCC
Confidence 346899999987 578999999999999999999999999999999999999997 6789999998 99999999999
Q ss_pred CceeeeecccCcceEEEEec-cCCCEEEEeeCCCeEEEEeccCce-eeeeE--eecCCCeeEecCCCcEEEEeeCCeEEE
Q 023822 111 NKYLRYFKGHHDRVVSLSLC-SSKDCFISGSLDRTVLLWDQRAEK-CQGLL--RVQGRPAAAYDDQGLVFAVAFGGYIRM 186 (276)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~--~~~~~~~~~~~~~~~~l~~~~d~~i~~ 186 (276)
+..+..+..+ ..+.++.|+ +++.+|++|+.|+.|++||++..+ ....+ +...+..+.|.+...+++++.|+.|++
T Consensus 608 ~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~iki 686 (793)
T PLN00181 608 GVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKL 686 (793)
T ss_pred CcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEE
Confidence 9888888744 678999995 578899999999999999998765 34444 455677889975555555556999999
Q ss_pred EecccCCC--CCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC----------CCCCCce
Q 023822 187 FDARKYEK--GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK----------PVSRNST 254 (276)
Q Consensus 187 ~d~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~~~~v 254 (276)
||++.... ....+..+.+|...+..++|+|++++|++|+.|+.|++|+......+..+... ..+...|
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V 766 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFI 766 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEE
Confidence 99975321 11225567788889999999999999999999999999998766544333210 1245679
Q ss_pred EEEEECCCCcEEEEecCCCCC
Q 023822 255 LEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 255 ~~~~~s~~g~~l~~~~~dg~v 275 (276)
.+++|+|++..|++|+.||.+
T Consensus 767 ~~v~ws~~~~~lva~~~dG~I 787 (793)
T PLN00181 767 SSVCWRGQSSTLVAANSTGNI 787 (793)
T ss_pred EEEEEcCCCCeEEEecCCCcE
Confidence 999999999999999999986
No 51
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=8.9e-35 Score=214.59 Aligned_cols=235 Identities=18% Similarity=0.236 Sum_probs=194.8
Q ss_pred ccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCc
Q 023822 23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES 102 (276)
Q Consensus 23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~ 102 (276)
.+...+.+.||++.|.|+.|. .+.+++|+.|.+|++||+++++++.++-.|...|..+.| ++.++++++. |.+
T Consensus 226 ~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf--~ng~mvtcSk---Drs 298 (499)
T KOG0281|consen 226 SLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRF--SNGYMVTCSK---DRS 298 (499)
T ss_pred cHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEE--eCCEEEEecC---Cce
Confidence 456677889999999999996 469999999999999999999999999999999999999 4678999998 999
Q ss_pred eEEEEccCCc---eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEe
Q 023822 103 LRLLSLHDNK---YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA 179 (276)
Q Consensus 103 i~~~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 179 (276)
+.+||+.... ..+.+.+|...|+.+.| +.+++++++.|.+|++|++.+.+.+.+++.+..-..+.--.++++++|
T Consensus 299 iaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSG 376 (499)
T KOG0281|consen 299 IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSG 376 (499)
T ss_pred eEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEec
Confidence 9999997764 34567899999999999 456999999999999999999999999965554434444467888888
Q ss_pred e-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee------cCCCCCC
Q 023822 180 F-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN------VKPVSRN 252 (276)
Q Consensus 180 ~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~~ 252 (276)
+ |.+|++||+..+.. ...+++|+.-|.++.|. .+.+++|+.||.|++||+..+....... ....|.+
T Consensus 377 SSDntIRlwdi~~G~c----LRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsg 450 (499)
T KOG0281|consen 377 SSDNTIRLWDIECGAC----LRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSG 450 (499)
T ss_pred CCCceEEEEeccccHH----HHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccc
Confidence 7 99999999999886 77788999999999995 5679999999999999998765432111 0114788
Q ss_pred ceEEEEECCCCcEEEEecCCCC
Q 023822 253 STLEASFSPEGMFVISGRVSPF 274 (276)
Q Consensus 253 ~v~~~~~s~~g~~l~~~~~dg~ 274 (276)
.|..+.|. ...+++++.|.+
T Consensus 451 RVFrLQFD--~fqIvsssHddt 470 (499)
T KOG0281|consen 451 RVFRLQFD--EFQIISSSHDDT 470 (499)
T ss_pred eeEEEeec--ceEEEeccCCCe
Confidence 99999984 456777776655
No 52
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-34 Score=233.11 Aligned_cols=241 Identities=17% Similarity=0.242 Sum_probs=216.1
Q ss_pred eeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEc
Q 023822 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 108 (276)
Q Consensus 29 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~ 108 (276)
.|...+.+|..++|+|...+++++-..|.|++||..-+.++..+..|.++|..+.|+|....+++|+. |..|++|+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGD---DykIkVWnY 80 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGD---DYKIKVWNY 80 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCC---ccEEEEEec
Confidence 45556788999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred cCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEE
Q 023822 109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIR 185 (276)
Q Consensus 109 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~ 185 (276)
.+.+++.++.+|-+.|..+.|++.-.+++++|.|.+|+||+..+.+++..+ |.+-+.|..|+|...++++++ |.+|+
T Consensus 81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVR 160 (1202)
T ss_pred ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEE
Confidence 999999999999999999999999999999999999999999999999998 666688999999888888888 99999
Q ss_pred EEecccCCCC-------------------------CeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcE
Q 023822 186 MFDARKYEKG-------------------------PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL 240 (276)
Q Consensus 186 ~~d~~~~~~~-------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 240 (276)
+||+...++. ....+.+++|...|+-++|+|.-.++++|+.|..|++|.+...+.
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence 9998653311 122345678999999999999999999999999999999865443
Q ss_pred --EEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 241 --LSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 241 --~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
+.+.. +|.+.|.++-|+|...++++.|+|+++
T Consensus 241 WEvDtcr---gH~nnVssvlfhp~q~lIlSnsEDksi 274 (1202)
T KOG0292|consen 241 WEVDTCR---GHYNNVSSVLFHPHQDLILSNSEDKSI 274 (1202)
T ss_pred eeehhhh---cccCCcceEEecCccceeEecCCCccE
Confidence 33344 899999999999999999999999975
No 53
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.6e-33 Score=234.11 Aligned_cols=242 Identities=17% Similarity=0.239 Sum_probs=207.5
Q ss_pred ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC------------------CeeeeeeeeeeeceEEEEEec
Q 023822 25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA------------------ATCLKTINSKKYGVDLVCFTS 86 (276)
Q Consensus 25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~~ 86 (276)
+.+.++..|.+.|+|+.|+|||++||+|++|+.|.||.... .++...+.+|.+.|..++|+|
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 45667788999999999999999999999999999999762 246778889999999999999
Q ss_pred cCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee-----
Q 023822 87 HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV----- 161 (276)
Q Consensus 87 ~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----- 161 (276)
++.++++++. |++|.+|+..+.+.+..+++|.+.|..+.|.|-|++||+-+.|++|++|++......+.+..
T Consensus 140 ~~~~lvS~s~---DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~ 216 (942)
T KOG0973|consen 140 DDSLLVSVSL---DNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES 216 (942)
T ss_pred CccEEEEecc---cceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhC
Confidence 9999999998 99999999999999999999999999999999999999999999999999887666665511
Q ss_pred ---cCCCeeEecCCCcEEEEee-----CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC-----Cc---------
Q 023822 162 ---QGRPAAAYDDQGLVFAVAF-----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-----GR--------- 219 (276)
Q Consensus 162 ---~~~~~~~~~~~~~~l~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~--------- 219 (276)
.....+.|+|||++|++.. -..+.+.+-.+.+. ...+-+|..++.++.|+|. .+
T Consensus 217 ~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~----~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~ 292 (942)
T KOG0973|consen 217 PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKV----DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNC 292 (942)
T ss_pred CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCcee----eeeeecCCCceEEEEeChHHhccccccCCccCCCc
Confidence 1234789999999999887 25778887765443 5567789999999999981 11
Q ss_pred ---EEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 220 ---LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 220 ---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
.+|+|+.|++|.||.....+++..... -....|.+++|+|||..|+++|.||+|
T Consensus 293 ~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~--lf~~SI~DmsWspdG~~LfacS~DGtV 349 (942)
T KOG0973|consen 293 YYCIAAVGSQDRSLSVWNTALPRPLFVIHN--LFNKSIVDMSWSPDGFSLFACSLDGTV 349 (942)
T ss_pred ceEEEEEecCCccEEEEecCCCCchhhhhh--hhcCceeeeeEcCCCCeEEEEecCCeE
Confidence 578899999999999877777765543 356889999999999999999999986
No 54
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.1e-35 Score=216.37 Aligned_cols=221 Identities=16% Similarity=0.301 Sum_probs=193.1
Q ss_pred CCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc
Q 023822 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 112 (276)
Q Consensus 33 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~ 112 (276)
....|+|+.+. ...+++|..|++|+|||..+..++..+.+|.+.|.|+.| +.+.+++|+. |.+|++||.++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSS---DsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSS---DSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCC---CceEEEEeccCCc
Confidence 45789999985 568999999999999999999999999999999999999 6678888888 9999999999999
Q ss_pred eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee---eE--eecCCCeeEecCCCcEEEEee-CCeEEE
Q 023822 113 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG---LL--RVQGRPAAAYDDQGLVFAVAF-GGYIRM 186 (276)
Q Consensus 113 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~ 186 (276)
++.++-+|...|..+.|+ ..++++++.|.++.+||+.....+. .+ |...++.+.|+.. ++++++ |.+|++
T Consensus 269 ~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k--yIVsASgDRTikv 344 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKV 344 (499)
T ss_pred hhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc--eEEEecCCceEEE
Confidence 999999999999999995 4689999999999999998775332 22 5555667777654 666555 999999
Q ss_pred EecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEE
Q 023822 187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV 266 (276)
Q Consensus 187 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 266 (276)
|++.+.+. +..+.+|...|.|+.+ .|+++++|+.|.+|++||+..|.++..++ +|+.-|.++.| |.+.+
T Consensus 345 W~~st~ef----vRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe---GHEeLvRciRF--d~krI 413 (499)
T KOG0281|consen 345 WSTSTCEF----VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE---GHEELVRCIRF--DNKRI 413 (499)
T ss_pred Eeccceee----ehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh---chHHhhhheee--cCcee
Confidence 99999776 7778899999988887 58999999999999999999999999999 89999999999 55699
Q ss_pred EEecCCCCC
Q 023822 267 ISGRVSPFS 275 (276)
Q Consensus 267 ~~~~~dg~v 275 (276)
++|+.||.+
T Consensus 414 VSGaYDGki 422 (499)
T KOG0281|consen 414 VSGAYDGKI 422 (499)
T ss_pred eeccccceE
Confidence 999999976
No 55
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=7.1e-32 Score=221.14 Aligned_cols=232 Identities=12% Similarity=0.181 Sum_probs=179.4
Q ss_pred ccceeeccCCCcEEEEEEcCC-CCEEEEeecCCeEEEEEccCCe--------eeeeeeeeeeceEEEEEeccCCeE-EEe
Q 023822 25 EVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAAT--------CLKTINSKKYGVDLVCFTSHPTTV-IYS 94 (276)
Q Consensus 25 ~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l-~~~ 94 (276)
.....+.+|.++|.+++|+|+ +++||+|+.|++|+|||+.++. ++..+.+|...|.+++|+|++..+ +++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 456778999999999999996 7899999999999999997542 344677899999999999998865 567
Q ss_pred ccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecC--CCe-----e
Q 023822 95 SKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPA-----A 167 (276)
Q Consensus 95 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~-----~ 167 (276)
+. |+.|++||+++++....+. |...|.+++|+|+|++|++++.|+.|++||+++++.+..+..+. +.. .
T Consensus 145 S~---DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~ 220 (568)
T PTZ00420 145 GF---DSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWID 220 (568)
T ss_pred eC---CCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEee
Confidence 76 9999999999998777775 66789999999999999999999999999999998887774332 222 2
Q ss_pred EecCCCcEEEE-eeC----CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEE
Q 023822 168 AYDDQGLVFAV-AFG----GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS 242 (276)
Q Consensus 168 ~~~~~~~~l~~-~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 242 (276)
.|++++.++++ +.+ ++|++||++.... ++....+..+...+......++|.++++|+.|+.|++|++..+. +.
T Consensus 221 ~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~-pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~ 298 (568)
T PTZ00420 221 GLGGDDNYILSTGFSKNNMREMKLWDLKNTTS-ALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IR 298 (568)
T ss_pred eEcCCCCEEEEEEcCCCCccEEEEEECCCCCC-ceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EE
Confidence 34577665555 545 4799999996443 33344444444444445556678999999999999999998764 33
Q ss_pred EeecCCCCCCceEEEEECCCC
Q 023822 243 TYNVKPVSRNSTLEASFSPEG 263 (276)
Q Consensus 243 ~~~~~~~~~~~v~~~~~s~~g 263 (276)
.+... .+..+..+++|.|+-
T Consensus 299 ~l~~~-~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 299 KVNEY-KSCSPFRSFGFLPKQ 318 (568)
T ss_pred eeccc-ccCCCccceEEcccc
Confidence 33322 256788899999964
No 56
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-33 Score=219.65 Aligned_cols=229 Identities=17% Similarity=0.221 Sum_probs=201.4
Q ss_pred CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeee-eeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc
Q 023822 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 112 (276)
Q Consensus 34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~ 112 (276)
...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.. |...|.+++|+ ...+.+|+. ++.|..+|++..+
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr---~~~I~~~dvR~~~ 291 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSR---DGKILNHDVRISQ 291 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecC---CCcEEEEEEecch
Confidence 78999999999999999999999999999999999999988 99999999996 667778887 9999999999887
Q ss_pred eeee-ecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCC-CcEEEEee---CCeEE
Q 023822 113 YLRY-FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQ-GLVFAVAF---GGYIR 185 (276)
Q Consensus 113 ~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~-~~~l~~~~---d~~i~ 185 (276)
.... +.+|...|..++|+++++++|+|+.|+.+.|||....++...+ |...+..++|+|- ..+||+|. |+.|+
T Consensus 292 ~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~ 371 (484)
T KOG0305|consen 292 HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIK 371 (484)
T ss_pred hhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEE
Confidence 6554 8899999999999999999999999999999999887777777 6677889999994 45666665 89999
Q ss_pred EEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEe--ecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCC
Q 023822 186 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT--TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 263 (276)
Q Consensus 186 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 263 (276)
+||..++.. +.. ......|.++.|++..+.|+++ ..++.|.||+..+.+.+..+. +|...|..++++|||
T Consensus 372 fwn~~~g~~----i~~-vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~---gH~~RVl~la~SPdg 443 (484)
T KOG0305|consen 372 FWNTNTGAR----IDS-VDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL---GHTSRVLYLALSPDG 443 (484)
T ss_pred EEEcCCCcE----ecc-cccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec---CCcceeEEEEECCCC
Confidence 999997663 222 3345689999999998777764 457789999999999999998 899999999999999
Q ss_pred cEEEEecCCCCC
Q 023822 264 MFVISGRVSPFS 275 (276)
Q Consensus 264 ~~l~~~~~dg~v 275 (276)
..+++|+.|.++
T Consensus 444 ~~i~t~a~DETl 455 (484)
T KOG0305|consen 444 ETIVTGAADETL 455 (484)
T ss_pred CEEEEecccCcE
Confidence 999999999875
No 57
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.9e-33 Score=193.98 Aligned_cols=237 Identities=15% Similarity=0.182 Sum_probs=206.0
Q ss_pred cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (276)
Q Consensus 24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i 103 (276)
-..++++.+|...|..++.+.|+..|++|+.|..+.+||+++|+..+.+.+|.+.|+.+.|+.+...+++++. |..+
T Consensus 49 g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sgsf---D~s~ 125 (307)
T KOG0316|consen 49 GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSF---DSSV 125 (307)
T ss_pred cceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccc---ccee
Confidence 4557889999999999999999999999999999999999999999999999999999999999999999988 9999
Q ss_pred EEEEccCC--ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEee-
Q 023822 104 RLLSLHDN--KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF- 180 (276)
Q Consensus 104 ~~~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 180 (276)
++||-++. ++++.+....+.|.++..+ +..+++|+.||+++.||++.++.....-.++++++.|+++++...++.
T Consensus 126 r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l 203 (307)
T KOG0316|consen 126 RLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSL 203 (307)
T ss_pred EEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeec
Confidence 99998764 6788888888999999884 567999999999999999999998888899999999999998777776
Q ss_pred CCeEEEEecccCCCCCeeeeeecCCCCC--ceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCc-eEEE
Q 023822 181 GGYIRMFDARKYEKGPFDIFSVGGDISD--ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS-TLEA 257 (276)
Q Consensus 181 d~~i~~~d~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-v~~~ 257 (276)
|+++++.|-.+++. +....+|... -..++++.....+++|++||.|++||+.+.+.+..+. .+... +.++
T Consensus 204 ~stlrLlDk~tGkl----L~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~---~~~~v~v~dl 276 (307)
T KOG0316|consen 204 DSTLRLLDKETGKL----LKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS---VVSTVIVTDL 276 (307)
T ss_pred cceeeecccchhHH----HHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeec---cCCceeEEee
Confidence 99999999998875 4444455433 2345677777889999999999999999999999888 45555 8999
Q ss_pred EECCCCcEEEEecCC
Q 023822 258 SFSPEGMFVISGRVS 272 (276)
Q Consensus 258 ~~s~~g~~l~~~~~d 272 (276)
+++|.-..|+++...
T Consensus 277 ~~hp~~~~f~~A~~~ 291 (307)
T KOG0316|consen 277 SCHPTMDDFITATGH 291 (307)
T ss_pred ecccCccceeEecCC
Confidence 999987666665543
No 58
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-33 Score=200.21 Aligned_cols=243 Identities=19% Similarity=0.278 Sum_probs=197.5
Q ss_pred cccceeeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEcc-CCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822 24 MEVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVT-AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101 (276)
Q Consensus 24 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~ 101 (276)
+.....+.- .+.+..++|++ ..+.+++++.||++++||+. ...++..++.|..+|.++.|++..+..+..+ +||+
T Consensus 51 i~e~~s~d~-~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts--SWD~ 127 (311)
T KOG0277|consen 51 IQECQSYDT-EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTS--SWDG 127 (311)
T ss_pred eEEEEeeec-ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEee--ccCC
Confidence 333444432 56789999998 45688899999999999965 3467888999999999999999766544444 3699
Q ss_pred ceEEEEccCCceeeeecccCcceEEEEeccC-CCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCC-cEEE
Q 023822 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQG-LVFA 177 (276)
Q Consensus 102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~-~~l~ 177 (276)
+|++|+...++.+.++.+|...|....|+|. .+.+++++.|+.+++||++.......+ |...+.++.|+.-+ .+++
T Consensus 128 TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~ 207 (311)
T KOG0277|consen 128 TIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLA 207 (311)
T ss_pred ceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEE
Confidence 9999999999999999999999999999994 679999999999999999976444445 44457788888744 5666
Q ss_pred Eee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcEEEEECCCC-cEEEEeecCCCCCCce
Q 023822 178 VAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNST 254 (276)
Q Consensus 178 ~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v 254 (276)
++. |+.|+.||+++.+.+ ++.+.+|...|..++|||.. ..||+++.|-+++|||...+ ..+.+.. .|..-+
T Consensus 208 Tg~vd~~vr~wDir~~r~p---l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~---~HtEFv 281 (311)
T KOG0277|consen 208 TGGVDNLVRGWDIRNLRTP---LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD---HHTEFV 281 (311)
T ss_pred ecCCCceEEEEehhhcccc---ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh---ccceEE
Confidence 666 999999999987643 66778999999999999964 67899999999999998744 4455555 588889
Q ss_pred EEEEECC-CCcEEEEecCCCCC
Q 023822 255 LEASFSP-EGMFVISGRVSPFS 275 (276)
Q Consensus 255 ~~~~~s~-~g~~l~~~~~dg~v 275 (276)
..+.||+ ++.++|+++.|+.+
T Consensus 282 ~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 282 CGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred eccccccccCceeeecccccce
Confidence 9999998 56799999999864
No 59
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=212.38 Aligned_cols=254 Identities=20% Similarity=0.250 Sum_probs=209.1
Q ss_pred eehHHHhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEe
Q 023822 15 ELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYS 94 (276)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 94 (276)
.+++..........+|.|-.++|++++|.+++..+++++.|+.+++|++...+...++.+|...|+++.|......++++
T Consensus 200 k~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsg 279 (459)
T KOG0288|consen 200 KLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSG 279 (459)
T ss_pred hhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeec
Confidence 34444444466777888888999999999999999999999999999999999999999999999999999877778888
Q ss_pred ccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee-cCCCeeEecCCC
Q 023822 95 SKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV-QGRPAAAYDDQG 173 (276)
Q Consensus 95 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~ 173 (276)
+. |.+|++||+....+..++. ....+..+... ...++++-.|++|++||+++..+...... +.+.++..++++
T Consensus 280 s~---DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g 353 (459)
T KOG0288|consen 280 SA---DRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDG 353 (459)
T ss_pred cc---cchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCC
Confidence 87 9999999999988877765 34455666665 45688999999999999999999888844 457899999999
Q ss_pred cEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCC
Q 023822 174 LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN 252 (276)
Q Consensus 174 ~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 252 (276)
.-+.+++ |.++.+.|+++.+........-.......+.+.|||++.|+++||.||.|+||++.++++...+.... ...
T Consensus 354 ~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~-s~~ 432 (459)
T KOG0288|consen 354 LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST-SNA 432 (459)
T ss_pred eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC-CCc
Confidence 7666666 99999999998654211111111122358889999999999999999999999999999998887432 223
Q ss_pred ceEEEEECCCCcEEEEecCCCCC
Q 023822 253 STLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 253 ~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
.|++++|+|.|..|++++.+++|
T Consensus 433 aI~s~~W~~sG~~Llsadk~~~v 455 (459)
T KOG0288|consen 433 AITSLSWNPSGSGLLSADKQKAV 455 (459)
T ss_pred ceEEEEEcCCCchhhcccCCcce
Confidence 69999999999999999998876
No 60
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=208.04 Aligned_cols=230 Identities=21% Similarity=0.300 Sum_probs=209.1
Q ss_pred CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822 35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL 114 (276)
Q Consensus 35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~ 114 (276)
..+.++...|..+.+++|+.|.++.++|...++.+..+++|...|+.+.++|+...+++++. |..|++|........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSa---d~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASA---DEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCC---cceEEeeccccccCc
Confidence 46888888888789999999999999999999999999999999999999999999999998 999999999888878
Q ss_pred eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee----cCCCeeEecCCCcEEEEee-CCeEEEEec
Q 023822 115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV----QGRPAAAYDDQGLVFAVAF-GGYIRMFDA 189 (276)
Q Consensus 115 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~-d~~i~~~d~ 189 (276)
.....|..+|+.+..+|.|.||++++.|+...+.|++++..+..... -...+.+|+|||.++.++. |+.+++||+
T Consensus 297 ~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence 88889999999999999999999999999999999999988776633 2356899999999999998 999999999
Q ss_pred ccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEe
Q 023822 190 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 269 (276)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 269 (276)
..... ...+++|.++|..++|+.+|-+|+++++|+.|++||++..+..+++... ....+.++.|.+.|++|+.+
T Consensus 377 ks~~~----~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~--~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 377 KSQTN----VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLD--EKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred CCccc----cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecc--ccccceeEEEcCCCCeEEee
Confidence 98664 7788899999999999999999999999999999999999988888753 23479999999999999999
Q ss_pred cCCC
Q 023822 270 RVSP 273 (276)
Q Consensus 270 ~~dg 273 (276)
+.|=
T Consensus 451 g~~l 454 (506)
T KOG0289|consen 451 GSDL 454 (506)
T ss_pred ccee
Confidence 8763
No 61
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-32 Score=219.87 Aligned_cols=235 Identities=16% Similarity=0.287 Sum_probs=210.8
Q ss_pred eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEE
Q 023822 28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 107 (276)
Q Consensus 28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d 107 (276)
..+.||...|.+++++.+...+++|+ .+.+++|+..+.++++++... .+.+..|.|.+++++.|.. .|.+.+||
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k---~Gel~vfd 440 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTK---NGELQVFD 440 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEecc---CCceEEEE
Confidence 45679999999999999887777775 468999999999999999765 7899999999999999999 99999999
Q ss_pred ccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCcee-----e--------eeE-eecCCCeeEecCCC
Q 023822 108 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC-----Q--------GLL-RVQGRPAAAYDDQG 173 (276)
Q Consensus 108 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~--------~~~-~~~~~~~~~~~~~~ 173 (276)
+.+...+.+++.|.+.|++++.+||+..+++|+.|.+|++||..-... . .++ -...+.++.++||+
T Consensus 441 laS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg 520 (888)
T KOG0306|consen 441 LASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG 520 (888)
T ss_pred eehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC
Confidence 999999999999999999999999999999999999999999752211 1 111 23456799999999
Q ss_pred cEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCC
Q 023822 174 LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN 252 (276)
Q Consensus 174 ~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 252 (276)
++++++- |+++++|-+.+.+- ...+.+|.-||.|+.++||++++++||.|..|++|-+.-|.+-+.+. +|..
T Consensus 521 k~LaVsLLdnTVkVyflDtlKF----flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f---AHdD 593 (888)
T KOG0306|consen 521 KLLAVSLLDNTVKVYFLDTLKF----FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF---AHDD 593 (888)
T ss_pred cEEEEEeccCeEEEEEecceee----eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh---cccC
Confidence 9999999 99999999998664 67788999999999999999999999999999999999999999998 8999
Q ss_pred ceEEEEECCCCcEEEEecCCCCC
Q 023822 253 STLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 253 ~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
.|.++.|-|+...+.++|.|+.|
T Consensus 594 Svm~V~F~P~~~~FFt~gKD~kv 616 (888)
T KOG0306|consen 594 SVMSVQFLPKTHLFFTCGKDGKV 616 (888)
T ss_pred ceeEEEEcccceeEEEecCcceE
Confidence 99999999999999999999875
No 62
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=209.21 Aligned_cols=241 Identities=16% Similarity=0.257 Sum_probs=198.6
Q ss_pred ccceeeccCCCcEEEEEEcCCC-CEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822 25 EVGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (276)
Q Consensus 25 ~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i 103 (276)
..+..|.||.+.|.|++=+|.. ..+++|+.||.|+|||+....+..++..|.+.|..+++.. ..+++++. |.+|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgd---DKtv 131 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGD---DKTV 131 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecC---Ccce
Confidence 3456679999999999999976 7899999999999999999999999999999999999975 56666666 7777
Q ss_pred EEEEcc--------------------------------------CCceeeeecccCcceEEEEeccCCC-EEEEeeCCCe
Q 023822 104 RLLSLH--------------------------------------DNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRT 144 (276)
Q Consensus 104 ~~~d~~--------------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~ 144 (276)
+.|.++ ...+++.+.-..+.|.++.|+|-.. .|++|..|+.
T Consensus 132 K~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 132 KQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred eeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence 777633 2223333444445678888988655 7788889999
Q ss_pred EEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEE
Q 023822 145 VLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLML 222 (276)
Q Consensus 145 i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 222 (276)
|.+||+++..+++.+ .....+.++|+|.+..++++. |..++.||++..+.+ .....+|.+.|.++.|||.|+.++
T Consensus 212 IvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p---~~v~~dhvsAV~dVdfsptG~Efv 288 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRP---LNVHKDHVSAVMDVDFSPTGQEFV 288 (433)
T ss_pred eEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhccc---chhhcccceeEEEeccCCCcchhc
Confidence 999999999998877 455567899999887777777 899999999986642 444567889999999999999999
Q ss_pred EeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 223 LTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 223 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
+||.|.+|+||....+.....+... --..|.++.||.|.+++++||+|+.|
T Consensus 289 sgsyDksIRIf~~~~~~SRdiYhtk--RMq~V~~Vk~S~Dskyi~SGSdd~nv 339 (433)
T KOG0268|consen 289 SGSYDKSIRIFPVNHGHSRDIYHTK--RMQHVFCVKYSMDSKYIISGSDDGNV 339 (433)
T ss_pred cccccceEEEeecCCCcchhhhhHh--hhheeeEEEEeccccEEEecCCCcce
Confidence 9999999999999888776655432 24579999999999999999999976
No 63
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.9e-32 Score=218.29 Aligned_cols=243 Identities=21% Similarity=0.254 Sum_probs=212.9
Q ss_pred hccccceeeccCCCcEEEEEE-cCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCC
Q 023822 22 QSMEVGMSFRDYNGRISSMDF-HKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD 100 (276)
Q Consensus 22 ~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d 100 (276)
..+++.+.+-|..+.|..++| .|+.++||.++..+.+|+|+..+..+. .+.+|...|.++....+|..|++++. |
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sK---D 386 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSK---D 386 (775)
T ss_pred cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecC---C
Confidence 456777788898999999998 468899999999999999998877765 88999999999997778889999999 9
Q ss_pred CceEEEEccCCc----eeeeecccCcceEEEEeccCC-CEEEEeeCCCeEEEEeccCceee-----------eeEeecCC
Q 023822 101 ESLRLLSLHDNK----YLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQ-----------GLLRVQGR 164 (276)
Q Consensus 101 ~~i~~~d~~~~~----~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~ 164 (276)
.++++|.++++. ++....+|.+.|.+++++..+ .+|++++.|+++++|++...+.. ...|...+
T Consensus 387 ~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdI 466 (775)
T KOG0319|consen 387 KSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDI 466 (775)
T ss_pred ceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccc
Confidence 999999885443 345667899999999997655 48999999999999999872211 11177789
Q ss_pred CeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEE
Q 023822 165 PAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST 243 (276)
Q Consensus 165 ~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 243 (276)
++++++|+..++++++ |++.++|++..... ...+.+|...+.++.|+|..+.++++|.|++|+||.+.+..++++
T Consensus 467 N~Vaia~ndkLiAT~SqDktaKiW~le~~~l----~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT 542 (775)
T KOG0319|consen 467 NCVAIAPNDKLIATGSQDKTAKIWDLEQLRL----LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKT 542 (775)
T ss_pred cceEecCCCceEEecccccceeeecccCceE----EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeee
Confidence 9999999999999999 99999999995443 677889999999999999999999999999999999999999999
Q ss_pred eecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 244 YNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 244 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
+. +|...|..+.|-.+|+.|++++.||.+
T Consensus 543 ~e---GH~~aVlra~F~~~~~qliS~~adGli 571 (775)
T KOG0319|consen 543 FE---GHTSAVLRASFIRNGKQLISAGADGLI 571 (775)
T ss_pred ec---CccceeEeeeeeeCCcEEEeccCCCcE
Confidence 99 899999999999999999999999975
No 64
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.6e-31 Score=188.93 Aligned_cols=238 Identities=15% Similarity=0.218 Sum_probs=206.5
Q ss_pred ccccceeeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822 23 SMEVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101 (276)
Q Consensus 23 ~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~ 101 (276)
.+......++|.+.|-.++|+| ....|++++.|.+|++||+..+++...+....+ -.-+.|+|++++++++.. |.
T Consensus 53 r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e-ni~i~wsp~g~~~~~~~k---dD 128 (313)
T KOG1407|consen 53 RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE-NINITWSPDGEYIAVGNK---DD 128 (313)
T ss_pred hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc-ceEEEEcCCCCEEEEecC---cc
Confidence 3344455789999999999998 567899999999999999999999988876543 445889999999999998 99
Q ss_pred ceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCC--eeEecCCCcEEEEe
Q 023822 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFAVA 179 (276)
Q Consensus 102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~ 179 (276)
.|...|.++.+.....+ ....+..++|+.++++|+.....|.|.|.....-+++..+..++.. |+.|+|+|+++++|
T Consensus 129 ~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~G 207 (313)
T KOG1407|consen 129 RITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATG 207 (313)
T ss_pred cEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeec
Confidence 99999999888776654 4566788999988888777777899999999999999998666655 67889999999999
Q ss_pred e-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEE
Q 023822 180 F-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 258 (276)
Q Consensus 180 ~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 258 (276)
+ |..+.+||+...-+ ...+..+.-+|..+.|+.+|++||++|+|-.|-|=++++|..+..+. +.++...++
T Consensus 208 sADAlvSLWD~~ELiC----~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~----~~~~t~tVA 279 (313)
T KOG1407|consen 208 SADALVSLWDVDELIC----ERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP----CEGPTFTVA 279 (313)
T ss_pred cccceeeccChhHhhh----heeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee----ccCCceeEE
Confidence 9 99999999987554 55667788899999999999999999999999999999999999998 889999999
Q ss_pred ECCCCcEEEEecCCC
Q 023822 259 FSPEGMFVISGRVSP 273 (276)
Q Consensus 259 ~s~~g~~l~~~~~dg 273 (276)
|+|...+||.+.+|.
T Consensus 280 WHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 280 WHPKRPLLAYACDDK 294 (313)
T ss_pred ecCCCceeeEEecCC
Confidence 999999999988875
No 65
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=3.5e-32 Score=198.06 Aligned_cols=241 Identities=18% Similarity=0.260 Sum_probs=199.4
Q ss_pred eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC------------C------eeeeeeeeeeeceEEEEEeccCC
Q 023822 28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA------------A------TCLKTINSKKYGVDLVCFTSHPT 89 (276)
Q Consensus 28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~ 89 (276)
..+..|++++.+.+|+|||.++|+|+.|-.|+|.|++. + -.++++..|..+|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 45678999999999999999999999999999999861 1 24567778889999999999999
Q ss_pred eEEEeccCCCCCceEEEEccCCceeeeec--ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-----eec
Q 023822 90 TVIYSSKNGWDESLRLLSLHDNKYLRYFK--GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-----RVQ 162 (276)
Q Consensus 90 ~l~~~~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~ 162 (276)
.|++++. |++|+++|+......+.++ ....+|.++.|+|.|.+|+.|.....+++||+++.++...- +..
T Consensus 186 ILiS~sr---D~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 186 ILISGSR---DNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred eEEeccC---CCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 9999998 9999999987654333222 24568999999999999999999999999999998876544 556
Q ss_pred CCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEE
Q 023822 163 GRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL 241 (276)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 241 (276)
.+.++.+++.+++.++++ ||.|++||--+.++ +..+........|.+..|..+|+|+++.+.|..+++|++.+++.+
T Consensus 263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC--v~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC--VRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred ceeEEEecCCccEEEEeccCCcEEeeccccHHH--HHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence 688999999999988888 99999999766554 112222334568999999999999999999999999999999888
Q ss_pred EEeecC----------------------------------------------CCCCCceEEEEECCCCcEEEEecCCC
Q 023822 242 STYNVK----------------------------------------------PVSRNSTLEASFSPEGMFVISGRVSP 273 (276)
Q Consensus 242 ~~~~~~----------------------------------------------~~~~~~v~~~~~s~~g~~l~~~~~dg 273 (276)
..+... .+|.+.+..+.-||.+.-+.+|+.|-
T Consensus 341 ~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 341 KEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred EEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 876532 15777888888888888888888773
No 66
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=1.5e-32 Score=212.11 Aligned_cols=242 Identities=17% Similarity=0.295 Sum_probs=189.0
Q ss_pred ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCee----eeee-eeeeeceEEEEEeccCCeEEEeccCCC
Q 023822 25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC----LKTI-NSKKYGVDLVCFTSHPTTVIYSSKNGW 99 (276)
Q Consensus 25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~ 99 (276)
.....+++|+..|.++++.|.|..|++|+.|.+|++||+..... -+.+ ......|.++.|++.+..|++.+.
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg--- 234 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG--- 234 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec---
Confidence 34456889999999999999999999999999999999874321 1222 233457999999999999999887
Q ss_pred CCceEEEEccCCceee------------eecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeee-eEe-----
Q 023822 100 DESLRLLSLHDNKYLR------------YFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQG-LLR----- 160 (276)
Q Consensus 100 d~~i~~~d~~~~~~~~------------~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~-~~~----- 160 (276)
....+++|-...+... .-++|...++|.+|+|..+ .|++++.||++++||+...+... .+.
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~ 314 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG 314 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence 8899999966544332 2357999999999999765 89999999999999998764333 221
Q ss_pred --ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCC--CceEEEECCCCcEEEEeecCCcEEEEEC
Q 023822 161 --VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDIS--DANVVKFSNDGRLMLLTTMEGHIHVLDS 235 (276)
Q Consensus 161 --~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 235 (276)
.-.+..++|++++.++|++. ||.|.+|+.++....+.. .....|.. .|++++||++|++|++-+.|+++++||+
T Consensus 315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~-~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVM-KVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccce-EeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence 12345899999999999888 999999998765543332 23345554 8999999999999999999999999999
Q ss_pred CCCc-EEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822 236 FRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISGRV 271 (276)
Q Consensus 236 ~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 271 (276)
+..+ ++......+ ..-+-+.++|||+.++|++|+.
T Consensus 394 rq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 394 RQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred cccccchhhhcCCC-ccCCCCccccCCCceEEEeccc
Confidence 8754 444444322 4456678999999999999875
No 67
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.8e-30 Score=181.52 Aligned_cols=238 Identities=18% Similarity=0.274 Sum_probs=197.9
Q ss_pred eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe-----eeeeeeeeeeceEEEEEecc----CCeEEEeccCC
Q 023822 28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-----CLKTINSKKYGVDLVCFTSH----PTTVIYSSKNG 98 (276)
Q Consensus 28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~~~ 98 (276)
+.-+.|.+.|+|.+|+|+|++|++|+.|.+|++.-.+... .-.++..|.+.|..++|..+ +..+++++.+
T Consensus 83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag- 161 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG- 161 (350)
T ss_pred eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC-
Confidence 3346799999999999999999999999999987665332 23457788999999999754 3456666653
Q ss_pred CCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE----ee-----cCCCeeEe
Q 023822 99 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL----RV-----QGRPAAAY 169 (276)
Q Consensus 99 ~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~-----~~~~~~~~ 169 (276)
|..|++-|...++..+.+.+|.+.|.++ ++-++-++++|++|.+|++||++-..++..+ +. ..+..++.
T Consensus 162 -dc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 162 -DCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred -cceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence 8888888999999999999999999887 3447789999999999999999998888776 22 33568899
Q ss_pred cCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCC--c--EEEEe
Q 023822 170 DDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG--T--LLSTY 244 (276)
Q Consensus 170 ~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~--~~~~~ 244 (276)
.|.|++|+++. |....+||++.++. +..+..|...|.++.|+|...|+++++.|..|++-|++.. + .+...
T Consensus 240 dpsgrll~sg~~dssc~lydirg~r~----iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv 315 (350)
T KOG0641|consen 240 DPSGRLLASGHADSSCMLYDIRGGRM----IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVV 315 (350)
T ss_pred CCCcceeeeccCCCceEEEEeeCCce----eeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEE
Confidence 99999999998 89999999998775 6777889999999999999999999999999999998532 1 12223
Q ss_pred ecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 245 NVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 245 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
. .|+..+..+.|+|..--+++.+.|.++
T Consensus 316 ~---ehkdk~i~~rwh~~d~sfisssadkt~ 343 (350)
T KOG0641|consen 316 A---EHKDKAIQCRWHPQDFSFISSSADKTA 343 (350)
T ss_pred E---eccCceEEEEecCccceeeeccCcceE
Confidence 3 488889999999999999999999875
No 68
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.7e-32 Score=200.06 Aligned_cols=237 Identities=18% Similarity=0.295 Sum_probs=203.6
Q ss_pred cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeee--------eeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI--------NSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (276)
Q Consensus 32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i 103 (276)
+..+-+.|..|+|||++|++|+.||.|.+||..+|+....+ -.+..+|.|+.|+.|...+++|+. ||.|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq---DGkI 287 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ---DGKI 287 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCc---CCcE
Confidence 44567889999999999999999999999999998765543 345678999999999999999998 9999
Q ss_pred EEEEccCCceeeeec-ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee
Q 023822 104 RLLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF 180 (276)
Q Consensus 104 ~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~ 180 (276)
++|.+++|.+++.+. .|...|+++.|+.|+..+++++.|.++++.-++++++++.+ |..-++...|.++|..+++++
T Consensus 288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISAS 367 (508)
T ss_pred EEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEec
Confidence 999999999999986 89999999999999999999999999999999999999999 455578899999997776666
Q ss_pred -CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEE
Q 023822 181 -GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 258 (276)
Q Consensus 181 -d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 258 (276)
||+|++|+.++.++ ...+...+...+|+++..-|.. ..++++...++|.|.++ .|+.++.+.......+...+.+
T Consensus 368 sDgtvkvW~~KtteC--~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTEC--LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred CCccEEEecCcchhh--hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEE
Confidence 99999999998664 2344445566788998888854 67888889999999996 6888888874433566777889
Q ss_pred ECCCCcEEEEecCCCC
Q 023822 259 FSPEGMFVISGRVSPF 274 (276)
Q Consensus 259 ~s~~g~~l~~~~~dg~ 274 (276)
.||.|.+++..++|+.
T Consensus 445 lSpkGewiYcigED~v 460 (508)
T KOG0275|consen 445 LSPKGEWIYCIGEDGV 460 (508)
T ss_pred ecCCCcEEEEEccCcE
Confidence 9999999999999985
No 69
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=202.22 Aligned_cols=242 Identities=18% Similarity=0.308 Sum_probs=208.1
Q ss_pred ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeee-eeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822 25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (276)
Q Consensus 25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i 103 (276)
+....|.-|..+|.|+.|+.|...||+|+.||.|++|.+.+|.+++.+. .|...|+++.|+.|+..+++++. |.++
T Consensus 254 QAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sf---D~tv 330 (508)
T KOG0275|consen 254 QAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASF---DQTV 330 (508)
T ss_pred hhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccc---cceE
Confidence 3344466688999999999999999999999999999999999999997 89999999999999999999998 9999
Q ss_pred EEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee----cCCCeeEecCCC-cEEEE
Q 023822 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV----QGRPAAAYDDQG-LVFAV 178 (276)
Q Consensus 104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~-~~l~~ 178 (276)
++.-+.+|+++..+++|...|+...|.++|..+++++.||+|++|+.++.++..++.. .++..+..-|.+ ..+++
T Consensus 331 RiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iV 410 (508)
T KOG0275|consen 331 RIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIV 410 (508)
T ss_pred EEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEE
Confidence 9999999999999999999999999999999999999999999999999999988833 235566666644 44444
Q ss_pred ee-CCeEEEEecccCCCCCeeeeee-cCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEE
Q 023822 179 AF-GGYIRMFDARKYEKGPFDIFSV-GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE 256 (276)
Q Consensus 179 ~~-d~~i~~~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 256 (276)
+. .+++++.++...- ...+.. ....+...+++.+|.|.++++.++|+.++.|...+|++-..+. .|+..+..
T Consensus 411 CNrsntv~imn~qGQv---VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~---VhEkdvIG 484 (508)
T KOG0275|consen 411 CNRSNTVYIMNMQGQV---VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP---VHEKDVIG 484 (508)
T ss_pred EcCCCeEEEEeccceE---EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee---cccccccc
Confidence 44 8999999987522 111211 1233467788899999999999999999999999999999998 68889999
Q ss_pred EEECCCCcEEEEecCCCCC
Q 023822 257 ASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 257 ~~~s~~g~~l~~~~~dg~v 275 (276)
++-+|..+.||+-++||+.
T Consensus 485 l~HHPHqNllAsYsEDgll 503 (508)
T KOG0275|consen 485 LTHHPHQNLLASYSEDGLL 503 (508)
T ss_pred cccCcccchhhhhcccchh
Confidence 9999999999999999974
No 70
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.9e-31 Score=202.04 Aligned_cols=231 Identities=18% Similarity=0.263 Sum_probs=196.8
Q ss_pred ccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC
Q 023822 31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD 110 (276)
Q Consensus 31 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~ 110 (276)
++|...|.+++.++||++||+|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....+++++. |+.+++|+++.
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~---Drsvkvw~~~~ 275 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASA---DRSVKVWSIDQ 275 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeec---CCceEEEehhH
Confidence 489999999999999999999999999999999999999999999999999999999899999998 99999999999
Q ss_pred CceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEeeCCeEEEEec
Q 023822 111 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAFGGYIRMFDA 189 (276)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~ 189 (276)
...+.++.+|++.|..+....-++.+.+|+.|+++++|++......... +...+.|++|-.+..++.++.+|.|.+|++
T Consensus 276 ~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 276 LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSL 355 (479)
T ss_pred hHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeee
Confidence 9999999999999999999888888888889999999999543322222 444677999999999999998999999999
Q ss_pred ccCCCCCeeeeeecC----------CCCCceEEEECCCCcEEEEeecCCcEEEEECCCC----cEEEEeecCCCCCCceE
Q 023822 190 RKYEKGPFDIFSVGG----------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG----TLLSTYNVKPVSRNSTL 255 (276)
Q Consensus 190 ~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~~~v~ 255 (276)
.+.+ ++....... ++..|++++..|...++|+|+.+|.|++|-+.++ .++..+. ..+-|+
T Consensus 356 ~KKk--plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls----~~GfVN 429 (479)
T KOG0299|consen 356 LKKK--PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS----LVGFVN 429 (479)
T ss_pred cccC--ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc----cccEEE
Confidence 8744 332222211 2237899999999999999999999999999877 3344443 678999
Q ss_pred EEEECCCCcEEEEec
Q 023822 256 EASFSPEGMFVISGR 270 (276)
Q Consensus 256 ~~~~s~~g~~l~~~~ 270 (276)
+++|+++|+++++|-
T Consensus 430 sl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 430 SLAFSNSGKRIVAGI 444 (479)
T ss_pred EEEEccCCCEEEEec
Confidence 999999999777663
No 71
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=4.3e-30 Score=209.56 Aligned_cols=232 Identities=14% Similarity=0.172 Sum_probs=179.4
Q ss_pred CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeee-------------eeeeeeeeceEEEEEec-cCCeEEEeccCCCC
Q 023822 35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-------------KTINSKKYGVDLVCFTS-HPTTVIYSSKNGWD 100 (276)
Q Consensus 35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~d 100 (276)
..|.....++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++..|++++. |
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~---D 97 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASE---D 97 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeC---C
Confidence 44555666677667777777777777775433222 13668899999999999 7889999998 9
Q ss_pred CceEEEEccCC-------ceeeeecccCcceEEEEeccCC-CEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEec
Q 023822 101 ESLRLLSLHDN-------KYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYD 170 (276)
Q Consensus 101 ~~i~~~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~ 170 (276)
+.|++||+.++ +++..+.+|...|.+++|+|++ ++|++++.|++|++||+++++....+ +...+.+++|+
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~s 177 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWN 177 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEE
Confidence 99999999765 3466788999999999999985 69999999999999999999887777 45568899999
Q ss_pred CCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCC-ceEEEECCCCcEEEEee----cCCcEEEEECCCCcE-EEE
Q 023822 171 DQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISD-ANVVKFSNDGRLMLLTT----MEGHIHVLDSFRGTL-LST 243 (276)
Q Consensus 171 ~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~-~~~ 243 (276)
|++.++++++ |+.|++||+++++. ...+..|... ...+.|.+++..+++++ .|+.|++||+++... +..
T Consensus 178 pdG~lLatgs~Dg~IrIwD~rsg~~----v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 178 LDGSLLCTTSKDKKLNIIDPRDGTI----VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred CCCCEEEEecCCCEEEEEECCCCcE----EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence 9999888887 99999999998653 4455566544 45678999887777654 478999999987553 333
Q ss_pred eecCCCCCCceEEEEECCCCcEEEEecC-CCCC
Q 023822 244 YNVKPVSRNSTLEASFSPEGMFVISGRV-SPFS 275 (276)
Q Consensus 244 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~v 275 (276)
... .....+....|++++++|++++. ||.|
T Consensus 254 ~~~--d~~~~~~~~~~d~d~~~L~lggkgDg~I 284 (493)
T PTZ00421 254 VDL--DQSSALFIPFFDEDTNLLYIGSKGEGNI 284 (493)
T ss_pred ecc--CCCCceEEEEEcCCCCEEEEEEeCCCeE
Confidence 321 13345666789999999998874 8765
No 72
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.6e-32 Score=208.12 Aligned_cols=204 Identities=14% Similarity=0.237 Sum_probs=176.9
Q ss_pred ccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccC-CeEEEeccCCCCC
Q 023822 23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGWDE 101 (276)
Q Consensus 23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~d~ 101 (276)
....++++.+|..+|..++|+++|..+++++.|+.+++||+++|+++..+... ..+.++.|+|++ +.+++|+. |+
T Consensus 247 ~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~G~s---d~ 322 (503)
T KOG0282|consen 247 DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD-KVPTCVKFHPDNQNIFLVGGS---DK 322 (503)
T ss_pred CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecC-CCceeeecCCCCCcEEEEecC---CC
Confidence 45677899999999999999999999999999999999999999999988754 368999999999 66777776 99
Q ss_pred ceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE----------------------
Q 023822 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---------------------- 159 (276)
Q Consensus 102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---------------------- 159 (276)
.|+.||+++++.++.+..|-+.|..+.|-++++++++.+.|+++++|+.+.+-.++.+
T Consensus 323 ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~a 402 (503)
T KOG0282|consen 323 KIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAA 402 (503)
T ss_pred cEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehh
Confidence 9999999999999999999999999999999999999999999999998754322211
Q ss_pred ------------------------eecC----CCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCce
Q 023822 160 ------------------------RVQG----RPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDAN 210 (276)
Q Consensus 160 ------------------------~~~~----~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~ 210 (276)
..+. ...+.|+|||.+|++|. ||.+.+||.++-+. +..+..|..++.
T Consensus 403 Qs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl----~~~lkah~~~ci 478 (503)
T KOG0282|consen 403 QSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL----VSKLKAHDQPCI 478 (503)
T ss_pred hccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhh----hhccccCCcceE
Confidence 0000 12578999999999998 99999999998665 666788899999
Q ss_pred EEEECCCC-cEEEEeecCCcEEEEE
Q 023822 211 VVKFSNDG-RLMLLTTMEGHIHVLD 234 (276)
Q Consensus 211 ~~~~~~~~-~~l~~~~~dg~i~i~d 234 (276)
.+.|+|.. ..+|+++.||.|++||
T Consensus 479 ~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 479 GVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEecCCCcceeEecccCceeEecC
Confidence 99999965 6799999999999996
No 73
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.4e-30 Score=188.80 Aligned_cols=230 Identities=19% Similarity=0.270 Sum_probs=178.2
Q ss_pred cCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccC-Ceee-eeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEc
Q 023822 32 DYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTA-ATCL-KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 108 (276)
Q Consensus 32 ~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~ 108 (276)
.-.+.|.+++||| ...+++++|.|++||+|+++. |... +....|.++|.+++|+.++..+++++. |+.+++||+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~---Dk~~k~wDL 101 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGC---DKQAKLWDL 101 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeecc---CCceEEEEc
Confidence 3467899999999 566777999999999999986 3332 334578899999999999999999998 999999999
Q ss_pred cCCceeeeecccCcceEEEEeccCCC--EEEEeeCCCeEEEEeccCceeeeeEeecC-----------------------
Q 023822 109 HDNKYLRYFKGHHDRVVSLSLCSSKD--CFISGSLDRTVLLWDQRAEKCQGLLRVQG----------------------- 163 (276)
Q Consensus 109 ~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------------------- 163 (276)
.+++ +..+..|.++|..+.|-+... .|++|+.|.+|+.||+|...++..+....
T Consensus 102 ~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 102 ASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAV 180 (347)
T ss_pred cCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEE
Confidence 9995 556677999999999987665 89999999999999999877665542211
Q ss_pred --------------------CCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCC---------CCCceEEE
Q 023822 164 --------------------RPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGD---------ISDANVVK 213 (276)
Q Consensus 164 --------------------~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~---------~~~i~~~~ 213 (276)
+++++..++....+.|+ +|.+.+..+..+... ..+.+.-| -..|++|+
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~--~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK--DNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc--CceeEEEeccCCCCCCceEEecceE
Confidence 12444444444444444 777777766653211 12222222 23578899
Q ss_pred ECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEec
Q 023822 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGR 270 (276)
Q Consensus 214 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 270 (276)
|+|....|++++.||+..+||-.....++..+ .+..+|++.+|+.+|.++|.+.
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~---~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE---THPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhhhhccC---cCCCccceeEecCCCCEEEEEe
Confidence 99998899999999999999988888887777 6889999999999999987764
No 74
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=1.4e-29 Score=207.82 Aligned_cols=216 Identities=16% Similarity=0.177 Sum_probs=171.5
Q ss_pred eecCCeEEEEEccCCeeeeeeeeeeeceEEEEEecc-CCeEEEeccCCCCCceEEEEccCCc--------eeeeecccCc
Q 023822 52 ASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLLSLHDNK--------YLRYFKGHHD 122 (276)
Q Consensus 52 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~~~d~~~~~--------~~~~~~~~~~ 122 (276)
|+.++.+++|+......+..+.+|..+|.+++|+|+ +..|++++. |+.|++||+.++. ++..+.+|..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~---DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSE---DLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeC---CCeEEEEECCCCCccccccccceEEeecCCC
Confidence 567889999998887888889999999999999997 788999988 9999999997642 3446788999
Q ss_pred ceEEEEeccCCCE-EEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeee
Q 023822 123 RVVSLSLCSSKDC-FISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDI 199 (276)
Q Consensus 123 ~i~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~ 199 (276)
.|.+++|+|++.. |++++.|++|++||+++++....+ +...+.+++|+|+|.+|++++ |+.|++||+++++. .
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~----i 202 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI----A 202 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE----E
Confidence 9999999998875 578999999999999998876665 445678999999999998877 89999999998654 4
Q ss_pred eeecCCCCCceE-----EEECCCCcEEEEeecCC----cEEEEECCC-CcEEEEeecCCCCCCceEEEEECCCCcEEEEe
Q 023822 200 FSVGGDISDANV-----VKFSNDGRLMLLTTMEG----HIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 269 (276)
Q Consensus 200 ~~~~~~~~~i~~-----~~~~~~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 269 (276)
..+.+|...+.. ..|++++.+|++++.|+ .|+|||+++ ++++..+... .+.+.+......++|.++++|
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld-~~~~~L~p~~D~~tg~l~lsG 281 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID-NASAPLIPHYDESTGLIYLIG 281 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec-CCccceEEeeeCCCCCEEEEE
Confidence 556677665433 33568889999987764 799999985 5566555422 233444444446678999999
Q ss_pred cCCCCC
Q 023822 270 RVSPFS 275 (276)
Q Consensus 270 ~~dg~v 275 (276)
+.|+++
T Consensus 282 kGD~tI 287 (568)
T PTZ00420 282 KGDGNC 287 (568)
T ss_pred ECCCeE
Confidence 999875
No 75
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=2.1e-30 Score=196.25 Aligned_cols=242 Identities=16% Similarity=0.265 Sum_probs=207.3
Q ss_pred cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (276)
Q Consensus 24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i 103 (276)
-+....++||...|+.+.|+|+...+++++.|..|+||.............|..+|+.+..+|.+.||++++. |+..
T Consensus 251 ~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~---d~~w 327 (506)
T KOG0289|consen 251 NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASN---DGTW 327 (506)
T ss_pred hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecC---CceE
Confidence 3456788999999999999999999999999999999999988888889999999999999999999999998 9999
Q ss_pred EEEEccCCceeeeecc--cCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEe
Q 023822 104 RLLSLHDNKYLRYFKG--HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVA 179 (276)
Q Consensus 104 ~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~ 179 (276)
.+.|++++..+..... ..-.+++.+|+|||.+|.+|..|+.|++||+.++.....| |..++..++|+.+|.+|+++
T Consensus 328 ~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ 407 (506)
T KOG0289|consen 328 AFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATA 407 (506)
T ss_pred EEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEE
Confidence 9999999988766543 2235899999999999999999999999999999888777 67778899999999999999
Q ss_pred e-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC--CCcEEEEeecCCCCCCceEE
Q 023822 180 F-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF--RGTLLSTYNVKPVSRNSTLE 256 (276)
Q Consensus 180 ~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~v~~ 256 (276)
. |+.|++||+|..+. +..+.+... .++.++.|.+.|.+|+.++.|=.|++++-. +..++..+. .|.+..+.
T Consensus 408 add~~V~lwDLRKl~n--~kt~~l~~~-~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~---~~sg~st~ 481 (506)
T KOG0289|consen 408 ADDGSVKLWDLRKLKN--FKTIQLDEK-KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA---DHSGLSTG 481 (506)
T ss_pred ecCCeEEEEEehhhcc--cceeecccc-ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh---hcccccce
Confidence 8 68899999998653 334444333 379999999999999999887677777633 445555555 57788999
Q ss_pred EEECCCCcEEEEecCCCC
Q 023822 257 ASFSPEGMFVISGRVSPF 274 (276)
Q Consensus 257 ~~~s~~g~~l~~~~~dg~ 274 (276)
+.|....++++++|.|..
T Consensus 482 v~Fg~~aq~l~s~smd~~ 499 (506)
T KOG0289|consen 482 VRFGEHAQYLASTSMDAI 499 (506)
T ss_pred eeecccceEEeeccchhh
Confidence 999999999999998854
No 76
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.2e-31 Score=212.07 Aligned_cols=227 Identities=22% Similarity=0.363 Sum_probs=197.6
Q ss_pred EEEEc-CCCCEEEEeecCCeEEEEEccCCe------eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC
Q 023822 39 SMDFH-KSSSYLVTASDDESIRLYDVTAAT------CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN 111 (276)
Q Consensus 39 ~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~ 111 (276)
.+..+ |.+++|++|+.||.|++|+...-. ....++.|...|..+....+++.+++++. |-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~Ss---DtTVK~W~~~~~ 105 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASS---DTTVKVWNAHKD 105 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecC---CceEEEeecccC
Confidence 44444 367789999999999999986322 36778899999999999999999999998 999999999877
Q ss_pred --ceeeeecccCcceEEEEe-ccCCCEEEEeeCCCeEEEEeccCcee--eeeE-----------eecCCCeeEecCCCcE
Q 023822 112 --KYLRYFKGHHDRVVSLSL-CSSKDCFISGSLDRTVLLWDQRAEKC--QGLL-----------RVQGRPAAAYDDQGLV 175 (276)
Q Consensus 112 --~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~-----------~~~~~~~~~~~~~~~~ 175 (276)
-+..++..|.+.|.|+++ .++..++|+|+-|+.|.+||+.++.. +..+ +...+.+++.++.+.+
T Consensus 106 ~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 106 NTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred cchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 567788999999999999 77888999999999999999997732 2222 2334668899999988
Q ss_pred EEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCce
Q 023822 176 FAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST 254 (276)
Q Consensus 176 l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 254 (276)
++.|+ ++.+++||.++.++ +..+.+|...|..+..++||..++++|.||+|++||+...+++.++. .|...|
T Consensus 186 ivsGgtek~lr~wDprt~~k----imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~---vH~e~V 258 (735)
T KOG0308|consen 186 IVSGGTEKDLRLWDPRTCKK----IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI---VHKEGV 258 (735)
T ss_pred EEecCcccceEEeccccccc----eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE---eccCce
Confidence 88887 89999999999776 77778999999999999999999999999999999999999999998 688889
Q ss_pred EEEEECCCCcEEEEecCCCCC
Q 023822 255 LEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 255 ~~~~~s~~g~~l~~~~~dg~v 275 (276)
+++.-+|+=.++++|+.||.|
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i 279 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNI 279 (735)
T ss_pred EEEeeCCCcceEEecCCCCcE
Confidence 999999999999999999975
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.98 E-value=2.8e-30 Score=211.11 Aligned_cols=232 Identities=19% Similarity=0.325 Sum_probs=198.0
Q ss_pred ceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822 27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 106 (276)
Q Consensus 27 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~ 106 (276)
...+.||.+.|.++++..-+.+|++|+.|.++++||..+|++...+.+|...+.++.. ....+++|+. |.+|++|
T Consensus 242 ~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~---D~tVkVW 316 (537)
T KOG0274|consen 242 LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSR---DNTVKVW 316 (537)
T ss_pred EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccC---CceEEEE
Confidence 3348999999999999887889999999999999999999999999999999998887 4556677676 9999999
Q ss_pred EccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEeeCCeE
Q 023822 107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAFGGYI 184 (276)
Q Consensus 107 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~d~~i 184 (276)
++.++..+..+.+|.++|.++..+ +.++++|+.|++|++||+.++++++.+ |...+.++.+.+...++.++.|+.|
T Consensus 317 ~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~I 394 (537)
T KOG0274|consen 317 DVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTI 394 (537)
T ss_pred eccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccce
Confidence 999999999999999999999996 789999999999999999999999999 5555667777666555555559999
Q ss_pred EEEecccC-CCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCC
Q 023822 185 RMFDARKY-EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 263 (276)
Q Consensus 185 ~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 263 (276)
++||+++. +. +..+.+|..-+..+.+ .+++|++++.|+.|++||..++++++.+... +.+.|..+++. .
T Consensus 395 kvWdl~~~~~c----~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~--~~~~v~~l~~~--~ 464 (537)
T KOG0274|consen 395 KVWDLRTKRKC----IHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR--HVGGVSALALG--K 464 (537)
T ss_pred EeecCCchhhh----hhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccC--CcccEEEeecC--c
Confidence 99999987 44 6667778777766554 5678999999999999999999999999831 56888888876 3
Q ss_pred cEEEEecCCCCC
Q 023822 264 MFVISGRVSPFS 275 (276)
Q Consensus 264 ~~l~~~~~dg~v 275 (276)
..+++++.||.+
T Consensus 465 ~~il~s~~~~~~ 476 (537)
T KOG0274|consen 465 EEILCSSDDGSV 476 (537)
T ss_pred ceEEEEecCCee
Confidence 567788888764
No 78
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=4.5e-30 Score=185.97 Aligned_cols=203 Identities=18% Similarity=0.334 Sum_probs=164.5
Q ss_pred ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEE----------------------
Q 023822 25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLV---------------------- 82 (276)
Q Consensus 25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~---------------------- 82 (276)
+....+++|.++|..+.|.+|++.+++++.|.+++.||+++|+.++.++.|..-|..+
T Consensus 81 eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~ 160 (338)
T KOG0265|consen 81 ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLW 160 (338)
T ss_pred cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEE
Confidence 3345677999999999999999999999999999999999999888777665544444
Q ss_pred --------------------EEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCC
Q 023822 83 --------------------CFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD 142 (276)
Q Consensus 83 --------------------~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 142 (276)
.|...+..+.+|+- |+.|++||++.+.....+.+|.++|+.+..+|+|.++.+-+.|
T Consensus 161 D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggI---dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd 237 (338)
T KOG0265|consen 161 DIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGI---DNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMD 237 (338)
T ss_pred eecccchhhccccceeEEEEEecccccceeeccc---cCceeeeccccCcceEEeecccCceeeEEeccCCCcccccccc
Confidence 44444444444444 5555555555566667788999999999999999999999999
Q ss_pred CeEEEEeccCc----eeeeeEeec------CCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceE
Q 023822 143 RTVLLWDQRAE----KCQGLLRVQ------GRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANV 211 (276)
Q Consensus 143 ~~i~iwd~~~~----~~~~~~~~~------~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~ 211 (276)
.++++||++.. +++..+..+ ..-.++|+|++..+.+++ |+.+++||...... ++.+++|...|++
T Consensus 238 ~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~----lyklpGh~gsvn~ 313 (338)
T KOG0265|consen 238 NTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRI----LYKLPGHYGSVNE 313 (338)
T ss_pred ceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccE----EEEcCCcceeEEE
Confidence 99999999853 345555222 123689999999998888 99999999987655 8889999999999
Q ss_pred EEECCCCcEEEEeecCCcEEEEE
Q 023822 212 VKFSNDGRLMLLTTMEGHIHVLD 234 (276)
Q Consensus 212 ~~~~~~~~~l~~~~~dg~i~i~d 234 (276)
++|+|...+|.+++.|.+|++=+
T Consensus 314 ~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 314 VDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred eeecCCCcEEEEeccCceeEeec
Confidence 99999999999999999988743
No 79
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.8e-30 Score=186.74 Aligned_cols=207 Identities=21% Similarity=0.290 Sum_probs=162.3
Q ss_pred ceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCee--eeee--eeeeeceEEEEEeccCCeEEEeccCCCCCc
Q 023822 27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC--LKTI--NSKKYGVDLVCFTSHPTTVIYSSKNGWDES 102 (276)
Q Consensus 27 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~ 102 (276)
...|++|.+.|++++|+.||++||+++.|++|++|++..... .+.+ ...-+..+.+.|.||-+.+++.... ...
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~--g~~ 156 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKR--GNK 156 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEcc--CCE
Confidence 345789999999999999999999999999999999975321 1111 1112356789999999888877763 678
Q ss_pred eEEEEccCCc---eee---------eecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe--ecCCCeeE
Q 023822 103 LRLLSLHDNK---YLR---------YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--VQGRPAAA 168 (276)
Q Consensus 103 i~~~d~~~~~---~~~---------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~ 168 (276)
+++|.+...+ ... .-+.|.-.+..+-....+.++++++.|..|.+|+++ ++.+..+. .......+
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence 9999865322 111 113456677777777888999999999999999999 77777773 33456789
Q ss_pred ecCCCcEEEEee-CCeEEEEecccCCCC----CeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC
Q 023822 169 YDDQGLVFAVAF-GGYIRMFDARKYEKG----PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF 236 (276)
Q Consensus 169 ~~~~~~~l~~~~-d~~i~~~d~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 236 (276)
.+|+|++++++. ...+++|.+--.+.. ....+.+.+|...|..++|+|+...+++.+.||++++||+.
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 999999998887 888999997554432 23467889999999999999999999999999999999963
No 80
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.8e-29 Score=187.19 Aligned_cols=204 Identities=12% Similarity=0.228 Sum_probs=173.5
Q ss_pred cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822 26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 105 (276)
Q Consensus 26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~ 105 (276)
....+.+|+..|+|+.|+.+|.+||||..+|.|+||...++.....+...-..+.-+.|+|.+..|+.|+. ||.+..
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~---DGsvWm 174 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST---DGSVWM 174 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecC---CCcEEE
Confidence 45678899999999999999999999999999999999999988888766677899999999999999998 999999
Q ss_pred EEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe-------------------------
Q 023822 106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR------------------------- 160 (276)
Q Consensus 106 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------------------------- 160 (276)
|.+.++...+.+.+|+.++++=.|.|+|+.++++..||+|++||+.+++++..+.
T Consensus 175 w~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e 254 (399)
T KOG0296|consen 175 WQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSE 254 (399)
T ss_pred EECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCC
Confidence 9999988889999999999999999999999999999999999998876544431
Q ss_pred ------------------------------------------------------------------------ecCCCeeE
Q 023822 161 ------------------------------------------------------------------------VQGRPAAA 168 (276)
Q Consensus 161 ------------------------------------------------------------------------~~~~~~~~ 168 (276)
..++..+.
T Consensus 255 ~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~ 334 (399)
T KOG0296|consen 255 GVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLK 334 (399)
T ss_pred ccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEE
Confidence 01111223
Q ss_pred ecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC
Q 023822 169 YDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF 236 (276)
Q Consensus 169 ~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 236 (276)
|.++..+++++.+|.|+.||.|+++. .+...+|...|.+++++|++++++++|.|+..+||+..
T Consensus 335 w~~t~~l~t~c~~g~v~~wDaRtG~l----~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 335 WLNTDYLLTACANGKVRQWDARTGQL----KFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EcCcchheeeccCceEEeeeccccce----EEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 33433444555577888888877765 77888999999999999999999999999999999864
No 81
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=1.3e-29 Score=184.24 Aligned_cols=228 Identities=22% Similarity=0.288 Sum_probs=179.6
Q ss_pred CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCce
Q 023822 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY 113 (276)
Q Consensus 34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~ 113 (276)
...|.++.|+|.++.|++++.||++++||.........+ .|..++.+++|.+ ...+++++. ||.|+.+|+++++.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~---dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGL---DGQVRRYDLNTGNE 87 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEecc---CceEEEEEecCCcc
Confidence 567999999999999999999999999999877554444 4678999999986 567778877 99999999998875
Q ss_pred eeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEE-eeCCeEEEEecccC
Q 023822 114 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV-AFGGYIRMFDARKY 192 (276)
Q Consensus 114 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~d~~i~~~d~~~~ 192 (276)
. .+..|..+|.++.+++....+++|+.|++|++||.+.......+.... ..-+.+-.+..|++ +.+..+.+||+++.
T Consensus 88 ~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 88 D-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDVSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred e-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc-eEEEEeccCCEEEEeecCceEEEEEcccc
Confidence 4 455699999999999988899999999999999999755555553222 23334444444444 55888999998875
Q ss_pred CCCC--------------------------------------------eeeeeecCC---------CCCceEEEECCCCc
Q 023822 193 EKGP--------------------------------------------FDIFSVGGD---------ISDANVVKFSNDGR 219 (276)
Q Consensus 193 ~~~~--------------------------------------------~~~~~~~~~---------~~~i~~~~~~~~~~ 219 (276)
.... ...+.+..| ..+|++++|+|-..
T Consensus 166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~ 245 (323)
T KOG1036|consen 166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG 245 (323)
T ss_pred cchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence 4211 001111112 13789999999988
Q ss_pred EEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRV 271 (276)
Q Consensus 220 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 271 (276)
.|++|+.||.|.+||+.+.+.+..+. ..+..|.+++|+.||..||.++.
T Consensus 246 tfaTgGsDG~V~~Wd~~~rKrl~q~~---~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRKRLKQLA---KYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEecCCCceEEEccCcchhhhhhcc---CCCCceEEEEeccCCCeEEEEec
Confidence 99999999999999999999999888 56788999999999999999874
No 82
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.5e-29 Score=180.66 Aligned_cols=211 Identities=18% Similarity=0.199 Sum_probs=179.1
Q ss_pred ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccC--CCCCc
Q 023822 25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN--GWDES 102 (276)
Q Consensus 25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--~~d~~ 102 (276)
+.+-++.||++.|+|++.+.+.+.|++|+.|.++++||+++|+++..++.. .+|..+.|++++++++..... +..+.
T Consensus 43 erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~-~~Vk~~~F~~~gn~~l~~tD~~mg~~~~ 121 (327)
T KOG0643|consen 43 ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN-SPVKRVDFSFGGNLILASTDKQMGYTCF 121 (327)
T ss_pred ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC-CeeEEEeeccCCcEEEEEehhhcCcceE
Confidence 445778999999999999999999999999999999999999999998764 489999999999998887653 34678
Q ss_pred eEEEEcc-------CCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCC
Q 023822 103 LRLLSLH-------DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQ 172 (276)
Q Consensus 103 i~~~d~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~ 172 (276)
|.++|++ ..++...+..+.+.++.+-|.|-++.|++|..||.|..||+++++....- |...++.+.++++
T Consensus 122 v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d 201 (327)
T KOG0643|consen 122 VSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRD 201 (327)
T ss_pred EEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCC
Confidence 9999998 44567778888899999999999999999999999999999997554333 7778999999999
Q ss_pred CcEEEEee-CCeEEEEecccCCCCC---------------------------------------------------eeee
Q 023822 173 GLVFAVAF-GGYIRMFDARKYEKGP---------------------------------------------------FDIF 200 (276)
Q Consensus 173 ~~~l~~~~-d~~i~~~d~~~~~~~~---------------------------------------------------~~~~ 200 (276)
..++++++ |.+-++||.++.+... ..+-
T Consensus 202 ~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEig 281 (327)
T KOG0643|consen 202 RTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIG 281 (327)
T ss_pred cceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhc
Confidence 99998888 9999999988743110 0012
Q ss_pred eecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC
Q 023822 201 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF 236 (276)
Q Consensus 201 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 236 (276)
...+|-++|++++|+|+|+..++|++||.|++....
T Consensus 282 rvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 282 RVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred cccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 344588999999999999999999999999998654
No 83
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=7.6e-30 Score=194.70 Aligned_cols=224 Identities=19% Similarity=0.248 Sum_probs=195.2
Q ss_pred CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEcc----
Q 023822 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH---- 109 (276)
Q Consensus 34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~---- 109 (276)
.++|.|++-+|+|.+|+.|+..|.+++|.+.+|..+..+..|-..|+++.|+.|+.++++++. ||.|.+|.+.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk---Dg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSK---DGAVLVWLLTDLVS 157 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCC---CccEEEEEEEeecc
Confidence 578999999999999999989999999999999999999999999999999999999999999 9999999864
Q ss_pred -----CCceeeeecccCcceEEEEeccCC--CEEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-
Q 023822 110 -----DNKYLRYFKGHHDRVVSLSLCSSK--DCFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF- 180 (276)
Q Consensus 110 -----~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~- 180 (276)
+-++...+..|.-+|+++...+.+ .++++++.|.++++||+..+..+..+ ....+.+++++|.++.+.+|.
T Consensus 158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~ 237 (476)
T KOG0646|consen 158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTE 237 (476)
T ss_pred cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCC
Confidence 236778899999999999987653 48999999999999999999988887 556688999999998888887
Q ss_pred CCeEEEEecccCC------------CCCeeeeeecCCCC--CceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeec
Q 023822 181 GGYIRMFDARKYE------------KGPFDIFSVGGDIS--DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV 246 (276)
Q Consensus 181 d~~i~~~d~~~~~------------~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 246 (276)
+|.|.+.++.... ........+.+|.. +|+|++++-||.+|++|+.||.|+|||+.+.++++++.
T Consensus 238 ~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~- 316 (476)
T KOG0646|consen 238 EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ- 316 (476)
T ss_pred cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh-
Confidence 8999998876543 11223445566776 99999999999999999999999999999999999887
Q ss_pred CCCCCCceEEEEECCCC
Q 023822 247 KPVSRNSTLEASFSPEG 263 (276)
Q Consensus 247 ~~~~~~~v~~~~~s~~g 263 (276)
...++|+.+.+.|-.
T Consensus 317 --~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 317 --TSKGPVTNLQINPLE 331 (476)
T ss_pred --hhccccceeEeeccc
Confidence 467899999986643
No 84
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.2e-29 Score=203.92 Aligned_cols=239 Identities=14% Similarity=0.167 Sum_probs=211.0
Q ss_pred cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (276)
Q Consensus 24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i 103 (276)
++.++++.. +-+.+..|-|.++++++|...|.+.+||+.+...+.+++.|.+.++.++.+|+++.+++++. |.+|
T Consensus 404 ~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~sa---DktV 478 (888)
T KOG0306|consen 404 LKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSA---DKTV 478 (888)
T ss_pred cceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecC---CcEE
Confidence 455555543 47889999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEccC-----Cce--e------eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeE
Q 023822 104 RLLSLHD-----NKY--L------RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAA 168 (276)
Q Consensus 104 ~~~d~~~-----~~~--~------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~ 168 (276)
++||..- +.. + +++ .-.+.|.|+.++||+++|+++--|.++++|-+++.+....+ |.-++.++.
T Consensus 479 kfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smD 557 (888)
T KOG0306|consen 479 KFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMD 557 (888)
T ss_pred EEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEe
Confidence 9999642 111 1 112 24568999999999999999999999999999998887777 556778999
Q ss_pred ecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC
Q 023822 169 YDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK 247 (276)
Q Consensus 169 ~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 247 (276)
++|+++++++|+ |.+|++|-+.-+.+ -..+.+|...|.++.|-|....+++++.|+.|+-||....+.++.+.
T Consensus 558 IS~DSklivTgSADKnVKiWGLdFGDC----HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-- 631 (888)
T KOG0306|consen 558 ISPDSKLIVTGSADKNVKIWGLDFGDC----HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-- 631 (888)
T ss_pred ccCCcCeEEeccCCCceEEeccccchh----hhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec--
Confidence 999999999998 99999999998887 55667899999999999999999999999999999999999999998
Q ss_pred CCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 248 PVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 248 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
+|...|++++.+|+|.+++++|.|..+
T Consensus 632 -~H~~ev~cLav~~~G~~vvs~shD~sI 658 (888)
T KOG0306|consen 632 -GHHSEVWCLAVSPNGSFVVSSSHDKSI 658 (888)
T ss_pred -cchheeeeeEEcCCCCeEEeccCCcee
Confidence 899999999999999999999998653
No 85
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=8.4e-30 Score=196.96 Aligned_cols=264 Identities=15% Similarity=0.241 Sum_probs=198.8
Q ss_pred cccCcccceeeeeehHHHhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeee-----------
Q 023822 3 GSQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT----------- 71 (276)
Q Consensus 3 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----------- 71 (276)
|+++.....+.+.--+..++.++.+.--. ...|++++|++.|..|++.+.....+|+|-...+....
T Consensus 185 Gs~Dy~v~~wDf~gMdas~~~fr~l~P~E--~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~ 262 (641)
T KOG0772|consen 185 GSLDYTVKFWDFQGMDASMRSFRQLQPCE--THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMY 262 (641)
T ss_pred ccccceEEEEecccccccchhhhccCccc--ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhh
Confidence 55555555554444444444444333333 34789999999999998888888999999654333222
Q ss_pred -eeeeeeceEEEEEeccCC-eEEEeccCCCCCceEEEEccCCce-eeeec-----ccCcceEEEEeccCCCEEEEeeCCC
Q 023822 72 -INSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDNKY-LRYFK-----GHHDRVVSLSLCSSKDCFISGSLDR 143 (276)
Q Consensus 72 -~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~~~d~~~~~~-~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~d~ 143 (276)
.++|...+++-+|+|..+ .+++++. ||++++||++..+. .+.++ +..-+++.++|++++++||+|+.||
T Consensus 263 nTKGHia~lt~g~whP~~k~~FlT~s~---DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG 339 (641)
T KOG0772|consen 263 NTKGHIAELTCGCWHPDNKEEFLTCSY---DGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG 339 (641)
T ss_pred ccCCceeeeeccccccCcccceEEecC---CCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC
Confidence 257888999999999765 5677777 99999999976643 33332 2334689999999999999999999
Q ss_pred eEEEEeccCceeeeeE-----eec--CCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEEC
Q 023822 144 TVLLWDQRAEKCQGLL-----RVQ--GRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS 215 (276)
Q Consensus 144 ~i~iwd~~~~~~~~~~-----~~~--~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 215 (276)
+|.+|+.++......+ |.. .+.++.|+++|++|++-+ |+++++||+++.+.. +....--....+-+.++||
T Consensus 340 SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp-L~~~tgL~t~~~~tdc~FS 418 (641)
T KOG0772|consen 340 SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP-LNVRTGLPTPFPGTDCCFS 418 (641)
T ss_pred ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc-hhhhcCCCccCCCCccccC
Confidence 9999998655332222 444 688999999999888877 999999999998753 2222222234567789999
Q ss_pred CCCcEEEEeec------CCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 216 NDGRLMLLTTM------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 216 ~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
|+.++|++|.. .|.+.+||..+...++.+. -....|..+.|+|.-+.|.+|+.||+.
T Consensus 419 Pd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~---i~~aSvv~~~WhpkLNQi~~gsgdG~~ 481 (641)
T KOG0772|consen 419 PDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID---ISTASVVRCLWHPKLNQIFAGSGDGTA 481 (641)
T ss_pred CCceEEEecccccCCCCCceEEEEeccceeeEEEec---CCCceEEEEeecchhhheeeecCCCce
Confidence 99999999863 4689999999999999887 467889999999999999999999974
No 86
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=3.1e-30 Score=182.60 Aligned_cols=201 Identities=19% Similarity=0.294 Sum_probs=176.3
Q ss_pred cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe-eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC
Q 023822 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD 110 (276)
Q Consensus 32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~ 110 (276)
.|..-|.+++|+.|.++|++|+.+..+||||++..+ +..++.+|.+.|..+.|....+.+++++. |+.|++||.++
T Consensus 98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSad---d~tVRLWD~rT 174 (334)
T KOG0278|consen 98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSAD---DKTVRLWDHRT 174 (334)
T ss_pred hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeecc---CCceEEEEecc
Confidence 478889999999999999999999999999998654 56778899999999999999999999877 99999999999
Q ss_pred CceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe-ecCCCeeEecCCCcEEEEee-CCeEEEEe
Q 023822 111 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFAVAF-GGYIRMFD 188 (276)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-d~~i~~~d 188 (276)
++.++++. .+.+|+++.++++|++|.++ ..+.|.+||..+...++.+. ...+.+..++|+..+++++. |..++.||
T Consensus 175 gt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfD 252 (334)
T KOG0278|consen 175 GTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFD 252 (334)
T ss_pred CcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEe
Confidence 99999987 67789999999999866655 46789999999998888874 44577899999988887777 89999999
Q ss_pred cccCCCCCeeeee-ecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEE
Q 023822 189 ARKYEKGPFDIFS-VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL 241 (276)
Q Consensus 189 ~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 241 (276)
..+++. +-. ..+|.++|.|+.|+|+|...++||+||+|++|.+..++..
T Consensus 253 y~TgeE----i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 253 YNTGEE----IGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ccCCce----eeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 999875 333 4789999999999999999999999999999998766554
No 87
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2e-29 Score=192.07 Aligned_cols=240 Identities=16% Similarity=0.163 Sum_probs=203.6
Q ss_pred ceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeee----e-------------e-eeeeeceEEEEEeccC
Q 023822 27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK----T-------------I-NSKKYGVDLVCFTSHP 88 (276)
Q Consensus 27 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~----~-------------~-~~~~~~v~~~~~~~~~ 88 (276)
...+..|.-+|.|++++|++++.++++.|++|.-|++.+++... . - +.|...+.+++.++++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 45677899999999999999999999999999999998776331 0 0 2566789999999999
Q ss_pred CeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCe
Q 023822 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPA 166 (276)
Q Consensus 89 ~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~ 166 (276)
++|++++. |..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|++|++|++.....+.++ |...+..
T Consensus 215 kylatgg~---d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~ 291 (479)
T KOG0299|consen 215 KYLATGGR---DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLG 291 (479)
T ss_pred cEEEecCC---CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceee
Confidence 99999998 999999999999999999999999999999988889999999999999999998888877 5556667
Q ss_pred eEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822 167 AAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN 245 (276)
Q Consensus 167 ~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 245 (276)
+....-++.++++. |+++++|++.... ...+.++...+-|++|-.+. .+++|+.+|.|.+|++...+++....
T Consensus 292 IdaL~reR~vtVGgrDrT~rlwKi~ees-----qlifrg~~~sidcv~~In~~-HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 292 IDALSRERCVTVGGRDRTVRLWKIPEES-----QLIFRGGEGSIDCVAFINDE-HFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred echhcccceEEeccccceeEEEeccccc-----eeeeeCCCCCeeeEEEeccc-ceeeccCCceEEEeeecccCceeEee
Confidence 77777888888886 9999999994322 33344667789999998764 58999999999999999999988776
Q ss_pred cCCC---------CCCceEEEEECCCCcEEEEecCCCCC
Q 023822 246 VKPV---------SRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 246 ~~~~---------~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
...+ +...|++++..|...++|+|+.+|.|
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~v 404 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCV 404 (479)
T ss_pred ccccccCCccccccccceeeeEecccCceEEecCCCCce
Confidence 4221 11279999999999999999999976
No 88
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=9.6e-31 Score=196.82 Aligned_cols=239 Identities=22% Similarity=0.320 Sum_probs=202.6
Q ss_pred ceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe--eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822 27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104 (276)
Q Consensus 27 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~ 104 (276)
...+..|.+.|..+.|-++...|++|+.|..|++|+....+ .+.++.+..++++.+.|.++++++++++. |+.++
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~---d~~~r 244 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASN---DKNLR 244 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecC---CCcee
Confidence 34567899999999999998999999999999999987666 66777788889999999999999999998 99999
Q ss_pred EEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-CC
Q 023822 105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-GG 182 (276)
Q Consensus 105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d~ 182 (276)
+|++...+...++.+|.+.|+++.|......+++|+.|.+|++||+....+.+++ .......+..+ ...++++. |+
T Consensus 245 ~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~Dk 322 (459)
T KOG0288|consen 245 LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDK 322 (459)
T ss_pred eeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeeccccc
Confidence 9999999999999999999999999877777999999999999999999888877 44444445554 33444444 99
Q ss_pred eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCC-CCCCceEEEEECC
Q 023822 183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-VSRNSTLEASFSP 261 (276)
Q Consensus 183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~s~ 261 (276)
.|++||.+.... ....+.+. .|+++..+++|..|.+++.|..+.+.|+++.+....+.... ......+.+.|||
T Consensus 323 kvRfwD~Rs~~~----~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 323 KVRFWDIRSADK----TRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP 397 (459)
T ss_pred ceEEEeccCCce----eeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC
Confidence 999999998665 45554443 89999999999999999999999999999998888775211 1234588999999
Q ss_pred CCcEEEEecCCCCC
Q 023822 262 EGMFVISGRVSPFS 275 (276)
Q Consensus 262 ~g~~l~~~~~dg~v 275 (276)
++.|+++||.||-|
T Consensus 398 d~~YvaAGS~dgsv 411 (459)
T KOG0288|consen 398 DGSYVAAGSADGSV 411 (459)
T ss_pred CCceeeeccCCCcE
Confidence 99999999999975
No 89
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.7e-28 Score=176.78 Aligned_cols=237 Identities=16% Similarity=0.162 Sum_probs=193.6
Q ss_pred cccceeeccCCCcEEEEEEcCCCCEEEEeec--CCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASD--DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101 (276)
Q Consensus 24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~ 101 (276)
.+..+++..+.-.|..++|....+.++.++. |.+|+.-++.+.+.++.+.+|...|..++.+|-+..+++++. |+
T Consensus 46 g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~---D~ 122 (311)
T KOG1446|consen 46 GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSL---DK 122 (311)
T ss_pred CceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEeccc---CC
Confidence 3455666667778899999877777777765 889999999999999999999999999999999999999998 99
Q ss_pred ceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc--eeeeeE--e---ecCCCeeEecCCCc
Q 023822 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE--KCQGLL--R---VQGRPAAAYDDQGL 174 (276)
Q Consensus 102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~--~---~~~~~~~~~~~~~~ 174 (276)
+|++||++..++...+..... ..++|.|+|-++|++.....|++||+|.. .+...+ . ......+.|+|+|+
T Consensus 123 tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK 200 (311)
T KOG1446|consen 123 TVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK 200 (311)
T ss_pred eEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC
Confidence 999999998887766653333 35789999999999998889999999965 233333 2 33456899999999
Q ss_pred EEEEee-CCeEEEEecccCCCCCeeeeeecCCCC---CceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCC
Q 023822 175 VFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDIS---DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS 250 (276)
Q Consensus 175 ~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 250 (276)
.+..++ .+.+++.|.-.+.. ...+..+.. -....+|+||++++++|+.||+|.+|++++++.+..+... +
T Consensus 201 ~iLlsT~~s~~~~lDAf~G~~----~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~--~ 274 (311)
T KOG1446|consen 201 SILLSTNASFIYLLDAFDGTV----KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP--N 274 (311)
T ss_pred EEEEEeCCCcEEEEEccCCcE----eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC--C
Confidence 988888 68899999877663 222222222 2257889999999999999999999999999999999832 6
Q ss_pred CCceEEEEECCCCcEEEEecC
Q 023822 251 RNSTLEASFSPEGMFVISGRV 271 (276)
Q Consensus 251 ~~~v~~~~~s~~g~~l~~~~~ 271 (276)
.+++.++.|+|.-.++++++.
T Consensus 275 ~~~~~~~~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 275 GGPVSCVRFNPRYAMFVSASS 295 (311)
T ss_pred CCCccccccCCceeeeeecCc
Confidence 789999999999888888875
No 90
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=2.4e-29 Score=187.47 Aligned_cols=230 Identities=20% Similarity=0.293 Sum_probs=188.5
Q ss_pred cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCe---EEEeccCCCCCceEEEEc
Q 023822 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT---VIYSSKNGWDESLRLLSL 108 (276)
Q Consensus 32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~---l~~~~~~~~d~~i~~~d~ 108 (276)
-|.+.|.++... +..+++|+.||.+++||. .|+....+.+|.+++..++|.-.+.. +++++. |.++++|.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~---Dqtl~Lw~~ 176 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASM---DQTLRLWKW 176 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecC---CceEEEEEe
Confidence 377888888777 679999999999999996 68999999999999998888765544 899988 999999999
Q ss_pred cCCcee----eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc-------------------------eeeeeE
Q 023822 109 HDNKYL----RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE-------------------------KCQGLL 159 (276)
Q Consensus 109 ~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-------------------------~~~~~~ 159 (276)
+.++.. ..-.+|...|.++...+++..+++|+.|.+|.+|+..+. .++..+
T Consensus 177 ~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 177 NVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL 256 (423)
T ss_pred cCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence 877532 333599999999999999999999999999999993210 112222
Q ss_pred --eecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCC
Q 023822 160 --RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR 237 (276)
Q Consensus 160 --~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 237 (276)
|..++..+.|++.+..+.++.|.+|+.||+.++.. ...+ .....++++..+|..++|++|+.|..+++||.++
T Consensus 257 ~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~----~~~~-~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGL----KSTL-TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred cccccceeeEEEcCCCceEeecccceEEEEEeecccc----eeee-ecCcceeEeecccccceeeecCCCCceeecCCCC
Confidence 55667789999977777788899999999998775 2222 2345799999999999999999999999999887
Q ss_pred CcE---EEEeecCCCCCCceEEEEECCCC-cEEEEecCCCCC
Q 023822 238 GTL---LSTYNVKPVSRNSTLEASFSPEG-MFVISGRVSPFS 275 (276)
Q Consensus 238 ~~~---~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v 275 (276)
+.- .+++. +|.+.|.++.|+|.. ..|++|+.|+++
T Consensus 332 ~~gs~v~~s~~---gH~nwVssvkwsp~~~~~~~S~S~D~t~ 370 (423)
T KOG0313|consen 332 GDGSVVSQSLI---GHKNWVSSVKWSPTNEFQLVSGSYDNTV 370 (423)
T ss_pred CCCceeEEeee---cchhhhhheecCCCCceEEEEEecCCeE
Confidence 643 34455 799999999999976 568999999985
No 91
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=5.5e-31 Score=210.71 Aligned_cols=236 Identities=17% Similarity=0.285 Sum_probs=214.0
Q ss_pred eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEE
Q 023822 28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 107 (276)
Q Consensus 28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d 107 (276)
+.+-.|...|.|+..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|++....++.+.. +|.|++||
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaagsa---sgtiK~wD 98 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSA---SGTIKVWD 98 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhccccc---CCceeeee
Confidence 345578899999998778899999999999999999888888889999999999999999999999988 99999999
Q ss_pred ccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeE
Q 023822 108 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYI 184 (276)
Q Consensus 108 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i 184 (276)
++..+.++++.+|...+.++.|+|-+.++++++.|..+++||++...+.+.+ +...+.++.|+|+|++++.+. |..+
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tv 178 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTV 178 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCccee
Confidence 9999999999999999999999999999999999999999999988888888 445577899999999999998 6999
Q ss_pred EEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCc
Q 023822 185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM 264 (276)
Q Consensus 185 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 264 (276)
++||...++. ...+..|...+..+.|+|..-+++.|+.|+++++||+++.+.+.... .....|.+++|+|+++
T Consensus 179 ki~d~~agk~----~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~---~~~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 179 KIWDLTAGKL----SKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK---PETDGVRSLAFNPDGK 251 (825)
T ss_pred eeeccccccc----ccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC---CccCCceeeeecCCce
Confidence 9999988775 66677899999999999999999999999999999999988888877 4678899999999999
Q ss_pred EEEEecCCC
Q 023822 265 FVISGRVSP 273 (276)
Q Consensus 265 ~l~~~~~dg 273 (276)
.+++|....
T Consensus 252 ~~~~G~q~s 260 (825)
T KOG0267|consen 252 IVLSGEQIS 260 (825)
T ss_pred eeecCchhh
Confidence 999887654
No 92
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=4.4e-29 Score=189.90 Aligned_cols=237 Identities=15% Similarity=0.226 Sum_probs=187.8
Q ss_pred cCCCcEEEEEEcCC-CCEEEEeecCCeEEEEEccCC----------eeeeeeeeeeeceEEEEEeccCC-eEEEeccCCC
Q 023822 32 DYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAA----------TCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGW 99 (276)
Q Consensus 32 ~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~ 99 (276)
.|.+.|+.+++.|+ ...+|+.+..+.+.|||..+- .+-..+.+|...-.+++|++... ++++++.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~--- 198 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD--- 198 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC---
Confidence 58999999999995 456778888999999998642 12236788888788899998654 5666666
Q ss_pred CCceEEEEccCCc-------eeeeecccCcceEEEEeccC-CCEEEEeeCCCeEEEEeccC--ceeeeeE--eecCCCee
Q 023822 100 DESLRLLSLHDNK-------YLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRA--EKCQGLL--RVQGRPAA 167 (276)
Q Consensus 100 d~~i~~~d~~~~~-------~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~--~~~~~~~--~~~~~~~~ 167 (276)
|+.|.+||+.... +...+.+|...|..++|++. ..+|++++.|+.+.|||+|+ .++.+.. +...+.++
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence 9999999987542 34567899999999999995 45899999999999999995 3444443 66778999
Q ss_pred EecCCC-cEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcEEEEECCCCcEEE--
Q 023822 168 AYDDQG-LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLS-- 242 (276)
Q Consensus 168 ~~~~~~-~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~-- 242 (276)
+|+|-+ .+||+++ |++|.+||+|+... ..+.+.+|...|.++.|+|.. ..||+++.|+.+.+||+..-...+
T Consensus 279 ~fnp~~~~ilAT~S~D~tV~LwDlRnL~~---~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 279 AFNPFNEFILATGSADKTVALWDLRNLNK---PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred EeCCCCCceEEeccCCCcEEEeechhccc---CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence 999965 6667776 99999999999765 477888999999999999964 778999999999999986432221
Q ss_pred ---------EeecCCCCCCceEEEEECCCCcE-EEEecCCCC
Q 023822 243 ---------TYNVKPVSRNSTLEASFSPEGMF-VISGRVSPF 274 (276)
Q Consensus 243 ---------~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~dg~ 274 (276)
.+-.|.||...|..+.|+|+..+ +++.++|+.
T Consensus 356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~ 397 (422)
T KOG0264|consen 356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNI 397 (422)
T ss_pred hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCce
Confidence 22334589999999999999876 566676654
No 93
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.3e-29 Score=177.46 Aligned_cols=241 Identities=11% Similarity=0.056 Sum_probs=189.9
Q ss_pred eccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC---eeeeeeeeeeeceEEEEEec--cCCeEEEeccCCCCCceE
Q 023822 30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDESLR 104 (276)
Q Consensus 30 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~d~~i~ 104 (276)
-..|.+.|..+...--|+.|||++.|++|+|+...+. +++.++.+|.++|..++|.. .|..|++++. ||.|.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsY---DgkVI 83 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSY---DGKVI 83 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeec---CceEE
Confidence 3468888888888878999999999999999998754 56888999999999999986 7899999998 99999
Q ss_pred EEEccCCce--eeeecccCcceEEEEeccC--CCEEEEeeCCCeEEEEeccCc-e----eeeeEeecCCCeeEecCC---
Q 023822 105 LLSLHDNKY--LRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAE-K----CQGLLRVQGRPAAAYDDQ--- 172 (276)
Q Consensus 105 ~~d~~~~~~--~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~-~----~~~~~~~~~~~~~~~~~~--- 172 (276)
||.-.+++- ......|...|++++|.|. |-.|++++.||.|.+.+.+.. . .+..-|..++++++|.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 999887743 3355679999999999986 458999999999999998865 1 122227778889999875
Q ss_pred C------------cEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC----cEEEEeecCCcEEEEECC
Q 023822 173 G------------LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG----RLMLLTTMEGHIHVLDSF 236 (276)
Q Consensus 173 ~------------~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i~d~~ 236 (276)
| +++.+|.|..|++|+..... -.....+.+|...|..++|.|.- .+||+++.||++.||...
T Consensus 164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~--w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS--WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred ccccccCcccccceeeccCCccceeeeecCCcc--hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence 3 34455559999999998752 12233478899999999999963 579999999999999865
Q ss_pred CCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 237 RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
.................+..+.||+.|..|++++.|..|
T Consensus 242 ~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkv 280 (299)
T KOG1332|consen 242 EEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKV 280 (299)
T ss_pred CccCcccccccccCCcceEEEEEeccccEEEEecCCcEE
Confidence 221111111111356789999999999999999888654
No 94
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.6e-29 Score=191.41 Aligned_cols=230 Identities=17% Similarity=0.215 Sum_probs=190.1
Q ss_pred CCcEEEEEEcCCCC-EEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc
Q 023822 34 NGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 112 (276)
Q Consensus 34 ~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~ 112 (276)
.+.|.+++|+|... -+|+.+. -.+.||+..+......+......+.++.|..||+.+++|.. .|.|++||+.+..
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~---sG~V~vfD~k~r~ 101 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDE---SGHVKVFDMKSRV 101 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCC---cCcEEEeccccHH
Confidence 36799999999443 3554443 46999999888887777777888999999999999999998 9999999987777
Q ss_pred eeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCc-EEEEee-CCeEEEE
Q 023822 113 YLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGL-VFAVAF-GGYIRMF 187 (276)
Q Consensus 113 ~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~-~l~~~~-d~~i~~~ 187 (276)
.++.+.+|+.++..+.|+|+++ .|++|+.|+.+++||+.+......+ +...+++.+++|... ++++|+ ||.|++|
T Consensus 102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence 8889999999999999999765 7888999999999999998865455 667789999999764 555555 9999999
Q ss_pred ecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcE-EEEeecCCCCCCceEEEEECCCCcEE
Q 023822 188 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEGMFV 266 (276)
Q Consensus 188 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l 266 (276)
|++.... + +.. -.|..+|..+.+-|.|..+++++. ..|++||+.+|.. +.... .|...|+++++..++..|
T Consensus 182 DtR~~~~-~--v~e-lnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~---~H~KtVTcL~l~s~~~rL 253 (487)
T KOG0310|consen 182 DTRSLTS-R--VVE-LNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMF---NHNKTVTCLRLASDSTRL 253 (487)
T ss_pred EeccCCc-e--eEE-ecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhh---cccceEEEEEeecCCceE
Confidence 9998642 1 333 357889999999999998888865 4799999986554 44444 488999999999999999
Q ss_pred EEecCCCCC
Q 023822 267 ISGRVSPFS 275 (276)
Q Consensus 267 ~~~~~dg~v 275 (276)
++|+-|+.|
T Consensus 254 lS~sLD~~V 262 (487)
T KOG0310|consen 254 LSGSLDRHV 262 (487)
T ss_pred eecccccce
Confidence 999999976
No 95
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=7.6e-29 Score=206.57 Aligned_cols=239 Identities=16% Similarity=0.201 Sum_probs=195.7
Q ss_pred cCCCcEEEEEEcCCCCEEEEee--cCCeEEEEEccC------------CeeeeeeeeeeeceEEEEEeccCCeEEEeccC
Q 023822 32 DYNGRISSMDFHKSSSYLVTAS--DDESIRLYDVTA------------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN 97 (276)
Q Consensus 32 ~h~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 97 (276)
.+...|.+++.+|++..+|||+ .|+.++||+.+. .+.+.....|.+.|.|+.|+|||++|++|+.
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD- 89 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD- 89 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC-
Confidence 3456799999999999999999 899999998752 2455667789999999999999999999999
Q ss_pred CCCCceEEEEccC------------------CceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE
Q 023822 98 GWDESLRLLSLHD------------------NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159 (276)
Q Consensus 98 ~~d~~i~~~d~~~------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 159 (276)
|+.|.+|+... .+....+.+|...|..++|+|++.+|++++.|++|.+||.++.+.+..+
T Consensus 90 --D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl 167 (942)
T KOG0973|consen 90 --DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVL 167 (942)
T ss_pred --cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeee
Confidence 99999999762 1356678899999999999999999999999999999999999888888
Q ss_pred --eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCee--eeeecCCCCCceEEEECCCCcEEEEeec----CCcE
Q 023822 160 --RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFD--IFSVGGDISDANVVKFSNDGRLMLLTTM----EGHI 230 (276)
Q Consensus 160 --~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i 230 (276)
|...+..+.|+|-|+++|+-+ |++|++|++......... .+.......-+..+.|||||++|++... -.++
T Consensus 168 ~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~ 247 (942)
T KOG0973|consen 168 RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI 247 (942)
T ss_pred ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee
Confidence 666788999999999999988 899999997654321111 1111112235678999999999998642 3468
Q ss_pred EEEECCCCcEEEEeecCCCCCCceEEEEECCC-----Cc------------EEEEecCCCCCC
Q 023822 231 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-----GM------------FVISGRVSPFSS 276 (276)
Q Consensus 231 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~------------~l~~~~~dg~vs 276 (276)
.|.+-.+.+.-..+- +|.+++..++|+|. .+ .+|+|+.|+.+|
T Consensus 248 ~IieR~tWk~~~~Lv---GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlS 307 (942)
T KOG0973|consen 248 AIIERGTWKVDKDLV---GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLS 307 (942)
T ss_pred EEEecCCceeeeeee---cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEE
Confidence 999987777777777 79999999999982 12 689999999875
No 96
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.1e-29 Score=187.84 Aligned_cols=206 Identities=14% Similarity=0.225 Sum_probs=151.7
Q ss_pred cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeee-eeeceEEEEEeccCCeEEEeccCCCCCc
Q 023822 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDES 102 (276)
Q Consensus 24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~ 102 (276)
++..+++.+|..+|..+.||||.++|++|+.|..+++||+.+|.....+.. +...+.+++|.||+..+++|+. |+.
T Consensus 259 ~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~---dr~ 335 (519)
T KOG0293|consen 259 FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSP---DRT 335 (519)
T ss_pred eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCC---CCc
Confidence 788899999999999999999999999999999999999999998877754 3578999999999999999998 999
Q ss_pred eEEEEccCCceeeeecccC-cceEEEEeccCCCEEEEeeCCCeEEE----------------------------------
Q 023822 103 LRLLSLHDNKYLRYFKGHH-DRVVSLSLCSSKDCFISGSLDRTVLL---------------------------------- 147 (276)
Q Consensus 103 i~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~i---------------------------------- 147 (276)
+..||++... ...+++-. ..|.+++..+||+++++.+.|..|++
T Consensus 336 i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 336 IIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred EEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEc
Confidence 9999986432 22222211 23455555555555554444544544
Q ss_pred -------EeccCceeeeeEeecC----CCeeEecC-CCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEE
Q 023822 148 -------WDQRAEKCQGLLRVQG----RPAAAYDD-QGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKF 214 (276)
Q Consensus 148 -------wd~~~~~~~~~~~~~~----~~~~~~~~-~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 214 (276)
||++..+.+..+.++. +..-+|-. +..++++|+ |+.|++|+..+++. +..+.+|...+++++|
T Consensus 415 ~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl----l~~LsGHs~~vNcVsw 490 (519)
T KOG0293|consen 415 QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL----LAVLSGHSKTVNCVSW 490 (519)
T ss_pred ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCce----eEeecCCcceeeEEec
Confidence 4444433333331111 11122222 336677777 89999999888775 7788999999999999
Q ss_pred CCCC-cEEEEeecCCcEEEEECCC
Q 023822 215 SNDG-RLMLLTTMEGHIHVLDSFR 237 (276)
Q Consensus 215 ~~~~-~~l~~~~~dg~i~i~d~~~ 237 (276)
+|.. ..+|+++.||+|+||-...
T Consensus 491 NP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 491 NPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCCHHHhhccCCCCeEEEecCCc
Confidence 9965 6789999999999998653
No 97
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.5e-28 Score=199.97 Aligned_cols=204 Identities=18% Similarity=0.290 Sum_probs=169.3
Q ss_pred cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEec-cCCeEEEeccCCCCCc
Q 023822 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDES 102 (276)
Q Consensus 24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~ 102 (276)
-++...+.||.+.|..+.|+.+ ++|++++.|.+|++|++...+++..|. |..-|+|++|+| |.+++++|+- |+.
T Consensus 359 ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSL---D~K 433 (712)
T KOG0283|consen 359 EKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSL---DGK 433 (712)
T ss_pred ccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeeccc---ccc
Confidence 4667889999999999999986 589999999999999999999998885 778999999999 6789999998 999
Q ss_pred eEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe----------ecCCCeeEecCC
Q 023822 103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR----------VQGRPAAAYDDQ 172 (276)
Q Consensus 103 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----------~~~~~~~~~~~~ 172 (276)
|+||++...+.+.-. .-..-|++++|.|+|+..+.|+.+|.+++|+....+.....+ ...|+.+.+.|.
T Consensus 434 vRiWsI~d~~Vv~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~ 512 (712)
T KOG0283|consen 434 VRLWSISDKKVVDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPG 512 (712)
T ss_pred eEEeecCcCeeEeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCC
Confidence 999999887765444 355889999999999999999999999999999877665551 224677888875
Q ss_pred C--cEEEEeeCCeEEEEecccCCCCCeeeeeecC--CCCCceEEEECCCCcEEEEeecCCcEEEEECCC
Q 023822 173 G--LVFAVAFGGYIRMFDARKYEKGPFDIFSVGG--DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR 237 (276)
Q Consensus 173 ~--~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 237 (276)
. ++|+++.|..|+|||.+.... +..+.+ ....-....|+.||++|+++++|..|++|++..
T Consensus 513 ~~~~vLVTSnDSrIRI~d~~~~~l----v~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 513 DPDEVLVTSNDSRIRIYDGRDKDL----VHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred CCCeEEEecCCCceEEEeccchhh----hhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 4 588898999999999976443 223332 223445678999999999999999999999743
No 98
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.5e-29 Score=178.23 Aligned_cols=208 Identities=17% Similarity=0.231 Sum_probs=171.6
Q ss_pred hccccceeeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccC-CeEEEeccCCC
Q 023822 22 QSMEVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGW 99 (276)
Q Consensus 22 ~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~ 99 (276)
.+-.++..+++|...|.++.|++ +...+++++.|++|++|+...++.++++.+|...|....|+|.. +.+++++.
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg--- 168 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASG--- 168 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccC---
Confidence 44457888999999999999998 56678889999999999999999999999999999999999964 56666666
Q ss_pred CCceEEEEccCCceeeeecccCcceEEEEecc-CCCEEEEeeCCCeEEEEeccCce-eeeeE--eecCCCeeEecCCC-c
Q 023822 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEK-CQGLL--RVQGRPAAAYDDQG-L 174 (276)
Q Consensus 100 d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~-~~~~~--~~~~~~~~~~~~~~-~ 174 (276)
|+.+++||++.......+..|..+|.++.|+. +.+.+++|+.|+.|+.||+++.+ ++..+ +.-.++.+.|+|.. .
T Consensus 169 d~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~ 248 (311)
T KOG0277|consen 169 DGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHAS 248 (311)
T ss_pred CceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhh
Confidence 99999999987655555889999999999987 55689999999999999999765 34444 44557899999976 4
Q ss_pred EEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECC-CCcEEEEeecCCcEEEEEC
Q 023822 175 VFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDS 235 (276)
Q Consensus 175 ~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~ 235 (276)
+|++++ |=++++||....... +.....|..-+..+.|++ ++.++|+++-|+.++||+.
T Consensus 249 lLaSasYDmT~riw~~~~~ds~---~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 249 LLASASYDMTVRIWDPERQDSA---IETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred HhhhccccceEEecccccchhh---hhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 555555 999999999864421 333456777788899998 5678999999999999983
No 99
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=3.6e-29 Score=193.17 Aligned_cols=228 Identities=17% Similarity=0.266 Sum_probs=201.5
Q ss_pred CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe--eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC
Q 023822 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN 111 (276)
Q Consensus 34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~ 111 (276)
..-|.++.+.|||+.|++|++-.++.|||+.... ...++....-.+..++.+||.+..+++.. ||.|.|||+.+.
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccs---dGnI~vwDLhnq 541 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCS---DGNIAVWDLHNQ 541 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeecc---CCcEEEEEcccc
Confidence 5678899999999999999999999999997543 33444444556888999999999999988 999999999999
Q ss_pred ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-CCeEEEEec
Q 023822 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDA 189 (276)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~ 189 (276)
..++.|++|.+.+.||.++++|..|.+|+-|++|+.||+++++..... ....+.++.++|++.++++|. ++.+.+...
T Consensus 542 ~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~ 621 (705)
T KOG0639|consen 542 TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT 621 (705)
T ss_pred eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEec
Confidence 999999999999999999999999999999999999999998877665 445678899999999999999 788888887
Q ss_pred ccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEe
Q 023822 190 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 269 (276)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 269 (276)
...+ .+.+..|.+.|.++.|.+.|+++++.+.|+.+..|.+.-|..+...+ ..+.|.++.+|.|.+++++|
T Consensus 622 skp~-----kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk----E~SsVlsCDIS~ddkyIVTG 692 (705)
T KOG0639|consen 622 SKPE-----KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK----ESSSVLSCDISFDDKYIVTG 692 (705)
T ss_pred CCcc-----ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc----ccCcceeeeeccCceEEEec
Confidence 7644 45566788899999999999999999999999999999998887776 57899999999999999999
Q ss_pred cCCC
Q 023822 270 RVSP 273 (276)
Q Consensus 270 ~~dg 273 (276)
+.|.
T Consensus 693 SGdk 696 (705)
T KOG0639|consen 693 SGDK 696 (705)
T ss_pred CCCc
Confidence 9985
No 100
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.4e-28 Score=180.20 Aligned_cols=239 Identities=16% Similarity=0.205 Sum_probs=202.7
Q ss_pred ccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCc
Q 023822 23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES 102 (276)
Q Consensus 23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~ 102 (276)
..+.++.+.||.+.|..++.......+.+++.|.+.+||.+++++++..+.+|.+.|.++.|++.+..+++++. |++
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSG---D~t 213 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASG---DET 213 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccC---Ccc
Confidence 45667788999999999999887789999999999999999999999999999999999999999999999988 999
Q ss_pred eEEEEc------cC----------------------------------CceeeeecccCcceEEEEeccCCCEEEEeeCC
Q 023822 103 LRLLSL------HD----------------------------------NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD 142 (276)
Q Consensus 103 i~~~d~------~~----------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 142 (276)
-.||.. .. ..++..+.+|.+.|.+..|...++.+++++.|
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD 293 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD 293 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecc
Confidence 999972 11 01344577899999999999999999999999
Q ss_pred CeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCc
Q 023822 143 RTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219 (276)
Q Consensus 143 ~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 219 (276)
.+..+||+++++.+..+ |......++-+|..+++++++ |.+.++||.+..- .....+.+|...|+++.|..+.+
T Consensus 294 RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI---~sV~VFQGHtdtVTS~vF~~dd~ 370 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI---QSVAVFQGHTDTVTSVVFNTDDR 370 (481)
T ss_pred ccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhc---ceeeeecccccceeEEEEecCCc
Confidence 99999999999999988 666678889999999998888 9999999998422 23556789999999999998765
Q ss_pred EEEEeecCCcEEEEECCCCc-EEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822 220 LMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS 272 (276)
Q Consensus 220 ~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 272 (276)
+++|+.|.+|++||+++.. ++.++. ..++++.++.+..++.++.--++
T Consensus 371 -vVSgSDDrTvKvWdLrNMRsplATIR----tdS~~NRvavs~g~~iIAiPhDN 419 (481)
T KOG0300|consen 371 -VVSGSDDRTVKVWDLRNMRSPLATIR----TDSPANRVAVSKGHPIIAIPHDN 419 (481)
T ss_pred -eeecCCCceEEEeeeccccCcceeee----cCCccceeEeecCCceEEeccCC
Confidence 8899999999999998754 566666 56777888877766666654433
No 101
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-26 Score=169.08 Aligned_cols=241 Identities=10% Similarity=0.152 Sum_probs=190.1
Q ss_pred ccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC----CeeeeeeeeeeeceEEEEEec--cCCeEEEeccCCCCCceE
Q 023822 31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA----ATCLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDESLR 104 (276)
Q Consensus 31 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~d~~i~ 104 (276)
.+|.+-|.++.|.+.|+.+|+|+.|++++|||..+ ..+....+.|.+.|..+.|.+ -|+.+++++. |+++.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~---Drtv~ 86 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY---DRTVS 86 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEec---CCcee
Confidence 47899999999999999999999999999999653 356777889999999999986 4788999998 99999
Q ss_pred EEEccC---------CceeeeecccCcceEEEEeccC--CCEEEEeeCCCeEEEEeccCceeeee------Ee-------
Q 023822 105 LLSLHD---------NKYLRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGL------LR------- 160 (276)
Q Consensus 105 ~~d~~~---------~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~------~~------- 160 (276)
||.-.. .....++......|+++.|.|. |-++++++.||.++||+....-.... +.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 997521 1234456677889999999995 56899999999999998765432222 21
Q ss_pred --ecCCCeeEecCCC---cEEEEeeCC------eEEEEecccCCCCCeeeeeecCCCCCceEEEECCC-C---cEEEEee
Q 023822 161 --VQGRPAAAYDDQG---LVFAVAFGG------YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-G---RLMLLTT 225 (276)
Q Consensus 161 --~~~~~~~~~~~~~---~~l~~~~d~------~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~---~~l~~~~ 225 (276)
...-.|+.|+|.. .+++++++. .+++|..............+..|..+|+.++|.|+ | ..||+++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee
Confidence 1123378888753 688888855 89999887766555556778899999999999996 2 5789999
Q ss_pred cCCcEEEEECCCCc-----------------EEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 226 MEGHIHVLDSFRGT-----------------LLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 226 ~dg~i~i~d~~~~~-----------------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
.|| |+||.+.... .+..+.....|.+.|..+.|+-.|..|++.|.||.|
T Consensus 247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~V 312 (361)
T KOG2445|consen 247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCV 312 (361)
T ss_pred cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCcee
Confidence 999 9999986311 122233333799999999999999999999999987
No 102
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=6.6e-28 Score=197.24 Aligned_cols=225 Identities=19% Similarity=0.296 Sum_probs=196.6
Q ss_pred CCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeee-eeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC
Q 023822 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT-INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN 111 (276)
Q Consensus 33 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~ 111 (276)
|...+.+..|. ..++++++.|++|++||..++..+.. +.+|.+.|.++++..-+..+++|+. |.++++||..++
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~---D~t~rvWd~~sg 281 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGST---DKTERVWDCSTG 281 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEec---CCcEEeEecCCC
Confidence 56778888888 56899999999999999999998888 9999999999999887889999998 999999999999
Q ss_pred ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEeeCCeEEEEec
Q 023822 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAFGGYIRMFDA 189 (276)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~ 189 (276)
++...+.+|.+.+.++... ...+++|+.|.+|++|++.++..+..+ +...+.++.++ .+.+++++.|+.|++||+
T Consensus 282 ~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~ 358 (537)
T KOG0274|consen 282 ECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVKVWDP 358 (537)
T ss_pred cEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-CCEEEEEecCceEEEEEh
Confidence 9999999999999998774 457888999999999999999999888 45567777777 445555555999999999
Q ss_pred ccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCC-cEEEEeecCCCCCCceEEEEECCCCcEEEE
Q 023822 190 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVIS 268 (276)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 268 (276)
.+++. +..+.+|...|.++.+.+. ..+++|+.|+.|++||+.+. +++..+. +|..-+..+.+ .+++|++
T Consensus 359 ~~~~c----l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~---~h~~~v~~l~~--~~~~Lvs 428 (537)
T KOG0274|consen 359 RTGKC----LKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ---GHTSLVSSLLL--RDNFLVS 428 (537)
T ss_pred hhcee----eeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc---CCccccccccc--ccceeEe
Confidence 98776 7788899999999988776 78999999999999999999 8999998 67777765554 6679999
Q ss_pred ecCCCCC
Q 023822 269 GRVSPFS 275 (276)
Q Consensus 269 ~~~dg~v 275 (276)
++.||+|
T Consensus 429 ~~aD~~I 435 (537)
T KOG0274|consen 429 SSADGTI 435 (537)
T ss_pred ccccccE
Confidence 9999975
No 103
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=7.2e-29 Score=180.89 Aligned_cols=202 Identities=20% Similarity=0.297 Sum_probs=172.4
Q ss_pred eeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC------------C------ceeeeecccCcceEEEEec
Q 023822 69 LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD------------N------KYLRYFKGHHDRVVSLSLC 130 (276)
Q Consensus 69 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~------------~------~~~~~~~~~~~~i~~~~~~ 130 (276)
...+..|+.++.+.+|++||..+++|+. |..|++.|++. + ..++++..|.++|+++.|+
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsa---D~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSA---DASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCC---cceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence 3456789999999999999999999998 99999999862 1 2466788899999999999
Q ss_pred cCCCEEEEeeCCCeEEEEeccCceeeeeE----eecCCCeeEecCCCcEEEEeeC-CeEEEEecccCCCCCeeeeeecCC
Q 023822 131 SSKDCFISGSLDRTVLLWDQRAEKCQGLL----RVQGRPAAAYDDQGLVFAVAFG-GYIRMFDARKYEKGPFDIFSVGGD 205 (276)
Q Consensus 131 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~d-~~i~~~d~~~~~~~~~~~~~~~~~ 205 (276)
|....|++++.|++|+++|+......+.+ ...++.++.|+|.|.+++++.| ..+++||+.+.+.- .....-..|
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcf-vsanPd~qh 260 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCF-VSANPDDQH 260 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEe-eecCccccc
Confidence 99999999999999999999865443332 5677899999999999999996 89999999986641 111234567
Q ss_pred CCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 206 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 206 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
...|+++.+++.|++.++++.||.|++||--+++++.++.... ....|.+..|..+|+|+++.+.|.+|
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH-~gsevcSa~Ftkn~kyiLsSG~DS~v 329 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH-GGSEVCSAVFTKNGKYILSSGKDSTV 329 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc-CCceeeeEEEccCCeEEeecCCccee
Confidence 8899999999999999999999999999999999999987643 35679999999999999999999876
No 104
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.1e-26 Score=161.26 Aligned_cols=249 Identities=15% Similarity=0.175 Sum_probs=191.3
Q ss_pred HHhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEcc------CCe---------eeeeeeeeeeceEEEE
Q 023822 19 EILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT------AAT---------CLKTINSKKYGVDLVC 83 (276)
Q Consensus 19 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~------~~~---------~~~~~~~~~~~v~~~~ 83 (276)
...+.++.+..+.. ...|.+++|+|.|.+.++|+...+++|-... .+. .-..-+.|.+.|.|.+
T Consensus 18 ~~k~~f~~i~~l~d-sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 18 KEKKHFEAINILED-SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred ccccceEEEEEecc-hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEE
Confidence 33455666666654 6789999999999999999999999886432 111 1122346788999999
Q ss_pred EeccCCeEEEeccCCCCCceEEEEccCCce-----eeeecccCcceEEEEeccC----CCEEEEeeC-CCeEEEEeccCc
Q 023822 84 FTSHPTTVIYSSKNGWDESLRLLSLHDNKY-----LRYFKGHHDRVVSLSLCSS----KDCFISGSL-DRTVLLWDQRAE 153 (276)
Q Consensus 84 ~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~-----~~~~~~~~~~i~~~~~~~~----~~~l~~~~~-d~~i~iwd~~~~ 153 (276)
|+|+|+.+++++. |..|++...+...+ -..+.-|.+.|..++|..+ +.+|++++. |..|++-|...+
T Consensus 97 ws~~geliatgsn---dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g 173 (350)
T KOG0641|consen 97 WSPCGELIATGSN---DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG 173 (350)
T ss_pred ecCccCeEEecCC---CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC
Confidence 9999999999998 99999987765432 2356779999999999753 446777654 778888899888
Q ss_pred eeeeeEeecCCCee-EecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecC---CCCCceEEEECCCCcEEEEeecCC
Q 023822 154 KCQGLLRVQGRPAA-AYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGG---DISDANVVKFSNDGRLMLLTTMEG 228 (276)
Q Consensus 154 ~~~~~~~~~~~~~~-~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg 228 (276)
+..+.+..+.-..+ .++-++-.++.++ |.+|++||++-.......-..+.. ..+.|.+++..|.|++|++|-.|.
T Consensus 174 ~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds 253 (350)
T KOG0641|consen 174 QGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS 253 (350)
T ss_pred CcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC
Confidence 88888754443333 3456777888887 999999999875431111111111 235789999999999999999999
Q ss_pred cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCC
Q 023822 229 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPF 274 (276)
Q Consensus 229 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 274 (276)
...+||++.+..++.+. .|...|.++.|+|...||++++.|-.
T Consensus 254 sc~lydirg~r~iq~f~---phsadir~vrfsp~a~yllt~syd~~ 296 (350)
T KOG0641|consen 254 SCMLYDIRGGRMIQRFH---PHSADIRCVRFSPGAHYLLTCSYDMK 296 (350)
T ss_pred ceEEEEeeCCceeeeeC---CCccceeEEEeCCCceEEEEecccce
Confidence 99999999999999998 69999999999999999999998853
No 105
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-27 Score=188.99 Aligned_cols=207 Identities=14% Similarity=0.192 Sum_probs=182.8
Q ss_pred cccceeecc-CCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeee-eeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822 24 MEVGMSFRD-YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT-INSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101 (276)
Q Consensus 24 ~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~ 101 (276)
.+....+.+ |...|-+++|+ +..+.+|+.|+.|..+|+...+.... +.+|...|..+.|++++.++++++. |+
T Consensus 249 ~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn---DN 323 (484)
T KOG0305|consen 249 QKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN---DN 323 (484)
T ss_pred ccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC---cc
Confidence 445566777 99999999998 57899999999999999998776555 8889999999999999999999998 99
Q ss_pred ceEEEEccCCceeeeecccCcceEEEEecc-CCCEEEEee--CCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEE
Q 023822 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGS--LDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFA 177 (276)
Q Consensus 102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ 177 (276)
.+.|||....++...+..|.+.|..++|+| ...+||+|+ .|+.|++||..+++.+..+ ....|..+.|++..+-++
T Consensus 324 ~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~ 403 (484)
T KOG0305|consen 324 VVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELL 403 (484)
T ss_pred ceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEE
Confidence 999999988889999999999999999999 455888875 4999999999999999888 666789999999885555
Q ss_pred Eee---CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCc
Q 023822 178 VAF---GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT 239 (276)
Q Consensus 178 ~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 239 (276)
++. ++.|.+|+..+.+. ...+.+|...|..++++|||..+++|+.|.++++|++.+..
T Consensus 404 sthG~s~n~i~lw~~ps~~~----~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 404 STHGYSENQITLWKYPSMKL----VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred EecCCCCCcEEEEeccccce----eeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCCC
Confidence 544 68999999988655 77788999999999999999999999999999999987653
No 106
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=175.09 Aligned_cols=246 Identities=16% Similarity=0.240 Sum_probs=201.9
Q ss_pred hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEc------cC------------------------------
Q 023822 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV------TA------------------------------ 65 (276)
Q Consensus 22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~------~~------------------------------ 65 (276)
++.+...++.||.+.|++++|++.+.++++++.|++-.||.. ..
T Consensus 178 Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD 257 (481)
T KOG0300|consen 178 ESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSD 257 (481)
T ss_pred ccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccC
Confidence 345667889999999999999999999999999999999972 10
Q ss_pred ----CeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeC
Q 023822 66 ----ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL 141 (276)
Q Consensus 66 ----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 141 (276)
..++..+.+|...|.+..|...++.+++++- |.+-.+||+++++++..+.+|....+.++-+|..+++++.+.
T Consensus 258 ~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSW---DRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr 334 (481)
T KOG0300|consen 258 GHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASW---DRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR 334 (481)
T ss_pred CceeeeeeeeeeccccceEehhhhcCcceeeeeec---cccceeeeeccCceeccccCcchhccccccCCcceEEEEecc
Confidence 0134567788889999999999999999986 999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeccCc-eeeeeE--eecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC
Q 023822 142 DRTVLLWDQRAE-KCQGLL--RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG 218 (276)
Q Consensus 142 d~~i~iwd~~~~-~~~~~~--~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 218 (276)
|.+.++||++.. ..+..+ |...+.++.|..+.+++.++.|.+|++||+++.+.+.. ... ...+++.++.+..+
T Consensus 335 DtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplA-TIR---tdS~~NRvavs~g~ 410 (481)
T KOG0300|consen 335 DTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLA-TIR---TDSPANRVAVSKGH 410 (481)
T ss_pred CceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcce-eee---cCCccceeEeecCC
Confidence 999999999943 233444 56678899999999998888899999999999775322 222 34588999999988
Q ss_pred cEEEEeecCCcEEEEECCCCcEEEEee--cCCCCCCceEEEEECCCC--cEEEEecCCCCC
Q 023822 219 RLMLLTTMEGHIHVLDSFRGTLLSTYN--VKPVSRNSTLEASFSPEG--MFVISGRVSPFS 275 (276)
Q Consensus 219 ~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~v~~~~~s~~g--~~l~~~~~dg~v 275 (276)
+.++.--.+..|++||+. |..+..+. ...+|..-|.+++|..+- .-|++++-|..|
T Consensus 411 ~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v 470 (481)
T KOG0300|consen 411 PIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMV 470 (481)
T ss_pred ceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCccccccccccccee
Confidence 889888888999999985 44444443 233788899999997654 347788777654
No 107
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=2.8e-27 Score=188.82 Aligned_cols=242 Identities=16% Similarity=0.231 Sum_probs=204.8
Q ss_pred eeehHHHhhccccceeeccCCCcEEE-EEEcC-CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeE
Q 023822 14 LELSEEILQSMEVGMSFRDYNGRISS-MDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV 91 (276)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 91 (276)
+.+++...+.+.....+.+|.+-|.+ ++|-+ ++-.|++|+.|.++.+|......+...+.+|+..|.++....++. +
T Consensus 37 ~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~ 115 (745)
T KOG0301|consen 37 VKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-L 115 (745)
T ss_pred eeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-e
Confidence 44455545556666778889888887 88876 555699999999999999999999999999999999999877776 7
Q ss_pred EEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEe
Q 023822 92 IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAY 169 (276)
Q Consensus 92 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~ 169 (276)
++++- |.++++|.+ +++...+.+|+..|++++.-|++ .+++|+.|.+|++|.- ++..+++ |...++.+++
T Consensus 116 iSgSW---D~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~v 187 (745)
T KOG0301|consen 116 ISGSW---DSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAV 187 (745)
T ss_pred Eeccc---ccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEE
Confidence 88775 999999976 45566699999999999999988 7999999999999985 5566666 7777999999
Q ss_pred cCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCC
Q 023822 170 DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV 249 (276)
Q Consensus 170 ~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 249 (276)
-+++.++.++.||.|++|++. ++. +....+|..-+.++...+++..++++++|++++||+.. ++.+.+. .
T Consensus 188 l~~~~flScsNDg~Ir~w~~~-ge~----l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~---l 257 (745)
T KOG0301|consen 188 LDDSHFLSCSNDGSIRLWDLD-GEV----LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT---L 257 (745)
T ss_pred ecCCCeEeecCCceEEEEecc-Cce----eeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe---c
Confidence 999999999999999999994 443 77788999999999988888899999999999999965 7888887 3
Q ss_pred CCCceEEEEECCCCcEEEEecCCCCC
Q 023822 250 SRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 250 ~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
....|+++.+-++|. +++|++||.|
T Consensus 258 PttsiWsa~~L~NgD-Ivvg~SDG~V 282 (745)
T KOG0301|consen 258 PTTSIWSAKVLLNGD-IVVGGSDGRV 282 (745)
T ss_pred CccceEEEEEeeCCC-EEEeccCceE
Confidence 455899999998887 6678888875
No 108
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.1e-26 Score=167.30 Aligned_cols=221 Identities=15% Similarity=0.147 Sum_probs=179.5
Q ss_pred cceeeccCCCcEEEEEEcCCCC--EEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822 26 VGMSFRDYNGRISSMDFHKSSS--YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (276)
Q Consensus 26 ~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i 103 (276)
....+-.|.+.|+++.|.+.-. .|++|+.||.|.+|+.....++..+++|.+.|+.++.+|.++..++.+. |+.+
T Consensus 75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~---D~~l 151 (362)
T KOG0294|consen 75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGG---DQVL 151 (362)
T ss_pred hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcC---Ccee
Confidence 3455668999999999998654 8999999999999999999999999999999999999999999998888 9999
Q ss_pred EEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEeeCC
Q 023822 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAFGG 182 (276)
Q Consensus 104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~d~ 182 (276)
+.||+-.++....++- ......+.|+|.|.+|+....+ .|-+|.+.+......+ ....+.++.|...+.+++++.|+
T Consensus 152 r~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~ 229 (362)
T KOG0294|consen 152 RTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNE 229 (362)
T ss_pred eeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCc
Confidence 9999998876555442 2223459999999999988876 5899999887776666 33446677888888888888899
Q ss_pred eEEEEecccCCCCCeeeeeecCCCCCceEEEE--CCCCcEEEEeecCCcEEEEECCCC-----cEEEEeecCCCCCCceE
Q 023822 183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKF--SNDGRLMLLTTMEGHIHVLDSFRG-----TLLSTYNVKPVSRNSTL 255 (276)
Q Consensus 183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~v~ 255 (276)
.|.+||...... ...+.+|...|..+.+ .|++.+|++++.||.|++||++.. +++..+. ....++
T Consensus 230 ~i~~~D~ds~~~----~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n----~~~Rlt 301 (362)
T KOG0294|consen 230 WISLKDTDSDTP----LTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELN----TNVRLT 301 (362)
T ss_pred eEEEeccCCCcc----ceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEee----cCCccc
Confidence 999999987443 6667789999999884 467899999999999999998765 4455554 345555
Q ss_pred EEEE
Q 023822 256 EASF 259 (276)
Q Consensus 256 ~~~~ 259 (276)
++..
T Consensus 302 Cl~~ 305 (362)
T KOG0294|consen 302 CLRV 305 (362)
T ss_pred eeee
Confidence 5544
No 109
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8.5e-28 Score=190.51 Aligned_cols=206 Identities=17% Similarity=0.228 Sum_probs=180.1
Q ss_pred cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC--eeeeeeeeeeeceEEEEE-eccCCeEEEeccCCCCCc
Q 023822 26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA--TCLKTINSKKYGVDLVCF-TSHPTTVIYSSKNGWDES 102 (276)
Q Consensus 26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~~~~d~~ 102 (276)
....++.|...|+.++...+++.|+++|.|-+|++|+...+ -+..++..|...|.|++. .++...+++|+- |+.
T Consensus 65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGL---D~~ 141 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGL---DRK 141 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCC---Ccc
Confidence 45678899999999999999999999999999999999877 577888999999999999 778888888887 999
Q ss_pred eEEEEccCCce----------eeeec-ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEe
Q 023822 103 LRLLSLHDNKY----------LRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAY 169 (276)
Q Consensus 103 i~~~d~~~~~~----------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~ 169 (276)
|.+||++++.. ...+. ++...|++++.++.+..+++|+..+.+++||.++.+.+..+ |...++.+..
T Consensus 142 IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~ 221 (735)
T KOG0308|consen 142 IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLV 221 (735)
T ss_pred EEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEE
Confidence 99999997722 22233 78889999999999999999999999999999999888888 6667889999
Q ss_pred cCCCcEEE-EeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCC
Q 023822 170 DDQGLVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG 238 (276)
Q Consensus 170 ~~~~~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 238 (276)
+++|..+. +++||+|++||+...++ +..+..|...+.++..+|+=..+++|+.||.|..=|+++.
T Consensus 222 ~dDGt~~ls~sSDgtIrlWdLgqQrC----l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 222 NDDGTRLLSASSDGTIRLWDLGQQRC----LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred cCCCCeEeecCCCceEEeeeccccce----eeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99995555 45599999999998776 6667778888999999999999999999999999999884
No 110
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.9e-26 Score=187.49 Aligned_cols=238 Identities=13% Similarity=0.137 Sum_probs=196.4
Q ss_pred cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC-eeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC
Q 023822 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA-TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD 110 (276)
Q Consensus 32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~ 110 (276)
.|+..-+.++|.|+|++|++++.||.|++|+.... +....+..+...|.+++. ...+|++++. ++.|.+|.+..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~---~~tv~~y~fps 85 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSE---QNTVLRYKFPS 85 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeec---cceEEEeeCCC
Confidence 68889999999999999999999999999997655 333444435566776666 5569999998 99999999999
Q ss_pred CceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEEEE
Q 023822 111 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMF 187 (276)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~ 187 (276)
++.-..+....-++.+++|+.+|++++.|+.|-.|++-++........+ +..++.++.|+|.+.+||++. ||.|++|
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 8877677777889999999999999999999999999999988777777 666788999999999999998 9999999
Q ss_pred ecccCCCCCeeeee---ecC-CCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCC
Q 023822 188 DARKYEKGPFDIFS---VGG-DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 263 (276)
Q Consensus 188 d~~~~~~~~~~~~~---~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 263 (276)
|+..+.......-. ... ....+..++|+|+|..+++...|+.|.+|+..+......+.... +...+..++|+|+|
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~-~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL-SSSKFSDLQWSPNG 244 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccc-cccceEEEEEcCCC
Confidence 99986532111000 001 13456779999998888888899999999999999988887554 44559999999999
Q ss_pred cEEEEecCCCCC
Q 023822 264 MFVISGRVSPFS 275 (276)
Q Consensus 264 ~~l~~~~~dg~v 275 (276)
+|||+++.||-|
T Consensus 245 ~YiAAs~~~g~I 256 (933)
T KOG1274|consen 245 KYIAASTLDGQI 256 (933)
T ss_pred cEEeeeccCCcE
Confidence 999999999865
No 111
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.6e-27 Score=192.38 Aligned_cols=231 Identities=16% Similarity=0.233 Sum_probs=188.6
Q ss_pred EEEEEEcC-CCCEEEEeecCCeEEEEEccC---CeeeeeeeeeeeceEEEEEeccCC-eEEEeccCCCCCceEEEEccCC
Q 023822 37 ISSMDFHK-SSSYLVTASDDESIRLYDVTA---ATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDN 111 (276)
Q Consensus 37 v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~~~d~~~~ 111 (276)
+..+.|+. +.++|||++..|.|.+||+.. .+.+..+..|+..++++.|++... +|++|+. ||.|++||++..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQ---Dg~vK~~DlR~~ 166 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQ---DGTVKCWDLRSK 166 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCC---CceEEEEeeecc
Confidence 45577775 678999999999999999987 566778899999999999999765 5566666 999999999999
Q ss_pred ceeeeecccCcceEEEEecc-CCCEEEEeeCCCeEEEEeccCce-eeeeE--eecCCCeeEecCCCcEEEEee-CCeEEE
Q 023822 112 KYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEK-CQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRM 186 (276)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~-~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~ 186 (276)
+-..++.+....|.++.|+| .+..|+++...|.+.+||+|... +...+ |.+++.++.|+|++.+||+|+ |+.|+|
T Consensus 167 ~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vki 246 (839)
T KOG0269|consen 167 KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKI 246 (839)
T ss_pred cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEE
Confidence 98889988889999999999 46689999999999999999764 33333 778899999999999999998 999999
Q ss_pred EecccCCCCCeeeeeecCCCCCceEEEECCCCcE-EEEee--cCCcEEEEECCCCcE-EEEeecCCCCCCceEEEEECC-
Q 023822 187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL-MLLTT--MEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSP- 261 (276)
Q Consensus 187 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~--~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~s~- 261 (276)
||+...+..+..... ...++.++.|-|..++ ||+++ .|-.|+|||++..-. ...+. .|...++.++|..
T Consensus 247 Wd~t~~~~~~~~tIn---Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~---eH~~~vt~i~W~~~ 320 (839)
T KOG0269|consen 247 WDMTDSRAKPKHTIN---TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL---EHTDSVTGIAWDSG 320 (839)
T ss_pred EeccCCCccceeEEe---ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee---ccCccccceeccCC
Confidence 999976654433332 3468999999998755 55554 477899999875443 34555 5889999999965
Q ss_pred CCcEEEEecCCCCCC
Q 023822 262 EGMFVISGRVSPFSS 276 (276)
Q Consensus 262 ~g~~l~~~~~dg~vs 276 (276)
|-..|.+++.||+|.
T Consensus 321 d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 321 DRINLWSCSKDGTVL 335 (839)
T ss_pred CceeeEeecCccHHH
Confidence 557899999999873
No 112
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=8.1e-27 Score=177.66 Aligned_cols=211 Identities=15% Similarity=0.207 Sum_probs=170.6
Q ss_pred ccccceeeccCCCcEEEEEEcCC-CCEEEEeecCCeEEEEEccCCe-------eeeeeeeeeeceEEEEEeccCC-eEEE
Q 023822 23 SMEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAAT-------CLKTINSKKYGVDLVCFTSHPT-TVIY 93 (276)
Q Consensus 23 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~-~l~~ 93 (276)
...+...|.+|.+.-+.++|++. .-.|++++.|++|++||+.... +...+.+|...|..++|++... .+.+
T Consensus 166 ~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~s 245 (422)
T KOG0264|consen 166 ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGS 245 (422)
T ss_pred cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhhee
Confidence 44566689999998899999984 4478999999999999997432 3456789999999999999654 5566
Q ss_pred eccCCCCCceEEEEcc--CCceeeeecccCcceEEEEeccC-CCEEEEeeCCCeEEEEeccCcee-eeeE--eecCCCee
Q 023822 94 SSKNGWDESLRLLSLH--DNKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKC-QGLL--RVQGRPAA 167 (276)
Q Consensus 94 ~~~~~~d~~i~~~d~~--~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~-~~~~--~~~~~~~~ 167 (276)
++. |+.+.|||++ +.++.....+|.+.|.|++|+|- +..||+|+.|++|.+||+|+... +..+ +...+..+
T Consensus 246 v~d---d~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V 322 (422)
T KOG0264|consen 246 VGD---DGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQV 322 (422)
T ss_pred ecC---CCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEE
Confidence 666 9999999999 56677788899999999999995 55899999999999999998644 3444 66678899
Q ss_pred EecCCC-cEEEEee-CCeEEEEecccCCC----------CCeeeeeecCCCCCceEEEECCCCcE-EEEeecCCcEEEEE
Q 023822 168 AYDDQG-LVFAVAF-GGYIRMFDARKYEK----------GPFDIFSVGGDISDANVVKFSNDGRL-MLLTTMEGHIHVLD 234 (276)
Q Consensus 168 ~~~~~~-~~l~~~~-d~~i~~~d~~~~~~----------~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~d 234 (276)
.|+|.. .+|+++. |+.+.+||+..-.. ++-.++...+|...|..+.|+|+..+ +++.+.|+.+.||.
T Consensus 323 ~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 323 EWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred EeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 999987 4555555 99999999975332 23335777899999999999998765 66788999999999
Q ss_pred CC
Q 023822 235 SF 236 (276)
Q Consensus 235 ~~ 236 (276)
+.
T Consensus 403 ~s 404 (422)
T KOG0264|consen 403 MA 404 (422)
T ss_pred cc
Confidence 75
No 113
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=9.2e-25 Score=171.09 Aligned_cols=240 Identities=15% Similarity=0.204 Sum_probs=176.4
Q ss_pred ccceeeccCCCcEEEEEEcCCCCEE-EEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822 25 EVGMSFRDYNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (276)
Q Consensus 25 ~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i 103 (276)
+....+..|.. +.+++|+|+++.+ ++++.++.|++||..+++....+..+. .+..++|+|+++.+++++.. ++.|
T Consensus 22 ~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~--~~~l 97 (300)
T TIGR03866 22 EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANED--DNLV 97 (300)
T ss_pred ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCC--CCeE
Confidence 34555665543 6789999999876 566788999999999988877666543 35678999999988766432 7899
Q ss_pred EEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCC-eEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-
Q 023822 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-TVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF- 180 (276)
Q Consensus 104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~- 180 (276)
++||+.+.+.+..+.. ...+.+++|+|++++++++..++ .+.+||.++.+..... .......+.|+|+++.++++.
T Consensus 98 ~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 98 TVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcC
Confidence 9999998877776653 34468899999999999888765 5677899887766544 333456789999998775443
Q ss_pred -CCeEEEEecccCCCCCeeeeeecC-----CCCCceEEEECCCCcEEEEe-ecCCcEEEEECCCCcEEEEeecCCCCCCc
Q 023822 181 -GGYIRMFDARKYEKGPFDIFSVGG-----DISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKPVSRNS 253 (276)
Q Consensus 181 -d~~i~~~d~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 253 (276)
++.|++||+++.+... ...... .......++|+|++++++++ +.++.+.+||..+++.+..+. +...
T Consensus 177 ~~~~v~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~----~~~~ 250 (300)
T TIGR03866 177 IGGTVSVIDVATRKVIK--KITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL----VGQR 250 (300)
T ss_pred CCCEEEEEEcCcceeee--eeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE----eCCC
Confidence 8999999998765311 111111 11134568999999986554 456789999999988876654 3457
Q ss_pred eEEEEECCCCcEEEEec-CCCCC
Q 023822 254 TLEASFSPEGMFVISGR-VSPFS 275 (276)
Q Consensus 254 v~~~~~s~~g~~l~~~~-~dg~v 275 (276)
+.+++|+|+|++|++++ .+|.+
T Consensus 251 ~~~~~~~~~g~~l~~~~~~~~~i 273 (300)
T TIGR03866 251 VWQLAFTPDEKYLLTTNGVSNDV 273 (300)
T ss_pred cceEEECCCCCEEEEEcCCCCeE
Confidence 88999999999998864 46654
No 114
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=1.9e-26 Score=172.11 Aligned_cols=242 Identities=15% Similarity=0.212 Sum_probs=185.8
Q ss_pred eeeccCCCcEEEEEEcCCC--CEEEEeecCCeEEEEEccC----------------CeeeeeeeeeeeceEEEEEeccCC
Q 023822 28 MSFRDYNGRISSMDFHKSS--SYLVTASDDESIRLYDVTA----------------ATCLKTINSKKYGVDLVCFTSHPT 89 (276)
Q Consensus 28 ~~~~~h~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~ 89 (276)
...-.|.+.++.+.-++-+ .+.|+-+..|.|.||++.. .+++.++.+|...-..+.|+|-..
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 3445688888888887754 4666777899999999742 356778888998899999999443
Q ss_pred -eEEEeccCCCCCceEEEEccCCce---eeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE----e
Q 023822 90 -TVIYSSKNGWDESLRLLSLHDNKY---LRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL----R 160 (276)
Q Consensus 90 -~l~~~~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~----~ 160 (276)
.+++|.. -+.|++|...++.- ...+.+|...|-.++|+|..+ .|++|+-||+|+|||+|.+.....+ +
T Consensus 225 g~LlsGDc---~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh 301 (440)
T KOG0302|consen 225 GRLLSGDC---VKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAH 301 (440)
T ss_pred cccccCcc---ccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeecc
Confidence 4777766 78999999888753 234567999999999999654 8999999999999999988433222 6
Q ss_pred ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcEEEEECCCC
Q 023822 161 VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRG 238 (276)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~ 238 (276)
...++.+.|+..-.+|++|. ||++++||+|+.+.. ..+..+..|..+|+++.|+|.. ..|++++.|..|.+||+.-.
T Consensus 302 ~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 302 NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG-QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred CCceeeEEccCCcceeeecCCCceEEEEEhhhccCC-CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 66789999999888888888 799999999987754 3456677899999999999964 67888899999999998521
Q ss_pred cE----------------EEEeecCCCCCCceEEEEECCCC-cEEEEecCCCC
Q 023822 239 TL----------------LSTYNVKPVSRNSTLEASFSPEG-MFVISGRVSPF 274 (276)
Q Consensus 239 ~~----------------~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~ 274 (276)
.- .+.+-.| .....+..+.|++.- -+|++.+.||+
T Consensus 381 ~D~ee~~~~a~~~L~dlPpQLLFVH-qGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 381 ADEEEIDQEAAEGLQDLPPQLLFVH-QGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred CChhhhccccccchhcCCceeEEEe-cchhHhhhheeccCCCCeEEEecccce
Confidence 11 0111111 134567888999865 47888888886
No 115
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.8e-26 Score=167.65 Aligned_cols=231 Identities=15% Similarity=0.243 Sum_probs=182.8
Q ss_pred EEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeee
Q 023822 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY 116 (276)
Q Consensus 37 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~ 116 (276)
-.|+.|++.|.+||+|+.||.|.|||+.+....+.+.+|-.+|++++|+++|+.|++++. |..|.+||+..+.+++.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~---D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR---DWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC---CceeEEEeccCCCceeE
Confidence 689999999999999999999999999999988999999999999999999999999999 99999999998876655
Q ss_pred ecccCcceE-----------------------------------------------EEEeccCCCEEEEeeCCCeEEEEe
Q 023822 117 FKGHHDRVV-----------------------------------------------SLSLCSSKDCFISGSLDRTVLLWD 149 (276)
Q Consensus 117 ~~~~~~~i~-----------------------------------------------~~~~~~~~~~l~~~~~d~~i~iwd 149 (276)
+. ..++|+ +..|.+.|+++++|...|.+.++|
T Consensus 103 ir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 103 IR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD 181 (405)
T ss_pred EE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence 43 111111 123555678999999999999999
Q ss_pred ccCceeeeeEee---cCCCeeEecCCCcEEEEee-CCeEEEEecccCCCC-----Ceeeeee--cCCCCCceEEEECCCC
Q 023822 150 QRAEKCQGLLRV---QGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKG-----PFDIFSV--GGDISDANVVKFSNDG 218 (276)
Q Consensus 150 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~-----~~~~~~~--~~~~~~i~~~~~~~~~ 218 (276)
..+.+++..++. ..+..+.++..|+.++..+ |+.|+.|+++.-... +.....+ --...+-.+++|+.+|
T Consensus 182 a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg 261 (405)
T KOG1273|consen 182 AETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG 261 (405)
T ss_pred cchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence 999999888743 4577889999998888777 999999998742110 0000111 1122355779999999
Q ss_pred cEEEEeecC-CcEEEEECCCCcEEEEeecCCCCC-CceEEEEECCCCcEEEEecCCCCC
Q 023822 219 RLMLLTTME-GHIHVLDSFRGTLLSTYNVKPVSR-NSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 219 ~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
.|+++++.. ..++||....|.+++.+. |.+ ....++.|+|-...+++- ..|.|
T Consensus 262 eYv~a~s~~aHaLYIWE~~~GsLVKILh---G~kgE~l~DV~whp~rp~i~si-~sg~v 316 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIWEKSIGSLVKILH---GTKGEELLDVNWHPVRPIIASI-ASGVV 316 (405)
T ss_pred cEEEeccccceeEEEEecCCcceeeeec---CCchhheeecccccceeeeeec-cCCce
Confidence 999888743 569999999999999998 555 567889999988877776 55554
No 116
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7.4e-26 Score=172.96 Aligned_cols=239 Identities=17% Similarity=0.308 Sum_probs=191.6
Q ss_pred CCcEEEEEEcCCCCEEEEeecCCeEEEEEccC--CeeeeeeeeeeeceEEEEEeccCC-eEEEeccCCCCCceEEEEccC
Q 023822 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTA--ATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHD 110 (276)
Q Consensus 34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~~~d~~~ 110 (276)
.++|+++.|+|....|++++.|++++||.++. ...++.+.....+|.+.+|.|+|. .+++++. ...++.||+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r---rky~ysyDle~ 289 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR---RKYLYSYDLET 289 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEeccc---ceEEEEeeccc
Confidence 47899999999999999999999999998863 345666666778999999999999 7777777 88999999987
Q ss_pred Cceee-------------e-----------ecc--------------------cCcceEEEEeccCCCEEEEeeCCCeEE
Q 023822 111 NKYLR-------------Y-----------FKG--------------------HHDRVVSLSLCSSKDCFISGSLDRTVL 146 (276)
Q Consensus 111 ~~~~~-------------~-----------~~~--------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~ 146 (276)
.+... . +.+ -.+.|..++|+.+++.|++++.+|.|.
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEE
Confidence 54211 1 111 134578899999999999999999999
Q ss_pred EEeccCceeeeeEeec-CC--CeeEecCCCcEEEEee-CCeEEEEecccCC--CCCeeeeeecCCCCCceEEEECCCCcE
Q 023822 147 LWDQRAEKCQGLLRVQ-GR--PAAAYDDQGLVFAVAF-GGYIRMFDARKYE--KGPFDIFSVGGDISDANVVKFSNDGRL 220 (276)
Q Consensus 147 iwd~~~~~~~~~~~~~-~~--~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~ 220 (276)
+||++...+++.+... .+ ..++.++++.++|+|+ .|.|.|||..+.. ..|..+..+..-...|++++|+|+++.
T Consensus 370 v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qi 449 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQI 449 (514)
T ss_pred EEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhh
Confidence 9999999999888433 33 3678889999999999 5999999965432 223345555566678999999999999
Q ss_pred EEEeec--CCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 221 MLLTTM--EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 221 l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
||.+|. +..+++-.+.+......+......-+.|++++|||.|-+||.|.++|-|
T Consensus 450 LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv 506 (514)
T KOG2055|consen 450 LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRV 506 (514)
T ss_pred hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCce
Confidence 988874 6789999998888777776443455779999999999999999998865
No 117
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=9.7e-26 Score=185.20 Aligned_cols=227 Identities=15% Similarity=0.200 Sum_probs=187.7
Q ss_pred CCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc
Q 023822 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 112 (276)
Q Consensus 33 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~ 112 (276)
+...|.+++.. +++|++|+.+++|.+|.+.+++.-..+....-++.+++++.+|++++.|+. |-.|++.+..+..
T Consensus 55 ~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsd---D~~vK~~~~~D~s 129 (933)
T KOG1274|consen 55 SGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSD---DTAVKLLNLDDSS 129 (933)
T ss_pred cCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecC---ceeEEEEeccccc
Confidence 67778777765 459999999999999999988877677777789999999999999999998 9999999999999
Q ss_pred eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe----------ecCCCeeEecCC-CcEEEEeeC
Q 023822 113 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR----------VQGRPAAAYDDQ-GLVFAVAFG 181 (276)
Q Consensus 113 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----------~~~~~~~~~~~~-~~~l~~~~d 181 (276)
....+++|.++|.++.|+|++++||+.+-||.|++||+.++.+...+. ......++|+|+ |.+++.+.|
T Consensus 130 ~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d 209 (933)
T KOG1274|consen 130 QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD 209 (933)
T ss_pred hheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC
Confidence 999999999999999999999999999999999999999988776661 112346899999 577777789
Q ss_pred CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECC
Q 023822 182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP 261 (276)
Q Consensus 182 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~ 261 (276)
+.|++|+....... .......+...+..++|+|+|+|||+++.||.|.|||.++-.. . .....|.+++|.|
T Consensus 210 ~~Vkvy~r~~we~~--f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~---~~~~~Vc~~aw~p 280 (933)
T KOG1274|consen 210 NTVKVYSRKGWELQ--FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----H---EFKRAVCCEAWKP 280 (933)
T ss_pred CeEEEEccCCceeh--eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----c---cccceeEEEecCC
Confidence 99999999887641 1222233444599999999999999999999999999987222 1 2567899999999
Q ss_pred CCcEEEEecCCC
Q 023822 262 EGMFVISGRVSP 273 (276)
Q Consensus 262 ~g~~l~~~~~dg 273 (276)
++..+-.-...|
T Consensus 281 ~~n~it~~~~~g 292 (933)
T KOG1274|consen 281 NANAITLITALG 292 (933)
T ss_pred CCCeeEEEeecc
Confidence 987654443333
No 118
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=2.9e-26 Score=183.03 Aligned_cols=238 Identities=15% Similarity=0.216 Sum_probs=197.8
Q ss_pred hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeee--eeeeeeeeceEE-EEEec-cCCeEEEeccC
Q 023822 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL--KTINSKKYGVDL-VCFTS-HPTTVIYSSKN 97 (276)
Q Consensus 22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~v~~-~~~~~-~~~~l~~~~~~ 97 (276)
..++..+.+.+|+..|..+++.+. ..++++|+||++++|+-...+.+ ..+..|.+-+.. +++.+ ++-.+++++.
T Consensus 2 ~~Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~- 79 (745)
T KOG0301|consen 2 PQYKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGM- 79 (745)
T ss_pred CcceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecc-
Confidence 346677889999999999988764 48999999999999997655433 335556655555 67765 4456888888
Q ss_pred CCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEE
Q 023822 98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFA 177 (276)
Q Consensus 98 ~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 177 (276)
|..|.+|...+..+...+++|...|.+++...++. +++|+.|.++++|-.........-|...+..++.-|++.+++
T Consensus 80 --D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~~~vT 156 (745)
T KOG0301|consen 80 --DTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPENTYVT 156 (745)
T ss_pred --cceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcccCCcchheeeeeecCCCcEEe
Confidence 99999999999999999999999999999877776 999999999999986654433333666778888999998888
Q ss_pred EeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEE
Q 023822 178 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 257 (276)
Q Consensus 178 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 257 (276)
++.|.+|++|.-.+ . ...+.+|...|..+++-|++. +++++.||.|++|++ +|+.+.++. +|...|.++
T Consensus 157 gsaDKtIklWk~~~--~----l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~---ghtn~vYsi 225 (745)
T KOG0301|consen 157 GSADKTIKLWKGGT--L----LKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMH---GHTNFVYSI 225 (745)
T ss_pred ccCcceeeeccCCc--h----hhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeee---ccceEEEEE
Confidence 88899999998643 2 556778999999999998865 789999999999998 888988888 899999999
Q ss_pred EECCCCcEEEEecCCCCC
Q 023822 258 SFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 258 ~~s~~g~~l~~~~~dg~v 275 (276)
+..+++..++++++|+++
T Consensus 226 s~~~~~~~Ivs~gEDrtl 243 (745)
T KOG0301|consen 226 SMALSDGLIVSTGEDRTL 243 (745)
T ss_pred EecCCCCeEEEecCCceE
Confidence 988899999999999985
No 119
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=4.8e-25 Score=179.46 Aligned_cols=246 Identities=15% Similarity=0.247 Sum_probs=196.7
Q ss_pred hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101 (276)
Q Consensus 22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~ 101 (276)
++-+.+.+++++...|+++.-+|-=..+|.|..+|+|.+++++.++.+..++...++|+.++|.-||..+++.+.. .|
T Consensus 190 rt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~--~G 267 (910)
T KOG1539|consen 190 RTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRS--NG 267 (910)
T ss_pred ccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccC--Cc
Confidence 3456778899999999999999988899999999999999999999999998877999999999999877666552 68
Q ss_pred ceEEEEccCCceeeeec-c-------------------------------------------------------------
Q 023822 102 SLRLLSLHDNKYLRYFK-G------------------------------------------------------------- 119 (276)
Q Consensus 102 ~i~~~d~~~~~~~~~~~-~------------------------------------------------------------- 119 (276)
.+.+||++..+....+. .
T Consensus 268 ~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g 347 (910)
T KOG1539|consen 268 DMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQG 347 (910)
T ss_pred eEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCc
Confidence 89999887532111100 0
Q ss_pred --------------------------------------------------------------------------------
Q 023822 120 -------------------------------------------------------------------------------- 119 (276)
Q Consensus 120 -------------------------------------------------------------------------------- 119 (276)
T Consensus 348 ~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW 427 (910)
T KOG1539|consen 348 HFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTW 427 (910)
T ss_pred EEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEE
Confidence
Q ss_pred -------------cC------cceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-----eecCCCeeEecCCCcE
Q 023822 120 -------------HH------DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-----RVQGRPAAAYDDQGLV 175 (276)
Q Consensus 120 -------------~~------~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 175 (276)
+. ..+++++.++-|++.+.|...|.|-+|++.++-....+ +..++..++.+.-++.
T Consensus 428 ~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~ 507 (910)
T KOG1539|consen 428 NFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRL 507 (910)
T ss_pred eccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCce
Confidence 11 23566777777777777888888888888887766666 4556778888888877
Q ss_pred EEEee-CCeEEEEecccCCCC---------C-----------------e-----------eeeeecCCCCCceEEEECCC
Q 023822 176 FAVAF-GGYIRMFDARKYEKG---------P-----------------F-----------DIFSVGGDISDANVVKFSND 217 (276)
Q Consensus 176 l~~~~-d~~i~~~d~~~~~~~---------~-----------------~-----------~~~~~~~~~~~i~~~~~~~~ 217 (276)
+++++ +|.+.+||....... . + ....+.+|...|++++||||
T Consensus 508 ~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D 587 (910)
T KOG1539|consen 508 LVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD 587 (910)
T ss_pred EEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCC
Confidence 77666 999999998764310 0 0 01234568899999999999
Q ss_pred CcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822 218 GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP 273 (276)
Q Consensus 218 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 273 (276)
|++|++++.|++|++||+.++.++..+. ...++.++.|+|+|.+||+...|.
T Consensus 588 grWlisasmD~tIr~wDlpt~~lID~~~----vd~~~~sls~SPngD~LAT~Hvd~ 639 (910)
T KOG1539|consen 588 GRWLISASMDSTIRTWDLPTGTLIDGLL----VDSPCTSLSFSPNGDFLATVHVDQ 639 (910)
T ss_pred CcEEEEeecCCcEEEEeccCcceeeeEe----cCCcceeeEECCCCCEEEEEEecC
Confidence 9999999999999999999999999987 678999999999999999998774
No 120
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.2e-27 Score=189.94 Aligned_cols=211 Identities=14% Similarity=0.225 Sum_probs=172.6
Q ss_pred ccceeeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEecc-CCeEEEeccCCCCCc
Q 023822 25 EVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDES 102 (276)
Q Consensus 25 ~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~ 102 (276)
+....|..|...++++.|++ ..++|++|+.||+|++||+...+...++.+....|.++.|+|. +..++++.. .|.
T Consensus 124 k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~d---sG~ 200 (839)
T KOG0269|consen 124 KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHD---SGY 200 (839)
T ss_pred hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecC---Cce
Confidence 33456889999999999998 5678999999999999999998888888888889999999995 456667766 899
Q ss_pred eEEEEccCC-ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee--eE-eecCCCeeEecCCCc-EEE
Q 023822 103 LRLLSLHDN-KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG--LL-RVQGRPAAAYDDQGL-VFA 177 (276)
Q Consensus 103 i~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~-~~~~~~~~~~~~~~~-~l~ 177 (276)
+++||++.. ++...+..|.++|.|+.|+|++.+||+|++|++|+|||+.+.+... ++ ...++..+.|-|... .|+
T Consensus 201 lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLA 280 (839)
T KOG0269|consen 201 LQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLA 280 (839)
T ss_pred EEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhh
Confidence 999999876 4566788999999999999999999999999999999998665433 33 455677999999774 444
Q ss_pred Eee---CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECC-CCcEEEEeecCCcEEEEECCCCcEE
Q 023822 178 VAF---GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLL 241 (276)
Q Consensus 178 ~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~ 241 (276)
+++ |-.|+|||++..- +....+..|...++.++|.. +-..|.+++.||.|..-.++++...
T Consensus 281 tcsmv~dtsV~VWDvrRPY---IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~p 345 (839)
T KOG0269|consen 281 TCSMVVDTSVHVWDVRRPY---IPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATTP 345 (839)
T ss_pred hhhccccceEEEEeecccc---ccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccCh
Confidence 444 8999999999643 34566778989999999976 4467889999998877666655443
No 121
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.9e-25 Score=176.92 Aligned_cols=236 Identities=15% Similarity=0.170 Sum_probs=191.6
Q ss_pred cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCee-eeeeeee-eeceEEEEEeccCCeEEEeccCCCCCceEEEEcc
Q 023822 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC-LKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH 109 (276)
Q Consensus 32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~ 109 (276)
--..+|.++||+.+.+.||.+-.||.|-+|++..+-. ...+.++ +..|..++|++.+ .|++.+. +|.|.-||+.
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~---sg~i~EwDl~ 98 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGL---SGSITEWDLH 98 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecC---CceEEEEecc
Confidence 3468899999999999999999999999999987533 3334443 4679999999554 5555555 9999999999
Q ss_pred CCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE----eecCCCeeEecCCCcEEEEee-CCeE
Q 023822 110 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL----RVQGRPAAAYDDQGLVFAVAF-GGYI 184 (276)
Q Consensus 110 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~-d~~i 184 (276)
+.++...+....+.|++++.+|.+..++.|+.||.+..++...++..... ....+-++.|+|++..+++|+ ||.|
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~I 178 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVI 178 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceE
Confidence 99999999999999999999999999999999998888887777665544 335677999999999777777 9999
Q ss_pred EEEecccCCCCCeeeeeecC----CCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEEC
Q 023822 185 RMFDARKYEKGPFDIFSVGG----DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS 260 (276)
Q Consensus 185 ~~~d~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s 260 (276)
++||...+.........+.. ...-|.++.|-.++ .|++|...|.|.+||...+.+++.+. .|.+.|.+++-.
T Consensus 179 riwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~---~h~adVl~Lav~ 254 (691)
T KOG2048|consen 179 RIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHS---CHDADVLALAVA 254 (691)
T ss_pred EEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhh---hhhcceeEEEEc
Confidence 99999986642211111111 23346777777665 58999999999999999999999998 689999999999
Q ss_pred CCCcEEEEecCCCCC
Q 023822 261 PEGMFVISGRVSPFS 275 (276)
Q Consensus 261 ~~g~~l~~~~~dg~v 275 (276)
+++.++++++.|+.+
T Consensus 255 ~~~d~vfsaGvd~~i 269 (691)
T KOG2048|consen 255 DNEDRVFSAGVDPKI 269 (691)
T ss_pred CCCCeEEEccCCCce
Confidence 999999999999865
No 122
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=9.3e-28 Score=192.38 Aligned_cols=196 Identities=20% Similarity=0.291 Sum_probs=177.0
Q ss_pred cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822 26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 105 (276)
Q Consensus 26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~ 105 (276)
....|.+|..+|.|+.|+++..+|++|+.+|+|++||++.++.++++.+|...+..+.|+|-+.+.+.++. |..+++
T Consensus 62 ~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gSt---dtd~~i 138 (825)
T KOG0267|consen 62 AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGST---DTDLKI 138 (825)
T ss_pred hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccc---ccccee
Confidence 33458999999999999999999999999999999999999999999999999999999999999988888 999999
Q ss_pred EEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CC
Q 023822 106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GG 182 (276)
Q Consensus 106 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~ 182 (276)
||++...+...+.+|...+..+.|+|+|++++.++.|..+++||+..++....+ |...+..+.|+|..-+++.++ |+
T Consensus 139 wD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~ 218 (825)
T KOG0267|consen 139 WDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDR 218 (825)
T ss_pred hhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCc
Confidence 999988899999999999999999999999999999999999999999999888 556677888999999998888 99
Q ss_pred eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC
Q 023822 183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG 228 (276)
Q Consensus 183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 228 (276)
++++||+++.+. +.........|.+.+|+|++..+++|....
T Consensus 219 tv~f~dletfe~----I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 219 TVRFWDLETFEV----ISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeeeeccceeEE----eeccCCccCCceeeeecCCceeeecCchhh
Confidence 999999997553 444455567899999999999888876543
No 123
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=9.2e-26 Score=177.66 Aligned_cols=244 Identities=15% Similarity=0.238 Sum_probs=179.0
Q ss_pred ceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCC-----------------
Q 023822 27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT----------------- 89 (276)
Q Consensus 27 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------- 89 (276)
...++||++.|.|+...|.|.+|++|+.||+|+||.+.+|+++..+... +.|.+++|+|.+.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 4557899999999999999999999999999999999999988876543 3566666666544
Q ss_pred ---------------------------------------------------------------eEEEeccCCCCCceEEE
Q 023822 90 ---------------------------------------------------------------TVIYSSKNGWDESLRLL 106 (276)
Q Consensus 90 ---------------------------------------------------------------~l~~~~~~~~d~~i~~~ 106 (276)
+|++....+....|.|+
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 22222221112233333
Q ss_pred EccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCe
Q 023822 107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGY 183 (276)
Q Consensus 107 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~ 183 (276)
++...+....|+...+.|.++.|+|...+|++++. ..|++||+.....++.+ ....+..++++|.|.-+++++ |+.
T Consensus 552 QLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k 630 (733)
T KOG0650|consen 552 QLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK 630 (733)
T ss_pred ecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe
Confidence 33333323333344567899999999999888885 57999999988877776 334477899999886555555 999
Q ss_pred EEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC------CCcEEEEeecCCCCCCc----
Q 023822 184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF------RGTLLSTYNVKPVSRNS---- 253 (276)
Q Consensus 184 i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~------~~~~~~~~~~~~~~~~~---- 253 (276)
+..||+.-..+ + ...+..|...+++++|++.-.++++|+.||.+.|+.-. ..-++-.++..++|...
T Consensus 631 ~~WfDldlssk-P--yk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~g 707 (733)
T KOG0650|consen 631 MCWFDLDLSSK-P--YKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLG 707 (733)
T ss_pred eEEEEcccCcc-h--hHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccc
Confidence 99999986543 2 44556788899999999999999999999999998522 22222222222256554
Q ss_pred eEEEEECCCCcEEEEecCCCCC
Q 023822 254 TLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 254 v~~~~~s~~g~~l~~~~~dg~v 275 (276)
|.++.|+|...+|++++.||++
T Consensus 708 VLd~~wHP~qpWLfsAGAd~ti 729 (733)
T KOG0650|consen 708 VLDTIWHPRQPWLFSAGADGTI 729 (733)
T ss_pred eEeecccCCCceEEecCCCceE
Confidence 8899999999999999999985
No 124
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=2.8e-25 Score=161.20 Aligned_cols=207 Identities=21% Similarity=0.291 Sum_probs=166.1
Q ss_pred eccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCe----------eee-----eeeeeeeceEEEEEeccCCeEEE
Q 023822 30 FRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAAT----------CLK-----TINSKKYGVDLVCFTSHPTTVIY 93 (276)
Q Consensus 30 ~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~----------~~~-----~~~~~~~~v~~~~~~~~~~~l~~ 93 (276)
.+.|.+.|+++...+ .|+++++|+.||.|.+||+++.. .+. .-..|+..|..+.|-|-..-+++
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 356899999999988 78999999999999999997542 011 11357788999999996665555
Q ss_pred eccCCCCCceEEEEccCCceeeeecccCcceEEEEeccC---CCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeE
Q 023822 94 SSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS---KDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAA 168 (276)
Q Consensus 94 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~ 168 (276)
.+. +|.++++||.++-+....++ -++.|.+-+++|- ..++|+|..|-.|++.|+.++...+.+ |..++..+.
T Consensus 119 ssS--FDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 119 SSS--FDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred ccc--ccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 543 39999999999988877776 5677888888883 347888999999999999999999998 667788999
Q ss_pred ecCCCcEE-EEee-CCeEEEEecccCC------------CCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEE
Q 023822 169 YDDQGLVF-AVAF-GGYIRMFDARKYE------------KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234 (276)
Q Consensus 169 ~~~~~~~l-~~~~-d~~i~~~d~~~~~------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 234 (276)
|+|...++ ++++ ||.|++||++... ..+. ......|.+.++.++|+.+|.++++.+.|..+++|+
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~-~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPI-LKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcc-ccccccccceeeeeeecccchhhhhccCccceEEee
Confidence 99988654 4444 9999999998642 1111 123456778899999999999999999999999999
Q ss_pred CCCCcE
Q 023822 235 SFRGTL 240 (276)
Q Consensus 235 ~~~~~~ 240 (276)
..+|+.
T Consensus 275 ~~~G~n 280 (397)
T KOG4283|consen 275 MESGRN 280 (397)
T ss_pred cccCcc
Confidence 887653
No 125
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=5.3e-26 Score=175.81 Aligned_cols=230 Identities=10% Similarity=0.166 Sum_probs=187.9
Q ss_pred cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC---eeeeeeee--eeeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA---TCLKTINS--KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 106 (276)
Q Consensus 32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~ 106 (276)
.|..-|.++..+...+.++||+. |.|+|||+... .++..+.. ....+..+...||++.|++++. -.++.||
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGe---astlsiW 492 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE---ASTLSIW 492 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccc---cceeeee
Confidence 58888889999998999999986 78999999743 23333433 3467999999999999999998 8999999
Q ss_pred EccCCcee--eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-C
Q 023822 107 SLHDNKYL--RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-G 181 (276)
Q Consensus 107 d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d 181 (276)
|+....+. ..+....-....++.+||.+..+++..||.|.|||+.+...++.+ +..+..|+.++++|..|-+|. |
T Consensus 493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCc
Confidence 99876543 233333345778999999999999999999999999999999998 677899999999998777777 9
Q ss_pred CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECC
Q 023822 182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP 261 (276)
Q Consensus 182 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~ 261 (276)
++++.||++.++.... + .-.+.|.++..+|++.+|++|-+++.+.|.... +.....+. .|++-|.++.|.+
T Consensus 573 ntvRcWDlregrqlqq--h---dF~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlh---lheScVLSlKFa~ 643 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQ--H---DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLH---LHESCVLSLKFAY 643 (705)
T ss_pred cceeehhhhhhhhhhh--h---hhhhhheecccCCCccceeeecccCcEEEEecC-Cccceeec---ccccEEEEEEecc
Confidence 9999999998764211 1 123578999999999999999999999998864 44444444 4899999999999
Q ss_pred CCcEEEEecCCCC
Q 023822 262 EGMFVISGRVSPF 274 (276)
Q Consensus 262 ~g~~l~~~~~dg~ 274 (276)
.|+++++.+.|.+
T Consensus 644 cGkwfvStGkDnl 656 (705)
T KOG0639|consen 644 CGKWFVSTGKDNL 656 (705)
T ss_pred cCceeeecCchhh
Confidence 9999999999875
No 126
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1.9e-24 Score=167.19 Aligned_cols=223 Identities=19% Similarity=0.285 Sum_probs=178.5
Q ss_pred CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc--
Q 023822 35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK-- 112 (276)
Q Consensus 35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~-- 112 (276)
.-|.|++|.++|+ ++||..+|.|.||+..+.+..+....|++.|.+++...+|..+- ++. |+.|..||-.-.+
T Consensus 247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgK---DRki~~Wd~~y~k~r 321 (626)
T KOG2106|consen 247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGK---DRKIILWDDNYRKLR 321 (626)
T ss_pred eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCc---cceEEeccccccccc
Confidence 5699999999886 77999999999999988888877779999999999998887665 777 9999999832110
Q ss_pred ---------e-----------------------------eeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce
Q 023822 113 ---------Y-----------------------------LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK 154 (276)
Q Consensus 113 ---------~-----------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 154 (276)
. .....+|......++.+|+.+++++++.|+.+++|+ ..+
T Consensus 322 ~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k 399 (626)
T KOG2106|consen 322 ETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK 399 (626)
T ss_pred cccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCc
Confidence 0 011246777889999999999999999999999999 333
Q ss_pred eee-eEeecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEE
Q 023822 155 CQG-LLRVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV 232 (276)
Q Consensus 155 ~~~-~~~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 232 (276)
+.- .+-..+..++.|+|.| .++.++ .|...+.|.++.. .........+++.++|+|+|.+||.|+.|+.|+|
T Consensus 400 ~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~-----lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyi 473 (626)
T KOG2106|consen 400 LEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD-----LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYI 473 (626)
T ss_pred eeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccce-----eEEEEecCCceEEEEEcCCCCEEEEecCCCeEEE
Confidence 333 3356677899999999 666666 8999999998833 3333334789999999999999999999999999
Q ss_pred EECCCC-cEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822 233 LDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS 272 (276)
Q Consensus 233 ~d~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 272 (276)
|.+... ......... +..+|+.+.||+|+++|.+-+.|
T Consensus 474 y~Vs~~g~~y~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d 512 (626)
T KOG2106|consen 474 YRVSANGRKYSRVGKC--SGSPITHLDWSSDSQFLVSNSGD 512 (626)
T ss_pred EEECCCCcEEEEeeee--cCceeEEeeecCCCceEEeccCc
Confidence 998654 444444433 34899999999999999987765
No 127
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.94 E-value=3.7e-25 Score=166.65 Aligned_cols=265 Identities=14% Similarity=0.175 Sum_probs=196.7
Q ss_pred cccCcccceeeeeehHHHh--hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEcc--------C-------
Q 023822 3 GSQSEREDKVSLELSEEIL--QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT--------A------- 65 (276)
Q Consensus 3 g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~--------~------- 65 (276)
|+.+.+...+.+...+... .+.+....|..|...|+++.|+|+|+.||+|+.+|.|.+|... +
T Consensus 32 ~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke 111 (434)
T KOG1009|consen 32 AGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKE 111 (434)
T ss_pred ccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCcc
Confidence 4445555555554443333 3667778899999999999999999999999999999999865 2
Q ss_pred -CeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCe
Q 023822 66 -ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT 144 (276)
Q Consensus 66 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 144 (276)
......+.+|...+..++|+|++.++++++. |..+++||+..+.....+..|...+..++|.|-++++++-+.|..
T Consensus 112 ~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~---dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~ 188 (434)
T KOG1009|consen 112 KWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSV---DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRH 188 (434)
T ss_pred ceEEEEEecccccchhhhhccCCCceeeeeec---cceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcc
Confidence 2234556778899999999999999999998 999999999999999999999999999999999999999998887
Q ss_pred EEEEeccCceeeeeE---------------------eecC----CCeeEecCCCcEEEEee-----CCe-----EEEEec
Q 023822 145 VLLWDQRAEKCQGLL---------------------RVQG----RPAAAYDDQGLVFAVAF-----GGY-----IRMFDA 189 (276)
Q Consensus 145 i~iwd~~~~~~~~~~---------------------~~~~----~~~~~~~~~~~~l~~~~-----d~~-----i~~~d~ 189 (276)
.+.+.+...+.++.. +... ...++|+|+|.+++... ++. .++|+-
T Consensus 189 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsr 268 (434)
T KOG1009|consen 189 PEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSR 268 (434)
T ss_pred cceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecc
Confidence 777766543322221 1111 12578889998887654 233 355554
Q ss_pred ccCCCCCeeeeeecCCCCCceEEEECC------------------CCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCC
Q 023822 190 RKYEKGPFDIFSVGGDISDANVVKFSN------------------DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251 (276)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~------------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 251 (276)
...+. ....++....+...+.|+| -+-.+|.++ .+.|++||.++-.++..... -|-
T Consensus 269 k~l~r---P~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~n--ihy 342 (434)
T KOG1009|consen 269 KDLKR---PAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDN--IHY 342 (434)
T ss_pred ccccC---ceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEee--eee
Confidence 43222 1333334444445555544 222344444 45799999999888887765 478
Q ss_pred CceEEEEECCCCcEEEEecCCCCCC
Q 023822 252 NSTLEASFSPEGMFVISGRVSPFSS 276 (276)
Q Consensus 252 ~~v~~~~~s~~g~~l~~~~~dg~vs 276 (276)
..+++++|++||..|+..|.||+.|
T Consensus 343 ~~iTDiaws~dg~~l~vSS~DGyCS 367 (434)
T KOG1009|consen 343 SAITDIAWSDDGSVLLVSSTDGFCS 367 (434)
T ss_pred eeecceeecCCCcEEEEeccCCceE
Confidence 8999999999999999999999865
No 128
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=5.4e-26 Score=182.58 Aligned_cols=236 Identities=12% Similarity=0.146 Sum_probs=196.3
Q ss_pred CCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEec---cCCeEEEeccCCCCCceEEEEcc
Q 023822 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS---HPTTVIYSSKNGWDESLRLLSLH 109 (276)
Q Consensus 33 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~~~~d~~i~~~d~~ 109 (276)
....+.+++.+|+|++||+|..-|+++||++.+-+....+..|+..|.|+.++. ..+.|++++. |..|.+||+.
T Consensus 458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr---dRlIHV~Dv~ 534 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASR---DRLIHVYDVK 534 (1080)
T ss_pred cccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccC---CceEEEEecc
Confidence 356799999999999999999999999999999999999999999999999985 3467888888 9999999986
Q ss_pred CC-ceeeeecccCcceEEEEeccCC--CEEEEeeCCCeEEEEeccCceeee-------eEeecCCCeeEecCCCcEEEEe
Q 023822 110 DN-KYLRYFKGHHDRVVSLSLCSSK--DCFISGSLDRTVLLWDQRAEKCQG-------LLRVQGRPAAAYDDQGLVFAVA 179 (276)
Q Consensus 110 ~~-~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~ 179 (276)
.. .+++++.+|...|+++.|...| ..+++++.|..|.+--.+...... ++.......++..|..++++++
T Consensus 535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~ 614 (1080)
T KOG1408|consen 535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV 614 (1080)
T ss_pred cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEE
Confidence 54 5678899999999999998877 588999999877543333111111 1123345688999998888777
Q ss_pred e-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEE
Q 023822 180 F-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 258 (276)
Q Consensus 180 ~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 258 (276)
. |..|++||+++++.... ......|.+....+...|.|.|+++...|.++.++|..+|+++.+.. +|...|+.+.
T Consensus 615 cQDrnirif~i~sgKq~k~-FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~---GHsE~VTG~k 690 (1080)
T KOG1408|consen 615 CQDRNIRIFDIESGKQVKS-FKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT---GHSEAVTGVK 690 (1080)
T ss_pred ecccceEEEeccccceeee-ecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc---Ccchheeeee
Confidence 7 99999999999875221 11233466778889999999999999999999999999999999999 8999999999
Q ss_pred ECCCCcEEEEecCCCCC
Q 023822 259 FSPEGMFVISGRVSPFS 275 (276)
Q Consensus 259 ~s~~g~~l~~~~~dg~v 275 (276)
|.+|-+.|++.+.||.+
T Consensus 691 F~nDCkHlISvsgDgCI 707 (1080)
T KOG1408|consen 691 FLNDCKHLISVSGDGCI 707 (1080)
T ss_pred ecccchhheeecCCceE
Confidence 99999999999999864
No 129
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.94 E-value=9.1e-25 Score=164.15 Aligned_cols=207 Identities=13% Similarity=0.206 Sum_probs=170.8
Q ss_pred eeeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCC-------eeeeeeeeeeeceEEEEEeccCC-eEEEeccCC
Q 023822 28 MSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNG 98 (276)
Q Consensus 28 ~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~ 98 (276)
-.+.||+++|..++|+| +.+.+|+||+|.+|.||.+..+ +++..+.+|...|..++|+|... .|++++.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~-- 152 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS-- 152 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC--
Confidence 34679999999999999 6778999999999999998754 45677889999999999999765 4566665
Q ss_pred CCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCCcE
Q 023822 99 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLV 175 (276)
Q Consensus 99 ~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~ 175 (276)
|..|.+|++.+++.+.++. |.+.|.++.|+.+|.+|++.+.|.+|++||.++++.+..- .......+.|-.++.+
T Consensus 153 -Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i 230 (472)
T KOG0303|consen 153 -DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKI 230 (472)
T ss_pred -CceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCce
Confidence 9999999999999988888 9999999999999999999999999999999999988776 2233456778888888
Q ss_pred EEEee----CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEe-ecCCcEEEEECCCCcE
Q 023822 176 FAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTL 240 (276)
Q Consensus 176 l~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~ 240 (276)
+++|. +.++.+||..+.+.+ .....+.. .+.|.---|.|+.+.++.+ -.|+.||-|.+.+..+
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP-~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEP-IALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred eeeccccccccceeccCcccccCc-ceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 88887 689999999887753 44444443 3456666688888877655 4799999999877653
No 130
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=5.4e-25 Score=174.44 Aligned_cols=243 Identities=18% Similarity=0.173 Sum_probs=178.0
Q ss_pred eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeee--eeeeeeceEEEEEeccCCe-EEEeccCCCCCceE
Q 023822 28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTT-VIYSSKNGWDESLR 104 (276)
Q Consensus 28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~-l~~~~~~~~d~~i~ 104 (276)
.....|...|..+.|-|-...|++++.|.++++||++..++... +.+|...|.+++|.|.+.. |++|+. ||.|.
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgR---Dg~il 170 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGR---DGEIL 170 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccC---CCcEE
Confidence 45668999999999999777899999999999999999988776 8899999999999997654 566666 99999
Q ss_pred EEEccCCc--------------------e-------eeeecccCcceEE---EEeccCCCEEEEeeC-CCeEEEEeccCc
Q 023822 105 LLSLHDNK--------------------Y-------LRYFKGHHDRVVS---LSLCSSKDCFISGSL-DRTVLLWDQRAE 153 (276)
Q Consensus 105 ~~d~~~~~--------------------~-------~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-d~~i~iwd~~~~ 153 (276)
|||++-.. + +...+.+...|.+ +.+..|...||+++. |+.|++||++..
T Consensus 171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~ 250 (720)
T KOG0321|consen 171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN 250 (720)
T ss_pred EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence 99986432 0 1112234444554 555568888999888 999999999976
Q ss_pred eeeeeE-------------eecCCCeeEecCCCcE-EEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCc
Q 023822 154 KCQGLL-------------RVQGRPAAAYDDQGLV-FAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219 (276)
Q Consensus 154 ~~~~~~-------------~~~~~~~~~~~~~~~~-l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 219 (276)
...... ...++.++..+..|.+ +|.+.|+.|++|++......+...+.-.........-..+|++.
T Consensus 251 ~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~ 330 (720)
T KOG0321|consen 251 YTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC 330 (720)
T ss_pred ccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc
Confidence 544332 1223446666666654 45555999999999987665544433221112222335789999
Q ss_pred EEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCC-cEEEEecCCCCC
Q 023822 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG-MFVISGRVSPFS 275 (276)
Q Consensus 220 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v 275 (276)
++++|+.|...++|.+.+.+.--.+.. +|.-.|+.++|.|.. .-++++++|-.+
T Consensus 331 ~l~SgSsd~~ayiw~vs~~e~~~~~l~--Ght~eVt~V~w~pS~~t~v~TcSdD~~~ 385 (720)
T KOG0321|consen 331 SLLSGSSDEQAYIWVVSSPEAPPALLL--GHTREVTTVRWLPSATTPVATCSDDFRV 385 (720)
T ss_pred eEeccCCCcceeeeeecCccCChhhhh--CcceEEEEEeeccccCCCceeeccCcce
Confidence 999999999999999987765433322 799999999998854 346677777553
No 131
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.6e-25 Score=155.09 Aligned_cols=209 Identities=13% Similarity=0.165 Sum_probs=166.2
Q ss_pred cccceeeccCCCcEEEEEEcC--CCCEEEEeecCCeEEEEEccCCe--eeeeeeeeeeceEEEEEeccC--CeEEEeccC
Q 023822 24 MEVGMSFRDYNGRISSMDFHK--SSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHP--TTVIYSSKN 97 (276)
Q Consensus 24 ~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~~ 97 (276)
.++..+|.||.+||..++|.. -|.+||+++.||.|.||.-++++ .......|...|++++|.|.+ -.|++++.
T Consensus 46 s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasS- 124 (299)
T KOG1332|consen 46 SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASS- 124 (299)
T ss_pred ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeC-
Confidence 467788999999999999965 89999999999999999988774 344567889999999999975 45667776
Q ss_pred CCCCceEEEEccCC---ceeeeecccCcceEEEEeccC---C-----------CEEEEeeCCCeEEEEeccCceee--ee
Q 023822 98 GWDESLRLLSLHDN---KYLRYFKGHHDRVVSLSLCSS---K-----------DCFISGSLDRTVLLWDQRAEKCQ--GL 158 (276)
Q Consensus 98 ~~d~~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~---~-----------~~l~~~~~d~~i~iwd~~~~~~~--~~ 158 (276)
||.|.+.+.+.. ........|.-.|++++|.|. | +.|++|+.|..|+||+..+.+-+ ..
T Consensus 125 --DG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~ 202 (299)
T KOG1332|consen 125 --DGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERT 202 (299)
T ss_pred --CCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhh
Confidence 999999998765 223455789999999999985 4 56999999999999999886322 22
Q ss_pred E--eecCCCeeEecCCC----cEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEE
Q 023822 159 L--RVQGRPAAAYDDQG----LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIH 231 (276)
Q Consensus 159 ~--~~~~~~~~~~~~~~----~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 231 (276)
+ |..-++.++|.|.- ..+++++ ||++.+|..+ .+..+.....+..-...+..+.||+.|+.|++++.|+.|.
T Consensus 203 l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~-~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvt 281 (299)
T KOG1332|consen 203 LEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD-EEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVT 281 (299)
T ss_pred hhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec-CccCcccccccccCCcceEEEEEeccccEEEEecCCcEEE
Confidence 3 56668899999864 4555555 9999999987 3333333344444566799999999999999999999999
Q ss_pred EEECC
Q 023822 232 VLDSF 236 (276)
Q Consensus 232 i~d~~ 236 (276)
+|.-.
T Consensus 282 lwke~ 286 (299)
T KOG1332|consen 282 LWKEN 286 (299)
T ss_pred EEEeC
Confidence 99743
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.4e-25 Score=167.65 Aligned_cols=219 Identities=15% Similarity=0.178 Sum_probs=173.1
Q ss_pred CEEEEee-cCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceE
Q 023822 47 SYLVTAS-DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV 125 (276)
Q Consensus 47 ~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~ 125 (276)
.+++++. .-..+.+|.+...........-.+++.+++-+|.|.+++.++. .+.|++|.+.+|+.+..+.+|-..|+
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i---~g~lYlWelssG~LL~v~~aHYQ~IT 127 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTI---SGNLYLWELSSGILLNVLSAHYQSIT 127 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecc---cCcEEEEEeccccHHHHHHhhcccee
Confidence 4565554 3457889998766555544455678999999999999999877 99999999999999999999999999
Q ss_pred EEEeccCCCEEEEeeCCCeEEEEecc---------CceeeeeEeec--CCCeeEecC---CCcEEEEeeCCeEEEEeccc
Q 023822 126 SLSLCSSKDCFISGSLDRTVLLWDQR---------AEKCQGLLRVQ--GRPAAAYDD---QGLVFAVAFGGYIRMFDARK 191 (276)
Q Consensus 126 ~~~~~~~~~~l~~~~~d~~i~iwd~~---------~~~~~~~~~~~--~~~~~~~~~---~~~~l~~~~d~~i~~~d~~~ 191 (276)
++.|+.|+.+|++|+.||.|.+|++- +.++...+..+ .+..+...+ +.+++.++.|.++++||+..
T Consensus 128 cL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~ 207 (476)
T KOG0646|consen 128 CLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL 207 (476)
T ss_pred EEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc
Confidence 99999999999999999999999864 23445555333 345555544 34677777799999999998
Q ss_pred CCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCc----------------EEEEeecCCCCCC--c
Q 023822 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT----------------LLSTYNVKPVSRN--S 253 (276)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~~~--~ 253 (276)
+.. +.. ...+..+.+++.+|-++.++.|+.+|.|.+.++.... .+..+. +|.+ +
T Consensus 208 g~L----Llt-i~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~---Gh~~~~~ 279 (476)
T KOG0646|consen 208 GVL----LLT-ITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV---GHENESA 279 (476)
T ss_pred cee----eEE-EecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeec---cccCCcc
Confidence 653 222 2345689999999999999999999999998865322 233344 5666 9
Q ss_pred eEEEEECCCCcEEEEecCCCCCC
Q 023822 254 TLEASFSPEGMFVISGRVSPFSS 276 (276)
Q Consensus 254 v~~~~~s~~g~~l~~~~~dg~vs 276 (276)
|++++.+-||.+|++|++||.|+
T Consensus 280 ITcLais~DgtlLlSGd~dg~Vc 302 (476)
T KOG0646|consen 280 ITCLAISTDGTLLLSGDEDGKVC 302 (476)
T ss_pred eeEEEEecCccEEEeeCCCCCEE
Confidence 99999999999999999999873
No 133
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=1.1e-24 Score=166.45 Aligned_cols=246 Identities=17% Similarity=0.206 Sum_probs=185.3
Q ss_pred ccccceeeccCCCcEEEEEEcCCC--CEEEEeecCCeEEEEEccCC----eeeeeeeeeeeceEEEEEeccC-CeEEEec
Q 023822 23 SMEVGMSFRDYNGRISSMDFHKSS--SYLVTASDDESIRLYDVTAA----TCLKTINSKKYGVDLVCFTSHP-TTVIYSS 95 (276)
Q Consensus 23 ~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~ 95 (276)
.+......+-|.++|++++|+|.. +.+|+|..-|+|-+||+.+. .-+..+..|..+|.++.|+|.+ ..+++.+
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec
Confidence 344556667789999999999954 57889999999999999522 2345567889999999999955 5677777
Q ss_pred cCCCCCceEEEEccCCce--eeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee---eEeecCCCeeEec
Q 023822 96 KNGWDESLRLLSLHDNKY--LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG---LLRVQGRPAAAYD 170 (276)
Q Consensus 96 ~~~~d~~i~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~ 170 (276)
. ||+|++-|++.... +..+..-...+.++.|+.+...++.+..=|...+||+++..... .++...+..++++
T Consensus 255 y---DGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 255 Y---DGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred c---CceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 7 99999999987643 33333355667888999888888888888899999999876532 2366689999999
Q ss_pred CCC-cEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC----CCcEEEEe
Q 023822 171 DQG-LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF----RGTLLSTY 244 (276)
Q Consensus 171 ~~~-~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~ 244 (276)
|.. .++++++ |++.++||+|............-.|...|.++.|||.+-.|++.+.|..|+|||.. ...++..+
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I 411 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI 411 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee
Confidence 976 4555555 99999999998765443345566788999999999988779999999999999973 33444444
Q ss_pred ecCCCCC--CceEEEEECCCCcEEEEecC
Q 023822 245 NVKPVSR--NSTLEASFSPEGMFVISGRV 271 (276)
Q Consensus 245 ~~~~~~~--~~v~~~~~s~~g~~l~~~~~ 271 (276)
.....+. -......|.|+..++++|-.
T Consensus 412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~ 440 (498)
T KOG4328|consen 412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRY 440 (498)
T ss_pred eccCcccccccchhheeCCCccEEEEecc
Confidence 3111111 12455789999888888753
No 134
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=8.4e-25 Score=168.96 Aligned_cols=227 Identities=13% Similarity=0.134 Sum_probs=181.5
Q ss_pred cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (276)
Q Consensus 24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i 103 (276)
...+..+.+. .-.|++......++++|+..+.|+|||+....+.+.++.|...|+++.++....+|++++. .|.|
T Consensus 71 Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~---gGdi 145 (673)
T KOG4378|consen 71 VPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSD---GGDI 145 (673)
T ss_pred cceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEecc---CCcE
Confidence 3444444443 3345555555689999999999999999977778888999999999999999999999998 8999
Q ss_pred EEEEccCCceeeeeccc-CcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCCcEEE-
Q 023822 104 RLLSLHDNKYLRYFKGH-HDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLVFA- 177 (276)
Q Consensus 104 ~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~l~- 177 (276)
.+..+.++.....+... ...|.-+.|+|..+ +|.+++.+|.|.+||+....++..+ |..+...++|+|.+..|.
T Consensus 146 iih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~v 225 (673)
T KOG4378|consen 146 IIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLV 225 (673)
T ss_pred EEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEE
Confidence 99999998777777644 33566899999877 6778999999999999998887766 556677899999875443
Q ss_pred -EeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCc-EEEEeecCCCCCCceE
Q 023822 178 -VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTL 255 (276)
Q Consensus 178 -~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~ 255 (276)
+|.|..|.+||.+....... -....+...++|+++|.+|++|+..|.|..||++..+ ++..+. .|...|+
T Consensus 226 sVG~Dkki~~yD~~s~~s~~~-----l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~s---ah~~sVt 297 (673)
T KOG4378|consen 226 SVGYDKKINIYDIRSQASTDR-----LTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRS---AHDASVT 297 (673)
T ss_pred EecccceEEEeecccccccce-----eeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEee---eccccee
Confidence 44499999999997543211 1233588999999999999999999999999998654 566666 6889999
Q ss_pred EEEECCCC
Q 023822 256 EASFSPEG 263 (276)
Q Consensus 256 ~~~~s~~g 263 (276)
+++|-|.-
T Consensus 298 ~vafq~s~ 305 (673)
T KOG4378|consen 298 RVAFQPSP 305 (673)
T ss_pred EEEeeecc
Confidence 99997764
No 135
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=3.1e-22 Score=156.81 Aligned_cols=220 Identities=13% Similarity=0.133 Sum_probs=162.5
Q ss_pred eeeccCCCcEEEEEEcCCCCEEEEe-ecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822 28 MSFRDYNGRISSMDFHKSSSYLVTA-SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 106 (276)
Q Consensus 28 ~~~~~h~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~ 106 (276)
..+..+.. +..++|+|+++.++++ +.|+.+++||+.+++.+..+... ..+..++|+|+++.++++... ...+.+|
T Consensus 67 ~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~--~~~~~~~ 142 (300)
T TIGR03866 67 GTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSET--TNMAHFI 142 (300)
T ss_pred EeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecC--CCeEEEE
Confidence 33444433 5678999999977654 56899999999988877766532 346889999999999988761 2457788
Q ss_pred EccCCceeeeecccCcceEEEEeccCCCEEEE-eeCCCeEEEEeccCceeeeeEeec---------CCCeeEecCCCcEE
Q 023822 107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS-GSLDRTVLLWDQRAEKCQGLLRVQ---------GRPAAAYDDQGLVF 176 (276)
Q Consensus 107 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~l 176 (276)
|..+++....+. ....+..++|+|++++|++ +..++.|++||+++++....+... ....++++|+++.+
T Consensus 143 d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~ 221 (300)
T TIGR03866 143 DTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTA 221 (300)
T ss_pred eCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEE
Confidence 998877665543 2334578999999997754 456899999999998876655211 12358899999875
Q ss_pred EEe--eCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEe-ecCCcEEEEECCCCcEEEEeecCCCCCCc
Q 023822 177 AVA--FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKPVSRNS 253 (276)
Q Consensus 177 ~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 253 (276)
.++ .++.+.+||.++.+. .... .+...+.+++|+|+|++|+++ ..+|.|++||+.+++.+..+. ....
T Consensus 222 ~~~~~~~~~i~v~d~~~~~~----~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~----~~~~ 292 (300)
T TIGR03866 222 FVALGPANRVAVVDAKTYEV----LDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK----VGRL 292 (300)
T ss_pred EEEcCCCCeEEEEECCCCcE----EEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE----cccc
Confidence 443 367899999986542 1111 233478899999999999886 468999999999999999998 3456
Q ss_pred eEEEEECC
Q 023822 254 TLEASFSP 261 (276)
Q Consensus 254 v~~~~~s~ 261 (276)
.+.++++|
T Consensus 293 ~~~~~~~~ 300 (300)
T TIGR03866 293 PWGVVVRP 300 (300)
T ss_pred cceeEeCC
Confidence 68888876
No 136
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.93 E-value=2.2e-24 Score=158.52 Aligned_cols=240 Identities=18% Similarity=0.243 Sum_probs=177.9
Q ss_pred cCCCcEEEEEEcCC----CCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccC-CeEEEeccCCCCCceEEE
Q 023822 32 DYNGRISSMDFHKS----SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGWDESLRLL 106 (276)
Q Consensus 32 ~h~~~v~~~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~d~~i~~~ 106 (276)
.|....+.++|+-+ ..+||.++.-|.|+|.|+.++++...+.+|...|..+.+.|+. +++++++. |..|++|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~Sk---D~svRlw 163 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASK---DHSVRLW 163 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecC---CceEEEE
Confidence 47778888898753 3478999999999999999999999999999999999999976 56677777 9999999
Q ss_pred EccCCceeeee---cccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE------------------------
Q 023822 107 SLHDNKYLRYF---KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL------------------------ 159 (276)
Q Consensus 107 d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------------------ 159 (276)
++++..++..+ .+|.+.|.++.|++++.++++++.|.+|++|++...+....+
T Consensus 164 nI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 164 NIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred eccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 99999998876 579999999999999999999999999999999844322111
Q ss_pred ------eecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCC----------CeeeeeecCCCCCceE--EEECCCCcEE
Q 023822 160 ------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKG----------PFDIFSVGGDISDANV--VKFSNDGRLM 221 (276)
Q Consensus 160 ------~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~----------~~~~~~~~~~~~~i~~--~~~~~~~~~l 221 (276)
|...+-|+.|-. +.+|.-+.++.|..|.....+.. ......+.-....+.- .+|.|-++.|
T Consensus 244 fst~diHrnyVDCvrw~g-d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWFG-DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred ccccccccchHHHHHHHh-hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 011111222221 22333444899999988322211 1112222223334444 4566778999
Q ss_pred EEeecCCcEEEEECCCCcEEE-EeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 222 LLTTMEGHIHVLDSFRGTLLS-TYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 222 ~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
|.|...|.|.+||++...... +-..+......|...+|+.||..|+...+|++|
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~V 377 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTV 377 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcE
Confidence 999999999999998776632 111222356789999999999999999999986
No 137
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.93 E-value=4.6e-24 Score=156.65 Aligned_cols=228 Identities=12% Similarity=0.186 Sum_probs=181.2
Q ss_pred CcEEEEEEc-------CCCCEEEEeecCCeEEEEEccCCeeeeeeeeee-----eceEEEEEeccCCeEEEeccCCCCCc
Q 023822 35 GRISSMDFH-------KSSSYLVTASDDESIRLYDVTAATCLKTINSKK-----YGVDLVCFTSHPTTVIYSSKNGWDES 102 (276)
Q Consensus 35 ~~v~~~~~~-------~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~~~d~~ 102 (276)
..|+..+|- |+.+++|+.+.+.-|++||.-+|+....+..-. ....+++|+|||.+|+.+. ...
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy----krc 180 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY----KRC 180 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc----cce
Confidence 457777774 677899999999999999999999888775422 2467899999999999887 899
Q ss_pred eEEEEc-cCCceee--ee-----cccCcceEEEEeccCC-CEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecC
Q 023822 103 LRLLSL-HDNKYLR--YF-----KGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDD 171 (276)
Q Consensus 103 i~~~d~-~~~~~~~--~~-----~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~ 171 (276)
|+++|+ +.|+... .. .+..+-|.+++|+|-. +.++.++...++-||.-..+.+...+ +..+++.+.|.+
T Consensus 181 irvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e 260 (406)
T KOG2919|consen 181 IRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE 260 (406)
T ss_pred EEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc
Confidence 999998 5554221 11 1236778999999954 48999999999999988888888887 777899999999
Q ss_pred CCcEEEEee--CCeEEEEecccCCCCCeeeeeecCCCC-CceEE--EECCCCcEEEEeecCCcEEEEECCC-CcEEEEee
Q 023822 172 QGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDIS-DANVV--KFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYN 245 (276)
Q Consensus 172 ~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~-~i~~~--~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~ 245 (276)
+|+.|.++. +..|..||+|..... ++.+..|.. .-..| ...|++++|++|+.||.|++||+++ +..+..+.
T Consensus 261 dGn~lfsGaRk~dkIl~WDiR~~~~p---v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~ 337 (406)
T KOG2919|consen 261 DGNKLFSGARKDDKILCWDIRYSRDP---VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG 337 (406)
T ss_pred CcCeecccccCCCeEEEEeehhccch---hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc
Confidence 998887777 899999999986543 444444443 22334 4568899999999999999999988 66666666
Q ss_pred cCCCCCCceEEEEECCCCcEEEEecCC
Q 023822 246 VKPVSRNSTLEASFSPEGMFVISGRVS 272 (276)
Q Consensus 246 ~~~~~~~~v~~~~~s~~g~~l~~~~~d 272 (276)
.+...++.++++|--.++|+++..
T Consensus 338 ---~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 338 ---NYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ---cccccccceecCcccceeeeccCc
Confidence 588899999999998888887753
No 138
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.8e-25 Score=185.68 Aligned_cols=234 Identities=16% Similarity=0.195 Sum_probs=189.2
Q ss_pred CCcEEEEEEcCCCCE----EEEeecCCeEEEEEccCC------eeeeeeeeeeeceEEEEEeccCC-eEEEeccCCCCCc
Q 023822 34 NGRISSMDFHKSSSY----LVTASDDESIRLYDVTAA------TCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDES 102 (276)
Q Consensus 34 ~~~v~~~~~~~~~~~----l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~ 102 (276)
..+.+.++|.+.+.. ||.|.+||.|.+||...- ..+.+...|.+.|..+.|++... .+++|+. +|.
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~---~ge 140 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGAD---DGE 140 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCC---CCc
Confidence 456789999987665 888999999999998652 34566788999999999999776 7777776 999
Q ss_pred eEEEEccCCceeeee--cccCcceEEEEeccC-CCEEEEeeCCCeEEEEeccCceeeeeEeec----CCCeeEecCCC--
Q 023822 103 LRLLSLHDNKYLRYF--KGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQ----GRPAAAYDDQG-- 173 (276)
Q Consensus 103 i~~~d~~~~~~~~~~--~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~-- 173 (276)
|.|||++..+....+ ....+.|.+++|+.. ...|++++.+|++.|||+|..+.+..+... ....++|+|+.
T Consensus 141 I~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT 220 (1049)
T KOG0307|consen 141 ILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT 220 (1049)
T ss_pred EEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce
Confidence 999999876544444 224678999999875 447899999999999999999877776222 24579999987
Q ss_pred cEEEEee-C--CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcEEEEECCCCcEEEEeecCCC
Q 023822 174 LVFAVAF-G--GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV 249 (276)
Q Consensus 174 ~~l~~~~-d--~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 249 (276)
++++++. | -.|.+||+|.... + ...+.+|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+. .
T Consensus 221 ql~~As~dd~~PviqlWDlR~ass-P--~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p---~ 294 (1049)
T KOG0307|consen 221 QLLVASGDDSAPVIQLWDLRFASS-P--LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP---A 294 (1049)
T ss_pred eeeeecCCCCCceeEeecccccCC-c--hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC---C
Confidence 4555554 3 6899999997553 2 33446899999999999976 889999999999999999999999998 5
Q ss_pred CCCceEEEEECCCCc-EEEEecCCCCCC
Q 023822 250 SRNSTLEASFSPEGM-FVISGRVSPFSS 276 (276)
Q Consensus 250 ~~~~v~~~~~s~~g~-~l~~~~~dg~vs 276 (276)
....+..+.|.|... .++.++-||.|+
T Consensus 295 ~~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 295 QGNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred CCcceeeeeecCCCcchhhhheecccee
Confidence 778999999999775 888888888774
No 139
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=1.8e-23 Score=167.26 Aligned_cols=240 Identities=17% Similarity=0.209 Sum_probs=184.1
Q ss_pred eeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC--eeee-----eeeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA--TCLK-----TINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101 (276)
Q Consensus 29 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~ 101 (276)
.+.||.+.|+++.|+|.+..|++++.|.++.+|...+. --+. .+.+.........|+|++..+++-+. .|
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~---~G 338 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR---TG 338 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecc---cC
Confidence 34599999999999999999999999999999987644 2222 22233456889999999999998887 99
Q ss_pred ceEEEEccCC---ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEecc--------------------Cc-----
Q 023822 102 SLRLLSLHDN---KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR--------------------AE----- 153 (276)
Q Consensus 102 ~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~--------------------~~----- 153 (276)
..++|..... .....+.+|.+.|.+++|+|.|.+|++.+.|.+-+++-.- .-
T Consensus 339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence 9999983222 2334567899999999999999999999999887775321 00
Q ss_pred ----------eee-------------------------------------------------------------------
Q 023822 154 ----------KCQ------------------------------------------------------------------- 156 (276)
Q Consensus 154 ----------~~~------------------------------------------------------------------- 156 (276)
+..
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 000
Q ss_pred --------------------eeE--eecCCCeeEecCCCcEEEEee------CCeEEEEecccCCCCCeeeeeecCCCCC
Q 023822 157 --------------------GLL--RVQGRPAAAYDDQGLVFAVAF------GGYIRMFDARKYEKGPFDIFSVGGDISD 208 (276)
Q Consensus 157 --------------------~~~--~~~~~~~~~~~~~~~~l~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 208 (276)
+.+ |...+.+++.+|++++++++. -.-|++|+..+... ...+..|.-.
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~----~~~L~~HsLT 574 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ----VQELEGHSLT 574 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh----hheecccceE
Confidence 000 112233778889999999887 25699999887554 5567889999
Q ss_pred ceEEEECCCCcEEEEeecCCcEEEEECCCCcE-EEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 209 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 209 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
|+.++|||||++|++.+.|.++.+|....... -..+.....|..-|.+..|+|++++++++|-|.+|
T Consensus 575 VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~V 642 (764)
T KOG1063|consen 575 VTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKV 642 (764)
T ss_pred EEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceE
Confidence 99999999999999999999999998754322 12222233699999999999999999999999886
No 140
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=5.5e-24 Score=166.54 Aligned_cols=247 Identities=22% Similarity=0.304 Sum_probs=190.5
Q ss_pred HhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC--------CeeeeeeeeeeeceEEEEEeccCCeE
Q 023822 20 ILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA--------ATCLKTINSKKYGVDLVCFTSHPTTV 91 (276)
Q Consensus 20 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l 91 (276)
..+.+.+..++..|.+.|+.++|.|-...|++++.||++++|+++. -+++.++.+|.++|.|+++.+++.++
T Consensus 280 ~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ 359 (577)
T KOG0642|consen 280 FTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHC 359 (577)
T ss_pred hheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEE
Confidence 3455777778999999999999999999999999999999999932 25778899999999999999999999
Q ss_pred EEeccCCCCCceEEEEccCC----------ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--
Q 023822 92 IYSSKNGWDESLRLLSLHDN----------KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-- 159 (276)
Q Consensus 92 ~~~~~~~~d~~i~~~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-- 159 (276)
++++. ||.|+.|++... .....+.+|.+.++.+++++....|++++.||+++.|+.....+ ..+
T Consensus 360 ysgg~---Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~ 435 (577)
T KOG0642|consen 360 YSGGI---DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGE 435 (577)
T ss_pred Eeecc---CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCC
Confidence 99999 999999976422 12346789999999999999999999999999999999877665 222
Q ss_pred -eecC-CCeeEecCCC-cEEEEee-CCeEEEEecccCCCCCeeeeeecC-----CCCCceEEEECCCCcEEEEeecCCcE
Q 023822 160 -RVQG-RPAAAYDDQG-LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGG-----DISDANVVKFSNDGRLMLLTTMEGHI 230 (276)
Q Consensus 160 -~~~~-~~~~~~~~~~-~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i 230 (276)
...+ ...+.+-... .+++++. -+.-.++++..... +.++.... ....+..+.++|.+.+.+++..|+.|
T Consensus 436 ~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~--~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~I 513 (577)
T KOG0642|consen 436 PKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD--LLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSI 513 (577)
T ss_pred ccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh--eeeccccCCCcccccCccceEEecCCCCeeEecccCCce
Confidence 2222 2244443333 1222221 23333344333221 11111111 12357789999999999999999999
Q ss_pred EEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 231 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 231 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
+++|..+++++.... .|...++++++.|+|.+|++++.|+-|
T Consensus 514 r~~dn~~~~~l~s~~---a~~~svtslai~~ng~~l~s~s~d~sv 555 (577)
T KOG0642|consen 514 RFFDNKTGKILHSMV---AHKDSVTSLAIDPNGPYLMSGSHDGSV 555 (577)
T ss_pred ecccccccccchhee---eccceecceeecCCCceEEeecCCcee
Confidence 999999999999988 789999999999999999999999865
No 141
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.3e-23 Score=157.83 Aligned_cols=229 Identities=15% Similarity=0.183 Sum_probs=170.3
Q ss_pred EEEEEcC-------CCCEEEEeecCCeEEEEEccCCe---ee------------------eeeeeeeeceEEEEEeccCC
Q 023822 38 SSMDFHK-------SSSYLVTASDDESIRLYDVTAAT---CL------------------KTINSKKYGVDLVCFTSHPT 89 (276)
Q Consensus 38 ~~~~~~~-------~~~~l~~~~~d~~i~iwd~~~~~---~~------------------~~~~~~~~~v~~~~~~~~~~ 89 (276)
.|++|.. .|+++|.|+.|..|.|||+.-.. +. ..-.+|...|..++|+..-+
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5666642 36899999999999999985211 00 11235777888999988765
Q ss_pred e-EEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCC-CEEEEeeCCCeEEEEeccCceeee-eE-eecCCC
Q 023822 90 T-VIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQG-LL-RVQGRP 165 (276)
Q Consensus 90 ~-l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~-~~-~~~~~~ 165 (276)
. |++++. |.+|++||+.++++..++..|.+.|.++.|+|.. ..|++|+.|++|.+.|.|...... .+ -...+.
T Consensus 257 nVLaSgsa---D~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VE 333 (463)
T KOG0270|consen 257 NVLASGSA---DKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVE 333 (463)
T ss_pred eeEEecCC---CceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceE
Confidence 5 555555 9999999999999999999999999999999964 589999999999999999533322 22 445677
Q ss_pred eeEecCCCc-EEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcEEEEECCCCcEEE
Q 023822 166 AAAYDDQGL-VFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLS 242 (276)
Q Consensus 166 ~~~~~~~~~-~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~ 242 (276)
.++|.|... .+.++. ||.++-+|+|+... .++.+..|..+|.++++++.- .++++++.|+.|++|++.......
T Consensus 334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~---~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~ 410 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGK---PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS 410 (463)
T ss_pred EEEecCCCceeEEEecCCceEEeeecCCCCC---ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc
Confidence 899998763 333444 89999999998753 377888899999999999864 568889999999999986544422
Q ss_pred EeecCCCCCCceEEEEECCCCc-EEEEecCCC
Q 023822 243 TYNVKPVSRNSTLEASFSPEGM-FVISGRVSP 273 (276)
Q Consensus 243 ~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg 273 (276)
.... .-.-+...+.++.|+-. .|+.|+..+
T Consensus 411 v~~~-~~~~~rl~c~~~~~~~a~~la~GG~k~ 441 (463)
T KOG0270|consen 411 VKEH-SFKLGRLHCFALDPDVAFTLAFGGEKA 441 (463)
T ss_pred cccc-cccccceeecccCCCcceEEEecCccc
Confidence 2210 01223466777777764 567777665
No 142
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=2e-23 Score=168.05 Aligned_cols=250 Identities=14% Similarity=0.221 Sum_probs=191.1
Q ss_pred ccccceeeccCCCcEEEEEEcCC-----------CCEEEEeecCCeEEEEEccCCeeeeee-------------------
Q 023822 23 SMEVGMSFRDYNGRISSMDFHKS-----------SSYLVTASDDESIRLYDVTAATCLKTI------------------- 72 (276)
Q Consensus 23 ~~~~~~~~~~h~~~v~~~~~~~~-----------~~~l~~~~~d~~i~iwd~~~~~~~~~~------------------- 72 (276)
+......+--|...|+.+.--|- ...+.|++.|++|++||++.+..-..+
T Consensus 358 kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~ 437 (1080)
T KOG1408|consen 358 KVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQ 437 (1080)
T ss_pred cccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCch
Confidence 33444555668888888776551 235889999999999998752110000
Q ss_pred ------------------eeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEecc---
Q 023822 73 ------------------NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS--- 131 (276)
Q Consensus 73 ------------------~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~--- 131 (276)
-.....+.+++.+|++++|++|.. -|.+++|++..-+....+..|...|.|+.|+.
T Consensus 438 q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr---~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~ 514 (1080)
T KOG1408|consen 438 QIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDR---GGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVL 514 (1080)
T ss_pred hhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCc---cCceEEEEehhhhhhhheecccceeEEEeecCchh
Confidence 012346899999999999999998 89999999999998889999999999999985
Q ss_pred CCCEEEEeeCCCeEEEEeccCc-eeeeeE--eecCCCeeEecCCC---cEEEEeeCCeEEEEecccCCCCC-eeeeeecC
Q 023822 132 SKDCFISGSLDRTVLLWDQRAE-KCQGLL--RVQGRPAAAYDDQG---LVFAVAFGGYIRMFDARKYEKGP-FDIFSVGG 204 (276)
Q Consensus 132 ~~~~l~~~~~d~~i~iwd~~~~-~~~~~~--~~~~~~~~~~~~~~---~~l~~~~d~~i~~~d~~~~~~~~-~~~~~~~~ 204 (276)
..++|++++.|.-|++||.... ..++++ |...+..+.|...| +++.+|.|+.|.+=-.+...... +.......
T Consensus 515 ~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~ 594 (1080)
T KOG1408|consen 515 TNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTL 594 (1080)
T ss_pred hhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccccc
Confidence 3468999999999999998754 444555 55668888887766 55566668777654433222111 11111112
Q ss_pred CCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 205 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 205 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
....+..++..|..+++++++.|..|+|||+.+|+..+.|+....|++....+...|.|-||++...|.+.
T Consensus 595 ~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl 665 (1080)
T KOG1408|consen 595 SKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTL 665 (1080)
T ss_pred ccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCce
Confidence 23468899999999999999999999999999999999999887888999999999999999999999875
No 143
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.9e-22 Score=160.03 Aligned_cols=242 Identities=14% Similarity=0.145 Sum_probs=194.2
Q ss_pred cccceeeccC-CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCc
Q 023822 24 MEVGMSFRDY-NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES 102 (276)
Q Consensus 24 ~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~ 102 (276)
+-....+.++ +..|.+++|++ +..|.+.+.+|.|.-||+.+++....+....+.|++++.+|.+..+++++. ||.
T Consensus 58 w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd---dGv 133 (691)
T KOG2048|consen 58 WFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCD---DGV 133 (691)
T ss_pred ceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecC---Cce
Confidence 3344455555 46799999994 567888889999999999999999999999999999999999999999998 998
Q ss_pred eEEEEccCCceee--eecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-----eecC-CC----eeEec
Q 023822 103 LRLLSLHDNKYLR--YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-----RVQG-RP----AAAYD 170 (276)
Q Consensus 103 i~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~-~~----~~~~~ 170 (276)
+..++...++... .+...++.|.+++|+|++..+++|+.||.|++||..++...+.. .... -. ++.+-
T Consensus 134 l~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L 213 (691)
T KOG2048|consen 134 LYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL 213 (691)
T ss_pred EEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe
Confidence 8888887776543 34556789999999999999999999999999999998877733 1111 22 44555
Q ss_pred CCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEE-EEeecCCC
Q 023822 171 DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL-STYNVKPV 249 (276)
Q Consensus 171 ~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~ 249 (276)
.++.++++-+.|.|.+||...+.. +.....|...|.+++..+++.++++++.|+.|..|...+.+.. -.......
T Consensus 214 rd~tI~sgDS~G~V~FWd~~~gTL----iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~ 289 (691)
T KOG2048|consen 214 RDSTIASGDSAGTVTFWDSIFGTL----IQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDL 289 (691)
T ss_pred ecCcEEEecCCceEEEEcccCcch----hhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccC
Confidence 677777777789999999988765 5566678899999999999999999999999999887665431 11111225
Q ss_pred CCCceEEEEECCCCcEEEEecCCCCC
Q 023822 250 SRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 250 ~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
|...+.+++..++ .|++|+.|.++
T Consensus 290 h~hdvrs~av~~~--~l~sgG~d~~l 313 (691)
T KOG2048|consen 290 HAHDVRSMAVIEN--ALISGGRDFTL 313 (691)
T ss_pred Ccccceeeeeecc--eEEecceeeEE
Confidence 8889999999888 89999998764
No 144
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.4e-22 Score=147.55 Aligned_cols=189 Identities=11% Similarity=0.181 Sum_probs=149.2
Q ss_pred eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCC--eEEEeccCCCCCceEE
Q 023822 28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT--TVIYSSKNGWDESLRL 105 (276)
Q Consensus 28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~~~~d~~i~~ 105 (276)
+....|.++|.+++|+.||..+++|+.|+.+++||+.+++ +..+..|..+|..+.|-+... .|++++- |.+|+.
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSW---DKTlKf 141 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSW---DKTLKF 141 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEeccc---ccceee
Confidence 4456799999999999999999999999999999999994 667888999999999988766 6777775 999999
Q ss_pred EEccCCceeeeec-------------------------------------cc----CcceEEEEeccCCCEEEEeeCCCe
Q 023822 106 LSLHDNKYLRYFK-------------------------------------GH----HDRVVSLSLCSSKDCFISGSLDRT 144 (276)
Q Consensus 106 ~d~~~~~~~~~~~-------------------------------------~~----~~~i~~~~~~~~~~~l~~~~~d~~ 144 (276)
||.+...++.++. .+ .-.+.|++..++....+.|+-+|+
T Consensus 142 WD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr 221 (347)
T KOG0647|consen 142 WDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR 221 (347)
T ss_pred cccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecce
Confidence 9998765544321 01 124678888888887888999999
Q ss_pred EEEEeccCceeee--eE--ee---------cCCCeeEecCCC-cEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCce
Q 023822 145 VLLWDQRAEKCQG--LL--RV---------QGRPAAAYDDQG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDAN 210 (276)
Q Consensus 145 i~iwd~~~~~~~~--~~--~~---------~~~~~~~~~~~~-~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~ 210 (276)
+.+..+..+.+.. .+ |. ..++.++|+|.. .++++|+||+..+||-....+ +...+.+..+|+
T Consensus 222 v~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~k----Lk~s~~~~qpIt 297 (347)
T KOG0647|consen 222 VAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTK----LKTSETHPQPIT 297 (347)
T ss_pred EEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhh----hhccCcCCCccc
Confidence 8888887753322 22 21 225578999964 666667799999999876554 666678899999
Q ss_pred EEEECCCCcEEEEe
Q 023822 211 VVKFSNDGRLMLLT 224 (276)
Q Consensus 211 ~~~~~~~~~~l~~~ 224 (276)
++.|+.+|.+++.+
T Consensus 298 cc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 298 CCSFNRNGSIFAYA 311 (347)
T ss_pred eeEecCCCCEEEEE
Confidence 99999999988765
No 145
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.91 E-value=7.2e-25 Score=178.71 Aligned_cols=245 Identities=18% Similarity=0.308 Sum_probs=194.9
Q ss_pred eeeehHHHhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEE
Q 023822 13 SLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI 92 (276)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 92 (276)
.+..+....+.++.++.+.+|...|+|+.|...|.++++|+.|..++||..+++.++....+|.+.++.++.+.++..++
T Consensus 169 ~~akPgtmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~ia 248 (1113)
T KOG0644|consen 169 SIAKPGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIA 248 (1113)
T ss_pred eecCcHHHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhh
Confidence 34555667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeee--------------
Q 023822 93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL-------------- 158 (276)
Q Consensus 93 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-------------- 158 (276)
+++. |..|++|.+..+.++..+.+|++.|++++|+|-. +.+.||++++||.+-.-.+..
T Consensus 249 aaS~---D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s 321 (1113)
T KOG0644|consen 249 AASN---DKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDS 321 (1113)
T ss_pred hccc---CceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceee
Confidence 9988 9999999999999999999999999999999944 778899999999871100000
Q ss_pred E------------------eecCCCeeEecCCCcEEEEee------------CCeEEEEecccCCCCCeeeeeecCCCCC
Q 023822 159 L------------------RVQGRPAAAYDDQGLVFAVAF------------GGYIRMFDARKYEKGPFDIFSVGGDISD 208 (276)
Q Consensus 159 ~------------------~~~~~~~~~~~~~~~~l~~~~------------d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 208 (276)
+ ..+...++++......++.+. +-.+.+|++.++.. .+.+.+|...
T Consensus 322 ~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l----~H~l~ghsd~ 397 (1113)
T KOG0644|consen 322 ILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL----LHNLMGHSDE 397 (1113)
T ss_pred eeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchh----hhhhcccccc
Confidence 0 000111233333333333222 45677888877655 5666778889
Q ss_pred ceEEEECCCC-cEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822 209 ANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRV 271 (276)
Q Consensus 209 i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 271 (276)
+..+.++|-. +...+++.||...|||+..|.+++.+.. + .+.+..-+||+||..++....
T Consensus 398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~--g-h~kl~d~kFSqdgts~~lsd~ 458 (1113)
T KOG0644|consen 398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI--G-HGKLVDGKFSQDGTSIALSDD 458 (1113)
T ss_pred eeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec--c-cceeeccccCCCCceEecCCC
Confidence 9999999955 5566789999999999999999888873 3 566777899999887765443
No 146
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=2.7e-23 Score=150.92 Aligned_cols=194 Identities=13% Similarity=0.156 Sum_probs=154.5
Q ss_pred eeeeeceEEEEEec-cCCeEEEeccCCCCCceEEEEccCCce----------e-----eeecccCcceEEEEecc-CCCE
Q 023822 73 NSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHDNKY----------L-----RYFKGHHDRVVSLSLCS-SKDC 135 (276)
Q Consensus 73 ~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~~~d~~~~~~----------~-----~~~~~~~~~i~~~~~~~-~~~~ 135 (276)
..|.+.|..+...+ .++++++|+. ||.|.+||++.... . ..-.+|.-.|.++.|-| |..+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGga---dgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGA---DGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred ccCCCccceeeeccccceEEeecCC---CccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 45667888888877 5788899988 99999999976431 1 11235777899999998 4458
Q ss_pred EEEeeCCCeEEEEeccCceeeeeEe-ecCCCeeEecCC---CcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCce
Q 023822 136 FISGSLDRTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQ---GLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDAN 210 (276)
Q Consensus 136 l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~---~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~ 210 (276)
|.+++-|.++++||..+.+....+. ...+..-+++|- ..+++++. +-+|++.|+.++.. ...+.+|...|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~----sH~LsGHr~~vl 192 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF----SHTLSGHRDGVL 192 (397)
T ss_pred eecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc----eeeeccccCceE
Confidence 9999999999999999998888874 445677778774 35777777 78999999999876 788899999999
Q ss_pred EEEECCCCcE-EEEeecCCcEEEEECCCC-cEEEEe-----------ecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822 211 VVKFSNDGRL-MLLTTMEGHIHVLDSFRG-TLLSTY-----------NVKPVSRNSTLEASFSPEGMFVISGRVSP 273 (276)
Q Consensus 211 ~~~~~~~~~~-l~~~~~dg~i~i~d~~~~-~~~~~~-----------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 273 (276)
++.|+|...+ |++|+.||.|++||++.. .+...+ +....|.+.++.++|+.+|.++++++.|.
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD 268 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence 9999998765 678999999999998754 233222 22335788999999999999999988774
No 147
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.91 E-value=9.5e-22 Score=146.84 Aligned_cols=229 Identities=14% Similarity=0.224 Sum_probs=175.1
Q ss_pred CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCce
Q 023822 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY 113 (276)
Q Consensus 34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~ 113 (276)
...+..+.|+.+...|..|+.|| .++|+.+..............|..+-|+ ...++..+.. ..+.++++++.....
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~-qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIK-QPRKLKVVHFKKKTT 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecC-CCceEEEEEcccCce
Confidence 44577788999999999999998 7888876554433333333445566664 4556555542 146799999988888
Q ss_pred eeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeec---CCCeeEecC--CCcEEEEee---CCeEE
Q 023822 114 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ---GRPAAAYDD--QGLVFAVAF---GGYIR 185 (276)
Q Consensus 114 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~--~~~~l~~~~---d~~i~ 185 (276)
+..+. ...+|.++.++. +.|+++-.+. |+|||++..+.++++... +...+++++ .+.+++.-. .|.|.
T Consensus 81 ICe~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred EEEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 77776 567799999854 4567666554 999999999999988332 222455554 555777655 59999
Q ss_pred EEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCc-EEEEECCCCcEEEEeecCCCCCCceEEEEECCCCc
Q 023822 186 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH-IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM 264 (276)
Q Consensus 186 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 264 (276)
+||..+.+. ...+..|.+++.+++|+|+|.+||++|+.|+ |||+.+.+|+.+.+|+... ....|.+++|+|+++
T Consensus 157 l~d~~nl~~----v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~-~~~~IySL~Fs~ds~ 231 (391)
T KOG2110|consen 157 LFDTINLQP----VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT-YPVSIYSLSFSPDSQ 231 (391)
T ss_pred EEEccccee----eeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc-eeeEEEEEEECCCCC
Confidence 999988554 5566789999999999999999999999997 8999999999999998533 356789999999999
Q ss_pred EEEEecCCCCC
Q 023822 265 FVISGRVSPFS 275 (276)
Q Consensus 265 ~l~~~~~dg~v 275 (276)
+|++.|..++|
T Consensus 232 ~L~~sS~TeTV 242 (391)
T KOG2110|consen 232 FLAASSNTETV 242 (391)
T ss_pred eEEEecCCCeE
Confidence 99999999886
No 148
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.91 E-value=1e-22 Score=147.44 Aligned_cols=237 Identities=16% Similarity=0.231 Sum_probs=178.3
Q ss_pred ceeeccCCCcEEEEEEcC-CCCEEEEeecC-------CeEEEEEccCC---------eeeeeee-eeeeceEEEEEeccC
Q 023822 27 GMSFRDYNGRISSMDFHK-SSSYLVTASDD-------ESIRLYDVTAA---------TCLKTIN-SKKYGVDLVCFTSHP 88 (276)
Q Consensus 27 ~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d-------~~i~iwd~~~~---------~~~~~~~-~~~~~v~~~~~~~~~ 88 (276)
.+.|..|.+.|..++-+| +...|+++..+ ..+.||.+... +++..+. .+-+.+.|+.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 355777899999999999 55566666442 24679998643 2233333 344589999999999
Q ss_pred CeEEEeccCCCCCceEEEEccCCce-eeeec-----ccCcceEEEEecc--CCCEEEEeeCCCeEEEEeccCceeeeeE-
Q 023822 89 TTVIYSSKNGWDESLRLLSLHDNKY-LRYFK-----GHHDRVVSLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLL- 159 (276)
Q Consensus 89 ~~l~~~~~~~~d~~i~~~d~~~~~~-~~~~~-----~~~~~i~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~- 159 (276)
..+++-. |..|.+|++..+.. +..+. .+....++-+|+| +++.+++.+ |+++..||+|+.++...+
T Consensus 136 ~klasm~----dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~ 210 (370)
T KOG1007|consen 136 DKLASMD----DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIE 210 (370)
T ss_pred CeeEEec----cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchh
Confidence 9999887 89999999987755 33332 3456678889998 677777765 889999999998877777
Q ss_pred --eecCCCeeEecCCCc-EEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC-CcEEEEeecCCcEEEEE
Q 023822 160 --RVQGRPAAAYDDQGL-VFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLD 234 (276)
Q Consensus 160 --~~~~~~~~~~~~~~~-~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d 234 (276)
|...++.+.|+|+.+ +|+++. ||.|++||.|..+. .+..+.+|...+.++.|+|. .+++++|+.|..|.+|.
T Consensus 211 dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~---pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsc 287 (370)
T KOG1007|consen 211 DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF---PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSC 287 (370)
T ss_pred hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc---cccccCCCceEEEEEEecCccceEEEecCCCceeEEEe
Confidence 666788999999875 444444 79999999997543 47778899999999999995 47889999999999997
Q ss_pred CCCC-----------------------------cEEEEeecCCCCCCceEEEEECCCCcE-EEEecCCCC
Q 023822 235 SFRG-----------------------------TLLSTYNVKPVSRNSTLEASFSPEGMF-VISGRVSPF 274 (276)
Q Consensus 235 ~~~~-----------------------------~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~dg~ 274 (276)
...- ..+.++. .|+..|.+++||.-..+ +|+-+.||-
T Consensus 288 a~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd---ehEDSVY~~aWSsadPWiFASLSYDGR 354 (370)
T KOG1007|consen 288 ASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD---EHEDSVYALAWSSADPWIFASLSYDGR 354 (370)
T ss_pred ccccccccccccccccccCcchhhHHhccccccccccccc---ccccceEEEeeccCCCeeEEEeccCce
Confidence 5321 1122333 58899999999886665 577777774
No 149
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.1e-23 Score=157.97 Aligned_cols=207 Identities=14% Similarity=0.149 Sum_probs=159.2
Q ss_pred ccCCCcEEEEEEcCC-CCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccC-CeEEEeccCCCCCceEEEEc
Q 023822 31 RDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGWDESLRLLSL 108 (276)
Q Consensus 31 ~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~d~~i~~~d~ 108 (276)
.+|+..|..++|+.. .+.||+||.|.+|++||+.++++..++..|..+|.++.|+|.. ..|++|+. |+++.+.|.
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~---D~~V~l~D~ 316 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSY---DGTVALKDC 316 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccc---cceEEeeec
Confidence 479999999999984 5689999999999999999999999999999999999999965 56777777 999999999
Q ss_pred cCCceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCc-eeeeeE--eecCCCeeEecCCC-cEEEEee-CC
Q 023822 109 HDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAE-KCQGLL--RVQGRPAAAYDDQG-LVFAVAF-GG 182 (276)
Q Consensus 109 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~-~~~~~~--~~~~~~~~~~~~~~-~~l~~~~-d~ 182 (276)
+........-...+.|-.++|.|... .++++..||+|+-+|+|+. +++.++ |..++.++++++.- .++++++ |+
T Consensus 317 R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~ 396 (463)
T KOG0270|consen 317 RDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDK 396 (463)
T ss_pred cCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccc
Confidence 85333222222567899999998655 6788889999999999987 666666 67789999998865 3344444 99
Q ss_pred eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcEEEEECCCCcEEE
Q 023822 183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLS 242 (276)
Q Consensus 183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~ 242 (276)
.+++|++............+. -+...|.++.|+- -.++.|+..+.+++||+.+...+.
T Consensus 397 ~Vklw~~~~~~~~~v~~~~~~--~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 397 VVKLWKFDVDSPKSVKEHSFK--LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred eEEEEeecCCCCccccccccc--ccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 999999976443222222221 1235677788875 456778888899999998776543
No 150
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.3e-22 Score=148.90 Aligned_cols=195 Identities=16% Similarity=0.218 Sum_probs=159.2
Q ss_pred cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC-
Q 023822 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD- 110 (276)
Q Consensus 32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~- 110 (276)
.|+-.|..+-...++.+|++++.|..|.+|++. |+.+..+......-+..+.+|+|+++++++. .-.|++|.+--
T Consensus 185 kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gF---TpDVkVwE~~f~ 260 (420)
T KOG2096|consen 185 KHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGF---TPDVKVWEPIFT 260 (420)
T ss_pred hcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecC---CCCceEEEEEec
Confidence 466677777777788999999999999999997 9999999888878889999999999999987 88999998632
Q ss_pred --C-----ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc----e---eeeeE------eecCCCeeEec
Q 023822 111 --N-----KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE----K---CQGLL------RVQGRPAAAYD 170 (276)
Q Consensus 111 --~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~---~~~~~------~~~~~~~~~~~ 170 (276)
| ..+..+++|...|..++|+++...+++.+.||++++||++-. + .++.. .......+.++
T Consensus 261 kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~ls 340 (420)
T KOG2096|consen 261 KDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELS 340 (420)
T ss_pred cCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeC
Confidence 2 234578999999999999999999999999999999997632 1 11111 11223378999
Q ss_pred CCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEE
Q 023822 171 DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234 (276)
Q Consensus 171 ~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 234 (276)
|.+..|+.+....+++|..+.++..+. ....|...|.+++|+++|+++++++ |..++++.
T Consensus 341 P~g~~lA~s~gs~l~~~~se~g~~~~~---~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 341 PSGDSLAVSFGSDLKVFASEDGKDYPE---LEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred CCCcEEEeecCCceEEEEcccCccchh---HHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 999999999999999999988664221 1245778999999999999999886 66788876
No 151
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=7.3e-23 Score=163.82 Aligned_cols=227 Identities=17% Similarity=0.254 Sum_probs=178.6
Q ss_pred cEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceee
Q 023822 36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR 115 (276)
Q Consensus 36 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~ 115 (276)
.|..++|-|||..|+.+.. ..+.+||...|..++++++|+..|.+++|+.+|+.+++|+. |..|.+|...-... .
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~a---DK~VI~W~~klEG~-L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSA---DKSVIIWTSKLEGI-L 88 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCC---ceeEEEecccccce-e
Confidence 7999999999999888754 47999999999999999999999999999999999999998 99999998643322 2
Q ss_pred eecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEee-CCeEEEEecccCCC
Q 023822 116 YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEK 194 (276)
Q Consensus 116 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~ 194 (276)
.+ .|.+.|.||.|+|-...|++++-. ..-+|........+......+.+++|..||++++.|. +|+|.+-+-...
T Consensus 89 kY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE-- 164 (1081)
T KOG1538|consen 89 KY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE-- 164 (1081)
T ss_pred ee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCC--
Confidence 23 499999999999999999998864 4678887766555544555677899999999999998 899988753321
Q ss_pred CCeeeeeecCCCCCc----------------------------------------------eEEEECCCCcEEEEeecCC
Q 023822 195 GPFDIFSVGGDISDA----------------------------------------------NVVKFSNDGRLMLLTTMEG 228 (276)
Q Consensus 195 ~~~~~~~~~~~~~~i----------------------------------------------~~~~~~~~~~~l~~~~~dg 228 (276)
+...+....+.+.+| .|+.+-|+|.|++.|+.|+
T Consensus 165 ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk 244 (1081)
T KOG1538|consen 165 EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDK 244 (1081)
T ss_pred cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCC
Confidence 111122222233333 3455555666888888888
Q ss_pred cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 229 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 229 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
.+++|- +.|-.+.++. .....|+.++..|++++++.|..|||+
T Consensus 245 ~L~~fT-R~GvrLGTvg---~~D~WIWtV~~~PNsQ~v~~GCqDGTi 287 (1081)
T KOG1538|consen 245 QLSLFT-RDGVRLGTVG---EQDSWIWTVQAKPNSQYVVVGCQDGTI 287 (1081)
T ss_pred ceEEEe-ecCeEEeecc---ccceeEEEEEEccCCceEEEEEccCee
Confidence 888887 5677777766 467899999999999999999999986
No 152
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=9.9e-23 Score=155.82 Aligned_cols=246 Identities=17% Similarity=0.266 Sum_probs=182.1
Q ss_pred hccccceeeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCee--eeeeeeeeeceEEEEEeccCCeEEEeccCC
Q 023822 22 QSMEVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNG 98 (276)
Q Consensus 22 ~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 98 (276)
+....+..+..|.++|.++.|+| +...+++.|.||+|++-|++++.. +............+.|+.....++++..
T Consensus 222 ~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~-- 299 (498)
T KOG4328|consen 222 KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN-- 299 (498)
T ss_pred CccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec--
Confidence 34455667889999999999999 556889999999999999987643 3333335556788899988888888887
Q ss_pred CCCceEEEEccCCce-eeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeee--E----eecCCCeeEec
Q 023822 99 WDESLRLLSLHDNKY-LRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGL--L----RVQGRPAAAYD 170 (276)
Q Consensus 99 ~d~~i~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~--~----~~~~~~~~~~~ 170 (276)
=|...+||.++++. ...+.-|...|.+++++|... +|++++.|++++|||+|....... + |...+.++.|+
T Consensus 300 -~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS 378 (498)
T KOG4328|consen 300 -VGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS 378 (498)
T ss_pred -ccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEc
Confidence 67999999998765 666777889999999999665 799999999999999997544432 2 66778899999
Q ss_pred CCC-cEEEEeeCCeEEEEecc---cCCCCCeeeeeecCCCC--CceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEe
Q 023822 171 DQG-LVFAVAFGGYIRMFDAR---KYEKGPFDIFSVGGDIS--DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 244 (276)
Q Consensus 171 ~~~-~~l~~~~d~~i~~~d~~---~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 244 (276)
|.+ .+++++.|..|+|||.. ........+..-..+.. ......|.|+..++++|-.-..|-|+|-..++.+..+
T Consensus 379 Ps~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el 458 (498)
T KOG4328|consen 379 PSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCEL 458 (498)
T ss_pred CCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeec
Confidence 976 55555559999999984 21111111111111111 2345689999999999999999999998888878776
Q ss_pred ecCCCCCCceEE-EEECCCCcEEEEecCC
Q 023822 245 NVKPVSRNSTLE-ASFSPEGMFVISGRVS 272 (276)
Q Consensus 245 ~~~~~~~~~v~~-~~~s~~g~~l~~~~~d 272 (276)
... ....|.+ ..|+|-+..+++|+..
T Consensus 459 ~~P--~~~tI~~vn~~HP~~~~~~aG~~s 485 (498)
T KOG4328|consen 459 HDP--ESSTIPSVNEFHPMRDTLAAGGNS 485 (498)
T ss_pred cCc--cccccccceeecccccceeccCCc
Confidence 532 2223433 5799988866666543
No 153
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.91 E-value=2e-21 Score=158.68 Aligned_cols=147 Identities=18% Similarity=0.254 Sum_probs=119.8
Q ss_pred EEEEEEcCC--CCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822 37 ISSMDFHKS--SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL 114 (276)
Q Consensus 37 v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~ 114 (276)
|+++. +|. =+.++.|+.+|.+.+|++.+++.+.+++.+...|+++.-+|--..+++|.. +|+|.+++++.++.+
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~---~G~ViifNlK~dkil 237 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE---NGTVIIFNLKFDKIL 237 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc---CceEEEEEcccCcEE
Confidence 66654 443 357889999999999999999999999999999999999999999999998 999999999999999
Q ss_pred eeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCCcEEEEee-CCeEEEE
Q 023822 115 RYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLVFAVAF-GGYIRMF 187 (276)
Q Consensus 115 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-d~~i~~~ 187 (276)
.+++...+.|++++|..||+ .+++++..|.+.+||++..+.+..+ |...+....+.|...+++++. |+.+++|
T Consensus 238 ~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~ 315 (910)
T KOG1539|consen 238 MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVW 315 (910)
T ss_pred EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEE
Confidence 99985569999999999998 6777777899999999988766655 444555555555555555444 5444444
No 154
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=1.1e-22 Score=162.92 Aligned_cols=249 Identities=12% Similarity=0.159 Sum_probs=193.3
Q ss_pred hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC----CeeeeeeeeeeeceEEEEEeccCCeEEEeccC
Q 023822 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA----ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN 97 (276)
Q Consensus 22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 97 (276)
..+.....+.||.+.|..++|.|.|.+|++.+.|-+-|+|-.-. ...+.+-+.|....+|+++-+....++++..
T Consensus 349 ~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAd- 427 (764)
T KOG1063|consen 349 TFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGAD- 427 (764)
T ss_pred cceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeeccc-
Confidence 34455566789999999999999999999999999999987541 1234444667788999999887777778776
Q ss_pred CCCCceEEEEccC-------------------------------------------Cc----------------------
Q 023822 98 GWDESLRLLSLHD-------------------------------------------NK---------------------- 112 (276)
Q Consensus 98 ~~d~~i~~~d~~~-------------------------------------------~~---------------------- 112 (276)
...+++|+... +.
T Consensus 428 --EKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~ 505 (764)
T KOG1063|consen 428 --EKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT 505 (764)
T ss_pred --ceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence 78888887642 00
Q ss_pred -----------eeeeecccCcceEEEEeccCCCEEEEeeCCC-----eEEEEeccCceeeeeE--eecCCCeeEecCCCc
Q 023822 113 -----------YLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-----TVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGL 174 (276)
Q Consensus 113 -----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~ 174 (276)
.++.+.+|...|.+++.+|+++++|+++... .|++|+..+-...+.+ |.-.+..++|+|+++
T Consensus 506 EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~ 585 (764)
T KOG1063|consen 506 EDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGR 585 (764)
T ss_pred HHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCc
Confidence 0111347888999999999999999998743 5999999988777766 555688999999998
Q ss_pred EEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCC--cEEEEeecCCCCC
Q 023822 175 VFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG--TLLSTYNVKPVSR 251 (276)
Q Consensus 175 ~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~ 251 (276)
+|.+.+ |+++.+|...............+.|..-|.++.|+|++.+++++|.|.+|++|..... +.+..+... .+.
T Consensus 586 ~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~-~~~ 664 (764)
T KOG1063|consen 586 YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACL-KFS 664 (764)
T ss_pred EEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchh-ccC
Confidence 887777 9999999986655444444457789899999999999999999999999999998877 555543322 478
Q ss_pred CceEEEEECCC-----CcEEEEecCCCC
Q 023822 252 NSTLEASFSPE-----GMFVISGRVSPF 274 (276)
Q Consensus 252 ~~v~~~~~s~~-----g~~l~~~~~dg~ 274 (276)
.+|+.++|.|- +..++.|-+.|-
T Consensus 665 ~aVTAv~~~~~~~~e~~~~vavGle~Ge 692 (764)
T KOG1063|consen 665 LAVTAVAYLPVDHNEKGDVVAVGLEKGE 692 (764)
T ss_pred CceeeEEeeccccccccceEEEEecccE
Confidence 89999999872 225677766653
No 155
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.4e-22 Score=148.41 Aligned_cols=192 Identities=15% Similarity=0.159 Sum_probs=154.7
Q ss_pred eEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeee
Q 023822 79 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL 158 (276)
Q Consensus 79 v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 158 (276)
..++.|++.|.++++|+. +|.|.+||+.+....+.+.+|..+|.+++|+++|+.|++++.|..|.+||+..+.+.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~---nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCA---NGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeecc---CCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 789999999999999999 99999999999999999999999999999999999999999999999999999999988
Q ss_pred Ee-ecCCCeeEecCCC--cEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEEC
Q 023822 159 LR-VQGRPAAAYDDQG--LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS 235 (276)
Q Consensus 159 ~~-~~~~~~~~~~~~~--~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 235 (276)
+. ..++..+.|+|.. +.+++-.+..-.+.++..+....+..-.-........+..|.+.|+++++|...|.+.++|.
T Consensus 103 irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 103 IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 84 4568889999865 44444446556666665432211111111111122334568999999999999999999999
Q ss_pred CCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 236 FRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
.+.+++..++.. ....|..+.++..|+.|+.-+.|.++
T Consensus 183 ~t~e~vas~rit--s~~~IK~I~~s~~g~~liiNtsDRvI 220 (405)
T KOG1273|consen 183 ETLECVASFRIT--SVQAIKQIIVSRKGRFLIINTSDRVI 220 (405)
T ss_pred chheeeeeeeec--hheeeeEEEEeccCcEEEEecCCceE
Confidence 999999998841 23789999999999999999888764
No 156
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=2.2e-23 Score=155.14 Aligned_cols=209 Identities=15% Similarity=0.218 Sum_probs=158.2
Q ss_pred cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC---------------------------C----------
Q 023822 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA---------------------------A---------- 66 (276)
Q Consensus 24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---------------------------~---------- 66 (276)
.....+++.|.+.|..+++.. ..+++++.|.+|+.|.++. |
T Consensus 99 R~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R 176 (433)
T KOG0268|consen 99 RECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQR 176 (433)
T ss_pred hhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeeccccc
Confidence 455678999999999999987 6788888999999887431 1
Q ss_pred -eeeeeeeeeeeceEEEEEeccCCeEEEec-cCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCe
Q 023822 67 -TCLKTINSKKYGVDLVCFTSHPTTVIYSS-KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT 144 (276)
Q Consensus 67 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 144 (276)
.++..+.-....+.++.|+|....++.++ . |+.|.+||++++.+++.+. -...-+.++|+|..-.|++|++|..
T Consensus 177 ~~Pv~smswG~Dti~svkfNpvETsILas~~s---DrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~n 252 (433)
T KOG0268|consen 177 DNPVSSMSWGADSISSVKFNPVETSILASCAS---DRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHN 252 (433)
T ss_pred CCccceeecCCCceeEEecCCCcchheeeecc---CCceEEEecccCCccceee-eeccccceecCccccceeecccccc
Confidence 12222233334578889999877655554 5 9999999999999887654 2344578999998888999999999
Q ss_pred EEEEeccCceeeeeE---eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcE
Q 023822 145 VLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL 220 (276)
Q Consensus 145 i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 220 (276)
++.||++........ +...+..+.|+|.|+-+++++ |.+|++|..+.+....+.-. ..-..|.++.||.|.+|
T Consensus 253 lY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht---kRMq~V~~Vk~S~Dsky 329 (433)
T KOG0268|consen 253 LYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT---KRMQHVFCVKYSMDSKY 329 (433)
T ss_pred ceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH---hhhheeeEEEEeccccE
Confidence 999999976543333 555677899999998777777 99999999987653221111 12246899999999999
Q ss_pred EEEeecCCcEEEEECCCCcEE
Q 023822 221 MLLTTMEGHIHVLDSFRGTLL 241 (276)
Q Consensus 221 l~~~~~dg~i~i~d~~~~~~~ 241 (276)
+++||.|+.|++|...-.+.+
T Consensus 330 i~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 330 IISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred EEecCCCcceeeeecchhhhc
Confidence 999999999999987654433
No 157
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=4.1e-23 Score=164.30 Aligned_cols=124 Identities=16% Similarity=0.271 Sum_probs=106.8
Q ss_pred cceeeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCeee------eeeeeeeeceEEEEEeccCCeEEEeccCC
Q 023822 26 VGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCL------KTINSKKYGVDLVCFTSHPTTVIYSSKNG 98 (276)
Q Consensus 26 ~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 98 (276)
.+-.+.+|...|+.+.|+| +..+||+|+.|..|+||.+..+-.. ..+...+-.+.++.|+|....|+..+.
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a-- 148 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGA-- 148 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEecc--
Confidence 5566789999999999999 6678999999999999999844211 223344567899999998887777776
Q ss_pred CCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccC
Q 023822 99 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA 152 (276)
Q Consensus 99 ~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 152 (276)
.|.+++||+.+++.+..+.+|.+.|.++.|+.||.+|++++.|..|+|||.+.
T Consensus 149 -~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 149 -HGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred -CceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 89999999999999999999999999999999999999999999999999763
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.4e-22 Score=156.88 Aligned_cols=229 Identities=11% Similarity=0.157 Sum_probs=178.4
Q ss_pred cEEEEEEcCCCCE-EEEeecCCeEEEEEccCCe---eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC
Q 023822 36 RISSMDFHKSSSY-LVTASDDESIRLYDVTAAT---CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN 111 (276)
Q Consensus 36 ~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~ 111 (276)
.+.++.|+....+ +++.+.|..+++|.-. ++ ....-......-.|++......++++++. .+.|+|||++..
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~-g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~---~~~Vkiwdl~~k 111 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKD-GKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQ---SGCVKIWDLRAK 111 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEeccc-CCCCccceeeccccchHHHHhhhhcceeeeccCc---CceeeehhhHHH
Confidence 4899999886542 2344567889999743 33 11111111123445555556688999888 999999999977
Q ss_pred ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe---ecCCCeeEecCCCcEEEEee--CCeEEE
Q 023822 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR---VQGRPAAAYDDQGLVFAVAF--GGYIRM 186 (276)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~--d~~i~~ 186 (276)
.+.+.+++|...|+++.++-...+||+++..|.|.+..+.++.....+. ...++.+.|+|..+++.+.. +|.|.+
T Consensus 112 l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtl 191 (673)
T KOG4378|consen 112 LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTL 191 (673)
T ss_pred HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEE
Confidence 7888899999999999999999999999999999999999988777773 23356789999886654443 799999
Q ss_pred EecccCCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcE
Q 023822 187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF 265 (276)
Q Consensus 187 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 265 (276)
||+..... + ......|..+...|+|+|.. .+|++.+.|..|.+||+...+....+. ...+...++|+++|.+
T Consensus 192 wDv~g~sp--~-~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~----y~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 192 WDVQGMSP--I-FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT----YSHPLSTVAFSECGTY 264 (673)
T ss_pred EeccCCCc--c-cchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee----ecCCcceeeecCCceE
Confidence 99987543 1 33456788999999999954 677889999999999999888877776 6778999999999999
Q ss_pred EEEecCCCCC
Q 023822 266 VISGRVSPFS 275 (276)
Q Consensus 266 l~~~~~dg~v 275 (276)
|+.|...|-+
T Consensus 265 L~aG~s~G~~ 274 (673)
T KOG4378|consen 265 LCAGNSKGEL 274 (673)
T ss_pred EEeecCCceE
Confidence 9999988753
No 159
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=4.4e-22 Score=149.00 Aligned_cols=207 Identities=16% Similarity=0.233 Sum_probs=157.5
Q ss_pred hccccceeeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCeee---eeeeeeeeceEEEEEeccCC-eEEEecc
Q 023822 22 QSMEVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCL---KTINSKKYGVDLVCFTSHPT-TVIYSSK 96 (276)
Q Consensus 22 ~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~-~l~~~~~ 96 (276)
...+++.++.+|.+.=+.++||| ....|++|.--+.|++|...++.-. ..+.+|...|-.++|+|..+ .|++++.
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~ 278 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC 278 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence 45678889999999999999999 3335888888889999999887543 33567999999999999765 5566666
Q ss_pred CCCCCceEEEEccCCc--eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce---eeeeE--eecCCCeeEe
Q 023822 97 NGWDESLRLLSLHDNK--YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK---CQGLL--RVQGRPAAAY 169 (276)
Q Consensus 97 ~~~d~~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~--~~~~~~~~~~ 169 (276)
|++|+|||++.+. .....+.|.+.|+.+.|+..-.+|++|+.||+++|||+|+.+ ++..+ |..++.++.|
T Consensus 279 ---DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW 355 (440)
T KOG0302|consen 279 ---DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEW 355 (440)
T ss_pred ---CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEe
Confidence 9999999999883 222337899999999999988899999999999999999654 44444 7788999999
Q ss_pred cCCC--cEEEEeeCCeEEEEecccCCC---------------CCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcEE
Q 023822 170 DDQG--LVFAVAFGGYIRMFDARKYEK---------------GPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIH 231 (276)
Q Consensus 170 ~~~~--~~l~~~~d~~i~~~d~~~~~~---------------~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~ 231 (276)
+|.. .+++++.|.+|.+||+..-.. ++..++. ......+..+.|+++- .+|++.+.|| +.
T Consensus 356 ~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFV-HqGQke~KevhWH~QiPG~lvsTa~dG-fn 433 (440)
T KOG0302|consen 356 HPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFV-HQGQKEVKEVHWHRQIPGLLVSTAIDG-FN 433 (440)
T ss_pred ccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEE-ecchhHhhhheeccCCCCeEEEecccc-ee
Confidence 9854 555666699999999864321 1111222 2233568889999864 5677888887 34
Q ss_pred EE
Q 023822 232 VL 233 (276)
Q Consensus 232 i~ 233 (276)
||
T Consensus 434 Vf 435 (440)
T KOG0302|consen 434 VF 435 (440)
T ss_pred EE
Confidence 44
No 160
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.90 E-value=2.6e-22 Score=143.57 Aligned_cols=244 Identities=11% Similarity=0.108 Sum_probs=176.1
Q ss_pred ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeee-eeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822 25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (276)
Q Consensus 25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i 103 (276)
.+...+++|.+.|+++.|..+++ |.+|..-|.|++|++.+.+....++ .+...|+.+.--|+ ..+.+-+. |..+
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgR---d~~L 79 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGR---DPLL 79 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCC---CceE
Confidence 35567889999999999988765 8899999999999999988888887 56677888888887 55666666 9999
Q ss_pred EEEEccCCceeee-------------------------ec----------------------------ccCcceEEEEec
Q 023822 104 RLLSLHDNKYLRY-------------------------FK----------------------------GHHDRVVSLSLC 130 (276)
Q Consensus 104 ~~~d~~~~~~~~~-------------------------~~----------------------------~~~~~i~~~~~~ 130 (276)
.+|++.-+..+.. +. +..+.+.+..+.
T Consensus 80 ~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 80 ILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred EEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 9998865221100 00 011234454432
Q ss_pred c-CCC--EEEEeeCCCeEEEEeccCceeeeeE------------eecCCCeeEecCCC-cEEEEeeCCeEEEEecccCCC
Q 023822 131 S-SKD--CFISGSLDRTVLLWDQRAEKCQGLL------------RVQGRPAAAYDDQG-LVFAVAFGGYIRMFDARKYEK 194 (276)
Q Consensus 131 ~-~~~--~l~~~~~d~~i~iwd~~~~~~~~~~------------~~~~~~~~~~~~~~-~~l~~~~d~~i~~~d~~~~~~ 194 (276)
- .+. ++++|.++|.+.+||+.++..+..+ +..++..+.+.+.- +=+..+-+..+..|.+.....
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG 239 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence 2 222 5677888999999999987433332 34445566665432 333344467788888765321
Q ss_pred CCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCC
Q 023822 195 GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPF 274 (276)
Q Consensus 195 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 274 (276)
.........-.+..+..+.+-||++.+|+++.|++||||+.++..++..++ .|.+.|++++|+|+...+|+++.|+.
T Consensus 240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk---yHsagvn~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK---YHSAGVNAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh---hhhcceeEEEeCCCCchhhhccCCce
Confidence 111111122233468889999999999999999999999999999999999 68899999999999999999999998
Q ss_pred CC
Q 023822 275 SS 276 (276)
Q Consensus 275 vs 276 (276)
+|
T Consensus 317 IS 318 (323)
T KOG0322|consen 317 IS 318 (323)
T ss_pred EE
Confidence 75
No 161
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=1.5e-21 Score=151.30 Aligned_cols=239 Identities=12% Similarity=0.094 Sum_probs=184.9
Q ss_pred eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEE
Q 023822 28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 107 (276)
Q Consensus 28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d 107 (276)
....+|......++.+|+.++++|++.|+.+++|+ ..++..+. .-..++.++.|+|.+ .++.+.. .|...+.|
T Consensus 362 ~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~---~G~w~V~d 434 (626)
T KOG2106|consen 362 LTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSG-VVAVGTA---TGRWFVLD 434 (626)
T ss_pred EEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE-EecCceeEeeccCcc-eEEEeec---cceEEEEe
Confidence 34568999999999999999999999999999999 34443333 234578999999999 8999988 99999999
Q ss_pred ccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee-eE---eecCCCeeEecCCCcEEEEee-CC
Q 023822 108 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-LL---RVQGRPAAAYDDQGLVFAVAF-GG 182 (276)
Q Consensus 108 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~---~~~~~~~~~~~~~~~~l~~~~-d~ 182 (276)
.++...+..-.. ..++++++|+|+|.+||.|+.|+.|++|.+....... .. +..++..+.|++|++++.+-+ |-
T Consensus 435 ~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~ 513 (626)
T KOG2106|consen 435 TETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDY 513 (626)
T ss_pred cccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCce
Confidence 999665554444 8899999999999999999999999999987543332 22 456778999999999999888 89
Q ss_pred eEEEEecccCCCCC-ee-------------eeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCC
Q 023822 183 YIRMFDARKYEKGP-FD-------------IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP 248 (276)
Q Consensus 183 ~i~~~d~~~~~~~~-~~-------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 248 (276)
.|..|....-.... .. ......+...+..++-+.+++++|+|.+.|.|++|...-.+....+....
T Consensus 514 eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ 593 (626)
T KOG2106|consen 514 EILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYG 593 (626)
T ss_pred EEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeec
Confidence 99999543322100 00 00112345567777888888999999999999999976555544444344
Q ss_pred CCCCceEEEEECCCCcEEEEecCCCC
Q 023822 249 VSRNSTLEASFSPEGMFVISGRVSPF 274 (276)
Q Consensus 249 ~~~~~v~~~~~s~~g~~l~~~~~dg~ 274 (276)
+|.+-|.+++|..+...|++.+.|-.
T Consensus 594 ghs~~vt~V~Fl~~d~~li~tg~D~S 619 (626)
T KOG2106|consen 594 GHSSHVTNVAFLCKDSHLISTGKDTS 619 (626)
T ss_pred cccceeEEEEEeeCCceEEecCCCce
Confidence 89999999999998888888777643
No 162
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=6.3e-22 Score=157.21 Aligned_cols=239 Identities=16% Similarity=0.234 Sum_probs=167.1
Q ss_pred cCCCcEEE--EEEcC---CCCEEEEeecCCeEEEEEccCCee------eeeeeeeeeceEEEEEeccCCeEEEeccCCCC
Q 023822 32 DYNGRISS--MDFHK---SSSYLVTASDDESIRLYDVTAATC------LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD 100 (276)
Q Consensus 32 ~h~~~v~~--~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d 100 (276)
.|.-++.- ..|++ ....||.+.+||.|.++|...... +.....|.+.|.++.|.|....|++++. |
T Consensus 45 ~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasG---D 121 (720)
T KOG0321|consen 45 NDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASG---D 121 (720)
T ss_pred cCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccC---C
Confidence 34444443 66765 345899999999999999865332 3455689999999999996677777776 9
Q ss_pred CceEEEEccCCceeee--ecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCcee--------------------ee
Q 023822 101 ESLRLLSLHDNKYLRY--FKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKC--------------------QG 157 (276)
Q Consensus 101 ~~i~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~--------------------~~ 157 (276)
.++++||+.+.+.... +.+|...+.+++|.|... .|++|+.||.|.|||++.... .+
T Consensus 122 sT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk 201 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK 201 (720)
T ss_pred ceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence 9999999999988766 889999999999999665 899999999999999985331 00
Q ss_pred eE---------eecC----CCeeEecCCCcEEEEee-CCeEEEEecccCCC----CCeeeeeecCC---CCCceEEEECC
Q 023822 158 LL---------RVQG----RPAAAYDDQGLVFAVAF-GGYIRMFDARKYEK----GPFDIFSVGGD---ISDANVVKFSN 216 (276)
Q Consensus 158 ~~---------~~~~----~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~----~~~~~~~~~~~---~~~i~~~~~~~ 216 (276)
.+ +... +..+.|-.+..++.++. |+.|+|||++.... .+.....+..+ ...+.++....
T Consensus 202 p~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs 281 (720)
T KOG0321|consen 202 PLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS 281 (720)
T ss_pred hhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC
Confidence 00 0001 12334444444444555 99999999997542 22222223333 33577788888
Q ss_pred CCcEEEEeecCCcEEEEECCCCcE--EEEeecCCCCCCceEEEEECCCCcEEEEecCCCC
Q 023822 217 DGRLMLLTTMEGHIHVLDSFRGTL--LSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPF 274 (276)
Q Consensus 217 ~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 274 (276)
.|.+|++.+.|+.|++|++.+... +..+.... ...--..-..+||+.+|++|+.|+-
T Consensus 282 sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~-~~sf~vks~lSpd~~~l~SgSsd~~ 340 (720)
T KOG0321|consen 282 SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKL-NSSFYVKSELSPDDCSLLSGSSDEQ 340 (720)
T ss_pred CCCeEEEEecCCcEEEEeccccCcCchhhccCcc-cceeeeeeecCCCCceEeccCCCcc
Confidence 889999888899999999876433 33333211 1111222356899999999999875
No 163
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=5.5e-21 Score=140.66 Aligned_cols=232 Identities=14% Similarity=0.228 Sum_probs=167.8
Q ss_pred EEEEEEcCCCCEEEEeecCCeEEEEEccCC------------eeeeeee-eeeeceEEEEEe-------ccCCeEEEecc
Q 023822 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAA------------TCLKTIN-SKKYGVDLVCFT-------SHPTTVIYSSK 96 (276)
Q Consensus 37 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------------~~~~~~~-~~~~~v~~~~~~-------~~~~~l~~~~~ 96 (276)
...+.|+|||..|++-+.|..+.+|++... +....++ .....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 446889999999999999999999998521 0111111 123356777775 56677888877
Q ss_pred CCCCCceEEEEccCCceeeeecc--cCcc---eEEEEeccCCCEEEEeeCCCeEEEEec-cCceeee---eE-e-----e
Q 023822 97 NGWDESLRLLSLHDNKYLRYFKG--HHDR---VVSLSLCSSKDCFISGSLDRTVLLWDQ-RAEKCQG---LL-R-----V 161 (276)
Q Consensus 97 ~~~d~~i~~~d~~~~~~~~~~~~--~~~~---i~~~~~~~~~~~l~~~~~d~~i~iwd~-~~~~~~~---~~-~-----~ 161 (276)
+.-|++||.-+++....+.. |... ..+++|+|||.+|++|. ...|+++|+ |.++.-. ++ + .
T Consensus 132 ---~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 132 ---DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred ---cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccc
Confidence 99999999999988776643 4333 46899999999888665 678999999 5443221 11 1 2
Q ss_pred cCCCeeEecCCC-cEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec-CCcEEEEECCC-
Q 023822 162 QGRPAAAYDDQG-LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFR- 237 (276)
Q Consensus 162 ~~~~~~~~~~~~-~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~- 237 (276)
.-+.+++|+|.. ..+++++ ..++-+|.-..... ...+.+|.+.|+.+.|.++|+.|++|+. |-.|..||++.
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p----l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP----LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCc----eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 335689999965 4777776 67777777666444 6667799999999999999999999875 67899999985
Q ss_pred CcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCCC
Q 023822 238 GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFSS 276 (276)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~vs 276 (276)
+.++..+..+.+....-.-+...|+|++|++|+.||.|+
T Consensus 284 ~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~ 322 (406)
T KOG2919|consen 284 RDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVR 322 (406)
T ss_pred cchhhhhhhhccCccceEEEecCCCCceeeccCCCccEE
Confidence 445556653332223333355679999999999999874
No 164
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.89 E-value=1e-19 Score=144.25 Aligned_cols=247 Identities=9% Similarity=0.054 Sum_probs=162.2
Q ss_pred ccccceeeccCCCcEEEEEEcCCCCEEEEee-cCCeEEEEEcc-CCee--eeeeeeeeeceEEEEEeccCCeEEEeccCC
Q 023822 23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTAS-DDESIRLYDVT-AATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNG 98 (276)
Q Consensus 23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 98 (276)
.++....+.. .+....++++|++++|++++ .++.|.+|++. +++. +.... .......++++|+++.++++...
T Consensus 24 ~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~- 100 (330)
T PRK11028 24 ALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYN- 100 (330)
T ss_pred ceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcC-
Confidence 3445555543 35577899999999987664 57889999986 3332 22222 22346789999999999988763
Q ss_pred CCCceEEEEccCCc----eeeeecccCcceEEEEeccCCCEEEEee-CCCeEEEEeccCceeee-------eE-eecCCC
Q 023822 99 WDESLRLLSLHDNK----YLRYFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQG-------LL-RVQGRP 165 (276)
Q Consensus 99 ~d~~i~~~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~-------~~-~~~~~~ 165 (276)
++.|.+|++.+.. .+..+. +......++++|+++++++++ .++.|.+||+++...+. .. ......
T Consensus 101 -~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~ 178 (330)
T PRK11028 101 -ANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPR 178 (330)
T ss_pred -CCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCc
Confidence 8999999996432 222222 233467788999999876554 56999999998643221 11 233456
Q ss_pred eeEecCCCcEEEEee--CCeEEEEecccCCCCCeeeeeecC------CCCCceEEEECCCCcEEEEeec-CCcEEEEECC
Q 023822 166 AAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGG------DISDANVVKFSNDGRLMLLTTM-EGHIHVLDSF 236 (276)
Q Consensus 166 ~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~ 236 (276)
.+.|+|+++++++.. ++.|.+||+............... +......+.++|+|++++++.. ++.|.+|++.
T Consensus 179 ~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 179 HMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVS 258 (330)
T ss_pred eEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEe
Confidence 899999999887776 799999999742111111111111 1122346899999999998854 6899999986
Q ss_pred CCc-EEEEeecCCCCCCceEEEEECCCCcEEEEecC-CCCC
Q 023822 237 RGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISGRV-SPFS 275 (276)
Q Consensus 237 ~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~v 275 (276)
... .+...... ........++|+|||++|+++.. +++|
T Consensus 259 ~~~~~~~~~~~~-~~~~~p~~~~~~~dg~~l~va~~~~~~v 298 (330)
T PRK11028 259 EDGSVLSFEGHQ-PTETQPRGFNIDHSGKYLIAAGQKSHHI 298 (330)
T ss_pred CCCCeEEEeEEE-eccccCCceEECCCCCEEEEEEccCCcE
Confidence 433 22211110 11234567899999999988775 6654
No 165
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=3.7e-22 Score=146.92 Aligned_cols=208 Identities=20% Similarity=0.321 Sum_probs=160.6
Q ss_pred cccceeeccCCCcEEEEEEcCC-CCEEEEeecCCeEEEEEccCCeeeeee---eeeeeceEEEEEeccCCeEEEeccCCC
Q 023822 24 MEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAATCLKTI---NSKKYGVDLVCFTSHPTTVIYSSKNGW 99 (276)
Q Consensus 24 ~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~~~~ 99 (276)
.+....+.+|...|+.+.+.|+ .++++++|.|..|++|++++..++..+ .+|...|.++.|++++.++++++.
T Consensus 125 ~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGm--- 201 (385)
T KOG1034|consen 125 GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGM--- 201 (385)
T ss_pred hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCC---
Confidence 3455678899999999999995 478899999999999999999999887 578899999999999999999998
Q ss_pred CCceEEEEccCCceee----------------------------eecccCcceEEEEeccCCCEEEEeeCCCeEEEEecc
Q 023822 100 DESLRLLSLHDNKYLR----------------------------YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR 151 (276)
Q Consensus 100 d~~i~~~d~~~~~~~~----------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 151 (276)
|.+|++|++...+... +-.-|...|-|+.|- |+++++=+-++.|..|...
T Consensus 202 Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pg 279 (385)
T KOG1034|consen 202 DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPG 279 (385)
T ss_pred cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecc
Confidence 9999999998432100 112366667777773 5788998889999999872
Q ss_pred -Cceee----------eeEeecC-----CC--eeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEE
Q 023822 152 -AEKCQ----------GLLRVQG-----RP--AAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVV 212 (276)
Q Consensus 152 -~~~~~----------~~~~~~~-----~~--~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~ 212 (276)
-.+.+ ..+..-. +. ..+++|-++.|+.+. .|.+++||++..+...............|...
T Consensus 280 kl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~ 359 (385)
T KOG1034|consen 280 KLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQT 359 (385)
T ss_pred hhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeee
Confidence 11111 1111111 11 345677788888888 79999999998776444444444556689999
Q ss_pred EECCCCcEEEEeecCCcEEEEECC
Q 023822 213 KFSNDGRLMLLTTMEGHIHVLDSF 236 (276)
Q Consensus 213 ~~~~~~~~l~~~~~dg~i~i~d~~ 236 (276)
+|+.||.+|+....|++|.-||..
T Consensus 360 sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 360 SFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eecccCcEEEEEeCCCcEEEEEee
Confidence 999999999999999999999853
No 166
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.1e-22 Score=171.06 Aligned_cols=212 Identities=15% Similarity=0.173 Sum_probs=167.1
Q ss_pred hccccceeeccCCCcEEEEEEcCC-CCEEEEeecCCeEEEEEccCCeeeeeee--eeeeceEEEEEeccCCeEEEeccCC
Q 023822 22 QSMEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNG 98 (276)
Q Consensus 22 ~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~ 98 (276)
.....+.+...|++.|..+.|++. +++||+|+.||.|.|||+.+.+.-.... .....|.+++|+..-.+++..+..
T Consensus 104 ~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~- 182 (1049)
T KOG0307|consen 104 ASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSP- 182 (1049)
T ss_pred cchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCC-
Confidence 445667788899999999999995 5599999999999999998765444442 245679999999876665544432
Q ss_pred CCCceEEEEccCCceeeeecccCc--ceEEEEeccCCC-EEEEeeCCC---eEEEEeccCce-eeeeE--eecCCCeeEe
Q 023822 99 WDESLRLLSLHDNKYLRYFKGHHD--RVVSLSLCSSKD-CFISGSLDR---TVLLWDQRAEK-CQGLL--RVQGRPAAAY 169 (276)
Q Consensus 99 ~d~~i~~~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~l~~~~~d~---~i~iwd~~~~~-~~~~~--~~~~~~~~~~ 169 (276)
+|.+.|||++..+++-.+..+.+ .+..++|+|+.. .+++++.|. .|.+||+|... +.+.+ |..++.++.|
T Consensus 183 -sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsW 261 (1049)
T KOG0307|consen 183 -SGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSW 261 (1049)
T ss_pred -CCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeecc
Confidence 88999999999988877766655 477899999865 677776654 59999998643 33433 7778899999
Q ss_pred cCCC-cEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCc-EEEEeecCCcEEEEECCCCc
Q 023822 170 DDQG-LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGT 239 (276)
Q Consensus 170 ~~~~-~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~ 239 (276)
++.+ ++++++. |+.|.+|+.++++. +..+......+..+.|+|... .+++++-||.|.||.+....
T Consensus 262 c~~D~~lllSsgkD~~ii~wN~~tgEv----l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 262 CPQDPRLLLSSGKDNRIICWNPNTGEV----LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCCchhhhcccCCCCeeEecCCCceE----eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9977 5555555 99999999999775 666777778899999999765 78888999999999987654
No 167
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.88 E-value=6.4e-21 Score=138.34 Aligned_cols=231 Identities=12% Similarity=0.121 Sum_probs=172.1
Q ss_pred ccCCCcEEEEEEcCCC-----CEEEEeecCCeEEEEEccCCe--e--eeee-----eeeeeceEEEEEec-cCCeEEEec
Q 023822 31 RDYNGRISSMDFHKSS-----SYLVTASDDESIRLYDVTAAT--C--LKTI-----NSKKYGVDLVCFTS-HPTTVIYSS 95 (276)
Q Consensus 31 ~~h~~~v~~~~~~~~~-----~~l~~~~~d~~i~iwd~~~~~--~--~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~ 95 (276)
-.|.-+++.+-|.|+. .+||+++ -.+|+|.+...+ . ...+ ..+..++++..|+. +.+++.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 3688999999999975 3566654 369999987321 1 1111 23456899999987 455666666
Q ss_pred cCCCCCceEEEEccCCce---eeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeEeec-----CCCe
Q 023822 96 KNGWDESLRLLSLHDNKY---LRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQ-----GRPA 166 (276)
Q Consensus 96 ~~~~d~~i~~~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~ 166 (276)
- |-+..+||++++.. ...+-.|..+|..++|...+. .|++.+.||++++||+|..+....+-.. +...
T Consensus 171 i---DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlR 247 (364)
T KOG0290|consen 171 I---DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLR 247 (364)
T ss_pred c---cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCccee
Confidence 6 99999999998733 456778999999999998654 8999999999999999987765555222 2335
Q ss_pred eEecCCC-cEEEEee--CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC-CcEEEEeecCCcEEEEECCCCcE--
Q 023822 167 AAYDDQG-LVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTL-- 240 (276)
Q Consensus 167 ~~~~~~~-~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~-- 240 (276)
++|+++. +++++-. ...|.+.|+|.... .+..+..|.+.|+.++|.|. ...|++++.|..+.+||+...-.
T Consensus 248 LswnkqDpnymATf~~dS~~V~iLDiR~P~t---pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~ 324 (364)
T KOG0290|consen 248 LSWNKQDPNYMATFAMDSNKVVILDIRVPCT---PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPREN 324 (364)
T ss_pred eccCcCCchHHhhhhcCCceEEEEEecCCCc---ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccC
Confidence 7777765 4554443 48899999997543 46778899999999999996 47899999999999999875322
Q ss_pred ----EEEeecCCCCCCceEEEEECC-CCcEEEEecCCC
Q 023822 241 ----LSTYNVKPVSRNSTLEASFSP-EGMFVISGRVSP 273 (276)
Q Consensus 241 ----~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg 273 (276)
+..+. ..+.|+.+.|++ .+.+++.+..+.
T Consensus 325 ~~dPilay~----a~~EVNqi~Ws~~~~Dwiai~~~kk 358 (364)
T KOG0290|consen 325 GEDPILAYT----AGGEVNQIQWSSSQPDWIAICFGKK 358 (364)
T ss_pred CCCchhhhh----ccceeeeeeecccCCCEEEEEecCe
Confidence 22222 567899999995 567888877654
No 168
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.7e-21 Score=144.11 Aligned_cols=189 Identities=19% Similarity=0.299 Sum_probs=144.9
Q ss_pred CEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEec--cCCeEEEeccCCCCCceEEEEccCCceee--eecccC-
Q 023822 47 SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDESLRLLSLHDNKYLR--YFKGHH- 121 (276)
Q Consensus 47 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~d~~i~~~d~~~~~~~~--~~~~~~- 121 (276)
+.+|++...|.|++||..+++.+..+++++..+..+.|.. ....+.+++. ||+|++||++...... .+..++
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ss---DG~Vr~wD~Rs~~e~a~~~~~~~~~ 117 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSS---DGTVRLWDIRSQAESARISWTQQSG 117 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEecc---CCeEEEEEeecchhhhheeccCCCC
Confidence 5688999999999999999999999999999999999987 4566777777 9999999999875443 334454
Q ss_pred cceEEEEeccCCCEEEEeeC----CCeEEEEeccCcee-eeeE---eecCCCeeEecCCC-cEEEEee-CCeEEEEeccc
Q 023822 122 DRVVSLSLCSSKDCFISGSL----DRTVLLWDQRAEKC-QGLL---RVQGRPAAAYDDQG-LVFAVAF-GGYIRMFDARK 191 (276)
Q Consensus 122 ~~i~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~-~~~~---~~~~~~~~~~~~~~-~~l~~~~-d~~i~~~d~~~ 191 (276)
.+..+++..-.++.+++|.. +-.|.+||+|..+. +..+ |...++++.|+|+. .+|++|+ ||.+.+||++.
T Consensus 118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 46677777767788888764 66899999998776 5544 78889999999976 5666666 99999999987
Q ss_pred CCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcEEEEECCCCc
Q 023822 192 YEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGT 239 (276)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~ 239 (276)
..... .+...-.+...|..+.|..++ +.+.+-+......+|+++.+.
T Consensus 198 d~EeD-aL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 198 DNEED-ALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred Ccchh-hHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 54321 123333456678888888877 346667777778888876554
No 169
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=2.1e-20 Score=152.72 Aligned_cols=221 Identities=13% Similarity=0.117 Sum_probs=155.9
Q ss_pred eeeccCCCcEEEEEEcCCCCEEEEeecC---CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822 28 MSFRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104 (276)
Q Consensus 28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~ 104 (276)
+.+..|...+.+++|+|||+.|+..+.+ ..|++||+.+++.... ....+....++|+|+++.|+++... ++.+.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~La~~~~~--~g~~~ 273 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSRLAFASSK--DGVLN 273 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCEEEEEEec--CCcEE
Confidence 4566788899999999999999987654 4799999988754222 2122234578999999999887532 56554
Q ss_pred --EEEccCCceeeeecccCcceEEEEeccCCCEEEEee-CCCeEEEEeccCce-eeeeEeecCCCeeEecCCCcEEEEee
Q 023822 105 --LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEK-CQGLLRVQGRPAAAYDDQGLVFAVAF 180 (276)
Q Consensus 105 --~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 180 (276)
+||+.+++ ...+..+...+....|+|||+.|+..+ .++...+|+++... ....+.... ....|+|+++.++...
T Consensus 274 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-~~~~~SpDG~~ia~~~ 351 (429)
T PRK01742 274 IYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-YSAQISADGKTLVMIN 351 (429)
T ss_pred EEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-CCccCCCCCCEEEEEc
Confidence 55666555 445566777788999999999766554 57888888765422 122222222 4578999999888777
Q ss_pred CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEEC--CCCcEEEEeecCCCCCCceEEEE
Q 023822 181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS--FRGTLLSTYNVKPVSRNSTLEAS 258 (276)
Q Consensus 181 d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~~~~v~~~~ 258 (276)
...+.+||+.+++.. ... ... ....+.|+|+|++|++++.++.+.+|++ .+|+.+..+. .+.+.+...+
T Consensus 352 ~~~i~~~Dl~~g~~~---~lt-~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~---~~~g~~~~p~ 422 (429)
T PRK01742 352 GDNVVKQDLTSGSTE---VLS-STF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP---GSDGQVKFPA 422 (429)
T ss_pred CCCEEEEECCCCCeE---Eec-CCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc---CCCCCCCCcc
Confidence 556777999875531 111 111 2356789999999999999998888875 4688888887 5778888999
Q ss_pred ECCC
Q 023822 259 FSPE 262 (276)
Q Consensus 259 ~s~~ 262 (276)
|+|-
T Consensus 423 wsp~ 426 (429)
T PRK01742 423 WSPY 426 (429)
T ss_pred cCCC
Confidence 9985
No 170
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.3e-21 Score=146.26 Aligned_cols=188 Identities=16% Similarity=0.229 Sum_probs=149.8
Q ss_pred EEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE
Q 023822 80 DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159 (276)
Q Consensus 80 ~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 159 (276)
..++|++++..+++++. ||.+++|+..+...+.....|...|.++.|+||++.|++-+.| ..++|+.+++..+...
T Consensus 148 k~vaf~~~gs~latgg~---dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGT---DGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccc---cceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 68999999999999999 9999999988888888888899999999999999999999999 8999999999666655
Q ss_pred ee----cCCCeeEecCCC---c--EEEEee-CCeEEEEecccCCCCC-eeeeeecCCCCCceEEEECCCCcEEEEeecCC
Q 023822 160 RV----QGRPAAAYDDQG---L--VFAVAF-GGYIRMFDARKYEKGP-FDIFSVGGDISDANVVKFSNDGRLMLLTTMEG 228 (276)
Q Consensus 160 ~~----~~~~~~~~~~~~---~--~l~~~~-d~~i~~~d~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 228 (276)
.. .....+.|+.++ . +++... .+.|+.||+...+... ............|++++.+++|++++.|+.||
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 21 123466777666 2 333333 4788888876544321 11222223345799999999999999999999
Q ss_pred cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822 229 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP 273 (276)
Q Consensus 229 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 273 (276)
.|.|++..+.+.++-.+. .|...|+.+.|+||.+++++-+.|-
T Consensus 304 sVai~~~~~lq~~~~vk~--aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKE--AHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred cEEEEEeceeeeeEeehh--hheeeeeeEEEcCCcCcccccccCC
Confidence 999999998888877764 6889999999999999998876654
No 171
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.6e-20 Score=141.86 Aligned_cols=239 Identities=14% Similarity=0.192 Sum_probs=175.9
Q ss_pred eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC------Ceeeeeee-eeeeceEEEEEeccCCeEEEeccCCCC
Q 023822 28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA------ATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWD 100 (276)
Q Consensus 28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~d 100 (276)
+.+.+|.+.|+++.|+.++++|++|+.|..+++|+++. .+++.... .|...|.+++|...+..+++|.. +
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~---~ 126 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGER---W 126 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCC---c
Confidence 44678999999999999999999999999999999863 34554443 34578999999999999999988 9
Q ss_pred CceEEEEccCCceeeeecc--cCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce-eeeeE----eecCCCeeEecCCC
Q 023822 101 ESLRLLSLHDNKYLRYFKG--HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLL----RVQGRPAAAYDDQG 173 (276)
Q Consensus 101 ~~i~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~----~~~~~~~~~~~~~~ 173 (276)
++|...|+++.+.+..+.. ..+.|..+..+|..+.|++.+.++.|.+||.+... ....+ .......+.|+|..
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 9999999999888776652 23489999999999999999999999999999765 33333 22334578888865
Q ss_pred -cEEEEee-CCeEEEEecccCCCCCe----------------------------------------------eeeeecCC
Q 023822 174 -LVFAVAF-GGYIRMFDARKYEKGPF----------------------------------------------DIFSVGGD 205 (276)
Q Consensus 174 -~~l~~~~-d~~i~~~d~~~~~~~~~----------------------------------------------~~~~~~~~ 205 (276)
.++++.. .+-+.+||.+......+ .++.....
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N 286 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN 286 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC
Confidence 4555555 68899999886431100 01111101
Q ss_pred ------CCCceEEEECCCCcEEEEeecCCcEEEEECCCC-----------------------cEEEEeecCCCCCCceEE
Q 023822 206 ------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-----------------------TLLSTYNVKPVSRNSTLE 256 (276)
Q Consensus 206 ------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------------------~~~~~~~~~~~~~~~v~~ 256 (276)
...+.+++|-.+- -+++|+.+-.|++|.+... +.+..++ +|.+-++.
T Consensus 287 ~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLr---GHRSv~NQ 362 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLR---GHRSVPNQ 362 (609)
T ss_pred CCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEe---cccccccc
Confidence 1134455565443 4889999999999987421 1223344 79999999
Q ss_pred EEECCCCcEEEEecCCC
Q 023822 257 ASFSPEGMFVISGRVSP 273 (276)
Q Consensus 257 ~~~s~~g~~l~~~~~dg 273 (276)
+.|+|...+|++.+-..
T Consensus 363 VRF~~H~~~l~SSGVE~ 379 (609)
T KOG4227|consen 363 VRFSQHNNLLVSSGVEN 379 (609)
T ss_pred eeecCCcceEeccchhh
Confidence 99999999888877543
No 172
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.3e-19 Score=132.47 Aligned_cols=224 Identities=15% Similarity=0.149 Sum_probs=164.1
Q ss_pred HHHhhccccceeeccCCCcEEEEEEcC--CCCEEEEeecCCeEEEEEccC---------CeeeeeeeeeeeceEEEEEec
Q 023822 18 EEILQSMEVGMSFRDYNGRISSMDFHK--SSSYLVTASDDESIRLYDVTA---------ATCLKTINSKKYGVDLVCFTS 86 (276)
Q Consensus 18 ~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~ 86 (276)
.....++......+.|.+.|..+.|.+ -|+.+|+++.|+++.||.-.. .....++......|+++.|.|
T Consensus 43 ~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP 122 (361)
T KOG2445|consen 43 TSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAP 122 (361)
T ss_pred cCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecc
Confidence 344466788888999999999999965 589999999999999997521 123445566678899999999
Q ss_pred c--CCeEEEeccCCCCCceEEEEccCCce------eeeec-------ccCcceEEEEeccC---CCEEEEeeCC-----C
Q 023822 87 H--PTTVIYSSKNGWDESLRLLSLHDNKY------LRYFK-------GHHDRVVSLSLCSS---KDCFISGSLD-----R 143 (276)
Q Consensus 87 ~--~~~l~~~~~~~~d~~i~~~d~~~~~~------~~~~~-------~~~~~i~~~~~~~~---~~~l~~~~~d-----~ 143 (276)
. |-.+++++. ||.++||+....-. ...++ .+..+..|+.|+|. ..+|+.|+.+ +
T Consensus 123 ~hlGLklA~~~a---DG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~ 199 (361)
T KOG2445|consen 123 KHLGLKLAAASA---DGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLN 199 (361)
T ss_pred hhcceEEEEecc---CcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCcccc
Confidence 5 556777777 99999998654322 12222 35567789999974 4578888765 4
Q ss_pred eEEEEeccCce----eeeeE--eecCCCeeEecCCC----cEEEEee-CCeEEEEecccCC----------------CCC
Q 023822 144 TVLLWDQRAEK----CQGLL--RVQGRPAAAYDDQG----LVFAVAF-GGYIRMFDARKYE----------------KGP 196 (276)
Q Consensus 144 ~i~iwd~~~~~----~~~~~--~~~~~~~~~~~~~~----~~l~~~~-d~~i~~~d~~~~~----------------~~~ 196 (276)
.++||...... .+..+ +..+++.++|.|.- .++++++ || |+||.++... .+.
T Consensus 200 ~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v 278 (361)
T KOG2445|consen 200 KVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPV 278 (361)
T ss_pred ceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccce
Confidence 78888765432 22233 56678899999963 6777777 78 9999998421 111
Q ss_pred eeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC---CCcEEEEee
Q 023822 197 FDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF---RGTLLSTYN 245 (276)
Q Consensus 197 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~ 245 (276)
..+..+..|..+|..+.|+-.|..|++.+.||.||+|... ..++...+.
T Consensus 279 ~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~ 330 (361)
T KOG2445|consen 279 EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLK 330 (361)
T ss_pred EEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEe
Confidence 2234477899999999999999999999999999999753 234555554
No 173
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.87 E-value=5.8e-21 Score=152.25 Aligned_cols=202 Identities=16% Similarity=0.223 Sum_probs=156.0
Q ss_pred CCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCC-------eeeeeeeeeeeceEEEEEecc-CCeEEEeccCCCCCceE
Q 023822 34 NGRISSMDFHK-SSSYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLR 104 (276)
Q Consensus 34 ~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~ 104 (276)
...|+.+.|.| |...||+++.||.|++|.+..+ .+...+..|...|+.+.|+|- ...|++++. |-+|+
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy---d~Ti~ 703 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASY---DSTIE 703 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhc---cceee
Confidence 45799999999 8889999999999999998743 345667889999999999995 456777777 99999
Q ss_pred EEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE----eecCCCeeEecCCCcEEEEee
Q 023822 105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL----RVQGRPAAAYDDQGLVFAVAF 180 (276)
Q Consensus 105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~ 180 (276)
+||+.+++....+.+|.+.|..++|+|+|+.+++.+.||+|++|+.++.+....- .......+.|.-+|+++++..
T Consensus 704 lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~G 783 (1012)
T KOG1445|consen 704 LWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVG 783 (1012)
T ss_pred eeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEec
Confidence 9999999999999999999999999999999999999999999998876533222 112233677888887766554
Q ss_pred -----CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcEEEEECCCCc
Q 023822 181 -----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGT 239 (276)
Q Consensus 181 -----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~ 239 (276)
+.+|.+||.++....++....+.....+ .--.+.+|. -++++|-.|..|.+|.+-...
T Consensus 784 fdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~-LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 784 FDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSP-LVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred ccccchhhhhhhhhhhccCCcceeeeecccCcc-ccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 3789999998866555554444333221 122345554 456777789999999975443
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=2e-18 Score=141.18 Aligned_cols=237 Identities=26% Similarity=0.429 Sum_probs=188.0
Q ss_pred eeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe-eeeeeeeeee-ceEEEEE-eccCCeEEEeccCCCCCceEE
Q 023822 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-CLKTINSKKY-GVDLVCF-TSHPTTVIYSSKNGWDESLRL 105 (276)
Q Consensus 29 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~-~v~~~~~-~~~~~~l~~~~~~~~d~~i~~ 105 (276)
.+..|...+.++.+.+.+..++.++.|+.+.+|+...+. ....+..... .+..+.+ .+++..++.... ..++.+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~ 138 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS-SLDGTVKL 138 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccC-CCCccEEE
Confidence 467899999999999999999999999999999998876 6666665433 6777777 777773333322 12889999
Q ss_pred EEccC-CceeeeecccCcceEEEEeccCCCEEEEeeC-CCeEEEEeccCceeeeeE--eecCCCeeEecCCCc-EEEE-e
Q 023822 106 LSLHD-NKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGL-VFAV-A 179 (276)
Q Consensus 106 ~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~-~l~~-~ 179 (276)
|+... ......+..|...|..++|+|++..+++++. |+.+++|++........+ +...+..++++|++. ++++ +
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 99998 7778888899999999999999998888886 999999999987777666 456688999999997 5555 3
Q ss_pred eCCeEEEEecccCCCCCeeee-eecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcE-EEEeecCCCCCCceEEE
Q 023822 180 FGGYIRMFDARKYEKGPFDIF-SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEA 257 (276)
Q Consensus 180 ~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~ 257 (276)
.|+.|++||...+.. .. .+..|.... ...|+|++.++++++.|+.+++|+...... +..+. .|...+.++
T Consensus 219 ~d~~i~~wd~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~v~~~ 290 (466)
T COG2319 219 SDGTIRLWDLSTGKL----LRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS---GHSSSVLSV 290 (466)
T ss_pred CCCcEEEEECCCCcE----EeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEe---cCCccEEEE
Confidence 499999998774332 22 455565554 338999998899999999999999987665 44443 578999999
Q ss_pred EECCCCcEEEEecCCCC
Q 023822 258 SFSPEGMFVISGRVSPF 274 (276)
Q Consensus 258 ~~s~~g~~l~~~~~dg~ 274 (276)
.|+|++..+++++.|+.
T Consensus 291 ~~~~~~~~~~~~~~d~~ 307 (466)
T COG2319 291 AFSPDGKLLASGSSDGT 307 (466)
T ss_pred EECCCCCEEEEeeCCCc
Confidence 99999988888888754
No 175
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=7.4e-21 Score=149.11 Aligned_cols=227 Identities=19% Similarity=0.285 Sum_probs=168.6
Q ss_pred ehHHHhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeee-eeeeeceEEEEEecc--CCeEE
Q 023822 16 LSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI-NSKKYGVDLVCFTSH--PTTVI 92 (276)
Q Consensus 16 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~ 92 (276)
..+..++.+...+.|.||++.|+|++|+.+|.+|++|+.|-.+.|||....+++..+ .+|...|.++.|-|. ++.++
T Consensus 32 ~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~ 111 (758)
T KOG1310|consen 32 GNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVL 111 (758)
T ss_pred cccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEE
Confidence 344556778888899999999999999999999999999999999999887777766 578899999999984 45666
Q ss_pred EeccCCCCCceEEEEccC----------CceeeeecccCcceEEEEeccCC-CEEEEeeCCCeEEEEeccCceeee-e--
Q 023822 93 YSSKNGWDESLRLLSLHD----------NKYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQG-L-- 158 (276)
Q Consensus 93 ~~~~~~~d~~i~~~d~~~----------~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~-~-- 158 (276)
++.. |..|+++|+.. .+....+..|...|..++-.|++ +.+.++++||+|+-||++....-. .
T Consensus 112 sgAg---Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~ 188 (758)
T KOG1310|consen 112 SGAG---DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDED 188 (758)
T ss_pred eccC---cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccc
Confidence 6666 99999999974 23445567899999999999988 689999999999999999742111 1
Q ss_pred ----E-----eecCCCeeEecCCC-cEEEEee-CCeEEEEecccCCC-----------CC----eeeeeecCCC------
Q 023822 159 ----L-----RVQGRPAAAYDDQG-LVFAVAF-GGYIRMFDARKYEK-----------GP----FDIFSVGGDI------ 206 (276)
Q Consensus 159 ----~-----~~~~~~~~~~~~~~-~~l~~~~-d~~i~~~d~~~~~~-----------~~----~~~~~~~~~~------ 206 (276)
+ ..-...++.++|.. .+|++|. |-..++||.+...+ ++ ...+-.++|.
T Consensus 189 ~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn 268 (758)
T KOG1310|consen 189 CPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGN 268 (758)
T ss_pred ccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccc
Confidence 1 11224488899876 5566655 89999999543211 01 0011111111
Q ss_pred -----CCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822 207 -----SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN 245 (276)
Q Consensus 207 -----~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 245 (276)
..++.++|+|+|..|++.-..-.|+++|+..++....+.
T Consensus 269 ~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 269 LDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred cccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 124568899999877776556689999998887765554
No 176
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.86 E-value=4.3e-19 Score=130.40 Aligned_cols=232 Identities=13% Similarity=0.165 Sum_probs=166.9
Q ss_pred cEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCC----CCCceEEEEccCC
Q 023822 36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG----WDESLRLLSLHDN 111 (276)
Q Consensus 36 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~----~d~~i~~~d~~~~ 111 (276)
...+++|+.|..-+++|..+| .+||+.+.-+.....+.+.+.+.-+...-..++++..+.++ ....|.|||=...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 345599999999999987776 99999886544333333322222222222445555444321 1357999997777
Q ss_pred ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEecc-CceeeeeEee--cCCCeeEecCC--CcEEEEee--CCeE
Q 023822 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR-AEKCQGLLRV--QGRPAAAYDDQ--GLVFAVAF--GGYI 184 (276)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~--~~~~~~~~~~~--~~~l~~~~--d~~i 184 (276)
+++.++. ...+|.++.+.++ .+++.- .++|++|... +.+.++.+.. .+.-.+++.|. ..+|+.-+ -|+|
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred cEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 7777776 6788999999764 455544 6789999987 5566665522 12224444443 35555555 5999
Q ss_pred EEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCc-EEEEECCCCcEEEEeecCCCCCCceEEEEECCCC
Q 023822 185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH-IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 263 (276)
Q Consensus 185 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 263 (276)
++-|+...+.. .......|.+.|.+++++-+|..+|++|..|+ |||||..+|+++.+++... ....|.+++|||++
T Consensus 162 Qi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 162 QIVDLASTKPN--APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-DRADIYCIAFSPNS 238 (346)
T ss_pred EEEEhhhcCcC--CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-chheEEEEEeCCCc
Confidence 99999875542 23456789999999999999999999999997 8999999999999998543 55789999999999
Q ss_pred cEEEEecCCCCC
Q 023822 264 MFVISGRVSPFS 275 (276)
Q Consensus 264 ~~l~~~~~dg~v 275 (276)
.+||++|+.||+
T Consensus 239 s~LavsSdKgTl 250 (346)
T KOG2111|consen 239 SWLAVSSDKGTL 250 (346)
T ss_pred cEEEEEcCCCeE
Confidence 999999999986
No 177
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.86 E-value=3.3e-20 Score=136.27 Aligned_cols=199 Identities=15% Similarity=0.150 Sum_probs=158.4
Q ss_pred eeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc---eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEE
Q 023822 72 INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK---YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLW 148 (276)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 148 (276)
+.....+|+|.+|+++...++++.. ...|.||...... ...+++.|...|+.++|+|..+.|++|+.|..-++|
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~---~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPN---NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccC---CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence 3334568999999999999999987 8899999987654 577889999999999999999999999999999999
Q ss_pred eccC-ceeeeeE----eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEE
Q 023822 149 DQRA-EKCQGLL----RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLML 222 (276)
Q Consensus 149 d~~~-~~~~~~~----~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 222 (276)
.... ++-..++ ......++.|+|.++.+++++ ...|.+|-++.....-........+.+.|+++.|+|++-+|+
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla 162 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA 162 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence 9843 3333332 344577999999998888888 688899988765432222223345567899999999999999
Q ss_pred EeecCCcEEEEECC------------------CCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCCC
Q 023822 223 LTTMEGHIHVLDSF------------------RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFSS 276 (276)
Q Consensus 223 ~~~~dg~i~i~d~~------------------~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~vs 276 (276)
+|+.|+.+|+|... -|+++.++. ...+.+..+.|+|+|..|+-.+.|++|+
T Consensus 163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~---~~ggwvh~v~fs~sG~~lawv~Hds~v~ 231 (361)
T KOG1523|consen 163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS---SSGGWVHGVLFSPSGNRLAWVGHDSTVS 231 (361)
T ss_pred ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc---cCCCceeeeEeCCCCCEeeEecCCCceE
Confidence 99999999999742 133344443 3678899999999999999999998874
No 178
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.86 E-value=9.7e-21 Score=148.07 Aligned_cols=189 Identities=16% Similarity=0.231 Sum_probs=154.6
Q ss_pred cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (276)
Q Consensus 24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i 103 (276)
.+..+.+..|.+.|.|-.|+|||.-|+++++||.|++|. .+|....++-....+|.|++|.|+.+.++.+. .+.+
T Consensus 94 ~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~----g~h~ 168 (737)
T KOG1524|consen 94 ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ----GGHI 168 (737)
T ss_pred chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec----CCeE
Confidence 344566788999999999999999999999999999998 46666556666677899999999999988887 6788
Q ss_pred EEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEeeCC
Q 023822 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAFGG 182 (276)
Q Consensus 104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~d~ 182 (276)
.+=.+..+..+-.++.|.+-|.++.|++.++++++|++|-+.++||-........- +..++.+++|+|+ +.++.++-+
T Consensus 169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n 247 (737)
T KOG1524|consen 169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN 247 (737)
T ss_pred EEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeee
Confidence 88888777777889999999999999999999999999999999997654433333 7888999999999 666665544
Q ss_pred eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEE
Q 023822 183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 233 (276)
Q Consensus 183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 233 (276)
++++= ....+.|..++||+||..++.|...|.+.+-
T Consensus 248 t~R~~---------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 248 TARFS---------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeec---------------CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 44411 1233578889999999999999998876653
No 179
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.8e-20 Score=142.31 Aligned_cols=193 Identities=16% Similarity=0.167 Sum_probs=155.0
Q ss_pred EEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeee
Q 023822 38 SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF 117 (276)
Q Consensus 38 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~ 117 (276)
.+++|+.+|..|++++.||++|||+..+...+.....|...|.++.|+||++.|++.+. | ..+||+.+++..+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~---d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGA---D-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecC---C-ceEEEEeccCchhhhc
Confidence 78999999999999999999999999888888888889999999999999999999997 7 9999999999766655
Q ss_pred cc--cCcceEEEEeccCC---CE--EEEeeCCCeEEEEeccCcee------eeeE-eecCCCeeEecCCCcEEEEee-CC
Q 023822 118 KG--HHDRVVSLSLCSSK---DC--FISGSLDRTVLLWDQRAEKC------QGLL-RVQGRPAAAYDDQGLVFAVAF-GG 182 (276)
Q Consensus 118 ~~--~~~~i~~~~~~~~~---~~--l~~~~~d~~i~iwd~~~~~~------~~~~-~~~~~~~~~~~~~~~~l~~~~-d~ 182 (276)
.. .+.....+.|+.++ .+ ++....-+.|+.||+....- .+.+ ....+.+++.+++|++++.++ ||
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 42 23346677888776 33 33333456677777653322 1112 445788999999999999999 99
Q ss_pred eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCC
Q 023822 183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR 237 (276)
Q Consensus 183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 237 (276)
.|.+++..+.+. ..+....|...|+.+.|+|+.+++++.+.|....+..+.-
T Consensus 304 sVai~~~~~lq~---~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 304 SVAIYDAKSLQR---LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cEEEEEeceeee---eEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999987553 2445567888999999999999999999999888887643
No 180
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.3e-18 Score=123.52 Aligned_cols=220 Identities=18% Similarity=0.296 Sum_probs=162.3
Q ss_pred cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCee------eeee--ee-----eeeceEEEEEeccCCeEE
Q 023822 26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC------LKTI--NS-----KKYGVDLVCFTSHPTTVI 92 (276)
Q Consensus 26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~--~~-----~~~~v~~~~~~~~~~~l~ 92 (276)
++...++|.++|+.++|. ..+|++|+ ||.|+=|....... +-+. .. .-..|+++...|..+.++
T Consensus 54 ~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~ 130 (325)
T KOG0649|consen 54 KIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL 130 (325)
T ss_pred ceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE
Confidence 344558999999999998 35677765 59999888753321 1111 11 123588999999888888
Q ss_pred EeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecC---------
Q 023822 93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--------- 163 (276)
Q Consensus 93 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------- 163 (276)
.++. |+.++-||+++|+..+++++|++.|.++.--.....+++|++||++++||++++++++.+....
T Consensus 131 ~AgG---D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~ 207 (325)
T KOG0649|consen 131 FAGG---DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW 207 (325)
T ss_pred EecC---CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence 8876 9999999999999999999999999999886666689999999999999999999998883221
Q ss_pred -CCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEE
Q 023822 164 -RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS 242 (276)
Q Consensus 164 -~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 242 (276)
....+..-+..+++++....+.+|.++..+. ..++.++ .++..+.|..+ .+++++..+.|.-|.+ +|.+..
T Consensus 208 g~wigala~~edWlvCGgGp~lslwhLrsse~--t~vfpip---a~v~~v~F~~d--~vl~~G~g~~v~~~~l-~Gvl~a 279 (325)
T KOG0649|consen 208 GKWIGALAVNEDWLVCGGGPKLSLWHLRSSES--TCVFPIP---ARVHLVDFVDD--CVLIGGEGNHVQSYTL-NGVLQA 279 (325)
T ss_pred CceeEEEeccCceEEecCCCceeEEeccCCCc--eEEEecc---cceeEeeeecc--eEEEeccccceeeeee-ccEEEE
Confidence 1135666777899999999999999998654 3344544 35777888654 5777888888999985 455555
Q ss_pred EeecCCCCCCceEEEEECCC
Q 023822 243 TYNVKPVSRNSTLEASFSPE 262 (276)
Q Consensus 243 ~~~~~~~~~~~v~~~~~s~~ 262 (276)
... ......++..|+..
T Consensus 280 ~ip---~~s~~c~s~s~~~~ 296 (325)
T KOG0649|consen 280 NIP---VESTACYSASWQTS 296 (325)
T ss_pred ecc---CCccceeeecccCC
Confidence 444 23334455555433
No 181
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.86 E-value=2.6e-19 Score=131.60 Aligned_cols=228 Identities=14% Similarity=0.163 Sum_probs=176.7
Q ss_pred eccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC---eeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822 30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 106 (276)
Q Consensus 30 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~ 106 (276)
+.--..+|+|.+|++|...+|.+.....|.||..... +...++..|...|+.+.|+|..+.|++++. |..-++|
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~---drnayVw 82 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH---DRNAYVW 82 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccC---CCCcccc
Confidence 3344679999999999999999999999999998754 467888999999999999999999999998 9999999
Q ss_pred EccCC---ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCcee------eeeEeecCCCeeEecCCCcEEE
Q 023822 107 SLHDN---KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC------QGLLRVQGRPAAAYDDQGLVFA 177 (276)
Q Consensus 107 d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~l~ 177 (276)
....+ ++...+..++...+++.|+|.++.|++|+.-..|.+|-++...- ++.-....+.++.|+|++-+++
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla 162 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA 162 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence 98433 45556677999999999999999999999999999988775432 2222455678999999999998
Q ss_pred Eee-CCeEEEEecccC--C----------CCCee--eeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCc-EE
Q 023822 178 VAF-GGYIRMFDARKY--E----------KGPFD--IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT-LL 241 (276)
Q Consensus 178 ~~~-d~~i~~~d~~~~--~----------~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~ 241 (276)
.++ |+..++|..--. + +.++- +.......+.+..+.|+|+|..|+-.+.|..+.+-|..... .+
T Consensus 163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v 242 (361)
T KOG1523|consen 163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERV 242 (361)
T ss_pred ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhc
Confidence 888 999999874211 1 01111 12222456789999999999999999999999999976554 33
Q ss_pred EEeecCCCCCCceEEEEECCCC
Q 023822 242 STYNVKPVSRNSTLEASFSPEG 263 (276)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~s~~g 263 (276)
.... ...-+..++.|-.+.
T Consensus 243 ~~~~---~~~lP~ls~~~ise~ 261 (361)
T KOG1523|consen 243 QSVA---TAQLPLLSVSWISEN 261 (361)
T ss_pred cchh---hccCCceeeEeecCC
Confidence 3333 223566667665443
No 182
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.8e-19 Score=131.79 Aligned_cols=189 Identities=13% Similarity=0.168 Sum_probs=145.9
Q ss_pred eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEE
Q 023822 28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 107 (276)
Q Consensus 28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d 107 (276)
..+..|..+|.|+.+++....+++|+.|++|++||.........+...+ .|.++.. .+..|++|+. +..+.+||
T Consensus 88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~---~r~v~iyD 161 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTS---DRKVLIYD 161 (323)
T ss_pred eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeec---CceEEEEE
Confidence 4466799999999999988899999999999999988655555554433 7887777 6778899887 99999999
Q ss_pred ccCCceeeee--cccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce----eeeeE-----------eecCCCeeEec
Q 023822 108 LHDNKYLRYF--KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK----CQGLL-----------RVQGRPAAAYD 170 (276)
Q Consensus 108 ~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~-----------~~~~~~~~~~~ 170 (276)
+++.....+. ...+-.+.++++-|++.-++.++-||+|.+=.++..+ ....+ ...+++.++|+
T Consensus 162 LRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh 241 (323)
T KOG1036|consen 162 LRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH 241 (323)
T ss_pred cccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec
Confidence 9987654322 2244578999999988889999999998876655441 11122 23457799999
Q ss_pred CCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec
Q 023822 171 DQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM 226 (276)
Q Consensus 171 ~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 226 (276)
|-...|+++. ||.|.+||+.+.+. +..+......|.+++|+.+|..||.++.
T Consensus 242 p~~~tfaTgGsDG~V~~Wd~~~rKr----l~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 242 PIHGTFATGGSDGIVNIWDLFNRKR----LKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cccceEEecCCCceEEEccCcchhh----hhhccCCCCceEEEEeccCCCeEEEEec
Confidence 9866666665 99999999988664 5555555667999999999999999873
No 183
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=1.1e-17 Score=136.87 Aligned_cols=242 Identities=25% Similarity=0.401 Sum_probs=183.8
Q ss_pred ceeeccCC-CcEEEEEE-cCCCC-EEEEeec-CCeEEEEEccC-CeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822 27 GMSFRDYN-GRISSMDF-HKSSS-YLVTASD-DESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101 (276)
Q Consensus 27 ~~~~~~h~-~~v~~~~~-~~~~~-~l~~~~~-d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~ 101 (276)
...+.++. ..+..+.+ ++++. .++..+. |+.+.+|+... ......+..|...+..+.|+|++..++.+.. .++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~ 178 (466)
T COG2319 101 IKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS--LDG 178 (466)
T ss_pred EEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC--CCC
Confidence 34444433 36777777 78777 5555444 99999999987 7888889999999999999999998777763 289
Q ss_pred ceEEEEccCCceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeee-eEeecCCC-eeEecCCCcEEEE
Q 023822 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQG-LLRVQGRP-AAAYDDQGLVFAV 178 (276)
Q Consensus 102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~-~~~~~~~~~~l~~ 178 (276)
.+++|++..++.+..+..|...+.+++|+|++. .+++++.|+.|++||...+.... .+..+... ...|++++.+++.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (466)
T COG2319 179 TIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLAS 258 (466)
T ss_pred ceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEE
Confidence 999999999888889999999999999999998 55565999999999988776666 34222211 3379999866665
Q ss_pred ee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEE
Q 023822 179 AF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 257 (276)
Q Consensus 179 ~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 257 (276)
+. |+.+++|+.+.... . ......|...+.++.|+|++..+++++.|+.+.+|+..+........ ...|...+..+
T Consensus 259 ~~~d~~~~~~~~~~~~~-~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 334 (466)
T COG2319 259 GSSDGTIRLWDLRSSSS-L--LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSSL 334 (466)
T ss_pred ecCCCcEEEeeecCCCc-E--EEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEEE
Confidence 55 99999999987554 1 22225678899999999988888888888889999988887766654 11366679999
Q ss_pred EECCCCcEEEEe-cCCCC
Q 023822 258 SFSPEGMFVISG-RVSPF 274 (276)
Q Consensus 258 ~~s~~g~~l~~~-~~dg~ 274 (276)
.|.+++..++.+ ..|+.
T Consensus 335 ~~~~~~~~~~~~~~~d~~ 352 (466)
T COG2319 335 SFSPDGSLLVSGGSDDGT 352 (466)
T ss_pred EECCCCCEEEEeecCCCc
Confidence 994343455555 55543
No 184
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2e-19 Score=138.06 Aligned_cols=190 Identities=15% Similarity=0.174 Sum_probs=154.9
Q ss_pred eeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC--ceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccC
Q 023822 76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN--KYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRA 152 (276)
Q Consensus 76 ~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~ 152 (276)
.++|+++.|+|....+++++. |+.+++|.+... ..++.+.-...+|.+.+|.|+|. .+++++....++.||+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~---d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGL---DGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred cCCceEEEecCCCceEEEecC---CCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence 468999999999999999998 999999988643 34556655678899999999999 899999999999999998
Q ss_pred ceeeeeEe-----ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec
Q 023822 153 EKCQGLLR-----VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM 226 (276)
Q Consensus 153 ~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 226 (276)
.+..+.-. .........++++.+++... .|.|.+....+++. +..+ ...+.+..++|+.+++.|++.+.
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el----i~s~-KieG~v~~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL----ITSF-KIEGVVSDFTFSSDSKELLASGG 364 (514)
T ss_pred cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh----hhee-eeccEEeeEEEecCCcEEEEEcC
Confidence 87655442 22345778899998888777 89999999888653 2222 23457899999999999999999
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 227 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 227 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
+|.|.+||++...+++++.... .-.-++++.+++|.|||+|+..|+|
T Consensus 365 ~GeV~v~nl~~~~~~~rf~D~G--~v~gts~~~S~ng~ylA~GS~~GiV 411 (514)
T KOG2055|consen 365 TGEVYVWNLRQNSCLHRFVDDG--SVHGTSLCISLNGSYLATGSDSGIV 411 (514)
T ss_pred CceEEEEecCCcceEEEEeecC--ccceeeeeecCCCceEEeccCcceE
Confidence 9999999999999999997321 1233567888999999999999986
No 185
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=8.9e-20 Score=132.39 Aligned_cols=209 Identities=16% Similarity=0.233 Sum_probs=157.6
Q ss_pred ccccceeec-cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCee-eeeee-----eeeeceEEEEEec--cCCeEEE
Q 023822 23 SMEVGMSFR-DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC-LKTIN-----SKKYGVDLVCFTS--HPTTVIY 93 (276)
Q Consensus 23 ~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~~ 93 (276)
+++.+..+. .+-+.|.|+.|.|++..+++-. |..|.+|+++.+.. ++.+. .+....++-+|+| ++..+++
T Consensus 111 tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t 189 (370)
T KOG1007|consen 111 TLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT 189 (370)
T ss_pred hhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE
Confidence 356666665 5677999999999999998875 78899999987765 44432 2344577889998 6777777
Q ss_pred eccCCCCCceEEEEccCCceeeee-cccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCce-eeeeE--eecCCCeeE
Q 023822 94 SSKNGWDESLRLLSLHDNKYLRYF-KGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEK-CQGLL--RVQGRPAAA 168 (276)
Q Consensus 94 ~~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~-~~~~~--~~~~~~~~~ 168 (276)
.+ |+++..||+++.+....+ ..|...|..+.|+|+.+ +|++|+.||.|++||.|..+ ++..+ |.+-+.++.
T Consensus 190 t~----d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR 265 (370)
T KOG1007|consen 190 TS----DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR 265 (370)
T ss_pred eC----CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEE
Confidence 76 999999999988776655 46888899999999877 78999999999999999654 45555 555677999
Q ss_pred ecCCC--cEEEEeeCCeEEEEecccCCCC----------------------Ce---eeeeecCCCCCceEEEECCCCcE-
Q 023822 169 YDDQG--LVFAVAFGGYIRMFDARKYEKG----------------------PF---DIFSVGGDISDANVVKFSNDGRL- 220 (276)
Q Consensus 169 ~~~~~--~~l~~~~d~~i~~~d~~~~~~~----------------------~~---~~~~~~~~~~~i~~~~~~~~~~~- 220 (276)
|+|.. .+|.+++|..|.+|-...-... ++ .+..+..|...|.+++||.-..+
T Consensus 266 fn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWi 345 (370)
T KOG1007|consen 266 FNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWI 345 (370)
T ss_pred ecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCee
Confidence 99854 4555556999999976442210 01 12345568889999999987665
Q ss_pred EEEeecCCcEEEEECC
Q 023822 221 MLLTTMEGHIHVLDSF 236 (276)
Q Consensus 221 l~~~~~dg~i~i~d~~ 236 (276)
+|+-+.||++.|=.+.
T Consensus 346 FASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 346 FASLSYDGRVIISSVP 361 (370)
T ss_pred EEEeccCceEEeecCC
Confidence 5667999999876653
No 186
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.85 E-value=2.6e-18 Score=140.16 Aligned_cols=222 Identities=9% Similarity=0.081 Sum_probs=152.3
Q ss_pred eeccCCCcEEEEEEcCCCCEEEEee---cCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822 29 SFRDYNGRISSMDFHKSSSYLVTAS---DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 105 (276)
Q Consensus 29 ~~~~h~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~ 105 (276)
.+..+...+.+.+|+|||+.|+..+ .+..+.+|++.+++.... ......+....|+|+++.|+.......+..|++
T Consensus 193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~ 271 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 271 (429)
T ss_pred EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence 3445667899999999999998654 245799999988754332 222334557899999999987643211346999
Q ss_pred EEccCCceeeeecccCcceEEEEeccCCCEEEEeeCC-C--eEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-
Q 023822 106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD-R--TVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF- 180 (276)
Q Consensus 106 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~- 180 (276)
||+.+++..+ +..+...+....|+|+|+.|+..+.+ + .|+++|+.+++..... .........|+|+|+.++...
T Consensus 272 ~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 272 MDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred EECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEc
Confidence 9998876544 33345567889999999988776654 4 4555577665443322 223345789999998887655
Q ss_pred -C--CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCc---EEEEECCCCcEEEEeecCCCCCCce
Q 023822 181 -G--GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH---IHVLDSFRGTLLSTYNVKPVSRNST 254 (276)
Q Consensus 181 -d--~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~~~~~~~~~v 254 (276)
+ ..|.+||+.+++. ..+... .......|+|||++|+.++.++. +.++++ +|+....+. .+.+.+
T Consensus 351 ~~g~~~I~~~dl~~g~~-----~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~---~~~~~~ 420 (429)
T PRK03629 351 NGGQQHIAKQDLATGGV-----QVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLP---ATDGQV 420 (429)
T ss_pred cCCCceEEEEECCCCCe-----EEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECc---cCCCCc
Confidence 2 4688899877542 111111 12346789999999999887764 677776 566666676 567788
Q ss_pred EEEEECCC
Q 023822 255 LEASFSPE 262 (276)
Q Consensus 255 ~~~~~s~~ 262 (276)
...+|+|-
T Consensus 421 ~~p~Wsp~ 428 (429)
T PRK03629 421 KFPAWSPY 428 (429)
T ss_pred CCcccCCC
Confidence 88999983
No 187
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.84 E-value=4.4e-20 Score=144.45 Aligned_cols=195 Identities=12% Similarity=0.166 Sum_probs=143.0
Q ss_pred cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceE-EEEEe-------ccCCeEEEeccCCCCCce
Q 023822 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD-LVCFT-------SHPTTVIYSSKNGWDESL 103 (276)
Q Consensus 32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~-------~~~~~l~~~~~~~~d~~i 103 (276)
.|...|.|+.|+.+...+.+++.+..+.-||+. ..........+.-+. .+..- .....++.++. ||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~-~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~---DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVS-RDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSN---DGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeeccc-chhhhhhhCCcccCCccccccccccCCCCCcceEEEEcC---CceE
Confidence 467778899999887766666554444444543 322222221111111 11111 12345666666 9999
Q ss_pred EEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEeeC
Q 023822 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAFG 181 (276)
Q Consensus 104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~d 181 (276)
.+.+ +.++....+..|.+.+.+-.|+|+|.-|+++++||.|++|. +++-...++ ....+.|++|.|+..-++.+..
T Consensus 88 ~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g 165 (737)
T KOG1524|consen 88 VILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG 165 (737)
T ss_pred EEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC
Confidence 9887 45677778889999999999999999999999999999998 444444444 5567899999999988888888
Q ss_pred CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC
Q 023822 182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF 236 (276)
Q Consensus 182 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 236 (276)
+.+.+=-+..... +.....|.+-|.++.|+|...++++|++|-..++||..
T Consensus 166 ~h~~IKpL~~n~k----~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 166 GHISIKPLAANSK----IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ 216 (737)
T ss_pred CeEEEeecccccc----eeEEeccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence 8888877765443 67778899999999999999999999999999999953
No 188
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.84 E-value=1.6e-20 Score=144.30 Aligned_cols=217 Identities=14% Similarity=0.162 Sum_probs=184.1
Q ss_pred CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822 35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL 114 (276)
Q Consensus 35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~ 114 (276)
-.-+.+.++.+|..|+.|+.-|.+-.+|..+++....+...+ .|.++.|..+.++++++. ...+++||- .|..+
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E-tv~Dv~~LHneq~~AVAQ----K~y~yvYD~-~GtEl 203 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME-TVRDVTFLHNEQFFAVAQ----KKYVYVYDN-NGTEL 203 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhh-hhhhhhhhcchHHHHhhh----hceEEEecC-CCcEE
Confidence 345679999999999999999999999999999988887644 799999999999999887 789999994 56667
Q ss_pred eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEEEEeccc
Q 023822 115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARK 191 (276)
Q Consensus 115 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~ 191 (276)
..++.| ..|..+.|.|..-+|++++..|.++.-|+..++.+..+ .......+.-+|-+-++-.|. .|+|.+|....
T Consensus 204 HClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 204 HCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred eehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence 777754 46889999999999999999999999999999999888 344566788889888887777 89999999987
Q ss_pred CCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEE
Q 023822 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV 266 (276)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 266 (276)
.+. +..+-.|.++|.++++.++|+|+++++.|..++|||+++...+.++.. ..+...+++|..|.+.
T Consensus 283 keP----LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t----p~~a~~ls~SqkglLA 349 (545)
T KOG1272|consen 283 KEP----LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT----PHPASNLSLSQKGLLA 349 (545)
T ss_pred cch----HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec----CCCcccccccccccee
Confidence 554 566677999999999999999999999999999999999888877762 4556678888776443
No 189
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=5.3e-20 Score=144.44 Aligned_cols=217 Identities=14% Similarity=0.120 Sum_probs=162.3
Q ss_pred hhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC----------eeeeeeeeeeeceEEEEEeccCCe
Q 023822 21 LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA----------TCLKTINSKKYGVDLVCFTSHPTT 90 (276)
Q Consensus 21 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~ 90 (276)
...++++.+|++|.++|.|+++.+++..+++|+-||+|+.|++... .....+.+|...++.+++++....
T Consensus 331 ~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~ 410 (577)
T KOG0642|consen 331 EKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR 410 (577)
T ss_pred ccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc
Confidence 3567889999999999999999999999999999999999976421 234567899999999999999999
Q ss_pred EEEeccCCCCCceEEEEccCCceeeeeccc--CcceEEEEeccCC-CEEEEeeCCCeEEEEeccCceeeeeEe-------
Q 023822 91 VIYSSKNGWDESLRLLSLHDNKYLRYFKGH--HDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLR------- 160 (276)
Q Consensus 91 l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~------- 160 (276)
|++++. ||++++|+.....+ .++... .+...++++-... .+.++...-+.--++++........+.
T Consensus 411 Llscs~---DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~ 486 (577)
T KOG0642|consen 411 LLSCSS---DGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGP 486 (577)
T ss_pred eeeecC---CceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcc
Confidence 999998 99999999876665 333222 2233555554332 122222222333334444433333331
Q ss_pred --ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCC
Q 023822 161 --VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR 237 (276)
Q Consensus 161 --~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 237 (276)
...+..+.++|.+.+..++. |+.|+++|..+++. ++....|...++++++.|+|.+|++++.|+.+++|.+..
T Consensus 487 ~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~----l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 487 RRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI----LHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred cccCccceEEecCCCCeeEecccCCceeccccccccc----chheeeccceecceeecCCCceEEeecCCceeehhhccc
Confidence 12345677888877766666 89999999998776 777778888999999999999999999999999999987
Q ss_pred CcEEEEee
Q 023822 238 GTLLSTYN 245 (276)
Q Consensus 238 ~~~~~~~~ 245 (276)
..++....
T Consensus 563 k~~~~es~ 570 (577)
T KOG0642|consen 563 KTCVLEST 570 (577)
T ss_pred hheeeccc
Confidence 77776665
No 190
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.84 E-value=1.2e-18 Score=142.31 Aligned_cols=207 Identities=12% Similarity=0.140 Sum_probs=141.4
Q ss_pred CCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCC
Q 023822 55 DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD 134 (276)
Q Consensus 55 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 134 (276)
+..|++||..... ...+..+...+....|+|+++.++.++..+.+..|++||+.+++... +....+....++|+|||+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCC
Confidence 4689999986544 45566677789999999999999988753224579999998875422 222223344689999999
Q ss_pred EEEEee-CCCeEEE--EeccCceeeeeE-eecCCCeeEecCCCcEEEEee--CCeEEEEecccCCCCCeeeeeecCCCCC
Q 023822 135 CFISGS-LDRTVLL--WDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDISD 208 (276)
Q Consensus 135 ~l~~~~-~d~~i~i--wd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 208 (276)
.|+.++ .+|.+.| ||+.+++..... +........|+|+++.++..+ ++...+|++....... .. + .+..
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~--l-~~~~- 335 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SL--V-GGRG- 335 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EE--e-cCCC-
Confidence 888764 6776555 566655543332 223456899999998766555 5788888876433211 11 1 2222
Q ss_pred ceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 209 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 209 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
....|+|+|++|++.+.++ +.+||+.+++...... .. ....+.|+|||++|++++.+|..
T Consensus 336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~---~~--~~~~~~~sPdG~~i~~~s~~g~~ 395 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS---TF--LDESPSISPNGIMIIYSSTQGLG 395 (429)
T ss_pred -CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC---CC--CCCCceECCCCCEEEEEEcCCCc
Confidence 4578999999998887765 6669998887653322 11 23467899999999999888754
No 191
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.83 E-value=6.9e-20 Score=146.99 Aligned_cols=188 Identities=17% Similarity=0.243 Sum_probs=157.7
Q ss_pred ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee
Q 023822 78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG 157 (276)
Q Consensus 78 ~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 157 (276)
.|..++|-|||..++.+. +..+.+||.+.|..++++++|.+.|.+++|+.||+.+++|+.|..|.+|.-.-....+
T Consensus 14 ci~d~afkPDGsqL~lAA----g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA----GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK 89 (1081)
T ss_pred chheeEECCCCceEEEec----CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee
Confidence 689999999999999988 7899999999999999999999999999999999999999999999999977666666
Q ss_pred eEeecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCC
Q 023822 158 LLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR 237 (276)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 237 (276)
.-|...+.|+.|+|-.+.+++++=...-+|....... ........+.+++|..||++++.|-.+|+|.+-+ .+
T Consensus 90 YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V------~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~ 162 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSV------SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN-KN 162 (1081)
T ss_pred eccCCeeeEeecCchHHHhhhcchhhccccChhhhhH------HhhhhheeEEEeeecCCCcEEEEeccCceEEeec-CC
Confidence 6688889999999999999998866677888765221 1112334788999999999999999999999997 56
Q ss_pred CcEEEEeecCCCCCCceEEEEECCCC-----cEEEEecCCCCCC
Q 023822 238 GTLLSTYNVKPVSRNSTLEASFSPEG-----MFVISGRVSPFSS 276 (276)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~s~~g-----~~l~~~~~dg~vs 276 (276)
++..-.+....+...+|++++|+|.. ..+++..++.|.|
T Consensus 163 gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLS 206 (1081)
T KOG1538|consen 163 GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLS 206 (1081)
T ss_pred CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeE
Confidence 77666666555688999999999963 4677777766543
No 192
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=8.9e-19 Score=132.55 Aligned_cols=189 Identities=22% Similarity=0.302 Sum_probs=145.9
Q ss_pred CCcEEEEEEcCCCC-EEEEeecCCeEEEEEccCCe---------eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822 34 NGRISSMDFHKSSS-YLVTASDDESIRLYDVTAAT---------CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (276)
Q Consensus 34 ~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i 103 (276)
..+|.++.|.++.. .||||+.|..|++|-++.+. .+..+..|...|+++.|+|++..+++++. +|.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D---~g~v 89 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGD---GGEV 89 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCC---CceE
Confidence 46899999998765 99999999999999886432 23456788999999999999999999998 9999
Q ss_pred EEEEcc--------C--------CceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCC
Q 023822 104 RLLSLH--------D--------NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRP 165 (276)
Q Consensus 104 ~~~d~~--------~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~ 165 (276)
.+|... + ......+.+|...|..++|+|+++++++++.|..+++||+..++....+ +.+.+.
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ 169 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccc
Confidence 999865 2 1234456789999999999999999999999999999999999998888 666678
Q ss_pred eeEecCCCcEEEEee-CCeEEEEecccCCCC-------------------CeeeeeecCCCCCceEEEECCCCcEEEEee
Q 023822 166 AAAYDDQGLVFAVAF-GGYIRMFDARKYEKG-------------------PFDIFSVGGDISDANVVKFSNDGRLMLLTT 225 (276)
Q Consensus 166 ~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~-------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 225 (276)
.++|.|-+++++.-+ |...+.+.+...+.. ...++.-.....-...++|+|+|.+|++.+
T Consensus 170 gvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 170 GVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred eeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 899999988877665 666666655432210 011111111122345688999999988754
No 193
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.1e-17 Score=119.00 Aligned_cols=219 Identities=10% Similarity=0.062 Sum_probs=160.7
Q ss_pred cEEEEEEcCCCCEEEEeecCCeEEEEEccC---------C-eeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822 36 RISSMDFHKSSSYLVTASDDESIRLYDVTA---------A-TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 105 (276)
Q Consensus 36 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---------~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~ 105 (276)
.|.+-+++|.+++|++|..+|.|.+..+++ + ..+...++|++++..++|. ..+|++++ ||.|+-
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g----dG~V~g 85 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG----DGLVYG 85 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc----CceEEE
Confidence 466678999999999999999999998863 1 2445568999999999997 56777777 999999
Q ss_pred EEccCCce------eeee--ccc-----CcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee--cCCCeeEe-
Q 023822 106 LSLHDNKY------LRYF--KGH-----HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV--QGRPAAAY- 169 (276)
Q Consensus 106 ~d~~~~~~------~~~~--~~~-----~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~- 169 (276)
|..+.... +... .-| -..|++|...|..+-++.++.|+.++.||+++++..+.++. ..+.++..
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R 165 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGR 165 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeec
Confidence 98764322 1111 112 23689999999888788888999999999999999999944 44556666
Q ss_pred cCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecC--------CCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEE
Q 023822 170 DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGG--------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL 241 (276)
Q Consensus 170 ~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 241 (276)
+..++++.++.||++++||.++.+... ...... -...|.+++- +..+|++|+ .-.+.+|+++..++.
T Consensus 166 ~~~~qilsG~EDGtvRvWd~kt~k~v~--~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t 240 (325)
T KOG0649|consen 166 NANGQILSGAEDGTVRVWDTKTQKHVS--MIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSEST 240 (325)
T ss_pred ccCcceeecCCCccEEEEeccccceeE--EeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCce
Confidence 677889988889999999999976421 111111 1223445554 445676664 456999999999999
Q ss_pred EEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822 242 STYNVKPVSRNSTLEASFSPEGMFVISGRV 271 (276)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 271 (276)
..+. -..++..+.|..| .++++++
T Consensus 241 ~vfp----ipa~v~~v~F~~d--~vl~~G~ 264 (325)
T KOG0649|consen 241 CVFP----IPARVHLVDFVDD--CVLIGGE 264 (325)
T ss_pred EEEe----cccceeEeeeecc--eEEEecc
Confidence 8887 5677888888665 4555553
No 194
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.82 E-value=2.6e-18 Score=140.45 Aligned_cols=241 Identities=12% Similarity=0.130 Sum_probs=172.4
Q ss_pred ccceeeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCee--eee----eeeeeeceEEEEEeccCCe--EEEec
Q 023822 25 EVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATC--LKT----INSKKYGVDLVCFTSHPTT--VIYSS 95 (276)
Q Consensus 25 ~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~--~~~----~~~~~~~v~~~~~~~~~~~--l~~~~ 95 (276)
.+...+.. ..+|+|+.|+| +.+++|.|+.+|.|.+||+..+.. ... ...|..++..+.|..+... +++++
T Consensus 234 ~Pe~~~~~-~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s 312 (555)
T KOG1587|consen 234 TPELVLES-PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS 312 (555)
T ss_pred CceEEEec-CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe
Confidence 33344433 67899999999 677888999999999999987654 222 2457789999999876555 88888
Q ss_pred cCCCCCceEEEEccCCce-ee-----eec------ccCcceEEEEeccC-CCEEEEeeCCCeEEEEecc---Cce-----
Q 023822 96 KNGWDESLRLLSLHDNKY-LR-----YFK------GHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQR---AEK----- 154 (276)
Q Consensus 96 ~~~~d~~i~~~d~~~~~~-~~-----~~~------~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~---~~~----- 154 (276)
. ||.|..|+++.-.. .. ... .-...+++++|.+. .+.|+.|+.+|.|.--+.. ...
T Consensus 313 s---DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~ 389 (555)
T KOG1587|consen 313 S---DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYK 389 (555)
T ss_pred c---CCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccc
Confidence 8 99999998765432 11 111 11235789999884 4589999999988773322 222
Q ss_pred --eeeeEeecCCCeeEecCCC-cEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcE
Q 023822 155 --CQGLLRVQGRPAAAYDDQG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHI 230 (276)
Q Consensus 155 --~~~~~~~~~~~~~~~~~~~-~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i 230 (276)
.....+...+..+.++|=+ +++.++.|.++++|....... .++.+..+...+++++|||.. ..++++..||.+
T Consensus 390 ~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~---Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l 466 (555)
T KOG1587|consen 390 GHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIAS---PLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNL 466 (555)
T ss_pred ccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCC---cchhhhhccceeeeeEEcCcCceEEEEEcCCCce
Confidence 1112266677889999866 455555599999999873222 145555666679999999975 567778889999
Q ss_pred EEEECCCCcE--EEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 231 HVLDSFRGTL--LSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 231 ~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
.+||+..... +.... ......+.+.|+++|+.|+.|...|.+
T Consensus 467 ~iWDLl~~~~~Pv~s~~---~~~~~l~~~~~s~~g~~lavGd~~G~~ 510 (555)
T KOG1587|consen 467 DIWDLLQDDEEPVLSQK---VCSPALTRVRWSPNGKLLAVGDANGTT 510 (555)
T ss_pred ehhhhhccccCCccccc---ccccccceeecCCCCcEEEEecCCCcE
Confidence 9999865443 33333 245667788999999999999999965
No 195
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=4.5e-19 Score=140.39 Aligned_cols=202 Identities=16% Similarity=0.227 Sum_probs=168.0
Q ss_pred eeeccCCCcEEEEEEcCCCCEEEEeecC---CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822 28 MSFRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104 (276)
Q Consensus 28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~ 104 (276)
...-.|..+|..+.|+..|.||++...+ ..|.|.++...+...-|....+.+.++.|+|...++++++ ...|+
T Consensus 515 ~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT----q~~vR 590 (733)
T KOG0650|consen 515 CIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT----QRSVR 590 (733)
T ss_pred EEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe----ccceE
Confidence 4445689999999999999999987653 4789999988777667767778899999999999999998 78999
Q ss_pred EEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc-eeeeeE--eecCCCeeEecCCCcEEEEee-
Q 023822 105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE-KCQGLL--RVQGRPAAAYDDQGLVFAVAF- 180 (276)
Q Consensus 105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~--~~~~~~~~~~~~~~~~l~~~~- 180 (276)
+||+..++.+..+......|..|+.+|.|..|+.++.|+.+..+|+.-. ++.+.+ |...++.++|++.-.++++++
T Consensus 591 iYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sd 670 (733)
T KOG0650|consen 591 IYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSD 670 (733)
T ss_pred EEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecC
Confidence 9999998888888888889999999999999999999999999999854 445554 677789999999999999999
Q ss_pred CCeEEEEecccCC-----CCCeeeeeecCCCCC----ceEEEECCCCcEEEEeecCCcEEEE
Q 023822 181 GGYIRMFDARKYE-----KGPFDIFSVGGDISD----ANVVKFSNDGRLMLLTTMEGHIHVL 233 (276)
Q Consensus 181 d~~i~~~d~~~~~-----~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~~dg~i~i~ 233 (276)
|+.+.||.-.-.. .....+..+.+|... |..+.|+|...+|++++.||+|++|
T Consensus 671 Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 671 DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 6999988643211 112234445566544 8888999999999999999999998
No 196
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=3.7e-17 Score=122.59 Aligned_cols=206 Identities=14% Similarity=0.196 Sum_probs=153.6
Q ss_pred CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeee---eeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC
Q 023822 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS---KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD 110 (276)
Q Consensus 34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~ 110 (276)
..+|.++.++. +.|+++-++ .|+|||+++.+.+.++.. +...+.++++++.+.+++.-+... .|.|.+||..+
T Consensus 87 pt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t-~GdV~l~d~~n 162 (391)
T KOG2110|consen 87 PTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT-SGDVVLFDTIN 162 (391)
T ss_pred CCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC-CceEEEEEccc
Confidence 45677888875 466666555 499999999999888754 344566666666777888765432 79999999999
Q ss_pred CceeeeecccCcceEEEEeccCCCEEEEeeCCCe-EEEEeccCceeeeeEeec----CCCeeEecCCCcEEEEee-CCeE
Q 023822 111 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT-VLLWDQRAEKCQGLLRVQ----GRPAAAYDDQGLVFAVAF-GGYI 184 (276)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~-d~~i 184 (276)
-+++..+..|.+.+.+++|+++|.+||+++..|+ ||++.+.+++.+..++.+ .+.+++|+|++.+|++++ .++|
T Consensus 163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTV 242 (391)
T KOG2110|consen 163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETV 242 (391)
T ss_pred ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeE
Confidence 9999999999999999999999999999999997 789999999999998543 356899999999999888 6999
Q ss_pred EEEecccCCCCCee-----------------------------------eeeecCCCCCc-eEEEEC--CCCcEEEEeec
Q 023822 185 RMFDARKYEKGPFD-----------------------------------IFSVGGDISDA-NVVKFS--NDGRLMLLTTM 226 (276)
Q Consensus 185 ~~~d~~~~~~~~~~-----------------------------------~~~~~~~~~~i-~~~~~~--~~~~~l~~~~~ 226 (276)
.+|.+......+.. ...+ ..... ..+.+. +....+..++.
T Consensus 243 HiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l--~~s~~~~~~~l~~~~~~~~v~vas~ 320 (391)
T KOG2110|consen 243 HIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKL--PESGRKNICSLSSIQKIPRVLVASY 320 (391)
T ss_pred EEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEc--cCCCccceEEeeccCCCCEEEEEEc
Confidence 99998754311100 0000 01111 223444 36678899999
Q ss_pred CCcEEEEECCC--CcEEEEee
Q 023822 227 EGHIHVLDSFR--GTLLSTYN 245 (276)
Q Consensus 227 dg~i~i~d~~~--~~~~~~~~ 245 (276)
||.++.|.+.- |.....++
T Consensus 321 dG~~y~y~l~~~~gGec~lik 341 (391)
T KOG2110|consen 321 DGHLYSYRLPPKEGGECALIK 341 (391)
T ss_pred CCeEEEEEcCCCCCceeEEEE
Confidence 99999998653 44434443
No 197
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=3.7e-17 Score=134.06 Aligned_cols=223 Identities=10% Similarity=0.065 Sum_probs=154.1
Q ss_pred ceeeccCCCcEEEEEEcCCCCEEEEeec---CCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822 27 GMSFRDYNGRISSMDFHKSSSYLVTASD---DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (276)
Q Consensus 27 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i 103 (276)
.+.+..|...+.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+....|+|+++.++..........|
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 272 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI 272 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence 3456678889999999999999987763 468999999887653 344455567889999999988765432224558
Q ss_pred EEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeC-CC--eEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEe
Q 023822 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVA 179 (276)
Q Consensus 104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~ 179 (276)
++||+.+++. ..+..+........|+||++.++..+. +| .|+++|+..++..... .........|+|+|+.++..
T Consensus 273 y~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 273 YTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred EEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEE
Confidence 8889887765 445556666778999999998887664 33 6888898776554433 22335568899999888776
Q ss_pred e-C---CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC------CcEEEEECCCCcEEEEeecCCC
Q 023822 180 F-G---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME------GHIHVLDSFRGTLLSTYNVKPV 249 (276)
Q Consensus 180 ~-d---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~ 249 (276)
. + ..|.+||+..... .... ....+....|+|||+.|+..+.+ ..+.++|+..+.. ..+.
T Consensus 352 ~~~~~~~~i~~~d~~~~~~---~~lt---~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~---- 420 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGSGE---RILT---SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP---- 420 (435)
T ss_pred EcCCCceEEEEEECCCCce---Eecc---CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc----
Confidence 5 2 3688888754332 1111 12246678999999988776543 2588888765544 4443
Q ss_pred CCCceEEEEECCC
Q 023822 250 SRNSTLEASFSPE 262 (276)
Q Consensus 250 ~~~~v~~~~~s~~ 262 (276)
..+.+...+|+|-
T Consensus 421 ~~~~~~~p~Wsp~ 433 (435)
T PRK05137 421 TPGDASDPAWSPL 433 (435)
T ss_pred CCCCccCcccCCC
Confidence 2344667788873
No 198
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=2.5e-17 Score=134.94 Aligned_cols=223 Identities=13% Similarity=0.086 Sum_probs=152.0
Q ss_pred ceeeccCCCcEEEEEEcCCCCEEEEeec---CCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822 27 GMSFRDYNGRISSMDFHKSSSYLVTASD---DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (276)
Q Consensus 27 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i 103 (276)
.+.+..|...+.+.+|+|||+.|+..+. +..|++||+.+++... +....+......|+|+++.++.......+..|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceE
Confidence 3445667788999999999999998764 3469999998776533 33334445678999999988765432114579
Q ss_pred EEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeC-CCe--EEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEe
Q 023822 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DRT--VLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVA 179 (276)
Q Consensus 104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~--i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~ 179 (276)
++||+.+++.. .+..+.......+|+||++.|+..+. +|. |+++|+.+++..... ........+|+|+|+.++..
T Consensus 275 y~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 275 YVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMV 353 (433)
T ss_pred EEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence 99999887643 45555555677899999998877664 444 777777666543322 22334468999999888776
Q ss_pred e-C---CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC---CcEEEEECCCCcEEEEeecCCCCCC
Q 023822 180 F-G---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRN 252 (276)
Q Consensus 180 ~-d---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~ 252 (276)
. + ..|.+||+.+++.. .+. +........|+|||++++..+.+ +.|.++++. +.....+. .+.+
T Consensus 354 ~~~~~~~~I~v~d~~~g~~~-----~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~---~~~g 423 (433)
T PRK04922 354 HGSGGQYRIAVMDLSTGSVR-----TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLV---SADG 423 (433)
T ss_pred ECCCCceeEEEEECCCCCeE-----ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcc---cCCC
Confidence 5 2 36999998765421 121 11234467999999988877653 458888874 45555555 3456
Q ss_pred ceEEEEECC
Q 023822 253 STLEASFSP 261 (276)
Q Consensus 253 ~v~~~~~s~ 261 (276)
.+...+|+|
T Consensus 424 ~~~~p~wsp 432 (433)
T PRK04922 424 EVREPAWSP 432 (433)
T ss_pred CCCCCccCC
Confidence 677788887
No 199
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=3.7e-17 Score=134.07 Aligned_cols=205 Identities=13% Similarity=0.090 Sum_probs=143.3
Q ss_pred CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCE
Q 023822 56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135 (276)
Q Consensus 56 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 135 (276)
..|.++|.. +.....+..+...+...+|+|+++.|+..+..+.+..|.+||+.+++.. .+..+.+.+...+|+|||+.
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 478889875 4445566677778999999999999988865333678999999887653 44456667788999999997
Q ss_pred EE-EeeCCCe--EEEEeccCceeeeeEee-cCCCeeEecCCCcEEEEeeC----CeEEEEecccCCCCCeeeeeecCCCC
Q 023822 136 FI-SGSLDRT--VLLWDQRAEKCQGLLRV-QGRPAAAYDDQGLVFAVAFG----GYIRMFDARKYEKGPFDIFSVGGDIS 207 (276)
Q Consensus 136 l~-~~~~d~~--i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~ 207 (276)
|+ +.+.++. |++||+.+++....... .......|+|+++.++..++ ..|+++|+..... ..+.....
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-----~~lt~~~~ 334 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-----RRISFGGG 334 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-----EEeecCCC
Confidence 65 5555554 78889888765443322 23456899999987776663 3688888765432 11222234
Q ss_pred CceEEEECCCCcEEEEeecC---CcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822 208 DANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS 272 (276)
Q Consensus 208 ~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 272 (276)
.+....|+|+|++|+..+.+ ..|.+||+.++.. ..+. ....+....|+|||++|+..+.+
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt----~~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT----SGFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc----CCCCCCCCeECCCCCEEEEEEcc
Confidence 46678999999999887643 3688889765543 3343 22346678999999988776543
No 200
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.81 E-value=1.5e-16 Score=126.26 Aligned_cols=217 Identities=10% Similarity=0.128 Sum_probs=144.1
Q ss_pred EEeecCCeEEEEEccC-Ce--eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC-Cce--eeeecccCcc
Q 023822 50 VTASDDESIRLYDVTA-AT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKY--LRYFKGHHDR 123 (276)
Q Consensus 50 ~~~~~d~~i~iwd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~-~~~--~~~~~~~~~~ 123 (276)
++...++.|.+|++.+ ++ .+..+.. .+....++++|++++|+++... ++.|.+|++.. ++. ..... ....
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~--~~~i~~~~~~~~g~l~~~~~~~-~~~~ 81 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRP--EFRVLSYRIADDGALTFAAESP-LPGS 81 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECC--CCcEEEEEECCCCceEEeeeec-CCCC
Confidence 3446789999999964 33 3344432 3457789999999999887643 78999999873 332 22222 2335
Q ss_pred eEEEEeccCCCEEEEeeC-CCeEEEEeccCce----eeeeEe-ecCCCeeEecCCCcEEEEee--CCeEEEEecccCCCC
Q 023822 124 VVSLSLCSSKDCFISGSL-DRTVLLWDQRAEK----CQGLLR-VQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKG 195 (276)
Q Consensus 124 i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~----~~~~~~-~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~ 195 (276)
...++++|+++++++++. ++.|.+|++.+.. ....+. ......++++|+++++.++. ++.|.+||+.+....
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 678999999998887765 7899999997432 222221 23356788999998776555 699999999763211
Q ss_pred -Ce--eeeeecCCCCCceEEEECCCCcEEEEeec-CCcEEEEECCC--Cc--EEEEeecCCC---CCCceEEEEECCCCc
Q 023822 196 -PF--DIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFR--GT--LLSTYNVKPV---SRNSTLEASFSPEGM 264 (276)
Q Consensus 196 -~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~--~~--~~~~~~~~~~---~~~~v~~~~~s~~g~ 264 (276)
+. ...... .......++|+|+|++++++.. ++.|.+|++.. ++ .+..+...+. .......+.++|+|+
T Consensus 162 ~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~ 240 (330)
T PRK11028 162 VAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR 240 (330)
T ss_pred cccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence 00 011111 1235678999999999988876 89999999973 33 2333332111 112334688999999
Q ss_pred EEEEecC
Q 023822 265 FVISGRV 271 (276)
Q Consensus 265 ~l~~~~~ 271 (276)
+|+++..
T Consensus 241 ~lyv~~~ 247 (330)
T PRK11028 241 HLYACDR 247 (330)
T ss_pred EEEEecC
Confidence 9998854
No 201
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.4e-18 Score=128.90 Aligned_cols=166 Identities=21% Similarity=0.240 Sum_probs=131.1
Q ss_pred CeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEecc--CCCEEEEeeCCCeEEEEeccCceeeeeE---eec-
Q 023822 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQ- 162 (276)
Q Consensus 89 ~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~- 162 (276)
..++++.. .|.|++||..+++.+..+++++..++.+.|.. ....+.+|+.||+|++||+|.......+ ...
T Consensus 41 ~~vav~lS---ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~ 117 (376)
T KOG1188|consen 41 TAVAVSLS---NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG 117 (376)
T ss_pred eeEEEEec---CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC
Confidence 45666666 99999999999999999999999999999977 4568999999999999999988766655 222
Q ss_pred -CCCeeEecCCCcEEEEee-----CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC-CcEEEEeecCCcEEEEEC
Q 023822 163 -GRPAAAYDDQGLVFAVAF-----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDS 235 (276)
Q Consensus 163 -~~~~~~~~~~~~~l~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~ 235 (276)
+..+++..-.+++++++. +..+.+||+|..++. ...-...|...|+++.|+|. .++|++||.||.|.+||+
T Consensus 118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~--l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL--LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred CcceEeeccCcCCeEEeccccccCceEEEEEEeccccch--hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 223445555778888887 578999999986542 12234578889999999996 478999999999999998
Q ss_pred CCCc----EEEEeecCCCCCCceEEEEECCCC
Q 023822 236 FRGT----LLSTYNVKPVSRNSTLEASFSPEG 263 (276)
Q Consensus 236 ~~~~----~~~~~~~~~~~~~~v~~~~~s~~g 263 (276)
+... ++..+. +...|..+.|..++
T Consensus 196 ~~d~EeDaL~~viN----~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 196 KKDNEEDALLHVIN----HGSSIHLIGWLSKK 223 (376)
T ss_pred CCCcchhhHHHhhc----ccceeeeeeeecCC
Confidence 7542 233343 77889999999888
No 202
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=2.4e-18 Score=129.96 Aligned_cols=204 Identities=15% Similarity=0.175 Sum_probs=151.7
Q ss_pred cceeeeeehHHHhhccccceeeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEecc
Q 023822 9 EDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87 (276)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 87 (276)
...+.++.........+++..|.+|...|--++|+| ..+.|++++.|.+|.+||+.+|+.+.++. |...|.++.|+.+
T Consensus 106 v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~d 184 (472)
T KOG0303|consen 106 VMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRD 184 (472)
T ss_pred EEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccC
Confidence 334555555555566688999999999999999999 45688999999999999999999888887 9999999999999
Q ss_pred CCeEEEeccCCCCCceEEEEccCCceeeeecccCcc-eEEEEeccCCCEEEEee---CCCeEEEEeccCceeeee---E-
Q 023822 88 PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDR-VVSLSLCSSKDCFISGS---LDRTVLLWDQRAEKCQGL---L- 159 (276)
Q Consensus 88 ~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~---~- 159 (276)
|..+++.+. |..|++||.++++.+..-.+|.+. -...-|-.++..+.+|- .+..+-+||...-+.... +
T Consensus 185 Gs~l~Ttck---DKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD 261 (472)
T KOG0303|consen 185 GSLLCTTCK---DKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD 261 (472)
T ss_pred Cceeeeecc---cceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec
Confidence 999999999 999999999999999888777652 34455777888555543 367899999775443322 2
Q ss_pred eecCCCeeEecCCCcEEEEee--CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC
Q 023822 160 RVQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND 217 (276)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 217 (276)
...++.--.|+++..++..+. |+.|+.|.+..... .+..........+-..+.|-|.
T Consensus 262 tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P-~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 262 TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP-FVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc-eeEEecccccCCcccccccccc
Confidence 233444556778887766655 99999999987432 1222222233345556666664
No 203
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.80 E-value=7.9e-19 Score=129.83 Aligned_cols=216 Identities=13% Similarity=0.190 Sum_probs=158.7
Q ss_pred EEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeec
Q 023822 39 SMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK 118 (276)
Q Consensus 39 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~ 118 (276)
-..|||+|+++|+++.- .+.|-|.++-+..+.+.. -..|.-+.|..+..+++.+... ++.|.+|++...+-...+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk--~~~vqvwsl~Qpew~ckId 88 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYK--DPKVQVWSLVQPEWYCKID 88 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeec--cceEEEEEeecceeEEEec
Confidence 36899999999999765 788889887776655544 3468889999999888877663 8899999999998888898
Q ss_pred ccCcceEEEEeccCCCE-EEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEeeCC----eEEEEecccC
Q 023822 119 GHHDRVVSLSLCSSKDC-FISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAFGG----YIRMFDARKY 192 (276)
Q Consensus 119 ~~~~~i~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~d~----~i~~~d~~~~ 192 (276)
.....+.+++|+|+|+. |.+..-|-+|.+|.+.+.+....- ....+..++|+|+|++.+..+.. .+.+..-+..
T Consensus 89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence 88999999999999974 556666889999999998876655 44456789999999999988721 1222111110
Q ss_pred CCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822 193 EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS 272 (276)
Q Consensus 193 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 272 (276)
. ....+....-..+.+.|+|||..|+ +||.--.-.+..++ -.-.+..++|+|.+++|+.|+.|
T Consensus 169 ~----ll~~f~~dT~DltgieWsPdg~~la---------Vwd~~Leykv~aYe----~~lG~k~v~wsP~~qflavGsyD 231 (447)
T KOG4497|consen 169 I----LLKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLEYKVYAYE----RGLGLKFVEWSPCNQFLAVGSYD 231 (447)
T ss_pred H----HHHhcCCCcccccCceECCCCcEEE---------Eecchhhheeeeee----eccceeEEEeccccceEEeeccc
Confidence 0 0122233344677899999998776 55533222222333 23567889999999999999999
Q ss_pred CCC
Q 023822 273 PFS 275 (276)
Q Consensus 273 g~v 275 (276)
+.+
T Consensus 232 ~~l 234 (447)
T KOG4497|consen 232 QML 234 (447)
T ss_pred hhh
Confidence 864
No 204
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=4.6e-18 Score=142.78 Aligned_cols=238 Identities=17% Similarity=0.213 Sum_probs=166.7
Q ss_pred CCcEEEEEEcC--CCCEEEEeecCCeEEEEEcc-----CCeeeeeeee-------eeeceEEEEEeccCCeEEEeccCCC
Q 023822 34 NGRISSMDFHK--SSSYLVTASDDESIRLYDVT-----AATCLKTINS-------KKYGVDLVCFTSHPTTVIYSSKNGW 99 (276)
Q Consensus 34 ~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~-----~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~~~~ 99 (276)
...|+.+.+-. |..++++|+.||.|+||+-. +.+.+..+.+ ..+.-.-+.|.....+|++++.
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd--- 1185 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD--- 1185 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC---
Confidence 35688888865 55689999999999999743 2233332221 1222256788888888888886
Q ss_pred CCceEEEEccCCceeeeec-ccCcceEEEEecc-CCCEEEEeeCCCeEEEEeccCceee---eeE--eecC--CCeeEec
Q 023822 100 DESLRLLSLHDNKYLRYFK-GHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQ---GLL--RVQG--RPAAAYD 170 (276)
Q Consensus 100 d~~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~---~~~--~~~~--~~~~~~~ 170 (276)
-..|+|||......+..+. +....|+++.-+. .|+.+++|..||.|++||.|..... ... +... +..+.+.
T Consensus 1186 ~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq 1265 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQ 1265 (1387)
T ss_pred eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEee
Confidence 7899999999887776654 3344566665443 4689999999999999999865432 222 2222 6677777
Q ss_pred CCC--cEEEEeeCCeEEEEecccCCC-CCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC
Q 023822 171 DQG--LVFAVAFGGYIRMFDARKYEK-GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK 247 (276)
Q Consensus 171 ~~~--~~l~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 247 (276)
++| +++.++.+|.|++||+|.... ....+...-...+..+++..++....+|+|+. +.|+||++ .|+.+..++..
T Consensus 1266 ~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~-~G~~l~~~k~n 1343 (1387)
T KOG1517|consen 1266 RQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL-SGEQLNIIKYN 1343 (1387)
T ss_pred cCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEec-ChhhhcccccC
Confidence 765 456666699999999998422 21112111111235899999999999999988 89999996 45555555422
Q ss_pred C----CCCCceEEEEECCCCcEEEEecCCCCCC
Q 023822 248 P----VSRNSTLEASFSPEGMFVISGRVSPFSS 276 (276)
Q Consensus 248 ~----~~~~~v~~~~~s~~g~~l~~~~~dg~vs 276 (276)
+ ...+.+.+++|+|.--+||+|+.|.+|+
T Consensus 1344 ~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1344 PGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred cccccCcCCCcceeeecchhHhhhhccCCceEE
Confidence 2 1345679999999999999999999875
No 205
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=9.3e-17 Score=131.17 Aligned_cols=221 Identities=13% Similarity=0.112 Sum_probs=147.0
Q ss_pred eeeccCCCcEEEEEEcCCCCEEEEeecC---CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822 28 MSFRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104 (276)
Q Consensus 28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~ 104 (276)
+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+......|+|+++.++..... ++...
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~--~g~~~ 265 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSR--DGNSQ 265 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEcc--CCCce
Confidence 3455677889999999999999877643 469999998886543 33333456789999999998765332 56555
Q ss_pred EE--EccCCceeeeecccCcceEEEEeccCCCEEEEeeC-CCeEEEEec--cCceeeeeE-eecCCCeeEecCCCcEEEE
Q 023822 105 LL--SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQ--RAEKCQGLL-RVQGRPAAAYDDQGLVFAV 178 (276)
Q Consensus 105 ~~--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~--~~~~~~~~~-~~~~~~~~~~~~~~~~l~~ 178 (276)
+| |+..+. ...+..+........|+|||+.|+..+. ++...+|.+ .+++..... .........|+|+|+.++.
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~ 344 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAY 344 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEE
Confidence 55 454444 4455555556677899999998776554 455566654 444332222 2223446789999998876
Q ss_pred ee-CC---eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC---cEEEEECCCCcEEEEeecCCCCC
Q 023822 179 AF-GG---YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSR 251 (276)
Q Consensus 179 ~~-d~---~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~ 251 (276)
.. ++ .|.+||+.+++.. .+... .......|+|||+.|+.++.++ .+.+.+. +++....+. .+.
T Consensus 345 ~s~~~g~~~I~v~d~~~g~~~-----~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~---~~~ 414 (427)
T PRK02889 345 ISRVGGAFKLYVQDLATGQVT-----ALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLS---VQG 414 (427)
T ss_pred EEccCCcEEEEEEECCCCCeE-----EccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEee---cCC
Confidence 65 32 6999999875431 11111 2345689999999988877543 3666666 566666665 355
Q ss_pred CceEEEEECCC
Q 023822 252 NSTLEASFSPE 262 (276)
Q Consensus 252 ~~v~~~~~s~~ 262 (276)
+.+...+|+|-
T Consensus 415 g~~~~p~wsp~ 425 (427)
T PRK02889 415 GDVREPSWGPF 425 (427)
T ss_pred CCCCCCccCCC
Confidence 67778889874
No 206
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=1.2e-16 Score=130.40 Aligned_cols=207 Identities=11% Similarity=0.102 Sum_probs=140.0
Q ss_pred CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCE
Q 023822 56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135 (276)
Q Consensus 56 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 135 (276)
..|.+||.+.... +.+..+...+...+|+|+++.++..+..+.+..|.+|++.+++... +....+.+..+.|+|||+.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCE
Confidence 3788999865443 3444456689999999999999876543225689999998876433 2223344557899999998
Q ss_pred EEEe-eCCC--eEEEEeccCceeeeeEe-ecCCCeeEecCCCcEEEEeeC--C--eEEEEecccCCCCCeeeeeecCCCC
Q 023822 136 FISG-SLDR--TVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFAVAFG--G--YIRMFDARKYEKGPFDIFSVGGDIS 207 (276)
Q Consensus 136 l~~~-~~d~--~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~d--~--~i~~~d~~~~~~~~~~~~~~~~~~~ 207 (276)
|+.. +.+| .|++||+++++...... ........|+|+++.++..++ + .|+++|+.+++. ..+.....
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-----~~lt~~~~ 331 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-----QRITWEGS 331 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-----EEeecCCC
Confidence 7754 4444 59999998876654442 234567899999987776663 4 455556655332 12222233
Q ss_pred CceEEEECCCCcEEEEeecC---CcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCC
Q 023822 208 DANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPF 274 (276)
Q Consensus 208 ~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 274 (276)
......|+|+|++|+..+.+ ..|.+||+.+++.. .+.. . .......|+|||++|+.++.++.
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~--~--~~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD--T--FLDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC--C--CCCCCceECCCCCEEEEEEcCCC
Confidence 45678999999998876543 35889999888654 3331 1 12346789999999999888764
No 207
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.9e-17 Score=124.97 Aligned_cols=221 Identities=12% Similarity=0.101 Sum_probs=166.3
Q ss_pred eeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe----eeeeeeeeeeceEEEEEeccCCeEEE-eccCCCC--C
Q 023822 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT----CLKTINSKKYGVDLVCFTSHPTTVIY-SSKNGWD--E 101 (276)
Q Consensus 29 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~~d--~ 101 (276)
......++|..++.. ...|++|-.+|.+.+|..+.+. .+..+..+ .++..+.-++...++++ |+. . .
T Consensus 100 ~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGk---e~~n 173 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGK---ENIN 173 (412)
T ss_pred ccccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCch---hccc
Confidence 334445566666554 2467788889999999988443 33333333 45777777777766665 555 5 7
Q ss_pred ceEEEEccCCceeeeecccC---------cceEEEEeccC--CCEEEEeeCCCeEEEEeccCc-eeeeeE--eecCCCee
Q 023822 102 SLRLLSLHDNKYLRYFKGHH---------DRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAE-KCQGLL--RVQGRPAA 167 (276)
Q Consensus 102 ~i~~~d~~~~~~~~~~~~~~---------~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~-~~~~~~--~~~~~~~~ 167 (276)
.+.+||+++.+.+..-+.-+ -.++++.|-+. ...|++++.-+.+++||.+.+ +++..+ ...++.++
T Consensus 174 ~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~ 253 (412)
T KOG3881|consen 174 ELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST 253 (412)
T ss_pred ceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee
Confidence 89999999886655443222 24678889887 779999999999999999865 455555 66778899
Q ss_pred EecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeec
Q 023822 168 AYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV 246 (276)
Q Consensus 168 ~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 246 (276)
...|++++++++. -+.+..||++.++.. ...+.+-.+.++++..+|.++++++++-|..|||+|+++.+++....
T Consensus 254 ~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~---g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY- 329 (412)
T KOG3881|consen 254 GLTPSGNFIYTGNTKGQLAKFDLRGGKLL---GCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY- 329 (412)
T ss_pred eecCCCcEEEEecccchhheecccCceee---ccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-
Confidence 9999999998888 799999999986642 33366777899999999999999999999999999999988877665
Q ss_pred CCCCCCceEEEEECCC
Q 023822 247 KPVSRNSTLEASFSPE 262 (276)
Q Consensus 247 ~~~~~~~v~~~~~s~~ 262 (276)
....++.+-+.++
T Consensus 330 ---vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 330 ---VKSRLTFILLRDD 342 (412)
T ss_pred ---hhccccEEEecCC
Confidence 4566677777554
No 208
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=5.8e-17 Score=132.80 Aligned_cols=205 Identities=15% Similarity=0.126 Sum_probs=140.5
Q ss_pred CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCE
Q 023822 56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135 (276)
Q Consensus 56 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 135 (276)
..|.+||.. +.....+..+...+....|+|+++.++..+..+....|++||+.+++... +....+......|+|+|+.
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 468999975 44445555666789999999999999988753335679999998876533 3334455567899999997
Q ss_pred EE-EeeCCC--eEEEEeccCceeeeeEee-cCCCeeEecCCCcEEEEee--CC--eEEEEecccCCCCCeeeeeecCCCC
Q 023822 136 FI-SGSLDR--TVLLWDQRAEKCQGLLRV-QGRPAAAYDDQGLVFAVAF--GG--YIRMFDARKYEKGPFDIFSVGGDIS 207 (276)
Q Consensus 136 l~-~~~~d~--~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~--d~--~i~~~d~~~~~~~~~~~~~~~~~~~ 207 (276)
++ +.+.++ .|++||+.+++....... .......|+|+++.++..+ ++ .|+++|+.+++. ..... ...
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~---~~lt~--~g~ 336 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA---ERLTF--QGN 336 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEeec--CCC
Confidence 65 445555 599999988775443322 2235689999998877666 34 466667655432 11222 223
Q ss_pred CceEEEECCCCcEEEEeecCC---cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822 208 DANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS 272 (276)
Q Consensus 208 ~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 272 (276)
.....+|+|+|++++..+.++ .|.+||+.+++.. .+. +........|+|||++|+..+.+
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt----~~~~~~~p~~spdG~~i~~~s~~ 399 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT----PGSLDESPSFAPNGSMVLYATRE 399 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC----CCCCCCCceECCCCCEEEEEEec
Confidence 345689999999998865443 5999999887765 333 22234567999999988776654
No 209
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.8e-17 Score=121.83 Aligned_cols=225 Identities=14% Similarity=0.246 Sum_probs=155.0
Q ss_pred CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeee-eeeceEEEEEeccCC-eEEEeccCCCCCceEEEEccCC-
Q 023822 35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDN- 111 (276)
Q Consensus 35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~~~d~~~~- 111 (276)
..+..++|++.-..+|++..|-.|++||-.. ++...++. ....|++++|-|.+. .+++++ .+-|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC----r~gIciW~~s~tl 173 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC----RAGICIWSDSRTL 173 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee----cceeEEEEcCccc
Confidence 4577899999777889999999999999765 44444432 345799999999654 566665 678999976421
Q ss_pred ---ce----------eeeecccCcceEEEEeccCCCEEEEeeC-CCeEEEEeccCceeeeeE--eecCCCeeEecCCCcE
Q 023822 112 ---KY----------LRYFKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLV 175 (276)
Q Consensus 112 ---~~----------~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~ 175 (276)
+. +....+| .+|++|.|++||..+++++. |..|.+||..++..+... ...++.-+.|+|++.+
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDV 252 (445)
T ss_pred ccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCE
Confidence 11 1122334 68999999999999999886 567999999988776655 5566778999999977
Q ss_pred EEEee-CCeEEEEecccC-CCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCC----Cc----------
Q 023822 176 FAVAF-GGYIRMFDARKY-EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR----GT---------- 239 (276)
Q Consensus 176 l~~~~-d~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~---------- 239 (276)
+.++. |+..++|..... ... ... -..+.|...+|+|+|++|+..... .=++|.+.. ..
T Consensus 253 lfaAt~davfrlw~e~q~wt~e---rw~--lgsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~ 326 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQSWTKE---RWI--LGSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRV 326 (445)
T ss_pred EEEecccceeeeehhcccceec---cee--ccCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceee
Confidence 76666 999999955432 221 111 123478999999999887665432 234444321 00
Q ss_pred -EEEEe------ecCCCCCCceEEEEECCCCcEEEEecC
Q 023822 240 -LLSTY------NVKPVSRNSTLEASFSPEGMFVISGRV 271 (276)
Q Consensus 240 -~~~~~------~~~~~~~~~v~~~~~s~~g~~l~~~~~ 271 (276)
++..+ ...+-..+++.+++|.|.|.+||+.-.
T Consensus 327 lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 327 LLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred eeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 00101 001113578899999999999998644
No 210
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.5e-16 Score=118.08 Aligned_cols=203 Identities=11% Similarity=0.147 Sum_probs=145.7
Q ss_pred CCcEEEEEEcCC-CCEEEEeecCCeEEEEEccCC----ee----------eeeeeeeeeceEEEEEeccCCeEEEeccCC
Q 023822 34 NGRISSMDFHKS-SSYLVTASDDESIRLYDVTAA----TC----------LKTINSKKYGVDLVCFTSHPTTVIYSSKNG 98 (276)
Q Consensus 34 ~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~----~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 98 (276)
+..|+|++|-|. +..|+.|+..| |.+|..... +. +....+| .+|+++.|++|+..+++++.+
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~g- 216 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFG- 216 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccC-
Confidence 467999999994 56788888765 999987521 11 1112334 589999999999999999885
Q ss_pred CCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc-eeeeeE-eecCCCeeEecCCCcEE
Q 023822 99 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE-KCQGLL-RVQGRPAAAYDDQGLVF 176 (276)
Q Consensus 99 ~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~-~~~~~~~~~~~~~~~~l 176 (276)
+..|.+||..++..+.......+.+.-+.|+||+.+|+.+.-|+..++|+.... ...+-. ....+...+|+|+|.+|
T Consensus 217 -sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfL 295 (445)
T KOG2139|consen 217 -SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFL 295 (445)
T ss_pred -cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEE
Confidence 899999999998776655445677889999999999999999999999965543 333222 33467789999999988
Q ss_pred EEeeCCeEEEEecccCCCCCeee-----------eee-----cC----CCCCceEEEECCCCcEEEEeecC--------C
Q 023822 177 AVAFGGYIRMFDARKYEKGPFDI-----------FSV-----GG----DISDANVVKFSNDGRLMLLTTME--------G 228 (276)
Q Consensus 177 ~~~~d~~i~~~d~~~~~~~~~~~-----------~~~-----~~----~~~~i~~~~~~~~~~~l~~~~~d--------g 228 (276)
.....+.-++|.+....+..... ..+ .. -.+++.+++|.|.|.+||+.-.. .
T Consensus 296 Lf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~ 375 (445)
T KOG2139|consen 296 LFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKL 375 (445)
T ss_pred EEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhh
Confidence 88887777777765433221110 000 01 13577899999999999986543 2
Q ss_pred cEEEEECCCCcE
Q 023822 229 HIHVLDSFRGTL 240 (276)
Q Consensus 229 ~i~i~d~~~~~~ 240 (276)
.|.+||.+..-.
T Consensus 376 ~i~~fdtr~sp~ 387 (445)
T KOG2139|consen 376 HISRFDTRKSPP 387 (445)
T ss_pred hhhhhcccccCc
Confidence 467788665433
No 211
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.78 E-value=1e-15 Score=121.68 Aligned_cols=244 Identities=14% Similarity=0.174 Sum_probs=155.7
Q ss_pred cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (276)
Q Consensus 24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i 103 (276)
.+.+.++......-..+.|+|||+++++++.||.|.++|+.+++.+.+++... ....+++++++++++++... .+.+
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~--~~~v 102 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYE--PGTV 102 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEE--TTEE
T ss_pred CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecC--CCce
Confidence 45556666544444557899999999999999999999999999999987655 46789999999999988753 8999
Q ss_pred EEEEccCCceeeeeccc-------CcceEEEEeccCCCEEEEeeC-CCeEEEEeccCceeee--eEee-cCCCeeEecCC
Q 023822 104 RLLSLHDNKYLRYFKGH-------HDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQG--LLRV-QGRPAAAYDDQ 172 (276)
Q Consensus 104 ~~~d~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~--~~~~-~~~~~~~~~~~ 172 (276)
.++|.++.++++.+... ...+..+..+|....++..-. .+.|.+.|....+... .+.. .......|+|+
T Consensus 103 ~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpd 182 (369)
T PF02239_consen 103 SVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPD 182 (369)
T ss_dssp EEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TT
T ss_pred eEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcc
Confidence 99999999988877532 345678888888886665555 4888888877654332 2222 22346899999
Q ss_pred CcEEEEee--CCeEEEEecccCCCC--------Ce-------------------------------------------ee
Q 023822 173 GLVFAVAF--GGYIRMFDARKYEKG--------PF-------------------------------------------DI 199 (276)
Q Consensus 173 ~~~l~~~~--d~~i~~~d~~~~~~~--------~~-------------------------------------------~~ 199 (276)
++++.++. ++.|.++|.++.+.. +. ..
T Consensus 183 gry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv 262 (369)
T PF02239_consen 183 GRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVV 262 (369)
T ss_dssp SSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEE
T ss_pred cceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEE
Confidence 98876654 678888887664310 00 00
Q ss_pred eeecCCCCCceEEEECCCCcEEEEe----ecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822 200 FSVGGDISDANVVKFSNDGRLMLLT----TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP 273 (276)
Q Consensus 200 ~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 273 (276)
..+.....+ .-+..+|+++++++. ...+.|.++|.++.+....+.. +....+..+.|++||+.+..+..++
T Consensus 263 ~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~--~~~~~~~h~ef~~dG~~v~vS~~~~ 337 (369)
T PF02239_consen 263 KTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP--GPGKRVVHMEFNPDGKEVWVSVWDG 337 (369)
T ss_dssp EEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH--HHT--EEEEEE-TTSSEEEEEEE--
T ss_pred EEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec--cCCCcEeccEECCCCCEEEEEEecC
Confidence 001111112 456789999999987 3457899999999988887763 1223488999999999877665543
No 212
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.8e-16 Score=130.85 Aligned_cols=237 Identities=10% Similarity=0.111 Sum_probs=163.7
Q ss_pred cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC----CeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEE
Q 023822 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA----ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 107 (276)
Q Consensus 32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d 107 (276)
.|.-.++|.+++|+++++|+|..||.|.+|.--. ......+.-|..+|.+++|+++|.+|++|+. .+.+.+|.
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~---E~VLv~Wq 279 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGR---EGVLVLWQ 279 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeeccc---ceEEEEEe
Confidence 4777799999999999999999999999997432 1234556778889999999999999999998 99999999
Q ss_pred ccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe-------------ecCCCeeEecCCC-
Q 023822 108 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR-------------VQGRPAAAYDDQG- 173 (276)
Q Consensus 108 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------------~~~~~~~~~~~~~- 173 (276)
+.+++ .+-+..-.++|..+.++||+.+.+....|+.|.+-...+......+. ..-...++++|.-
T Consensus 280 ~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 280 LETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred ecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 99998 55566678899999999999999999999999998775544333320 1112356667733
Q ss_pred cEEEEeeCCeEEEEecccCCCC----------------------------------------------------------
Q 023822 174 LVFAVAFGGYIRMFDARKYEKG---------------------------------------------------------- 195 (276)
Q Consensus 174 ~~l~~~~d~~i~~~d~~~~~~~---------------------------------------------------------- 195 (276)
..+..+..+.|.+||+.+.+..
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 3333333677777776543210
Q ss_pred -----C-eeeeeecCCCCCceEEEEC-CCCc-EEEEeecCCcEEEEECCCCcEEEEe-------ecCCCCCCceEEEEEC
Q 023822 196 -----P-FDIFSVGGDISDANVVKFS-NDGR-LMLLTTMEGHIHVLDSFRGTLLSTY-------NVKPVSRNSTLEASFS 260 (276)
Q Consensus 196 -----~-~~~~~~~~~~~~i~~~~~~-~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~~~v~~~~~s 260 (276)
. +.......|...+...++. |... ..++++.||.+++|-+.+.+.+... .....|..++++++|+
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs 518 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS 518 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence 0 0000111233333333333 3322 6888999999999988432221110 0111367899999999
Q ss_pred CCCcEEEEecCC
Q 023822 261 PEGMFVISGRVS 272 (276)
Q Consensus 261 ~~g~~l~~~~~d 272 (276)
.||..|+.+-+|
T Consensus 519 ~dGslla~s~~~ 530 (792)
T KOG1963|consen 519 QDGSLLAVSFDD 530 (792)
T ss_pred CCCcEEEEecCC
Confidence 999888776554
No 213
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=7e-17 Score=127.64 Aligned_cols=241 Identities=16% Similarity=0.246 Sum_probs=178.1
Q ss_pred hccccceeeccCCCcEEEEEEcCCCCEE-EEeecCCeEEEEEccCCeeeee----------------------------e
Q 023822 22 QSMEVGMSFRDYNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKT----------------------------I 72 (276)
Q Consensus 22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~----------------------------~ 72 (276)
+..++++.| +|....+.|..+|||+|+ |+|..--.|++||+.+-..... +
T Consensus 40 ~rieLiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~I 118 (703)
T KOG2321|consen 40 QRIELIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTI 118 (703)
T ss_pred HHHHHHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCcee
Confidence 334444444 467888999999999986 5666778999999875322111 0
Q ss_pred eeee-----------eceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeC
Q 023822 73 NSKK-----------YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL 141 (276)
Q Consensus 73 ~~~~-----------~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 141 (276)
..|. ..-..++++.-..-|++++. ...|+-++++.|+.+..+....+.++++..++-..+|++|+.
T Consensus 119 efHak~G~hy~~RIP~~GRDm~y~~~scDly~~gs---g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~ 195 (703)
T KOG2321|consen 119 EFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGS---GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTE 195 (703)
T ss_pred eehhhcCeeeeeecCcCCccccccCCCccEEEeec---CcceEEEEccccccccccccccccceeeeecCccceEEeccc
Confidence 1110 01224444443334455554 778999999999999988878899999999999999999999
Q ss_pred CCeEEEEeccCceeeeeEe-------------ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCC
Q 023822 142 DRTVLLWDQRAEKCQGLLR-------------VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDIS 207 (276)
Q Consensus 142 d~~i~iwd~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~ 207 (276)
+|.|-.||.+.......+. ...+..+.|+.+|..+++|+ +|.+.+||++..+. + ...-.....
T Consensus 196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--l-~~kdh~~e~ 272 (703)
T KOG2321|consen 196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--L-LVKDHGYEL 272 (703)
T ss_pred CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--e-eecccCCcc
Confidence 9999999999877666551 12266899999999998888 89999999998653 2 223334456
Q ss_pred CceEEEECCC--CcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCC
Q 023822 208 DANVVKFSND--GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPF 274 (276)
Q Consensus 208 ~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 274 (276)
+|..+.|.+. ++.+++. ....++|||-.+|+....+. ....++.+++-|++-+++++-+++-
T Consensus 273 pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE----pt~~lND~C~~p~sGm~f~Ane~~~ 336 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE----PTSDLNDFCFVPGSGMFFTANESSK 336 (703)
T ss_pred ceeeecccccCCCceEEec-chHHhhhcccccCCceeecc----ccCCcCceeeecCCceEEEecCCCc
Confidence 8899999876 3444443 45679999999999999887 5667999999999999999877653
No 214
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=2.2e-16 Score=128.98 Aligned_cols=208 Identities=12% Similarity=0.127 Sum_probs=136.4
Q ss_pred CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCE
Q 023822 56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135 (276)
Q Consensus 56 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 135 (276)
..|.++|.. +.....+..+...+...+|+|+++.++..+.......|.+||+.+++... +....+.+....|+|||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 467777763 44445555666789999999999999887753224569999999887543 3334455678999999997
Q ss_pred EE-EeeCCCeEEEEe--ccCceeeeeEe-ecCCCeeEecCCCcEEEEee--CCeEEEEecccCCCCCeeeeeecCCCCCc
Q 023822 136 FI-SGSLDRTVLLWD--QRAEKCQGLLR-VQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDISDA 209 (276)
Q Consensus 136 l~-~~~~d~~i~iwd--~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~i 209 (276)
|+ +.+.++...+|. +..+....... ........|+|+|+.++..+ ++...+|.+...... ....... ....
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt~~--g~~~ 330 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-AQRVTFT--GSYN 330 (427)
T ss_pred EEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-eEEEecC--CCCc
Confidence 76 566777656554 44444322222 22245678999998776655 356666655422111 1122222 2234
Q ss_pred eEEEECCCCcEEEEeecCC---cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822 210 NVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP 273 (276)
Q Consensus 210 ~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 273 (276)
...+|+|+|++|+..+.++ .|.+||+.+++...... ........|+|||+.|+.++.++
T Consensus 331 ~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-----~~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 331 TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-----TTRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-----CCCccCceECCCCCEEEEEEecC
Confidence 4678999999998877654 59999998887543322 12345789999999988877654
No 215
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.5e-16 Score=131.21 Aligned_cols=227 Identities=14% Similarity=0.121 Sum_probs=165.5
Q ss_pred EEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCC---eEEEeccCCCCCceEEEEccCCcee
Q 023822 38 SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT---TVIYSSKNGWDESLRLLSLHDNKYL 114 (276)
Q Consensus 38 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~~~~d~~i~~~d~~~~~~~ 114 (276)
....|++|+++++.... ..|.||...++.++..+..|..++..+.+.|... ++++++. +|.|++||...+..+
T Consensus 20 ~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl---~G~I~vwd~~~~~Ll 95 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSL---DGTIRVWDWSDGELL 95 (792)
T ss_pred cccccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEec---CccEEEecCCCcEEE
Confidence 34568999988887654 5899999999999999999999999999988665 4556776 999999999887665
Q ss_pred eeecccCcc----------------------------------------------------------eEEEEeccCCCEE
Q 023822 115 RYFKGHHDR----------------------------------------------------------VVSLSLCSSKDCF 136 (276)
Q Consensus 115 ~~~~~~~~~----------------------------------------------------------i~~~~~~~~~~~l 136 (276)
+++..+-.. -.++.+++.+.+.
T Consensus 96 kt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~ 175 (792)
T KOG1963|consen 96 KTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFK 175 (792)
T ss_pred EEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEE
Confidence 543211000 1223333333332
Q ss_pred EEeeCCCeEEEEeccCceeee------eEeecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCc
Q 023822 137 ISGSLDRTVLLWDQRAEKCQG------LLRVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDA 209 (276)
Q Consensus 137 ~~~~~d~~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i 209 (276)
... .+..+.+|+..+..... ..|...+.+.+++|.+++++++. ||+|.+|.--..+........+.-|..+|
T Consensus 176 ~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V 254 (792)
T KOG1963|consen 176 GIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEV 254 (792)
T ss_pred EEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccc
Confidence 222 24457777776643110 01333467899999999999998 89999997544223333345556688899
Q ss_pred eEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822 210 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP 273 (276)
Q Consensus 210 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 273 (276)
++++|+++|.+|++|+..|.+.+|.+.+++.. -+. ...++|..+.+|||+.+.+...+|.
T Consensus 255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq-fLP---RLgs~I~~i~vS~ds~~~sl~~~DN 314 (792)
T KOG1963|consen 255 NSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ-FLP---RLGSPILHIVVSPDSDLYSLVLEDN 314 (792)
T ss_pred ceeEEecCCceEeecccceEEEEEeecCCCcc-ccc---ccCCeeEEEEEcCCCCeEEEEecCc
Confidence 99999999999999999999999999998832 222 3678999999999999887776664
No 216
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.77 E-value=1.1e-16 Score=116.08 Aligned_cols=158 Identities=19% Similarity=0.262 Sum_probs=113.4
Q ss_pred EEEEEeccCCeEEEeccC-------CCCCceEEEEccCC-ceeeeecc-cCcceEEEEeccCCCEEEEe--eCCCeEEEE
Q 023822 80 DLVCFTSHPTTVIYSSKN-------GWDESLRLLSLHDN-KYLRYFKG-HHDRVVSLSLCSSKDCFISG--SLDRTVLLW 148 (276)
Q Consensus 80 ~~~~~~~~~~~l~~~~~~-------~~d~~i~~~d~~~~-~~~~~~~~-~~~~i~~~~~~~~~~~l~~~--~~d~~i~iw 148 (276)
..+.|+++|++|++-... ..-+...+|.++.. .....+.- ..++|.+++|+|+++.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 457888888887765541 11234555555322 33344432 34579999999999987654 457799999
Q ss_pred eccCceeeeeEeecCCCeeEecCCCcEEEEee----CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEe
Q 023822 149 DQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT 224 (276)
Q Consensus 149 d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 224 (276)
|++ .+.+..+.......+.|+|+|++++.+. .|.|.+||.++.+. +... .| ..++.++|+|+|++|+++
T Consensus 89 d~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~----i~~~-~~-~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 89 DVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK----ISTF-EH-SDATDVEWSPDGRYLATA 161 (194)
T ss_pred cCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE----eecc-cc-CcEEEEEEcCCCCEEEEE
Confidence 997 6666677767778999999999998876 47899999996442 3222 23 357899999999999998
Q ss_pred ec------CCcEEEEECCCCcEEEEee
Q 023822 225 TM------EGHIHVLDSFRGTLLSTYN 245 (276)
Q Consensus 225 ~~------dg~i~i~d~~~~~~~~~~~ 245 (276)
.. |+.++||+. +|+++....
T Consensus 162 ~t~~r~~~dng~~Iw~~-~G~~l~~~~ 187 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSF-QGRLLYKKP 187 (194)
T ss_pred EeccceeccccEEEEEe-cCeEeEecc
Confidence 64 788999997 577776654
No 217
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.1e-18 Score=132.62 Aligned_cols=250 Identities=19% Similarity=0.250 Sum_probs=186.4
Q ss_pred HHhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeee-eeeeeceEEEEEecc--CCeEEEec
Q 023822 19 EILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI-NSKKYGVDLVCFTSH--PTTVIYSS 95 (276)
Q Consensus 19 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~~~~ 95 (276)
...+.+.....|..|.+.|..+.|+..|..|++|+.|..|.+||...++....+ .+|...|....|-|. ...+++++
T Consensus 127 ~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s 206 (559)
T KOG1334|consen 127 LFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS 206 (559)
T ss_pred HHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecc
Confidence 345667888889999999999999999999999999999999999988877666 467777887788874 45677777
Q ss_pred cCCCCCceEEEEccCCce---eeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE-----eec---C
Q 023822 96 KNGWDESLRLLSLHDNKY---LRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL-----RVQ---G 163 (276)
Q Consensus 96 ~~~~d~~i~~~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~---~ 163 (276)
. ||.+++=.+..... ...+..|.++|.-++.-|+.. .|.+++.|+.+.-.|++...+...+ +.. .
T Consensus 207 ~---dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~ 283 (559)
T KOG1334|consen 207 R---DGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVG 283 (559)
T ss_pred c---cCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcccee
Confidence 7 99999887654332 345667999999999999765 6999999999999999987665544 111 2
Q ss_pred CCeeEecCCCc-EEEEee-CCeEEEEecccCCCCCe-----------------------------------------eee
Q 023822 164 RPAAAYDDQGL-VFAVAF-GGYIRMFDARKYEKGPF-----------------------------------------DIF 200 (276)
Q Consensus 164 ~~~~~~~~~~~-~l~~~~-d~~i~~~d~~~~~~~~~-----------------------------------------~~~ 200 (276)
...++.+|.+. .++++. |..+++||.+....... .++
T Consensus 284 L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF 363 (559)
T KOG1334|consen 284 LYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLF 363 (559)
T ss_pred eeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEe
Confidence 34677777653 445444 88888888775432100 000
Q ss_pred ----------------------eecCCC--CCceEEE-ECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceE
Q 023822 201 ----------------------SVGGDI--SDANVVK-FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL 255 (276)
Q Consensus 201 ----------------------~~~~~~--~~i~~~~-~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 255 (276)
..++|. ..|..+- |-|...|+++|+.-|.|.||+-.+++.++.++ +...-|+
T Consensus 364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me---gDr~VVN 440 (559)
T KOG1334|consen 364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME---GDRHVVN 440 (559)
T ss_pred ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh---cccceEe
Confidence 011121 1233333 44666799999999999999999999998888 5556899
Q ss_pred EEEECCCCcEEEEecCCCC
Q 023822 256 EASFSPEGMFVISGRVSPF 274 (276)
Q Consensus 256 ~~~~s~~g~~l~~~~~dg~ 274 (276)
+|.-+|.-..||+++-|--
T Consensus 441 CLEpHP~~PvLAsSGid~D 459 (559)
T KOG1334|consen 441 CLEPHPHLPVLASSGIDHD 459 (559)
T ss_pred ccCCCCCCchhhccCCccc
Confidence 9999999999999987743
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=3.4e-15 Score=110.15 Aligned_cols=184 Identities=16% Similarity=0.279 Sum_probs=134.4
Q ss_pred CcccC-cccceeeeeehHHHhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEcc-CCeeeeeeeeeee--
Q 023822 2 VGSQS-EREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT-AATCLKTINSKKY-- 77 (276)
Q Consensus 2 vg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~-- 77 (276)
||+.. ++..+..+-++++... +.+.++. ...+|.++.+.++ .|++.- .+.|+||... +.+.+..+.....
T Consensus 64 VGGg~~pky~pNkviIWDD~k~--~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPk 137 (346)
T KOG2111|consen 64 VGGGSRPKYPPNKVIIWDDLKE--RCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPK 137 (346)
T ss_pred ecCCCCCCCCCceEEEEecccC--cEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCC
Confidence 45544 5566666777775432 2233332 3678999999875 555553 4689999987 5566666544332
Q ss_pred ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCce--eeeecccCcceEEEEeccCCCEEEEeeCCCe-EEEEeccCce
Q 023822 78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY--LRYFKGHHDRVVSLSLCSSKDCFISGSLDRT-VLLWDQRAEK 154 (276)
Q Consensus 78 ~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~ 154 (276)
...+++-..+...|+.-+.. -|.|++-|+...+. ...+..|.+.|.|++.+.+|.++|+++..|+ |+|||..+++
T Consensus 138 GlC~~~~~~~k~~LafPg~k--~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~ 215 (346)
T KOG2111|consen 138 GLCSLCPTSNKSLLAFPGFK--TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGT 215 (346)
T ss_pred ceEeecCCCCceEEEcCCCc--cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCc
Confidence 33333333344445544432 79999999987665 4778899999999999999999999999997 8999999999
Q ss_pred eeeeEeec----CCCeeEecCCCcEEEEeeC-CeEEEEecccCC
Q 023822 155 CQGLLRVQ----GRPAAAYDDQGLVFAVAFG-GYIRMFDARKYE 193 (276)
Q Consensus 155 ~~~~~~~~----~~~~~~~~~~~~~l~~~~d-~~i~~~d~~~~~ 193 (276)
.+.+++.+ .+.+++|+|+..+|++++| |++.+|.++...
T Consensus 216 ~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 216 LLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 99999443 4679999999999999995 999999987643
No 219
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.76 E-value=1.4e-14 Score=115.26 Aligned_cols=245 Identities=14% Similarity=0.188 Sum_probs=160.3
Q ss_pred hccccceeeccCCCcEEEEEEcCCCCEEEEeec----CCeEEEEEccCC--e--eeeeeeeeeeceEEEEEeccCCeEEE
Q 023822 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASD----DESIRLYDVTAA--T--CLKTINSKKYGVDLVCFTSHPTTVIY 93 (276)
Q Consensus 22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~~ 93 (276)
..++....+.. ......++++|++++|.+..+ ++.|..|.+... + .+............++++|+++++++
T Consensus 25 g~l~~~~~~~~-~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~v 103 (345)
T PF10282_consen 25 GTLTLVQTVAE-GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYV 103 (345)
T ss_dssp TEEEEEEEEEE-SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEE
T ss_pred CCceEeeeecC-CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEE
Confidence 44555554433 344567899999999998876 568999988753 3 23333333445678999999999999
Q ss_pred eccCCCCCceEEEEccCC-ceeee---ec----------ccCcceEEEEeccCCCEEEEeeC-CCeEEEEeccCce--ee
Q 023822 94 SSKNGWDESLRLLSLHDN-KYLRY---FK----------GHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEK--CQ 156 (276)
Q Consensus 94 ~~~~~~d~~i~~~d~~~~-~~~~~---~~----------~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~--~~ 156 (276)
+... +|.|.++++... ..... +. .......++.++|+++++++... ...|.+|++.... ..
T Consensus 104 any~--~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~ 181 (345)
T PF10282_consen 104 ANYG--GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLT 181 (345)
T ss_dssp EETT--TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEE
T ss_pred EEcc--CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEE
Confidence 9864 899999999873 32221 11 12245678999999998777654 4579999997654 22
Q ss_pred e--eE---eecCCCeeEecCCCcEEEEee--CCeEEEEecccCCCC--Ceeeee-ecC---CCCCceEEEECCCCcEEEE
Q 023822 157 G--LL---RVQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKG--PFDIFS-VGG---DISDANVVKFSNDGRLMLL 223 (276)
Q Consensus 157 ~--~~---~~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~--~~~~~~-~~~---~~~~i~~~~~~~~~~~l~~ 223 (276)
. .+ ...+.+.+.|+|+++++.+.. ++.|.+|++...... ...... ... .......++++|+|++|++
T Consensus 182 ~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyv 261 (345)
T PF10282_consen 182 PVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYV 261 (345)
T ss_dssp EEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEE
T ss_pred EeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEE
Confidence 2 22 234456899999998887776 799999999832211 111111 111 1125678999999999888
Q ss_pred ee-cCCcEEEEECC--CCcE--EEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822 224 TT-MEGHIHVLDSF--RGTL--LSTYNVKPVSRNSTLEASFSPEGMFVISGRVS 272 (276)
Q Consensus 224 ~~-~dg~i~i~d~~--~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 272 (276)
+. ..+.|.+|++. ++++ +..+. ......+.++++|+|++|+++..+
T Consensus 262 snr~~~sI~vf~~d~~~g~l~~~~~~~---~~G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 262 SNRGSNSISVFDLDPATGTLTLVQTVP---TGGKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp EECTTTEEEEEEECTTTTTEEEEEEEE---ESSSSEEEEEE-TTSSEEEEEETT
T ss_pred EeccCCEEEEEEEecCCCceEEEEEEe---CCCCCccEEEEeCCCCEEEEEecC
Confidence 76 45789999983 3443 23333 234558999999999999988754
No 220
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.75 E-value=3.9e-17 Score=117.36 Aligned_cols=203 Identities=19% Similarity=0.145 Sum_probs=147.6
Q ss_pred cceeec-cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeee---------------------------eee----
Q 023822 26 VGMSFR-DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK---------------------------TIN---- 73 (276)
Q Consensus 26 ~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---------------------------~~~---- 73 (276)
....++ .|...|+.+.--|+ ..|.+-+.|..+.+|++..+..+. .+.
T Consensus 47 ~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgs 125 (323)
T KOG0322|consen 47 DLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGS 125 (323)
T ss_pred cchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCccc
Confidence 334455 46778888888887 567788899999999975421100 000
Q ss_pred ----------------------eeeeceEEEEEec-cC-CeEEEeccCCCCCceEEEEccCCc----------eeeeecc
Q 023822 74 ----------------------SKKYGVDLVCFTS-HP-TTVIYSSKNGWDESLRLLSLHDNK----------YLRYFKG 119 (276)
Q Consensus 74 ----------------------~~~~~v~~~~~~~-~~-~~l~~~~~~~~d~~i~~~d~~~~~----------~~~~~~~ 119 (276)
...+.+.+..+.. .+ ..++.++.. +|.+.+||+.++. .......
T Consensus 126 de~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyE--sghvv~wd~S~~~~~~~~~~~~kv~~~~as 203 (323)
T KOG0322|consen 126 DETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYE--SGHVVIWDLSTGDKIIQLPQSSKVESPNAS 203 (323)
T ss_pred chhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEecc--CCeEEEEEccCCceeeccccccccccchhh
Confidence 0112344444322 22 334444433 9999999999873 3334457
Q ss_pred cCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc--ee----eeeEeecCCCeeEecCCCcEEEEee-CCeEEEEecccC
Q 023822 120 HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE--KC----QGLLRVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKY 192 (276)
Q Consensus 120 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~----~~~~~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~ 192 (276)
|..+|.++.+.+.-..=++++.+..+..|.+... .+ ...+...++..+.+-||+++++++. |+.|++|..++.
T Consensus 204 h~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl 283 (323)
T KOG0322|consen 204 HKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL 283 (323)
T ss_pred ccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC
Confidence 8999999999886666678888888999988743 11 2233566788999999999999988 999999999997
Q ss_pred CCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEEC
Q 023822 193 EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS 235 (276)
Q Consensus 193 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 235 (276)
.. ...+..|...|++++|+|+...+|+++.|++|.+|++
T Consensus 284 ~p----LAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 284 NP----LAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred Cc----hhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 65 5556678899999999999999999999999999986
No 221
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=2.7e-18 Score=132.17 Aligned_cols=228 Identities=15% Similarity=0.225 Sum_probs=180.2
Q ss_pred CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822 35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL 114 (276)
Q Consensus 35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~ 114 (276)
..|..+.|-.+.+++|++ ...-++||| ..|..+..++.+. +|..+.|.|.--.|++++. .|.++.-|+.+|+.+
T Consensus 171 Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHClk~~~-~v~rLeFLPyHfLL~~~~~---~G~L~Y~DVS~GklV 244 (545)
T KOG1272|consen 171 ETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCLKRHI-RVARLEFLPYHFLLVAASE---AGFLKYQDVSTGKLV 244 (545)
T ss_pred hhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeehhhcC-chhhhcccchhheeeeccc---CCceEEEeechhhhh
Confidence 456667777777788877 456799999 5677777777665 7999999999888888887 899999999999999
Q ss_pred eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEEEEeccc
Q 023822 115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARK 191 (276)
Q Consensus 115 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~ 191 (276)
..+....+.+..|+-+|-+..+-+|...|+|.+|...+.+++..+ |..++.++++.++|++++++. |..++|||++.
T Consensus 245 a~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 245 ASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN 324 (545)
T ss_pred HHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecc
Confidence 999888899999999999889999999999999999988887766 888899999999999999988 99999999998
Q ss_pred CCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEE-CCC--CcEEEEeecCCCCCCceEEEEECCCCcEEEE
Q 023822 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD-SFR--GTLLSTYNVKPVSRNSTLEASFSPEGMFVIS 268 (276)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d-~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 268 (276)
... ...... +.+...+++|..| +++.+....|.||. .-. +..-..+-.+. ..++|.++.|.|-...|-.
T Consensus 325 ~~q----l~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~-~~~~V~~l~FcP~EDvLGI 396 (545)
T KOG1272|consen 325 FYQ----LHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHR-CGGPVEDLRFCPYEDVLGI 396 (545)
T ss_pred ccc----cceeec-CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhc-cCcccccceeccHHHeeec
Confidence 663 323222 3467788898776 34445556899995 222 22222333332 4568999999998888888
Q ss_pred ecCCCCCC
Q 023822 269 GRVSPFSS 276 (276)
Q Consensus 269 ~~~dg~vs 276 (276)
|-..|+.|
T Consensus 397 GH~~G~ts 404 (545)
T KOG1272|consen 397 GHAGGITS 404 (545)
T ss_pred cccCCcee
Confidence 87777643
No 222
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.74 E-value=4.6e-16 Score=112.85 Aligned_cols=150 Identities=12% Similarity=0.207 Sum_probs=112.5
Q ss_pred EEEEEcCCCCEEEEeec----------CCeEEEEEcc-CCeeeeeeee-eeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822 38 SSMDFHKSSSYLVTASD----------DESIRLYDVT-AATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 105 (276)
Q Consensus 38 ~~~~~~~~~~~l~~~~~----------d~~i~iwd~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~ 105 (276)
..+.|+|+|++|+.-.. -+...+|.++ .+.....+.. ..++|.+++|+|+++.+++.... .+..|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~-~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS-MPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc-CCcccEE
Confidence 35889999998775433 1345555553 2334444443 34579999999999998766421 1679999
Q ss_pred EEccCCceeeeecccCcceEEEEeccCCCEEEEeeCC---CeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEee--
Q 023822 106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD---RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF-- 180 (276)
Q Consensus 106 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-- 180 (276)
||++ ++.+..+. ...+..+.|+|+|+++++++.+ |.|.+||+++.+.+..........++|+|+|++++++.
T Consensus 88 yd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTS 164 (194)
T ss_pred EcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEec
Confidence 9996 55566654 5667899999999999998753 67999999999988888777788999999999998875
Q ss_pred -----CCeEEEEeccc
Q 023822 181 -----GGYIRMFDARK 191 (276)
Q Consensus 181 -----d~~i~~~d~~~ 191 (276)
|+.+++|+...
T Consensus 165 ~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 165 PRLRVDNGFKIWSFQG 180 (194)
T ss_pred cceeccccEEEEEecC
Confidence 67888998864
No 223
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=1.4e-15 Score=129.91 Aligned_cols=217 Identities=13% Similarity=0.131 Sum_probs=157.4
Q ss_pred ccccceeeccCCCcEEEEEEcCCC-CEEEEeecCCeEEEEEccCC-------eeeeeeeeeeeceEEEEEeccCCeEEEe
Q 023822 23 SMEVGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHPTTVIYS 94 (276)
Q Consensus 23 ~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 94 (276)
....+..+..|...|..++.+++. .++++||.||+|++||...- +...++.....++.++...+.+..++++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 345667788999999999998754 99999999999999998631 2334455456789999999999999999
Q ss_pred ccCCCCCceEEEEccCCc-------eeeeeccc-CcceEEE-Eecc-CC-CEEEEeeCCCeEEEEeccCceeeeeE----
Q 023822 95 SKNGWDESLRLLSLHDNK-------YLRYFKGH-HDRVVSL-SLCS-SK-DCFISGSLDRTVLLWDQRAEKCQGLL---- 159 (276)
Q Consensus 95 ~~~~~d~~i~~~d~~~~~-------~~~~~~~~-~~~i~~~-~~~~-~~-~~l~~~~~d~~i~iwd~~~~~~~~~~---- 159 (276)
+. ||.|.+.+++..+ ..+..+.+ .+.+.+| +|.. .+ ..++.+...+.|..||+++......+
T Consensus 1117 t~---DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1117 TK---DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred cC---CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 88 9999999987621 11111112 2233333 3332 22 37888888999999999987655444
Q ss_pred eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC---cEEEEee--cCCcEEEE
Q 023822 160 RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG---RLMLLTT--MEGHIHVL 233 (276)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~--~dg~i~i~ 233 (276)
..+-+.+++.+|.+.+++.|+ .|.+.+||+|-... ......+ +..++..+..+|-. ...++++ ..+.|.+|
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~--i~sw~~P-~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP--ILSWEHP-ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred cccceeEEEecCCceEEEEecCCceEEEEEeecCce--eecccCc-ccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 455678999999999999998 79999999997442 2233333 34678888877742 4454444 56789999
Q ss_pred ECCCCcEEEEee
Q 023822 234 DSFRGTLLSTYN 245 (276)
Q Consensus 234 d~~~~~~~~~~~ 245 (276)
++.+|.....+.
T Consensus 1271 n~~~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1271 NMETGLRQTVLW 1282 (1431)
T ss_pred ecccCcceEEEE
Confidence 999998777765
No 224
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=3.7e-16 Score=113.91 Aligned_cols=190 Identities=13% Similarity=0.197 Sum_probs=140.5
Q ss_pred ccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCe---eeeeeeeeeeceEEEEEeccCC-eEEEeccCCCCCceEE
Q 023822 31 RDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAAT---CLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRL 105 (276)
Q Consensus 31 ~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~~ 105 (276)
..+..++++..|+. +.+++.+++-|-+..|||++++. ....+-.|..+|..++|...+. .+++.+. ||.+++
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvga---DGSvRm 223 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGA---DGSVRM 223 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecC---CCcEEE
Confidence 35678999999998 77899999999999999999863 4667889999999999998654 5666676 999999
Q ss_pred EEccCCceeeeec---ccCcceEEEEeccCC-CEEEEeeCC-CeEEEEeccCce-eeeeE--eecCCCeeEecCCC--cE
Q 023822 106 LSLHDNKYLRYFK---GHHDRVVSLSLCSSK-DCFISGSLD-RTVLLWDQRAEK-CQGLL--RVQGRPAAAYDDQG--LV 175 (276)
Q Consensus 106 ~d~~~~~~~~~~~---~~~~~i~~~~~~~~~-~~l~~~~~d-~~i~iwd~~~~~-~~~~~--~~~~~~~~~~~~~~--~~ 175 (276)
||++.-+.-..+. ....+...++|+++. +++|+-..| ..|.+.|+|... ++..+ |...++.++|.|.. .+
T Consensus 224 FDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hi 303 (364)
T KOG0290|consen 224 FDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHI 303 (364)
T ss_pred EEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCcee
Confidence 9998765433332 224577889998854 477766555 469999999764 34445 66778999999975 34
Q ss_pred EEEeeCCeEEEEecccCCC----CCeeeeeecCCCCCceEEEECCC-CcEEEEeec
Q 023822 176 FAVAFGGYIRMFDARKYEK----GPFDIFSVGGDISDANVVKFSND-GRLMLLTTM 226 (276)
Q Consensus 176 l~~~~d~~i~~~d~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~ 226 (276)
..+|.|.++.+||+..... .++..+. ..++|+.+.|++. +..++.+..
T Consensus 304 ctaGDD~qaliWDl~q~~~~~~~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 304 CTAGDDCQALIWDLQQMPRENGEDPILAYT---AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred eecCCcceEEEEecccccccCCCCchhhhh---ccceeeeeeecccCCCEEEEEec
Confidence 4444489999999987543 1222222 4468999999974 566766643
No 225
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=5.7e-15 Score=121.38 Aligned_cols=223 Identities=9% Similarity=0.083 Sum_probs=148.1
Q ss_pred eeeccCCCcEEEEEEcCCCCEEEEeecC---CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822 28 MSFRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104 (276)
Q Consensus 28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~ 104 (276)
+.+..+...+...+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|+++.++.....+.+..|+
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 4455667789999999999999876643 369999998876533 322334456789999999988654322244788
Q ss_pred EEEccCCceeeeecccCcceEEEEeccCCCEEEEeeC-CC--eEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee
Q 023822 105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF 180 (276)
Q Consensus 105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~ 180 (276)
+||+.+++.. .+..+........|+|+++.++..+. ++ .|+++|+.+++..... .........|+|+++.++...
T Consensus 271 ~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 271 VMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVH 349 (430)
T ss_pred EEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEE
Confidence 9999887644 34445556677899999997766554 33 5778888777644332 222234578999998887766
Q ss_pred --CC--eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC---CcEEEEECCCCcEEEEeecCCCCCCc
Q 023822 181 --GG--YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNS 253 (276)
Q Consensus 181 --d~--~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~ 253 (276)
++ .|.++|+.+++. ...... .......|+|+|+.++..+.+ ..|.++++. +.....+. .+.+.
T Consensus 350 ~~~~~~~l~~~dl~tg~~---~~lt~~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~---~~~g~ 419 (430)
T PRK00178 350 RQDGNFHVAAQDLQRGSV---RILTDT---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLP---TAQGE 419 (430)
T ss_pred ccCCceEEEEEECCCCCE---EEccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECc---CCCCC
Confidence 33 588899887542 111111 122346899999998877654 347777764 44444554 24556
Q ss_pred eEEEEECCC
Q 023822 254 TLEASFSPE 262 (276)
Q Consensus 254 v~~~~~s~~ 262 (276)
+...+|+|-
T Consensus 420 ~~~p~ws~~ 428 (430)
T PRK00178 420 VREPSWSPY 428 (430)
T ss_pred cCCCccCCC
Confidence 777888874
No 226
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=2.7e-15 Score=111.39 Aligned_cols=236 Identities=11% Similarity=0.073 Sum_probs=166.1
Q ss_pred eeeccCCCcEEEEEEcCCCC-EEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCC--------
Q 023822 28 MSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG-------- 98 (276)
Q Consensus 28 ~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-------- 98 (276)
..+.....++.+++|||||+ .|.+...|-.|.+|.+.+.+... ++-.+..+..++|+|++++.+.++...
T Consensus 85 ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~ 163 (447)
T KOG4497|consen 85 CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS 163 (447)
T ss_pred EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHH
Confidence 34556678899999999995 55667778899999998766433 333445678999999999988876521
Q ss_pred -------------------------CCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc
Q 023822 99 -------------------------WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE 153 (276)
Q Consensus 99 -------------------------~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 153 (276)
.+..+.+||.--.-.+..+. -.-.+..++|+|.+++|+.|+.|+.+++.+--+-
T Consensus 164 ~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tW 242 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTW 242 (447)
T ss_pred hhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeee
Confidence 03445666632222222222 2346888999999999999999999887542211
Q ss_pred ee------------------------------------------------------------eeeEe--------ecCCC
Q 023822 154 KC------------------------------------------------------------QGLLR--------VQGRP 165 (276)
Q Consensus 154 ~~------------------------------------------------------------~~~~~--------~~~~~ 165 (276)
+. .+.++ ..++.
T Consensus 243 k~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g 322 (447)
T KOG4497|consen 243 KPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAG 322 (447)
T ss_pred eehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccc
Confidence 10 00000 01122
Q ss_pred eeEecCCCcEEEEeeC---CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEE
Q 023822 166 AAAYDDQGLVFAVAFG---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS 242 (276)
Q Consensus 166 ~~~~~~~~~~l~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 242 (276)
-++|++|..++++-.| +.+-+||++..+. +..-....+|....|+|....|+.+.....+++|...-...+.
T Consensus 323 ~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l-----~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~ 397 (447)
T KOG4497|consen 323 KLAFSCDSTYAATRNDKYPNALWLWDLQNLKL-----HAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVG 397 (447)
T ss_pred eeeecCCceEEeeecCCCCceEEEEechhhhh-----hhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEe
Confidence 5899999999999885 6899999998553 3333345589999999998888888878889999976544443
Q ss_pred EeecCCCCCCceEEEEECCCCcEEEEecCCCC
Q 023822 243 TYNVKPVSRNSTLEASFSPEGMFVISGRVSPF 274 (276)
Q Consensus 243 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 274 (276)
.- +..-.|.++.|.-+|..++..+.|.+
T Consensus 398 vP----~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 398 VP----KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred cC----CCCceeeeEEecCCCcEEEEEcCCce
Confidence 33 24578999999999999999999865
No 227
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.73 E-value=4.2e-15 Score=121.88 Aligned_cols=206 Identities=16% Similarity=0.132 Sum_probs=140.6
Q ss_pred CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCE
Q 023822 56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135 (276)
Q Consensus 56 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 135 (276)
..|.++|.... ....+..+...+....|+|++++++.+...+....|++||+.+++... +..+...+.+++|+|+++.
T Consensus 170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 36888887533 344455556678899999999999988753324689999998876543 3335566677999999987
Q ss_pred EEE-eeCCC--eEEEEeccCceeeeeEee-cCCCeeEecCCCcEEEEee--C--CeEEEEecccCCCCCeeeeeecCCCC
Q 023822 136 FIS-GSLDR--TVLLWDQRAEKCQGLLRV-QGRPAAAYDDQGLVFAVAF--G--GYIRMFDARKYEKGPFDIFSVGGDIS 207 (276)
Q Consensus 136 l~~-~~~d~--~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~--d--~~i~~~d~~~~~~~~~~~~~~~~~~~ 207 (276)
|+. .+.++ .|++||+.+++....... .......|+|+++.++... + ..|+++|+.+.+. ..+..+..
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-----~~l~~~~~ 322 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-----RRLTFRGG 322 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-----EEeecCCC
Confidence 664 44444 588999987765443322 2234678999998776555 2 3688888775432 22222334
Q ss_pred CceEEEECCCCcEEEEeecCC---cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822 208 DANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP 273 (276)
Q Consensus 208 ~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 273 (276)
......|+|+|++++.++.++ .|.+||+.++... .+.. ........|+|||++|+..+.++
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~----~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTD----TGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccC----CCCCCCceECCCCCEEEEEEeCC
Confidence 567789999999999888775 7899998876543 3321 12234568999999888877654
No 228
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.73 E-value=5.8e-15 Score=121.09 Aligned_cols=220 Identities=13% Similarity=0.159 Sum_probs=146.3
Q ss_pred eeeccCCCcEEEEEEcCCCCEEEEeecC---CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822 28 MSFRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104 (276)
Q Consensus 28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~ 104 (276)
+.+..+...+...+|+|||++|+.++.+ ..|++||+.+++... +..+...+..++|+|+++.++.......+..|+
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~ 261 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY 261 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence 4455666778999999999999887643 479999998876533 333445567789999999887654322245699
Q ss_pred EEEccCCceeeeecccCcceEEEEeccCCCEEEEeeC-CC--eEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee
Q 023822 105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF 180 (276)
Q Consensus 105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~ 180 (276)
+||+.+++.. .+..+........|+|+++.|+..+. ++ .|+++|+.+++..... .........|+|++++++.+.
T Consensus 262 ~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 262 VMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVH 340 (417)
T ss_pred EEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEE
Confidence 9998877543 34445555567789999998876654 33 5888888776644333 334456789999998887776
Q ss_pred -CC---eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC---cEEEEECCCCcEEEEeecCCCCCCc
Q 023822 181 -GG---YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNS 253 (276)
Q Consensus 181 -d~---~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~ 253 (276)
++ .|.+||+.+... .... .. .......|+|+|++|+..+.++ .+.+.+. +++....+. ...+.
T Consensus 341 ~~~~~~~i~~~d~~~~~~---~~l~--~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~---~~~g~ 410 (417)
T TIGR02800 341 REGGGFNIAVMDLDGGGE---RVLT--DT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLP---LGNGD 410 (417)
T ss_pred ccCCceEEEEEeCCCCCe---EEcc--CC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECC---CCCCC
Confidence 43 788999876432 1111 11 1234568999999888877654 3556563 455555554 23445
Q ss_pred eEEEEE
Q 023822 254 TLEASF 259 (276)
Q Consensus 254 v~~~~~ 259 (276)
+..++|
T Consensus 411 ~~~~~w 416 (417)
T TIGR02800 411 VREPAW 416 (417)
T ss_pred cCCCCC
Confidence 555555
No 229
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=7.8e-15 Score=120.37 Aligned_cols=221 Identities=11% Similarity=0.078 Sum_probs=143.2
Q ss_pred eccCCCcEEEEEEcCCCCEEEEeecC---CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822 30 FRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 106 (276)
Q Consensus 30 ~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~ 106 (276)
+..+...+.+..|+|||+.|+..+.+ ..|++||+.+++... +...........|+|+++.++..........|+++
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence 44456678899999999998876543 268899998776432 22222334578999999988875432113358888
Q ss_pred EccCCceeeeecccCcceEEEEeccCCCEEEEeeC-CC--eEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee--
Q 023822 107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-- 180 (276)
Q Consensus 107 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-- 180 (276)
|+.+++.. .+..+.......+|+||++.++..+. ++ .|+++|+.+++..... .........|+|+++.++...
T Consensus 292 dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~ 370 (448)
T PRK04792 292 DIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRT 370 (448)
T ss_pred ECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEec
Confidence 98877643 44445556678899999997766553 33 5777788776644332 223334578999998887765
Q ss_pred CC--eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC-C--cEEEEECCCCcEEEEeecCCCCCCceE
Q 023822 181 GG--YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTL 255 (276)
Q Consensus 181 d~--~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~v~ 255 (276)
++ .|.++|+.+++. .... .. .......|+|+|+.|+..+.+ + .+.+++. +|+....+. .+.+.+.
T Consensus 371 ~g~~~I~~~dl~~g~~---~~lt--~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~---~~~g~~~ 440 (448)
T PRK04792 371 NGKFNIARQDLETGAM---QVLT--ST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLP---AGQGEVK 440 (448)
T ss_pred CCceEEEEEECCCCCe---EEcc--CC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECc---CCCCCcC
Confidence 33 566677766442 1111 11 112245899999988776543 3 3777786 666666665 3456677
Q ss_pred EEEECCC
Q 023822 256 EASFSPE 262 (276)
Q Consensus 256 ~~~~s~~ 262 (276)
..+|+|-
T Consensus 441 ~p~Wsp~ 447 (448)
T PRK04792 441 SPAWSPF 447 (448)
T ss_pred CCccCCC
Confidence 7888873
No 230
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=3.7e-15 Score=122.14 Aligned_cols=215 Identities=11% Similarity=0.056 Sum_probs=150.6
Q ss_pred CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCce--eee----ecccCcceEEEEe
Q 023822 56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY--LRY----FKGHHDRVVSLSL 129 (276)
Q Consensus 56 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~--~~~----~~~~~~~i~~~~~ 129 (276)
+.+.+|+++........-.....|.++.|+|....+++++.. +|+|.+||++.+.. ... ...|..++..+.|
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y--~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCY--NGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeecc--CceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 478999998763333333345689999999977666665542 99999999987754 222 2358899999999
Q ss_pred ccCCC--EEEEeeCCCeEEEEeccCceeeeeE--------------eecCCCeeEecCCC--cEEEEeeCCeEEEEeccc
Q 023822 130 CSSKD--CFISGSLDRTVLLWDQRAEKCQGLL--------------RVQGRPAAAYDDQG--LVFAVAFGGYIRMFDARK 191 (276)
Q Consensus 130 ~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~--------------~~~~~~~~~~~~~~--~~l~~~~d~~i~~~d~~~ 191 (276)
..+.. -|++++.||.|..|+++.-...... ...++.++.|.+.. ++++++.+|.|..-+...
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 76544 4999999999999998754331111 12335578887744 444444479888755444
Q ss_pred CCCCC----eeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC-CCcEEEEeecCCCCCCceEEEEECCCC-cE
Q 023822 192 YEKGP----FDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLEASFSPEG-MF 265 (276)
Q Consensus 192 ~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~ 265 (276)
.+... ........|.++|..+.++|=+..++..+.|-+++||... ...++..+. .+...+++++|||.- ..
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~---~~~~~v~~vaWSptrpav 456 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD---SSPDYVTDVAWSPTRPAV 456 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh---hccceeeeeEEcCcCceE
Confidence 33322 1122455678899999999977555555559999999987 667777776 466779999999976 56
Q ss_pred EEEecCCCCC
Q 023822 266 VISGRVSPFS 275 (276)
Q Consensus 266 l~~~~~dg~v 275 (276)
++++..||.+
T Consensus 457 F~~~d~~G~l 466 (555)
T KOG1587|consen 457 FATVDGDGNL 466 (555)
T ss_pred EEEEcCCCce
Confidence 7888888864
No 231
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=1.2e-13 Score=104.14 Aligned_cols=240 Identities=12% Similarity=0.142 Sum_probs=167.3
Q ss_pred cCCCcEEEEEEcCCCCEEEEeecC---CeEEEEEccC--Ceee--eeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822 32 DYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTA--ATCL--KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104 (276)
Q Consensus 32 ~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~ 104 (276)
.+.+.++-|+|+|+++.|.++-.+ |.|..|.++. |+.. ........+.+.+++++++++++++... .|.|.
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~--~g~v~ 114 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYH--SGSVS 114 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEcc--CceEE
Confidence 356778899999999999888654 6777777764 4432 2222233345889999999999999885 79999
Q ss_pred EEEccC-Cceee--eecccCcc----------eEEEEeccCCCEEEEeeC-CCeEEEEeccCceeeeeE-----eecCCC
Q 023822 105 LLSLHD-NKYLR--YFKGHHDR----------VVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLL-----RVQGRP 165 (276)
Q Consensus 105 ~~d~~~-~~~~~--~~~~~~~~----------i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~-----~~~~~~ 165 (276)
++-++. |.... ....|.+. +....+.|++++|++.+. -.+|.+|++..++....- ...+.+
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR 194 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR 194 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc
Confidence 999865 32211 12224444 788899999999888765 347999999976544322 455678
Q ss_pred eeEecCCCcEEEEee--CCeEEEEecccCCC--CCeeeee-ec---CCCCCceEEEECCCCcEEEEeec-CCcEEEEECC
Q 023822 166 AAAYDDQGLVFAVAF--GGYIRMFDARKYEK--GPFDIFS-VG---GDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSF 236 (276)
Q Consensus 166 ~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~--~~~~~~~-~~---~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~ 236 (276)
.+.|+|++++..+-. +++|.+|....... ..++... ++ ........|.++|||++|+++.. ...|.+|.+.
T Consensus 195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 999999999988777 89999999887421 1111111 11 12345677999999999998753 3478888765
Q ss_pred CC-cEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822 237 RG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP 273 (276)
Q Consensus 237 ~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 273 (276)
.. ..+......+.+....+.+.|+|+|++|+++..++
T Consensus 275 ~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s 312 (346)
T COG2706 275 PDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS 312 (346)
T ss_pred CCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC
Confidence 33 33433333223445588999999999999998875
No 232
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.71 E-value=1.5e-15 Score=119.35 Aligned_cols=212 Identities=13% Similarity=0.161 Sum_probs=144.4
Q ss_pred EEEEcCCCCEEEEeecCCeEEEEEccCCee----eeeeeeeeeceEEEEE-----eccCCeEEEeccCCCCCceEEEEcc
Q 023822 39 SMDFHKSSSYLVTASDDESIRLYDVTAATC----LKTINSKKYGVDLVCF-----TSHPTTVIYSSKNGWDESLRLLSLH 109 (276)
Q Consensus 39 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~~~~d~~i~~~d~~ 109 (276)
...++-.|.+|+-.- ...+++|+...+.. +....-......+-.| .+.+--++++-. -|.+.+.|..
T Consensus 128 ~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~---tGqvq~idp~ 203 (636)
T KOG2394|consen 128 NTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFT---TGQVQLIDPI 203 (636)
T ss_pred eccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeec---cCceEEecch
Confidence 333344555554432 24588888764321 1111111112333334 345556777776 8899999876
Q ss_pred CCceeeeec----ccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCc--------------e--------------ee
Q 023822 110 DNKYLRYFK----GHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAE--------------K--------------CQ 156 (276)
Q Consensus 110 ~~~~~~~~~----~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~--------------~--------------~~ 156 (276)
..+..+.+. -.+..++++.|-|.+. .|+.+-.+|.+++||.... . ++
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 643222121 1246799999998554 7778888999999975311 0 01
Q ss_pred eeE--eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEE
Q 023822 157 GLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 233 (276)
Q Consensus 157 ~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 233 (276)
..+ -...+...+|+|||++||+-+ ||.++|||..+.+. .-.+...-+...|++|||||+|+++|++|--|.||
T Consensus 284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eL----lg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVw 359 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQEL----LGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVW 359 (636)
T ss_pred ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHH----HHHHHhhccceEEEEEcCCccEEEecCCcceEEEE
Confidence 111 123456789999999998888 99999999987553 22233444678999999999999999999999999
Q ss_pred ECCCCcEEEEeecCCCCCCceEEEEECC
Q 023822 234 DSFRGTLLSTYNVKPVSRNSTLEASFSP 261 (276)
Q Consensus 234 d~~~~~~~~~~~~~~~~~~~v~~~~~s~ 261 (276)
.+..++.+..-. +|+++|..++|.|
T Consensus 360 Sf~erRVVARGq---GHkSWVs~VaFDp 384 (636)
T KOG2394|consen 360 SFEERRVVARGQ---GHKSWVSVVAFDP 384 (636)
T ss_pred EeccceEEEecc---ccccceeeEeecc
Confidence 999999999988 8999999999997
No 233
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=9.8e-16 Score=129.11 Aligned_cols=199 Identities=18% Similarity=0.222 Sum_probs=150.7
Q ss_pred EEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeee-eeceEEEEEec-cCCeEEEeccCCCCCceEEEEccCCc---
Q 023822 38 SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK-KYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHDNK--- 112 (276)
Q Consensus 38 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~~~d~~~~~--- 112 (276)
.-++|.....+|++++.-..|+|||....++...+... ...++++.-+. .++.+++|.. ||.|++||.+...
T Consensus 1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfa---DGsvRvyD~R~a~~ds 1245 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFA---DGSVRVYDRRMAPPDS 1245 (1387)
T ss_pred eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeec---CCceEEeecccCCccc
Confidence 44678876667777777889999999988877776543 34566665554 3577888877 9999999987653
Q ss_pred eeeeecccCcc--eEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE--e-----ecCCCeeEecCCCcEEEEeeCC
Q 023822 113 YLRYFKGHHDR--VVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL--R-----VQGRPAAAYDDQGLVFAVAFGG 182 (276)
Q Consensus 113 ~~~~~~~~~~~--i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~--~-----~~~~~~~~~~~~~~~l~~~~d~ 182 (276)
.+..++.|+.. |..+.+.++|- .|++|+.||.|++||+|.......+ . +....++..+++..++++|+.+
T Consensus 1246 ~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q 1325 (1387)
T KOG1517|consen 1246 LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQ 1325 (1387)
T ss_pred cceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcc
Confidence 46677889887 99999998775 5999999999999999985322222 1 1237889999999999999999
Q ss_pred eEEEEecccCCCCCeeee--eecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCc
Q 023822 183 YIRMFDARKYEKGPFDIF--SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT 239 (276)
Q Consensus 183 ~i~~~d~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 239 (276)
.|+||++.......+... .+......+.+++|+|-.-.+|+|+.|..|.||......
T Consensus 1326 ~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1326 LIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 999999976543322211 122334567999999999899999999999999876543
No 234
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=4.5e-14 Score=116.06 Aligned_cols=204 Identities=12% Similarity=0.121 Sum_probs=134.5
Q ss_pred eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEE
Q 023822 57 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 136 (276)
Q Consensus 57 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 136 (276)
.|.++|.+.+. ...+..+...+....|+|+++.|+..+.......|.+||+.+++... +....+.+....|+|+|+.|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 47778876444 34455556678999999999999887653224579999998876543 33334445678999999977
Q ss_pred E-EeeCCC--eEEEEeccCceeeeeEe-ecCCCeeEecCCCcEEEEee--C--CeEEEEecccCCCCCeeeeeecCCCCC
Q 023822 137 I-SGSLDR--TVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFAVAF--G--GYIRMFDARKYEKGPFDIFSVGGDISD 208 (276)
Q Consensus 137 ~-~~~~d~--~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~--d--~~i~~~d~~~~~~~~~~~~~~~~~~~~ 208 (276)
+ +...++ .|++||+.+++...... ........|+|+++.++..+ + ..|+++|+.+++.. ...... ..
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~---~lt~~~--~~ 332 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE---RVTFVG--NY 332 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE---EeecCC--CC
Confidence 6 444454 68888998876544332 22344678999998776655 2 35777777664421 112111 23
Q ss_pred ceEEEECCCCcEEEEeecC-C--cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822 209 ANVVKFSNDGRLMLLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS 272 (276)
Q Consensus 209 i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 272 (276)
.....|+|+|++|+..+.+ + .|.++|+.+++... +.. ........|+|||++++..+.+
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~----~~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD----TSLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC----CCCCCCceECCCCCEEEEEEec
Confidence 3457899999999887643 3 58889998876533 331 1122246899999998876654
No 235
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.69 E-value=9.5e-16 Score=120.42 Aligned_cols=162 Identities=10% Similarity=0.131 Sum_probs=116.3
Q ss_pred CCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc
Q 023822 34 NGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 112 (276)
Q Consensus 34 ~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~ 112 (276)
+..|+|+.|-| +...++.+-.+|.++++|.+. .... .-.+....+++..+..... .+ -.+..
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~-t~p~~~~~k~~~~f~i~t~---ks------k~~rN 281 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGA-TAPSYQALKDGDQFAILTS---KS------KKTRN 281 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccC-CCCcccccCCCCeeEEeee---ec------cccCC
Confidence 47899999998 445667777889999998621 1000 0111122234444443322 00 11223
Q ss_pred eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEEEEec
Q 023822 113 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDA 189 (276)
Q Consensus 113 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~ 189 (276)
++..+..-.+.|...+|+|||++||+.++||.++|+|..+.+....+ -..+..|++|+|||++++++. |.-|.||.+
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence 44444445668999999999999999999999999999998876665 456678999999999999998 899999999
Q ss_pred ccCCCCCeeeeeecCCCCCceEEEECC
Q 023822 190 RKYEKGPFDIFSVGGDISDANVVKFSN 216 (276)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~ 216 (276)
...+. +..-.+|..+|+.++|.|
T Consensus 362 ~erRV----VARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 362 EERRV----VARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ccceE----EEeccccccceeeEeecc
Confidence 87553 666788999999999983
No 236
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.4e-15 Score=115.44 Aligned_cols=195 Identities=14% Similarity=0.152 Sum_probs=147.4
Q ss_pred eeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC------Cceeeeec-ccCcceEEEEeccCCCEEEEeeCC
Q 023822 70 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD------NKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLD 142 (276)
Q Consensus 70 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~------~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d 142 (276)
+.+..|.+.|.++.|+.++++|++|+. |..+++|++.. .+++.... .|...|.|++|....+.+++|..+
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGD---D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGD---DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCC---cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 345678999999999999999999998 99999999753 35555443 356899999999989999999999
Q ss_pred CeEEEEeccCceeeeeE-e---ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC
Q 023822 143 RTVLLWDQRAEKCQGLL-R---VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND 217 (276)
Q Consensus 143 ~~i~iwd~~~~~~~~~~-~---~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 217 (276)
++|...|+++.+.+..+ + ...+..+..+|....+++.+ ++.|.+||.+.... +...+...........+.|+|.
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~-~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN-PISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC-CCceeeecCCCccceeeeecCC
Confidence 99999999999988888 2 23577888899887777777 89999999987553 3345555566677889999997
Q ss_pred C-cEEEEeecCCcEEEEECCCCcE-EEEeecCCCCCC---ceEEEEECCCCcEEEE
Q 023822 218 G-RLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRN---STLEASFSPEGMFVIS 268 (276)
Q Consensus 218 ~-~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~---~v~~~~~s~~g~~l~~ 268 (276)
. .+|++.+..+-+.+||.+.... +.......+... .-.++.|+|+|..|.+
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~ms 261 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMS 261 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehh
Confidence 5 6778888888999999865332 222111101111 2256789998876643
No 237
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.5e-14 Score=109.58 Aligned_cols=231 Identities=13% Similarity=0.142 Sum_probs=164.3
Q ss_pred CCCcEEEEEEcCCCC--EEEEeecCCeEEEEEccCCeeeeee------eeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822 33 YNGRISSMDFHKSSS--YLVTASDDESIRLYDVTAATCLKTI------NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104 (276)
Q Consensus 33 h~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~ 104 (276)
-...|..++|..+++ .|...+.|..+..+.+........+ .....+|..+... +..|+++.. +|.+.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~---sG~l~ 128 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVS---SGNLQ 128 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEec---CCcEE
Confidence 356788888876543 4555556777877777665544433 2334556666553 345666666 99999
Q ss_pred EEEccCCc----eeeeecccCcceEEEEeccCCC-EEEEeeCC--CeEEEEeccCceeeeeEee-----------cCCCe
Q 023822 105 LLSLHDNK----YLRYFKGHHDRVVSLSLCSSKD-CFISGSLD--RTVLLWDQRAEKCQGLLRV-----------QGRPA 166 (276)
Q Consensus 105 ~~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d--~~i~iwd~~~~~~~~~~~~-----------~~~~~ 166 (276)
+|....+. ++..+..+ ..+..|.-++... .+++|+.. ..+.+||+...+.+..-.. --+..
T Consensus 129 ~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 129 VRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 99987442 23334333 4456666666555 56668888 7899999998744332211 01235
Q ss_pred eEecCC--CcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEE
Q 023822 167 AAYDDQ--GLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST 243 (276)
Q Consensus 167 ~~~~~~--~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 243 (276)
+.|-+. ...|++++ -+++++||.+.++. |+.. +.-...+++++...|.|+++++|..-|.+..||++.++.+..
T Consensus 208 i~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR-PV~~--fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITRYHQVRLYDTRHQRR-PVAQ--FDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC 284 (412)
T ss_pred ceecCCCCCceEEEEecceeEEEecCcccCc-ceeE--eccccCcceeeeecCCCcEEEEecccchhheecccCceeecc
Confidence 666665 55666666 79999999997654 3333 334466999999999999999999999999999999999887
Q ss_pred -eecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 244 -YNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 244 -~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
+. +..+.|+++..+|.+++|+++|-|.+|
T Consensus 285 ~~k---g~tGsirsih~hp~~~~las~GLDRyv 314 (412)
T KOG3881|consen 285 GLK---GITGSIRSIHCHPTHPVLASCGLDRYV 314 (412)
T ss_pred ccC---CccCCcceEEEcCCCceEEeeccceeE
Confidence 66 788999999999999999999999875
No 238
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=8.5e-14 Score=113.45 Aligned_cols=224 Identities=11% Similarity=0.061 Sum_probs=139.9
Q ss_pred eccCCCcEEEEEEcCCCCEE---EEeecCC--eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCC--CCCc
Q 023822 30 FRDYNGRISSMDFHKSSSYL---VTASDDE--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG--WDES 102 (276)
Q Consensus 30 ~~~h~~~v~~~~~~~~~~~l---~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~d~~ 102 (276)
+......+.+-+|+|||+.+ ++...+| .|.+.++.+++... +....+.....+|+|||+.|+...... .+..
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLF 258 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence 44445667788999999752 2444443 57788887765433 333344456789999999998876421 1223
Q ss_pred eEEEEccCC---ceeeeecccCcceEEEEeccCCCEEEEee-CCCeEEEE--eccC-ceeeeeE--eecCCCeeEecCCC
Q 023822 103 LRLLSLHDN---KYLRYFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLW--DQRA-EKCQGLL--RVQGRPAAAYDDQG 173 (276)
Q Consensus 103 i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iw--d~~~-~~~~~~~--~~~~~~~~~~~~~~ 173 (276)
+..|++..+ +..+............+|+|||+.|+..+ .+|...+| ++.. +.....+ .........|+|+|
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG 338 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG 338 (428)
T ss_pred EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence 444676653 33333333333456789999999777665 45654444 4432 2222223 22345678999999
Q ss_pred cEEEEee--C--CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec---CCcEEEEECCCCcEEEEeec
Q 023822 174 LVFAVAF--G--GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM---EGHIHVLDSFRGTLLSTYNV 246 (276)
Q Consensus 174 ~~l~~~~--d--~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~ 246 (276)
+.++... + ..|.+||+.+++. ..+......+....|+|||+.|+.... ...|.++|+.+++......
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~-----~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~- 412 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRD-----YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI- 412 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCe-----EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-
Confidence 8887665 2 4799999987653 122222335677899999998876543 3568899988877654443
Q ss_pred CCCCCCceEEEEECCCC
Q 023822 247 KPVSRNSTLEASFSPEG 263 (276)
Q Consensus 247 ~~~~~~~v~~~~~s~~g 263 (276)
..+.+...+|+|-.
T Consensus 413 ---~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 413 ---GSGEKRFPSWGAFP 426 (428)
T ss_pred ---CCCcccCceecCCC
Confidence 34556778898854
No 239
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.67 E-value=1e-12 Score=104.62 Aligned_cols=233 Identities=14% Similarity=0.119 Sum_probs=148.5
Q ss_pred ccccceeeccCCCcEEEEEEcCCCCEEEEee-cCCeEEEEEccC-Ceeeeee--ee-----------eeeceEEEEEecc
Q 023822 23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTAS-DDESIRLYDVTA-ATCLKTI--NS-----------KKYGVDLVCFTSH 87 (276)
Q Consensus 23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~-~~~~~~~--~~-----------~~~~v~~~~~~~~ 87 (276)
.++.+............++++|++++|+++. .+|.|.++++.. +...... .. ......++.++|+
T Consensus 75 ~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd 154 (345)
T PF10282_consen 75 TLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD 154 (345)
T ss_dssp EEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT
T ss_pred eeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC
Confidence 3444444442334456799999999998887 589999999986 4433221 11 1234689999999
Q ss_pred CCeEEEeccCCCCCceEEEEccCCc--ee--eeec-ccCcceEEEEeccCCCEEEEe-eCCCeEEEEecc--Ccee--ee
Q 023822 88 PTTVIYSSKNGWDESLRLLSLHDNK--YL--RYFK-GHHDRVVSLSLCSSKDCFISG-SLDRTVLLWDQR--AEKC--QG 157 (276)
Q Consensus 88 ~~~l~~~~~~~~d~~i~~~d~~~~~--~~--~~~~-~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~--~~~~--~~ 157 (276)
++++++...+ ...|.+|++.... .. ..+. ........+.|+|++++++.. ..+++|.++++. .+.. +.
T Consensus 155 g~~v~v~dlG--~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~ 232 (345)
T PF10282_consen 155 GRFVYVPDLG--ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQ 232 (345)
T ss_dssp SSEEEEEETT--TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEecC--CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEE
Confidence 9999988763 6789999997665 21 1221 234557899999999976555 457889999988 3322 22
Q ss_pred eEee---c-----CCCeeEecCCCcEEEEee--CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee-c
Q 023822 158 LLRV---Q-----GRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-M 226 (276)
Q Consensus 158 ~~~~---~-----~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~ 226 (276)
.+.. . ....+.++|++++|.++. .+.|.+|++.........+............++++|+|++|+++. .
T Consensus 233 ~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 233 TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred EeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence 2211 0 233689999999988887 689999999532211112222222334578999999999999887 4
Q ss_pred CCcEEEEEC--CCCcEEEEeecCCCCCCceEEEEE
Q 023822 227 EGHIHVLDS--FRGTLLSTYNVKPVSRNSTLEASF 259 (276)
Q Consensus 227 dg~i~i~d~--~~~~~~~~~~~~~~~~~~v~~~~~ 259 (276)
++.|.+|++ .+|.+...-... .-....++.|
T Consensus 313 s~~v~vf~~d~~tG~l~~~~~~~--~~~~p~ci~f 345 (345)
T PF10282_consen 313 SNTVSVFDIDPDTGKLTPVGSSV--PIPSPVCIVF 345 (345)
T ss_dssp TTEEEEEEEETTTTEEEEEEEEE--ESSSEEEEEE
T ss_pred CCeEEEEEEeCCCCcEEEecccc--cCCCCEEEeC
Confidence 578999865 577665544311 2344556655
No 240
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.67 E-value=1.4e-14 Score=108.09 Aligned_cols=236 Identities=19% Similarity=0.316 Sum_probs=158.9
Q ss_pred CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe-----eeeeeeee------------eeceEEEEEeccCC--eEEEe
Q 023822 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-----CLKTINSK------------KYGVDLVCFTSHPT--TVIYS 94 (276)
Q Consensus 34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~------------~~~v~~~~~~~~~~--~l~~~ 94 (276)
..-|.++.|...|.+||+|..+|.|.++.-+... ....++.| ...|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3568899999999999999999999999754322 22233333 23688899998764 45555
Q ss_pred ccCCCCCceEEEEccCCcee-----------------------------------eee-cccCcceEEEEeccCCCEEEE
Q 023822 95 SKNGWDESLRLLSLHDNKYL-----------------------------------RYF-KGHHDRVVSLSLCSSKDCFIS 138 (276)
Q Consensus 95 ~~~~~d~~i~~~d~~~~~~~-----------------------------------~~~-~~~~~~i~~~~~~~~~~~l~~ 138 (276)
+. |.+|++|.+...... +.+ ..|+-.|+++.++.|...+++
T Consensus 105 tN---dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS 181 (433)
T KOG1354|consen 105 TN---DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS 181 (433)
T ss_pred cC---CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence 55 999999987542110 001 257778999999999998888
Q ss_pred eeCCCeEEEEeccCceeeeeE-ee---------cCCCeeEecCCC--cEEEEeeCCeEEEEecccCCCC--Ceeeee---
Q 023822 139 GSLDRTVLLWDQRAEKCQGLL-RV---------QGRPAAAYDDQG--LVFAVAFGGYIRMFDARKYEKG--PFDIFS--- 201 (276)
Q Consensus 139 ~~~d~~i~iwd~~~~~~~~~~-~~---------~~~~~~~~~~~~--~~l~~~~d~~i~~~d~~~~~~~--~~~~~~--- 201 (276)
+. |-+|.+|+++-...-..+ .. .-+++..|+|.. .++.+++.|+|++-|+|....- ...++.
T Consensus 182 AD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 182 AD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred cc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 75 778999998744322222 11 124577889864 3444455899999999953210 000111
Q ss_pred -------ecCCCCCceEEEECCCCcEEEEeecCCcEEEEEC-CCCcEEEEeecCCCC---------CCc---eEEEEECC
Q 023822 202 -------VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS-FRGTLLSTYNVKPVS---------RNS---TLEASFSP 261 (276)
Q Consensus 202 -------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~---------~~~---v~~~~~s~ 261 (276)
+..-...|..+.|+++|+|+++-+. -+|++||+ ...+++.++..+... ... -..++|+.
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 1122346788999999999987644 47999998 566677776633211 111 24578999
Q ss_pred CCcEEEEecCCCC
Q 023822 262 EGMFVISGRVSPF 274 (276)
Q Consensus 262 ~g~~l~~~~~dg~ 274 (276)
++.++++|+.+.+
T Consensus 340 ~~~~v~TGsy~n~ 352 (433)
T KOG1354|consen 340 NDSYVMTGSYNNV 352 (433)
T ss_pred CcceEecccccce
Confidence 9999999997654
No 241
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.3e-13 Score=113.23 Aligned_cols=205 Identities=12% Similarity=0.096 Sum_probs=131.2
Q ss_pred eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEE
Q 023822 57 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 136 (276)
Q Consensus 57 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 136 (276)
.+.++|..... .+.+......+....|+|+++.++..........|++||+.+++... +...........|+|||+.|
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 67777865443 34455556678899999999999887653223468999998876532 22223334578999999977
Q ss_pred EE-eeCCCe--EEEEeccCceeeeeEe-ecCCCeeEecCCCcEEEEee--C--CeEEEEecccCCCCCeeeeeecCCCCC
Q 023822 137 IS-GSLDRT--VLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFAVAF--G--GYIRMFDARKYEKGPFDIFSVGGDISD 208 (276)
Q Consensus 137 ~~-~~~d~~--i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~--d--~~i~~~d~~~~~~~~~~~~~~~~~~~~ 208 (276)
+. .+.++. |+++|+.+++...... ........|+|+++.++... + ..|+++|+.+++. ....... ..
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~---~~Lt~~g--~~ 351 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV---SRLTFEG--EQ 351 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEEecCC--CC
Confidence 64 455664 8888888776544332 22345689999998777665 3 3566677765442 1112222 22
Q ss_pred ceEEEECCCCcEEEEeecC-C--cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822 209 ANVVKFSNDGRLMLLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP 273 (276)
Q Consensus 209 i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 273 (276)
....+|+|+|++|+..+.+ + .|.++|+.+++... +.. . .......|+|||++|+..+.++
T Consensus 352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~---~-~~d~~ps~spdG~~I~~~~~~~ 414 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTS---T-RLDESPSVAPNGTMVIYSTTYQ 414 (448)
T ss_pred CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccC---C-CCCCCceECCCCCEEEEEEecC
Confidence 3457899999998876653 3 46667887776533 321 1 1122457999999887766543
No 242
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2e-15 Score=119.08 Aligned_cols=165 Identities=15% Similarity=0.189 Sum_probs=126.4
Q ss_pred eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeee-cccCcceEEEEeccC--CCEEEEeeCCCe
Q 023822 68 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF-KGHHDRVVSLSLCSS--KDCFISGSLDRT 144 (276)
Q Consensus 68 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~--~~~l~~~~~d~~ 144 (276)
..+++.+|.+.|.++.|+.+|..|++|+. |-.+.|||.-..+.+..+ .+|...|.++.|-|. .+++++|..|..
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSD---D~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSD---DTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCC---cceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 34678899999999999999999999998 999999999887777766 589999999999984 558999999999
Q ss_pred EEEEeccCce----------eeeeE--eecCCCeeEecCCC-cE-EEEeeCCeEEEEecccCCCCC------eeeeeecC
Q 023822 145 VLLWDQRAEK----------CQGLL--RVQGRPAAAYDDQG-LV-FAVAFGGYIRMFDARKYEKGP------FDIFSVGG 204 (276)
Q Consensus 145 i~iwd~~~~~----------~~~~~--~~~~~~~~~~~~~~-~~-l~~~~d~~i~~~d~~~~~~~~------~~~~~~~~ 204 (276)
|+++|+...+ ....+ +...+..++..|++ .. ..++.||+|+-||++....-+ ........
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 9999998522 11122 55566778888887 44 444559999999999743211 11111112
Q ss_pred CCCCceEEEECCCC-cEEEEeecCCcEEEEEC
Q 023822 205 DISDANVVKFSNDG-RLMLLTTMEGHIHVLDS 235 (276)
Q Consensus 205 ~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~ 235 (276)
..-...++.++|.. .+|++|+.|-..++||.
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 22356789999964 67899999999999994
No 243
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.65 E-value=3.5e-12 Score=99.61 Aligned_cols=226 Identities=11% Similarity=0.106 Sum_probs=147.0
Q ss_pred EcCCCCEEEEeec----------CCeEEEEEccCCeeeeeeeeeee-------ceEEEEEeccCCeEEEeccCCCCCceE
Q 023822 42 FHKSSSYLVTASD----------DESIRLYDVTAATCLKTINSKKY-------GVDLVCFTSHPTTVIYSSKNGWDESLR 104 (276)
Q Consensus 42 ~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~~~~d~~i~ 104 (276)
++||++.|+++.. +..|.+||..+.+.+.++..... ....++++|+++++++..... +..|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p-~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP-SPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCC-CCEEE
Confidence 9999998877655 78999999999999988875322 234789999999999887522 78999
Q ss_pred EEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceee--e---eEeecCC---CeeEecC-CCcE
Q 023822 105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ--G---LLRVQGR---PAAAYDD-QGLV 175 (276)
Q Consensus 105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~---~~~~~~~---~~~~~~~-~~~~ 175 (276)
+.|+.+++.+..+.- .+...-...+++..+ .-+.||......+...... . .++.... ..-.+.+ ++++
T Consensus 132 VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~ 208 (352)
T TIGR02658 132 VVDLEGKAFVRMMDV-PDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL 208 (352)
T ss_pred EEECCCCcEEEEEeC-CCCcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcE
Confidence 999999999887764 222222222222221 2234554444333221111 1 1111000 0013344 8888
Q ss_pred EEEeeCCeEEEEecccCCCCCe---eeeeec-----CCCCCceEEEECCCCcEEEEee----------cCCcEEEEECCC
Q 023822 176 FAVAFGGYIRMFDARKYEKGPF---DIFSVG-----GDISDANVVKFSNDGRLMLLTT----------MEGHIHVLDSFR 237 (276)
Q Consensus 176 l~~~~d~~i~~~d~~~~~~~~~---~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~ 237 (276)
+..+.+|.|.+.|+........ ...... -....+.-++++|+++.+++.. ..+.|.++|..+
T Consensus 209 ~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 209 VWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred EEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 8888889999999755332211 111111 1223344599999998888743 225799999999
Q ss_pred CcEEEEeecCCCCCCceEEEEECCCCc-EEEEec-CCCCC
Q 023822 238 GTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGR-VSPFS 275 (276)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~-~dg~v 275 (276)
++.+..+. ....+..++++|||+ +|++.. .++.|
T Consensus 289 ~kvi~~i~----vG~~~~~iavS~Dgkp~lyvtn~~s~~V 324 (352)
T TIGR02658 289 GKRLRKIE----LGHEIDSINVSQDAKPLLYALSTGDKTL 324 (352)
T ss_pred CeEEEEEe----CCCceeeEEECCCCCeEEEEeCCCCCcE
Confidence 99999998 456899999999999 777665 45544
No 244
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=7.9e-13 Score=107.83 Aligned_cols=207 Identities=11% Similarity=0.061 Sum_probs=127.6
Q ss_pred CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEE--EeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCC
Q 023822 56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI--YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133 (276)
Q Consensus 56 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 133 (276)
..|.+.|.+.+.. +.+.........-.|+||++.++ ..+..+....|.+.++.+++..+ +....+.....+|+|||
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCC
Confidence 3677777754443 34444455667889999998632 23332224578888998776433 33344455678999999
Q ss_pred CEEEEeeC-CC----eEEEEeccCc---eeeeeEee--cCCCeeEecCCCcEEEEee--CCeEEEE--ecccCCCCCeee
Q 023822 134 DCFISGSL-DR----TVLLWDQRAE---KCQGLLRV--QGRPAAAYDDQGLVFAVAF--GGYIRMF--DARKYEKGPFDI 199 (276)
Q Consensus 134 ~~l~~~~~-d~----~i~iwd~~~~---~~~~~~~~--~~~~~~~~~~~~~~l~~~~--d~~i~~~--d~~~~~~~~~~~ 199 (276)
+.|+..+. +| .+..|++..+ +....... .......|+|+|+.|+..+ ++...+| ++...... .
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~---~ 319 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS---P 319 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc---e
Confidence 98876553 22 3444776652 22222222 2235689999998776655 4544455 44321111 1
Q ss_pred eeecCCCCCceEEEECCCCcEEEEeecC---CcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822 200 FSVGGDISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRV 271 (276)
Q Consensus 200 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 271 (276)
..+......+....|+|||+.|+..+.+ ..|.+||+.+++...... ....+....|+|||++|+..+.
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~----~~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT----SPENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC----CCCCccceEECCCCCEEEEEEC
Confidence 2222333456788999999988876543 369999998887654332 2345677899999998875443
No 245
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.61 E-value=3.9e-16 Score=128.47 Aligned_cols=198 Identities=16% Similarity=0.240 Sum_probs=148.8
Q ss_pred eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEE
Q 023822 68 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLL 147 (276)
Q Consensus 68 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 147 (276)
.+..+.+|...|.|+.|...+.++++++. |..++||..+++.++....+|.+.|+.++.+.+..++++++.|..|++
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsd---d~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSD---DRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCc---cceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 34456688899999999999999999998 999999999999999999999999999999998889999999999999
Q ss_pred EeccCceeeeeE--eecCCCeeEecCCCcEEEEeeCCeEEEEecccC-CC-C--Ce--------eee-------------
Q 023822 148 WDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKY-EK-G--PF--------DIF------------- 200 (276)
Q Consensus 148 wd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~-~~-~--~~--------~~~------------- 200 (276)
|.+..+.++..+ +.+.++.++|+|-. +++.||++++||.+-. .. . +. ...
T Consensus 259 Wrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred EecCCCchHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence 999999999888 66679999999976 4444899999998821 10 0 00 000
Q ss_pred -eecCCCCCceEEEECCCCcEEEEee-----------cCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCC-cEEE
Q 023822 201 -SVGGDISDANVVKFSNDGRLMLLTT-----------MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG-MFVI 267 (276)
Q Consensus 201 -~~~~~~~~i~~~~~~~~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~ 267 (276)
........+..++|..++-.+++.+ .+-.+.+|++.+|.+.+... +|...+..+.++|-+ +...
T Consensus 336 ~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~---ghsd~~yvLd~Hpfn~ri~m 412 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM---GHSDEVYVLDVHPFNPRIAM 412 (1113)
T ss_pred CCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc---ccccceeeeeecCCCcHhhh
Confidence 0000111222333433333333333 34567889999999888888 788899999999855 3445
Q ss_pred EecCCCC
Q 023822 268 SGRVSPF 274 (276)
Q Consensus 268 ~~~~dg~ 274 (276)
+++.||-
T Consensus 413 sag~dgs 419 (1113)
T KOG0644|consen 413 SAGYDGS 419 (1113)
T ss_pred hccCCCc
Confidence 6666664
No 246
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.60 E-value=1.1e-14 Score=128.70 Aligned_cols=224 Identities=16% Similarity=0.198 Sum_probs=171.2
Q ss_pred eccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeee-eeeceEEEEEeccCCeEEEeccCCCCCceEEEEc
Q 023822 30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 108 (276)
Q Consensus 30 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~ 108 (276)
++.|-..|.++.=+|...+-+||+.||.+++|....++.+..++. .+..|+.+.|+.+|+.+.++.. ||.+.+|.+
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~---dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDG---DGDLSLWQA 2280 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeecc---CCceeeccc
Confidence 445567788888889888999999999999999988887776652 3478999999999999988887 999999998
Q ss_pred cCCceeeeecccCcceEEEEeccCCCEEEEeeC---CCeEEEEeccCc---eeeeeEeecCCCeeEecCCCcEEEEee-C
Q 023822 109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL---DRTVLLWDQRAE---KCQGLLRVQGRPAAAYDDQGLVFAVAF-G 181 (276)
Q Consensus 109 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~-d 181 (276)
. .++....+.|.....++.|-. ..+++++. ++.+.+||..-. ..+.+-|.++..++++-|...++.+|+ +
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred C-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCc
Confidence 7 677778888999988888865 55666654 678999997643 344444888899999999998888888 8
Q ss_pred CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCce----EEE
Q 023822 182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST----LEA 257 (276)
Q Consensus 182 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v----~~~ 257 (276)
|.|++||++..+. +..++. +. ...++++|+..|.++||++..-..++.+.....+.+-. ..+
T Consensus 2358 G~v~l~D~rqrql----~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~ 2423 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQL----RHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQI 2423 (2439)
T ss_pred CcEEEeehHHHHH----HHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCcee
Confidence 9999999997553 222211 44 55789999999999999999888887776432222211 112
Q ss_pred EECCCCcEEEEecCCCC
Q 023822 258 SFSPEGMFVISGRVSPF 274 (276)
Q Consensus 258 ~~s~~g~~l~~~~~dg~ 274 (276)
.. -.+..|.+++.||+
T Consensus 2424 ~v-~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2424 NV-GQCNRIFSCGADGT 2439 (2439)
T ss_pred ee-ccCceEEEecCCCC
Confidence 22 23457888888875
No 247
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=5.5e-14 Score=114.59 Aligned_cols=233 Identities=12% Similarity=0.132 Sum_probs=173.5
Q ss_pred CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe---------------eeeeeeeeeeceEEEEEeccCCeEEEeccCC
Q 023822 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT---------------CLKTINSKKYGVDLVCFTSHPTTVIYSSKNG 98 (276)
Q Consensus 34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 98 (276)
.....|++|+.+..++|+|+.||.+++..+.+.. .-+++.+|+..|..+.|+.+.+.+-++..
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt-- 91 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT-- 91 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC--
Confidence 3567899999999999999999999999876421 22456889999999999999999988888
Q ss_pred CCCceEEEEccCCceeeee--cccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee-eEeecCCCeeEecCCCcE
Q 023822 99 WDESLRLLSLHDNKYLRYF--KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-LLRVQGRPAAAYDDQGLV 175 (276)
Q Consensus 99 ~d~~i~~~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~ 175 (276)
+|.|.+|-+-.+.-...+ ....+.|.+|+|+.+|..++....||.|.+=.++..+.-. .+.......+.|++|.+.
T Consensus 92 -~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~ 170 (1189)
T KOG2041|consen 92 -SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQ 170 (1189)
T ss_pred -CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHH
Confidence 999999999887644433 2345678999999999999999999999887776654332 234444557899999987
Q ss_pred EEEee-CCeEEEEecccCCCCCeee---e----eecCCCCCceEEEEC--------CCCcEEEEeecCCcEEEEECCCCc
Q 023822 176 FAVAF-GGYIRMFDARKYEKGPFDI---F----SVGGDISDANVVKFS--------NDGRLMLLTTMEGHIHVLDSFRGT 239 (276)
Q Consensus 176 l~~~~-d~~i~~~d~~~~~~~~~~~---~----~~~~~~~~i~~~~~~--------~~~~~l~~~~~dg~i~i~d~~~~~ 239 (276)
+..+. +|.+.+||.+..-...... . .+...+..+..+.|. |+...|+++-..|.+.|-.-.+..
T Consensus 171 ~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~ 250 (1189)
T KOG2041|consen 171 ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP 250 (1189)
T ss_pred HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence 77666 8999999986532111100 0 011112234555553 477889999999999998766655
Q ss_pred EEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822 240 LLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP 273 (276)
Q Consensus 240 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 273 (276)
....+. ..-.+..+.|+|+|..||.++.+.
T Consensus 251 ~Pvv~d----tgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 251 EPVVVD----TGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred CCeEEe----cccEeecceecCCCcEEEEccCcc
Confidence 555555 346788999999999999998764
No 248
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.59 E-value=5e-11 Score=90.64 Aligned_cols=220 Identities=15% Similarity=0.128 Sum_probs=146.8
Q ss_pred EEEEcC-CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeee
Q 023822 39 SMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF 117 (276)
Q Consensus 39 ~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~ 117 (276)
++.|.+ ++.++++--..+.|..|+..+++... +.... ...+.+...+..++++. .+.+.++|+.+++.....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~----~~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVAD----SGGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEE----TTCEEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEE----cCceEEEecCCCcEEEEe
Confidence 578888 66677776678999999998776533 22222 66777773335555555 455666698888654433
Q ss_pred cc-----cCcceEEEEeccCCCEEEEeeCC--------CeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee--C
Q 023822 118 KG-----HHDRVVSLSLCSSKDCFISGSLD--------RTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF--G 181 (276)
Q Consensus 118 ~~-----~~~~i~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~--d 181 (276)
.. .....+.+++.|+|++.++.... |.|..++.. ++..... .....+.++|+|+++.|..+. .
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccc
Confidence 32 34568899999999977776543 567777777 4443333 445566899999998766554 7
Q ss_pred CeEEEEecccCCCCCe--e-eeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEE
Q 023822 182 GYIRMFDARKYEKGPF--D-IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 258 (276)
Q Consensus 182 ~~i~~~d~~~~~~~~~--~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 258 (276)
+.|..|++........ . ...........-.+++..+|++.++....+.|.+++.. |+.+..+.. ....+++++
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~---p~~~~t~~~ 231 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL---PVPRPTNCA 231 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE----SSSSEEEEE
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC---CCCCEEEEE
Confidence 8999999875332111 1 12222222347789999999988877788999999966 999988884 345899999
Q ss_pred E-CCCCcEEEEec
Q 023822 259 F-SPEGMFVISGR 270 (276)
Q Consensus 259 ~-s~~g~~l~~~~ 270 (276)
| -++.+.|+..+
T Consensus 232 fgg~~~~~L~vTt 244 (246)
T PF08450_consen 232 FGGPDGKTLYVTT 244 (246)
T ss_dssp EESTTSSEEEEEE
T ss_pred EECCCCCEEEEEe
Confidence 9 46766665543
No 249
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.59 E-value=3.3e-12 Score=101.75 Aligned_cols=192 Identities=15% Similarity=0.153 Sum_probs=134.8
Q ss_pred CEE-EEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceE
Q 023822 47 SYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV 125 (276)
Q Consensus 47 ~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~ 125 (276)
+++ ++-..++.|.+.|..+.+.+..+......-..+.++||++++++++. |+.|.++|+.+++.+.+++... ...
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r---dg~vsviD~~~~~~v~~i~~G~-~~~ 81 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR---DGTVSVIDLATGKVVATIKVGG-NPR 81 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET---TSEEEEEETTSSSEEEEEE-SS-EEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC---CCeEEEEECCcccEEEEEecCC-Ccc
Confidence 444 45567899999999999999998865444455789999999999987 9999999999999999887544 457
Q ss_pred EEEeccCCCEEEEee-CCCeEEEEeccCceeeeeEeec---------CCCeeEecCCCcEEEEee-C-CeEEEEecccCC
Q 023822 126 SLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQ---------GRPAAAYDDQGLVFAVAF-G-GYIRMFDARKYE 193 (276)
Q Consensus 126 ~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~-d-~~i~~~d~~~~~ 193 (276)
.+++++||++++++. .++.+.++|.++.+.++.+... .+..+..+|....++..- | +.|.+.|....+
T Consensus 82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 899999999888765 5899999999999998887322 223556677777555554 4 888888887753
Q ss_pred CCCeeeeeecCCCCCceEEEECCCCcEEEEe-ecCCcEEEEECCCCcEEEEee
Q 023822 194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYN 245 (276)
Q Consensus 194 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~ 245 (276)
. ...... ..........|+|+++|++++ ..++.|-++|.++++....+.
T Consensus 162 ~--~~~~~i-~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 162 N--LKVTTI-KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp C--EEEEEE-E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred c--cceeee-cccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence 2 222222 233456789999999987665 456789999999988876654
No 250
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.57 E-value=5.6e-13 Score=106.14 Aligned_cols=186 Identities=14% Similarity=0.181 Sum_probs=146.6
Q ss_pred CCCCEEEEeecCCeEEEEEccCCeeeeeeeee---eeceEEEEEe--------------------ccCCeEEEeccCCCC
Q 023822 44 KSSSYLVTASDDESIRLYDVTAATCLKTINSK---KYGVDLVCFT--------------------SHPTTVIYSSKNGWD 100 (276)
Q Consensus 44 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~--------------------~~~~~l~~~~~~~~d 100 (276)
|...++|....||.+++|+..+++..+.+... .+...+..|. .+...++-|.. .
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~---~ 79 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP---Q 79 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC---C
Confidence 45678999999999999999998877776432 2334444442 22334555555 8
Q ss_pred CceEEEEccCCceeeeec--ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe--ecCCCeeEecCCCcEE
Q 023822 101 ESLRLLSLHDNKYLRYFK--GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQGLVF 176 (276)
Q Consensus 101 ~~i~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~l 176 (276)
|.|.+|+...++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+....+.+.... ...+..++++||+.++
T Consensus 80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 999999999999887775 699999999999988899999999999999999998888873 3446689999999888
Q ss_pred EEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC-----CcEEEEe-ecCCcEEEEECCC
Q 023822 177 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-----GRLMLLT-TMEGHIHVLDSFR 237 (276)
Q Consensus 177 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~-~~dg~i~i~d~~~ 237 (276)
++++ ++|++||+++.+. +..+.+|.++|++++|--+ |.+++++ ..+..+.+|-...
T Consensus 160 ~~as-~~ik~~~~~~kev----v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS-RQIKVLDIETKEV----VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc-ceEEEEEccCceE----EEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 7764 8999999998775 7788999999999999877 6776664 3455577776543
No 251
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=2.3e-11 Score=91.97 Aligned_cols=214 Identities=13% Similarity=0.166 Sum_probs=147.6
Q ss_pred CCeEEEEEccCCe--e-eeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC--Cceee--eecccCcceEEE
Q 023822 55 DESIRLYDVTAAT--C-LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD--NKYLR--YFKGHHDRVVSL 127 (276)
Q Consensus 55 d~~i~iwd~~~~~--~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~--~~~~~--~~~~~~~~i~~~ 127 (276)
+.-|++|++.+.+ . ...+-.....++-++|+|+.++|.++...+.+|.|..|.++. |+... .......+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 4569999987322 1 112223455788999999999999998865678888888775 43221 111122334789
Q ss_pred EeccCCCEEEEeeC-CCeEEEEeccC-ceeee---eE-eecC----------CCeeEecCCCcEEEEee--CCeEEEEec
Q 023822 128 SLCSSKDCFISGSL-DRTVLLWDQRA-EKCQG---LL-RVQG----------RPAAAYDDQGLVFAVAF--GGYIRMFDA 189 (276)
Q Consensus 128 ~~~~~~~~l~~~~~-d~~i~iwd~~~-~~~~~---~~-~~~~----------~~~~~~~~~~~~l~~~~--d~~i~~~d~ 189 (276)
++++++++++++.. -|.|.++-++. +.... .+ +... .....+.|+++++++.. ...|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999888876 47899999875 32222 11 2222 44678999999998887 588999999
Q ss_pred ccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee-cCCcEEEEECCCC-cEEEEeecC---C---CCCCceEEEEECC
Q 023822 190 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRG-TLLSTYNVK---P---VSRNSTLEASFSP 261 (276)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~-~~~~~~~~~---~---~~~~~v~~~~~s~ 261 (276)
..+...+.....+ ........|+|+|++++.+... -+++|.+|..... ..+..++.. + .......++..+|
T Consensus 175 ~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 175 DDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred ccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence 9777655555554 3455788999999999987766 4889999998763 222322211 1 1234567788999
Q ss_pred CCcEEEEe
Q 023822 262 EGMFVISG 269 (276)
Q Consensus 262 ~g~~l~~~ 269 (276)
||++|+++
T Consensus 254 dGrFLYas 261 (346)
T COG2706 254 DGRFLYAS 261 (346)
T ss_pred CCCEEEEe
Confidence 99999875
No 252
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.55 E-value=7.3e-13 Score=113.74 Aligned_cols=202 Identities=12% Similarity=0.119 Sum_probs=146.2
Q ss_pred EEccCCeeeeeeeeeeeceEEEEEeccC-CeEEEeccCCCCCceEEEEccCC-------ceeeeecccCcceEEEEeccC
Q 023822 61 YDVTAATCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGWDESLRLLSLHDN-------KYLRYFKGHHDRVVSLSLCSS 132 (276)
Q Consensus 61 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~d~~i~~~d~~~~-------~~~~~~~~~~~~i~~~~~~~~ 132 (276)
|+. .|..++.+..|...+..++.++.. .++++++. ||+|++|+.+.- +...++......+.++.+.+.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~---DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~ 1109 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSD---DGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN 1109 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecC---CceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC
Confidence 654 578888898999889898888766 89999998 999999997642 222344445678899999999
Q ss_pred CCEEEEeeCCCeEEEEeccCceeeeeE---------eecCCCeeEe---c--CCCcEEEEee-CCeEEEEecccCCCCCe
Q 023822 133 KDCFISGSLDRTVLLWDQRAEKCQGLL---------RVQGRPAAAY---D--DQGLVFAVAF-GGYIRMFDARKYEKGPF 197 (276)
Q Consensus 133 ~~~l~~~~~d~~i~iwd~~~~~~~~~~---------~~~~~~~~~~---~--~~~~~l~~~~-d~~i~~~d~~~~~~~~~ 197 (276)
++.+|.++.||.|++.+++.....+.. +..+ ..+.+ . .....++.+. -+.|..||++.....
T Consensus 1110 ~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g-~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~-- 1186 (1431)
T KOG1240|consen 1110 GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDG-VVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA-- 1186 (1431)
T ss_pred CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCC-ceEEeecccccccceeEEEEEeccceEEecchhhhhH--
Confidence 999999999999999998863211111 1111 11222 1 1223555555 699999999985532
Q ss_pred eeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCC---cEEEEecC
Q 023822 198 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG---MFVISGRV 271 (276)
Q Consensus 198 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~~~~ 271 (276)
.........+.|++++.+|.+.+++.|+..|.+.+||++-+.++..... ++..++..+..+|-. ...++++.
T Consensus 1187 w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~--P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1187 WRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEH--PARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred HhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccC--cccCCcceEEeeccCCCCceEEEecc
Confidence 1223334557899999999999999999999999999999999888864 355788888777643 45555554
No 253
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=2.1e-11 Score=99.02 Aligned_cols=200 Identities=6% Similarity=-0.021 Sum_probs=130.4
Q ss_pred cEEEEEEcCCCCE-EEEeec---CCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC
Q 023822 36 RISSMDFHKSSSY-LVTASD---DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN 111 (276)
Q Consensus 36 ~v~~~~~~~~~~~-l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~ 111 (276)
.+....|+|||+. ++..+. +..|.++|+.+++...... ..+......|+||++.++.......+..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6778999999984 654433 3579999998876544433 4445667789999998877654333678999998877
Q ss_pred ceeeeecccCcceEEEEeccCCCEEEEeeC-CC--eEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEee-C------
Q 023822 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF-G------ 181 (276)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d------ 181 (276)
+.. .+..+........|+|||+.|+..+. .+ .|.++|+.+++..+...... ....|+|+|+.++... .
T Consensus 268 ~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 268 TLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-NNSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred cEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-cCceECCCCCEEEEEEcCCCcccC
Confidence 643 34434433445689999997776653 23 68888888777644432222 2358999998877665 2
Q ss_pred ---CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC---cEEEEECCCCcEEEEee
Q 023822 182 ---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYN 245 (276)
Q Consensus 182 ---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~ 245 (276)
..|.+.|+.++.. ..+... .......|+|||+.++..+.++ .+.+.++. |.....+.
T Consensus 346 ~~~~~I~v~d~~~g~~-----~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~ 408 (419)
T PRK04043 346 KNTFNLYLISTNSDYI-----RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN-YNKSFLFP 408 (419)
T ss_pred CCCcEEEEEECCCCCe-----EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC-CCeeEEee
Confidence 2688888876542 112111 1233588999999887765432 36677764 44444443
No 254
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.54 E-value=1.7e-13 Score=115.54 Aligned_cols=189 Identities=12% Similarity=0.093 Sum_probs=146.7
Q ss_pred EEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeee----ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceee
Q 023822 40 MDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY----GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR 115 (276)
Q Consensus 40 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~ 115 (276)
..+..+...++..+.++.+.+||...+.....+..... ...-+-++++.-++++++. -+.|.+|+....+...
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv---~~~iivW~~~~dn~p~ 169 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSV---FGEIIVWKPHEDNKPI 169 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccc---cccEEEEeccccCCcc
Confidence 44445667888888899999999987776666544332 2333445566678888887 8999999987544444
Q ss_pred eecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCCcEEEEeeCCeEEEEecccC
Q 023822 116 YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKY 192 (276)
Q Consensus 116 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~ 192 (276)
.+.+|.+.|.++.++.+|+++++.+.|.++++|++++.+..... |...+..+.+.|. ++++++.|.+.++|+....
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~~~ 248 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVNGT 248 (967)
T ss_pred eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccceEEEEEecccc
Confidence 68899999999999999999999999999999999998876622 5666778899998 6777777999999976543
Q ss_pred CCCCeeeeeecCC-CCCceEEEECCCCcEEEEeecCCcEEEEECCC
Q 023822 193 EKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR 237 (276)
Q Consensus 193 ~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 237 (276)
.. .....| ...+..++..++...+++++.|+.+++|++..
T Consensus 249 ~l-----~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 249 QL-----EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ee-----hhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 32 133333 34688999999999999999999999999754
No 255
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=3e-13 Score=107.45 Aligned_cols=192 Identities=14% Similarity=0.160 Sum_probs=148.4
Q ss_pred EEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeec
Q 023822 39 SMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK 118 (276)
Q Consensus 39 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~ 118 (276)
.++++.-.--|+.++....|+-++++.|+.+..+....+.++++..++-...|++|+. +|.|..||.++...+..+.
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~---~g~VEfwDpR~ksrv~~l~ 214 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTE---DGVVEFWDPRDKSRVGTLD 214 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEeccc---CceEEEecchhhhhheeee
Confidence 3455442233444445567999999999999999888889999999999999999998 9999999998876555443
Q ss_pred ------ccCc-----ceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-eecC--CCeeEecCC--CcEEEEeeCC
Q 023822 119 ------GHHD-----RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-RVQG--RPAAAYDDQ--GLVFAVAFGG 182 (276)
Q Consensus 119 ------~~~~-----~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~--~~~~~~~~~--~~~l~~~~d~ 182 (276)
.|.+ .|+++.|+.+|-.+++|+.+|.+.|||++..+++... |... +..+.|.+. +..+++....
T Consensus 215 ~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~ 294 (703)
T KOG2321|consen 215 AASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKR 294 (703)
T ss_pred cccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchH
Confidence 2333 4999999999999999999999999999999887766 4333 446666554 4566666679
Q ss_pred eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCC
Q 023822 183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG 238 (276)
Q Consensus 183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 238 (276)
.+++||-.+++. .... .....++.+++-|++-+++++-.+..+..|=+...
T Consensus 295 ~~kiWd~~~Gk~----~asi-Ept~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 295 ILKIWDECTGKP----MASI-EPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred HhhhcccccCCc----eeec-cccCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 999999998774 3332 34456999999999999999988888887766543
No 256
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=3.7e-11 Score=97.57 Aligned_cols=203 Identities=12% Similarity=0.077 Sum_probs=129.3
Q ss_pred CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCe-EEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCC
Q 023822 56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT-VIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD 134 (276)
Q Consensus 56 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 134 (276)
..|.+-|.+... .+.+.... ......|+|+++. ++..+..+.+..|.++|+.+++...... ..+......|+|||+
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 355565554333 33333333 6788999999985 6554443225689999998887654433 455566788999998
Q ss_pred EEEEe-eCC--CeEEEEeccCceeeeeEeecC-CCeeEecCCCcEEEEeeC----CeEEEEecccCCCCCeeeeeecCCC
Q 023822 135 CFISG-SLD--RTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFAVAFG----GYIRMFDARKYEKGPFDIFSVGGDI 206 (276)
Q Consensus 135 ~l~~~-~~d--~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~ 206 (276)
.++.. +.+ ..|.++|+.+++......... .....|+|+|+.++..++ ..|+++|+.+++... ....+.
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r---lt~~g~- 321 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ---VVFHGK- 321 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe---CccCCC-
Confidence 66543 333 468888988776544333222 345689999987776663 278888887655311 111111
Q ss_pred CCceEEEECCCCcEEEEeecC---------CcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822 207 SDANVVKFSNDGRLMLLTTME---------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP 273 (276)
Q Consensus 207 ~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 273 (276)
....|+|+|++|+..+.. ..|.+.|+.++... .+.. . .......|+|||+.|+..+.++
T Consensus 322 ---~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~---~-~~~~~p~~SPDG~~I~f~~~~~ 389 (419)
T PRK04043 322 ---NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTA---N-GVNQFPRFSSDGGSIMFIKYLG 389 (419)
T ss_pred ---cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCC---C-CCcCCeEECCCCCEEEEEEccC
Confidence 124899999988877643 36888898887653 3331 1 2233578999999887766543
No 257
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=7.5e-12 Score=99.34 Aligned_cols=216 Identities=16% Similarity=0.230 Sum_probs=147.5
Q ss_pred CCCcEEEEEEcCCC--CEEEE-----eecCCeEEEEEccCCeeeeee---eeeeeceEEEEEeccCCeEEEeccCCC---
Q 023822 33 YNGRISSMDFHKSS--SYLVT-----ASDDESIRLYDVTAATCLKTI---NSKKYGVDLVCFTSHPTTVIYSSKNGW--- 99 (276)
Q Consensus 33 h~~~v~~~~~~~~~--~~l~~-----~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~~~~--- 99 (276)
|...|+.+.+||.+ ..+|+ .+.-+.++||..........+ ......=..+.|++-+.-|++......
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 56788999999853 34443 345568999987632211111 111223345788877775544322111
Q ss_pred ------CCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEE--eeCCCeEEEEeccCceeeeeEeecCCCeeEecC
Q 023822 100 ------DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS--GSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD 171 (276)
Q Consensus 100 ------d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 171 (276)
...++++++........+. ..++|.++.|+|+++.|++ |-.-.++.+||++. .++..+...+.+.+.|+|
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~egpRN~~~fnp 321 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFPEGPRNTAFFNP 321 (566)
T ss_pred CccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeCCCCCccceEECC
Confidence 4578888887444444443 5789999999999986665 44567899999874 567777788889999999
Q ss_pred CCcEEEEee----CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec------CCcEEEEECCCCcEE
Q 023822 172 QGLVFAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM------EGHIHVLDSFRGTLL 241 (276)
Q Consensus 172 ~~~~l~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~ 241 (276)
.|++++.+. .|.+.+||+.+.+. +...... .-+-+.|+|||+++++++. |+.++||+. +|..+
T Consensus 322 ~g~ii~lAGFGNL~G~mEvwDv~n~K~----i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l 394 (566)
T KOG2315|consen 322 HGNIILLAGFGNLPGDMEVWDVPNRKL----IAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLL 394 (566)
T ss_pred CCCEEEEeecCCCCCceEEEeccchhh----ccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCcee
Confidence 999887766 49999999998554 3333322 3456899999999998863 788999995 77777
Q ss_pred EEeecCCCCCCceEEEEECC
Q 023822 242 STYNVKPVSRNSTLEASFSP 261 (276)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~s~ 261 (276)
..... ......+.|-|
T Consensus 395 ~~~~f----~sEL~qv~W~P 410 (566)
T KOG2315|consen 395 HEKMF----KSELLQVEWRP 410 (566)
T ss_pred ehhhh----hHhHhheeeee
Confidence 66542 22566677765
No 258
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=5.2e-12 Score=100.26 Aligned_cols=229 Identities=17% Similarity=0.213 Sum_probs=144.0
Q ss_pred cEEEEEEcCCCCEEEEeec-----------CCeEEEEEccCCeeeeeeeeee---eceEEEEEeccCCeEEEeccCCCCC
Q 023822 36 RISSMDFHKSSSYLVTASD-----------DESIRLYDVTAATCLKTINSKK---YGVDLVCFTSHPTTVIYSSKNGWDE 101 (276)
Q Consensus 36 ~v~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~~d~ 101 (276)
.|.-+.|||+.++|+|=+. ...++|||+.+|...+.+.... ..-.-..||.|+++++--. ..
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~----~~ 326 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMT----GN 326 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEec----cc
Confidence 4788999999999998652 2579999999999888886632 2234578999999999877 57
Q ss_pred ceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCC-----CeEEEEeccCceeeee------------------
Q 023822 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD-----RTVLLWDQRAEKCQGL------------------ 158 (276)
Q Consensus 102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~------------------ 158 (276)
.|.||+..+..++..-.-.-..|....|+|.++.||-=... .++.+..+.+++.++.
T Consensus 327 sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd 406 (698)
T KOG2314|consen 327 SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD 406 (698)
T ss_pred eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCc
Confidence 78999876644332212223456677777777666532210 1122222211111000
Q ss_pred -------------------------Eee-----------cCCCeeEecCCCcEEEEee----CCeEEEEecccCCCCCee
Q 023822 159 -------------------------LRV-----------QGRPAAAYDDQGLVFAVAF----GGYIRMFDARKYEKGPFD 198 (276)
Q Consensus 159 -------------------------~~~-----------~~~~~~~~~~~~~~l~~~~----d~~i~~~d~~~~~~~~~~ 198 (276)
+.. ..+...+|.|.|.-+++-. ..++.+|.+++....+..
T Consensus 407 yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l 486 (698)
T KOG2314|consen 407 YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL 486 (698)
T ss_pred EEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh
Confidence 011 1123567888885554433 378899988853332322
Q ss_pred eeeecCCCCCceEEEECCCCcEEEEe---ecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822 199 IFSVGGDISDANVVKFSNDGRLMLLT---TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP 273 (276)
Q Consensus 199 ~~~~~~~~~~i~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 273 (276)
+..+.. ...+.+.|+|.|++++.+ |..|.+.++|+....+...-. ......+.+.|.|.|+|+++++...
T Consensus 487 Vk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~---~eh~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 487 VKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS---PEHFAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred hhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccC---ccccccccceECCCCCEEEEeeehh
Confidence 333322 467889999999998876 457889999987433322221 1224567789999999999988643
No 259
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=3.9e-12 Score=100.91 Aligned_cols=220 Identities=16% Similarity=0.262 Sum_probs=145.0
Q ss_pred cEEEEEEcCCCCEEEEe-----ecC-----CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822 36 RISSMDFHKSSSYLVTA-----SDD-----ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 105 (276)
Q Consensus 36 ~v~~~~~~~~~~~l~~~-----~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~ 105 (276)
.++++.|+|-+++|.+- ..+ -.+++|+++++.....+......-++..|+.|....+-.. .+.+++
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv----~nev~f 150 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLV----SNEVQF 150 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhh----cceEEE
Confidence 68889999999988753 122 3577999998665555544333336888888776554444 667778
Q ss_pred EEccCCceeeeecccCcceE----------------------------------------------------EEEeccCC
Q 023822 106 LSLHDNKYLRYFKGHHDRVV----------------------------------------------------SLSLCSSK 133 (276)
Q Consensus 106 ~d~~~~~~~~~~~~~~~~i~----------------------------------------------------~~~~~~~~ 133 (276)
|++.+.+....- -|...|. .+.|++-|
T Consensus 151 ~~~~~f~~~~~k-l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~g 229 (566)
T KOG2315|consen 151 YDLGSFKTIQHK-LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLG 229 (566)
T ss_pred EecCCccceeee-eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCC
Confidence 877653221110 0122222 34455544
Q ss_pred C-EEEEe--eCC---------CeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee---CCeEEEEecccCCCCCe
Q 023822 134 D-CFISG--SLD---------RTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF---GGYIRMFDARKYEKGPF 197 (276)
Q Consensus 134 ~-~l~~~--~~d---------~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~---d~~i~~~d~~~~~~~~~ 197 (276)
+ +|+.+ ..| .++++.++....+.-.+ ..+++.++.|+|+++-+++.. -..+.+||++..-
T Consensus 230 t~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~---- 305 (566)
T KOG2315|consen 230 TALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP---- 305 (566)
T ss_pred ceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE----
Confidence 4 22222 112 24666666644444444 467788999999997766665 4899999998521
Q ss_pred eeeeecCCCCCceEEEECCCCcEEEEeec---CCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822 198 DIFSVGGDISDANVVKFSNDGRLMLLTTM---EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS 272 (276)
Q Consensus 198 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 272 (276)
++.+ ..++-+++-|+|.|++++.++- -|.|-|||..+.+++..+. .. .-+-+.|+|||+++++++..
T Consensus 306 -v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~---a~--~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 306 -VFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK---AA--NTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred -eEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc---cC--CceEEEEcCCCcEEEEEecc
Confidence 3333 4457788999999999988774 4789999999999988887 22 23447899999999998765
No 260
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.50 E-value=3.1e-12 Score=95.79 Aligned_cols=244 Identities=12% Similarity=0.128 Sum_probs=177.1
Q ss_pred hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEcc-CCeeeeee-eeeeeceEEEEEeccCCeEEEeccCCC
Q 023822 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT-AATCLKTI-NSKKYGVDLVCFTSHPTTVIYSSKNGW 99 (276)
Q Consensus 22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~ 99 (276)
........++||.+.|+....-|...-+++.+.|.+++||--. .++--..+ .....+++++.+.+....|+++-.
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~--- 88 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD--- 88 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe---
Confidence 3445567789999999999999988889999999999999533 34433222 234567999999999999999988
Q ss_pred CCceEEEEcc----CCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe-ecCCCeeEecCCCc
Q 023822 100 DESLRLLSLH----DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGL 174 (276)
Q Consensus 100 d~~i~~~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~ 174 (276)
.|++.-+.+. .....+.+..|...+..+-|+....++++.+.|..+.---.+.+..+..+. ......+.+.-.
T Consensus 89 ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~-- 166 (404)
T KOG1409|consen 89 NGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL-- 166 (404)
T ss_pred cceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--
Confidence 8888888653 445566777899999999999888999999999876555455544333321 111111111111
Q ss_pred EEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEE-EEeecCCCCCC
Q 023822 175 VFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL-STYNVKPVSRN 252 (276)
Q Consensus 175 ~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~ 252 (276)
+...+. .|.|..-.+..... ..+..+.+|..++.+++|.|..+.|++|..|..+.+||+--.+-+ ..+. +|..
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~--~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~---gh~~ 241 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGC--QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQ---GHND 241 (404)
T ss_pred EEEecccccceEEEEEeecCC--ceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeec---cchh
Confidence 222333 56666666554332 236677899999999999999999999999999999998654433 3344 6888
Q ss_pred ceEEEEECCCCcEEEEecCCCCC
Q 023822 253 STLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 253 ~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
.|..+...+.-+.|.++++||-+
T Consensus 242 kV~~l~~~~~t~~l~S~~edg~i 264 (404)
T KOG1409|consen 242 KVQALSYAQHTRQLISCGEDGGI 264 (404)
T ss_pred hhhhhhhhhhheeeeeccCCCeE
Confidence 89999888888999999999854
No 261
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.48 E-value=4.1e-11 Score=93.72 Aligned_cols=213 Identities=14% Similarity=0.143 Sum_probs=151.9
Q ss_pred cCCCCEEEEeecCCeEEEEEccCCeeeeeeee------ee-----eceEEEE-Eec-cCCeEEEeccCCCCCceEEEEcc
Q 023822 43 HKSSSYLVTASDDESIRLYDVTAATCLKTINS------KK-----YGVDLVC-FTS-HPTTVIYSSKNGWDESLRLLSLH 109 (276)
Q Consensus 43 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~~-----~~v~~~~-~~~-~~~~l~~~~~~~~d~~i~~~d~~ 109 (276)
+.||+.++-. .-|.|.+||.++.+....--+ .. .+..-+. |++ +|.+++..+ .|...+.+..
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS----RGkaFi~~~~ 349 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS----RGKAFIMRPW 349 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe----cCcEEEECCC
Confidence 3467766653 457899999876543221100 00 1111111 333 677888877 6888888776
Q ss_pred CCceeeeecccCcceEEEEeccCCCEEEEeeCCC-eEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-CCeEEE
Q 023822 110 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-TVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-GGYIRM 186 (276)
Q Consensus 110 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d~~i~~ 186 (276)
.+-.++. +|...|.-..+..+++-++.|..|| .+-+||.++++..... ....+..+..+++|+.++++. ...|.+
T Consensus 350 ~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~v 427 (668)
T COG4946 350 DGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWV 427 (668)
T ss_pred CCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEE
Confidence 6544432 4677788888888888899999999 8999999998865544 566788999999999988888 488999
Q ss_pred EecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC----cEEEEECCCCcEEEEeecCCCCCCceEEEEECCC
Q 023822 187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG----HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 262 (276)
Q Consensus 187 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 262 (276)
+|+.++.. ...-.....-|+.+.|+|+++++|.+--+| .|+++|+.+++....-. ..+.=.+-+|.||
T Consensus 428 ididngnv----~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT----~ta~DfsPaFD~d 499 (668)
T COG4946 428 IDIDNGNV----RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT----PTAYDFSPAFDPD 499 (668)
T ss_pred EEecCCCe----eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC----CcccccCcccCCC
Confidence 99998764 222233445789999999999999987665 69999998888766554 3344456789999
Q ss_pred CcEEEEec
Q 023822 263 GMFVISGR 270 (276)
Q Consensus 263 g~~l~~~~ 270 (276)
|++|..-+
T Consensus 500 ~ryLYfLs 507 (668)
T COG4946 500 GRYLYFLS 507 (668)
T ss_pred CcEEEEEe
Confidence 99886544
No 262
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.47 E-value=1.5e-11 Score=98.17 Aligned_cols=172 Identities=15% Similarity=0.116 Sum_probs=131.1
Q ss_pred ccCCeEEEeccCCCCCceEEEEccCCceeeeeccc---CcceEEEEec------c--------------CCCEEEEeeCC
Q 023822 86 SHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH---HDRVVSLSLC------S--------------SKDCFISGSLD 142 (276)
Q Consensus 86 ~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~i~~~~~~------~--------------~~~~l~~~~~d 142 (276)
|...+++.... ||.+++|+...++..+.+... .+...+..|. | +-..++-|...
T Consensus 3 ~~~~~~A~~~~---~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 3 PALDYFALSTG---DGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred chhheEeecCC---CCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 34567777777 999999999988876665421 2233333332 2 23467888889
Q ss_pred CeEEEEeccCceeeeeE----eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC
Q 023822 143 RTVLLWDQRAEKCQGLL----RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND 217 (276)
Q Consensus 143 ~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 217 (276)
|.|.+|++..++....+ +...+.++.++.+-..+.++. |..+..|+...... +.........+.+++.+||
T Consensus 80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~----~~~~~~~~~~~~sl~is~D 155 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI----IRIWKEQKPLVSSLCISPD 155 (541)
T ss_pred ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee----eeeeccCCCccceEEEcCC
Confidence 99999999999988777 455677777777665555554 99999999987543 4445556667899999999
Q ss_pred CcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCC-----CcEEEEe
Q 023822 218 GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-----GMFVISG 269 (276)
Q Consensus 218 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~~l~~~ 269 (276)
|+.|++++ +.|++||+++++.+..|. +|.++|++++|..+ |.++.++
T Consensus 156 ~~~l~~as--~~ik~~~~~~kevv~~ft---gh~s~v~t~~f~~~~~g~~G~~vLss 207 (541)
T KOG4547|consen 156 GKILLTAS--RQIKVLDIETKEVVITFT---GHGSPVRTLSFTTLIDGIIGKYVLSS 207 (541)
T ss_pred CCEEEecc--ceEEEEEccCceEEEEec---CCCcceEEEEEEEeccccccceeeec
Confidence 99998886 479999999999999999 89999999999877 6776654
No 263
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.46 E-value=4.9e-10 Score=87.73 Aligned_cols=205 Identities=11% Similarity=0.015 Sum_probs=132.2
Q ss_pred CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEecc---------CCCCCceEEEEccCCceeeeecccCc----
Q 023822 56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK---------NGWDESLRLLSLHDNKYLRYFKGHHD---- 122 (276)
Q Consensus 56 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------~~~d~~i~~~d~~~~~~~~~~~~~~~---- 122 (276)
++|.+.|..+++.+..+.....+- .+ ++|+++.++++.. . +..|.+||..+.+.+..+.-...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~--~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKR--TDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCC--CCEEEEEECccCcEEeEEccCCCchhh
Confidence 789999999999998887654433 34 9999999988875 3 78999999999999888763222
Q ss_pred ---ceEEEEeccCCCEEEEee-C-CCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCe
Q 023822 123 ---RVVSLSLCSSKDCFISGS-L-DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPF 197 (276)
Q Consensus 123 ---~i~~~~~~~~~~~l~~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~ 197 (276)
....++++|||++++... . +..|.+.|+.+++.+..+....-..+.-.++..+++.+.||......+........
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~ 182 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKI 182 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEE
Confidence 234788999999888766 3 68999999999999988865443333333344444444455544443332211111
Q ss_pred eeeee-cC-----CCCCceEEEECC-CCcEEEEeecCCcEEEEECCC-----CcEEEEeecCC----CCCCceEEEEECC
Q 023822 198 DIFSV-GG-----DISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFR-----GTLLSTYNVKP----VSRNSTLEASFSP 261 (276)
Q Consensus 198 ~~~~~-~~-----~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~----~~~~~v~~~~~s~ 261 (276)
..... .. ...+ .|.+ +|++++...+ |.|.+.|+.. .+....+.... -..+...-++++|
T Consensus 183 ~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 183 KPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred eeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence 11111 00 0112 4455 8888777766 9999999543 33333322110 1223344599999
Q ss_pred CCcEEEEe
Q 023822 262 EGMFVISG 269 (276)
Q Consensus 262 ~g~~l~~~ 269 (276)
+++.|++.
T Consensus 258 dg~~lyV~ 265 (352)
T TIGR02658 258 ARDRIYLL 265 (352)
T ss_pred CCCEEEEE
Confidence 99988874
No 264
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.45 E-value=4.8e-10 Score=100.68 Aligned_cols=233 Identities=10% Similarity=0.162 Sum_probs=150.8
Q ss_pred EEEEcCC-CCEEEEeecCCeEEEEEccCCeeeeeeee-e-------------eeceEEEEEeccCCeEEEeccCCCCCce
Q 023822 39 SMDFHKS-SSYLVTASDDESIRLYDVTAATCLKTINS-K-------------KYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (276)
Q Consensus 39 ~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~-------------~~~v~~~~~~~~~~~l~~~~~~~~d~~i 103 (276)
.++++++ ++++++-+.++.|++||.. ++.+..+.. . -.....+++.+++..++++... ++.|
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~--n~~I 648 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE--NHAL 648 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC--CceE
Confidence 5788774 5566777778899999975 444433322 0 1235789999988877777652 6789
Q ss_pred EEEEccCCceeeeeccc-----------------CcceEEEEecc-CCCEEEEeeCCCeEEEEeccCceeeeeE------
Q 023822 104 RLLSLHDNKYLRYFKGH-----------------HDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLL------ 159 (276)
Q Consensus 104 ~~~d~~~~~~~~~~~~~-----------------~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~------ 159 (276)
+.+|+.++. +.++.+- -.....++++| ++.++++...++.|++||..++......
T Consensus 649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 999987754 3332110 11246799999 5666777777899999998776543211
Q ss_pred ----------eecCCCeeEecCCCcEEEEe-e-CCeEEEEecccCCCCCe---------eeeeecC--------CCCCce
Q 023822 160 ----------RVQGRPAAAYDDQGLVFAVA-F-GGYIRMFDARKYEKGPF---------DIFSVGG--------DISDAN 210 (276)
Q Consensus 160 ----------~~~~~~~~~~~~~~~~l~~~-~-d~~i~~~d~~~~~~~~~---------~~~~~~~--------~~~~i~ 210 (276)
.......++++|++..|.++ . ++.|++||+.++..... ....+.. ......
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 01223468999998744444 3 79999999886432100 0000100 112356
Q ss_pred EEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC----------CCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 211 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK----------PVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 211 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
.++++++|+++++-+.++.|++||..++......... .+.-.....++++++|+++++-+.++.|
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence 8999999998888888999999998877665433210 0112357789999999988887777654
No 265
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=3.7e-13 Score=107.01 Aligned_cols=161 Identities=20% Similarity=0.307 Sum_probs=124.0
Q ss_pred eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC-------CeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCC
Q 023822 28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA-------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD 100 (276)
Q Consensus 28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d 100 (276)
..+.||+..|..++--.+.+.+++++.|.+|++|.++. ..+..+++.|+.+|.++.|..+.++++++ |
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-----D 803 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-----D 803 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec-----c
Confidence 45789999999988877888999999999999999863 34677889999999999999999888876 8
Q ss_pred CceEEEEccCCceeeeecc--cCcceEEEEecc--CCCEEE-EeeCCCeEEEEeccCceeeeeEee-------cCCCeeE
Q 023822 101 ESLRLLSLHDNKYLRYFKG--HHDRVVSLSLCS--SKDCFI-SGSLDRTVLLWDQRAEKCQGLLRV-------QGRPAAA 168 (276)
Q Consensus 101 ~~i~~~d~~~~~~~~~~~~--~~~~i~~~~~~~--~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~ 168 (276)
+.|.+||.--++++..+.. ..+.+..+..-+ +...++ .++...+|+++|.+..+....++. ...++++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 9999999877776654321 122233333333 334444 447789999999998877766622 2255899
Q ss_pred ecCCCcEEEEee-CCeEEEEecccCC
Q 023822 169 YDDQGLVFAVAF-GGYIRMFDARKYE 193 (276)
Q Consensus 169 ~~~~~~~l~~~~-d~~i~~~d~~~~~ 193 (276)
..+.|+.++++- +|.|.+.|.++++
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCc
Confidence 999999888887 8999999999876
No 266
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.44 E-value=6e-11 Score=87.24 Aligned_cols=229 Identities=15% Similarity=0.149 Sum_probs=151.8
Q ss_pred CCcEEEEEEcC---CCC-EEEEeecCCeEEEEEccCCeeeeeeeee------eeceEEEEEeccCCeEEEeccCCCCCce
Q 023822 34 NGRISSMDFHK---SSS-YLVTASDDESIRLYDVTAATCLKTINSK------KYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (276)
Q Consensus 34 ~~~v~~~~~~~---~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~~~~d~~i 103 (276)
+..+..+.|.. +|. .|+-+..+|.|.++..........+++- .....++.|++.+..++++.. +|.+
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s---~G~~ 145 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDS---RGSI 145 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcC---CCcE
Confidence 45567777764 455 5667778899999886644433333321 113567889999999988887 8888
Q ss_pred EEEEccCCce--eeeecccCcceEEEEeccC-CCEEEEeeCCCeEEEEeccCce-eee---eEeecCCCeeEecC-CCcE
Q 023822 104 RLLSLHDNKY--LRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEK-CQG---LLRVQGRPAAAYDD-QGLV 175 (276)
Q Consensus 104 ~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~-~~~---~~~~~~~~~~~~~~-~~~~ 175 (276)
.+-+...... ++.++.|.-+++...|+.. .+.+.+|+.|+.+..||+|..+ .+. ..|..++.++.-+| .+.+
T Consensus 146 ~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~ 225 (339)
T KOG0280|consen 146 SGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTY 225 (339)
T ss_pred EEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCce
Confidence 8666554433 4478999999999999864 4589999999999999999433 222 22666777777665 4677
Q ss_pred EEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC--CcEEEEeecCCcEEEEECCCCcEE--EEeecCCCC
Q 023822 176 FAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND--GRLMLLTTMEGHIHVLDSFRGTLL--STYNVKPVS 250 (276)
Q Consensus 176 l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~ 250 (276)
+++|+ |..|++||.|+..++ ++. ..-.+.|..+.++|. +++|+++-..| .+|-+...+... ..+..+..|
T Consensus 226 I~TGsYDe~i~~~DtRnm~kP---l~~-~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~h 300 (339)
T KOG0280|consen 226 IATGSYDECIRVLDTRNMGKP---LFK-AKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIH 300 (339)
T ss_pred EEEeccccceeeeehhcccCc---ccc-CccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccc
Confidence 77777 999999999976653 222 223368999999995 34444444444 667766544322 122222256
Q ss_pred CCceEEEEECCCCcEEEEec
Q 023822 251 RNSTLEASFSPEGMFVISGR 270 (276)
Q Consensus 251 ~~~v~~~~~s~~g~~l~~~~ 270 (276)
.+-+..-.|......||+++
T Consensus 301 dSl~YG~DWd~~~~~lATCs 320 (339)
T KOG0280|consen 301 DSLCYGGDWDSKDSFLATCS 320 (339)
T ss_pred cceeeccccccccceeeeee
Confidence 66666667755555677754
No 267
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.43 E-value=8.3e-12 Score=93.62 Aligned_cols=199 Identities=15% Similarity=0.259 Sum_probs=139.6
Q ss_pred CcEEEEEEcCCCC--EEEEeecCCeEEEEEccCCeee-----------------------------------eee-eeee
Q 023822 35 GRISSMDFHKSSS--YLVTASDDESIRLYDVTAATCL-----------------------------------KTI-NSKK 76 (276)
Q Consensus 35 ~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~-----------------------------------~~~-~~~~ 76 (276)
..|..+.|.++++ .++....|.+|++|.+...... +.+ ..|.
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 4688899988654 5677779999999987532110 001 2466
Q ss_pred eceEEEEEeccCCeEEEeccCCCCCceEEEEccCCce---eeeeccc-----CcceEEEEeccCC-CEEEEeeCCCeEEE
Q 023822 77 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY---LRYFKGH-----HDRVVSLSLCSSK-DCFISGSLDRTVLL 147 (276)
Q Consensus 77 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~---~~~~~~~-----~~~i~~~~~~~~~-~~l~~~~~d~~i~i 147 (276)
.-|.++.++.|...++++. |=.|.+|+++--.. +..++++ ..-|++..|+|.. +.|+-.+..|+|++
T Consensus 165 yhiNSIS~NsD~Et~lSAD----dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 165 YHINSISVNSDKETFLSAD----DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred eEeeeeeecCccceEeecc----ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 7789999999999999987 88999999864322 2222333 3468899999954 57888888999999
Q ss_pred EeccCcee----eeeE--e------------ecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCC----
Q 023822 148 WDQRAEKC----QGLL--R------------VQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGD---- 205 (276)
Q Consensus 148 wd~~~~~~----~~~~--~------------~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~---- 205 (276)
-|+|.... .+.+ . ...+..+.|+++|+++.+-.--+|++||+..... +...+.....
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~-pv~t~~vh~~lr~k 319 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAK-PVETYPVHEYLRSK 319 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCC-cceEEeehHhHHHH
Confidence 99994321 1111 1 1234578999999999988889999999965432 3333322111
Q ss_pred ------CC---CceEEEECCCCcEEEEeecCCcEEEEECCCC
Q 023822 206 ------IS---DANVVKFSNDGRLMLLTTMEGHIHVLDSFRG 238 (276)
Q Consensus 206 ------~~---~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 238 (276)
.. .-..++|+-++.++++|+..+..++++...|
T Consensus 320 Lc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 320 LCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 01 1234789999999999999999999996544
No 268
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.43 E-value=1.6e-11 Score=91.16 Aligned_cols=234 Identities=18% Similarity=0.304 Sum_probs=153.7
Q ss_pred CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe-----eeeeeeeee------------eceEEEEEeccC--CeEEEe
Q 023822 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-----CLKTINSKK------------YGVDLVCFTSHP--TTVIYS 94 (276)
Q Consensus 34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~~ 94 (276)
...|+++.|...|.+|++|...|.|.+|.-+... ....++.|. ..|..+.|..++ .+++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4679999999999999999999999999865432 222344442 357788887654 345555
Q ss_pred ccCCCCCceEEEEccCCc-------------------e-----------------------eeee-cccCcceEEEEecc
Q 023822 95 SKNGWDESLRLLSLHDNK-------------------Y-----------------------LRYF-KGHHDRVVSLSLCS 131 (276)
Q Consensus 95 ~~~~~d~~i~~~d~~~~~-------------------~-----------------------~~~~-~~~~~~i~~~~~~~ 131 (276)
+. |.+|++|.+.... + .+.+ ..|+-.|.++.|+.
T Consensus 106 tN---dktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 106 TN---DKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred cC---CceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 55 9999999875420 0 0011 35667789999999
Q ss_pred CCCEEEEeeCCCeEEEEeccCceeeeeE---ee-------cCCCeeEecCCC--cEEEEeeCCeEEEEecccCCCC--Ce
Q 023822 132 SKDCFISGSLDRTVLLWDQRAEKCQGLL---RV-------QGRPAAAYDDQG--LVFAVAFGGYIRMFDARKYEKG--PF 197 (276)
Q Consensus 132 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~-------~~~~~~~~~~~~--~~l~~~~d~~i~~~d~~~~~~~--~~ 197 (276)
|...++++. |-+|.+|++.....-..+ .. .-+.+..|+|.. .++.+++.|.|++-|+|....- +.
T Consensus 183 D~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 183 DKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred chheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 888887765 778999998754322222 11 124577888864 4555666899999999953210 00
Q ss_pred eee----------eecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCC-cEEEEeecCCC---------CCCce---
Q 023822 198 DIF----------SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPV---------SRNST--- 254 (276)
Q Consensus 198 ~~~----------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~---------~~~~v--- 254 (276)
..+ .+..-...|..+.|+++|+|+++-+. -+|++||.... .++.++..+.. ....|
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 011 11223356888999999999987654 47999998754 34555532110 11222
Q ss_pred EEEEECCCCcEEEEecCC
Q 023822 255 LEASFSPEGMFVISGRVS 272 (276)
Q Consensus 255 ~~~~~s~~g~~l~~~~~d 272 (276)
..+.||.|.+.+.+|+.+
T Consensus 341 FeisfSgd~~~v~sgsy~ 358 (460)
T COG5170 341 FEISFSGDDKHVLSGSYS 358 (460)
T ss_pred EEEEecCCcccccccccc
Confidence 347888888888888765
No 269
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.42 E-value=1.4e-10 Score=84.33 Aligned_cols=224 Identities=14% Similarity=0.105 Sum_probs=148.4
Q ss_pred CCEEEEeecCCeEEEEEccCCee-eeeeeeeeeceEEEEEecc-CCeEEEeccCCCCCceEEEEccCCceeeeecccCcc
Q 023822 46 SSYLVTASDDESIRLYDVTAATC-LKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDR 123 (276)
Q Consensus 46 ~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 123 (276)
..+||.|+..|...+|...+.+. ......+...|.-+.=..+ ...+..++. |.++++.++..+..........-.
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sn---dht~k~~~~~~~s~~~~~h~~~~~ 160 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASN---DHTGKTMVVSGDSNKFAVHNQNLT 160 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccC---CcceeEEEEecCcccceeeccccc
Confidence 35899999999999999886543 3333444443332222112 223445555 888888887655432222111123
Q ss_pred eEEEEeccCCCEEEEeeCCCeEEEEeccCceee-eeE----eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCe
Q 023822 124 VVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ-GLL----RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPF 197 (276)
Q Consensus 124 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~----~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~ 197 (276)
+.+++++++++++++.+....|..|.+...... ..+ .....-+..|+.....+|++. ||++.+||++....+-.
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 789999999999999999999999998754322 122 223344788888888888888 99999999998664322
Q ss_pred e-eeeecCCCCCceEEEECCCC--cEEEEeecCCcEEEEECCCCcEEEEeecCC----CC-CCceEEEEECCCCcEEEEe
Q 023822 198 D-IFSVGGDISDANVVKFSNDG--RLMLLTTMEGHIHVLDSFRGTLLSTYNVKP----VS-RNSTLEASFSPEGMFVISG 269 (276)
Q Consensus 198 ~-~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~-~~~v~~~~~s~~g~~l~~~ 269 (276)
. ....+.|.+.+..+.|++.| .+|+..-.-+.+.+.|+++++..+.+...+ .| ...|....|+.++.-+.+.
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~ 320 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK 320 (344)
T ss_pred hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccc
Confidence 2 23345688899999999876 345555556789999999988766654221 12 2337777888777666555
Q ss_pred cCC
Q 023822 270 RVS 272 (276)
Q Consensus 270 ~~d 272 (276)
+++
T Consensus 321 ~e~ 323 (344)
T KOG4532|consen 321 NEL 323 (344)
T ss_pred cch
Confidence 543
No 270
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.2e-11 Score=101.24 Aligned_cols=233 Identities=11% Similarity=0.184 Sum_probs=170.0
Q ss_pred ccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeee--eeeeceEEEEEeccCCeEEEeccCCCC
Q 023822 23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWD 100 (276)
Q Consensus 23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~d 100 (276)
.+...+++.||.+.|.-+.|+.+.+.|-++..+|.|.+|-+-+|.....+. ..++-|.+++|+.+|..+..... |
T Consensus 60 nLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYe---D 136 (1189)
T KOG2041|consen 60 NLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYE---D 136 (1189)
T ss_pred ccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEc---c
Confidence 456678899999999999999999999999999999999998876544432 34567899999999999999998 9
Q ss_pred CceEEEEccCCcee-eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee-----eE--------eecCCCe
Q 023822 101 ESLRLLSLHDNKYL-RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-----LL--------RVQGRPA 166 (276)
Q Consensus 101 ~~i~~~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-----~~--------~~~~~~~ 166 (276)
|.|.+=.++.++.- +.+++ .....+.|++|.+.++.+-.+|.+++||....-..+ .. ....+..
T Consensus 137 GavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~ 214 (1189)
T KOG2041|consen 137 GAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAE 214 (1189)
T ss_pred CCEEEEeeccceecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccc
Confidence 99988877655432 12222 123478899999988888899999999976431110 00 1122334
Q ss_pred eEec--------CCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC---------C
Q 023822 167 AAYD--------DQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---------G 228 (276)
Q Consensus 167 ~~~~--------~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g 228 (276)
+.|. |+...++++. +|.+.+..-.+... |. ++. ..-.+..+.|+|+|..|++++.+ +
T Consensus 215 i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~-Pv-v~d---tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n 289 (1189)
T KOG2041|consen 215 IEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE-PV-VVD---TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSN 289 (1189)
T ss_pred eeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC-Ce-EEe---cccEeecceecCCCcEEEEccCcccccCccccc
Confidence 4443 5777788887 68888876655332 21 122 12467889999999999998753 2
Q ss_pred cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEe
Q 023822 229 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 269 (276)
Q Consensus 229 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 269 (276)
.|.+|. .-|+.+..++ .....|++++|-..|-.+|.+
T Consensus 290 ~v~Fys-p~G~i~gtlk---vpg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 290 KVHFYS-PYGHIVGTLK---VPGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred eEEEec-cchhheEEEe---cCCceeeeeEEcCCceEEEEE
Confidence 577776 5688888888 577899999998888776655
No 271
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=1.9e-13 Score=113.94 Aligned_cols=224 Identities=17% Similarity=0.187 Sum_probs=165.1
Q ss_pred hhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCC
Q 023822 21 LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD 100 (276)
Q Consensus 21 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d 100 (276)
...++.++.++.|+...+|++|+-+.+.|+.|+..|.|+++++.+|.....+.+|..+++.+.-+.+|..+++.+..+ .
T Consensus 1088 FSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S-~ 1166 (1516)
T KOG1832|consen 1088 FSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS-S 1166 (1516)
T ss_pred HhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecccc-C
Confidence 356788899999999999999999999999999999999999999999999999999999999999999888877621 3
Q ss_pred CceEEEEccC-CceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE------eecCCCeeEecCCC
Q 023822 101 ESLRLLSLHD-NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL------RVQGRPAAAYDDQG 173 (276)
Q Consensus 101 ~~i~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~ 173 (276)
--..+|++.. +.+..++. .-.++.|+.....-+.|+......+||+.+.....++ .....++..|+|+.
T Consensus 1167 PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred chHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc
Confidence 3678999754 33344443 3356788765444445555567899999998877764 12234688999998
Q ss_pred cEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCc
Q 023822 174 LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 253 (276)
Q Consensus 174 ~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 253 (276)
.++.- || .+||++..+. +..+..-. .-..-.|+|.|..++.-+ .|||+++.+.++.... -.
T Consensus 1243 ~LIln--dG--vLWDvR~~~a----Ih~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~-----Ld 1303 (1516)
T KOG1832|consen 1243 TLILN--DG--VLWDVRIPEA----IHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPS-----LD 1303 (1516)
T ss_pred ceEee--Cc--eeeeeccHHH----Hhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHHhcCcc-----cc
Confidence 87653 33 6899987542 32222211 112236999998888765 4999999988877651 22
Q ss_pred eEEEEECCCCcEEEE
Q 023822 254 TLEASFSPEGMFVIS 268 (276)
Q Consensus 254 v~~~~~s~~g~~l~~ 268 (276)
-..+.|+..|..++.
T Consensus 1304 qc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1304 QCAVTFNSTGDVMYA 1318 (1516)
T ss_pred ceEEEeccCccchhh
Confidence 346788888876654
No 272
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.41 E-value=1.6e-11 Score=102.90 Aligned_cols=182 Identities=15% Similarity=0.248 Sum_probs=144.1
Q ss_pred CCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceE
Q 023822 46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV 125 (276)
Q Consensus 46 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~ 125 (276)
+..++-|+-...+..+|+.+.+..+......+.|.-++. +++.+.+|.. .|+|.+-|.++.+.+.++..|.+.|.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t---~G~V~LrD~~s~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDT---RGTVFLRDPNSFETIHTFDAHSGSIS 221 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecc---cceEEeecCCcCceeeeeecccccee
Confidence 456677777777888999888887777666656666665 6788888888 99999999999999999999999998
Q ss_pred EEEeccCCCEEEEeeC---------CCeEEEEeccCceeeeeEeec-CCCeeEecCC--CcEEEEeeCCeEEEEecccCC
Q 023822 126 SLSLCSSKDCFISGSL---------DRTVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQ--GLVFAVAFGGYIRMFDARKYE 193 (276)
Q Consensus 126 ~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~--~~~l~~~~d~~i~~~d~~~~~ 193 (276)
++.. .|+.|++|+. |..|++||+|..+.+..+... ....+.|+|. .++++++..|+..+-|..+..
T Consensus 222 DfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 222 DFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred eeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccC
Confidence 8765 7899999986 556899999998877766333 2345677775 466666678999999965554
Q ss_pred CCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEE
Q 023822 194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234 (276)
Q Consensus 194 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 234 (276)
.++............+..+.++++|+.++.|..+|.|.+|.
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 44444555555556699999999999999999999999997
No 273
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.39 E-value=3.2e-10 Score=88.87 Aligned_cols=122 Identities=11% Similarity=0.150 Sum_probs=101.8
Q ss_pred cCCCcEEEEEEcCCCCEEEEeecCC-eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC
Q 023822 32 DYNGRISSMDFHKSSSYLVTASDDE-SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD 110 (276)
Q Consensus 32 ~h~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~ 110 (276)
+|.+.|.-..+..+++-++.|..|| .+-|+|..+++. ..+...-+.|.++..+++|++++++.. ...|.+.|+.+
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNd---r~el~vididn 432 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVAND---RFELWVIDIDN 432 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcC---ceEEEEEEecC
Confidence 5778888888888888999999999 899999887664 445555678999999999999999987 88999999999
Q ss_pred CceeeeecccCcceEEEEeccCCCEEEEeeCCC----eEEEEeccCceeee
Q 023822 111 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR----TVLLWDQRAEKCQG 157 (276)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~ 157 (276)
++....-+...+-|+.+.|+|+++++|-+--+| .|+++|+..++...
T Consensus 433 gnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 433 GNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD 483 (668)
T ss_pred CCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence 987666566678899999999999999876655 69999998876543
No 274
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.39 E-value=2.7e-11 Score=89.01 Aligned_cols=199 Identities=15% Similarity=0.090 Sum_probs=134.7
Q ss_pred EEEEEEcCCCCEEEEeecCCeEEEEEccCCee--eeeeeeeeeceEEEEEeccCC-eEEEeccCCCCCceEEEEccC-Cc
Q 023822 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATC--LKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHD-NK 112 (276)
Q Consensus 37 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~~~d~~~-~~ 112 (276)
..++.|++.+..++++-.+|.+.+-+...... ++.++.|+.+.+-..|+.... .+.+|+. |+.+.-||++. ++
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgD---D~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGD---DGSLSCWDIRIPKT 200 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCC---CceEEEEEecCCcc
Confidence 45778888888899998999988666554433 447889999999999987554 5566666 99999999983 33
Q ss_pred eeee-ecccCcceEEEEecc-CCCEEEEeeCCCeEEEEeccC-ceeeeeE-eecCCCeeEecCC--CcEEEEeeCCeEEE
Q 023822 113 YLRY-FKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRA-EKCQGLL-RVQGRPAAAYDDQ--GLVFAVAFGGYIRM 186 (276)
Q Consensus 113 ~~~~-~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~-~~~~~~~-~~~~~~~~~~~~~--~~~l~~~~d~~i~~ 186 (276)
.+.. .+.|...|.++.-+| .+.++++|++|..|++||.|+ ++++..- ..+++..+..+|. +++++++.-+-.++
T Consensus 201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki 280 (339)
T KOG0280|consen 201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKI 280 (339)
T ss_pred eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceE
Confidence 3433 456888999998876 466999999999999999995 4554443 4466778888874 35666666555677
Q ss_pred EecccCCCC-CeeeeeecCCCCCceEEEECCCCcEEEEee-cCCcEE-EEECCCC
Q 023822 187 FDARKYEKG-PFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIH-VLDSFRG 238 (276)
Q Consensus 187 ~d~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~-i~d~~~~ 238 (276)
-+....... .........|.+-...-.|.....+||+++ .|+.++ +|-.-++
T Consensus 281 ~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 281 LDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred EEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 776654432 111222334444444445544445677765 466644 6654443
No 275
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.36 E-value=5.4e-10 Score=88.15 Aligned_cols=220 Identities=17% Similarity=0.219 Sum_probs=154.4
Q ss_pred CcEEEEEEcCCC--CEEEE-----eecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccC------CC--
Q 023822 35 GRISSMDFHKSS--SYLVT-----ASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN------GW-- 99 (276)
Q Consensus 35 ~~v~~~~~~~~~--~~l~~-----~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~------~~-- 99 (276)
..|...+|+|.+ ..||. .+.++.+++|.+..+..+.+-...+..-..+.|++.|+++++-... ++
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence 568888899853 34443 4567899999998877776665555556678999999988764321 00
Q ss_pred CCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEee--CCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEE
Q 023822 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS--LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFA 177 (276)
Q Consensus 100 d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 177 (276)
...++++++........ ....++|...+|.|.++.|++.+ .+..+.++|++.. ....+.....+.+.|+|.++++.
T Consensus 254 esnLyl~~~~e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rNT~~fsp~~r~il 331 (561)
T COG5354 254 ESNLYLLRITERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRNTIFFSPHERYIL 331 (561)
T ss_pred cceEEEEeeccccccee-ccccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcccccccccCcccEEE
Confidence 46788888875443333 25688999999999998776655 6788999999987 55555667778899999998877
Q ss_pred Eee----CCeEEEEecccCCCCCeeee-eecCCCCCceEEEECCCCcEEEEee------cCCcEEEEECCCCcEEEEeec
Q 023822 178 VAF----GGYIRMFDARKYEKGPFDIF-SVGGDISDANVVKFSNDGRLMLLTT------MEGHIHVLDSFRGTLLSTYNV 246 (276)
Q Consensus 178 ~~~----d~~i~~~d~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~ 246 (276)
... .|.+.+||...... .. .+.+. ...-+.|+|+++++.+.. .|..|.|||+......
T Consensus 332 ~agF~nl~gni~i~~~~~rf~----~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f----- 400 (561)
T COG5354 332 FAGFDNLQGNIEIFDPAGRFK----VAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF----- 400 (561)
T ss_pred EecCCccccceEEeccCCceE----EEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh-----
Confidence 655 48999999876332 22 23222 345578999999887764 4788999997543322
Q ss_pred CCCCCCceEEEEECCCCcEEEEecCCC
Q 023822 247 KPVSRNSTLEASFSPEGMFVISGRVSP 273 (276)
Q Consensus 247 ~~~~~~~v~~~~~s~~g~~l~~~~~dg 273 (276)
..+.+.|.|.|++..+.+.++
T Consensus 401 ------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 401 ------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ------hhhhccccCCcccceeeccCC
Confidence 334567777777766665543
No 276
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.36 E-value=1.3e-09 Score=96.34 Aligned_cols=232 Identities=15% Similarity=0.181 Sum_probs=156.2
Q ss_pred CCCcEEEEEEcCCCCEEEEeecCCeEEEE----EccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEc
Q 023822 33 YNGRISSMDFHKSSSYLVTASDDESIRLY----DVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 108 (276)
Q Consensus 33 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~ 108 (276)
..+.|.++.|-++...++.+..+|.|.+. +..... +.....-...|.+++|+||...++.++. ++++.+..-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~---~~~l~~mt~ 149 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTG---EGNLLLMTR 149 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeC---CCEEEEEec
Confidence 34689999999999999999999999999 544332 3333344668999999999999999987 788777642
Q ss_pred cC-----------------------Cceeeeecc------------------------cCcceEEEEeccCCCEEEEeeC
Q 023822 109 HD-----------------------NKYLRYFKG------------------------HHDRVVSLSLCSSKDCFISGSL 141 (276)
Q Consensus 109 ~~-----------------------~~~~~~~~~------------------------~~~~i~~~~~~~~~~~l~~~~~ 141 (276)
.= |+....|.+ ..+.-..++|-.||.+||+.+.
T Consensus 150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~ 229 (928)
T PF04762_consen 150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSV 229 (928)
T ss_pred cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEE
Confidence 10 000001100 2224457889999999998875
Q ss_pred ---C---CeEEEEeccCceeeeeEe-e-cCCCeeEecCCCcEEEEee----CCeEEEEecccCCCCCeeeeeecCCCCCc
Q 023822 142 ---D---RTVLLWDQRAEKCQGLLR-V-QGRPAAAYDDQGLVFAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDA 209 (276)
Q Consensus 142 ---d---~~i~iwd~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i 209 (276)
. ..+++|+-+ +.....-. . +--..++|-|.|.++|+.. ...|.+|.-...+...+.+. .......+
T Consensus 230 ~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~-~~~~~~~v 307 (928)
T PF04762_consen 230 EPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLR-FDPEEEKV 307 (928)
T ss_pred EcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecC-CCCCCcee
Confidence 2 479999965 44333332 1 1134789999999999987 26777787665554433222 23455678
Q ss_pred eEEEECCCCcEEEEeecCCcEEEEECCCCcE--EEEeecCCCCCCceEEEEECCCC-cEEEEecCCC
Q 023822 210 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL--LSTYNVKPVSRNSTLEASFSPEG-MFVISGRVSP 273 (276)
Q Consensus 210 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg 273 (276)
..+.|++++..||..-.|. |.+|-..+..- .+.+.. .....+..+.|+|.. ..|...+.+|
T Consensus 308 ~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~--~~~~~~~~~~Wdpe~p~~L~v~t~~g 371 (928)
T PF04762_consen 308 IELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRF--SSSESVNFVKWDPEKPLRLHVLTSNG 371 (928)
T ss_pred eEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEc--cCCCCCCceEECCCCCCEEEEEecCC
Confidence 9999999999999977665 99999888764 233332 123345559999954 3455555533
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.36 E-value=1.9e-09 Score=96.86 Aligned_cols=200 Identities=16% Similarity=0.231 Sum_probs=131.2
Q ss_pred EEEEEEcCCCCEEEEee-cCCeEEEEEccCCeeeeeeeee-----------------eeceEEEEEeccCCeEEEeccCC
Q 023822 37 ISSMDFHKSSSYLVTAS-DDESIRLYDVTAATCLKTINSK-----------------KYGVDLVCFTSHPTTVIYSSKNG 98 (276)
Q Consensus 37 v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~l~~~~~~~ 98 (276)
...+++.++++.|+++. .++.|+++|..++.. .++.+. -.....++++|++..++++...
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~- 703 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG- 703 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-
Confidence 56789999888666554 457899999876653 332110 1134679999965555554432
Q ss_pred CCCceEEEEccCCceeeeecc---------------cCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeEe--
Q 023822 99 WDESLRLLSLHDNKYLRYFKG---------------HHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLR-- 160 (276)
Q Consensus 99 ~d~~i~~~d~~~~~~~~~~~~---------------~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~-- 160 (276)
++.|++||..++... .+.+ .-.....++++|+++ ++++-+.++.|++||+.++.......
T Consensus 704 -~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~ 781 (1057)
T PLN02919 704 -QHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGD 781 (1057)
T ss_pred -CCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence 889999998776432 1111 112356799999988 45555667899999998754321110
Q ss_pred ---------------------ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeee---------eecCCCCCc
Q 023822 161 ---------------------VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIF---------SVGGDISDA 209 (276)
Q Consensus 161 ---------------------~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~---------~~~~~~~~i 209 (276)
......++++++|.++++.. ++.|++||..++......-. .....-...
T Consensus 782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P 861 (1057)
T PLN02919 782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEP 861 (1057)
T ss_pred cccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCc
Confidence 11234788999998777766 89999999876432100000 001122357
Q ss_pred eEEEECCCCcEEEEeecCCcEEEEECCCCcE
Q 023822 210 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL 240 (276)
Q Consensus 210 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 240 (276)
..++++++|+++++-+.++.|++||+.+++.
T Consensus 862 ~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 862 AGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred eEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 7899999999888888899999999988765
No 278
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=1.5e-11 Score=104.10 Aligned_cols=145 Identities=14% Similarity=0.115 Sum_probs=120.3
Q ss_pred EcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceee-eeccc
Q 023822 42 FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR-YFKGH 120 (276)
Q Consensus 42 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~-~~~~~ 120 (276)
++++.-++++|+.-+.|.+|+....+....+.+|++.+..+.++.++.++++.+. |..+++|++++.+... ..-+|
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd---DRsiRlW~i~s~~~~~~~~fgH 217 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD---DRSIRLWPIDSREVLGCTGFGH 217 (967)
T ss_pred ccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec---CcceeeeecccccccCcccccc
Confidence 4556668899999999999998744433468899999999999999999999999 9999999999988766 67789
Q ss_pred CcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCCcEEEEee-CCeEEEEecccC
Q 023822 121 HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKY 192 (276)
Q Consensus 121 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~ 192 (276)
...++.++|.|+ .+++++.|-+.++|+....+.. .+ ....+..++..+...+++++. |+.+++||+...
T Consensus 218 saRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 218 SARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred cceeEEEEeccc--eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 999999999998 8999999999999976654433 44 334566788888887776666 899999998653
No 279
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.33 E-value=6.5e-11 Score=90.49 Aligned_cols=156 Identities=13% Similarity=0.132 Sum_probs=114.2
Q ss_pred EEEEEEcCCCCEEEEeecCCeEEEEEccCCee----eeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc
Q 023822 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATC----LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 112 (276)
Q Consensus 37 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~ 112 (276)
...+..++.+++||++..+....+++...... .... .-....+.+.|..+.....++...|....+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34456678888999888887777777654332 2222 222345566676677776666653335556666655543
Q ss_pred eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCCcEEEEeeCCeEEEEec
Q 023822 113 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLVFAVAFGGYIRMFDA 189 (276)
Q Consensus 113 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~ 189 (276)
...+.+|-..++.++|+||+++++++.+|..|++-.......+..+ |..-+..++.-++..++.++.|+++++||+
T Consensus 144 -~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 144 -CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDI 222 (390)
T ss_pred -cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEec
Confidence 3455689999999999999999999999999999888777666666 556677888888888888888999999999
Q ss_pred ccCCC
Q 023822 190 RKYEK 194 (276)
Q Consensus 190 ~~~~~ 194 (276)
++++.
T Consensus 223 ~sgk~ 227 (390)
T KOG3914|consen 223 TSGKL 227 (390)
T ss_pred ccCCc
Confidence 99875
No 280
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=5.2e-10 Score=89.22 Aligned_cols=222 Identities=10% Similarity=0.136 Sum_probs=151.0
Q ss_pred EEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCC--------CCCceEEEEcc
Q 023822 38 SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG--------WDESLRLLSLH 109 (276)
Q Consensus 38 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--------~d~~i~~~d~~ 109 (276)
+-+.|||-|.+|+|--..| |.+|--++...++.+. |. .|.-+.|||+.++|++-+..- -...+.|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 5689999999999998876 8899866666666654 33 589999999999999876421 13679999999
Q ss_pred CCceeeeecccC--cce-EEEEeccCCCEEEEeeCCCeEEEEeccCceeee--eEeecCCCeeEecCCCcEEEEee---C
Q 023822 110 DNKYLRYFKGHH--DRV-VSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG--LLRVQGRPAAAYDDQGLVFAVAF---G 181 (276)
Q Consensus 110 ~~~~~~~~~~~~--~~i-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~---d 181 (276)
+|...+.+.... ..+ .-..|+.|++++|--.. .+|.||+..+..++. .+...++....|+|.+.+||.=. +
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~ 369 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN 369 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence 998887776522 222 34679999999887766 579999987754432 33677888999999988887654 1
Q ss_pred ---CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec-------CC---cEEEEECCCCcEE-EEeecC
Q 023822 182 ---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-------EG---HIHVLDSFRGTLL-STYNVK 247 (276)
Q Consensus 182 ---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------dg---~i~i~d~~~~~~~-~~~~~~ 247 (276)
..+.+-.+.+.+. +....-+.-.=..+.|-.+|.+|+.--. .| .+.|+.++..... ....
T Consensus 370 ~~parvtL~evPs~~~----iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-- 443 (698)
T KOG2314|consen 370 NIPARVTLMEVPSKRE----IRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-- 443 (698)
T ss_pred CCcceEEEEecCccce----eeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee--
Confidence 3445555444332 2222222222234678888998876321 11 3556666554432 2333
Q ss_pred CCCCCceEEEEECCCCcEEEEecC
Q 023822 248 PVSRNSTLEASFSPEGMFVISGRV 271 (276)
Q Consensus 248 ~~~~~~v~~~~~s~~g~~l~~~~~ 271 (276)
....|...+|-|.|..+++-+.
T Consensus 444 --lke~vi~FaWEP~gdkF~vi~g 465 (698)
T KOG2314|consen 444 --LKESVIAFAWEPHGDKFAVISG 465 (698)
T ss_pred --cchheeeeeeccCCCeEEEEEc
Confidence 5678999999999987766543
No 281
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.31 E-value=2.8e-10 Score=85.57 Aligned_cols=166 Identities=16% Similarity=0.262 Sum_probs=113.5
Q ss_pred HhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCC
Q 023822 20 ILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW 99 (276)
Q Consensus 20 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 99 (276)
...++...+....|..+|..+-|+....++++.+.|..+.---.+.+..+..+... ....++.+.-. +...+..
T Consensus 100 dfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-~~~t~~~~d~~--~~fvGd~--- 173 (404)
T KOG1409|consen 100 DFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE-TPASALQFDAL--YAFVGDH--- 173 (404)
T ss_pred hhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee-ccCCCCceeeE--EEEeccc---
Confidence 34667777888899999999999998899999999977654444444443332211 11122222111 4444544
Q ss_pred CCceEEEEc--cCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCC-
Q 023822 100 DESLRLLSL--HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQG- 173 (276)
Q Consensus 100 d~~i~~~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~- 173 (276)
.|.|....+ ..-.++.++.+|.+.+.+++|.|....|.+|..|..+.+||+...+-+... +.+.+..+..-+--
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~ 253 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTR 253 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhe
Confidence 555555544 444667889999999999999999999999999999999999765443322 44555555555544
Q ss_pred cEEEEeeCCeEEEEeccc
Q 023822 174 LVFAVAFGGYIRMFDARK 191 (276)
Q Consensus 174 ~~l~~~~d~~i~~~d~~~ 191 (276)
++++++.||.|.+|++..
T Consensus 254 ~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 254 QLISCGEDGGIVVWNMNV 271 (404)
T ss_pred eeeeccCCCeEEEEeccc
Confidence 455555599999999865
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=6.6e-12 Score=100.05 Aligned_cols=172 Identities=15% Similarity=0.275 Sum_probs=128.2
Q ss_pred eeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC-------ceeeeecccCcceEEEEeccCCCEEEEeeC
Q 023822 69 LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN-------KYLRYFKGHHDRVVSLSLCSSKDCFISGSL 141 (276)
Q Consensus 69 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 141 (276)
+..+.+|...|..++--.+.+.+++++. |++|++|.++.. .+..++..|+.+|.++.|..+-++++++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASk---DKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-- 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASK---DKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-- 802 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccC---CceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--
Confidence 4456788888888888888889999998 999999998642 3667889999999999999988877765
Q ss_pred CCeEEEEeccCceeeeeE----eecCCCeeEecC--CCcEEEEe-e-CCeEEEEecccCCCC-CeeeeeecCCCCCceEE
Q 023822 142 DRTVLLWDQRAEKCQGLL----RVQGRPAAAYDD--QGLVFAVA-F-GGYIRMFDARKYEKG-PFDIFSVGGDISDANVV 212 (276)
Q Consensus 142 d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~--~~~~l~~~-~-d~~i~~~d~~~~~~~-~~~~~~~~~~~~~i~~~ 212 (276)
||-|++||.--++..... +......+..-+ +..++.++ + ..+++++|.+..+-. ...+-...+....+.++
T Consensus 803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 788999998777665544 112222222222 34444444 4 799999999985521 11122223445678899
Q ss_pred EECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822 213 KFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN 245 (276)
Q Consensus 213 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 245 (276)
+..|.|+.++++-..|+|.+.|.++|+.+..++
T Consensus 883 aVa~~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 883 AVADKGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred EeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 999999999999999999999999999887655
No 283
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.27 E-value=3.3e-08 Score=75.11 Aligned_cols=225 Identities=13% Similarity=0.162 Sum_probs=152.5
Q ss_pred EEEEEcC-CCCEEEEeecCC-eEEEEEccCCeeeeeeeeeeece--EEEEEeccCCeEEEeccC--CCCCceEEEEcc-C
Q 023822 38 SSMDFHK-SSSYLVTASDDE-SIRLYDVTAATCLKTINSKKYGV--DLVCFTSHPTTVIYSSKN--GWDESLRLLSLH-D 110 (276)
Q Consensus 38 ~~~~~~~-~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~~--~~d~~i~~~d~~-~ 110 (276)
..++.+| ....++.+-.-| ...+||..+++....+....+.- -.-.|++++++|++.-.+ ...|.|-|||.. +
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 4678888 556667776666 46789999999887775443321 246899999999886431 127899999998 5
Q ss_pred CceeeeecccCcceEEEEeccCCCEEEEee------------------CCCeEEEEeccCceeeeeE------eecCCCe
Q 023822 111 NKYLRYFKGHHDRVVSLSLCSSKDCFISGS------------------LDRTVLLWDQRAEKCQGLL------RVQGRPA 166 (276)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------------------~d~~i~iwd~~~~~~~~~~------~~~~~~~ 166 (276)
-+.+.++..|.-....+.+.||++.|+++- .+.++.+.|.++++.+... +...++.
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 566777877776677888999997776653 2335666677777766553 3335778
Q ss_pred eEecCCCcEEEEee-CC-------eEEEEecccCCCCCeeeeee-----cCCCCCceEEEECCCCcEEEEee-cCCcEEE
Q 023822 167 AAYDDQGLVFAVAF-GG-------YIRMFDARKYEKGPFDIFSV-----GGDISDANVVKFSNDGRLMLLTT-MEGHIHV 232 (276)
Q Consensus 167 ~~~~~~~~~l~~~~-d~-------~i~~~d~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i 232 (276)
+++.++|..+.+.. .+ -+.+++.... ...... ..-...+-+|++++++.++++.+ ..+.+.+
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~----~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA----LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc----ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 99999998877765 22 2333333221 111111 12335788999999998886666 5678999
Q ss_pred EECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822 233 LDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS 272 (276)
Q Consensus 233 ~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 272 (276)
||..+++.+..... ..+..++-.+++ ++++.+.-
T Consensus 244 ~d~~tg~~~~~~~l-----~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 244 WDAATGRLLGSVPL-----PDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred EECCCCCEeecccc-----CceeeeeecCCc-eEEeCCCc
Confidence 99999999887762 345667776766 66655543
No 284
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.26 E-value=4.2e-09 Score=85.36 Aligned_cols=213 Identities=12% Similarity=0.089 Sum_probs=126.7
Q ss_pred CCEEEEeecCCeEEEEEccCCeeeeeeeeeeece-----EEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeeccc
Q 023822 46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGV-----DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH 120 (276)
Q Consensus 46 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~ 120 (276)
+..++.++.++.+..||.++|+.+..+....... ..... .+..++.+.. ++.+..+|.++++.+......
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~---~g~v~ald~~tG~~~W~~~~~ 219 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFA---GGKLVALDLQTGQPLWEQRVA 219 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECC---CCEEEEEEccCCCEeeeeccc
Confidence 3455666677888888888877666554322111 01111 1245666665 889999999999876553311
Q ss_pred Cc----c---eEEEEecc--CCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEeeCCeEEEEeccc
Q 023822 121 HD----R---VVSLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191 (276)
Q Consensus 121 ~~----~---i~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~ 191 (276)
.. . ...+.-+| .+..++.++.+|.++.||.++++..-............ .++++++...+|.+..+|..+
T Consensus 220 ~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~-~~~~vyv~~~~G~l~~~d~~t 298 (377)
T TIGR03300 220 LPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAV-DDNRLYVTDADGVVVALDRRS 298 (377)
T ss_pred cCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceE-eCCEEEEECCCCeEEEEECCC
Confidence 00 0 00010111 34577888889999999999887665443222222222 245666666689999999987
Q ss_pred CCCCCeeeeeecCC-CCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceE-EEEECCCCcEEEEe
Q 023822 192 YEKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL-EASFSPEGMFVISG 269 (276)
Q Consensus 192 ~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~~~ 269 (276)
++. ....... .....+... .+..+++++.+|.|+++|..+|+.+..+.. +...+. +..+ .++ .|+.+
T Consensus 299 G~~----~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~---~~~~~~~sp~~-~~~-~l~v~ 367 (377)
T TIGR03300 299 GSE----LWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKT---DGSGIASPPVV-VGD-GLLVQ 367 (377)
T ss_pred CcE----EEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc---CCCccccCCEE-ECC-EEEEE
Confidence 653 2222111 111122222 356788999999999999999999988873 332322 2222 233 47788
Q ss_pred cCCCCC
Q 023822 270 RVSPFS 275 (276)
Q Consensus 270 ~~dg~v 275 (276)
+.||.+
T Consensus 368 ~~dG~l 373 (377)
T TIGR03300 368 TRDGDL 373 (377)
T ss_pred eCCceE
Confidence 888864
No 285
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.26 E-value=4.6e-09 Score=83.04 Aligned_cols=223 Identities=12% Similarity=0.097 Sum_probs=152.3
Q ss_pred CcEEEEEEcCCCCEEEEeecCC---------------eEEEEEccCCeeeeeeeeeeec--eE-EEEEeccCCeEEEecc
Q 023822 35 GRISSMDFHKSSSYLVTASDDE---------------SIRLYDVTAATCLKTINSKKYG--VD-LVCFTSHPTTVIYSSK 96 (276)
Q Consensus 35 ~~v~~~~~~~~~~~l~~~~~d~---------------~i~iwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~~~ 96 (276)
..|..+.|+|++++|.+-+..+ .+.+||..+|..+..+.....+ .+ -+.|+.+.++++-..
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv- 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV- 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-
Confidence 4588899999999999876433 4899999999999988766555 44 788998988877664
Q ss_pred CCCCCceEEEEccCCcee-eeecc-cCcceEEEEeccCCC--EEEE-----eeCCCeEEEEeccCceeeeeE--eecCCC
Q 023822 97 NGWDESLRLLSLHDNKYL-RYFKG-HHDRVVSLSLCSSKD--CFIS-----GSLDRTVLLWDQRAEKCQGLL--RVQGRP 165 (276)
Q Consensus 97 ~~~d~~i~~~d~~~~~~~-~~~~~-~~~~i~~~~~~~~~~--~l~~-----~~~d~~i~iwd~~~~~~~~~~--~~~~~~ 165 (276)
...++++++ +.... ..+.. ....|....|+|.++ .|+. ...++++++|.+.....+... ..-...
T Consensus 151 ---~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~ 226 (561)
T COG5354 151 ---GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV 226 (561)
T ss_pred ---cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc
Confidence 678999997 33221 11111 135678888998644 3443 345789999999877666554 333345
Q ss_pred eeEecCCCcEEEEee------------CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEe--ecCCcEE
Q 023822 166 AAAYDDQGLVFAVAF------------GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT--TMEGHIH 231 (276)
Q Consensus 166 ~~~~~~~~~~l~~~~------------d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~ 231 (276)
.+.|.+.|.++.+-. +.++++++++.... ... .....+|...+|.|.++.+++. -.+..+.
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i----~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s 301 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI----PVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVS 301 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc----cee-ccccccceeeeecccCCceeEEeccccccee
Confidence 788889887665422 35688888874332 111 1446789999999988776654 4678899
Q ss_pred EEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822 232 VLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP 273 (276)
Q Consensus 232 i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 273 (276)
++|++.. +...+ ....=+.+.|+|.+++++.++-|.
T Consensus 302 ~~~lr~N-l~~~~-----Pe~~rNT~~fsp~~r~il~agF~n 337 (561)
T COG5354 302 VFDLRGN-LRFYF-----PEQKRNTIFFSPHERYILFAGFDN 337 (561)
T ss_pred ecccccc-eEEec-----CCcccccccccCcccEEEEecCCc
Confidence 9998655 33322 234444567788887777766554
No 286
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=6.1e-11 Score=92.83 Aligned_cols=205 Identities=10% Similarity=0.134 Sum_probs=146.9
Q ss_pred ceeeccCCCcEEEEEEcCCC-CEEEEeecCCeEEEEEccCCeeeeeee---eeee---ceEEEEEeccCC-eEEEeccCC
Q 023822 27 GMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTIN---SKKY---GVDLVCFTSHPT-TVIYSSKNG 98 (276)
Q Consensus 27 ~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~---~v~~~~~~~~~~-~l~~~~~~~ 98 (276)
...+..|.++|.-++.-|+. .-|.+++.|+.+.-+|+..+.+...+. .+.. ....++..|.+. .+++++.
T Consensus 225 t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~-- 302 (559)
T KOG1334|consen 225 TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGS-- 302 (559)
T ss_pred ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCCh--
Confidence 55667899999999999954 568899999999999988765443332 2222 567888888766 6777777
Q ss_pred CCCceEEEEccCCc------eeeeec------ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce------------
Q 023822 99 WDESLRLLSLHDNK------YLRYFK------GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK------------ 154 (276)
Q Consensus 99 ~d~~i~~~d~~~~~------~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------------ 154 (276)
|..+++||.+.-. .+..+. ...-.|++++|+.++.-|+++-.|-.|+++.-..+.
T Consensus 303 -dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~ 381 (559)
T KOG1334|consen 303 -DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQ 381 (559)
T ss_pred -hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhh
Confidence 9999999976432 122222 223469999999877777777778889998533211
Q ss_pred eeee-Eeec----CCCee-EecCCCcEEEEeeC-CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC
Q 023822 155 CQGL-LRVQ----GRPAA-AYDDQGLVFAVAFG-GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME 227 (276)
Q Consensus 155 ~~~~-~~~~----~~~~~-~~~~~~~~l~~~~d-~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 227 (276)
..+. +..+ .+..+ .|-|...++++|+| |.|.+|+-.+.+. +..+.+...-|+|+.=+|--..||+++-|
T Consensus 382 ~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei----i~~MegDr~VVNCLEpHP~~PvLAsSGid 457 (559)
T KOG1334|consen 382 YVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI----IRFMEGDRHVVNCLEPHPHLPVLASSGID 457 (559)
T ss_pred ccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHH----HHHhhcccceEeccCCCCCCchhhccCCc
Confidence 1111 2111 13333 45688899999997 9999999888664 44455555689999999999999999999
Q ss_pred CcEEEEECCCC
Q 023822 228 GHIHVLDSFRG 238 (276)
Q Consensus 228 g~i~i~d~~~~ 238 (276)
..|+||-..+.
T Consensus 458 ~DVKIWTP~~~ 468 (559)
T KOG1334|consen 458 HDVKIWTPLTA 468 (559)
T ss_pred cceeeecCCcc
Confidence 99999986443
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.25 E-value=2.4e-08 Score=73.78 Aligned_cols=202 Identities=12% Similarity=0.146 Sum_probs=132.7
Q ss_pred EEEcCCCCEEEEeecCCeEEEEEccCC--eeeee---eeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822 40 MDFHKSSSYLVTASDDESIRLYDVTAA--TCLKT---INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL 114 (276)
Q Consensus 40 ~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~ 114 (276)
++.+.+|+.||.- .|..|.|-..++. ..+.. -+.....-..++|+||+..|+.+.. .|+|+++|+.... +
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S---~G~i~vfdl~g~~-l 77 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAES---TGTIRVFDLMGSE-L 77 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcC---CCeEEEEecccce-e
Confidence 5667889888765 6677877765532 12222 2233345778999999999999998 9999999987533 3
Q ss_pred eeecc-------cCcceEEEEeccCC------CEEEEeeCCCeEEEEeccC-----ceeeeeE-----eecCCCeeEecC
Q 023822 115 RYFKG-------HHDRVVSLSLCSSK------DCFISGSLDRTVLLWDQRA-----EKCQGLL-----RVQGRPAAAYDD 171 (276)
Q Consensus 115 ~~~~~-------~~~~i~~~~~~~~~------~~l~~~~~d~~i~iwd~~~-----~~~~~~~-----~~~~~~~~~~~~ 171 (276)
..+.. -...|..|.|.+.. ..|++-..+|.++-|-+.. .+....+ ...++..+.++|
T Consensus 78 f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p 157 (282)
T PF15492_consen 78 FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP 157 (282)
T ss_pred EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence 33322 22456777775422 2566777788887776532 2233333 345788999999
Q ss_pred CCcEEEEee--C-C---------eEEEEecccCCCC------------------------Ceeeeee-cCCCCCceEEEE
Q 023822 172 QGLVFAVAF--G-G---------YIRMFDARKYEKG------------------------PFDIFSV-GGDISDANVVKF 214 (276)
Q Consensus 172 ~~~~l~~~~--d-~---------~i~~~d~~~~~~~------------------------~~~~~~~-~~~~~~i~~~~~ 214 (276)
..++|.+++ . . -+..|.+-+...- ....+.. ......|..+..
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl 237 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL 237 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence 987776665 1 1 3556655332210 0001111 123456888999
Q ss_pred CCCCcEEEEeecCCcEEEEECCCCcEEEEeec
Q 023822 215 SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV 246 (276)
Q Consensus 215 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 246 (276)
||||+.||+...+|.|.+|++.+-++......
T Consensus 238 SPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 238 SPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 99999999999999999999999888887763
No 288
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.24 E-value=1.7e-09 Score=78.86 Aligned_cols=206 Identities=10% Similarity=-0.015 Sum_probs=131.9
Q ss_pred ecCCeEEEEEccCCe--eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee-eeecccCcceEEEEe
Q 023822 53 SDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL-RYFKGHHDRVVSLSL 129 (276)
Q Consensus 53 ~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~i~~~~~ 129 (276)
+....+.+|++.+.. .++.+++-. ..-..+.....+|+.++. .|...+|...+.+.. +....|...|.-+.=
T Consensus 49 ~~t~sv~i~~~y~N~~~iv~~y~g~~--F~p~s~~~kc~~la~gG~---~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 49 SKTISVPINSHYSNPKGIVEFYTGMT--FTPGSFINKCVTLADGGA---SGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred cceeeeEeccccCCchhhEEeeeccc--ccchHhhccccEEEeccc---cceeeeecccCcccceeeecccccchhhhhh
Confidence 344567788876543 222222211 111222234567888877 899999998866543 233334443322111
Q ss_pred cc-CCCEEEEeeCCCeEEEEeccCceeeeeEeecC--CCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCC
Q 023822 130 CS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGD 205 (276)
Q Consensus 130 ~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~ 205 (276)
.- ..-.+..++.|.++++.++..+......+... ...++++++++++++-. ...|..|.+......... ......
T Consensus 124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~~a~t 202 (344)
T KOG4532|consen 124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IYEAPT 202 (344)
T ss_pred hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee-eEeccc
Confidence 11 12246677888889988887666555554443 67899999999998877 488999998764432222 122333
Q ss_pred CCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee--cCCCCCCceEEEEECCCCc
Q 023822 206 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN--VKPVSRNSTLEASFSPEGM 264 (276)
Q Consensus 206 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~v~~~~~s~~g~ 264 (276)
...--+..|+.....+|++..||++.|||++......... ..+.|.+.+..+.|++.|.
T Consensus 203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 3345678899999999999999999999998765544332 2235889999999998663
No 289
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.20 E-value=2.4e-10 Score=94.11 Aligned_cols=222 Identities=18% Similarity=0.260 Sum_probs=154.9
Q ss_pred CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC-eeeeeee-eeeeceEEEEEeccC--CeEEEeccCCCCCceEEEEcc
Q 023822 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAA-TCLKTIN-SKKYGVDLVCFTSHP--TTVIYSSKNGWDESLRLLSLH 109 (276)
Q Consensus 34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~-~~~~~v~~~~~~~~~--~~l~~~~~~~~d~~i~~~d~~ 109 (276)
.+++.++..+|.|+-+|.++.-| +.+-|+... .+.+.+. ...-.|-...|+|.. .+-++... ...-.+|++.
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts---~qkaiiwnlA 99 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS---NQKAIIWNLA 99 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecC---cchhhhhhhh
Confidence 56788899999999999998877 666777643 2222221 112346677888754 34444444 6667788875
Q ss_pred CC---ceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceee-eeE--eecCCCeeEecC-CCcEEEEeeC
Q 023822 110 DN---KYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQ-GLL--RVQGRPAAAYDD-QGLVFAVAFG 181 (276)
Q Consensus 110 ~~---~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~-~~~--~~~~~~~~~~~~-~~~~l~~~~d 181 (276)
.. .....+-+|...|+.+.|+|+.. .+++++.|-.+..||+++.... ..+ -......+.|+- ++..++.+..
T Consensus 100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg 179 (1081)
T KOG0309|consen 100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHG 179 (1081)
T ss_pred cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccC
Confidence 33 33445678999999999999765 8999999999999999987533 222 344567888886 4567777778
Q ss_pred CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC-CcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEEC
Q 023822 182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS 260 (276)
Q Consensus 182 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s 260 (276)
+.|++||.+.+..+ ...+.+|...++.+.|..- ...+.+.+.|++|++||............ ....+|..-++.
T Consensus 180 ~~i~vwd~r~gs~p---l~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v--tt~~piw~~r~~ 254 (1081)
T KOG0309|consen 180 NDIFVWDLRKGSTP---LCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV--TTNFPIWRGRYL 254 (1081)
T ss_pred CceEEEeccCCCcc---eEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec--cccCcceecccc
Confidence 99999999986643 5556668888888888753 34578899999999999765433222211 245667777777
Q ss_pred CCCc
Q 023822 261 PEGM 264 (276)
Q Consensus 261 ~~g~ 264 (276)
|-|+
T Consensus 255 Pfg~ 258 (1081)
T KOG0309|consen 255 PFGE 258 (1081)
T ss_pred ccCc
Confidence 7554
No 290
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.19 E-value=2e-08 Score=76.09 Aligned_cols=186 Identities=19% Similarity=0.157 Sum_probs=121.5
Q ss_pred CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeee-cccC--
Q 023822 45 SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF-KGHH-- 121 (276)
Q Consensus 45 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~-~~~~-- 121 (276)
++..+++++.++.+..||..+|+.+..+.... ++.... ...+..++++.. ++.+..+|..+++.+... ....
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~-~~~~~~v~v~~~---~~~l~~~d~~tG~~~W~~~~~~~~~ 109 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAP-VVDGGRVYVGTS---DGSLYALDAKTGKVLWSIYLTSSPP 109 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGE-EEETTEEEEEET---TSEEEEEETTTSCEEEEEEE-SSCT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-ccccee-eecccccccccc---eeeeEecccCCcceeeeeccccccc
Confidence 45677777899999999999999887776522 222222 235556666665 889999999999998874 3221
Q ss_pred -cceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCC------------eeEecCCCcEEEEeeCCeEEEEe
Q 023822 122 -DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP------------AAAYDDQGLVFAVAFGGYIRMFD 188 (276)
Q Consensus 122 -~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~~d~~i~~~d 188 (276)
.....+.....++.++.+..++.|..+|+++++.+-........ .-....++.++++..++.+..+|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d 189 (238)
T PF13360_consen 110 AGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVD 189 (238)
T ss_dssp CSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEE
T ss_pred cccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEE
Confidence 11122233334778888888999999999999987776442211 12222345666666677544449
Q ss_pred cccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEE
Q 023822 189 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS 242 (276)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 242 (276)
.++++. ..... ...+..+ ..+.+..|+.++.++.|..||+++|+.+-
T Consensus 190 ~~tg~~----~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 190 LATGEK----LWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp TTTTEE----EEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred CCCCCE----EEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 888663 22222 1222221 34567778888799999999999998764
No 291
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.18 E-value=2.1e-08 Score=81.27 Aligned_cols=211 Identities=15% Similarity=0.152 Sum_probs=125.4
Q ss_pred CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcce
Q 023822 45 SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV 124 (276)
Q Consensus 45 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i 124 (276)
++..++.++.++.+..+|..+|+.+....... .+.+.... .+..++.+.. ++.|..||.++++.+..+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v-~~~~v~v~~~---~g~l~a~d~~tG~~~W~~~~~~~~~ 178 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV-ANGLVVVRTN---DGRLTALDAATGERLWTYSRVTPAL 178 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE-ECCEEEEECC---CCeEEEEEcCCCceeeEEccCCCce
Confidence 34567777788888888888888766554322 12111111 2456666665 8999999999998877765432211
Q ss_pred E-----EEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecC------------C-CeeEecCCCcEEEEeeCCeEEE
Q 023822 125 V-----SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG------------R-PAAAYDDQGLVFAVAFGGYIRM 186 (276)
Q Consensus 125 ~-----~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------~-~~~~~~~~~~~l~~~~d~~i~~ 186 (276)
. +... .+..++.+..++.+..+|.++++.+-...... + ....+ .++.+++.+.++.++.
T Consensus 179 ~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a 255 (377)
T TIGR03300 179 TLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAA 255 (377)
T ss_pred eecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEE
Confidence 1 1111 12467788888999999999887654332110 0 01111 2456666666999999
Q ss_pred EecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEE
Q 023822 187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV 266 (276)
Q Consensus 187 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 266 (276)
||.++++. ...... ....... ..+..+++++.+|.+..+|..+|+.+-..... ......+... .+..|
T Consensus 256 ~d~~tG~~----~W~~~~--~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~--~~~~~ssp~i--~g~~l 323 (377)
T TIGR03300 256 LDLRSGRV----LWKRDA--SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDEL--KYRQLTAPAV--VGGYL 323 (377)
T ss_pred EECCCCcE----EEeecc--CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccc--cCCccccCEE--ECCEE
Confidence 99988653 232221 1111222 24567888889999999999999887655311 1111111112 34567
Q ss_pred EEecCCCCC
Q 023822 267 ISGRVSPFS 275 (276)
Q Consensus 267 ~~~~~dg~v 275 (276)
++++.+|.+
T Consensus 324 ~~~~~~G~l 332 (377)
T TIGR03300 324 VVGDFEGYL 332 (377)
T ss_pred EEEeCCCEE
Confidence 777777653
No 292
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.17 E-value=1.3e-10 Score=61.10 Aligned_cols=38 Identities=26% Similarity=0.535 Sum_probs=36.0
Q ss_pred ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEE
Q 023822 25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYD 62 (276)
Q Consensus 25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 62 (276)
++..++++|.++|++++|+|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
No 293
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.17 E-value=2e-10 Score=102.68 Aligned_cols=179 Identities=13% Similarity=0.148 Sum_probs=132.5
Q ss_pred eeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeec-ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc
Q 023822 75 KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE 153 (276)
Q Consensus 75 ~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 153 (276)
+-..|.++.-+|...+.++++. ||.+++|....++.+..++ ..+..|+.+.|+.+|+.+..+..||.+.+|... .
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~---dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQ---DGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred ccCceeeecCCCCCceEEecCC---CceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence 3346888888899999999998 9999999998888776664 234789999999999999999999999999987 3
Q ss_pred eeeeeE--eecCCCeeEecCCCcEEEEee---CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC
Q 023822 154 KCQGLL--RVQGRPAAAYDDQGLVFAVAF---GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG 228 (276)
Q Consensus 154 ~~~~~~--~~~~~~~~~~~~~~~~l~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 228 (276)
++.... +......+.|-.. .++..+. ++.+.+||....... ......|...++++++-|..+.|++|+.+|
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~s-~~~tag~s~d~~n~~lwDtl~~~~~---s~v~~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIGS-LLATAGRSSDNRNVCLWDTLLPPMN---SLVHTCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred cceeccccCCccccceeeeeh-hhhccccCCCCCcccchhcccCccc---ceeeeecCCCceEEEEcCcceEEEecCCcC
Confidence 333333 3333444555442 2222222 589999998654322 222267889999999999999999999999
Q ss_pred cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCC
Q 023822 229 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPF 274 (276)
Q Consensus 229 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 274 (276)
.|++||++..++++.++ . +. ...++++|+..|+
T Consensus 2359 ~v~l~D~rqrql~h~~~---~---------~~-~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQ---A---------LD-TREYFVTGSSEGN 2391 (2439)
T ss_pred cEEEeehHHHHHHHHhh---h---------hh-hhheeeccCcccc
Confidence 99999999888877776 1 22 3445666665554
No 294
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=3.6e-10 Score=85.08 Aligned_cols=159 Identities=13% Similarity=0.192 Sum_probs=114.4
Q ss_pred CCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc-----eeeeeE-eecCCCeeEecC-C
Q 023822 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE-----KCQGLL-RVQGRPAAAYDD-Q 172 (276)
Q Consensus 100 d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~-~~~~~~~~~~~~-~ 172 (276)
+..+.+-|++++-. +.+. ..+.|.++.|+..++++..|+++|.|..+|+|.. .+...+ |...+.++..-. +
T Consensus 233 sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s 310 (425)
T KOG2695|consen 233 SQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFS 310 (425)
T ss_pred cceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccc
Confidence 78888999888743 2333 6778999999998999999999999999999965 233333 777777776655 4
Q ss_pred CcEEE-EeeCCeEEEEecccCCCCCeeeeeecCCCCCc--eEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCC-
Q 023822 173 GLVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDA--NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP- 248 (276)
Q Consensus 173 ~~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~- 248 (276)
+..|. .+.+|.|.+||.+.-+... .+...++|...- .-+...+....+++++.|...|||.++.|.++.++....
T Consensus 311 ~q~LmaS~M~gkikLyD~R~~K~~~-~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s 389 (425)
T KOG2695|consen 311 QQKLMASDMTGKIKLYDLRATKCKK-SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYS 389 (425)
T ss_pred cceEeeccCcCceeEeeehhhhccc-ceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCc
Confidence 55554 4459999999999765432 344555664332 223455667788899999999999999999999886422
Q ss_pred CCCCceEEEEECC
Q 023822 249 VSRNSTLEASFSP 261 (276)
Q Consensus 249 ~~~~~v~~~~~s~ 261 (276)
..+..+.+++|..
T Consensus 390 ~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 390 ASEVDIPSVAFDS 402 (425)
T ss_pred cccccccceehhc
Confidence 2233566777753
No 295
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.14 E-value=7.4e-08 Score=85.48 Aligned_cols=237 Identities=13% Similarity=0.181 Sum_probs=150.5
Q ss_pred CCCcEEEEEEcCCCCEEEEeec------CCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822 33 YNGRISSMDFHKSSSYLVTASD------DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 106 (276)
Q Consensus 33 h~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~ 106 (276)
+...-..++|-.||.++|+.+- -+.++||+-+ |....+-+.-.+--..++|.|.|+.+++.........|.+|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence 4455668999999999998874 2589999965 66555444444445678999999999988764435667777
Q ss_pred EccCCc---eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee--eEe---ecCCCeeEecCCC--cEE
Q 023822 107 SLHDNK---YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG--LLR---VQGRPAAAYDDQG--LVF 176 (276)
Q Consensus 107 d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~---~~~~~~~~~~~~~--~~l 176 (276)
.-+.-+ ....+......|..+.|++++..||....|. |.+|-..+..-.. .+. ......+.|+|.. ++.
T Consensus 287 ErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~ 365 (928)
T PF04762_consen 287 ERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLH 365 (928)
T ss_pred ecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEE
Confidence 743322 1112224566899999999999999977665 9999988765322 222 2234458898854 333
Q ss_pred EEeeCCeEEEEecc----cCC----------------------------CCCeeeeeecCCCCCceEEEECCCCcEEEEe
Q 023822 177 AVAFGGYIRMFDAR----KYE----------------------------KGPFDIFSVGGDISDANVVKFSNDGRLMLLT 224 (276)
Q Consensus 177 ~~~~d~~i~~~d~~----~~~----------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 224 (276)
+...++.+..++.. ... .+|...+.+ .-..+|.+++|++++..+++-
T Consensus 366 v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~~~~~avl 444 (928)
T PF04762_consen 366 VLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAFSPSNSRFAVL 444 (928)
T ss_pred EEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE-cCCCCcEEEEEeCCCCeEEEE
Confidence 43334655554432 110 011111121 134689999999999889999
Q ss_pred ecCCcEEEEECCCCcEE--------EEeec-------CCCCCCceEEEEECCCCcEEEEecCC
Q 023822 225 TMEGHIHVLDSFRGTLL--------STYNV-------KPVSRNSTLEASFSPEGMFVISGRVS 272 (276)
Q Consensus 225 ~~dg~i~i~d~~~~~~~--------~~~~~-------~~~~~~~v~~~~~s~~g~~l~~~~~d 272 (276)
..||.|.+|........ ..+.. .......+..++|..+...++....+
T Consensus 445 ~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (928)
T PF04762_consen 445 TSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSD 507 (928)
T ss_pred ECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecC
Confidence 99999999985432211 11110 01134567888888887766665543
No 296
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.13 E-value=4.3e-10 Score=92.62 Aligned_cols=209 Identities=14% Similarity=0.147 Sum_probs=142.8
Q ss_pred cceeeccCCCcEEEEEEcCC-CCEEEEeecCCeEEEEEccCCe-eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822 26 VGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAAT-CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (276)
Q Consensus 26 ~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i 103 (276)
....+.+|...|+.+-|+|. ...|++++.|-.+..||+.+.. ++..+..-......+.|+-....+++.+. ...|
T Consensus 106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlassh---g~~i 182 (1081)
T KOG0309|consen 106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSH---GNDI 182 (1081)
T ss_pred eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhcc---CCce
Confidence 34567899999999999984 4588999999999999998653 44445444556788999987777777776 7889
Q ss_pred EEEEccCC-ceeeeecccCcceEEEEeccC-CCEEEEeeCCCeEEEEeccCceee--eeE-eecCCCeeEecCCCc--EE
Q 023822 104 RLLSLHDN-KYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQ--GLL-RVQGRPAAAYDDQGL--VF 176 (276)
Q Consensus 104 ~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~--~~~-~~~~~~~~~~~~~~~--~l 176 (276)
.+||.+.+ .++..+++|...|+.++|+.- ...+.+++.|++|+.||....... +.. ...++..-.+-|-|. ++
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~ 262 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI 262 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEe
Confidence 99999876 567788999999999999753 336889999999999998754322 121 222233333333221 11
Q ss_pred EEee-CCeEEEEecccCC------CCCeeeeeecCCCCCceEEEECCCC----------cEEEEeecCCcEEEEECCC
Q 023822 177 AVAF-GGYIRMFDARKYE------KGPFDIFSVGGDISDANVVKFSNDG----------RLMLLTTMEGHIHVLDSFR 237 (276)
Q Consensus 177 ~~~~-d~~i~~~d~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~----------~~l~~~~~dg~i~i~d~~~ 237 (276)
.-.. +..+.+++.++.. ..+..++.+.+|...|....|-..+ -.|++-+.|..+++|-+.+
T Consensus 263 mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 263 MPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 1111 2233333332211 1233477788888887776665432 2589999999999998753
No 297
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.12 E-value=9.5e-08 Score=70.69 Aligned_cols=190 Identities=12% Similarity=0.162 Sum_probs=119.4
Q ss_pred EEEeccCCeEEEeccCCCCCceEEEEccCC--ceee---eecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceee
Q 023822 82 VCFTSHPTTVIYSSKNGWDESLRLLSLHDN--KYLR---YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156 (276)
Q Consensus 82 ~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~--~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 156 (276)
++.+.+|+.|++.. |..|.+=..+.. ..+. ..+.....-+.++|+||+.+||.+...|+|++||+......
T Consensus 3 ~~~~~~Gk~lAi~q----d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf 78 (282)
T PF15492_consen 3 LALSSDGKLLAILQ----DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF 78 (282)
T ss_pred eeecCCCcEEEEEe----ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE
Confidence 55667888887776 666666554432 1111 22223344578999999999999999999999998764332
Q ss_pred eeEe---------ecCCCeeEecC-------CCcEEEEeeCCeEEEEecccCCC---CCeeeeeecC-CCCCceEEEECC
Q 023822 157 GLLR---------VQGRPAAAYDD-------QGLVFAVAFGGYIRMFDARKYEK---GPFDIFSVGG-DISDANVVKFSN 216 (276)
Q Consensus 157 ~~~~---------~~~~~~~~~~~-------~~~~l~~~~d~~i~~~d~~~~~~---~~~~~~~~~~-~~~~i~~~~~~~ 216 (276)
.+. ...+..+.|.+ ...+++...+|.++-|-+..+.. .....+.+.. ....|.++.++|
T Consensus 79 -~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p 157 (282)
T PF15492_consen 79 -VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP 157 (282)
T ss_pred -EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence 221 11233444433 22678888888888887643221 1222333333 467899999999
Q ss_pred CCcEEEEeec----CC-------cEEEEECCCCcEEEE--------------------------eecCCCCCCceEEEEE
Q 023822 217 DGRLMLLTTM----EG-------HIHVLDSFRGTLLST--------------------------YNVKPVSRNSTLEASF 259 (276)
Q Consensus 217 ~~~~l~~~~~----dg-------~i~i~d~~~~~~~~~--------------------------~~~~~~~~~~v~~~~~ 259 (276)
..++|++|+. ++ -+.-|.+-++.+-.. +.........|..+..
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl 237 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL 237 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence 9888888763 11 256666543321111 0000123567999999
Q ss_pred CCCCcEEEEecCCCCCC
Q 023822 260 SPEGMFVISGRVSPFSS 276 (276)
Q Consensus 260 s~~g~~l~~~~~dg~vs 276 (276)
||||+.||+...+|.+|
T Consensus 238 SPdg~~La~ih~sG~ls 254 (282)
T PF15492_consen 238 SPDGSLLACIHFSGSLS 254 (282)
T ss_pred CCCCCEEEEEEcCCeEE
Confidence 99999999999998764
No 298
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.10 E-value=2.5e-09 Score=82.03 Aligned_cols=160 Identities=14% Similarity=0.154 Sum_probs=108.3
Q ss_pred ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCce----eeeecccCcceEEEEeccCCCEEEEeeCC---CeEEEEec
Q 023822 78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY----LRYFKGHHDRVVSLSLCSSKDCFISGSLD---RTVLLWDQ 150 (276)
Q Consensus 78 ~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~ 150 (276)
....+..++.++.++++.. +....+++...... .... .-...-+++.|..+......+..- ..+.+|..
T Consensus 64 a~~~~~~s~~~~llAv~~~---~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATS---SKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred cccccccCCCceEEEEEeC---CCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 3445666778888888876 77766777654432 1111 122333455555555544444444 44555555
Q ss_pred cCceeeeeE-eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC
Q 023822 151 RAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG 228 (276)
Q Consensus 151 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 228 (276)
..+.+...+ |...+..++++||++++.++. |..|++-....... +..+ .-+|..-|..++.-++ ..|+++|.|+
T Consensus 140 ~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~--Iesf-clGH~eFVS~isl~~~-~~LlS~sGD~ 215 (390)
T KOG3914|consen 140 DSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV--IESF-CLGHKEFVSTISLTDN-YLLLSGSGDK 215 (390)
T ss_pred cccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc--hhhh-ccccHhheeeeeeccC-ceeeecCCCC
Confidence 555555555 777788999999999999988 99999987654221 1111 2468888999998876 4589999999
Q ss_pred cEEEEECCCCcEEEEee
Q 023822 229 HIHVLDSFRGTLLSTYN 245 (276)
Q Consensus 229 ~i~i~d~~~~~~~~~~~ 245 (276)
+|++||+.+|+.+.++.
T Consensus 216 tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 216 TLRLWDITSGKLLDTCD 232 (390)
T ss_pred cEEEEecccCCcccccc
Confidence 99999999999987765
No 299
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.4e-09 Score=83.42 Aligned_cols=235 Identities=14% Similarity=0.156 Sum_probs=161.4
Q ss_pred cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC--C-eeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEc
Q 023822 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA--A-TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 108 (276)
Q Consensus 32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~ 108 (276)
-|...|+.+.... .+++.+++.||.++.|.-.. + +.+..+..|-..+.+++.+-++..+.+.... |..++++|+
T Consensus 7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~--Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDP--DHSVKVFDV 83 (558)
T ss_pred cccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCc--ccceeEEEe
Confidence 3777787776654 47999999999999998543 1 3344556788889999999999888886542 899999999
Q ss_pred cCCceeeeec--ccCcceEEEEeccCCC---EEE-EeeCCCeEEEEeccCceeee----eEeecCCCeeEecCCCcEEEE
Q 023822 109 HDNKYLRYFK--GHHDRVVSLSLCSSKD---CFI-SGSLDRTVLLWDQRAEKCQG----LLRVQGRPAAAYDDQGLVFAV 178 (276)
Q Consensus 109 ~~~~~~~~~~--~~~~~i~~~~~~~~~~---~l~-~~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~ 178 (276)
.+-..+.-++ ..++.+.. +...|. .++ +.-.++.+.++|-+...+.. .++..++.++.+.+.+..+++
T Consensus 84 En~DminmiKL~~lPg~a~w--v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS 161 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAEW--VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS 161 (558)
T ss_pred eccchhhhcccccCCCceEE--ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee
Confidence 8765443222 22222221 122231 333 33457899999977655332 237788889999999988887
Q ss_pred ee-CCeEEEEeccc-CCCC----------CeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeec
Q 023822 179 AF-GGYIRMFDARK-YEKG----------PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV 246 (276)
Q Consensus 179 ~~-d~~i~~~d~~~-~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 246 (276)
.. .|.|.-|.... .+.+ ...++.+........++.|+|+|..+.+-+.|..|++++.++|++++.+..
T Consensus 162 iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 162 IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence 77 79999998873 1111 111233334456788999999999999999999999999999988776542
Q ss_pred CC-----------------------------CC-CCceEEEEECCCCcEEEEecC
Q 023822 247 KP-----------------------------VS-RNSTLEASFSPEGMFVISGRV 271 (276)
Q Consensus 247 ~~-----------------------------~~-~~~v~~~~~s~~g~~l~~~~~ 271 (276)
.. .+ ...-+.+.|...|++|+.|+-
T Consensus 242 ~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~ 296 (558)
T KOG0882|consen 242 VLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTI 296 (558)
T ss_pred cchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecc
Confidence 11 01 122355778888888887753
No 300
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.09 E-value=1.4e-07 Score=71.83 Aligned_cols=188 Identities=20% Similarity=0.215 Sum_probs=129.9
Q ss_pred ceeeccCCCcEEEEEEcCCCCEEEEee-----cCCeEEEEEcc-CCeeeeeeeeeeeceEEEEEeccCCeEEEeccC---
Q 023822 27 GMSFRDYNGRISSMDFHKSSSYLVTAS-----DDESIRLYDVT-AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN--- 97 (276)
Q Consensus 27 ~~~~~~h~~~v~~~~~~~~~~~l~~~~-----~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--- 97 (276)
-+.|.|| -.|++||++|++.- ..|.|-|||.. +.+.+.++..+.-....+.+.|+++.|+++..+
T Consensus 49 gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~T 122 (305)
T PF07433_consen 49 GRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIET 122 (305)
T ss_pred CCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCcc
Confidence 3445566 68999999999864 35789999998 667888888887778889999999999887542
Q ss_pred ------------CCCCceEEEEccCCceeee--e--cccCcceEEEEeccCCCEEEEeeCCCe-------EEEEeccCce
Q 023822 98 ------------GWDESLRLLSLHDNKYLRY--F--KGHHDRVVSLSLCSSKDCFISGSLDRT-------VLLWDQRAEK 154 (276)
Q Consensus 98 ------------~~d~~i~~~d~~~~~~~~~--~--~~~~~~i~~~~~~~~~~~l~~~~~d~~-------i~iwd~~~~~ 154 (276)
..+..+.+.|..+++.+.. + ..|...|..+++.++|..++..-..|. |.+++...
T Consensus 123 hpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-- 200 (305)
T PF07433_consen 123 HPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-- 200 (305)
T ss_pred CcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--
Confidence 1245677778888887766 4 337788999999999876665554432 33443322
Q ss_pred eeeeEe---------ecCCCeeEecCCCcEEEEee--CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEE
Q 023822 155 CQGLLR---------VQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLL 223 (276)
Q Consensus 155 ~~~~~~---------~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 223 (276)
....+. .+.+-++++++++.++++++ .+.+.+||..+++. +.. ..-..+..++-.+++ ++++
T Consensus 201 ~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~----~~~--~~l~D~cGva~~~~~-f~~s 273 (305)
T PF07433_consen 201 ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL----LGS--VPLPDACGVAPTDDG-FLVS 273 (305)
T ss_pred cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE----eec--cccCceeeeeecCCc-eEEe
Confidence 222221 12345899999999888888 79999999988663 111 122356667777766 4554
Q ss_pred eecCCcE
Q 023822 224 TTMEGHI 230 (276)
Q Consensus 224 ~~~dg~i 230 (276)
.+ .|.+
T Consensus 274 sG-~G~~ 279 (305)
T PF07433_consen 274 SG-QGQL 279 (305)
T ss_pred CC-CccE
Confidence 43 4443
No 301
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.05 E-value=8.4e-10 Score=57.92 Aligned_cols=38 Identities=34% Similarity=0.660 Sum_probs=36.1
Q ss_pred ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEe
Q 023822 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149 (276)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 149 (276)
+++.++.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
No 302
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=5.6e-08 Score=80.98 Aligned_cols=232 Identities=13% Similarity=0.150 Sum_probs=160.0
Q ss_pred cEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCC------------eEEEeccCCCCCce
Q 023822 36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT------------TVIYSSKNGWDESL 103 (276)
Q Consensus 36 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~------------~l~~~~~~~~d~~i 103 (276)
.-.++.|+|.| ++|.|+. ..|.+-|..+-+.++.+..|...|+.+.|.|-.. .++++.. .|.|
T Consensus 17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~---~GrI 91 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADI---SGRI 91 (1062)
T ss_pred cccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccc---cCcE
Confidence 35678999876 7777765 4788999999999999999999999999986421 3444444 8999
Q ss_pred EEEEccCCceeeeecccCcceEEEEecc---CC-CEEEEeeCCCeEEEEeccCceeeeeEee--cCCCeeEecCC-C-cE
Q 023822 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCS---SK-DCFISGSLDRTVLLWDQRAEKCQGLLRV--QGRPAAAYDDQ-G-LV 175 (276)
Q Consensus 104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~---~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~-~-~~ 175 (276)
.+||...+..+..+..|.+++..++|-+ +. ..|++-....++.+|+..+++..-.... ....++.++|- . ++
T Consensus 92 il~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~ 171 (1062)
T KOG1912|consen 92 ILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHF 171 (1062)
T ss_pred EEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceE
Confidence 9999999988888999999999999976 33 3666667778999999999887655522 22335677763 2 34
Q ss_pred EEEeeCCeEEEEecccCCCC--CeeeeeecC-C----------------CCC---------ceEEEECCCCcEEEEeecC
Q 023822 176 FAVAFGGYIRMFDARKYEKG--PFDIFSVGG-D----------------ISD---------ANVVKFSNDGRLMLLTTME 227 (276)
Q Consensus 176 l~~~~d~~i~~~d~~~~~~~--~~~~~~~~~-~----------------~~~---------i~~~~~~~~~~~l~~~~~d 227 (276)
.+.+..|.+.+-+.-....+ +.+.+.+.. | ... ...++|+|.-+-++.....
T Consensus 172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p 251 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP 251 (1062)
T ss_pred EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec
Confidence 44444677666664332211 111111111 0 000 1135778876666666677
Q ss_pred CcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCC--cEEEEecCCCCC
Q 023822 228 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG--MFVISGRVSPFS 275 (276)
Q Consensus 228 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~dg~v 275 (276)
..+.++|++-..++..... ..+.+.-+.|-|++ ..|+..-.||-.
T Consensus 252 rellv~dle~~~~l~vvpi---er~~akfv~vlP~~~rd~LfclH~nG~l 298 (1062)
T KOG1912|consen 252 RELLVFDLEYECCLAVVPI---ERGGAKFVDVLPDPRRDALFCLHSNGRL 298 (1062)
T ss_pred cceEEEcchhhceeEEEEe---ccCCcceeEeccCCCcceEEEEecCCeE
Confidence 8899999998888888874 34555556777766 468888888753
No 303
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=3.1e-08 Score=82.44 Aligned_cols=209 Identities=12% Similarity=0.118 Sum_probs=148.1
Q ss_pred hccccceeeccCCCcEEEEEEcCCC------------CEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEecc--
Q 023822 22 QSMEVGMSFRDYNGRISSMDFHKSS------------SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH-- 87 (276)
Q Consensus 22 ~~~~~~~~~~~h~~~v~~~~~~~~~------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-- 87 (276)
.+++.++.+..|+..|+.+.|.|.. -+||++...|.|.+||...+..+..+..+..++..++|-+.
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence 3567778888999999999998731 15677788899999999999888899999999999999863
Q ss_pred -C-CeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEecc-CCCEEEEeeCCCeEEEEeccCc-------eeee
Q 023822 88 -P-TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAE-------KCQG 157 (276)
Q Consensus 88 -~-~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-------~~~~ 157 (276)
. ..++.... ...+.+|+..+|+....+........|+.+.| |.+.+...+..|.+.+-+.-.. +..+
T Consensus 123 ~Srd~LlaIh~---ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q 199 (1062)
T KOG1912|consen 123 DSRDVLLAIHG---SSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ 199 (1062)
T ss_pred cchheeEEecC---CcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEE
Confidence 3 23444443 78999999999999888877677778899988 5566777777777777654311 1111
Q ss_pred eE--eec----------------CC---------CeeEecCCC-cEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCc
Q 023822 158 LL--RVQ----------------GR---------PAAAYDDQG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDA 209 (276)
Q Consensus 158 ~~--~~~----------------~~---------~~~~~~~~~-~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i 209 (276)
.. +.. .. ..++|+|.- +++.......+.++|++-... .....-..+.+
T Consensus 200 I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~----l~vvpier~~a 275 (1062)
T KOG1912|consen 200 ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECC----LAVVPIERGGA 275 (1062)
T ss_pred EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhce----eEEEEeccCCc
Confidence 11 000 00 034667765 455666689999999986443 33333334455
Q ss_pred eEEEECCCC--cEEEEeecCCcEEEEECCC
Q 023822 210 NVVKFSNDG--RLMLLTTMEGHIHVLDSFR 237 (276)
Q Consensus 210 ~~~~~~~~~--~~l~~~~~dg~i~i~d~~~ 237 (276)
.-+.+-|++ ..|++...||.+.+|-.+.
T Consensus 276 kfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 276 KFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 567777765 5688999999999997554
No 304
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.02 E-value=4.5e-07 Score=68.66 Aligned_cols=204 Identities=14% Similarity=0.094 Sum_probs=122.2
Q ss_pred CCeEEEEEccCCeeeeeeeeeeeceEEEE--EeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccC
Q 023822 55 DESIRLYDVTAATCLKTINSKKYGVDLVC--FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS 132 (276)
Q Consensus 55 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~ 132 (276)
+|+|..||..+|+.+....... ...... ..+++..++++.. ++.|..||..+++.+..... ...+.... ...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~---~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASG---DGNLYALDAKTGKVLWRFDL-PGPISGAP-VVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEET---TSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEE
T ss_pred CCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcC---CCEEEEEECCCCCEEEEeec-ccccccee-eec
Confidence 6899999999999888775421 122222 3446777777766 99999999999998877764 22222111 224
Q ss_pred CCEEEEeeCCCeEEEEeccCceeeeeE-eec-C-C---CeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCC
Q 023822 133 KDCFISGSLDRTVLLWDQRAEKCQGLL-RVQ-G-R---PAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGD 205 (276)
Q Consensus 133 ~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~-~-~---~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~ 205 (276)
+..++.++.++.++.+|.++++..-.. ... + . ........+..++++. ++.|..+|+++++. +......
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~----~w~~~~~ 151 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL----LWKYPVG 151 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE----EEEEESS
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcE----EEEeecC
Confidence 556677778889999999999888774 222 1 1 1122222354444444 89999999998764 3322222
Q ss_pred CCC----------ceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 206 ISD----------ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 206 ~~~----------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
... +..-....++ .++.++.++.+.-+|+.+++.+-... ...+..+ ..+++..|+.++.++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-----~~~~~~~-~~~~~~~l~~~~~~~~l 224 (238)
T PF13360_consen 152 EPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-----ISGIYSL-PSVDGGTLYVTSSDGRL 224 (238)
T ss_dssp TT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-----SS-ECEC-EECCCTEEEEEETTTEE
T ss_pred CCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-----CCCccCC-ceeeCCEEEEEeCCCEE
Confidence 111 1122222345 67777777754444999999764222 1222221 34666677766666543
No 305
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.01 E-value=1.3e-08 Score=73.99 Aligned_cols=166 Identities=16% Similarity=0.157 Sum_probs=102.2
Q ss_pred cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCee-eeeeeeeeeceEEEEEeccCCeEEEeccCCC--CCc
Q 023822 26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC-LKTINSKKYGVDLVCFTSHPTTVIYSSKNGW--DES 102 (276)
Q Consensus 26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~--d~~ 102 (276)
+.+.+..|+++-.+-+.+-.++.++++..||.+.+++.+.-.. ...+......-.+.+....++.+.++....+ -+.
T Consensus 81 ~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~ 160 (319)
T KOG4714|consen 81 PFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDN 160 (319)
T ss_pred ceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccc
Confidence 3344445555444444455577899999999999999765211 1111111112223333444555544432111 345
Q ss_pred eEEEEccCCceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCC--cEE
Q 023822 103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQG--LVF 176 (276)
Q Consensus 103 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~--~~l 176 (276)
.+.|+++..+....-......|.+++-+|..+ .+++|+.||.+.+||.+.......+ +...+..+.|+|.. +++
T Consensus 161 ~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lf 240 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLF 240 (319)
T ss_pred eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhee
Confidence 56666654433222122233488999998554 7788889999999999987544433 66778899999965 677
Q ss_pred EEeeCCeEEEEeccc
Q 023822 177 AVAFGGYIRMFDARK 191 (276)
Q Consensus 177 ~~~~d~~i~~~d~~~ 191 (276)
+++.||.+..||..+
T Consensus 241 t~sedGslw~wdas~ 255 (319)
T KOG4714|consen 241 TCSEDGSLWHWDAST 255 (319)
T ss_pred EecCCCcEEEEcCCC
Confidence 777799999999874
No 306
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=3.6e-09 Score=79.81 Aligned_cols=139 Identities=17% Similarity=0.247 Sum_probs=101.8
Q ss_pred EEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC-----ceeeeecccCcce
Q 023822 50 VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN-----KYLRYFKGHHDRV 124 (276)
Q Consensus 50 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~i 124 (276)
++.+.+-.+-+-|+++|-. +.+. ..+.|.++.|...++.+..|.. +|.|..+|++.+ .+...+. |...|
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcR---ngeI~~iDLR~rnqG~~~~a~rly-h~Ssv 301 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCR---NGEIFVIDLRCRNQGNGWCAQRLY-HDSSV 301 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEeccc---CCcEEEEEeeecccCCCcceEEEE-cCcch
Confidence 3444556788888877643 2333 5567999999988999999998 999999999865 2344444 89999
Q ss_pred EEEEecc-CCCEEEEeeCCCeEEEEeccCcee---eeeEeecC----CCeeEecCC-CcEEEEeeCCeEEEEecccCCC
Q 023822 125 VSLSLCS-SKDCFISGSLDRTVLLWDQRAEKC---QGLLRVQG----RPAAAYDDQ-GLVFAVAFGGYIRMFDARKYEK 194 (276)
Q Consensus 125 ~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~----~~~~~~~~~-~~~l~~~~d~~i~~~d~~~~~~ 194 (276)
+++.... ++++|++.+.+|+|++||+|.-++ +..+..+- ..-+.+++. |-++++|.|...++|.++.+..
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCce
Confidence 9998776 778999999999999999998777 55543221 112334444 4555666689999999998664
No 307
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.96 E-value=7.4e-07 Score=77.95 Aligned_cols=201 Identities=12% Similarity=0.208 Sum_probs=136.4
Q ss_pred CCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEc----
Q 023822 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL---- 108 (276)
Q Consensus 33 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~---- 108 (276)
.++.|.++.|..+.+.++.+..+|.|.+-|.++... .....-...|.+++|+||.+.++..+. .+++.+-.-
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~---~~tll~mT~~f~~ 142 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITG---RQTLLFMTKDFEP 142 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeC---CcEEEEEeccccc
Confidence 346899999999999999999999999998776543 223334568999999999999998886 566655432
Q ss_pred cCCcee-------------------eeeccc---------------------CcceEEEEeccCCCEEEEeeC----C-C
Q 023822 109 HDNKYL-------------------RYFKGH---------------------HDRVVSLSLCSSKDCFISGSL----D-R 143 (276)
Q Consensus 109 ~~~~~~-------------------~~~~~~---------------------~~~i~~~~~~~~~~~l~~~~~----d-~ 143 (276)
-..+++ ..+.+. .+.=.++.|--||+++++... + .
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 111111 111110 111235899999999988332 3 7
Q ss_pred eEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee----CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC
Q 023822 144 TVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND 217 (276)
Q Consensus 144 ~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 217 (276)
.|++||.+ +.....- ......+++|-|.|.++++-. |+.|.+|.....+...+ ....+....++..++|+.+
T Consensus 223 kirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f-~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEF-VLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred eEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccccc-ccCCcccccchheeeecCC
Confidence 89999977 3322221 233356899999998888765 57799998776554332 2223334445899999999
Q ss_pred CcEEEE---eecCCcEEEEECCCCc
Q 023822 218 GRLMLL---TTMEGHIHVLDSFRGT 239 (276)
Q Consensus 218 ~~~l~~---~~~dg~i~i~d~~~~~ 239 (276)
+..||+ ......|++|-+.+..
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CCceeeeecccccceEEEEEecCeE
Confidence 999888 3444459999987654
No 308
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.95 E-value=6.8e-07 Score=74.35 Aligned_cols=221 Identities=10% Similarity=0.053 Sum_probs=132.5
Q ss_pred EcCCCCEEEEe-ecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCC-CCCceEEEEccCCceeeeecc
Q 023822 42 FHKSSSYLVTA-SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG-WDESLRLLSLHDNKYLRYFKG 119 (276)
Q Consensus 42 ~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~d~~i~~~d~~~~~~~~~~~~ 119 (276)
+.|||+.+... -..+.+.+.|.++.+...++.... ....+.++++++++++.+.++ ....+...+.........+..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 34566554322 234567777888777766665443 446788999999998886311 023343333322222222211
Q ss_pred cCcceEEEEeccCCCEEEEeeCCCeEEEEeccC-----ceeeeeE-eecCCCeeEecCCCcEEEEee--CCeEEEEeccc
Q 023822 120 HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA-----EKCQGLL-RVQGRPAAAYDDQGLVFAVAF--GGYIRMFDARK 191 (276)
Q Consensus 120 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~-~~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~ 191 (276)
. .+ -++.++|++... .+++|.+.|.++ .+....+ -......+.++|||++++++. +.++.++|+.+
T Consensus 279 ~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 279 A--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred H--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 0 00 123457776555 367899999998 4555555 344466899999999888887 89999999987
Q ss_pred CCCC--------CeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCC----------CcEEEEeecC--CCCC
Q 023822 192 YEKG--------PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR----------GTLLSTYNVK--PVSR 251 (276)
Q Consensus 192 ~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~--~~~~ 251 (276)
.+.. ........ -.......+|.++|+...+-.-|..|..||+.. ...+..+..+ ++|.
T Consensus 353 ~k~~~~~~~~~~~~vvaeve-vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~ 431 (635)
T PRK02888 353 LDDLFDGKIKPRDAVVAEPE-LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHN 431 (635)
T ss_pred hhhhhhccCCccceEEEeec-cCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCcccee
Confidence 5520 00011111 123456789999998777788899999999876 2344444311 1221
Q ss_pred CceEEEEECCCCcEEEEec
Q 023822 252 NSTLEASFSPEGMFVISGR 270 (276)
Q Consensus 252 ~~v~~~~~s~~g~~l~~~~ 270 (276)
.....=.-.|||++|++..
T Consensus 432 ~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 432 HASMGETKEADGKWLVSLN 450 (635)
T ss_pred eecCCCcCCCCCCEEEEcc
Confidence 1111122378999998853
No 309
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.95 E-value=2.2e-08 Score=74.80 Aligned_cols=191 Identities=14% Similarity=0.239 Sum_probs=129.5
Q ss_pred eeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc-----eeeeecccC------------cceEEEEeccCCC--EE
Q 023822 76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK-----YLRYFKGHH------------DRVVSLSLCSSKD--CF 136 (276)
Q Consensus 76 ~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~-----~~~~~~~~~------------~~i~~~~~~~~~~--~l 136 (276)
...|+++.|...|.++++|.. .|.|.+|.-+... ....++.|. ..|..+.|..++. .+
T Consensus 26 ad~ItaVefd~tg~YlatGDk---gGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDK---GGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred cceeeEEEeccccceEeecCC---CceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 346899999999999999987 7999999765432 122344443 2477888876543 67
Q ss_pred EEeeCCCeEEEEeccCceee----------------------eeE-----------------------eecCCCeeEecC
Q 023822 137 ISGSLDRTVLLWDQRAEKCQ----------------------GLL-----------------------RVQGRPAAAYDD 171 (276)
Q Consensus 137 ~~~~~d~~i~iwd~~~~~~~----------------------~~~-----------------------~~~~~~~~~~~~ 171 (276)
+..+.|.+|++|.+...... +.+ |...+.++.++.
T Consensus 103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 77888999999987643100 000 112234678888
Q ss_pred CCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCC-----CCceEEEECCCC-cEEEEeecCCcEEEEECCCCcE-----
Q 023822 172 QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDI-----SDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTL----- 240 (276)
Q Consensus 172 ~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~----- 240 (276)
+...+.++.|=.|.+|++..... .+.+.....|. .-|++..|+|.. ..+...+..|.|++-|++...+
T Consensus 183 D~et~lSaDdLrINLWnl~i~D~-sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 183 DKETLLSADDLRINLWNLEIIDG-SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred chheeeeccceeeeeccccccCC-ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 88889888899999999986553 34455554443 357889999964 5666777899999999873221
Q ss_pred -EEEeecC-------CCCCCceEEEEECCCCcEEEEec
Q 023822 241 -LSTYNVK-------PVSRNSTLEASFSPEGMFVISGR 270 (276)
Q Consensus 241 -~~~~~~~-------~~~~~~v~~~~~s~~g~~l~~~~ 270 (276)
+...... .+-...|..+.|+++|+++++-+
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd 299 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD 299 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec
Confidence 1111100 01235788999999999998754
No 310
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.94 E-value=5.7e-06 Score=62.97 Aligned_cols=180 Identities=16% Similarity=0.187 Sum_probs=112.1
Q ss_pred EEEEEEc-CCCCEEEEeecCCeEEEEEccCCeeeeeeee-----eeeceEEEEEeccCCeEEEeccCCC---C--CceEE
Q 023822 37 ISSMDFH-KSSSYLVTASDDESIRLYDVTAATCLKTINS-----KKYGVDLVCFTSHPTTVIYSSKNGW---D--ESLRL 105 (276)
Q Consensus 37 v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~~~---d--~~i~~ 105 (276)
...+++. +++ .|+.+...+ +.++|..+++....... .....+.+++.++|+..++...... . +.|..
T Consensus 42 ~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 6677777 565 455555544 56669888865544443 3456889999999996666543110 1 45666
Q ss_pred EEccCCceeeeecccCcceEEEEeccCCCEEE-EeeCCCeEEEEeccCcee----eeeE-eecC----CCeeEecCCCcE
Q 023822 106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDRTVLLWDQRAEKC----QGLL-RVQG----RPAAAYDDQGLV 175 (276)
Q Consensus 106 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~----~~~~-~~~~----~~~~~~~~~~~~ 175 (276)
++.. ++..... ..-...+.++|+|+++.|+ +-+..+.|..+++..... ...+ .... .-.++++.+|++
T Consensus 120 ~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l 197 (246)
T PF08450_consen 120 IDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL 197 (246)
T ss_dssp EETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E
T ss_pred ECCC-CeEEEEe-cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE
Confidence 7766 4433333 3345568999999998665 566788899999864322 1222 2222 336999999998
Q ss_pred EEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEE-CCCCcEEEEee
Q 023822 176 FAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKF-SNDGRLMLLTT 225 (276)
Q Consensus 176 l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~ 225 (276)
.++.. .+.|.++|.+ ++. .....+. ...+++++| -|+.+.|+..+
T Consensus 198 ~va~~~~~~I~~~~p~-G~~--~~~i~~p--~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 198 WVADWGGGRIVVFDPD-GKL--LREIELP--VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEETTTEEEEEETT-SCE--EEEEE-S--SSSEEEEEEESTTSSEEEEEE
T ss_pred EEEEcCCCEEEEECCC-ccE--EEEEcCC--CCCEEEEEEECCCCCEEEEEe
Confidence 88877 7999999987 332 2233333 347899999 46666565543
No 311
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.94 E-value=4.6e-07 Score=73.93 Aligned_cols=212 Identities=10% Similarity=0.081 Sum_probs=123.0
Q ss_pred CEEEEeecCCeEEEEEccCCeeeeeeeeeeece-----EEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccC
Q 023822 47 SYLVTASDDESIRLYDVTAATCLKTINSKKYGV-----DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH 121 (276)
Q Consensus 47 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~ 121 (276)
..++.+..++.+.-+|.++|+.+-.+....... ..-.. .+..++.+.. ++.+..+|..+++.+.......
T Consensus 161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~---~g~v~a~d~~~G~~~W~~~~~~ 235 (394)
T PRK11138 161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGD---NGRVSAVLMEQGQLIWQQRISQ 235 (394)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcC---CCEEEEEEccCChhhheecccc
Confidence 345556667777888887777766554321100 00111 1234555655 8889999999888766543111
Q ss_pred c-------ceEEEEecc--CCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEeeCCeEEEEecccC
Q 023822 122 D-------RVVSLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKY 192 (276)
Q Consensus 122 ~-------~i~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~ 192 (276)
. ....+.-+| .+..++.++.+|.+..+|..+++.+-.........+.. .++++++.+.++.+..+|..++
T Consensus 236 ~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~-~~~~vy~~~~~g~l~ald~~tG 314 (394)
T PRK11138 236 PTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFAV-DGGRIYLVDQNDRVYALDTRGG 314 (394)
T ss_pred CCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCccCcEE-ECCEEEEEcCCCeEEEEECCCC
Confidence 0 011111122 34567777889999999999987654443222222222 3456666667999999999876
Q ss_pred CCCCeeeeeecCC-CCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceE-EEEECCCCcEEEEec
Q 023822 193 EKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL-EASFSPEGMFVISGR 270 (276)
Q Consensus 193 ~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~~~~ 270 (276)
+. ....... .....+... .+.+|+.++.+|.|+..|..+|+.+...+. ....+. ...+ .+..|+.++
T Consensus 315 ~~----~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~---~~~~~~s~P~~--~~~~l~v~t 383 (394)
T PRK11138 315 VE----LWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV---DSSGFLSEPVV--ADDKLLIQA 383 (394)
T ss_pred cE----EEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc---CCCcceeCCEE--ECCEEEEEe
Confidence 53 2221111 111122222 245678899999999999999999888763 222222 1222 244788888
Q ss_pred CCCCC
Q 023822 271 VSPFS 275 (276)
Q Consensus 271 ~dg~v 275 (276)
.||.+
T Consensus 384 ~~G~l 388 (394)
T PRK11138 384 RDGTV 388 (394)
T ss_pred CCceE
Confidence 88864
No 312
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.92 E-value=1.2e-09 Score=91.92 Aligned_cols=190 Identities=12% Similarity=0.157 Sum_probs=136.0
Q ss_pred eeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCC--e
Q 023822 67 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR--T 144 (276)
Q Consensus 67 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~ 144 (276)
+....+..+....+|++|+...++|++|.. .|.|++|++.+|.......+|...|+-+.-+.+|.++++.+.-. -
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~---~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSH---AGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeec---cceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence 445667778888999999999999999998 99999999999999999999999999999888998766655433 4
Q ss_pred EEEEeccC-ceeeeeEeecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEE
Q 023822 145 VLLWDQRA-EKCQGLLRVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLML 222 (276)
Q Consensus 145 i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 222 (276)
..+|++.+ +...+.+ ..-.++.|+.....-+.|. .....+||+++...-........+....-+...|+|+..+++
T Consensus 1169 saLW~~~s~~~~~Hsf--~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSF--DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HHHhccccccCccccc--cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 67999875 2333333 2334677877655555555 577899999986542211112222233447789999988776
Q ss_pred EeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEec
Q 023822 223 LTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGR 270 (276)
Q Consensus 223 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 270 (276)
.|| .+||.+..+.++.|.. ....+ .=.|+|.|.-++.-+
T Consensus 1247 ---ndG--vLWDvR~~~aIh~FD~---ft~~~-~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAIHRFDQ---FTDYG-GGGFHPSGNEVIINS 1285 (1516)
T ss_pred ---eCc--eeeeeccHHHHhhhhh---heecc-cccccCCCceEEeec
Confidence 566 5899998888887762 22222 235889887776544
No 313
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.92 E-value=1.4e-06 Score=71.04 Aligned_cols=222 Identities=11% Similarity=0.040 Sum_probs=117.7
Q ss_pred eeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEc
Q 023822 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 108 (276)
Q Consensus 29 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~ 108 (276)
.+....-....+.++|+|++++. +.||.-.|+.....+... .+......|.+.+ .+++-.. ...|.++.-
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~---~~~I~I~kn 96 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLES---SSTIKIYKN 96 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-T---TS-EEEEET
T ss_pred cCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEEC---CCeEEEEEc
Confidence 33344556789999999999988 567888888854444322 3455678898844 4666655 788999743
Q ss_pred cCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEeeCCeEEEEe
Q 023822 109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFD 188 (276)
Q Consensus 109 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~~~d 188 (276)
-+.+....++. +..+..+-. |.+|...+.+ .|.+||..+++.+..+...++..+.|++++.+++..++..+.+++
T Consensus 97 ~~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~~i~il~ 171 (443)
T PF04053_consen 97 FKNEVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKDSIYILK 171 (443)
T ss_dssp TEE-TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S-SEEEEE
T ss_pred CccccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCCeEEEEE
Confidence 23333223332 122333422 7777777644 899999999999999977778899999999999999988899988
Q ss_pred cccC------CCCCe-eeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECC
Q 023822 189 ARKY------EKGPF-DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP 261 (276)
Q Consensus 189 ~~~~------~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~ 261 (276)
.... +.... .......-...|.+.+|..+ .++..+.. .++- +..|+.-.... ...++.=+...|
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~----ld~~~yllgy~~ 242 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAH----LDKPLYLLGYLP 242 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-----SS--EEEEEET
T ss_pred ecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEE----cCCceEEEEEEc
Confidence 6543 00000 01111111457888999876 34333333 6665 33444322222 234566666677
Q ss_pred CCcEEEEecCCCC
Q 023822 262 EGMFVISGRVSPF 274 (276)
Q Consensus 262 ~g~~l~~~~~dg~ 274 (276)
..+.++....|+.
T Consensus 243 ~~~~ly~~Dr~~~ 255 (443)
T PF04053_consen 243 KENRLYLIDRDGN 255 (443)
T ss_dssp TTTEEEEE-TT--
T ss_pred cCCEEEEEECCCC
Confidence 6566666655543
No 314
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=5.3e-08 Score=76.16 Aligned_cols=218 Identities=15% Similarity=0.165 Sum_probs=148.6
Q ss_pred cccceeeccCCCcEEEEEEcCCCCEEEEeec-CCeEEEEEccCCeeeeeeeeeeeceEEEEEe-ccC---CeEEEeccCC
Q 023822 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASD-DESIRLYDVTAATCLKTINSKKYGVDLVCFT-SHP---TTVIYSSKNG 98 (276)
Q Consensus 24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~---~~l~~~~~~~ 98 (276)
.+.+..++.|.+.|.+++.+-++..+.+.+. |..++++|+++-..+..++...-+ ..+.|. ..| ..+++....
T Consensus 43 vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~- 120 (558)
T KOG0882|consen 43 VEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFK- 120 (558)
T ss_pred eeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC-CceEEecCCCCeeeeEEeeccc-
Confidence 4556677889999999999999999999777 999999999876655433322111 112222 222 134444332
Q ss_pred CCCceEEEEccCCc--eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccC------ceeeeeE-----------
Q 023822 99 WDESLRLLSLHDNK--YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA------EKCQGLL----------- 159 (276)
Q Consensus 99 ~d~~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~------~~~~~~~----------- 159 (276)
++.+.++|-.... ....-.-|..+|..+.+.+-+..+++....|.|..|.... .+....+
T Consensus 121 -sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K 199 (558)
T KOG0882|consen 121 -SGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK 199 (558)
T ss_pred -CCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccc
Confidence 8999999965543 2233355899999999999999999999999999998773 1110011
Q ss_pred eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCC----------------eee------------eeecCCC-CCc
Q 023822 160 RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGP----------------FDI------------FSVGGDI-SDA 209 (276)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~----------------~~~------------~~~~~~~-~~i 209 (276)
......++.++|++..++.-. |..|++++.++++... +.+ ..+..+. ..-
T Consensus 200 ~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~ 279 (558)
T KOG0882|consen 200 AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVG 279 (558)
T ss_pred cccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCccc
Confidence 112345899999998877766 8999999998865211 000 0011121 234
Q ss_pred eEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822 210 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN 245 (276)
Q Consensus 210 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 245 (276)
+.+.|...|++|+.++.=| |++.++.++++.+.+-
T Consensus 280 ~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 280 TNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred ceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 5678999999999998776 8999999888877664
No 315
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.90 E-value=3e-07 Score=74.70 Aligned_cols=204 Identities=14% Similarity=0.164 Sum_probs=126.4
Q ss_pred EEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCC-CceEEEEccCCceeeeecccCcceEEEEeccCCCEE
Q 023822 58 IRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD-ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 136 (276)
Q Consensus 58 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d-~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 136 (276)
+.+-|.+ +...+.+......+..-.|+|+++.++........ ..+.++++++++....+. ..+.-...+|+|||++|
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l 252 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKL 252 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEE
Confidence 3444433 44445555555667788999999887766443213 469999999887655544 33344567899999976
Q ss_pred EEe-eCCCe--EEEEeccCceeeeeEeecCC-CeeEecCCCcEEEEeeC--C--eEEEEecccCCCCCeeeeeecCCCCC
Q 023822 137 ISG-SLDRT--VLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVAFG--G--YIRMFDARKYEKGPFDIFSVGGDISD 208 (276)
Q Consensus 137 ~~~-~~d~~--i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~d--~--~i~~~d~~~~~~~~~~~~~~~~~~~~ 208 (276)
+.+ ..||. |.++|+......+..+..++ ..-.|+|+|+.++..+| | .|.+++...... ........ .
T Consensus 253 ~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~riT~~~~--~ 327 (425)
T COG0823 253 AFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRLTFSGG--G 327 (425)
T ss_pred EEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---eEeeccCC--C
Confidence 654 44554 77778887774442233332 36789999988887774 4 466666665432 12222222 1
Q ss_pred ceEEEECCCCcEEEEeecC-Cc--EEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822 209 ANVVKFSNDGRLMLLTTME-GH--IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS 272 (276)
Q Consensus 209 i~~~~~~~~~~~l~~~~~d-g~--i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 272 (276)
-..-.|+|||++++..+.. |. |.+.|+.++...+.+. .......-.|.|+|+.+...+..
T Consensus 328 ~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt----~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 328 NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT----STYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc----ccccCCCCCcCCCCceEEEeccC
Confidence 2267899999999887743 44 6777776666544444 33333445677888776655443
No 316
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=2.2e-07 Score=78.48 Aligned_cols=110 Identities=10% Similarity=0.154 Sum_probs=89.1
Q ss_pred EEEEEEcCCCCEEEEee----cCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc
Q 023822 37 ISSMDFHKSSSYLVTAS----DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 112 (276)
Q Consensus 37 v~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~ 112 (276)
-+-..|+|...+||+++ ..|.|.||- ++|++.+...- +-.+++++|+|..-.|+.+-. -|.+.+|...+.+
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe---~g~~~v~~~~~~e 92 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWE---MGVSDVQKTNTTE 92 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccc---cceeEEEecCCce
Confidence 34467999999998876 457888884 66765443322 224667999999888888887 8999999988877
Q ss_pred eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEecc
Q 023822 113 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR 151 (276)
Q Consensus 113 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 151 (276)
.......|+.+|..+.|+++|..++++..-|.+.+|...
T Consensus 93 ~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 93 THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 766677899999999999999999999999999999876
No 317
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=3.6e-07 Score=76.52 Aligned_cols=154 Identities=12% Similarity=0.175 Sum_probs=112.8
Q ss_pred eeccCCCcEEEEEEcCC-------------CCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEecc-----CCe
Q 023822 29 SFRDYNGRISSMDFHKS-------------SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH-----PTT 90 (276)
Q Consensus 29 ~~~~h~~~v~~~~~~~~-------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~ 90 (276)
.|..|.+.|.-..+.-+ |.++++|+.||.|.|-.+.+.+....+..+ .++.+++++|+ .+.
T Consensus 53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~-rpiksial~Pd~~~~~sk~ 131 (846)
T KOG2066|consen 53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK-RPIKSIALHPDFSRQQSKQ 131 (846)
T ss_pred eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecC-CcceeEEeccchhhhhhhh
Confidence 35567877776666544 899999999999999999888877766654 48999999998 567
Q ss_pred EEEeccCCCCCceEEEEccC--CceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecC-----
Q 023822 91 VIYSSKNGWDESLRLLSLHD--NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG----- 163 (276)
Q Consensus 91 l~~~~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----- 163 (276)
+++|+. .| +.++.-+- .+....+..-.++|.++.| .|+++|-++.+| |++||+.+.+.+..+....
T Consensus 132 fv~GG~---ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~ 204 (846)
T KOG2066|consen 132 FVSGGM---AG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRP 204 (846)
T ss_pred eeecCc---ce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCc
Confidence 888886 66 77775321 1222245556789999999 578888888776 8999999988777662211
Q ss_pred ---CCeeEecCCCcEEEEeeCCeEEEEeccc
Q 023822 164 ---RPAAAYDDQGLVFAVAFGGYIRMFDARK 191 (276)
Q Consensus 164 ---~~~~~~~~~~~~l~~~~d~~i~~~d~~~ 191 (276)
.+.+.|.++.+ ++.|...+|++..++.
T Consensus 205 e~fpphl~W~~~~~-LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 205 ELFPPHLHWQDEDR-LVIGWGDSVKICSIKK 234 (846)
T ss_pred ccCCCceEecCCCe-EEEecCCeEEEEEEec
Confidence 23566666554 5667777899998884
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.89 E-value=1.1e-07 Score=80.71 Aligned_cols=178 Identities=15% Similarity=0.191 Sum_probs=128.5
Q ss_pred cCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCe
Q 023822 87 HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA 166 (276)
Q Consensus 87 ~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 166 (276)
++..++.|+- ...+..+|+++.+..+...-..+.|.-|+. +++.+.+|...|+|.+-|.++.+.++++..+....
T Consensus 146 ~~~~~i~Gg~---Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~si 220 (1118)
T KOG1275|consen 146 GPSTLIMGGL---QEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSI 220 (1118)
T ss_pred CCcceeecch---hhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccce
Confidence 3455666665 778889999988877766544445555544 67899999999999999999999999998777777
Q ss_pred eEecCCCcEEEEee----------CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC-CcEEEEeecCCcEEEEEC
Q 023822 167 AAYDDQGLVFAVAF----------GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDS 235 (276)
Q Consensus 167 ~~~~~~~~~l~~~~----------d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~ 235 (276)
..|+-+|++|+++. |..|+|||+|..+. +..+.-+. ...-+.|+|. ...+++++..|...+-|.
T Consensus 221 SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra----l~PI~~~~-~P~flrf~Psl~t~~~V~S~sGq~q~vd~ 295 (1118)
T KOG1275|consen 221 SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA----LSPIQFPY-GPQFLRFHPSLTTRLAVTSQSGQFQFVDT 295 (1118)
T ss_pred eeeeccCCeEEEeecccccccccccchhhhhhhhhhhc----cCCccccc-CchhhhhcccccceEEEEecccceeeccc
Confidence 88888887776654 45689999998664 11111111 2245678885 356888899999999994
Q ss_pred CCC-cE-EEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 236 FRG-TL-LSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 236 ~~~-~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
.+- .+ ...+... .....+..+.+|++|+.|+.|..+|.|
T Consensus 296 ~~lsNP~~~~~~v~-p~~s~i~~fDiSsn~~alafgd~~g~v 336 (1118)
T KOG1275|consen 296 ATLSNPPAGVKMVN-PNGSGISAFDISSNGDALAFGDHEGHV 336 (1118)
T ss_pred cccCCCccceeEEc-cCCCcceeEEecCCCceEEEecccCcE
Confidence 321 11 1122222 245669999999999999999999865
No 319
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.89 E-value=9.8e-07 Score=71.74 Aligned_cols=190 Identities=15% Similarity=0.174 Sum_probs=122.4
Q ss_pred eccCCCcEEEEEEcCCCCEEEEee---cC-CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822 30 FRDYNGRISSMDFHKSSSYLVTAS---DD-ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 105 (276)
Q Consensus 30 ~~~h~~~v~~~~~~~~~~~l~~~~---~d-~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~ 105 (276)
+..-...+..-+|+|++..++..+ .. ..+.++++++++...... ..+.-..-+|+|+++.++.+......-.|.+
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL 266 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence 334456677889999998776543 22 468999999887655544 2334556789999999998877533556777
Q ss_pred EEccCCceeeeecccCcceEEEEeccCCCEEEEeeC-CC--eEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-
Q 023822 106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF- 180 (276)
Q Consensus 106 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~- 180 (276)
+|+.++...+ +....+.-..-.|+|||+.++..+. .| .|.++|.+........ ....-..-.++|+|+.++...
T Consensus 267 ~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 267 MDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred EcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEec
Confidence 7887776333 5433444446789999997776654 44 4777777776654433 333333788999999888777
Q ss_pred -CCe--EEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec
Q 023822 181 -GGY--IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM 226 (276)
Q Consensus 181 -d~~--i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 226 (276)
+|. |.+.|+.+... .... ........-.|.|+|+.+...+.
T Consensus 346 ~~g~~~i~~~~~~~~~~--~~~l---t~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 346 SGGQWDIDKNDLASGGK--IRIL---TSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred cCCceeeEEeccCCCCc--EEEc---cccccCCCCCcCCCCceEEEecc
Confidence 555 56666655432 1121 22223344578888887766544
No 320
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=1.8e-06 Score=73.03 Aligned_cols=223 Identities=10% Similarity=0.109 Sum_probs=142.0
Q ss_pred EEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeec-eEEEEEeccCCeEEEeccCCC-CC-ceEEEEccCC---c--
Q 023822 41 DFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYG-VDLVCFTSHPTTVIYSSKNGW-DE-SLRLLSLHDN---K-- 112 (276)
Q Consensus 41 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~~~~-d~-~i~~~d~~~~---~-- 112 (276)
+|++.+..++.|+.+|.|.+.+ ...+.+..++.+... |..+....+...|++.+.+.. +. .+++|+++.- +
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 4567788999999999998887 344555777777766 444444444467777776321 22 6999998643 1
Q ss_pred -eee--eecc-----cCcceEEEEeccCCCEEEEeeCCCeEEEEecc---CceeeeeE---eecCCCeeEecCCCcE-EE
Q 023822 113 -YLR--YFKG-----HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR---AEKCQGLL---RVQGRPAAAYDDQGLV-FA 177 (276)
Q Consensus 113 -~~~--~~~~-----~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~---~~~~~~~~~~~~~~~~-l~ 177 (276)
++. .+.. .+.++.+++.+.+-+.+|.|-.+|.|..+.=+ .......+ ...+++.+++..++.. +.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 221 1112 24578899999998899999999999988522 11111111 4456888888887765 55
Q ss_pred EeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEE
Q 023822 178 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 257 (276)
Q Consensus 178 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 257 (276)
+.+-.+|.+|.+.... | ....+..+..+.+|..+++....+++++. ..+.+|+....+.-..+.. +++.. +
T Consensus 189 v~Tt~~V~~y~l~gr~--p-~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~--g~kk~---~ 259 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRT--P-SLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEV--GEKKE---M 259 (933)
T ss_pred EEecceeEEEEecCCC--c-ceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecC--CCeEE---E
Confidence 5556889999998433 1 13335667778999999986654555543 4699999876665555542 23332 2
Q ss_pred EECCCCcEEEEecCCC
Q 023822 258 SFSPEGMFVISGRVSP 273 (276)
Q Consensus 258 ~~s~~g~~l~~~~~dg 273 (276)
-|...|.+|+....-|
T Consensus 260 ~~~~~g~~L~v~~~~~ 275 (933)
T KOG2114|consen 260 LVFSFGLLLCVTTDKG 275 (933)
T ss_pred EEEecCEEEEEEccCC
Confidence 3333455555544443
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2e-07 Score=72.01 Aligned_cols=240 Identities=10% Similarity=0.099 Sum_probs=134.9
Q ss_pred cccceeeccCCCcEEEEEEcCCCC-EEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCc
Q 023822 24 MEVGMSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES 102 (276)
Q Consensus 24 ~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~ 102 (276)
++....+.+|...|..++|+|..+ ++..++.+..|+|.|+++...+..+..+ ..+++++|..+..+.+.++.. +|.
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~--nG~ 259 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQ--NGM 259 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEecc--Cce
Confidence 344456778889999999999766 7888999999999999999998888887 689999999988877776653 899
Q ss_pred eEEEEccCCce-eeeecc--cCcceEEEEe------ccCCCEEEEeeCCCeEEEEeccCc--eeeeeEeec---CCCeeE
Q 023822 103 LRLLSLHDNKY-LRYFKG--HHDRVVSLSL------CSSKDCFISGSLDRTVLLWDQRAE--KCQGLLRVQ---GRPAAA 168 (276)
Q Consensus 103 i~~~d~~~~~~-~~~~~~--~~~~i~~~~~------~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~---~~~~~~ 168 (276)
|.+||++..+- +..+.+ ...+|..++. .+.+.+++..+.+ +..|++... .....++.. ....+.
T Consensus 260 VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismq 337 (463)
T KOG1645|consen 260 VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQ 337 (463)
T ss_pred EEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeee
Confidence 99999986542 222211 1223333332 2234444444432 455654422 111212111 112344
Q ss_pred ecCCCcEEEEee--C---CeEEEEecccCCCCCeeee-eecCC----CC---CceEEEECCCCcEEEE-eecCCcEEEEE
Q 023822 169 YDDQGLVFAVAF--G---GYIRMFDARKYEKGPFDIF-SVGGD----IS---DANVVKFSNDGRLMLL-TTMEGHIHVLD 234 (276)
Q Consensus 169 ~~~~~~~l~~~~--d---~~i~~~d~~~~~~~~~~~~-~~~~~----~~---~i~~~~~~~~~~~l~~-~~~dg~i~i~d 234 (276)
+++..+.+..+. + -+++..=.+........+. ....+ .. .-..+.-.++.++++. +...+.+.+||
T Consensus 338 y~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D 417 (463)
T KOG1645|consen 338 YHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQD 417 (463)
T ss_pred ecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEec
Confidence 444333333332 1 0111100000000000000 00000 00 0011222344455544 55567899999
Q ss_pred CCCCcEEEEeecCCCCCCceEEEEECCC--CcEEEEecCC
Q 023822 235 SFRGTLLSTYNVKPVSRNSTLEASFSPE--GMFVISGRVS 272 (276)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~d 272 (276)
..+++.++.+. ...+|.+++...- +.+|+.-.+|
T Consensus 418 ~~s~evvQ~l~----~~epv~Dicp~~~n~~syLa~LTd~ 453 (463)
T KOG1645|consen 418 PHSFEVVQTLA----LSEPVLDICPNDTNGSSYLALLTDD 453 (463)
T ss_pred cchhheeeecc----cCcceeecceeecCCcchhhheecc
Confidence 99999999997 4578888776442 3466655444
No 322
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=1.1e-05 Score=65.42 Aligned_cols=220 Identities=14% Similarity=0.118 Sum_probs=152.6
Q ss_pred EEEEEcCCCCEE-EEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeee
Q 023822 38 SSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY 116 (276)
Q Consensus 38 ~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~ 116 (276)
..++.++.++.+ ++...++.|.+.|..+.+......... ....+++.++++.+.++.....++.+.+.|..+++....
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 467888877754 444456899999987777666655433 677899999999998887632378999999998888877
Q ss_pred ecccCcceEEEEeccCCCEEEEee-CCCeEEEEeccCceeee-e----E-eecCCCeeEecCCCcEEEEee--C--CeEE
Q 023822 117 FKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQG-L----L-RVQGRPAAAYDDQGLVFAVAF--G--GYIR 185 (276)
Q Consensus 117 ~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~-~----~-~~~~~~~~~~~~~~~~l~~~~--d--~~i~ 185 (276)
...-..+ ..+++.|+++.++.+. .++.|.+.|........ . . .......+.++|++..+.+.. + +.+.
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~ 234 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVL 234 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEE
Confidence 5543344 8899999999666555 68899999987776653 1 2 334456789999998666665 2 4788
Q ss_pred EEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec-CCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCC
Q 023822 186 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 262 (276)
Q Consensus 186 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 262 (276)
..|..+... .......... ....+..+|+|+++.+... .+.+.+.|..+......+.........+..+++.+.
T Consensus 235 ~id~~~~~v--~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 235 KIDTATGNV--TATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EEeCCCceE--EEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 888776442 1110111122 4567899999999888744 488999999988887776532222333555555553
No 323
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.84 E-value=4.5e-08 Score=71.27 Aligned_cols=193 Identities=14% Similarity=0.146 Sum_probs=113.8
Q ss_pred EEEEEEcCCCCEEEEeecCCeEEEEEccCCeeee------------eeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK------------TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104 (276)
Q Consensus 37 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~------------~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~ 104 (276)
|+.+.+..+ ..|+++..++.+..+....+.+.. .+..+.++-.+-..+--++.++++.. ||.+.
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~---dg~~~ 114 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYA---DGSLA 114 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCC---CceEE
Confidence 556666543 467777777766665544333222 12222222222222334567788877 99999
Q ss_pred EEEccCCcee-eeecc-cCcceEEEEeccCCCEEEEeeC-----CCeEEEEeccCceeeee--EeecCCCeeEecCCC-c
Q 023822 105 LLSLHDNKYL-RYFKG-HHDRVVSLSLCSSKDCFISGSL-----DRTVLLWDQRAEKCQGL--LRVQGRPAAAYDDQG-L 174 (276)
Q Consensus 105 ~~d~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~-~ 174 (276)
+++.+.-..+ ..+.. |.+ -.+.+....++.+.++.- -+..+.|+++..+.... .....+.+++-+|.. +
T Consensus 115 v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~ 193 (319)
T KOG4714|consen 115 VFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQH 193 (319)
T ss_pred EEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCccccc
Confidence 9987652111 11111 111 122223334444444321 23456676665433222 234457788888865 4
Q ss_pred EEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECC-CCcEEEEeecCCcEEEEECCC
Q 023822 175 VFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFR 237 (276)
Q Consensus 175 ~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~ 237 (276)
++++++ ||.+.+||.++... ....+..|..+++.+-|+| ++..|+++++||.+.-||..+
T Consensus 194 ~v~cgt~dg~~~l~d~rn~~~---p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 194 LVCCGTDDGIVGLWDARNVAM---PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEEEecCCCeEEEEEcccccc---hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 555555 89999999998632 2444667899999999999 467899999999999999653
No 324
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.83 E-value=8.2e-06 Score=61.29 Aligned_cols=205 Identities=12% Similarity=0.189 Sum_probs=111.1
Q ss_pred eeeccCCCcEEEEEEcCCCC-EEEEeecCCeEEEEEccCCeeeeeeeeee-eceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822 28 MSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRL 105 (276)
Q Consensus 28 ~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~d~~i~~ 105 (276)
+.+.+-...+..++|+|+.+ ++++....+.|...+. +|+.++.+.... +..-.+++..++.++++.-. ++.+.+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er---~~~L~~ 90 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEER---DQRLYI 90 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETT---TTEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcC---CCcEEE
Confidence 34556566799999999755 6666777888888886 578887775442 45778888877766665544 888999
Q ss_pred EEccCCc------eeeee-----cccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCc
Q 023822 106 LSLHDNK------YLRYF-----KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGL 174 (276)
Q Consensus 106 ~d~~~~~------~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (276)
+++.... ....+ ..++..+-.++|.|.++.|+.+-...-..+|.++...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~-------------------- 150 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP-------------------- 150 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT--------------------
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc--------------------
Confidence 9884321 11111 1244568889999987777776555444444443211
Q ss_pred EEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC-CcEEEEeecCCcEEEEECCCCcEEEEeecCCCCC--
Q 023822 175 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR-- 251 (276)
Q Consensus 175 ~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-- 251 (276)
.+..+.+.+..... ........+.+++++|. |.+++....+..|..+| .+|+.+..+....+..
T Consensus 151 -----~~~~~~~~~~~~~~-------~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl 217 (248)
T PF06977_consen 151 -----GGFDLFVSDDQDLD-------DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGL 217 (248)
T ss_dssp ------SS--EEEE-HHHH--------HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-
T ss_pred -----Cccceeeccccccc-------cccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCc
Confidence 01112222211100 01112234778999996 56666677788899999 7888887776433211
Q ss_pred ----CceEEEEECCCCcEEEEe
Q 023822 252 ----NSTLEASFSPEGMFVISG 269 (276)
Q Consensus 252 ----~~v~~~~~s~~g~~l~~~ 269 (276)
...-.++|.++|++.+++
T Consensus 218 ~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 218 SKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp SS---SEEEEEE-TT--EEEEE
T ss_pred ccccCCccEEEECCCCCEEEEc
Confidence 246789999999877665
No 325
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=6e-07 Score=75.26 Aligned_cols=170 Identities=12% Similarity=0.082 Sum_probs=118.4
Q ss_pred ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee
Q 023822 78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG 157 (276)
Q Consensus 78 ~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 157 (276)
.+.++++ .+++++.|+. +|.|++++.... + .+...|... ..+|.++++|+.||+|.|-.+-+.+...
T Consensus 41 ~is~~av--~~~~~~~GtH---~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 41 AISCCAV--HDKFFALGTH---RGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred HHHHHHh--hcceeeeccc---cceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 4556666 4678888888 999999987543 2 333345443 5689999999999999999998888777
Q ss_pred eE-eecCCCeeEecCC-----CcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcE
Q 023822 158 LL-RVQGRPAAAYDDQ-----GLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHI 230 (276)
Q Consensus 158 ~~-~~~~~~~~~~~~~-----~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 230 (276)
.+ -..++..++++|+ .+.+++|+ .| +.++.-+-..... ........++|.++.|. |.++|-++.+| |
T Consensus 108 ~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~--~v~l~~~eG~I~~i~W~--g~lIAWand~G-v 181 (846)
T KOG2066|consen 108 QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD--SVVLSEGEGPIHSIKWR--GNLIAWANDDG-V 181 (846)
T ss_pred eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcc--ceeeecCccceEEEEec--CcEEEEecCCC-c
Confidence 66 3456779999997 24444444 56 8887755433211 22345567899999995 77888888777 8
Q ss_pred EEEECCCCcEEEEeecCCC---CCCceEEEEECCCCcEE
Q 023822 231 HVLDSFRGTLLSTYNVKPV---SRNSTLEASFSPEGMFV 266 (276)
Q Consensus 231 ~i~d~~~~~~~~~~~~~~~---~~~~v~~~~~s~~g~~l 266 (276)
++||+.+++.+..+..... .......+.|.++.+++
T Consensus 182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV 220 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV 220 (846)
T ss_pred EEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE
Confidence 9999999988877763210 12223457787776544
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.79 E-value=6.2e-06 Score=72.48 Aligned_cols=184 Identities=13% Similarity=0.135 Sum_probs=126.3
Q ss_pred eceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEec----cC
Q 023822 77 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ----RA 152 (276)
Q Consensus 77 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~----~~ 152 (276)
..|.++.|..+...++.+.. .|.|.+-|..+.... ....-...|.+++|+||+..++..+..+++.+-+- -.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~---~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITA---LGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred cceEEEEEecccceEEEEec---CCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence 57999999999999998888 999999988776432 22335678999999999999999888888776432 11
Q ss_pred ceee-------------------eeEee-----------------------cCCCeeEecCCCcEEEEee-----C-CeE
Q 023822 153 EKCQ-------------------GLLRV-----------------------QGRPAAAYDDQGLVFAVAF-----G-GYI 184 (276)
Q Consensus 153 ~~~~-------------------~~~~~-----------------------~~~~~~~~~~~~~~l~~~~-----d-~~i 184 (276)
.+.+ ..++. ..-..+.|-.||.+++++. + +.|
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 1110 11111 1123588999999999865 5 799
Q ss_pred EEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee---cCCcEEEEECCCCcEEEEeecCC-CCCCceEEEEEC
Q 023822 185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT---MEGHIHVLDSFRGTLLSTYNVKP-VSRNSTLEASFS 260 (276)
Q Consensus 185 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~s 260 (276)
++||.+ +.. ..........-.+++|-|.|..+++-. .|+.|.+|. ++|-....+.... .....+..++|+
T Consensus 225 rV~drE-g~L----ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wn 298 (1265)
T KOG1920|consen 225 RVYDRE-GAL----NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWN 298 (1265)
T ss_pred EEeccc-chh----hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeeec
Confidence 999987 322 111112223446799999999888853 466799998 5665544443211 233448999999
Q ss_pred CCCcEEEEec
Q 023822 261 PEGMFVISGR 270 (276)
Q Consensus 261 ~~g~~l~~~~ 270 (276)
.++..||+-.
T Consensus 299 s~sdiLAv~~ 308 (1265)
T KOG1920|consen 299 SNSDILAVVT 308 (1265)
T ss_pred CCCCceeeee
Confidence 9999998843
No 327
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.75 E-value=3.8e-05 Score=61.75 Aligned_cols=227 Identities=11% Similarity=0.156 Sum_probs=127.4
Q ss_pred CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeee-----------------eeceEEEEEeccCCeEEEecc
Q 023822 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK-----------------KYGVDLVCFTSHPTTVIYSSK 96 (276)
Q Consensus 34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~l~~~~~ 96 (276)
...+....|+|+|+.+|... ++.|.+++..+++..+.-... -..-..+.|+|++++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 56788899999999999874 578999998777544332211 112357889999999988765
Q ss_pred CCCCCc-----------------------------------eEEEEccCCceeee--e---cccCcceEEEEeccCCCEE
Q 023822 97 NGWDES-----------------------------------LRLLSLHDNKYLRY--F---KGHHDRVVSLSLCSSKDCF 136 (276)
Q Consensus 97 ~~~d~~-----------------------------------i~~~d~~~~~~~~~--~---~~~~~~i~~~~~~~~~~~l 136 (276)
+ +.. +.++|+.+++.... . ..-...+..+.|.++++.|
T Consensus 121 d--~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l 198 (353)
T PF00930_consen 121 D--EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRL 198 (353)
T ss_dssp E---TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred C--CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEE
Confidence 3 222 33444444433211 1 1234457889999998844
Q ss_pred EEe--eCCC---eEEEEeccCceeeeeEeecC------CCeeEec-CCC-cEEEEee-CC--eEEEEecccCCCCCeeee
Q 023822 137 ISG--SLDR---TVLLWDQRAEKCQGLLRVQG------RPAAAYD-DQG-LVFAVAF-GG--YIRMFDARKYEKGPFDIF 200 (276)
Q Consensus 137 ~~~--~~d~---~i~iwd~~~~~~~~~~~~~~------~~~~~~~-~~~-~~l~~~~-d~--~i~~~d~~~~~~~~~~~~ 200 (276)
+.. .++. .+.++|..++.......... .....+. +++ .++..+. +| +|.+++..... ..
T Consensus 199 ~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-----~~ 273 (353)
T PF00930_consen 199 WVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-----PR 273 (353)
T ss_dssp EEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-----EE
T ss_pred EEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-----ee
Confidence 433 3332 46677887665544332111 1244443 444 5555554 55 55555655433 22
Q ss_pred eecCCCCCceE-EEECCCCcEEEE-eecC----CcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822 201 SVGGDISDANV-VKFSNDGRLMLL-TTME----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRV 271 (276)
Q Consensus 201 ~~~~~~~~i~~-~~~~~~~~~l~~-~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 271 (276)
.+......|.. +.++++++.|+. +..+ ..|..-++..+..+..+... .+.-..+.|||+|++++....
T Consensus 274 ~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~---~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 274 QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCE---DGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTT---SSTTEEEEE-TTSSEEEEEEE
T ss_pred ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCC---CCCceEEEECCCCCEEEEEEc
Confidence 34444456644 678888766544 4432 24666666634555566532 222268999999998876543
No 328
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.74 E-value=4.8e-06 Score=68.03 Aligned_cols=186 Identities=13% Similarity=0.080 Sum_probs=114.3
Q ss_pred CCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceE
Q 023822 46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV 125 (276)
Q Consensus 46 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~ 125 (276)
+..++.++.++.+..+|.++|+.+-.............. .+..++++.. ++.+.-+|..+++.+..+......+.
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~---~g~l~ald~~tG~~~W~~~~~~~~~~ 194 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTS---NGMLQALNESDGAVKWTVNLDVPSLT 194 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECC---CCEEEEEEccCCCEeeeecCCCCccc
Confidence 346677778899999999999887766543221111112 2445666665 89999999999998887653211100
Q ss_pred E-EEecc--CCCEEEEeeCCCeEEEEeccCceeeeeEeecCC---------CeeEecC---CCcEEEEeeCCeEEEEecc
Q 023822 126 S-LSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR---------PAAAYDD---QGLVFAVAFGGYIRMFDAR 190 (276)
Q Consensus 126 ~-~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~---~~~~l~~~~d~~i~~~d~~ 190 (276)
. ..-+| .+..++.++.++.+..+|..+++..-....... ..+..+| ++.+++++.++.+..+|..
T Consensus 195 ~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 195 LRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred ccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 0 00111 223566777889999999988876544321110 0111122 5666666779999999998
Q ss_pred cCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEe
Q 023822 191 KYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 244 (276)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 244 (276)
+++. ....... ....+.. .+..++.++.+|.+..+|..+|+.+-..
T Consensus 275 tG~~----~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 275 SGQI----VWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQ 320 (394)
T ss_pred CCCE----EEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence 8764 2222111 1111222 3556778889999999999999876543
No 329
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.74 E-value=9.1e-06 Score=65.30 Aligned_cols=216 Identities=12% Similarity=0.109 Sum_probs=118.2
Q ss_pred cCCCCEEEEee---------cCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCce
Q 023822 43 HKSSSYLVTAS---------DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY 113 (276)
Q Consensus 43 ~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~ 113 (276)
|||+++++... ..+.+.++|+++++....... ...+....|+|+++.++... ++.|.+++..+++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~----~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR----DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE----TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe----cCceEEEECCCCCe
Confidence 57788777632 346789999998765544433 66789999999999999997 88999999877744
Q ss_pred eeee-cc-------c---------CcceEEEEeccCCCEEEEeeCCC-e-------------------------------
Q 023822 114 LRYF-KG-------H---------HDRVVSLSLCSSKDCFISGSLDR-T------------------------------- 144 (276)
Q Consensus 114 ~~~~-~~-------~---------~~~i~~~~~~~~~~~l~~~~~d~-~------------------------------- 144 (276)
.+.- .+ - -+.-..+.|+||+++|+....|. .
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~n 155 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPN 155 (353)
T ss_dssp EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS--
T ss_pred EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcC
Confidence 3321 11 0 11235688999999888665431 1
Q ss_pred ----EEEEeccCceeeeeE-e------ecCCCeeEecCCCc-EEEEee--C---CeEEEEecccCCCCCeeeeeecCCCC
Q 023822 145 ----VLLWDQRAEKCQGLL-R------VQGRPAAAYDDQGL-VFAVAF--G---GYIRMFDARKYEKGPFDIFSVGGDIS 207 (276)
Q Consensus 145 ----i~iwd~~~~~~~~~~-~------~~~~~~~~~~~~~~-~l~~~~--d---~~i~~~d~~~~~~~~~~~~~~~~~~~ 207 (276)
+.++|+.+++....- . ..-+..+.|.+++. +++.-. + ..+.++|..++...........+--.
T Consensus 156 p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~ 235 (353)
T PF00930_consen 156 PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVD 235 (353)
T ss_dssp -EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSS
T ss_pred CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCccee
Confidence 223333333221100 0 01123567778877 444333 1 34566677664432222111111112
Q ss_pred CceEEEEC-CCC-cEEEEeecCCc--EEEEECCCCcEEEEeecCCCCCCceEE-EEECCCCcEEE
Q 023822 208 DANVVKFS-NDG-RLMLLTTMEGH--IHVLDSFRGTLLSTYNVKPVSRNSTLE-ASFSPEGMFVI 267 (276)
Q Consensus 208 ~i~~~~~~-~~~-~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~ 267 (276)
......|. +++ .+|.....+|. |.+++...+.. ..+. ...-.|.. +.|+++++.|+
T Consensus 236 ~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT---~G~~~V~~i~~~d~~~~~iy 296 (353)
T PF00930_consen 236 VYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLT---SGDWEVTSILGWDEDNNRIY 296 (353)
T ss_dssp SSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS----SSS-EEEEEEEECTSSEEE
T ss_pred eecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccc---cCceeecccceEcCCCCEEE
Confidence 23355654 555 45555556775 55566555553 3444 24455644 67888876554
No 330
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.72 E-value=5.1e-09 Score=85.18 Aligned_cols=202 Identities=14% Similarity=0.149 Sum_probs=136.2
Q ss_pred CCcEEEEEEcCC--CCEEEEeecCCeEEEEEccCCee--eeeeeeeeeceEEEEEecc-CCeEEEeccC-CCCCceEEEE
Q 023822 34 NGRISSMDFHKS--SSYLVTASDDESIRLYDVTAATC--LKTINSKKYGVDLVCFTSH-PTTVIYSSKN-GWDESLRLLS 107 (276)
Q Consensus 34 ~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~-~~d~~i~~~d 107 (276)
...+.|++++-+ ...++.|..+|.|-+-......- ......+..++++++|++- .+.|+.+-.. ..|..+.+||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 456788887653 34788999999999887764321 2334567778999999985 4455554321 2367899999
Q ss_pred ccCC--ceee--eecc-cCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc-eeeeeEeecCCCeeEecC-CCcEEEEee
Q 023822 108 LHDN--KYLR--YFKG-HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE-KCQGLLRVQGRPAAAYDD-QGLVFAVAF 180 (276)
Q Consensus 108 ~~~~--~~~~--~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~-~~~~l~~~~ 180 (276)
+.++ .+.. .+.. ......+++|..+.+++.+|.....++++|+|.. .....+....+..+..+| ...+++...
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~ 215 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS 215 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc
Confidence 9876 2222 2222 2334568889888889999999999999999943 333444555677788888 778888888
Q ss_pred CCeEEEEe-cccCCCCCeeeeee--cCCCCCceEEEECCCC-cEEEEeec-CCcEEEEECC
Q 023822 181 GGYIRMFD-ARKYEKGPFDIFSV--GGDISDANVVKFSNDG-RLMLLTTM-EGHIHVLDSF 236 (276)
Q Consensus 181 d~~i~~~d-~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~-~~l~~~~~-dg~i~i~d~~ 236 (276)
|+.|.+|| .++.+. ++..... ......+..++|+|.. ..+++... .++|+++|+.
T Consensus 216 dg~iAiwD~~rnien-pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 216 DGDIAIWDTYRNIEN-PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cCceeeccchhhhcc-HHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 99999999 444332 2222111 1122358889999953 23555554 4789999975
No 331
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.70 E-value=6.7e-05 Score=58.44 Aligned_cols=220 Identities=14% Similarity=0.112 Sum_probs=133.5
Q ss_pred EEEEcCCCCEE-EEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeee
Q 023822 39 SMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF 117 (276)
Q Consensus 39 ~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~ 117 (276)
...|.++...| .+--..+.|.-|+..+++.. .+... ..+.++.....+..|+++ +..+.+++.+++.....+
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p-~~~~~~~~~d~~g~Lv~~-----~~g~~~~~~~~~~~~t~~ 101 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSP-GGFSSGALIDAGGRLIAC-----EHGVRLLDPDTGGKITLL 101 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECC-CCcccceeecCCCeEEEE-----ccccEEEeccCCceeEEe
Confidence 34577766644 45556788889988766432 22222 234555555455556555 455777777655542322
Q ss_pred c----c-cCcceEEEEeccCCCEEEEeeC-----------CCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEe
Q 023822 118 K----G-HHDRVVSLSLCSSKDCFISGSL-----------DRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVA 179 (276)
Q Consensus 118 ~----~-~~~~i~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~ 179 (276)
. + .....+.....|+|.+.++... -|.|+.+|. .+..++.+ +....+.++|+|+++.|..+
T Consensus 102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEE
Confidence 1 1 1234567888899986554433 133445554 34444433 24556789999999777777
Q ss_pred e--CCeEEEEeccc--CCC-CCeeeeeecCCCCCceEEEECCCCcEEEEeecCC-cEEEEECCCCcEEEEeecCCCCCCc
Q 023822 180 F--GGYIRMFDARK--YEK-GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-HIHVLDSFRGTLLSTYNVKPVSRNS 253 (276)
Q Consensus 180 ~--d~~i~~~d~~~--~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~ 253 (276)
. .+.|..|++.. ... ...............-.++...+|.+.+++-.+| .|.+|+.. |+++..+.. ....
T Consensus 181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l---P~~~ 256 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL---PVKR 256 (307)
T ss_pred eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC---CCCC
Confidence 6 58888888763 111 1111222333455667788888998776554444 89999977 999999983 4477
Q ss_pred eEEEEEC-CCCcEEEEec
Q 023822 254 TLEASFS-PEGMFVISGR 270 (276)
Q Consensus 254 v~~~~~s-~~g~~l~~~~ 270 (276)
+++++|- |+.+.|+..+
T Consensus 257 ~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 257 PTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CccceEeCCCcCEEEEEe
Confidence 8888885 4555554443
No 332
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.69 E-value=4.8e-05 Score=62.16 Aligned_cols=207 Identities=14% Similarity=0.192 Sum_probs=112.9
Q ss_pred EEEcCCCCEEEEeecC----------C-eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEc
Q 023822 40 MDFHKSSSYLVTASDD----------E-SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 108 (276)
Q Consensus 40 ~~~~~~~~~l~~~~~d----------~-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~ 108 (276)
++.+|.|.-+|....+ . .|.||+. .|+.+..+.-..+.+.++.|..+...+++. . ||.+++||+
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~-~---dG~v~vy~~ 108 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQ-S---DGTVRVYDL 108 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEE-c---CCEEEEEeC
Confidence 4455555555554333 1 5999985 577777776656899999999865555554 4 999999998
Q ss_pred cCCceeeee-------cccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce-eeeeEee-cC-------CC----eeE
Q 023822 109 HDNKYLRYF-------KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRV-QG-------RP----AAA 168 (276)
Q Consensus 109 ~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~-~~-------~~----~~~ 168 (276)
.... ...+ .-....+....+..+| ++.-..++.+.+.+--... ....+.. .. .. ...
T Consensus 109 ~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~ 185 (410)
T PF04841_consen 109 FGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPL 185 (410)
T ss_pred CCce-eechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceE
Confidence 6333 1111 1111222222333345 3333345555444322211 1111100 00 00 011
Q ss_pred ecCCCc-EEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC
Q 023822 169 YDDQGL-VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK 247 (276)
Q Consensus 169 ~~~~~~-~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 247 (276)
++.+.. .+....++.+.+.+-...+. + ...+++..++.||+|+++|.-..+|.+.+.+..-.+.+..+...
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~~-------i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~ 257 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFKQ-------I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD 257 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccccc-------c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC
Confidence 222332 22223345555444332110 1 12357999999999999999999999999987766677666632
Q ss_pred CCCCCceEEEEECCCCc
Q 023822 248 PVSRNSTLEASFSPEGM 264 (276)
Q Consensus 248 ~~~~~~v~~~~~s~~g~ 264 (276)
.......+.|.-+..
T Consensus 258 --~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 258 --SKSPPKQMAWCGNDA 272 (410)
T ss_pred --cCCCCcEEEEECCCc
Confidence 234556677766543
No 333
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.69 E-value=5.1e-06 Score=67.76 Aligned_cols=89 Identities=19% Similarity=0.193 Sum_probs=68.2
Q ss_pred eEEEEccCCceee---eecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEe
Q 023822 103 LRLLSLHDNKYLR---YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA 179 (276)
Q Consensus 103 i~~~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 179 (276)
-.+|+...++..+ +--..+..+.+++++|+...|+.|+.||+|.+||...+........-.+..++|+|+|.+++++
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~ 317 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVG 317 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEE
Confidence 3456655443221 1124678899999999999999999999999999887754444344446689999999999999
Q ss_pred e-CCeEEEEeccc
Q 023822 180 F-GGYIRMFDARK 191 (276)
Q Consensus 180 ~-d~~i~~~d~~~ 191 (276)
+ .|.+.+||+.-
T Consensus 318 s~qGelQ~FD~AL 330 (545)
T PF11768_consen 318 SEQGELQCFDMAL 330 (545)
T ss_pred cCCceEEEEEeec
Confidence 8 59999999865
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=3.2e-06 Score=71.58 Aligned_cols=182 Identities=15% Similarity=0.169 Sum_probs=118.7
Q ss_pred EEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcc-eEEEEeccCCCEEEEeeCCC-----eEEEEeccCc---
Q 023822 83 CFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDR-VVSLSLCSSKDCFISGSLDR-----TVLLWDQRAE--- 153 (276)
Q Consensus 83 ~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~--- 153 (276)
+|++.+..++.|+. +|.|.+++- ..+..+.++.+... |..+....+.++|++.+.|+ .+++||++..
T Consensus 30 c~~s~~~~vvigt~---~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTA---DGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCCCceEEEeec---cccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 56778888999988 898888873 33444666666666 44444444446788777764 4899998743
Q ss_pred ---eeeeeE---------eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcE
Q 023822 154 ---KCQGLL---------RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL 220 (276)
Q Consensus 154 ---~~~~~~---------~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 220 (276)
++.... ...++.+++.+.+-+.+++|. +|.|..+.=.-.+.......-......+|+.+++..+++.
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 233111 123456888999989999998 8999988643222211222223345579999999999987
Q ss_pred EEEeecCCcEEEEECCCCcE-EEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822 221 MLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEGMFVISGRV 271 (276)
Q Consensus 221 l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 271 (276)
++....-..|.+|.+....+ ...+. .++.+.++..+++...-+++++.
T Consensus 186 ~lFv~Tt~~V~~y~l~gr~p~~~~ld---~~G~~lnCss~~~~t~qfIca~~ 234 (933)
T KOG2114|consen 186 VLFVATTEQVMLYSLSGRTPSLKVLD---NNGISLNCSSFSDGTYQFICAGS 234 (933)
T ss_pred eEEEEecceeEEEEecCCCcceeeec---cCCccceeeecCCCCccEEEecC
Confidence 44444556799999874442 23344 57788888888876653444443
No 335
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.63 E-value=5.1e-05 Score=61.34 Aligned_cols=228 Identities=13% Similarity=0.105 Sum_probs=131.0
Q ss_pred cEEEEEEcCCCCEEEEeecCCeEEEEEccCCeee-------------------------------------------eee
Q 023822 36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-------------------------------------------KTI 72 (276)
Q Consensus 36 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-------------------------------------------~~~ 72 (276)
.|+.+.|.++..-|++|...|.|.||.....+.- ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4889999999889999999999999876432111 111
Q ss_pred eeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeee--cc------cCcceEEEEecc-----CC---CEE
Q 023822 73 NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF--KG------HHDRVVSLSLCS-----SK---DCF 136 (276)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~--~~------~~~~i~~~~~~~-----~~---~~l 136 (276)
....++|++++.+ |=.++++|.. +|.+.|.|++....+..- .. ....++++.|.. |+ -.+
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~---~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYE---SGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEET---TSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEec---CCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 2235678888886 6668888888 999999999887766542 22 234677888862 33 378
Q ss_pred EEeeCCCeEEEEeccC---ceeeeeE------eecCCCee-EecC---------------------CCcEEEEeeCCeEE
Q 023822 137 ISGSLDRTVLLWDQRA---EKCQGLL------RVQGRPAA-AYDD---------------------QGLVFAVAFGGYIR 185 (276)
Q Consensus 137 ~~~~~d~~i~iwd~~~---~~~~~~~------~~~~~~~~-~~~~---------------------~~~~l~~~~d~~i~ 185 (276)
++|...|.+.+|.+.- +.....+ ....+..+ .++. -..+++++++..++
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 8999999999998752 1111111 11112111 1211 12367777799999
Q ss_pred EEecccCCCCCeeeeeecCCCCCceEEEE-----CCCCcEEEEeecCCcEEEEECCCCcEEEEeecCC-CCCCceEEEEE
Q 023822 186 MFDARKYEKGPFDIFSVGGDISDANVVKF-----SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-VSRNSTLEASF 259 (276)
Q Consensus 186 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~ 259 (276)
++...+.+. .............+.+ ...+..|++-..+|.|++|.+..-+.+....... .....+....+
T Consensus 239 v~~~~~~k~----~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssi 314 (395)
T PF08596_consen 239 VFKPPKSKG----AHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSI 314 (395)
T ss_dssp EE-TT---E----EEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE
T ss_pred EEeCCCCcc----cceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEE
Confidence 999876543 2222222122233444 2356778888899999999999999988887421 12234556778
Q ss_pred CCCCcEEEEecC
Q 023822 260 SPEGMFVISGRV 271 (276)
Q Consensus 260 s~~g~~l~~~~~ 271 (276)
+++|..++-.+.
T Consensus 315 s~~Gdi~~~~gp 326 (395)
T PF08596_consen 315 SRNGDIFYWTGP 326 (395)
T ss_dssp -TTS-EEEE-SS
T ss_pred CCCCCEEEEeCc
Confidence 899988766554
No 336
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.61 E-value=8.9e-05 Score=58.86 Aligned_cols=214 Identities=11% Similarity=0.076 Sum_probs=121.7
Q ss_pred CeEEEEEccCCeeeeeeeeee-eceEEE---EEecc----CCeEEEeccCC------CC-CceEEEEccCC----ceeee
Q 023822 56 ESIRLYDVTAATCLKTINSKK-YGVDLV---CFTSH----PTTVIYSSKNG------WD-ESLRLLSLHDN----KYLRY 116 (276)
Q Consensus 56 ~~i~iwd~~~~~~~~~~~~~~-~~v~~~---~~~~~----~~~l~~~~~~~------~d-~~i~~~d~~~~----~~~~~ 116 (276)
..|++.|..+.+.+..+.-.. ..+.++ .+..+ ..++++|+.-. .. |.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 358888888887776665332 234433 33322 45677665410 02 89999999884 12222
Q ss_pred e--cccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce-eeeeE-eecCCCeeEecCCCcEEEEee-CCeEEEEeccc
Q 023822 117 F--KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLL-RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARK 191 (276)
Q Consensus 117 ~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~-~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~ 191 (276)
+ ....++|++++-- ++. |+.+. ++.|.+|++...+ ....- .............+.+++++. ...+.++..+.
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence 1 2357888888765 444 44444 5899999999887 33332 334445555555566777776 67777775554
Q ss_pred CCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCC-------Cc-EEE-EeecCCCCCCceEEE---EE
Q 023822 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-------GT-LLS-TYNVKPVSRNSTLEA---SF 259 (276)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------~~-~~~-~~~~~~~~~~~v~~~---~~ 259 (276)
.. ..+...........++++.|-++++.++.+..+|.+.++.... +. .+. ....+ ....|+++ ++
T Consensus 159 ~~-~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~--lg~~v~~~~~~~l 235 (321)
T PF03178_consen 159 EN-NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH--LGDIVNSFRRGSL 235 (321)
T ss_dssp TT-E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE---SS-EEEEEE--S
T ss_pred cC-CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE--CCCccceEEEEEe
Confidence 11 1233344444556788888886767899999999999998652 22 222 22211 45667777 55
Q ss_pred CCC--C------cEEEEecCCCCC
Q 023822 260 SPE--G------MFVISGRVSPFS 275 (276)
Q Consensus 260 s~~--g------~~l~~~~~dg~v 275 (276)
.|. + ..++.++.+|.+
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~I 259 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSI 259 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-E
T ss_pred eecCCCCcccccceEEEEecCCEE
Confidence 552 2 247777777753
No 337
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.60 E-value=2.7e-06 Score=70.50 Aligned_cols=117 Identities=17% Similarity=0.165 Sum_probs=89.3
Q ss_pred CCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeee-eeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC
Q 023822 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI-NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN 111 (276)
Q Consensus 33 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~ 111 (276)
|...|.--++...+++++.|+.-|.+++|+-..++....- .+..+.+..+..+++..+++.++. .|.|.++-+..+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~---~g~V~v~ql~~~ 108 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTA---SGRVSVFQLNKE 108 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcC---CceEEeehhhcc
Confidence 4455666667778899999999999999997665543222 224456677788888888888887 899999988764
Q ss_pred ceeee-----e-cccCcceEEEEeccCCCEEEEeeCCCeEEEEeccC
Q 023822 112 KYLRY-----F-KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA 152 (276)
Q Consensus 112 ~~~~~-----~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 152 (276)
.+... . +.|...|++++|++++..+++|...|+|.+-.+..
T Consensus 109 ~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 109 LPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 33211 1 23788999999999999999999999999888877
No 338
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=0.00021 Score=58.02 Aligned_cols=230 Identities=13% Similarity=0.110 Sum_probs=148.8
Q ss_pred cEEEEEEcCCCCEEEEee-cCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822 36 RISSMDFHKSSSYLVTAS-DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL 114 (276)
Q Consensus 36 ~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~ 114 (276)
....+...+++..+.... ....+...+...................++.++.+..+.....+ +..|.+.|..+.+..
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~--~~~v~vid~~~~~~~ 109 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGD--SNTVSVIDTATNTVL 109 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCC--CCeEEEEcCccccee
Confidence 345577788775544333 22245555544222222111111345578888888866666552 789999998877776
Q ss_pred eeecccCcceEEEEeccCCCEEEEeeC---CCeEEEEeccCceeeeeEeec-CCCeeEecCCCcEEEEee--CCeEEEEe
Q 023822 115 RYFKGHHDRVVSLSLCSSKDCFISGSL---DRTVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQGLVFAVAF--GGYIRMFD 188 (276)
Q Consensus 115 ~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~--d~~i~~~d 188 (276)
.....-. ....++++|+++.+..+.. ++++.+.|-.+.+........ ....++++|++..+.... ++.|.+.|
T Consensus 110 ~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~ 188 (381)
T COG3391 110 GSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVID 188 (381)
T ss_pred eEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEe
Confidence 6654333 5678999999986666655 688999999988888776332 236899999998666665 79999999
Q ss_pred cccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC---CcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcE
Q 023822 189 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF 265 (276)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 265 (276)
........-..............+.++|+|+++++.... +.+...|..++.....-... +.. ....+..+|+|++
T Consensus 189 ~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~~ 266 (381)
T COG3391 189 TSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGKA 266 (381)
T ss_pred CCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc-ccC-CCCceeECCCCCE
Confidence 776432100000011222345679999999977665443 58999999888887762211 122 5667899999998
Q ss_pred EEEec
Q 023822 266 VISGR 270 (276)
Q Consensus 266 l~~~~ 270 (276)
+.+..
T Consensus 267 ~yv~~ 271 (381)
T COG3391 267 AYVAN 271 (381)
T ss_pred EEEEe
Confidence 87763
No 339
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.57 E-value=2.2e-05 Score=64.33 Aligned_cols=166 Identities=11% Similarity=0.108 Sum_probs=91.7
Q ss_pred eeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce
Q 023822 75 KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK 154 (276)
Q Consensus 75 ~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 154 (276)
.......+.++|+++.+++++ +|.-.++.....+... .+.-....|.+. +.+|+-...++|.++.--+.+
T Consensus 31 ~~~~p~~ls~npngr~v~V~g----~geY~iyt~~~~r~k~-----~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCG----DGEYEIYTALAWRNKA-----FGSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEE----TTEEEEEETTTTEEEE-----EEE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-
T ss_pred CCcCCeeEEECCCCCEEEEEc----CCEEEEEEccCCcccc-----cCceeEEEEecC-ccEEEEECCCeEEEEEcCccc
Confidence 334578899999999999976 8888888843333221 234466889884 457777778899996322222
Q ss_pred eeeeEeecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEE
Q 023822 155 CQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234 (276)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 234 (276)
....+.... ..-.+-+ |.+|....++.|.+||+.+.+. +...... +|..+.|+++|.+++..+.+ .+.+++
T Consensus 101 ~~k~i~~~~-~~~~If~-G~LL~~~~~~~i~~yDw~~~~~----i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 101 VVKSIKLPF-SVEKIFG-GNLLGVKSSDFICFYDWETGKL----IRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp TT-----SS--EEEEE--SSSEEEEETTEEEEE-TTT--E----EEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred cceEEcCCc-ccceEEc-CcEEEEECCCCEEEEEhhHcce----eeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 222332221 1112222 8888888888999999998653 4444332 48999999999999988766 677777
Q ss_pred CCCC-----------cEEEEeecCCCCCCceEEEEECCC
Q 023822 235 SFRG-----------TLLSTYNVKPVSRNSTLEASFSPE 262 (276)
Q Consensus 235 ~~~~-----------~~~~~~~~~~~~~~~v~~~~~s~~ 262 (276)
.... ..+..+. .....|.+.+|..|
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~---E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIH---EISERIKSGCWVED 207 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEE---EE-S--SEEEEETT
T ss_pred ecchhcccccccCchhceEEEE---EecceeEEEEEEcC
Confidence 4332 0222332 12467778888766
No 340
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.55 E-value=4.7e-05 Score=63.78 Aligned_cols=218 Identities=10% Similarity=0.048 Sum_probs=123.8
Q ss_pred CCCEEEEeec-CCeEEEEEccCCeeeeeeeee-eeceEEEEE-------------------eccCCeEEEeccCCCCCce
Q 023822 45 SSSYLVTASD-DESIRLYDVTAATCLKTINSK-KYGVDLVCF-------------------TSHPTTVIYSSKNGWDESL 103 (276)
Q Consensus 45 ~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~-------------------~~~~~~l~~~~~~~~d~~i 103 (276)
||++|..-.. +..|-.-+++..++-+.+... ...+..+++ .|+++.+.... .+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~--ey~~~v 217 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPK--KYRSLF 217 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeeccc--ceeEEE
Confidence 6778877653 455666666655554443321 122333333 33444433222 235677
Q ss_pred EEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCC----CeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEe
Q 023822 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD----RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA 179 (276)
Q Consensus 104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 179 (276)
.+.|.++.+...++.- .+....++++|+++++++.+.+ .++..-+.........+.... ...+.++|++...
T Consensus 218 SvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--iea~vkdGK~~~V- 293 (635)
T PRK02888 218 TAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--IEEAVKAGKFKTI- 293 (635)
T ss_pred EEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--HHHhhhCCCEEEE-
Confidence 7888887777666653 2344678899999988887642 233333333322222221111 1234456766655
Q ss_pred eCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee-cCCcEEEEECCCCcE------------EEEeec
Q 023822 180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTL------------LSTYNV 246 (276)
Q Consensus 180 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~------------~~~~~~ 246 (276)
.++.|.+.|.++...........-.-......+.++|||+++++++ .+..|.|+|+.+.+. ..+..
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve- 372 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE- 372 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec-
Confidence 3678999998871100001222212334677899999999987765 588999999987553 34443
Q ss_pred CCCCCCceEEEEECCCCcEEEEecCC
Q 023822 247 KPVSRNSTLEASFSPEGMFVISGRVS 272 (276)
Q Consensus 247 ~~~~~~~v~~~~~s~~g~~l~~~~~d 272 (276)
........+|.++|....+--.|
T Consensus 373 ---vGlGPLHTaFDg~G~aytslf~d 395 (635)
T PRK02888 373 ---LGLGPLHTAFDGRGNAYTTLFLD 395 (635)
T ss_pred ---cCCCcceEEECCCCCEEEeEeec
Confidence 23344567899998765554443
No 341
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.53 E-value=7.2e-07 Score=72.52 Aligned_cols=75 Identities=17% Similarity=0.248 Sum_probs=63.3
Q ss_pred cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC
Q 023822 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN 111 (276)
Q Consensus 32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~ 111 (276)
.....|.|++++|+...|+.|+.||.|.+||...+.. .+....-..+.++|+|++..+++++. .|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~---qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSE---QGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcC---CceEEEEEeecC
Confidence 4678899999999999999999999999999866532 23334456889999999999999998 899999998644
No 342
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.51 E-value=0.00025 Score=55.17 Aligned_cols=227 Identities=11% Similarity=0.060 Sum_probs=138.1
Q ss_pred EEEEcCCCCEEEEee----------cCCeEEEEEccCCeeeeeeeeeee-------ceEEEEEeccCCeEEEeccCCCCC
Q 023822 39 SMDFHKSSSYLVTAS----------DDESIRLYDVTAATCLKTINSKKY-------GVDLVCFTSHPTTVIYSSKNGWDE 101 (276)
Q Consensus 39 ~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~~~~d~ 101 (276)
.+..+|+++.+++++ ..-.|.+||..+-.+..++..... ....++++.+++++++.... ...
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T-Pa~ 118 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT-PAT 118 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES-SSE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccC-CCC
Confidence 366789999888754 234689999999888776654332 22346788888888776541 267
Q ss_pred ceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEecc-CceeeeeE----eecC---CCeeEec-CC
Q 023822 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR-AEKCQGLL----RVQG---RPAAAYD-DQ 172 (276)
Q Consensus 102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~----~~~~---~~~~~~~-~~ 172 (276)
.|.+.|+..++.+..+.. ++. ..+ +-..++-|.+.|.||++.-..+. .++..... .... ...-++. ..
T Consensus 119 SVtVVDl~~~kvv~ei~~-PGC-~~i-yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~ 195 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDT-PGC-WLI-YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG 195 (342)
T ss_dssp EEEEEETTTTEEEEEEEG-TSE-EEE-EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred eEEEEECCCCceeeeecC-CCE-EEE-EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence 788999998888877652 222 111 21122458888899999988887 34433221 1111 1122233 34
Q ss_pred CcEEEEeeCCeEEEEecccCCCCCeeeeeecC--------CCCCceEEEECCCCcEEEEeec---CC-------cEEEEE
Q 023822 173 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGG--------DISDANVVKFSNDGRLMLLTTM---EG-------HIHVLD 234 (276)
Q Consensus 173 ~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~---dg-------~i~i~d 234 (276)
++++..+.+|.|+-.|+............+.. .++...-+++++..+.|++.-. ++ .|-++|
T Consensus 196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D 275 (342)
T PF06433_consen 196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD 275 (342)
T ss_dssp TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence 56777888999999998775422222222110 1223445788876555554321 22 488899
Q ss_pred CCCCcEEEEeecCCCCCCceEEEEECCCCc-EEEEe-cCCC
Q 023822 235 SFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISG-RVSP 273 (276)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~-~~dg 273 (276)
+.+++.+.++. ...++.+++.+.+.+ +|++. ..++
T Consensus 276 ~~t~krv~Ri~----l~~~~~Si~Vsqd~~P~L~~~~~~~~ 312 (342)
T PF06433_consen 276 LKTHKRVARIP----LEHPIDSIAVSQDDKPLLYALSAGDG 312 (342)
T ss_dssp TTTTEEEEEEE----EEEEESEEEEESSSS-EEEEEETTTT
T ss_pred CCCCeEEEEEe----CCCccceEEEccCCCcEEEEEcCCCC
Confidence 99999999998 456788999999875 55443 3344
No 343
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.45 E-value=3e-05 Score=67.12 Aligned_cols=132 Identities=10% Similarity=0.078 Sum_probs=93.3
Q ss_pred ecCCeEEEEEccCCeeeeeeeeeeec-eEEEEEecc-------CCeEEEeccCCCCCceEEEEccCCc--eeee-e--cc
Q 023822 53 SDDESIRLYDVTAATCLKTINSKKYG-VDLVCFTSH-------PTTVIYSSKNGWDESLRLLSLHDNK--YLRY-F--KG 119 (276)
Q Consensus 53 ~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~-------~~~l~~~~~~~~d~~i~~~d~~~~~--~~~~-~--~~ 119 (276)
.....|+-.|++.|+.+..+..+... |.. +.|+ ....+.|-. +..+..||.+-.. .+.. . ..
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls---~n~lfriDpR~~~~k~v~~~~k~Y~ 575 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLS---DNSLFRIDPRLSGNKLVDSQSKQYS 575 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEEC---CCceEEeccCCCCCceeeccccccc
Confidence 34578999999999999999887643 444 4443 233445555 8999999987542 2211 1 12
Q ss_pred cCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEeeCCeEEEEecc
Q 023822 120 HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAFGGYIRMFDAR 190 (276)
Q Consensus 120 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~ 190 (276)
......|++-..+| +||+|+.+|.|++||--..+....+ -+.++..+..+.||+++++.++..+.+++..
T Consensus 576 ~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 576 SKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred cCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 34457777776666 6999999999999994332222222 3567889999999999999999999999864
No 344
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=3.8e-06 Score=65.17 Aligned_cols=162 Identities=12% Similarity=0.145 Sum_probs=103.0
Q ss_pred eEEEEccCCceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCC-cEEEEe
Q 023822 103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQG-LVFAVA 179 (276)
Q Consensus 103 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~-~~l~~~ 179 (276)
+++.+..+.+..+.+..+...|.+++|+|..+ ++..++.+.+|++.|+++......+ ....+.+++|+-+. +++.+|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence 67777666666777778889999999999877 7889999999999999999888777 34567789998776 455555
Q ss_pred e-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEE------CCCCcEEEEeecCCcEEEEECC--CCcEEEEeecCCCC
Q 023822 180 F-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKF------SNDGRLMLLTTMEGHIHVLDSF--RGTLLSTYNVKPVS 250 (276)
Q Consensus 180 ~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~ 250 (276)
. +|.|.+||++..+.... ...-.....+|..++. .+.|.+|+..+.+ +..|++. .+......+. +.
T Consensus 255 l~nG~VlvyD~R~~~~~~~-e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel--e~ 329 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPEGPLM-ELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL--EP 329 (463)
T ss_pred ccCceEEEEEccCCCchHh-hhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc--CC
Confidence 5 79999999998664221 1111112234444332 2334455544443 4566543 2222222221 23
Q ss_pred CCceEEEEECCCC-cEEEEe
Q 023822 251 RNSTLEASFSPEG-MFVISG 269 (276)
Q Consensus 251 ~~~v~~~~~s~~g-~~l~~~ 269 (276)
.+...+++..+-. ..|++.
T Consensus 330 pG~cismqy~~~snh~l~ty 349 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTY 349 (463)
T ss_pred CcceeeeeecCccceEEEEe
Confidence 5566666666633 334443
No 345
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.42 E-value=0.00038 Score=53.98 Aligned_cols=139 Identities=11% Similarity=0.108 Sum_probs=85.2
Q ss_pred CCCEEEEeecCCeEEEEEccCC-eeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeee------
Q 023822 45 SSSYLVTASDDESIRLYDVTAA-TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF------ 117 (276)
Q Consensus 45 ~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~------ 117 (276)
.++.|+.|+.+| +.+++.... +...... ...|..+...++-+.+++-+ |+.+.++++..-.....-
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs----d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS----DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc----CCccEEEEchhhcccccccccccc
Confidence 578899999998 899998333 3333222 22399999999888888887 899999998765433311
Q ss_pred --------cccCcceEEEE--eccCCCEEEEeeCCCeEEEEeccCc-----eeeeeEe-ecCCCeeEecCCCcEEEEeeC
Q 023822 118 --------KGHHDRVVSLS--LCSSKDCFISGSLDRTVLLWDQRAE-----KCQGLLR-VQGRPAAAYDDQGLVFAVAFG 181 (276)
Q Consensus 118 --------~~~~~~i~~~~--~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~-~~~~~~~~~~~~~~~l~~~~d 181 (276)
......+...+ -...+...+......+|.+|..... +..+.+. ...+..+.|. +..++.+..
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeC
Confidence 11222344444 1123333333444558988887653 3444442 3445567777 555666656
Q ss_pred CeEEEEecccC
Q 023822 182 GYIRMFDARKY 192 (276)
Q Consensus 182 ~~i~~~d~~~~ 192 (276)
+...+.|+.++
T Consensus 157 ~~f~~idl~~~ 167 (275)
T PF00780_consen 157 KGFYLIDLNTG 167 (275)
T ss_pred CceEEEecCCC
Confidence 66777777754
No 346
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.42 E-value=0.0003 Score=52.09 Aligned_cols=141 Identities=12% Similarity=0.092 Sum_probs=96.0
Q ss_pred CCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceE
Q 023822 46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV 125 (276)
Q Consensus 46 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~ 125 (276)
..+++.|+..+.+.--|..+|+...+-.. ..++.+-+.- -+++++.+.. .|.+++.+..++...+.+..-..-=.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy---~g~lYfl~~~tGs~~w~f~~~~~vk~ 97 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCY---SGGLYFLCVKTGSQIWNFVILETVKV 97 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEc---cCcEEEEEecchhheeeeeehhhhcc
Confidence 35778888889898889988886644321 1123222222 4677889988 99999999999987777654332222
Q ss_pred EEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCC--CeeEecC-CCcEEEEeeCCeEEEEeccc
Q 023822 126 SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDD-QGLVFAVAFGGYIRMFDARK 191 (276)
Q Consensus 126 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~-~~~~l~~~~d~~i~~~d~~~ 191 (276)
.....+++..+..++.|++.+..|.++..++...+..+. ..-++.| ++.++++...|.+.--....
T Consensus 98 ~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 98 RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCC
Confidence 344567899999999999999999999988877643332 2334555 55666666666655544443
No 347
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.40 E-value=0.00041 Score=58.32 Aligned_cols=185 Identities=16% Similarity=0.223 Sum_probs=111.4
Q ss_pred cCCeEEEEEccCCeeeeeeeeeeec--------------------e-EEEEEeccCCeEEEeccCC--------------
Q 023822 54 DDESIRLYDVTAATCLKTINSKKYG--------------------V-DLVCFTSHPTTVIYSSKNG-------------- 98 (276)
Q Consensus 54 ~d~~i~iwd~~~~~~~~~~~~~~~~--------------------v-~~~~~~~~~~~l~~~~~~~-------------- 98 (276)
.++.+..+|.++|+.+-.+...... + ...++.+.+..++++..++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 3678899999999887766542110 1 1234444566677776421
Q ss_pred -CCCceEEEEccCCceeeeecccCcceE------EEEec----cCCC---EEEEeeCCCeEEEEeccCceeeeeEeecCC
Q 023822 99 -WDESLRLLSLHDNKYLRYFKGHHDRVV------SLSLC----SSKD---CFISGSLDRTVLLWDQRAEKCQGLLRVQGR 164 (276)
Q Consensus 99 -~d~~i~~~d~~~~~~~~~~~~~~~~i~------~~~~~----~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 164 (276)
+++.|.-+|..+++....++.-..... ...+. -++. .++.++.+|.+...|.++++.+-..... .
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-~ 331 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-E 331 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-c
Confidence 123799999999998887642111111 01111 1333 5778888999999999999887665332 1
Q ss_pred CeeEecCCCcEEEEe------------------eCCeEEEEecccCCCCCeeeeeecCC--C------CCc--eEEEECC
Q 023822 165 PAAAYDDQGLVFAVA------------------FGGYIRMFDARKYEKGPFDIFSVGGD--I------SDA--NVVKFSN 216 (276)
Q Consensus 165 ~~~~~~~~~~~l~~~------------------~d~~i~~~d~~~~~~~~~~~~~~~~~--~------~~i--~~~~~~~ 216 (276)
..++.+| +.+++.. .++.+.-.|..+++. +...... . .+. ..++.
T Consensus 332 ~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~----~W~~~~~~~~~~~~~g~~~~~~~~~~-- 404 (488)
T cd00216 332 QPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKV----VWEKREGTIRDSWNIGFPHWGGSLAT-- 404 (488)
T ss_pred cccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcE----eeEeeCCccccccccCCcccCcceEe--
Confidence 1233444 3333321 246788888877664 2222111 0 111 11222
Q ss_pred CCcEEEEeecCCcEEEEECCCCcEEEEeec
Q 023822 217 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNV 246 (276)
Q Consensus 217 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 246 (276)
.+..|++++.||.|+.+|.++|+.+-+++.
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 456788899999999999999999988873
No 348
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=98.37 E-value=0.00069 Score=54.32 Aligned_cols=226 Identities=13% Similarity=0.096 Sum_probs=106.2
Q ss_pred CCCEEEEee-cCCeEEEEEccC----Ceeeeeeee---ee----eceEEEEEeccCCeEEEeccC---CCCCceEEEEcc
Q 023822 45 SSSYLVTAS-DDESIRLYDVTA----ATCLKTINS---KK----YGVDLVCFTSHPTTVIYSSKN---GWDESLRLLSLH 109 (276)
Q Consensus 45 ~~~~l~~~~-~d~~i~iwd~~~----~~~~~~~~~---~~----~~v~~~~~~~~~~~l~~~~~~---~~d~~i~~~d~~ 109 (276)
+.++|+..+ ..+.|+|.|+.+ .+..+.++. +. .....+..-|+++.++++-.+ +.-|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 445676665 778999999873 344444432 11 223334445678777775331 124678888888
Q ss_pred CCceeeeeccc---CcceEEEEeccCCCEEEEeeC--------------------CCeEEEEeccCceeeeeEeecC---
Q 023822 110 DNKYLRYFKGH---HDRVVSLSLCSSKDCFISGSL--------------------DRTVLLWDQRAEKCQGLLRVQG--- 163 (276)
Q Consensus 110 ~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~--------------------d~~i~iwd~~~~~~~~~~~~~~--- 163 (276)
+.+....+... ...-..+.|.|..+.++|... ..++.+||+.+.+.++.+....
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 77776666532 233467778888888877652 3589999999999999985442
Q ss_pred -CCeeEe--cCCCcEEEEee--CCeEEEEec-ccCCCCCeeeeeecC-----------------CCCCceEEEECCCCcE
Q 023822 164 -RPAAAY--DDQGLVFAVAF--GGYIRMFDA-RKYEKGPFDIFSVGG-----------------DISDANVVKFSNDGRL 220 (276)
Q Consensus 164 -~~~~~~--~~~~~~l~~~~--d~~i~~~d~-~~~~~~~~~~~~~~~-----------------~~~~i~~~~~~~~~~~ 220 (276)
.-.+.| .|+...-.++. ..+|..|-- +.++-....+..+.. -..-|+.|.+|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 224444 44443333333 566665544 222100011111111 0235789999999999
Q ss_pred EEEee-cCCcEEEEECCCCc---EEEEeecC-------------CCCCCceEEEEECCCCcEEEEec
Q 023822 221 MLLTT-MEGHIHVLDSFRGT---LLSTYNVK-------------PVSRNSTLEASFSPEGMFVISGR 270 (276)
Q Consensus 221 l~~~~-~dg~i~i~d~~~~~---~~~~~~~~-------------~~~~~~v~~~~~s~~g~~l~~~~ 270 (276)
|+... .+|.|+.||+.+.. +..++... ....+...-+..|-||++|+..+
T Consensus 326 LYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 98876 68999999997643 23222210 01123457788999999887654
No 349
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.36 E-value=0.00093 Score=55.13 Aligned_cols=224 Identities=13% Similarity=0.094 Sum_probs=121.7
Q ss_pred EEEEEEcCCCCEEEEe-ecCC----eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCC--------CCce
Q 023822 37 ISSMDFHKSSSYLVTA-SDDE----SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW--------DESL 103 (276)
Q Consensus 37 v~~~~~~~~~~~l~~~-~~d~----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~--------d~~i 103 (276)
+....++|+++++|.+ +..| .++++|+++++.+...-... ....+.|.++++.++....... ...|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4467899999998855 3333 69999999997765432211 2233999999988877765321 3347
Q ss_pred EEEEccCCcee--eeecccCcc--eEEEEeccCCCEEEEeeC---C-CeEEEEeccCc----eeeeeE-e-ecCCCeeEe
Q 023822 104 RLLSLHDNKYL--RYFKGHHDR--VVSLSLCSSKDCFISGSL---D-RTVLLWDQRAE----KCQGLL-R-VQGRPAAAY 169 (276)
Q Consensus 104 ~~~d~~~~~~~--~~~~~~~~~--i~~~~~~~~~~~l~~~~~---d-~~i~iwd~~~~----~~~~~~-~-~~~~~~~~~ 169 (276)
+.|.+.+.... ..+...... ...+..++++++++.... + ..+.+.|+... .....+ . ........-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 78887766432 334333332 567888999997665433 2 35788888764 222222 2 222323233
Q ss_pred cCCCcEEEEee----CCeEEEEecccCCCCCeeeeeecCCCC--CceEEEECCCCcEEEE-eecCC--cEEEEECCCCcE
Q 023822 170 DDQGLVFAVAF----GGYIRMFDARKYEKGPFDIFSVGGDIS--DANVVKFSNDGRLMLL-TTMEG--HIHVLDSFRGTL 240 (276)
Q Consensus 170 ~~~~~~l~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~-~~~dg--~i~i~d~~~~~~ 240 (276)
+..+.+++.+. .+.|...++.......... .+..+.. .+..+.. .+.+|+. ...++ .|+++++..+..
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~-~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWT-VLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEE-EEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEeccccccccccee-EEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcE
Confidence 33555555554 3677777877654311111 2223333 3444443 3444444 44444 588999874555
Q ss_pred EEEeecCCCCCCceEEEEECCCCcEE
Q 023822 241 LSTYNVKPVSRNSTLEASFSPEGMFV 266 (276)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~s~~g~~l 266 (276)
...+... ..+.|..+...+++..+
T Consensus 362 ~~~~~~p--~~g~v~~~~~~~~~~~~ 385 (414)
T PF02897_consen 362 SREIPLP--EAGSVSGVSGDFDSDEL 385 (414)
T ss_dssp EEEEESS--SSSEEEEEES-TT-SEE
T ss_pred EeeecCC--cceEEeccCCCCCCCEE
Confidence 5555432 34556666666666544
No 350
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.34 E-value=0.00056 Score=54.25 Aligned_cols=223 Identities=11% Similarity=0.058 Sum_probs=113.1
Q ss_pred EEcCCCCEEEEeec-C--CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeee
Q 023822 41 DFHKSSSYLVTASD-D--ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF 117 (276)
Q Consensus 41 ~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~ 117 (276)
+|.++|+.|+.++. | ..+.+.|+++++..+.-.+.........++++.+.++.... ...|+-.|+.+.+....+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~---~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN---GRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET---TTEEEEEETTT--EEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC---CCeEEEEECCcCcEEEEE
Confidence 56778987766554 4 46778888888766655543333446777888888876654 678999999998876666
Q ss_pred cccCcceEEEEec--cCCCEEEEeeC----------------------CCeEEEEeccCceeeeeEee-cCCCeeEecCC
Q 023822 118 KGHHDRVVSLSLC--SSKDCFISGSL----------------------DRTVLLWDQRAEKCQGLLRV-QGRPAAAYDDQ 172 (276)
Q Consensus 118 ~~~~~~i~~~~~~--~~~~~l~~~~~----------------------d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~ 172 (276)
......+-...|. .++..++-.-. ...|.--|+.+++....+.. .-...+.++|.
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT 198 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence 6566666555664 34554432211 23466667777765554432 22457888885
Q ss_pred C-cEEEEeeC----C-eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee-----cCCcEEEEECCCCcEE
Q 023822 173 G-LVFAVAFG----G-YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-----MEGHIHVLDSFRGTLL 241 (276)
Q Consensus 173 ~-~~l~~~~d----~-~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~ 241 (276)
. .+++.|-+ . .-++|-++........+... .....+..=-|.|||..|..-+ .+..|.-+|..+++..
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~ 277 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR 277 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence 5 55565552 2 23667665533322222221 1122344557999998765532 3446778888888765
Q ss_pred EEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822 242 STYNVKPVSRNSTLEASFSPEGMFVISGRVS 272 (276)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 272 (276)
..... .+...+--++||++++-=+.|
T Consensus 278 ~~~~~-----p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 278 RLMEM-----PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEEE------SEEEEEE-TTSSEEEEEE--
T ss_pred EEEeC-----CceeeeEEcCCCCEEEecCCC
Confidence 43331 234456678999887664443
No 351
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.32 E-value=2.5e-05 Score=67.59 Aligned_cols=133 Identities=11% Similarity=0.121 Sum_probs=90.3
Q ss_pred CEEEEe-eCCCeEEEEeccCceeeeeEeecC-CCeeEecCC--------CcEEEEeeCCeEEEEecccCCCCCee-eeee
Q 023822 134 DCFISG-SLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQ--------GLVFAVAFGGYIRMFDARKYEKGPFD-IFSV 202 (276)
Q Consensus 134 ~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~--------~~~l~~~~d~~i~~~d~~~~~~~~~~-~~~~ 202 (276)
++|+.- .....|+-.|++.++.+..+..+. ++...+.|+ ...+++-+++.+..||.|-....... ....
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 444433 345789999999999999885443 334555553 24566666899999999975421110 0111
Q ss_pred cCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcE-EEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822 203 GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEGMFVISGRV 271 (276)
Q Consensus 203 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 271 (276)
.......+|++-+.+| +||+|+.+|.||+||- .|+. ...+. +...+|..|..+.||+||++.+.
T Consensus 574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp---~lG~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALP---GLGDPIIGIDVTADGKWILATCK 638 (794)
T ss_pred cccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCC---CCCCCeeEEEecCCCcEEEEeec
Confidence 1234567888888887 4999999999999994 4433 22233 67899999999999999876554
No 352
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.23 E-value=3.8e-06 Score=43.12 Aligned_cols=38 Identities=34% Similarity=0.639 Sum_probs=33.6
Q ss_pred ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEE
Q 023822 25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYD 62 (276)
Q Consensus 25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 62 (276)
+....+..|...|.++.|+++++.+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566778999999999999999999999999999996
No 353
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.22 E-value=0.00041 Score=59.20 Aligned_cols=189 Identities=12% Similarity=0.012 Sum_probs=104.7
Q ss_pred eceEEEEEeccCCeEEEecc-----CCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCC---------
Q 023822 77 YGVDLVCFTSHPTTVIYSSK-----NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD--------- 142 (276)
Q Consensus 77 ~~v~~~~~~~~~~~l~~~~~-----~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------- 142 (276)
..+...+++|+++.++.... ......|.+++.. +.. ..+.. ......-.|+|+|+.+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 35778899999999887762 1113356666642 222 33321 2237788999998877766532
Q ss_pred ---CeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeee---eeecC-CCCCceEEEEC
Q 023822 143 ---RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDI---FSVGG-DISDANVVKFS 215 (276)
Q Consensus 143 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~---~~~~~-~~~~i~~~~~~ 215 (276)
+.+.+.+++.+.... -....+..+.|+|||..++.-.+++|++--+.........+ ..+.. ....+.++.|.
T Consensus 427 ~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~ 505 (591)
T PRK13616 427 PATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR 505 (591)
T ss_pred CCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence 233333444433322 11346889999999998888778888884333221111111 11222 22336889999
Q ss_pred CCCcEEEEeecCCcEEEEECC-CCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822 216 NDGRLMLLTTMEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP 273 (276)
Q Consensus 216 ~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 273 (276)
+++.++ ++..++.-.+|.+. .|.....+.. .....++.+++=+++ .++....+|
T Consensus 506 ~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~-~n~~~~v~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 506 TGDSLV-VGRSDPEHPVWYVNLDGSNSDALPS-RNLSAPVVAVAASPS--TVYVTDARA 560 (591)
T ss_pred cCCEEE-EEecCCCCceEEEecCCccccccCC-CCccCceEEEecCCc--eEEEEcCCc
Confidence 999854 55554444455433 2332222121 013566777777763 344545554
No 354
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.20 E-value=2.5e-05 Score=65.07 Aligned_cols=118 Identities=13% Similarity=0.171 Sum_probs=88.3
Q ss_pred cCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe--ec-CCCeeEecCCCcEEEEee-CCeEEEEecccCCCC
Q 023822 120 HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--VQ-GRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKG 195 (276)
Q Consensus 120 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~ 195 (276)
+...+.--+++..+++++.|+.-|.+++|+-..++...... .. .+....+++...++|+++ .|.|.++-+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 34455555667788999999999999999977666544432 22 234567788888888888 689999988874443
Q ss_pred Ceeeeee--cCCCCCceEEEECCCCcEEEEeecCCcEEEEECCC
Q 023822 196 PFDIFSV--GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR 237 (276)
Q Consensus 196 ~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 237 (276)
....... ..|...|++++|++++..+++|...|.|..-.+.+
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 3333322 23578899999999999999999999999988776
No 355
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.20 E-value=0.00029 Score=45.28 Aligned_cols=100 Identities=17% Similarity=0.251 Sum_probs=66.6
Q ss_pred EEEEEEcC---CC-CEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc
Q 023822 37 ISSMDFHK---SS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 112 (276)
Q Consensus 37 v~~~~~~~---~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~ 112 (276)
|++|++.. +| +.|++|+.|..|++|+- .+.+.++... ..|..+.-... ..++.+.. +|+|-+|+-. .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~---NGTVGvY~~~--~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSLGG-GRFAYALA---NGTVGVYDRS--Q 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEcCC-CEEEEEec---CCEEEEEeCc--c
Confidence 56677654 32 57999999999999984 4566666544 36777776655 56777777 9999999753 3
Q ss_pred eeeeecccCcceEEEEecc-C--CC-EEEEeeCCCeEE
Q 023822 113 YLRYFKGHHDRVVSLSLCS-S--KD-CFISGSLDRTVL 146 (276)
Q Consensus 113 ~~~~~~~~~~~i~~~~~~~-~--~~-~l~~~~~d~~i~ 146 (276)
.+...+.. ..+.++++.. + |. .|++|-.+|.|-
T Consensus 73 RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 RLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 34444432 3355555443 3 32 688888888764
No 356
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1.4e-05 Score=65.76 Aligned_cols=90 Identities=13% Similarity=0.078 Sum_probs=76.1
Q ss_pred eceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceE-EEEeccCCCEEEEeeCCCeEEEEeccCcee
Q 023822 77 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV-SLSLCSSKDCFISGSLDRTVLLWDQRAEKC 155 (276)
Q Consensus 77 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 155 (276)
..+.-+.|+|.-..+|.+.. +|.|.+..++ .+.+.++..|...++ +++|.|||+.|+.|-.||+|++.|..++..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~---~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTE---KGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCccchhheecc---CCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 35788999999999999998 9999999988 677788887777777 999999999999999999999999999887
Q ss_pred eeeE---eecCCCeeEec
Q 023822 156 QGLL---RVQGRPAAAYD 170 (276)
Q Consensus 156 ~~~~---~~~~~~~~~~~ 170 (276)
+... ....+..+.|+
T Consensus 97 l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWD 114 (665)
T ss_pred eeccccccccchheeecc
Confidence 7663 34445566665
No 357
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.18 E-value=0.0012 Score=49.00 Aligned_cols=103 Identities=10% Similarity=0.001 Sum_probs=72.4
Q ss_pred CCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceE
Q 023822 46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV 125 (276)
Q Consensus 46 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~ 125 (276)
|++++.|+..|.+++.+.++|.....+.....--......+++..+..++. |+..+..|..+...+...+...+...
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgsh---d~~~yalD~~~~~cVykskcgG~~f~ 139 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSH---DGNFYALDPKTYGCVYKSKCGGGTFV 139 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecC---CCcEEEecccccceEEecccCCceec
Confidence 567889999999999999999877766544322223345568889999988 99999999999988888775555555
Q ss_pred EEEeccCCCEEEEeeCCCeEEEEecc
Q 023822 126 SLSLCSSKDCFISGSLDRTVLLWDQR 151 (276)
Q Consensus 126 ~~~~~~~~~~l~~~~~d~~i~iwd~~ 151 (276)
+-+..|-...|..+...|.+.--..+
T Consensus 140 sP~i~~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 140 SPVIAPGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred cceecCCCceEEEEeccceEEEEccC
Confidence 55666633344445555655444433
No 358
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.14 E-value=0.0022 Score=50.94 Aligned_cols=180 Identities=19% Similarity=0.173 Sum_probs=99.7
Q ss_pred CCEEEEeec----------CCeEEEEEccCC----eeeeee--eeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEcc
Q 023822 46 SSYLVTASD----------DESIRLYDVTAA----TCLKTI--NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH 109 (276)
Q Consensus 46 ~~~l~~~~~----------d~~i~iwd~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~ 109 (276)
..+|+.|.. .|.|.++++... ..+..+ ...+++|.+++-. +.+++++. ++.|.+|++.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~----g~~l~v~~l~ 115 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAV----GNKLYVYDLD 115 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEE----TTEEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEee----cCEEEEEEcc
Confidence 467777653 288999999884 222222 2335678887776 44566665 7899999998
Q ss_pred CCc-eeeeec-ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccC-ceeeeeE-e---ecCCCeeEecCCCcEEEEee-C
Q 023822 110 DNK-YLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA-EKCQGLL-R---VQGRPAAAYDDQGLVFAVAF-G 181 (276)
Q Consensus 110 ~~~-~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~-~---~~~~~~~~~~~~~~~l~~~~-d 181 (276)
..+ ....-. .....+.++.. .+++++.|+....+.++..+. ......+ . ...+.++.+-+++..++++. +
T Consensus 116 ~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~ 193 (321)
T PF03178_consen 116 NSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKD 193 (321)
T ss_dssp TTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETT
T ss_pred CcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCC
Confidence 887 333221 12234555554 466899999888888875554 2223333 2 12234566654444555555 8
Q ss_pred CeEEEEecccCC-----CC-CeeeeeecCCCCCceEE---EECC--CC------cEEEEeecCCcEEEE
Q 023822 182 GYIRMFDARKYE-----KG-PFDIFSVGGDISDANVV---KFSN--DG------RLMLLTTMEGHIHVL 233 (276)
Q Consensus 182 ~~i~~~d~~~~~-----~~-~~~~~~~~~~~~~i~~~---~~~~--~~------~~l~~~~~dg~i~i~ 233 (276)
|.+.++...... .. .+...........|+++ .+.| .+ ..++.++.+|.|...
T Consensus 194 gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 194 GNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 999999876321 11 12222222233456666 4455 22 247778888888743
No 359
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.5e-05 Score=65.46 Aligned_cols=94 Identities=14% Similarity=0.146 Sum_probs=78.6
Q ss_pred CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceE-EEEEeccCCeEEEeccCCCCCceEEEEccCCc
Q 023822 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD-LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 112 (276)
Q Consensus 34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~ 112 (276)
...|.-+.|+|.-.++|++..+|.+.+..+. .+.+.++..+...++ +++|.|||+.+++|-. ||+|++.|++++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~k---dG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFK---DGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEec---CCeEEEEEccCCC
Confidence 4568889999999999999999999999887 777888886766777 9999999999999999 9999999999987
Q ss_pred eeeee-cccCcceEEEEecc
Q 023822 113 YLRYF-KGHHDRVVSLSLCS 131 (276)
Q Consensus 113 ~~~~~-~~~~~~i~~~~~~~ 131 (276)
.+... ......|.++-|.+
T Consensus 96 ~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ceeccccccccchheeeccc
Confidence 76652 22455677777763
No 360
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.12 E-value=0.0019 Score=54.47 Aligned_cols=192 Identities=19% Similarity=0.228 Sum_probs=112.8
Q ss_pred CCEEEEeecCCeEEEEEccCCeeeeeeeeeee------ceE--EEEEeccCCeEEEeccCCCCCceEEEEccCCceeeee
Q 023822 46 SSYLVTASDDESIRLYDVTAATCLKTINSKKY------GVD--LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF 117 (276)
Q Consensus 46 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~ 117 (276)
+..++.++.++.+.-.|..+|+.+-.+..... .+. .+... ++..++.++. ++.|.-+|.++++.+..+
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~---~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF---DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC---CCeEEEEECCCCCEeeee
Confidence 45677777889999999999987766643321 000 11111 2256777776 999999999999998876
Q ss_pred cccCcc-----e-EEEEeccCCCEEEEee---------CCCeEEEEeccCceeeeeEeecCC------------------
Q 023822 118 KGHHDR-----V-VSLSLCSSKDCFISGS---------LDRTVLLWDQRAEKCQGLLRVQGR------------------ 164 (276)
Q Consensus 118 ~~~~~~-----i-~~~~~~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~------------------ 164 (276)
...... + ....+. +..++.++ .++.+..+|..+++.+-.+.....
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG 214 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence 543221 1 111221 24455553 367899999998887665532110
Q ss_pred -----CeeEecCCC-cEEEEeeCC------------------eEEEEecccCCCCCeeeeeecCCCC----CceEEEEC-
Q 023822 165 -----PAAAYDDQG-LVFAVAFGG------------------YIRMFDARKYEKGPFDIFSVGGDIS----DANVVKFS- 215 (276)
Q Consensus 165 -----~~~~~~~~~-~~l~~~~d~------------------~i~~~d~~~~~~~~~~~~~~~~~~~----~i~~~~~~- 215 (276)
...++++.+ .+++...++ .+.-+|.++++..-. +....+.. ......+.
T Consensus 215 g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~--~~~~~~~~~~~~~~s~p~~~~ 292 (488)
T cd00216 215 GGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWF--YQTTPHDLWDYDGPNQPSLAD 292 (488)
T ss_pred CCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEE--eeCCCCCCcccccCCCCeEEe
Confidence 123444444 444444344 688889888775211 11111110 00001111
Q ss_pred ---CCCc---EEEEeecCCcEEEEECCCCcEEEEee
Q 023822 216 ---NDGR---LMLLTTMEGHIHVLDSFRGTLLSTYN 245 (276)
Q Consensus 216 ---~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~ 245 (276)
-+|. .++.++.+|.+...|..+|+.+-...
T Consensus 293 ~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 293 IKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred ccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 1332 67888899999999999999887654
No 361
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.09 E-value=6.3e-07 Score=73.42 Aligned_cols=159 Identities=19% Similarity=0.271 Sum_probs=104.5
Q ss_pred eeeccCCCcEEEEEEcC-CCCEEEEee----cCCeEEEEEccCC--ee--eeeeee-eeeceEEEEEeccCCeEEEeccC
Q 023822 28 MSFRDYNGRISSMDFHK-SSSYLVTAS----DDESIRLYDVTAA--TC--LKTINS-KKYGVDLVCFTSHPTTVIYSSKN 97 (276)
Q Consensus 28 ~~~~~h~~~v~~~~~~~-~~~~l~~~~----~d~~i~iwd~~~~--~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~ 97 (276)
....+|..+.++++|++ |.+.||.|- .|..+.|||+.++ .+ ...+.. ......+++|..+.+.+++|..
T Consensus 96 E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~- 174 (783)
T KOG1008|consen 96 EVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT- 174 (783)
T ss_pred eecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccc-
Confidence 34557788999999998 667777763 3567999999876 21 112222 2334568888888888888887
Q ss_pred CCCCceEEEEccCCceeeeecccCcceEEEEecc-CCCEEEEeeCCCeEEEEe-ccCce-eeeeE-ee-----cCCCeeE
Q 023822 98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWD-QRAEK-CQGLL-RV-----QGRPAAA 168 (276)
Q Consensus 98 ~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd-~~~~~-~~~~~-~~-----~~~~~~~ 168 (276)
...+.++|++...... ..-.+..+..+...| .++++++-. ||.|.+|| .++-+ +...+ +. .....++
T Consensus 175 --sr~~~ifdlRqs~~~~-~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~a 250 (783)
T KOG1008|consen 175 --SRSVHIFDLRQSLDSV-SSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALA 250 (783)
T ss_pred --cchhhhhhhhhhhhhh-hhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEE
Confidence 8899999987432111 111234566677888 677777665 99999999 33322 22222 11 2255789
Q ss_pred ecCCC--cEEEEee-CCeEEEEeccc
Q 023822 169 YDDQG--LVFAVAF-GGYIRMFDARK 191 (276)
Q Consensus 169 ~~~~~--~~l~~~~-d~~i~~~d~~~ 191 (276)
|+|.. .+.+... .++|++||++.
T Consensus 251 ycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 251 YCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred eccCCcchhhhhccCcceEEEecccc
Confidence 98854 4444444 59999999875
No 362
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.09 E-value=0.0019 Score=53.02 Aligned_cols=163 Identities=17% Similarity=0.112 Sum_probs=82.4
Q ss_pred ceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE----eecCCCee-----EecCC
Q 023822 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL----RVQGRPAA-----AYDDQ 172 (276)
Q Consensus 102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~-----~~~~~ 172 (276)
.|.+|+.. |+.+..+.-..+.|.++.|..+. .|+....||.+++||+.... ...+ ....+... .+...
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence 48888754 44555543333889999998765 45666789999999987444 1111 12222211 22334
Q ss_pred CcEEEEeeCCeEEEEecccCCCCCeeeeeecC-----CCC-CceE-EEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822 173 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGG-----DIS-DANV-VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN 245 (276)
Q Consensus 173 ~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----~~~-~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 245 (276)
|..+ ...++.+.+..--.............. +.. .... ..++.+....+....++.+.+.+-...+. +
T Consensus 139 Givv-Lt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i- 213 (410)
T PF04841_consen 139 GIVV-LTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I- 213 (410)
T ss_pred CEEE-ECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c-
Confidence 5333 333444444322111100000001000 000 0000 22333444444444445555444222211 1
Q ss_pred cCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822 246 VKPVSRNSTLEASFSPEGMFVISGRVSPFS 275 (276)
Q Consensus 246 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 275 (276)
...+++..++.||+|++||.-..+|.+
T Consensus 214 ---~~~~~i~~iavSpng~~iAl~t~~g~l 240 (410)
T PF04841_consen 214 ---DSDGPIIKIAVSPNGKFIALFTDSGNL 240 (410)
T ss_pred ---cCCCCeEEEEECCCCCEEEEEECCCCE
Confidence 134689999999999999988888763
No 363
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.08 E-value=0.00066 Score=55.03 Aligned_cols=200 Identities=10% Similarity=0.152 Sum_probs=103.8
Q ss_pred hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeee--e------eeeceEEEEEec-----cC
Q 023822 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--S------KKYGVDLVCFTS-----HP 88 (276)
Q Consensus 22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~------~~~~v~~~~~~~-----~~ 88 (276)
+.+.+...++...++|++++.|. =-++|.|.++|.+.|.|++....+..-. . ....++++.|.- |+
T Consensus 74 ~gf~P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 74 EGFLPLTLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred cccCchhheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 45677777777899999999984 4599999999999999998777665522 1 233577787762 22
Q ss_pred ---CeEEEeccCCCCCceEEEEccC---Ccee----eeecccCcceEEEE-eccC-----------------C---CEEE
Q 023822 89 ---TTVIYSSKNGWDESLRLLSLHD---NKYL----RYFKGHHDRVVSLS-LCSS-----------------K---DCFI 137 (276)
Q Consensus 89 ---~~l~~~~~~~~d~~i~~~d~~~---~~~~----~~~~~~~~~i~~~~-~~~~-----------------~---~~l~ 137 (276)
-.+++|.. .|.+.+|.+.- +... .....+.++|..+. ++.+ + +-++
T Consensus 153 ySSi~L~vGTn---~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~v 229 (395)
T PF08596_consen 153 YSSICLLVGTN---SGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYV 229 (395)
T ss_dssp SEEEEEEEEET---TSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEE
T ss_pred ccceEEEEEeC---CCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEE
Confidence 35677776 89999998741 2111 11223555555554 3211 1 2234
Q ss_pred EeeCCCeEEEEeccCceeeeeEeecCCC--eeEec-----CCCcEEEEee-CCeEEEEecccCCCCCeeeeeec--CCCC
Q 023822 138 SGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYD-----DQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVG--GDIS 207 (276)
Q Consensus 138 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~-----~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~--~~~~ 207 (276)
....+..++++...+.+..+........ .+.+- ..+..|++-. +|.|++|.+-..+. +....+. ....
T Consensus 230 VvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke--i~~~~l~~~~d~~ 307 (395)
T PF08596_consen 230 VVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE--IKSVSLPPPLDSR 307 (395)
T ss_dssp EEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E--EEEEE-SS---HH
T ss_pred EEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH--hhcccCCCccccc
Confidence 4444678999998877766554322111 22231 2344444444 89999999987543 2122221 1112
Q ss_pred CceEEEECCCCcEEEEeecC
Q 023822 208 DANVVKFSNDGRLMLLTTME 227 (276)
Q Consensus 208 ~i~~~~~~~~~~~l~~~~~d 227 (276)
.+....++++|..++-.+..
T Consensus 308 ~~~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 308 RLSSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp HHTT-EE-TTS-EEEE-SSS
T ss_pred cccccEECCCCCEEEEeCcc
Confidence 34567789999877666543
No 364
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.08 E-value=0.0029 Score=49.46 Aligned_cols=196 Identities=15% Similarity=0.187 Sum_probs=115.4
Q ss_pred EEEEcCCCCEEEEee--cCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEcc-CCceee
Q 023822 39 SMDFHKSSSYLVTAS--DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH-DNKYLR 115 (276)
Q Consensus 39 ~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~-~~~~~~ 115 (276)
.++++.|+++++... --..|.|-|+...+.+.++.... +..+--.+ ++.+.+.+. ||.+.-..+. .|+...
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~-~~~F~~lC~---DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSG-NRGFSMLCG---DGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEE-TTEEEEEET---TSCEEEEEETSTSSEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecC-CCceEEEec---CCceEEEEECCCCCEeE
Confidence 467888888877654 33468889998888887775432 22222222 244556665 9999999887 455432
Q ss_pred ee----cccCcce-EEEEeccCCCEEEEeeCCCeEEEEeccCceeeee--E------------eecCCCeeEecCCC-cE
Q 023822 116 YF----KGHHDRV-VSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL--L------------RVQGRPAAAYDDQG-LV 175 (276)
Q Consensus 116 ~~----~~~~~~i-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~------------~~~~~~~~~~~~~~-~~ 175 (276)
.. ..-..++ ..-++...+..++--+.+|.|+--|+........ + ...+-..+++++.. ++
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 21 1111222 2333444555666678899999888876542211 1 23344468888655 44
Q ss_pred EEEee--------C--CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCc-EEEEe-ecCCcEEEEECCCCcEEEE
Q 023822 176 FAVAF--------G--GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLT-TMEGHIHVLDSFRGTLLST 243 (276)
Q Consensus 176 l~~~~--------d--~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~~dg~i~i~d~~~~~~~~~ 243 (276)
++.-. | ..|-+||+.+.+. +..+.. ..++.+|+.+.+.+ +|++. ..++.+.+||..+|+.+.+
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~kr----v~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKR----VARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEE----EEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeE----EEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 44322 1 2577778777553 333321 23678999998765 56554 4578999999999999999
Q ss_pred ee
Q 023822 244 YN 245 (276)
Q Consensus 244 ~~ 245 (276)
+.
T Consensus 328 ~~ 329 (342)
T PF06433_consen 328 IE 329 (342)
T ss_dssp E-
T ss_pred hh
Confidence 87
No 365
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.07 E-value=1.5e-05 Score=40.66 Aligned_cols=38 Identities=34% Similarity=0.573 Sum_probs=33.3
Q ss_pred ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEe
Q 023822 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149 (276)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 149 (276)
++...+..|...|.++.|+++++.+++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44566677889999999999999999999999999996
No 366
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.05 E-value=0.00087 Score=43.13 Aligned_cols=100 Identities=13% Similarity=0.218 Sum_probs=65.3
Q ss_pred eEEEEecc---CC-CEEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCee
Q 023822 124 VVSLSLCS---SK-DCFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD 198 (276)
Q Consensus 124 i~~~~~~~---~~-~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~ 198 (276)
|++|++.. +| +.|++|+.|..|++|+-. +.+..+ ....+..+.-...+++.++-.+|+|-+|+-.. .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~------R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQ------R 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcc------e
Confidence 55666554 33 489999999999999744 455555 44556677777777777777799999998643 1
Q ss_pred eeeecCCCCCceEEEEC-CCC---cEEEEeecCCcEEE
Q 023822 199 IFSVGGDISDANVVKFS-NDG---RLMLLTTMEGHIHV 232 (276)
Q Consensus 199 ~~~~~~~~~~i~~~~~~-~~~---~~l~~~~~dg~i~i 232 (276)
....+... .+.++++. .++ +.|++|-.+|.|-+
T Consensus 74 lWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 74 LWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 33333333 35555443 332 46888888887643
No 367
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.04 E-value=0.0013 Score=56.24 Aligned_cols=188 Identities=8% Similarity=-0.008 Sum_probs=105.3
Q ss_pred CcEEEEEEcCCCCEEEEee------cCC--eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccC---------
Q 023822 35 GRISSMDFHKSSSYLVTAS------DDE--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN--------- 97 (276)
Q Consensus 35 ~~v~~~~~~~~~~~l~~~~------~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--------- 97 (276)
..+...+++|+|+.+|... .|+ .|.+++. .+.. ..+.... ....-.|+|+++.+.+....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEGH-SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecCC-CCCCceECCCCCceEEEecCcceEEEecc
Confidence 4577889999999887655 243 4555554 2222 3332222 37888999998877776531
Q ss_pred CCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEE---EeccCcee-e---eeE--eecC-CCee
Q 023822 98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLL---WDQRAEKC-Q---GLL--RVQG-RPAA 167 (276)
Q Consensus 98 ~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i---wd~~~~~~-~---~~~--~~~~-~~~~ 167 (276)
...+.+.+.++..++... .....|..+.|+|||..++... ++.|.+ -....+.. + ..+ .... ...+
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 012344444555444332 3356799999999999887765 577776 33333431 1 011 1222 4678
Q ss_pred EecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEE
Q 023822 168 AYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV 232 (276)
Q Consensus 168 ~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 232 (276)
.|.+++.+++...++.-.+|.+.-...... .........++..++-+++ .++....+|.+.+
T Consensus 503 ~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 503 DWRTGDSLVVGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred eEecCCEEEEEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 999999987665544334444332211110 1111112456667776663 3555666664443
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.0002 Score=58.09 Aligned_cols=135 Identities=9% Similarity=0.125 Sum_probs=92.2
Q ss_pred CCC-EEEEeeCCCeEEEEeccCceeeeeEeec-CCCeeEecCCC--------cEEEEeeCCeEEEEecccCCCCCeeeee
Q 023822 132 SKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQG--------LVFAVAFGGYIRMFDARKYEKGPFDIFS 201 (276)
Q Consensus 132 ~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~--------~~l~~~~d~~i~~~d~~~~~~~~~~~~~ 201 (276)
+.+ +|.++.....++-.|++.++.+.....+ .++.+.+.|+. .-|++-++..|.-||+|-.....+....
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 444 3445555677999999999999888433 36777777764 3455666899999999864432221111
Q ss_pred e--cCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcE-EEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822 202 V--GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEGMFVISGRV 271 (276)
Q Consensus 202 ~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 271 (276)
. ........|.+-..+| ++++||.+|.||+||- .+.. ...+. +...+|..+..+.||++++..+.
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlP---gLG~~I~hVdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALP---GLGDAIKHVDVTADGKWILATCK 491 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhccc---ccCCceeeEEeeccCcEEEEecc
Confidence 1 1122356666666666 6999999999999996 4433 33344 78899999999999999876554
No 369
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.93 E-value=0.0043 Score=47.40 Aligned_cols=148 Identities=17% Similarity=0.206 Sum_probs=89.0
Q ss_pred ceEEEEeccCCCEEEEee---CCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-CCeEEEEe-cccCCCCC
Q 023822 123 RVVSLSLCSSKDCFISGS---LDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-GGYIRMFD-ARKYEKGP 196 (276)
Q Consensus 123 ~i~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d-~~~~~~~~ 196 (276)
.+.+.+++++++.++... ....++++... ...... .......-.|++++.+.+... +...+++. ...+...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 678899999999777655 23345555433 322222 444666788999998887776 45555553 33333222
Q ss_pred eeeeeecCCCCCceEEEECCCCcEEEEee---cCCcEEEEECC---CC---cEEEEeecCCCCCCceEEEEECCCCcEEE
Q 023822 197 FDIFSVGGDISDANVVKFSNDGRLMLLTT---MEGHIHVLDSF---RG---TLLSTYNVKPVSRNSTLEASFSPEGMFVI 267 (276)
Q Consensus 197 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~---~~---~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 267 (276)
... ........|..+.+||||..++... .++.|.+--+. .+ ...............+.+++|.+++.+++
T Consensus 103 ~~v-~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 103 VEV-DWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred EEe-cccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 211 1111112899999999998877765 34667766432 33 11111121112356889999999999887
Q ss_pred EecCCC
Q 023822 268 SGRVSP 273 (276)
Q Consensus 268 ~~~~dg 273 (276)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 766554
No 370
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.89 E-value=0.0066 Score=47.08 Aligned_cols=149 Identities=14% Similarity=0.121 Sum_probs=93.3
Q ss_pred ccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeee-------
Q 023822 86 SHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL------- 158 (276)
Q Consensus 86 ~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~------- 158 (276)
..++.++.|+. +| +.++++........+. +...|..+...|+-+.+++-+ |+.++++++..-.....
T Consensus 5 ~~~~~L~vGt~---~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTE---DG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEEC---CC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 35788899976 66 9999983332222222 233499999999888776665 59999999886544331
Q ss_pred --------E-eecCCCeeE---ecCCCcEEEEeeCCeEEEEecccCCCCC-eeeeeecCCCCCceEEEECCCCcEEEEee
Q 023822 159 --------L-RVQGRPAAA---YDDQGLVFAVAFGGYIRMFDARKYEKGP-FDIFSVGGDISDANVVKFSNDGRLMLLTT 225 (276)
Q Consensus 159 --------~-~~~~~~~~~---~~~~~~~l~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 225 (276)
+ ...++...+ -......++++....|.+|......... .....+ .-...+..++|. ++.++.|.
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~--~~~i~v~~ 155 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL--GNKICVGT 155 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe--CCEEEEEe
Confidence 1 111222223 2234467777778899999988743211 112222 233678889998 45677776
Q ss_pred cCCcEEEEECCCCcEEEEe
Q 023822 226 MEGHIHVLDSFRGTLLSTY 244 (276)
Q Consensus 226 ~dg~i~i~d~~~~~~~~~~ 244 (276)
.+ ...+.|+.++.....+
T Consensus 156 ~~-~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 156 SK-GFYLIDLNTGSPSELL 173 (275)
T ss_pred CC-ceEEEecCCCCceEEe
Confidence 55 4788998877665444
No 371
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.87 E-value=0.013 Score=49.91 Aligned_cols=102 Identities=8% Similarity=0.072 Sum_probs=65.8
Q ss_pred CCeEEEEEccCCeeeeeeeeeee-------------------------------ce-EEEEEeccCCeEEEeccC-----
Q 023822 55 DESIRLYDVTAATCLKTINSKKY-------------------------------GV-DLVCFTSHPTTVIYSSKN----- 97 (276)
Q Consensus 55 d~~i~iwd~~~~~~~~~~~~~~~-------------------------------~v-~~~~~~~~~~~l~~~~~~----- 97 (276)
+|.|.-+|.++|+.+-.+..-.. .+ ..+++.+....++.+..+
T Consensus 180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~ 259 (527)
T TIGR03075 180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWN 259 (527)
T ss_pred CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCC
Confidence 68899999999987765432110 01 133555666666666532
Q ss_pred C--------CCCceEEEEccCCceeeeecccCcceEE---------EEeccCCC---EEEEeeCCCeEEEEeccCceee
Q 023822 98 G--------WDESLRLLSLHDNKYLRYFKGHHDRVVS---------LSLCSSKD---CFISGSLDRTVLLWDQRAEKCQ 156 (276)
Q Consensus 98 ~--------~d~~i~~~d~~~~~~~~~~~~~~~~i~~---------~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~ 156 (276)
+ +...|.-.|+++++....++.....+.. +.+..+|+ .++.+..+|.+++.|.++++.+
T Consensus 260 ~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 260 SHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 0 1226888899999988877643322222 22223665 7789999999999999998875
No 372
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.0016 Score=53.07 Aligned_cols=141 Identities=16% Similarity=0.242 Sum_probs=97.8
Q ss_pred cCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCC-------EEEEeeCCCeEEEEeccCcee-eee
Q 023822 87 HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-------CFISGSLDRTVLLWDQRAEKC-QGL 158 (276)
Q Consensus 87 ~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~d~~i~iwd~~~~~~-~~~ 158 (276)
+.+.++..... ...++-.|++.|+.+..++-+.. |.-+.+.|+.+ .-+.|-.|..|.-||.|-... ...
T Consensus 344 dsnlil~~~~~--~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 344 DSNLILMDGGE--QDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred ccceEeeCCCC--cCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence 34444443322 67789999999999999987766 77777887643 234566688999999984332 111
Q ss_pred E-------eecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEE
Q 023822 159 L-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIH 231 (276)
Q Consensus 159 ~-------~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 231 (276)
. ......|.+-..+|.+++++.+|.|++||--. ... ...+++...+|..+..+.+|++++..+ +..+.
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~-~~A---KTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLl 495 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIG-RRA---KTALPGLGDAIKHVDVTADGKWILATC-KTYLL 495 (644)
T ss_pred eeeccccccccccceeeecCCceEEEeecCCcEEeehhhh-hhh---hhcccccCCceeeEEeeccCcEEEEec-ccEEE
Confidence 1 22234577777888888888899999999732 221 334567778999999999999887654 55677
Q ss_pred EEEC
Q 023822 232 VLDS 235 (276)
Q Consensus 232 i~d~ 235 (276)
+.++
T Consensus 496 Li~t 499 (644)
T KOG2395|consen 496 LIDT 499 (644)
T ss_pred EEEE
Confidence 7664
No 373
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.85 E-value=0.0046 Score=46.71 Aligned_cols=186 Identities=15% Similarity=0.157 Sum_probs=112.2
Q ss_pred EEcCCCCEEEEeecC-----CeEEEEEccCC-eeeeeeeeeeeceEEEEEeccCCeEEEeccC---------------CC
Q 023822 41 DFHKSSSYLVTASDD-----ESIRLYDVTAA-TCLKTINSKKYGVDLVCFTSHPTTVIYSSKN---------------GW 99 (276)
Q Consensus 41 ~~~~~~~~l~~~~~d-----~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---------------~~ 99 (276)
.|||||.+|...-.| |.|-|||...+ +.+.++..|.-....+.|.+|++.++.+..+ ..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM 199 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM 199 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence 589999998865433 68899998743 5567778888788899999999999987531 01
Q ss_pred CCceEEEEccCCceeee--ec--ccCcceEEEEeccCCCEEEEeeCCCe-----EEEEeccCceeeeeEe---------e
Q 023822 100 DESLRLLSLHDNKYLRY--FK--GHHDRVVSLSLCSSKDCFISGSLDRT-----VLLWDQRAEKCQGLLR---------V 161 (276)
Q Consensus 100 d~~i~~~d~~~~~~~~~--~~--~~~~~i~~~~~~~~~~~l~~~~~d~~-----i~iwd~~~~~~~~~~~---------~ 161 (276)
.-.+.+.|..+++.+.+ +. .+...|..++..+||..++-+-..|. -.+=-.+.++....+. .
T Consensus 200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~a 279 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFA 279 (366)
T ss_pred CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHH
Confidence 23344555445544332 22 24456788888888876665544331 1111112233333331 1
Q ss_pred cCCCeeEecCCCcEEEEee--CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEE
Q 023822 162 QGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234 (276)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 234 (276)
+.+-+++.+.+..+++..+ .+...+||..++.. .... .-.....++-. ..-+++.+.+|.+.++.
T Consensus 280 nYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~v-----v~~a-~l~daaGva~~--~~gf~vssg~G~~~~~s 346 (366)
T COG3490 280 NYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAV-----VSEA-ALPDAAGVAAA--KGGFAVSSGQGRIIFYS 346 (366)
T ss_pred hhhhheeecccCCeEEEecCCCCeEEEEEcCCCcE-----Eecc-cccccccceec--cCceEEecCCceEEecc
Confidence 2244778887777777666 67889999998763 1111 11122333333 33366777888888874
No 374
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.79 E-value=6.7e-05 Score=64.13 Aligned_cols=107 Identities=15% Similarity=0.157 Sum_probs=83.8
Q ss_pred EEEEeccCCCEEEEeeC----CCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCee
Q 023822 125 VSLSLCSSKDCFISGSL----DRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFD 198 (276)
Q Consensus 125 ~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~ 198 (276)
+-..|+|...+|++++- .|+|.||- +++++.... ..-.+.+++|+|...+|+.+. -|.+.+|.....+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~---- 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET---- 93 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCcee----
Confidence 44579999998887764 57888884 555554443 333456799999999999998 59999999876443
Q ss_pred eeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC
Q 023822 199 IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF 236 (276)
Q Consensus 199 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 236 (276)
-.....|+.+|..+.|||+|..|+++..-|.|.+|...
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 23345688999999999999999999999999999865
No 375
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.75 E-value=0.0081 Score=44.08 Aligned_cols=208 Identities=12% Similarity=0.117 Sum_probs=112.9
Q ss_pred CEEEEeecCCeEEEEEccCCeeee-eeeeeeeceEEEEEeccC--CeEEEeccCCCCCceEEEEcc--CCceeeeecc--
Q 023822 47 SYLVTASDDESIRLYDVTAATCLK-TINSKKYGVDLVCFTSHP--TTVIYSSKNGWDESLRLLSLH--DNKYLRYFKG-- 119 (276)
Q Consensus 47 ~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~--~~l~~~~~~~~d~~i~~~d~~--~~~~~~~~~~-- 119 (276)
.++.+-=..+.|.-||.+..+..+ .+... +...+.+--.+ +.++++.. ..-.|.-||.. .....+++..
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G--~kf~i~nwd~~~~~a~v~~t~~ev~ 103 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCG--SKFVIVNWDGVSESAKVYRTLFEVQ 103 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeec--ceEEEEEcccccceeeeeeeccccC
Confidence 445554456677778887654332 22222 23333332222 23333321 03345556632 2222333211
Q ss_pred ---cCcceEEEEeccCCCEEEEeeCC---------CeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee--CCeE
Q 023822 120 ---HHDRVVSLSLCSSKDCFISGSLD---------RTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF--GGYI 184 (276)
Q Consensus 120 ---~~~~i~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~--d~~i 184 (276)
.....+.-..+|+|++++-.-.| |.++.|-... +..... ...-.+.++|+.+.+.+..-. +-.|
T Consensus 104 ~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 104 PDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred chHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCC-CceeeehhccCCccccccccCcEEEEEccCceEE
Confidence 13455667788999985432222 3344443221 111122 222234788888776665554 6777
Q ss_pred EEEe--cccCCCC-CeeeeeecC----CCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEE
Q 023822 185 RMFD--ARKYEKG-PFDIFSVGG----DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 257 (276)
Q Consensus 185 ~~~d--~~~~~~~-~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 257 (276)
.-|| ..++... +..++.+.. .....-.+++..+|++.++.-..++|...|..+|+.+.++. -....|+++
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik---lPt~qitsc 259 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK---LPTPQITSC 259 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE---cCCCceEEE
Confidence 6677 4444321 112333222 11233456677788888888888999999999999999999 467889999
Q ss_pred EECCC
Q 023822 258 SFSPE 262 (276)
Q Consensus 258 ~~s~~ 262 (276)
+|--.
T Consensus 260 cFgGk 264 (310)
T KOG4499|consen 260 CFGGK 264 (310)
T ss_pred EecCC
Confidence 99644
No 376
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.74 E-value=0.01 Score=44.93 Aligned_cols=149 Identities=15% Similarity=0.247 Sum_probs=85.9
Q ss_pred CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe------eeeeee-----eeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822 35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAAT------CLKTIN-----SKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (276)
Q Consensus 35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i 103 (276)
+-.-.+++..++.++++.-.++.+.++++.... ....+. .++..+-.++|.+.++.|+++-. ....
T Consensus 65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE---~~P~ 141 (248)
T PF06977_consen 65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE---RKPK 141 (248)
T ss_dssp SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE---SSSE
T ss_pred CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC---CCCh
Confidence 456778888777777766568999999884321 111221 23456899999999999888876 6666
Q ss_pred EEEEccC---Cceee--ee------cccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeEeec---------
Q 023822 104 RLLSLHD---NKYLR--YF------KGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQ--------- 162 (276)
Q Consensus 104 ~~~d~~~---~~~~~--~~------~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------- 162 (276)
.+|.+.. ..... .. ......+.+++++|... +++.......|..+| .+++.+..+...
T Consensus 142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~ 220 (248)
T PF06977_consen 142 RLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKD 220 (248)
T ss_dssp EEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS-
T ss_pred hhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccc
Confidence 6776654 21111 11 12334578899999654 666667788899999 666666655222
Q ss_pred --CCCeeEecCCCcEEEEeeCCeEEEE
Q 023822 163 --GRPAAAYDDQGLVFAVAFGGYIRMF 187 (276)
Q Consensus 163 --~~~~~~~~~~~~~l~~~~d~~i~~~ 187 (276)
....+++.++|++++++.-+..++|
T Consensus 221 ~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 221 IPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp --SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred cCCccEEEECCCCCEEEEcCCceEEEe
Confidence 2447999999998888875555544
No 377
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.71 E-value=0.011 Score=44.63 Aligned_cols=187 Identities=13% Similarity=0.117 Sum_probs=109.8
Q ss_pred eEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCc-ceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee
Q 023822 79 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHD-RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG 157 (276)
Q Consensus 79 v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 157 (276)
...+.|..++..+-+.+.-| ...|+.+|+.+++......-... ---.++.. +++...-.=.++...+||..+.+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG-~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYG-QSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTT-EEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCCCEEEEeCCCCC-cEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEE
Confidence 56778877777777766633 56899999999987655432211 11233333 23344444468899999999998888
Q ss_pred eEeec-CCCeeEecCCC-cEEEEeeCCeEEEEecccCCCCCeeeeeecC-CCCCceEEEECCCCcEEEEeecCCcEEEEE
Q 023822 158 LLRVQ-GRPAAAYDDQG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGG-DISDANVVKFSNDGRLMLLTTMEGHIHVLD 234 (276)
Q Consensus 158 ~~~~~-~~~~~~~~~~~-~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 234 (276)
.++.. .-..++ .++ .++.+.....++++|..+.+..........+ .-..++.+.|- +|...|=.=....|...|
T Consensus 125 ~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Id 201 (264)
T PF05096_consen 125 TFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRID 201 (264)
T ss_dssp EEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred EEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEe
Confidence 88433 334555 334 4444444789999998876532211111111 12245556665 676666666677899999
Q ss_pred CCCCcEEEEeecCC------------CCCCceEEEEECCCCcEEEEec
Q 023822 235 SFRGTLLSTYNVKP------------VSRNSTLEASFSPEGMFVISGR 270 (276)
Q Consensus 235 ~~~~~~~~~~~~~~------------~~~~~v~~~~~s~~g~~l~~~~ 270 (276)
..+|+....+.... ....-.+.+|+.|..+.|...|
T Consensus 202 p~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 202 PETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 99999988764210 1134589999998776554443
No 378
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.66 E-value=0.024 Score=46.90 Aligned_cols=160 Identities=13% Similarity=0.110 Sum_probs=88.1
Q ss_pred eEEEEEeccCCeEEEeccCCC--CCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCC-----------eE
Q 023822 79 VDLVCFTSHPTTVIYSSKNGW--DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-----------TV 145 (276)
Q Consensus 79 v~~~~~~~~~~~l~~~~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----------~i 145 (276)
+....++|++++++.+-..+. ...++++|+.+++.+...-. ......+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 446789999999987743211 24699999999976653211 11223499999988766554332 37
Q ss_pred EEEeccCceee--eeEeec--C--CCeeEecCCCcEEEEee----C-CeEEEEecccCCCCCeeeeeecCCCCCceEEEE
Q 023822 146 LLWDQRAEKCQ--GLLRVQ--G--RPAAAYDDQGLVFAVAF----G-GYIRMFDARKYEKGPFDIFSVGGDISDANVVKF 214 (276)
Q Consensus 146 ~iwd~~~~~~~--~~~~~~--~--~~~~~~~~~~~~l~~~~----d-~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 214 (276)
+.|.+.+.... ..+... . ...+..++++++++... + ..+.+.|+............+......+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888766443 233221 1 23677889998877654 3 568888887641001112222222223333222
Q ss_pred CCCCcEEEEee---cCCcEEEEECCCCc
Q 023822 215 SNDGRLMLLTT---MEGHIHVLDSFRGT 239 (276)
Q Consensus 215 ~~~~~~l~~~~---~dg~i~i~d~~~~~ 239 (276)
+.++.+++... ..+.|.-.++.+..
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccc
Confidence 33444444433 34567777777665
No 379
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.65 E-value=0.02 Score=45.76 Aligned_cols=226 Identities=13% Similarity=0.094 Sum_probs=106.6
Q ss_pred EEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEe--ccCCeEEEeccC-------------------
Q 023822 39 SMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFT--SHPTTVIYSSKN------------------- 97 (276)
Q Consensus 39 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~~------------------- 97 (276)
...++|+.+.++-......|+-.|+++.+....+.....-+-...|. .++..++..-..
T Consensus 85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a 164 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEA 164 (386)
T ss_dssp T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC
T ss_pred ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhh
Confidence 45667877887665556788889999988766666665555445554 344444332110
Q ss_pred CCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCC-----eEEEEeccCc-eeeeeEeecC----CCee
Q 023822 98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-----TVLLWDQRAE-KCQGLLRVQG----RPAA 167 (276)
Q Consensus 98 ~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~-~~~~~~~~~~----~~~~ 167 (276)
.....|.-.|+.+++....+. -...+..+.|+|....+++=+..| .-+||-+++. .....++... +..-
T Consensus 165 ~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHE 243 (386)
T PF14583_consen 165 RPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHE 243 (386)
T ss_dssp ---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEE
T ss_pred CCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccc
Confidence 013456666777776544443 566778899999665444433322 1255655432 1222221111 2244
Q ss_pred EecCCCcEEEE-ee-----CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC-------------
Q 023822 168 AYDDQGLVFAV-AF-----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG------------- 228 (276)
Q Consensus 168 ~~~~~~~~l~~-~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------------- 228 (276)
.|.|+|..+.. +. +..|.-+|+.+.+.. ..... .+......++||++++-=+.|.
T Consensus 244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~--~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~ 317 (386)
T PF14583_consen 244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR--RLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIE 317 (386)
T ss_dssp EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE--EEEEE-----SEEEEEE-TTSSEEEEEE----------------
T ss_pred cccCCCCEEEEEeecCCCCceEEEeeCCCCCCce--EEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceec
Confidence 67888855443 22 345667777765431 11111 1344566778998765433331
Q ss_pred ---cEEEEECCCCcEEEEeec------CCCCC-CceEEEEECCCCcEEEEecC
Q 023822 229 ---HIHVLDSFRGTLLSTYNV------KPVSR-NSTLEASFSPEGMFVISGRV 271 (276)
Q Consensus 229 ---~i~i~d~~~~~~~~~~~~------~~~~~-~~v~~~~~s~~g~~l~~~~~ 271 (276)
.|++++...+........ ..++. ..=....|+|||++++..|.
T Consensus 318 ~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 318 NDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp ---EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-
T ss_pred CCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECC
Confidence 466788877665322220 00000 01235789999998765543
No 380
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.65 E-value=0.00027 Score=38.01 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=30.1
Q ss_pred CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCee
Q 023822 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC 68 (276)
Q Consensus 34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 68 (276)
..+|.+++|+|...+||.+..+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 5543
No 381
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.62 E-value=0.016 Score=49.67 Aligned_cols=219 Identities=11% Similarity=0.095 Sum_probs=113.3
Q ss_pred CCCEEEEeecCC------eEEEEEccCCeeee--eeeeeeeceEEEEEeccCCeEEEeccC-C--CCCceEEEEccCCce
Q 023822 45 SSSYLVTASDDE------SIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYSSKN-G--WDESLRLLSLHDNKY 113 (276)
Q Consensus 45 ~~~~l~~~~~d~------~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~~-~--~d~~i~~~d~~~~~~ 113 (276)
.+.+++.|+.++ .+..+|..+++... .+.... .-.+++.. ++...++|+.+ + .-..+..||..+++-
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r-~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPR-CRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccc-ccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 456777887763 67788887764332 222222 22233333 55677777763 1 125677888877653
Q ss_pred ee--eecccCcceEEEEeccCCCEEEEeeCCCe-----EEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-C--
Q 023822 114 LR--YFKGHHDRVVSLSLCSSKDCFISGSLDRT-----VLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-G-- 181 (276)
Q Consensus 114 ~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-----i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d-- 181 (276)
.. .+........... -+|.+.++|+.||. +-.||.++.+-...- ...........-++++.++|. +
T Consensus 362 ~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred eccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCC
Confidence 22 2221222211111 27788999999864 777887765433222 111111222334566666555 3
Q ss_pred ----CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC-----cEEEEECCCCcEEEEeecCCCCCC
Q 023822 182 ----GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-----HIHVLDSFRGTLLSTYNVKPVSRN 252 (276)
Q Consensus 182 ----~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~ 252 (276)
..+..||..+..=. ....+........ ++ .-++.+.+.|+.|+ +|..||..+.+....-... ....
T Consensus 440 ~~~l~sve~YDP~t~~W~--~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~-~~rs 514 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWT--LIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT-SPRS 514 (571)
T ss_pred ccccceEEEEcCCCCcee--ecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc-cccc
Confidence 46788888774411 1111111111112 22 22567788888776 3777888776655442211 1122
Q ss_pred ceEEEEECCCCcEEEEecCCCC
Q 023822 253 STLEASFSPEGMFVISGRVSPF 274 (276)
Q Consensus 253 ~v~~~~~s~~g~~l~~~~~dg~ 274 (276)
.+..+ .-+++..++|+.||.
T Consensus 515 ~~g~~--~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 515 AVGVV--VLGGKLYAVGGFDGN 534 (571)
T ss_pred cccEE--EECCEEEEEecccCc
Confidence 22112 236678888888875
No 382
>PHA02713 hypothetical protein; Provisional
Probab=97.59 E-value=0.009 Score=51.21 Aligned_cols=194 Identities=10% Similarity=0.086 Sum_probs=96.2
Q ss_pred CCCEEEEeecC------CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCC--CCceEEEEccCCceee-
Q 023822 45 SSSYLVTASDD------ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW--DESLRLLSLHDNKYLR- 115 (276)
Q Consensus 45 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~--d~~i~~~d~~~~~~~~- 115 (276)
++...+.|+.+ ..+..||..+......-.-....-......-+++..+.|+..+. -..+..||..+++-..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 45666677643 34677887765432111111111111222236677777775221 1358889987664221
Q ss_pred -eecccCcceEEEEeccCCCEEEEeeCCC-----------------------eEEEEeccCceeeee--EeecCCCeeEe
Q 023822 116 -YFKGHHDRVVSLSLCSSKDCFISGSLDR-----------------------TVLLWDQRAEKCQGL--LRVQGRPAAAY 169 (276)
Q Consensus 116 -~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----------------------~i~iwd~~~~~~~~~--~~~~~~~~~~~ 169 (276)
.+.........+. -+++..+.|+.++ .+..||.++.+-... +..........
T Consensus 383 ~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~ 460 (557)
T PHA02713 383 PDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV 460 (557)
T ss_pred CCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE
Confidence 2221111111222 2677777777652 477788777654322 21122222222
Q ss_pred cCCCcEEEEee-C------CeEEEEeccc-CCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC--cEEEEECCCCc
Q 023822 170 DDQGLVFAVAF-G------GYIRMFDARK-YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG--HIHVLDSFRGT 239 (276)
Q Consensus 170 ~~~~~~l~~~~-d------~~i~~~d~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~ 239 (276)
.-++++.+.|. + ..+..||.++ .+ ......+.........+++ +|+..++|+.++ .+..||..+.+
T Consensus 461 ~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~--W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 461 SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG--WELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred EECCEEEEEeCCCCCCccceeEEEecCCCCCC--eeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 33455555554 3 2467888876 22 1112222222222233333 678888898888 67788887766
Q ss_pred EEEEe
Q 023822 240 LLSTY 244 (276)
Q Consensus 240 ~~~~~ 244 (276)
-....
T Consensus 537 W~~~~ 541 (557)
T PHA02713 537 WNHIC 541 (557)
T ss_pred ccchh
Confidence 55433
No 383
>PRK10115 protease 2; Provisional
Probab=97.59 E-value=0.046 Score=48.21 Aligned_cols=195 Identities=11% Similarity=0.053 Sum_probs=100.9
Q ss_pred CcEEEEEEcCCCCEEEEee-----cCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCC---CCCceEEE
Q 023822 35 GRISSMDFHKSSSYLVTAS-----DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG---WDESLRLL 106 (276)
Q Consensus 35 ~~v~~~~~~~~~~~l~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---~d~~i~~~ 106 (276)
-.+..+.++||+++|+.+. +...|++.|+.+++.+....... -..++|.++++.|+...... ....|+.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 3466788999999888653 23468899998876432221111 14589999998887765421 13568888
Q ss_pred EccCC--ceeeeecccCcceE-EEEeccCCCEEEEeeC---CCeEEEEecc--CceeeeeE-eecCCCeeEecCCCcEEE
Q 023822 107 SLHDN--KYLRYFKGHHDRVV-SLSLCSSKDCFISGSL---DRTVLLWDQR--AEKCQGLL-RVQGRPAAAYDDQGLVFA 177 (276)
Q Consensus 107 d~~~~--~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~---d~~i~iwd~~--~~~~~~~~-~~~~~~~~~~~~~~~~l~ 177 (276)
++.++ +-...+........ ....+.++++++..+. ++.+.+++.. .+.....+ .......-..+..+.+++
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~ 284 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYL 284 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEE
Confidence 88877 33333443333333 3333447776554443 3578888853 23322222 222222112233344444
Q ss_pred Eee-C---CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEE
Q 023822 178 VAF-G---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234 (276)
Q Consensus 178 ~~~-d---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 234 (276)
... + ..|...++.... .............+..+.+. .+.++++...+|.-+++-
T Consensus 285 ~tn~~~~~~~l~~~~~~~~~--~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~ 342 (686)
T PRK10115 285 RSNRHGKNFGLYRTRVRDEQ--QWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQ 342 (686)
T ss_pred EEcCCCCCceEEEecCCCcc--cCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence 443 2 234444444211 11121111123367777776 335555566676644443
No 384
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.58 E-value=0.038 Score=47.06 Aligned_cols=189 Identities=16% Similarity=0.142 Sum_probs=110.1
Q ss_pred CCEEEEeecCCeEEEEEccCCeeeeeeeeee-eceE----------EEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822 46 SSYLVTASDDESIRLYDVTAATCLKTINSKK-YGVD----------LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL 114 (276)
Q Consensus 46 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~----------~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~ 114 (276)
+..|+.++.++.|.-.|..+|+.+-.+.... ..+. .+++ .+..+++++. ++.|.-.|..+++.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~---dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTL---DARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcC---CCEEEEEECCCCCEE
Confidence 4567777778899999999998877664321 1111 1122 2345666666 899999999999988
Q ss_pred eeecccCcc-eEEEEecc---CCCEEEEee------CCCeEEEEeccCceeeeeEeecCC--------------------
Q 023822 115 RYFKGHHDR-VVSLSLCS---SKDCFISGS------LDRTVLLWDQRAEKCQGLLRVQGR-------------------- 164 (276)
Q Consensus 115 ~~~~~~~~~-i~~~~~~~---~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~~~-------------------- 164 (276)
......... -..+.-+| ++ .++.+. .+|.|.-+|.++++.+-.+...+.
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~t 222 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKT 222 (527)
T ss_pred eecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCC
Confidence 765421100 00111112 34 444443 268899999999887655411100
Q ss_pred --------------CeeEecCCCcEEEEee-C-----C-----------eEEEEecccCCCCCeeeeeecCCC-------
Q 023822 165 --------------PAAAYDDQGLVFAVAF-G-----G-----------YIRMFDARKYEKGPFDIFSVGGDI------- 206 (276)
Q Consensus 165 --------------~~~~~~~~~~~l~~~~-d-----~-----------~i~~~d~~~~~~~~~~~~~~~~~~------- 206 (276)
..++++|...++..+. + + .|.-.|+++++..-. ++...|.
T Consensus 223 w~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~--~Q~~~~D~wD~d~~ 300 (527)
T TIGR03075 223 WPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWH--YQTTPHDEWDYDGV 300 (527)
T ss_pred CCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEe--eeCCCCCCccccCC
Confidence 0346666555555444 1 1 556666666654211 1111121
Q ss_pred CCceEEEECCCCc---EEEEeecCCcEEEEECCCCcEEE
Q 023822 207 SDANVVKFSNDGR---LMLLTTMEGHIHVLDSFRGTLLS 242 (276)
Q Consensus 207 ~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~ 242 (276)
.+..-+.+..+|+ .++.+..+|.+++.|..+|+.+.
T Consensus 301 ~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 301 NEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred CCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 1112223334665 78889999999999999999863
No 385
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.56 E-value=0.019 Score=43.37 Aligned_cols=195 Identities=12% Similarity=0.064 Sum_probs=111.3
Q ss_pred ccccceeeccCCC-cEEEEEEcCCCCEEEEeecCC--eEEEEEccCCeeeeeeeeeee-ceEEEEEeccCCeEEEeccCC
Q 023822 23 SMEVGMSFRDYNG-RISSMDFHKSSSYLVTASDDE--SIRLYDVTAATCLKTINSKKY-GVDLVCFTSHPTTVIYSSKNG 98 (276)
Q Consensus 23 ~~~~~~~~~~h~~-~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~~ 98 (276)
.++.+.++..... -...+.|..++.++-+.+.-| .|+.+|+.+++......-... ---.++.. +++.....-.
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk-- 108 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWK-- 108 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESS--
T ss_pred eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEec--
Confidence 3455555543222 344688877788777777666 789999999987765543221 11223333 2233333334
Q ss_pred CCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe--ec-----CCCeeEecC
Q 023822 99 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--VQ-----GRPAAAYDD 171 (276)
Q Consensus 99 ~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~-----~~~~~~~~~ 171 (276)
++...+||..+.+.+.++. ..+.=+.++ .+++.|+.......|+.+|..+.+....+. .. ..+.+.+-
T Consensus 109 -~~~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i- 183 (264)
T PF05096_consen 109 -EGTGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI- 183 (264)
T ss_dssp -SSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-
T ss_pred -CCeEEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-
Confidence 8999999999988888775 345557776 467777777777889999988877666652 11 22334443
Q ss_pred CCcEEEEee-CCeEEEEecccCCCCCee----eee---e----cCCCCCceEEEECCCCcEEEEee
Q 023822 172 QGLVFAVAF-GGYIRMFDARKYEKGPFD----IFS---V----GGDISDANVVKFSNDGRLMLLTT 225 (276)
Q Consensus 172 ~~~~l~~~~-d~~i~~~d~~~~~~~~~~----~~~---~----~~~~~~i~~~~~~~~~~~l~~~~ 225 (276)
+|.+.|--. ...|...|..+++..... +.. . .....-.+.||+.|....|+..+
T Consensus 184 ~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 184 NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 566555555 677777777776521100 000 0 01134578899998765555444
No 386
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.56 E-value=0.0052 Score=48.10 Aligned_cols=139 Identities=17% Similarity=0.144 Sum_probs=78.8
Q ss_pred EEeccCCC-EEEEeeCCCeEEEEeccCceeeeeEeecCCCe-eEecCCCcEEEEeeCCeEEEEecccCCC-CCeeeeeec
Q 023822 127 LSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA-AAYDDQGLVFAVAFGGYIRMFDARKYEK-GPFDIFSVG 203 (276)
Q Consensus 127 ~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~d~~i~~~d~~~~~~-~~~~~~~~~ 203 (276)
..|.++.. ++.+--..+.|.-||..+++.........+.+ ......+.++++.. .+.+++.+.... .........
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~ 107 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDG 107 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCC
Confidence 35666666 44455557789999988665444333333444 34444555544433 345556543332 111111111
Q ss_pred CCCCCceEEEECCCCcEEEEeec-----------CCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822 204 GDISDANVVKFSNDGRLMLLTTM-----------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRV 271 (276)
Q Consensus 204 ~~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 271 (276)
......+.+...|+|.+.+.... -|.|+.+|. .+...+.+. .+-..-+.++||||++.|+.+..
T Consensus 108 ~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~---~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 108 LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD---DDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec---CcEEecCceEECCCCCEEEEEeC
Confidence 22346778899999987665433 133444443 566666665 34556678999999988877655
No 387
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.0011 Score=58.46 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=73.6
Q ss_pred CCEEEEeecCCeEEEEEccCC-eeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcce
Q 023822 46 SSYLVTASDDESIRLYDVTAA-TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV 124 (276)
Q Consensus 46 ~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i 124 (276)
+..++.|+..|.+...|+... .+...-..-.++|++++|+.+|..++.|-. +|.|.+||+..++..+.+..|..+.
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~---~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLG---DGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccC---CCcEEEEEccCCcceeeeeecCCcc
Confidence 456788888888888886542 111112233578999999999999999988 9999999999999988887776655
Q ss_pred EEEE---eccCCCEEEEeeCCCeEEEEecc
Q 023822 125 VSLS---LCSSKDCFISGSLDRTVLLWDQR 151 (276)
Q Consensus 125 ~~~~---~~~~~~~l~~~~~d~~i~iwd~~ 151 (276)
..+- +..++..++++...|. +|.+.
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 5443 4445567888887776 55543
No 388
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.00066 Score=59.72 Aligned_cols=104 Identities=14% Similarity=0.174 Sum_probs=74.2
Q ss_pred eEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822 167 AAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN 245 (276)
Q Consensus 167 ~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 245 (276)
++..-.+..++.++ .|.+...|+...-. + ...-..-..+|++++|+.+|+.++.|-.+|.|.+||+..++.++.+.
T Consensus 93 ~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~-~--~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~ 169 (1206)
T KOG2079|consen 93 ISSAIVVVPIVIGTSHGHVLLSDMTGNLG-P--LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT 169 (1206)
T ss_pred eeeeeeeeeEEEEcCchhhhhhhhhcccc-h--hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee
Confidence 33333445566666 58888888876311 1 22333445789999999999999999999999999999999999887
Q ss_pred cCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822 246 VKPVSRNSTLEASFSPEGMFVISGRVSP 273 (276)
Q Consensus 246 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg 273 (276)
.+......+..+.+..++..++++...|
T Consensus 170 e~~ap~t~vi~v~~t~~nS~llt~D~~G 197 (1206)
T KOG2079|consen 170 EHGAPVTGVIFVGRTSQNSKLLTSDTGG 197 (1206)
T ss_pred ecCCccceEEEEEEeCCCcEEEEccCCC
Confidence 5433334455556666677788877766
No 389
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.55 E-value=0.00041 Score=37.33 Aligned_cols=35 Identities=17% Similarity=0.114 Sum_probs=30.5
Q ss_pred CCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcE
Q 023822 205 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL 240 (276)
Q Consensus 205 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 240 (276)
....|..++|+|...+||.++.+|.|.+|.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3457899999999999999999999999998 5554
No 390
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.54 E-value=0.026 Score=44.09 Aligned_cols=226 Identities=10% Similarity=0.078 Sum_probs=105.7
Q ss_pred EEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeee---eeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC-Cc
Q 023822 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS---KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NK 112 (276)
Q Consensus 37 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~-~~ 112 (276)
..++.|..+ ..+++ +..+ +.+...+.|+.-..+.. -......+....++...+++ . .|.| |.... ++
T Consensus 64 l~~I~f~~~-~g~iv-G~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~-~---~G~i--y~T~DgG~ 134 (302)
T PF14870_consen 64 LNSISFDGN-EGWIV-GEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAG-D---RGAI--YRTTDGGK 134 (302)
T ss_dssp EEEEEEETT-EEEEE-EETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEE-T---T--E--EEESSTTS
T ss_pred EEEEEecCC-ceEEE-cCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEc-C---CCcE--EEeCCCCC
Confidence 567777643 34444 4555 33444444543333321 11223334443344333333 2 4443 33222 22
Q ss_pred e-eeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc--eeeeeEeecCCCeeEecCCCcEEEEeeCCeEEEEec
Q 023822 113 Y-LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE--KCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDA 189 (276)
Q Consensus 113 ~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~ 189 (276)
. ........+.+..+.-++++++++++.......-||--.. ++........+..+.|.|++.+..++..|.|++=+.
T Consensus 135 tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~ 214 (302)
T PF14870_consen 135 TWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDD 214 (302)
T ss_dssp SEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-
T ss_pred CeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccC
Confidence 2 2223344567888888999998888876666667775432 222222345567899999999988888899888872
Q ss_pred -ccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEE
Q 023822 190 -RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS 268 (276)
Q Consensus 190 -~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 268 (276)
...+.-.............+..++|.+++...++|+ .|.+ +.....|+.=+...........+..+.|.++.+-++.
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l 292 (302)
T PF14870_consen 215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL 292 (302)
T ss_dssp TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE
T ss_pred CCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE
Confidence 221110001111222333578899999988777665 4433 4555666655554422234566888898776555554
Q ss_pred ecCCCC
Q 023822 269 GRVSPF 274 (276)
Q Consensus 269 ~~~dg~ 274 (276)
| .+|.
T Consensus 293 G-~~G~ 297 (302)
T PF14870_consen 293 G-QDGV 297 (302)
T ss_dssp --STTE
T ss_pred C-CCcE
Confidence 4 4543
No 391
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.52 E-value=0.027 Score=43.94 Aligned_cols=153 Identities=12% Similarity=0.061 Sum_probs=79.5
Q ss_pred eeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEec-cC
Q 023822 74 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ-RA 152 (276)
Q Consensus 74 ~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~-~~ 152 (276)
...+.+..+.-++++++++++.. .....-||.-...-...-+.....|..|.|.|++.+.+.+ +.|.|+.=+. ..
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~---G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSR---GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDD 217 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETT---SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTE
T ss_pred CCcceeEeEEECCCCcEEEEECc---ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCC
Confidence 34467888888999999999875 4455577754322222233356789999999998765544 8888888772 22
Q ss_pred ceeeee--E----eecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec
Q 023822 153 EKCQGL--L----RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM 226 (276)
Q Consensus 153 ~~~~~~--~----~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 226 (276)
.+.-.. . ....+..+++.+++.+.+++..|.+. .....++.- ........-...+..+.|.+..+-++.| .
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW-~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~ 294 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTW-QKDRVGENVPSNLYRIVFVNPDKGFVLG-Q 294 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS--EE-GGGTTSSS---EEEEEETTEEEEE--S
T ss_pred ccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE-EeCCCCccc-eECccccCCCCceEEEEEcCCCceEEEC-C
Confidence 221111 1 22224578999999999998887544 333333321 1111122334567888888765655544 6
Q ss_pred CCcEEEE
Q 023822 227 EGHIHVL 233 (276)
Q Consensus 227 dg~i~i~ 233 (276)
+|.|.-|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 7876555
No 392
>PHA02713 hypothetical protein; Provisional
Probab=97.50 E-value=0.029 Score=48.16 Aligned_cols=205 Identities=8% Similarity=0.037 Sum_probs=97.5
Q ss_pred eEEEEEccCCeeee--eeeeeeeceEEEEEeccCCeEEEeccCC---CCCceEEEEccCCcee--eeecccCcceEEEEe
Q 023822 57 SIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYSSKNG---WDESLRLLSLHDNKYL--RYFKGHHDRVVSLSL 129 (276)
Q Consensus 57 ~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~~~---~d~~i~~~d~~~~~~~--~~~~~~~~~i~~~~~ 129 (276)
.+..||..+++... .+...... .+++ ..++...++|+... .-..+..||+.++.-. ..+....... +++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a-~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~- 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASA-IVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA- 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEE-EECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-
Confidence 46778887654322 22211111 1222 23566666666421 1245778888766422 1111111111 122
Q ss_pred ccCCCEEEEeeCCC-----eEEEEeccCceeee--eEeecCCCeeEecCCCcEEEEee-C--------------------
Q 023822 130 CSSKDCFISGSLDR-----TVLLWDQRAEKCQG--LLRVQGRPAAAYDDQGLVFAVAF-G-------------------- 181 (276)
Q Consensus 130 ~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~-d-------------------- 181 (276)
.-+++..+.|+.++ ++..||..+.+-.. .+........+..-++++++.|+ +
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccc
Confidence 23677888888754 47889988764332 11111111111223566666654 3
Q ss_pred ---CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC------CcEEEEECCC-CcEE--EEeecCCC
Q 023822 182 ---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME------GHIHVLDSFR-GTLL--STYNVKPV 249 (276)
Q Consensus 182 ---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~-~~~~--~~~~~~~~ 249 (276)
..+..||.++.+= .....+........ ++ .-+|+..+.|+.+ ..+..||..+ .+-. ..+. .
T Consensus 429 ~~~~~ve~YDP~td~W--~~v~~m~~~r~~~~-~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~---~ 501 (557)
T PHA02713 429 HSSNKVIRYDTVNNIW--ETLPNFWTGTIRPG-VV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE---S 501 (557)
T ss_pred cccceEEEECCCCCeE--eecCCCCcccccCc-EE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC---c
Confidence 2477788766321 00111111111111 22 2356766777654 2467899876 4433 2222 1
Q ss_pred CCCceEEEEECCCCcEEEEecCCCC
Q 023822 250 SRNSTLEASFSPEGMFVISGRVSPF 274 (276)
Q Consensus 250 ~~~~v~~~~~s~~g~~l~~~~~dg~ 274 (276)
.......+.+ +|+..++||.||.
T Consensus 502 ~r~~~~~~~~--~~~iyv~Gg~~~~ 524 (557)
T PHA02713 502 RLSALHTILH--DNTIMMLHCYESY 524 (557)
T ss_pred ccccceeEEE--CCEEEEEeeecce
Confidence 2222222232 7888999998873
No 393
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.43 E-value=0.032 Score=42.57 Aligned_cols=195 Identities=12% Similarity=0.163 Sum_probs=119.0
Q ss_pred eeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecc-cCcceEEEEeccCCCEEEEeeCCCeEEEEecc
Q 023822 73 NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKG-HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR 151 (276)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 151 (276)
.+....+.++.|+|+.+.|++... ...-.++=-..|+.+.++.- .-...-.+.+..++++.++--+++.+.++.+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n---~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTN---KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred ccccccccceeeCCCcceEEEecC---CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 344455999999999999998886 66666666667777776531 12223567777788777777778888888776
Q ss_pred Cceeeee-----E------e-ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCC-------CCCceE
Q 023822 152 AEKCQGL-----L------R-VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGD-------ISDANV 211 (276)
Q Consensus 152 ~~~~~~~-----~------~-~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~-------~~~i~~ 211 (276)
....... + + ..+...++|+|..+.+.... -+-+.+|.+..... .........+ -..+.+
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~-~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPS-SLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCc-ccccccccCcccccceEeecccc
Confidence 5422211 1 1 22344799999887777777 45666666653321 1111111111 135677
Q ss_pred EEECCC-CcEEEEeecCCcEEEEECCCCcEEEEeecCCC---CCC---ceEEEEECCCCcEEEEecCC
Q 023822 212 VKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV---SRN---STLEASFSPEGMFVISGRVS 272 (276)
Q Consensus 212 ~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~---~v~~~~~s~~g~~l~~~~~d 272 (276)
+.|++. +.+|+-+.+++.+.-.|. .|..+..+....+ ... ..-.++..++|.+.+++--+
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn 304 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDL-SGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN 304 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEec-CCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCC
Confidence 889875 556666667777777774 5555554432211 111 23467888888765554333
No 394
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.42 E-value=0.034 Score=47.77 Aligned_cols=209 Identities=14% Similarity=0.121 Sum_probs=103.9
Q ss_pred ccccceeeccCCCcEEEEEEcCCCCEEEEeecC------CeEEEEEccCCeeee--eeeeeeeceEEEEEeccCCeEEEe
Q 023822 23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDD------ESIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYS 94 (276)
Q Consensus 23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~ 94 (276)
.+.....+.... .-.+++.. ++...++|+.| .++..||..+.+-.. .+.......... .-++...++|
T Consensus 312 ~w~~~a~m~~~r-~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~--~l~g~iYavG 387 (571)
T KOG4441|consen 312 EWSSLAPMPSPR-CRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA--VLDGKLYAVG 387 (571)
T ss_pred cEeecCCCCccc-ccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE--EECCEEEEEe
Confidence 344444443222 23344444 35778888888 357788877665332 122111111122 2267777777
Q ss_pred ccCCC--CCceEEEEccCCcee--eeecccCcceEEEEeccCCCEEEEeeCCC------eEEEEeccCceeeeeEe--ec
Q 023822 95 SKNGW--DESLRLLSLHDNKYL--RYFKGHHDRVVSLSLCSSKDCFISGSLDR------TVLLWDQRAEKCQGLLR--VQ 162 (276)
Q Consensus 95 ~~~~~--d~~i~~~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~--~~ 162 (276)
+.++. -..+-.||..+.+-. ..+........... -++...++|+.++ ++..||..+.+-...-. ..
T Consensus 388 G~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~ 465 (571)
T KOG4441|consen 388 GFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR 465 (571)
T ss_pred ccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccc
Confidence 76321 134777887765422 22221111122222 2777888888654 57788887765443321 11
Q ss_pred CC-CeeEecCCCcEEEEee-CC-----eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC-----cE
Q 023822 163 GR-PAAAYDDQGLVFAVAF-GG-----YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-----HI 230 (276)
Q Consensus 163 ~~-~~~~~~~~~~~l~~~~-d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i 230 (276)
.. ..++.- ++.+++.|+ |+ .+..||.++.+= ............+..+.+ +++..++|+.|| +|
T Consensus 466 R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W--~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~v 540 (571)
T KOG4441|consen 466 RSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQW--TMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTV 540 (571)
T ss_pred cccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCce--eEcccCccccccccEEEE--CCEEEEEecccCcccccee
Confidence 11 123333 445555444 54 477888876431 111112222222222222 566777787776 47
Q ss_pred EEEECCCCcEEE
Q 023822 231 HVLDSFRGTLLS 242 (276)
Q Consensus 231 ~i~d~~~~~~~~ 242 (276)
..||..+.+-..
T Consensus 541 e~ydp~~d~W~~ 552 (571)
T KOG4441|consen 541 ECYDPETDTWTE 552 (571)
T ss_pred EEcCCCCCceee
Confidence 778776655443
No 395
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.41 E-value=0.034 Score=42.44 Aligned_cols=158 Identities=9% Similarity=0.096 Sum_probs=105.0
Q ss_pred ccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeee-eeceEEEEEeccCCeEEEeccCCCCCceEEEEcc
Q 023822 31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH 109 (276)
Q Consensus 31 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~ 109 (276)
.+-...|.++.|+|+.+.|++......-.|+=...|+.+.++.-. -.....+.+..++++.++--. ++.+.++.+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER---~~~l~~~~vd 158 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDER---DRALYLFTVD 158 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehh---cceEEEEEEc
Confidence 344556999999999998888777777777777789888887532 123456777767766666555 8888888776
Q ss_pred CCceeeee----------cccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceee------------eeEeecCCCee
Q 023822 110 DNKYLRYF----------KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ------------GLLRVQGRPAA 167 (276)
Q Consensus 110 ~~~~~~~~----------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~------------~~~~~~~~~~~ 167 (276)
....+..+ ...+...-.++|.|....|..+-+-.-+.||........ ..+....+..+
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 55322211 112556788999999998888888777777766533211 11123445677
Q ss_pred EecCC-CcEEEEee-CCeEEEEeccc
Q 023822 168 AYDDQ-GLVFAVAF-GGYIRMFDARK 191 (276)
Q Consensus 168 ~~~~~-~~~l~~~~-d~~i~~~d~~~ 191 (276)
.|++. +.+++.+. ++.+.-.|...
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCC
Confidence 77764 56666666 57777777654
No 396
>PHA03098 kelch-like protein; Provisional
Probab=97.37 E-value=0.056 Score=46.37 Aligned_cols=190 Identities=9% Similarity=0.059 Sum_probs=89.6
Q ss_pred CCCEEEEeecCC------eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCC--CCCceEEEEccCCceee-
Q 023822 45 SSSYLVTASDDE------SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG--WDESLRLLSLHDNKYLR- 115 (276)
Q Consensus 45 ~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~d~~i~~~d~~~~~~~~- 115 (276)
++..++.|+.++ .+..||..+.+....-.............-++..++.|+..+ .-..+..||..+++-..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 445666666432 467788776654221111111111112223566667776521 12457778877654221
Q ss_pred -eecccCcceEEEEeccCCCEEEEeeCC------CeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-C----
Q 023822 116 -YFKGHHDRVVSLSLCSSKDCFISGSLD------RTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-G---- 181 (276)
Q Consensus 116 -~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d---- 181 (276)
.+...... .+++ .-+++.++.|+.+ ..+..||..+.+-...- ........+...++++++.|. +
T Consensus 374 ~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 451 (534)
T PHA03098 374 PPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDN 451 (534)
T ss_pred CCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCC
Confidence 11111111 1122 2356777777742 45888998876543221 111111122233455555554 2
Q ss_pred ----CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC-----CcEEEEECCCCcE
Q 023822 182 ----GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTL 240 (276)
Q Consensus 182 ----~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~ 240 (276)
..+.+||..+.+=.. .............+.+ +++.++.|+.+ ..+.+||..+.+-
T Consensus 452 ~~~~~~v~~yd~~~~~W~~--~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 452 IKVYNIVESYNPVTNKWTE--LSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CcccceEEEecCCCCceee--CCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 138888887643111 1111111111122222 67777777654 4688888876654
No 397
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.34 E-value=0.062 Score=43.90 Aligned_cols=40 Identities=23% Similarity=0.428 Sum_probs=33.9
Q ss_pred CCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822 206 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN 245 (276)
Q Consensus 206 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 245 (276)
...+.+++.+|++++.|+...-|+|.++|+.++..++.++
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK 346 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK 346 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence 3456789999999988888777999999999988887776
No 398
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.31 E-value=0.00069 Score=49.20 Aligned_cols=127 Identities=13% Similarity=0.024 Sum_probs=72.3
Q ss_pred EEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCc-e
Q 023822 135 CFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDA-N 210 (276)
Q Consensus 135 ~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i-~ 210 (276)
.+..-+.||.|+-++++..+....- .... ....-....+++++.+|.|++|....... ....+. .....+ .
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~--~~v~~~~~~~~vG~~dg~v~~~n~n~~g~-~~d~~~--s~~e~i~~ 106 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG--QRVVTASAKLMVGTSDGAVYVFNWNLEGA-HSDRVC--SGEESIDL 106 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc--eeecccCceEEeecccceEEEecCCccch-HHHhhh--ccccccee
Confidence 3445566888888887754432211 1111 11122234556666699999998873221 000111 111122 2
Q ss_pred EEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCC-CceEEEEECCCCcEEEEe
Q 023822 211 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR-NSTLEASFSPEGMFVISG 269 (276)
Q Consensus 211 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~ 269 (276)
.+.--.++.+.+++..||.|+.|++...+.+.... .|. .++..+..+..+++++.+
T Consensus 107 ~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g---~h~~~~~e~~ivv~sd~~i~~a 163 (238)
T KOG2444|consen 107 GIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG---QHNFESGEELIVVGSDEFLKIA 163 (238)
T ss_pred ccccccccceeEEeccCCceeeeccccCceeeeec---cccCCCcceeEEecCCceEEee
Confidence 22223345688899999999999999888877666 454 555556666666666666
No 399
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.29 E-value=0.0011 Score=48.12 Aligned_cols=104 Identities=18% Similarity=0.265 Sum_probs=60.6
Q ss_pred CCEEEEeecCCeEEEEEccCC-eeeeeeeeeeeceEEEEE-eccCCeEEEeccCCCCCceEEEEccCCceeeeecccC-c
Q 023822 46 SSYLVTASDDESIRLYDVTAA-TCLKTINSKKYGVDLVCF-TSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH-D 122 (276)
Q Consensus 46 ~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~-~ 122 (276)
+..+++|+.+|.|.+|+..-. .....+......+-++-- ..++....+++. ++.|+.|++.-.+.+.....|. .
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~---dg~ir~~n~~p~k~~g~~g~h~~~ 146 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQ---DGRIRACNIKPNKVLGYVGQHNFE 146 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEecc---CCceeeeccccCceeeeeccccCC
Confidence 457889999999999987622 111111122222322222 223445666666 9999999998888777766666 3
Q ss_pred ceEEEEeccCCCEEEEe--eCCCeEEEEeccC
Q 023822 123 RVVSLSLCSSKDCFISG--SLDRTVLLWDQRA 152 (276)
Q Consensus 123 ~i~~~~~~~~~~~l~~~--~~d~~i~iwd~~~ 152 (276)
++........++.++.+ +.|..++.|++..
T Consensus 147 ~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 147 SGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 44444444444444444 5555555555543
No 400
>PHA02790 Kelch-like protein; Provisional
Probab=97.28 E-value=0.074 Score=44.91 Aligned_cols=186 Identities=8% Similarity=-0.058 Sum_probs=88.3
Q ss_pred CCCEEEEeecCC-----eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee--eee
Q 023822 45 SSSYLVTASDDE-----SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL--RYF 117 (276)
Q Consensus 45 ~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~--~~~ 117 (276)
++..++.|+.++ .+..||..+++....-.............-++...++|+..+ ...+..||..+++-. ..+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~-~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN-PTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC-CCceEEEECCCCeEEECCCC
Confidence 345567777543 466788776543222111111111111223666666766522 356788887655322 122
Q ss_pred cccCcceEEEEeccCCCEEEEeeCCC---eEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEeeCCeEEEEecccC
Q 023822 118 KGHHDRVVSLSLCSSKDCFISGSLDR---TVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKY 192 (276)
Q Consensus 118 ~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~ 192 (276)
.......... .-+++..+.|+.++ .+..||.++.+-...- ........+..-++++.+.| |.+.+||.++.
T Consensus 350 ~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp~~~ 425 (480)
T PHA02790 350 LKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCESSN 425 (480)
T ss_pred CCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecCCCC
Confidence 2111111112 23677778877653 4678888766443321 11111122223456666666 45678888653
Q ss_pred CCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC-----CcEEEEECCCCc
Q 023822 193 EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGT 239 (276)
Q Consensus 193 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 239 (276)
+ ......+.........+. -+|+..+.|+.+ ..+..||..+++
T Consensus 426 ~--W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 426 T--WTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred c--EeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 2 111111111111222222 366777777754 246666665543
No 401
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.27 E-value=0.12 Score=45.93 Aligned_cols=195 Identities=15% Similarity=0.156 Sum_probs=113.2
Q ss_pred CCEEEEeecCCeEEEEEccCCeeeeeeeeeeec--------eEEEEEec----------------cCCeEEEeccCCCCC
Q 023822 46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYG--------VDLVCFTS----------------HPTTVIYSSKNGWDE 101 (276)
Q Consensus 46 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~l~~~~~~~~d~ 101 (276)
+..|+.++.++.|.-.|..+|+.+-.+...... ...+.+.. .+..++.++. |+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~---Dg 270 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTS---DA 270 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecC---CC
Confidence 557777888899999999999988776543210 12233321 2347777776 99
Q ss_pred ceEEEEccCCceeeeecccCcceE-------------EEEecc--CCCEEEEeeC----------CCeEEEEeccCceee
Q 023822 102 SLRLLSLHDNKYLRYFKGHHDRVV-------------SLSLCS--SKDCFISGSL----------DRTVLLWDQRAEKCQ 156 (276)
Q Consensus 102 ~i~~~d~~~~~~~~~~~~~~~~i~-------------~~~~~~--~~~~l~~~~~----------d~~i~iwd~~~~~~~ 156 (276)
.+.-.|.++++....+.. .+.+. .+.-.| .+..+++++. +|.|+-+|.++++.+
T Consensus 271 ~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 999999999998876532 21110 111112 2345666643 688999999999877
Q ss_pred eeEeecC-----------------C---CeeEecCCCcEEEEee-------------------CCeEEEEecccCCCCCe
Q 023822 157 GLLRVQG-----------------R---PAAAYDDQGLVFAVAF-------------------GGYIRMFDARKYEKGPF 197 (276)
Q Consensus 157 ~~~~~~~-----------------~---~~~~~~~~~~~l~~~~-------------------d~~i~~~d~~~~~~~~~ 197 (276)
-.++... . ...+++++..++.... .+.|.-.|.++++..-
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W- 428 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERW- 428 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEE-
Confidence 6653210 0 1234444433333222 2345555555554311
Q ss_pred eeeeecCCC-------CCceEEEECC-CCc---EEEEeecCCcEEEEECCCCcEEEEeec
Q 023822 198 DIFSVGGDI-------SDANVVKFSN-DGR---LMLLTTMEGHIHVLDSFRGTLLSTYNV 246 (276)
Q Consensus 198 ~~~~~~~~~-------~~i~~~~~~~-~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~ 246 (276)
.+....|. .+..-+.+.. +|+ .++.++.+|.++++|.++|+.+...+.
T Consensus 429 -~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 429 -VFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred -EecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 11111111 1111122322 553 788899999999999999999877653
No 402
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.26 E-value=0.052 Score=44.07 Aligned_cols=142 Identities=14% Similarity=0.158 Sum_probs=78.2
Q ss_pred ceEEEEeccCCCEEEEee-----------CCC-eEEEEeccC--cee--eeeE--eecCCCeeEecCCCcEEEEeeCCeE
Q 023822 123 RVVSLSLCSSKDCFISGS-----------LDR-TVLLWDQRA--EKC--QGLL--RVQGRPAAAYDDQGLVFAVAFGGYI 184 (276)
Q Consensus 123 ~i~~~~~~~~~~~l~~~~-----------~d~-~i~iwd~~~--~~~--~~~~--~~~~~~~~~~~~~~~~l~~~~d~~i 184 (276)
....|+|.++|+++++-. ..+ .|.+++-.. ++. ...+ .......+++.+++ ++++. ...|
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~-~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVAT-PPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeC-CCeE
Confidence 456788999998776643 223 677776432 221 2222 23345678888998 55544 3445
Q ss_pred EEE-ecccCCC---CCeeeee-ecC----CCCCceEEEECCCCcEEEEeecC-------------------CcEEEEECC
Q 023822 185 RMF-DARKYEK---GPFDIFS-VGG----DISDANVVKFSNDGRLMLLTTME-------------------GHIHVLDSF 236 (276)
Q Consensus 185 ~~~-d~~~~~~---~~~~~~~-~~~----~~~~i~~~~~~~~~~~l~~~~~d-------------------g~i~i~d~~ 236 (276)
..| |...... ....+.. +.. +......++|.|||.+.++-+.. |.|.-++..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 444 5432111 1111211 222 13457789999999866654411 445556654
Q ss_pred CCcEEEEeecCCCCCCceEEEEECCCCcEEEEec
Q 023822 237 RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGR 270 (276)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 270 (276)
+++ +..+.. + -.....++|+|+|+++++-.
T Consensus 173 g~~-~e~~a~--G-~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 173 GGK-LRVVAH--G-FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCe-EEEEec--C-cCCCccceECCCCCEEEEcc
Confidence 433 333331 2 23456899999999877644
No 403
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.25 E-value=0.052 Score=41.29 Aligned_cols=146 Identities=14% Similarity=0.181 Sum_probs=96.9
Q ss_pred cceEEEEeccCCC-EEEEeeCCCe-EEEEeccCceeeeeEeecCCC----eeEecCCCcEEEEee-C-----CeEEEEec
Q 023822 122 DRVVSLSLCSSKD-CFISGSLDRT-VLLWDQRAEKCQGLLRVQGRP----AAAYDDQGLVFAVAF-G-----GYIRMFDA 189 (276)
Q Consensus 122 ~~i~~~~~~~~~~-~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~-d-----~~i~~~d~ 189 (276)
..-..|+++|... -++.+-+-|+ ..++|....+....+....-+ .-.|+|+|.+|.... | |-|-+||.
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEec
Confidence 3345677887554 4556666665 568898887776666332222 457999999998887 2 78999999
Q ss_pred ccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec------C------------CcEEEEECCCCcEEEEeecC-CCC
Q 023822 190 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM------E------------GHIHVLDSFRGTLLSTYNVK-PVS 250 (276)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d------------g~i~i~d~~~~~~~~~~~~~-~~~ 250 (276)
+..- ..+-.+..|.-....+.+.+||+.++.+.. | -++.+.|..+|+++.+.... ..+
T Consensus 148 r~~f---qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~ 224 (366)
T COG3490 148 REGF---QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLR 224 (366)
T ss_pred cccc---ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhh
Confidence 8532 224445566666778999999998887642 1 13555666677766554422 124
Q ss_pred CCceEEEEECCCCcEEEEec
Q 023822 251 RNSTLEASFSPEGMFVISGR 270 (276)
Q Consensus 251 ~~~v~~~~~s~~g~~l~~~~ 270 (276)
...|..++..+||+.++.+-
T Consensus 225 ~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 225 QLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred hcceeeeeeCCCCcEEEEEE
Confidence 56788899999998776553
No 404
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.04 Score=39.86 Aligned_cols=180 Identities=16% Similarity=0.153 Sum_probs=100.0
Q ss_pred cCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEE-EeeCCCeEEEEeccCceeeeeEeecC-C
Q 023822 87 HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDRTVLLWDQRAEKCQGLLRVQG-R 164 (276)
Q Consensus 87 ~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~-~ 164 (276)
++..+.+.+.-+ ...|++||+.+++.+..-+-....+..=-...-++.+. -.=.+|.-..+|.++-+++..+.-.+ -
T Consensus 55 ~g~i~esTG~yg-~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYG-FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccc-cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 444455544423 67899999999887665432212221111111223222 23347888899999888877763322 2
Q ss_pred CeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCC-CCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEE
Q 023822 165 PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST 243 (276)
Q Consensus 165 ~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 243 (276)
..++.... .++.+.....++.-|.++............+. -..++.+.|- +|...|-.-.+..|...+..+|+.+..
T Consensus 134 WgLt~d~~-~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~w 211 (262)
T COG3823 134 WGLTSDDK-NLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAW 211 (262)
T ss_pred eeeecCCc-ceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEE
Confidence 23333322 34444446778888887765433223332222 1233444543 566555555666777778888888776
Q ss_pred eecCC---------CCCCceEEEEECCCC-cEEEEe
Q 023822 244 YNVKP---------VSRNSTLEASFSPEG-MFVISG 269 (276)
Q Consensus 244 ~~~~~---------~~~~~v~~~~~s~~g-~~l~~~ 269 (276)
+.... .+..-.+.+++.|++ +++++|
T Consensus 212 idlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 212 IDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 65221 234567889999988 555555
No 405
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.061 Score=46.28 Aligned_cols=181 Identities=12% Similarity=0.107 Sum_probs=96.5
Q ss_pred CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeee-e--cccCcceEEEEeccC
Q 023822 56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY-F--KGHHDRVVSLSLCSS 132 (276)
Q Consensus 56 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~-~--~~~~~~i~~~~~~~~ 132 (276)
..|+||+. +|+.+..+.-...++-.+.|+.+...+++ .. +|.+++|++........ . ......|..+.+..+
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v-~k---~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~ 138 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICV-QK---DGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHN 138 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEE-ec---cceEEEeecchhhhcccccccccccCceeEEEEecC
Confidence 45888886 57777776655668999999977665555 44 99999999854322110 1 222334555555555
Q ss_pred CCEEEEeeCCCeEEEEeccCceeeeeE---eecCC--CeeEecCCCcEEEEee--C--CeEEEEecccCCCCCeeeeeec
Q 023822 133 KDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGR--PAAAYDDQGLVFAVAF--G--GYIRMFDARKYEKGPFDIFSVG 203 (276)
Q Consensus 133 ~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~--~~~~~~~~~~~l~~~~--d--~~i~~~d~~~~~~~~~~~~~~~ 203 (276)
| ++.-..+|.+.+-+-........+ +.... .+-...+++......- + --..++-.... ......+.
T Consensus 139 G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~---~~q~~~~~ 213 (829)
T KOG2280|consen 139 G--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEES---RVQLHALS 213 (829)
T ss_pred c--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecc---cccccccC
Confidence 5 344444555544322111111111 11111 1222222221111111 1 00111111111 11122233
Q ss_pred CCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeec
Q 023822 204 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV 246 (276)
Q Consensus 204 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 246 (276)
.....+..+..||+.++|+-=..+|.|.+-+....+.+..+..
T Consensus 214 ~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~ 256 (829)
T KOG2280|consen 214 WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC 256 (829)
T ss_pred CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence 3345678899999999999999999999998887777766653
No 406
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.12 E-value=0.18 Score=44.95 Aligned_cols=149 Identities=15% Similarity=0.182 Sum_probs=97.0
Q ss_pred EEEEEEcCC-CCEEEEee----------cCCeEEEEEccCCeeeeeeeeee--eceEEEEEeccCCeEEEeccCCCCCce
Q 023822 37 ISSMDFHKS-SSYLVTAS----------DDESIRLYDVTAATCLKTINSKK--YGVDLVCFTSHPTTVIYSSKNGWDESL 103 (276)
Q Consensus 37 v~~~~~~~~-~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~~d~~i 103 (276)
|.++.|..| +.++++|. ..|.|.++.....+.+.....+. +.+.++..- +++.++.- +..|
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~I-----n~~v 850 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAGI-----NQSV 850 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEec-----CcEE
Confidence 445557776 66777775 24778888877644444433332 233333321 55555443 7799
Q ss_pred EEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce--eeeeE---eecCCCeeEecCCCcEEEE
Q 023822 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK--CQGLL---RVQGRPAAAYDDQGLVFAV 178 (276)
Q Consensus 104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~---~~~~~~~~~~~~~~~~l~~ 178 (276)
++|++.+.+.++.-..+..++..+...-.++.++.|..-+++.+.-.+..+ ....- +......+.+-.+..++.+
T Consensus 851 rLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylga 930 (1096)
T KOG1897|consen 851 RLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGA 930 (1096)
T ss_pred EEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEee
Confidence 999999988777777788899999999899999999988887766555443 22222 3344455666666666666
Q ss_pred eeCCeEEEEeccc
Q 023822 179 AFGGYIRMFDARK 191 (276)
Q Consensus 179 ~~d~~i~~~d~~~ 191 (276)
-.+|.+.+....+
T Consensus 931 e~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 931 ENSGNLFTVRKDS 943 (1096)
T ss_pred cccccEEEEEecC
Confidence 6678777765543
No 407
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.09 E-value=0.1 Score=41.70 Aligned_cols=237 Identities=15% Similarity=0.148 Sum_probs=118.6
Q ss_pred cEEEEEEcCCCCEEEEeecCCeEEEEEccCCee---eeee----eeeeeceEEEEEecc---CCeEEEeccC----C--C
Q 023822 36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATC---LKTI----NSKKYGVDLVCFTSH---PTTVIYSSKN----G--W 99 (276)
Q Consensus 36 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~l~~~~~~----~--~ 99 (276)
.-+.|+|.|||++|++ ...|.|++++ ..+.. +..+ .........++++|+ +.+|.+.... . .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999877665 5699999999 44443 2222 123456789999994 3444443320 0 0
Q ss_pred CCceEEEEccCC-------cee-eeecc---cCcceEEEEeccCCCEEEEeeCC-------------CeEEEEeccCcee
Q 023822 100 DESLRLLSLHDN-------KYL-RYFKG---HHDRVVSLSLCSSKDCFISGSLD-------------RTVLLWDQRAEKC 155 (276)
Q Consensus 100 d~~i~~~d~~~~-------~~~-~~~~~---~~~~i~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~ 155 (276)
...|.-|....+ +.+ ..+.. ....-..|.|.||+.++++.+.. |.|.-.+....-.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 124444544433 111 11111 12234679999999866665543 2333333221100
Q ss_pred -----------eeeE---eecCCCeeEecCC-CcEEEEee--CCeEEEEecccCCC----------C-------------
Q 023822 156 -----------QGLL---RVQGRPAAAYDDQ-GLVFAVAF--GGYIRMFDARKYEK----------G------------- 195 (276)
Q Consensus 156 -----------~~~~---~~~~~~~~~~~~~-~~~l~~~~--d~~i~~~d~~~~~~----------~------------- 195 (276)
...+ -......++|+|. +.++++-. +..=.+.-++.+.. .
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 0011 1111226889998 77776654 32222222222210 0
Q ss_pred --CeeeeeecCCCCCceEEEECC-------CCcEEEEeecCCcEEEEECCCCcEEEEe-ecCCCCCCceEEEEECCCCcE
Q 023822 196 --PFDIFSVGGDISDANVVKFSN-------DGRLMLLTTMEGHIHVLDSFRGTLLSTY-NVKPVSRNSTLEASFSPEGMF 265 (276)
Q Consensus 196 --~~~~~~~~~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~ 265 (276)
......+..| ..+..+.|.. .|.++++.-..+.|....+..+..+... .........+.++++.|||.+
T Consensus 241 ~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~L 319 (331)
T PF07995_consen 241 GFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGAL 319 (331)
T ss_dssp TS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEE
T ss_pred CcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeE
Confidence 0011222222 4455666653 3456666555677888887655433222 211234458999999999999
Q ss_pred EEEecCCCCC
Q 023822 266 VISGRVSPFS 275 (276)
Q Consensus 266 l~~~~~dg~v 275 (276)
+++.+.+|.+
T Consensus 320 yv~~d~~G~i 329 (331)
T PF07995_consen 320 YVSDDSDGKI 329 (331)
T ss_dssp EEEE-TTTTE
T ss_pred EEEECCCCeE
Confidence 9988877754
No 408
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=97.07 E-value=0.022 Score=46.75 Aligned_cols=135 Identities=7% Similarity=0.053 Sum_probs=88.4
Q ss_pred CCCE-EEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCC--------cEEEEeeCCeEEEEecccCCCCCeeeeee
Q 023822 132 SKDC-FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG--------LVFAVAFGGYIRMFDARKYEKGPFDIFSV 202 (276)
Q Consensus 132 ~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------~~l~~~~d~~i~~~d~~~~~~~~~~~~~~ 202 (276)
+.++ +..+.....++-.|++.++.+.....+.-..+.|.|.. .-|++-++..|.-.|.+.... .+.....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN-Ki~v~es 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN-KIKVVES 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCC-ceeeeee
Confidence 4443 34555567788889999999988866665578888753 456666788888888876442 1112111
Q ss_pred c--CCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822 203 G--GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRV 271 (276)
Q Consensus 203 ~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 271 (276)
. .......+..-.. ..|+|+++..|-|++||--.-.....+. +....|..+..+.+|+++++.+.
T Consensus 557 KdY~tKn~Fss~~tTe-sGyIa~as~kGDirLyDRig~rAKtalP---~lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 557 KDYKTKNKFSSGMTTE-SGYIAAASRKGDIRLYDRIGKRAKTALP---GLGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred hhcccccccccccccc-CceEEEecCCCceeeehhhcchhhhcCc---ccccceeeeEeecCCcEEEEeec
Confidence 1 1112233333333 3589999999999999954333333344 67788999999999998776554
No 409
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=97.00 E-value=0.069 Score=45.90 Aligned_cols=110 Identities=13% Similarity=0.111 Sum_probs=72.8
Q ss_pred ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeec-ccCcceEEEEec--cCCCEEEEeeCCCeEEEEecc---
Q 023822 78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK-GHHDRVVSLSLC--SSKDCFISGSLDRTVLLWDQR--- 151 (276)
Q Consensus 78 ~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~l~~~~~d~~i~iwd~~--- 151 (276)
...-+.-+.-++..++-.. ...+.|||.+.+.....-. ...+.|.++.|. |+++.+++.+..+.|.+|--.
T Consensus 31 ~~~li~gss~~k~a~V~~~---~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSS---RSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CcceEeecccCcEEEEECC---CCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 3444555554554444443 6789999998876433221 357789999996 688888888889999988532
Q ss_pred ------CceeeeeE-----eecCCCeeEecCCCcEEEEeeCCeEEEEeccc
Q 023822 152 ------AEKCQGLL-----RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191 (276)
Q Consensus 152 ------~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~ 191 (276)
+...++.+ ..+++....|.++|.+++++ ++++.++|-.-
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~~ 157 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDKWL 157 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECCCc
Confidence 11223333 34567788999998876655 57788887543
No 410
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.077 Score=38.46 Aligned_cols=174 Identities=11% Similarity=-0.002 Sum_probs=88.7
Q ss_pred CCCEEEEeecC--CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCc
Q 023822 45 SSSYLVTASDD--ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHD 122 (276)
Q Consensus 45 ~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 122 (276)
+|.++.+.+.- ..|++||+.+++.+....-....+..=-...-+.++..-.-. ++.-..+|.++-+.+..+. .++
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~--egvaf~~d~~t~~~lg~~~-y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWK--EGVAFKYDADTLEELGRFS-YEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEec--cceeEEEChHHhhhhcccc-cCC
Confidence 45566666543 479999999998876654332122211111123333332221 8888899998887766654 334
Q ss_pred ceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCC-----CeeEecCCCcEEEEee-CCeEEEEecccCCC
Q 023822 123 RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGR-----PAAAYDDQGLVFAVAF-GGYIRMFDARKYEK 194 (276)
Q Consensus 123 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~-----~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~ 194 (276)
.=+.++- |+..|+.++...+++.-|.++......+ ...++ +.+.|- +|.+++--. +..|...|..+++.
T Consensus 132 eGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 132 EGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred cceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 4455543 5555666665667777776655444333 11111 122221 333333322 33444444444331
Q ss_pred C--------CeeeeeecCCCCCceEEEECCCC-cEEEEe
Q 023822 195 G--------PFDIFSVGGDISDANVVKFSNDG-RLMLLT 224 (276)
Q Consensus 195 ~--------~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~ 224 (276)
. .........+..-.+.+++.|++ +++++|
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 0 00011112234467789999987 555555
No 411
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.03 Score=50.30 Aligned_cols=141 Identities=11% Similarity=0.051 Sum_probs=89.8
Q ss_pred ceEEEEeccCCCEEE--EeeCCCeEEEEeccCceeee-----eE--------eecCCCeeEecCCC--cEEEEeeCCeEE
Q 023822 123 RVVSLSLCSSKDCFI--SGSLDRTVLLWDQRAEKCQG-----LL--------RVQGRPAAAYDDQG--LVFAVAFGGYIR 185 (276)
Q Consensus 123 ~i~~~~~~~~~~~l~--~~~~d~~i~iwd~~~~~~~~-----~~--------~~~~~~~~~~~~~~--~~l~~~~d~~i~ 185 (276)
++..+...+|+...+ ..+.+-.|..||+++-.... .+ ...-..++.|+|.- ..++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 455566666765433 33334478999988543211 11 11223467787754 445555589998
Q ss_pred EEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCC-CCceEEEEECCCCc
Q 023822 186 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS-RNSTLEASFSPEGM 264 (276)
Q Consensus 186 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~ 264 (276)
+..+..... ......-....++++|+|.|+.++.|-..|++.-|.. .++....+...+.. ...|.+|+|-..-.
T Consensus 182 V~~~~~~~~----~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 182 VKSTKQLAQ----NVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhhhhh----hhcccCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEeccee
Confidence 887765332 1111123346889999999999999999999999874 55655555543333 37899999988877
Q ss_pred EEEE
Q 023822 265 FVIS 268 (276)
Q Consensus 265 ~l~~ 268 (276)
+|++
T Consensus 257 flvv 260 (1405)
T KOG3630|consen 257 FLVV 260 (1405)
T ss_pred EEEE
Confidence 7765
No 412
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.80 E-value=0.15 Score=39.02 Aligned_cols=148 Identities=16% Similarity=0.101 Sum_probs=89.8
Q ss_pred ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEe-ccCceee
Q 023822 78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD-QRAEKCQ 156 (276)
Q Consensus 78 ~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd-~~~~~~~ 156 (276)
.+...+++++++.++..........+.++.. +....... ....+....|++++...+....+...+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 6889999999998877762111445555543 33333322 223678889999987666666566666663 2332222
Q ss_pred e-eE---eec-CCCeeEecCCCcEEEEee----CCeEEEEecccCCCC-Ceee----eeecCCCCCceEEEECCCCcEEE
Q 023822 157 G-LL---RVQ-GRPAAAYDDQGLVFAVAF----GGYIRMFDARKYEKG-PFDI----FSVGGDISDANVVKFSNDGRLML 222 (276)
Q Consensus 157 ~-~~---~~~-~~~~~~~~~~~~~l~~~~----d~~i~~~d~~~~~~~-~~~~----~~~~~~~~~i~~~~~~~~~~~l~ 222 (276)
. .. ... .+..+.++|||.-++.-. ++.|.+--+...... +... .........+..+.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 1 12 122 678999999997666555 688888876543332 1111 11112345789999999998777
Q ss_pred EeecCC
Q 023822 223 LTTMEG 228 (276)
Q Consensus 223 ~~~~dg 228 (276)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 765443
No 413
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.79 E-value=0.22 Score=40.63 Aligned_cols=186 Identities=12% Similarity=0.079 Sum_probs=92.0
Q ss_pred EEEcCCCCEEEEee--c----CCeEEEEEccCCeeeeeeeeee---eceEEEEEeccCCeEEEeccC-------------
Q 023822 40 MDFHKSSSYLVTAS--D----DESIRLYDVTAATCLKTINSKK---YGVDLVCFTSHPTTVIYSSKN------------- 97 (276)
Q Consensus 40 ~~~~~~~~~l~~~~--~----d~~i~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~------------- 97 (276)
+..-|+|+.++++- . -|-+.+.|-++.+......... .--....|.|..+.++++.-.
T Consensus 135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d 214 (461)
T PF05694_consen 135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPED 214 (461)
T ss_dssp EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTT
T ss_pred eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhH
Confidence 34456888777652 2 2467888887777776665432 234677888888888776432
Q ss_pred ----CCCCceEEEEccCCceeeeecccC--cceEEEEecc--CCCE-EEEeeCCCeEEEEec-cCcee----eeeEe---
Q 023822 98 ----GWDESLRLLSLHDNKYLRYFKGHH--DRVVSLSLCS--SKDC-FISGSLDRTVLLWDQ-RAEKC----QGLLR--- 160 (276)
Q Consensus 98 ----~~d~~i~~~d~~~~~~~~~~~~~~--~~i~~~~~~~--~~~~-l~~~~~d~~i~iwd~-~~~~~----~~~~~--- 160 (276)
.+..++.+||+.+.+.++++.--. .....+.|.. +..+ |+.+-...+|..|-- +.++- +..+.
T Consensus 215 ~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~ 294 (461)
T PF05694_consen 215 LEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK 294 (461)
T ss_dssp HHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred hhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence 126789999999999999886432 2355677754 3443 444444556655543 33321 11111
Q ss_pred ----------------ecCCCeeEecCCCcEEEEee--CCeEEEEecccCCCCCeeee-eecC--------------CCC
Q 023822 161 ----------------VQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIF-SVGG--------------DIS 207 (276)
Q Consensus 161 ----------------~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~-~~~~--------------~~~ 207 (276)
..-+..+.++.|.++|.++. .|.|+.||+.....+.+.-. .+.+ -.+
T Consensus 295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~G 374 (461)
T PF05694_consen 295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRG 374 (461)
T ss_dssp --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S
T ss_pred cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCC
Confidence 11245788999999999888 89999999988665332211 1111 112
Q ss_pred CceEEEECCCCcEEEEee
Q 023822 208 DANVVKFSNDGRLMLLTT 225 (276)
Q Consensus 208 ~i~~~~~~~~~~~l~~~~ 225 (276)
...-+..|-||+.|+..+
T Consensus 375 gPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 375 GPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ----EEE-TTSSEEEEE-
T ss_pred CCCeEEEccCCeEEEEEe
Confidence 346688999998887764
No 414
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.79 E-value=0.22 Score=40.56 Aligned_cols=140 Identities=14% Similarity=0.105 Sum_probs=77.8
Q ss_pred CcEEEEEEcCCCCEEEEee-----------cCC-eEEEEEccC--Ce--eeeeeeeeeeceEEEEEeccCCeEEEeccCC
Q 023822 35 GRISSMDFHKSSSYLVTAS-----------DDE-SIRLYDVTA--AT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNG 98 (276)
Q Consensus 35 ~~v~~~~~~~~~~~l~~~~-----------~d~-~i~iwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 98 (276)
.....|+|.++|+++++-. ..+ .|.+++-.+ |+ ....+...-.....+++.+++ ++++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~-- 89 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATP-- 89 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCC--
Confidence 3456799999999777643 223 677776432 32 223333223346788998888 444443
Q ss_pred CCCceEEE-EccCC-----ce--e-eeecc----cCcceEEEEeccCCCEEEEeeCC-------------------CeEE
Q 023822 99 WDESLRLL-SLHDN-----KY--L-RYFKG----HHDRVVSLSLCSSKDCFISGSLD-------------------RTVL 146 (276)
Q Consensus 99 ~d~~i~~~-d~~~~-----~~--~-~~~~~----~~~~i~~~~~~~~~~~l~~~~~d-------------------~~i~ 146 (276)
. .|..+ |.... +. + ..+.. +......++|.|||.+.++-+.. |.|.
T Consensus 90 -~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 90 -P-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred -C-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEE
Confidence 3 44444 44321 11 1 11221 12346789999999866654421 4455
Q ss_pred EEeccCceeeeeE-eecCCCeeEecCCCcEEEEee
Q 023822 147 LWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF 180 (276)
Q Consensus 147 iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~ 180 (276)
-+|....+....- .......++|++++.++++-.
T Consensus 168 r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 168 RYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred EEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 6665554432211 222245799999998887655
No 415
>PHA03098 kelch-like protein; Provisional
Probab=96.76 E-value=0.16 Score=43.62 Aligned_cols=145 Identities=10% Similarity=0.085 Sum_probs=68.5
Q ss_pred CCCEEEEeecC-----CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCC---CceEEEEccCCceee-
Q 023822 45 SSSYLVTASDD-----ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD---ESLRLLSLHDNKYLR- 115 (276)
Q Consensus 45 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d---~~i~~~d~~~~~~~~- 115 (276)
++...+.|+.+ ..+..||..+.+....-..............+++..+.|+....+ ..+..||+.+++-..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 56677777765 346778877654322111111111111122356666666632111 468889987654322
Q ss_pred -eecccCcceEEEEeccCCCEEEEeeCC--------CeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-C--
Q 023822 116 -YFKGHHDRVVSLSLCSSKDCFISGSLD--------RTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-G-- 181 (276)
Q Consensus 116 -~~~~~~~~i~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d-- 181 (276)
.+...... .++ ...++..++.|+.+ ..+.+||..+.+-...- ...........-++++++.|. +
T Consensus 422 ~~~p~~r~~-~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~ 499 (534)
T PHA03098 422 SPLPISHYG-GCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYE 499 (534)
T ss_pred CCCCccccC-ceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCC
Confidence 11111111 122 22356667777643 23888998876543221 111111111122566666554 2
Q ss_pred ---CeEEEEeccc
Q 023822 182 ---GYIRMFDARK 191 (276)
Q Consensus 182 ---~~i~~~d~~~ 191 (276)
+.+.+||..+
T Consensus 500 ~~~~~v~~yd~~~ 512 (534)
T PHA03098 500 YYINEIEVYDDKT 512 (534)
T ss_pred cccceeEEEeCCC
Confidence 3677777765
No 416
>PRK13684 Ycf48-like protein; Provisional
Probab=96.75 E-value=0.21 Score=40.00 Aligned_cols=146 Identities=13% Similarity=0.108 Sum_probs=80.9
Q ss_pred CcceEEEEeccCCCEEEEeeCCCeEEE-EeccCceeeeeE---eecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCC
Q 023822 121 HDRVVSLSLCSSKDCFISGSLDRTVLL-WDQRAEKCQGLL---RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGP 196 (276)
Q Consensus 121 ~~~i~~~~~~~~~~~l~~~~~d~~i~i-wd~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~ 196 (276)
...+..+.+.|++.+++++. .|.+.. +|- .++.-... ....+..+.+.+++.+++++..|.+++=....+..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccc
Confidence 45688899999886665554 555443 221 11211112 3345667889999998888888876542233322211
Q ss_pred eeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEec
Q 023822 197 FDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGR 270 (276)
Q Consensus 197 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 270 (276)
............+..+.+.|++..++ ++.+|.+. .....++.-.............+.+.|..+++.+++|.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence 00100011223577889999887555 44667554 34455555444331112334678888887777766553
No 417
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.66 E-value=3.4e-05 Score=61.89 Aligned_cols=143 Identities=8% Similarity=0.079 Sum_probs=95.5
Q ss_pred CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822 35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL 114 (276)
Q Consensus 35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~ 114 (276)
..-....|-|++.-++.++.+..+..||- .++...... ..+....++|..++..+++.... .+.+.+||+.+....
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek--~~piylwd~n~eytq 110 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEK--TGPIYLWDVNSEYTQ 110 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhc--CCCeeechhhhhhHH
Confidence 33445678887777998889989999984 344433332 34456778888888877776653 899999999875432
Q ss_pred eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEeeC
Q 023822 115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAFG 181 (276)
Q Consensus 115 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~d 181 (276)
+.-.+-...-.-+.|++....++.+...|.+.+++..+.+.+... +...+.++++.+.+..+..+.|
T Consensus 111 qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd 179 (615)
T KOG2247|consen 111 QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCD 179 (615)
T ss_pred HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcH
Confidence 211111111122678888888888888999999998876655444 4555667777777665555443
No 418
>PRK13684 Ycf48-like protein; Provisional
Probab=96.55 E-value=0.3 Score=39.15 Aligned_cols=148 Identities=10% Similarity=0.097 Sum_probs=85.1
Q ss_pred CCcEEEEEEcCCCCEEEEeecCCeEEE-EEccCCeeeeee-eeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC
Q 023822 34 NGRISSMDFHKSSSYLVTASDDESIRL-YDVTAATCLKTI-NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN 111 (276)
Q Consensus 34 ~~~v~~~~~~~~~~~l~~~~~d~~i~i-wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~ 111 (276)
.+.+.++.+.|++.+++++ ..|.+.. ++ ..++..... ......+..+.+.++++.++++. .|.+.+=..+.+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~----~G~~~~~s~d~G 245 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR----GGQIRFNDPDDL 245 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEec----CCEEEEccCCCC
Confidence 3568889999988776665 4465543 22 222222222 23345788999999988777664 666543233333
Q ss_pred ceeeeecc----cCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee-----cCCCeeEecCCCcEEEEeeCC
Q 023822 112 KYLRYFKG----HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV-----QGRPAAAYDDQGLVFAVAFGG 182 (276)
Q Consensus 112 ~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~d~ 182 (276)
..-..... ....+..+.+.+++..++ ++.+|.+.. ....++.-..... .....+.+..+++.++++..|
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G 323 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRG 323 (334)
T ss_pred CccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCc
Confidence 32221111 123477888998777555 455675543 3343333222211 123456777788888998889
Q ss_pred eEEEEec
Q 023822 183 YIRMFDA 189 (276)
Q Consensus 183 ~i~~~d~ 189 (276)
.|..|+-
T Consensus 324 ~il~~~~ 330 (334)
T PRK13684 324 VLLRYVG 330 (334)
T ss_pred eEEEecC
Confidence 8887764
No 419
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.51 E-value=0.13 Score=43.20 Aligned_cols=140 Identities=7% Similarity=0.020 Sum_probs=82.0
Q ss_pred cceEEEEeccCCCEE-EEee--CCCeEEEEeccCceeeeeEeecCCCeeEecCCC-----cEEEEeeCCeEEEEecccCC
Q 023822 122 DRVVSLSLCSSKDCF-ISGS--LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG-----LVFAVAFGGYIRMFDARKYE 193 (276)
Q Consensus 122 ~~i~~~~~~~~~~~l-~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~d~~i~~~d~~~~~ 193 (276)
-++..++|. ||+.+ ++.- .+|.+++=|- +.+. +...+..+.|.|-+ .+||+-....|.+|.+....
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viG--qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIG--QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST 93 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEee--ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence 357888996 55543 3332 2333333221 1122 33456678888753 68888889999999986322
Q ss_pred --CCCeeeeeecCC--CCC--ceEEEECCCCcEEEEeecCCcEEEEECCC--CcEEEEeecCCCCCCceEEEEECCCCcE
Q 023822 194 --KGPFDIFSVGGD--ISD--ANVVKFSNDGRLMLLTTMEGHIHVLDSFR--GTLLSTYNVKPVSRNSTLEASFSPEGMF 265 (276)
Q Consensus 194 --~~~~~~~~~~~~--~~~--i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 265 (276)
.........-.. .-+ ...+.|+|....|++-.....=.++++.. ......+. ..+-|.+.+|.+||++
T Consensus 94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~----~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK----TSGLIHCACWTKDGQR 169 (671)
T ss_pred cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc----CCceEEEEEecCcCCE
Confidence 111111111111 111 24588999988887765544434555543 33333443 6789999999999998
Q ss_pred EEEecC
Q 023822 266 VISGRV 271 (276)
Q Consensus 266 l~~~~~ 271 (276)
|+++-.
T Consensus 170 LVVAvG 175 (671)
T PF15390_consen 170 LVVAVG 175 (671)
T ss_pred EEEEeC
Confidence 877643
No 420
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.47 E-value=0.17 Score=43.62 Aligned_cols=103 Identities=9% Similarity=0.114 Sum_probs=68.4
Q ss_pred eeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEEC--CCCcEEEEeecCCcEEEEECC------
Q 023822 166 AAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS--NDGRLMLLTTMEGHIHVLDSF------ 236 (276)
Q Consensus 166 ~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i~d~~------ 236 (276)
.+.-+.-+++.++.. ...+.+||.+.... ...........|..+.|. |+|+.+++.+....|.+|--.
T Consensus 34 li~gss~~k~a~V~~~~~~LtIWD~~~~~l---E~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSSRSELTIWDTRSGVL---EYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred eEeecccCcEEEEECCCCEEEEEEcCCcEE---EEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 444455666666655 57899999987552 122222445688888876 688989888899999998531
Q ss_pred ---CCcEEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822 237 ---RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRV 271 (276)
Q Consensus 237 ---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 271 (276)
+...+..+....-...+|.+..|.++|.+++.++.
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN 148 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN 148 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC
Confidence 22344444433223468999999999987766553
No 421
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.37 E-value=0.66 Score=41.15 Aligned_cols=94 Identities=7% Similarity=0.037 Sum_probs=54.1
Q ss_pred CCcEEEEEEcCCCCEEEEeecCCeEEEEEccC-CeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc
Q 023822 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 112 (276)
Q Consensus 34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~ 112 (276)
.-.|..+.+||+|.+||..|..| |.|-.+.. ......+......+.|-.+.-+..++
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~--------------------- 141 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF--------------------- 141 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhc---------------------
Confidence 34688899999999999888765 55544432 11111222222223332222111111
Q ss_pred eeeeecccCcceEEEEeccC---CCEEEEeeCCCeEEEEeccCc
Q 023822 113 YLRYFKGHHDRVVSLSLCSS---KDCFISGSLDRTVLLWDQRAE 153 (276)
Q Consensus 113 ~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~ 153 (276)
...+...|..+.|+|. +..|+.-..|+++++||+...
T Consensus 142 ----~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 142 ----TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ----cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 1123456777888885 467888888889999988654
No 422
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=96.37 E-value=0.26 Score=37.19 Aligned_cols=142 Identities=12% Similarity=0.079 Sum_probs=79.2
Q ss_pred eEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeC-C--CeEEEEeccCc----eeee---eE-eecCCCeeEecC
Q 023822 103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-D--RTVLLWDQRAE----KCQG---LL-RVQGRPAAAYDD 171 (276)
Q Consensus 103 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--~~i~iwd~~~~----~~~~---~~-~~~~~~~~~~~~ 171 (276)
-.+||+.+++....-........+-.+.+||+++.+|+. + ..+++++.... .... .+ ...-.+....-+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 457888887643322222333344457789999998876 2 35788875441 1000 11 111233566678
Q ss_pred CCcEEEEee--CCeEEEEecccCCCCCeeeeeec-----CCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEe
Q 023822 172 QGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVG-----GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 244 (276)
Q Consensus 172 ~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 244 (276)
+|++++.|. .....+|..+...........+. ....---.+...|+|++++.+..+. .|||..+.+.++.+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence 898888887 34455665433221111111111 1111223567789999998887654 57798888777766
Q ss_pred ec
Q 023822 245 NV 246 (276)
Q Consensus 245 ~~ 246 (276)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 53
No 423
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.29 E-value=0.098 Score=43.21 Aligned_cols=143 Identities=10% Similarity=0.123 Sum_probs=90.8
Q ss_pred cCCCCEEE-EeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCC-------eEEEeccCCCCCceEEEEccCCc-e
Q 023822 43 HKSSSYLV-TASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT-------TVIYSSKNGWDESLRLLSLHDNK-Y 113 (276)
Q Consensus 43 ~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~~~~d~~i~~~d~~~~~-~ 113 (276)
..+.++|+ .|+....++-.|++.|+.+..+..+..- .+.|.|..+ .-++|-+ +..|.-.|.+-.. .
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS---~~svFrIDPR~~gNK 550 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS---DYSVFRIDPRARGNK 550 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec---ccceEEecccccCCc
Confidence 33445544 4555667888899999999988877643 567777542 2233443 6667666765332 1
Q ss_pred eeeecccCcceEEEEec----cCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEeeCCeEEEE
Q 023822 114 LRYFKGHHDRVVSLSLC----SSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAFGGYIRMF 187 (276)
Q Consensus 114 ~~~~~~~~~~i~~~~~~----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~d~~i~~~ 187 (276)
+... ......+.-.|+ ..+.+++.++..|-|++||--..+....+ -+..+..+..+.+|+++.+.+...+.+-
T Consensus 551 i~v~-esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~ 629 (776)
T COG5167 551 IKVV-ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLT 629 (776)
T ss_pred eeee-eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEE
Confidence 1111 111222222222 24458999999999999995443333333 3455778889999999999999999999
Q ss_pred eccc
Q 023822 188 DARK 191 (276)
Q Consensus 188 d~~~ 191 (276)
|++-
T Consensus 630 d~~i 633 (776)
T COG5167 630 DVPI 633 (776)
T ss_pred eccc
Confidence 9764
No 424
>PHA02790 Kelch-like protein; Provisional
Probab=96.21 E-value=0.37 Score=40.80 Aligned_cols=107 Identities=9% Similarity=0.057 Sum_probs=52.4
Q ss_pred CCCEEEEeecC--CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceee--eeccc
Q 023822 45 SSSYLVTASDD--ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR--YFKGH 120 (276)
Q Consensus 45 ~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~--~~~~~ 120 (276)
++...+.|+.+ ..+..||..+++....-.............-+++..+.|+..+....+..||..+++-.. .+...
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~ 397 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP 397 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc
Confidence 56666777754 357778876543322111111111112223366666777653223457788887654322 11111
Q ss_pred CcceEEEEeccCCCEEEEeeCCCeEEEEeccCceee
Q 023822 121 HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156 (276)
Q Consensus 121 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 156 (276)
.... ++ ..-+++..+.|+ .+.+||.++.+-.
T Consensus 398 r~~~-~~-~~~~~~IYv~GG---~~e~ydp~~~~W~ 428 (480)
T PHA02790 398 HYKS-CA-LVFGRRLFLVGR---NAEFYCESSNTWT 428 (480)
T ss_pred cccc-eE-EEECCEEEEECC---ceEEecCCCCcEe
Confidence 1111 22 123566666663 5678888766443
No 425
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.19 E-value=0.033 Score=29.06 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=23.3
Q ss_pred ceEEEEeccCC---CEEEEeeCCCeEEEEeccC
Q 023822 123 RVVSLSLCSSK---DCFISGSLDRTVLLWDQRA 152 (276)
Q Consensus 123 ~i~~~~~~~~~---~~l~~~~~d~~i~iwd~~~ 152 (276)
.+.++.|+|++ .+|+.+-.-+.|.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 57888898744 4777777778899999885
No 426
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.085 Score=47.63 Aligned_cols=145 Identities=9% Similarity=0.012 Sum_probs=89.3
Q ss_pred eceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceee-----eec------ccCcceEEEEeccCCC-EEEEeeCCCe
Q 023822 77 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR-----YFK------GHHDRVVSLSLCSSKD-CFISGSLDRT 144 (276)
Q Consensus 77 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~-----~~~------~~~~~i~~~~~~~~~~-~l~~~~~d~~ 144 (276)
-++..+...+|....++..... +-.|..||+++-..-. -+. .......++.|+|.-. ..+.+..|+.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsn-g~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSN-GEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred ccceEEEeccCCceEEEEEecC-CceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 3566667777877666655422 5688999987542211 111 1223456788888543 4677778999
Q ss_pred EEEEeccCceee-eeE-eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEE
Q 023822 145 VLLWDQRAEKCQ-GLL-RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM 221 (276)
Q Consensus 145 i~iwd~~~~~~~-~~~-~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 221 (276)
|++.-+...... ..+ -.....+++|+|.|+-++++. .|++.-|...-.....+..-... ....|.++.|-....++
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~-e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVE-ENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcC-CCcceeEEEEecceeEE
Confidence 988876543222 222 334467999999999999998 79999887654211111111111 14678899998776666
Q ss_pred EE
Q 023822 222 LL 223 (276)
Q Consensus 222 ~~ 223 (276)
++
T Consensus 259 vv 260 (1405)
T KOG3630|consen 259 VV 260 (1405)
T ss_pred EE
Confidence 55
No 427
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=96.11 E-value=0.35 Score=35.45 Aligned_cols=141 Identities=11% Similarity=0.146 Sum_probs=78.5
Q ss_pred CEEEEeecCCeEEEEEcc--CCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCC---ceEEE-EccCC----ceee-
Q 023822 47 SYLVTASDDESIRLYDVT--AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE---SLRLL-SLHDN----KYLR- 115 (276)
Q Consensus 47 ~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~---~i~~~-d~~~~----~~~~- 115 (276)
..|+.+...+.|.+|++. ..+....+..- +.|..+.++..|+++++.-...... .+++| +.+.. .++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 344444556789999988 33455555544 6899999999999999976543233 56666 22211 1221
Q ss_pred eecc---------------------cCcceEEEEeccCCCEEEEeeCCCeEEEEeccCcee-ee---eEee--------c
Q 023822 116 YFKG---------------------HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC-QG---LLRV--------Q 162 (276)
Q Consensus 116 ~~~~---------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~---~~~~--------~ 162 (276)
.+-+ -..++.+++..|-..-|+.|+ ++++.+|.+..... .. .+.. .
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 1112 123456777777433455555 46788988775543 11 1111 1
Q ss_pred CCCeeEecCCCcEEEEeeCCeEEEEec
Q 023822 163 GRPAAAYDDQGLVFAVAFGGYIRMFDA 189 (276)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~d~~i~~~d~ 189 (276)
...-....--+.++|..++..++++.+
T Consensus 187 ~~~p~~v~ic~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 187 NFKPTQVAICEGYIAVMSDLEVLVLKL 213 (215)
T ss_pred CceEEEEEEEeeEEEEecCCEEEEEEE
Confidence 111111112345677777777777654
No 428
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.04 E-value=0.55 Score=39.76 Aligned_cols=147 Identities=11% Similarity=0.077 Sum_probs=85.6
Q ss_pred CCcEEEEEEcCCCCEEE-Eee--cCCeEEEEEccCCeeeeeeeeeeeceEEEEEecc----CCeEEEeccCCCCCceEEE
Q 023822 34 NGRISSMDFHKSSSYLV-TAS--DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH----PTTVIYSSKNGWDESLRLL 106 (276)
Q Consensus 34 ~~~v~~~~~~~~~~~l~-~~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~~~~d~~i~~~ 106 (276)
-.+|..++|. ||+.++ +.- .+|.+++=| .+.+.. -..|..+.|.|- ...+++... ...|.+|
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGq----FEhV~GlsW~P~~~~~~paLLAVQH---kkhVtVW 87 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQ----FEHVHGLSWAPPCTADTPALLAVQH---KKHVTVW 87 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeec----cceeeeeeecCcccCCCCceEEEec---cceEEEE
Confidence 3578889997 565544 332 233333222 122322 335889999985 334445554 8999999
Q ss_pred EccC-----Cceeeeecc-----cCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce--eeeeE-eecCCCeeEecCCC
Q 023822 107 SLHD-----NKYLRYFKG-----HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK--CQGLL-RVQGRPAAAYDDQG 173 (276)
Q Consensus 107 d~~~-----~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~-~~~~~~~~~~~~~~ 173 (276)
.+.- ++.+..... ..---..+.|+|....|+.-.....-.+++++... ....+ ..+.+.|.+|..||
T Consensus 88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDG 167 (671)
T ss_pred EeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcC
Confidence 8752 222221111 11122457799999888777665555566665433 22333 33447799999999
Q ss_pred cEEEEeeC--CeEEEEeccc
Q 023822 174 LVFAVAFG--GYIRMFDARK 191 (276)
Q Consensus 174 ~~l~~~~d--~~i~~~d~~~ 191 (276)
+.|+++-+ =.-++||-..
T Consensus 168 ~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CEEEEEeCCeEEEEEecCch
Confidence 77776664 4567787544
No 429
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.03 E-value=0.41 Score=35.56 Aligned_cols=92 Identities=7% Similarity=0.039 Sum_probs=63.2
Q ss_pred eEEEEEeccCCeEEEeccCCCCCceEEEE--ccCCc-----eeeeecc----cCcceEEEEeccCCCEEEEeeCCCeEEE
Q 023822 79 VDLVCFTSHPTTVIYSSKNGWDESLRLLS--LHDNK-----YLRYFKG----HHDRVVSLSLCSSKDCFISGSLDRTVLL 147 (276)
Q Consensus 79 v~~~~~~~~~~~l~~~~~~~~d~~i~~~d--~~~~~-----~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d~~i~i 147 (276)
-..++|..+.+.+...... +-.|.-|| ..++. .+..++. ..-..-.++...+|++++++-..++|..
T Consensus 160 sNgl~Wd~d~K~fY~iDsl--n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSL--NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQK 237 (310)
T ss_pred CccccccccCcEEEEEccC--ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence 4578898888887776542 77787777 45543 2333322 1111234556678888888888999999
Q ss_pred EeccCceeeeeE--eecCCCeeEecCC
Q 023822 148 WDQRAEKCQGLL--RVQGRPAAAYDDQ 172 (276)
Q Consensus 148 wd~~~~~~~~~~--~~~~~~~~~~~~~ 172 (276)
.|..+++.+.++ ....+.+++|-..
T Consensus 238 ~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 238 VDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred ECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 999999999888 5556778888654
No 430
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.96 E-value=0.64 Score=41.23 Aligned_cols=35 Identities=9% Similarity=0.113 Sum_probs=28.7
Q ss_pred CCCCceEEEECCC---CcEEEEeecCCcEEEEECCCCc
Q 023822 205 DISDANVVKFSND---GRLMLLTTMEGHIHVLDSFRGT 239 (276)
Q Consensus 205 ~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~ 239 (276)
....|..+.|+|. +..|++-..|+.+|+||+...+
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 3457888999996 4789999999999999997543
No 431
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.91 E-value=0.22 Score=39.84 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=14.3
Q ss_pred CCceEEEEECCCCcEEEEecCCC
Q 023822 251 RNSTLEASFSPEGMFVISGRVSP 273 (276)
Q Consensus 251 ~~~v~~~~~s~~g~~l~~~~~dg 273 (276)
...-..+.|.|||.+.++.+..+
T Consensus 113 ~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 113 NHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp SS-EEEEEE-TTSEEEEEEB-TT
T ss_pred CCCCccccCCCCCcEEEEeCCCC
Confidence 34556799999997776666543
No 432
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.83 E-value=0.072 Score=39.70 Aligned_cols=63 Identities=8% Similarity=0.111 Sum_probs=46.0
Q ss_pred eccCCCEEEEeeCCCeEEEEeccCceeeeeE-------e---------ecCCCeeEecCCCcEEEEeeCCeEEEEeccc
Q 023822 129 LCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-------R---------VQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191 (276)
Q Consensus 129 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------~---------~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~ 191 (276)
+..+++++++.+.+|.+++||+.+++....- . ...+..+.++.+|.-++.-++|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence 3457888999999999999999988764332 1 1224456777788777777778888888654
No 433
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.81 E-value=0.19 Score=41.19 Aligned_cols=94 Identities=13% Similarity=0.171 Sum_probs=63.7
Q ss_pred hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeec-eEEEEEeccC------------
Q 023822 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYG-VDLVCFTSHP------------ 88 (276)
Q Consensus 22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~------------ 88 (276)
..+.....|......+.++..+|++++.|+...=|.|.++|+.++..++.+++-... +.-+.....+
T Consensus 295 ~~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~ 374 (415)
T PF14655_consen 295 APLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKS 374 (415)
T ss_pred cccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCC
Confidence 455666677778888999999999998888877899999999998888777654322 1111111111
Q ss_pred -----Ce-EEEeccCCCCCceEEEEccCCceeeeec
Q 023822 89 -----TT-VIYSSKNGWDESLRLLSLHDNKYLRYFK 118 (276)
Q Consensus 89 -----~~-l~~~~~~~~d~~i~~~d~~~~~~~~~~~ 118 (276)
.+ ++.+.. .|.|.+|.++++..+..+.
T Consensus 375 ~~~~~l~LvIyapr---Rg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 375 SSRFALFLVIYAPR---RGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred CCcceEEEEEEecc---CCeEEEEecCCCCEEEEEE
Confidence 11 222333 7889999988877665543
No 434
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=95.76 E-value=0.96 Score=37.63 Aligned_cols=30 Identities=27% Similarity=0.243 Sum_probs=24.9
Q ss_pred CceEEEECCCCcEEEEeecCCcEEEEECCC
Q 023822 208 DANVVKFSNDGRLMLLTTMEGHIHVLDSFR 237 (276)
Q Consensus 208 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 237 (276)
.|.+++..+..+.|++.+.+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 488899998889999999999999999974
No 435
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.73 E-value=0.078 Score=27.71 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=25.5
Q ss_pred CcEEEEEEcCCC---CEEEEeecCCeEEEEEccC
Q 023822 35 GRISSMDFHKSS---SYLVTASDDESIRLYDVTA 65 (276)
Q Consensus 35 ~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~ 65 (276)
+.|.++.|+|+. .+|+.+-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999844 4788877789999999984
No 436
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=95.68 E-value=0.094 Score=42.67 Aligned_cols=160 Identities=13% Similarity=0.055 Sum_probs=96.1
Q ss_pred eccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeee-ee-eeee----eceE-EEEEeccCCeEEEeccCCCCCc
Q 023822 30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK-TI-NSKK----YGVD-LVCFTSHPTTVIYSSKNGWDES 102 (276)
Q Consensus 30 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~-~~~~----~~v~-~~~~~~~~~~l~~~~~~~~d~~ 102 (276)
+..-...|..+-..|||+.|..-+. .++.++++.+..... .+ .... ..|+ .+..-..+..+++... ||.
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~---dG~ 291 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE---DGL 291 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC---CCc
Confidence 3344566778888999998876655 678888886543211 11 1111 1122 2222335666777777 898
Q ss_pred eEEE-EccCC-ce----eeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcE
Q 023822 103 LRLL-SLHDN-KY----LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLV 175 (276)
Q Consensus 103 i~~~-d~~~~-~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~ 175 (276)
|..| |.+.+ .+ ++.++-...++..+.-..+.+-+++-+.+|++..+.....+....- -......++++|.+..
T Consensus 292 vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~ 371 (733)
T COG4590 292 VSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAY 371 (733)
T ss_pred eeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccch
Confidence 8888 44332 21 1222222233333332223446778888888888765544433322 2335667899999999
Q ss_pred EEEeeCCeEEEEecccCC
Q 023822 176 FAVAFGGYIRMFDARKYE 193 (276)
Q Consensus 176 l~~~~d~~i~~~d~~~~~ 193 (276)
+..-..|.|+++.+++..
T Consensus 372 Ll~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 372 LLSEDQGKIRLAQLENRN 389 (733)
T ss_pred heeecCCceEEEEecCCC
Confidence 998888999999988744
No 437
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=0.28 Score=40.08 Aligned_cols=107 Identities=10% Similarity=0.068 Sum_probs=68.5
Q ss_pred CeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEe
Q 023822 165 PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 244 (276)
Q Consensus 165 ~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 244 (276)
+.+.|+..++.+.+...|.+.=|-...........+.. ...++|.++.||+|.+.||+--.++.|.+++....+....+
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm-~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDM-DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeee-cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 45667777777766666667777766554322223332 34569999999999999999999999999997544333222
Q ss_pred ec-CCCCCCceEEEEECCCCcEEEEecCCC
Q 023822 245 NV-KPVSRNSTLEASFSPEGMFVISGRVSP 273 (276)
Q Consensus 245 ~~-~~~~~~~v~~~~~s~~g~~l~~~~~dg 273 (276)
.. .......|....|+.+ .-+|.-+..|
T Consensus 105 ~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G 133 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSS-TEIAFITDQG 133 (657)
T ss_pred HHHhccCcceeEEEEEecC-eeEEEEecCC
Confidence 21 1123445888899876 3344444433
No 438
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.61 E-value=1 Score=36.96 Aligned_cols=147 Identities=9% Similarity=0.017 Sum_probs=81.4
Q ss_pred eEEEEeccCCCEEEEeeCCCeEEEEeccCc--eeeeeEeecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCC---Cee
Q 023822 124 VVSLSLCSSKDCFISGSLDRTVLLWDQRAE--KCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKG---PFD 198 (276)
Q Consensus 124 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~---~~~ 198 (276)
...+..++++.+++.+.....++-||-... +....-....+..+.+.+++.+++++.+|.+..=+ ..+... .+.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~-d~G~~~~~~~f~ 319 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSK-GTGLTEEDFDFE 319 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEec-CCCCccccccee
Confidence 344556677776666654433333443221 22222233445678889999999888877765433 222211 111
Q ss_pred eeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCC
Q 023822 199 IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPF 274 (276)
Q Consensus 199 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 274 (276)
..........+..+.|.+++..+++ +..|.+.... ..|+.-........-....+.+.|.++++.+++| .+|.
T Consensus 320 ~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~ 392 (398)
T PLN00033 320 EADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGV 392 (398)
T ss_pred ecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcE
Confidence 1112222345888999988875554 4677665554 4555533332111345678899998877766655 4443
No 439
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.52 E-value=0.14 Score=38.23 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=46.6
Q ss_pred EcCCCCEEEEeecCCeEEEEEccCCeeeeee-------e-------eeeeceEEEEEeccCCeEEEeccCCCCCceEEEE
Q 023822 42 FHKSSSYLVTASDDESIRLYDVTAATCLKTI-------N-------SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 107 (276)
Q Consensus 42 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d 107 (276)
+..++++|++-+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ +|..+.|+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls----ng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS----NGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe----CCCEEEec
Confidence 3456788999999999999999988764332 1 2335677777777777666655 66777777
Q ss_pred ccCC
Q 023822 108 LHDN 111 (276)
Q Consensus 108 ~~~~ 111 (276)
..-+
T Consensus 94 ~~L~ 97 (219)
T PF07569_consen 94 PDLG 97 (219)
T ss_pred cccc
Confidence 6543
No 440
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=95.52 E-value=0.98 Score=36.10 Aligned_cols=147 Identities=17% Similarity=0.208 Sum_probs=83.6
Q ss_pred CcceEEEEeccCCCEEEEeeCCCe------EEEEeccCc----eee---eeE--e-ec---------CCCeeEecCCCcE
Q 023822 121 HDRVVSLSLCSSKDCFISGSLDRT------VLLWDQRAE----KCQ---GLL--R-VQ---------GRPAAAYDDQGLV 175 (276)
Q Consensus 121 ~~~i~~~~~~~~~~~l~~~~~d~~------i~iwd~~~~----~~~---~~~--~-~~---------~~~~~~~~~~~~~ 175 (276)
-+.+..+.+.+++..+++.+.+|. +..+++... ..+ ... . .. ....+++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 345778888866666777777776 665555431 111 111 1 11 2236777778888
Q ss_pred EEEee-C------CeEEEEecccCCC-CCee---ee-------eecCCCCCceEEEECCCCcEEEEeec-----CC--c-
Q 023822 176 FAVAF-G------GYIRMFDARKYEK-GPFD---IF-------SVGGDISDANVVKFSNDGRLMLLTTM-----EG--H- 229 (276)
Q Consensus 176 l~~~~-d------~~i~~~d~~~~~~-~~~~---~~-------~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg--~- 229 (276)
+++.. + ..|+.++.. ++. ..+. .+ .....+..+-+++++|+|+.|+++.+ |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 77776 6 788888866 222 1110 01 11123456788999999996666532 22 1
Q ss_pred ------EEE--EECCC-CcEEEEeecCCC------CCCceEEEEECCCCcEEEE
Q 023822 230 ------IHV--LDSFR-GTLLSTYNVKPV------SRNSTLEASFSPEGMFVIS 268 (276)
Q Consensus 230 ------i~i--~d~~~-~~~~~~~~~~~~------~~~~v~~~~~s~~g~~l~~ 268 (276)
+++ ||..+ ++....+..... ....+..+.+.+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 445 45444 333333321111 3567889999999987764
No 441
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.45 E-value=0.0022 Score=52.00 Aligned_cols=141 Identities=15% Similarity=0.179 Sum_probs=94.0
Q ss_pred EEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEee--CCeEEEEecccCCCCCeeeeee
Q 023822 125 VSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSV 202 (276)
Q Consensus 125 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~ 202 (276)
....|.|.+.-++.++.+..+..||-........-.......++|+-++..++.-. .+.+++||+.+.... ....
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq---qLE~ 114 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ---QLES 114 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH---HHhc
Confidence 44567777777888888888999985543333222334445677877775554443 799999999874321 1111
Q ss_pred cCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822 203 GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP 273 (276)
Q Consensus 203 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 273 (276)
.+. ..-.-+.|++.+..++.+...|.+.|++..+.+.....- .|...+++++|.+.+. .+.++.|.
T Consensus 115 gg~-~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G---kh~RRgtq~av~lEd~-vil~dcd~ 180 (615)
T KOG2247|consen 115 GGT-SSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG---KHQRRGTQIAVTLEDY-VILCDCDN 180 (615)
T ss_pred cCc-chHHHHhhccCCccccccccccceEEEeccchhhhhhhc---ccccceeEEEecccce-eeecCcHH
Confidence 111 112227899999999999999999999987766655543 3888999999999765 44444443
No 442
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.31 E-value=0.03 Score=49.15 Aligned_cols=115 Identities=17% Similarity=0.284 Sum_probs=64.2
Q ss_pred eeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEcc--CCeeeeeee-----eeeeceEEEEEec---cCCeEEEeccC
Q 023822 29 SFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVT--AATCLKTIN-----SKKYGVDLVCFTS---HPTTVIYSSKN 97 (276)
Q Consensus 29 ~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~-----~~~~~v~~~~~~~---~~~~l~~~~~~ 97 (276)
.+++..+.|-.+.|-. +...++ -.-|.+.||++. .|+....+. .....+.-+.|.| +..++..+-.
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~- 203 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK- 203 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC-
Confidence 3566778888888853 222222 233678899876 444333332 2223345555554 5555655555
Q ss_pred CCCCceEEEEccCCceeeeecccCcceEEEEe-----------ccCCCEEEEeeCCCeEEEEe
Q 023822 98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSL-----------CSSKDCFISGSLDRTVLLWD 149 (276)
Q Consensus 98 ~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~-----------~~~~~~l~~~~~d~~i~iwd 149 (276)
++.+++..+.+... ..+.+|...+..++| +|||+.|+.++.||.++.|.
T Consensus 204 --~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 204 --GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred --CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 78888877654432 344557766665554 45555555555555555554
No 443
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=95.18 E-value=0.18 Score=26.05 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=24.3
Q ss_pred CCCcEEEEee-cCCcEEEEECCCCcEEEEee
Q 023822 216 NDGRLMLLTT-MEGHIHVLDSFRGTLLSTYN 245 (276)
Q Consensus 216 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~ 245 (276)
|++++|+++. .++.|.++|..+++.+..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 5677776655 57899999999999988887
No 444
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=95.00 E-value=1.2 Score=39.18 Aligned_cols=90 Identities=16% Similarity=0.229 Sum_probs=53.3
Q ss_pred EEEEeccCCCEEEEeeCCC-----eEEEEeccC---ceeeeeE-eecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCC
Q 023822 125 VSLSLCSSKDCFISGSLDR-----TVLLWDQRA---EKCQGLL-RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKG 195 (276)
Q Consensus 125 ~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~---~~~~~~~-~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~ 195 (276)
..+.|-|+|..+++-..|| .|..+..+. ++.-... ........+|+-....++.+..+.+++|-..+..-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhW- 328 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHW- 328 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEE-
Confidence 3488999999999877665 344444221 1111111 11223356777777778888889999998776331
Q ss_pred CeeeeeecCCCCCceEEEECCCC
Q 023822 196 PFDIFSVGGDISDANVVKFSNDG 218 (276)
Q Consensus 196 ~~~~~~~~~~~~~i~~~~~~~~~ 218 (276)
..........+.-+.|+|..
T Consensus 329 ---YLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 329 ---YLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred ---EEEEeecCCCcceeeecccc
Confidence 12222233456678888854
No 445
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=94.98 E-value=1.7 Score=36.35 Aligned_cols=110 Identities=10% Similarity=-0.008 Sum_probs=52.0
Q ss_pred CCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeee---eeecCCCCCceEEEECCCC------cEEEEee-------
Q 023822 163 GRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDI---FSVGGDISDANVVKFSNDG------RLMLLTT------- 225 (276)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~------~~l~~~~------- 225 (276)
....++|.|++++|++-. .|.|++++........... ............|+++|+- .+|+...
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~ 110 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDK 110 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCC
Confidence 344666677776666665 4677666544322111100 0001124567778888763 2333321
Q ss_pred ---cCCcEEEEECCCC--c---EEEEeecCC-CCCCceEEEEECCCCcEEEEecCC
Q 023822 226 ---MEGHIHVLDSFRG--T---LLSTYNVKP-VSRNSTLEASFSPEGMFVISGRVS 272 (276)
Q Consensus 226 ---~dg~i~i~d~~~~--~---~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~d 272 (276)
....|.-|.+... . ....+...+ .....-..++|.|||+++++.++.
T Consensus 111 ~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 111 ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1223444544311 1 111121110 011223468899999877766654
No 446
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.90 E-value=2.8 Score=37.93 Aligned_cols=212 Identities=10% Similarity=0.086 Sum_probs=120.3
Q ss_pred EEEEeecCCeEEEEEccCCeee--eeeeeeeeceEEEEEeccCCeEEEeccC-----------CCCCceEEEEccCCcee
Q 023822 48 YLVTASDDESIRLYDVTAATCL--KTINSKKYGVDLVCFTSHPTTVIYSSKN-----------GWDESLRLLSLHDNKYL 114 (276)
Q Consensus 48 ~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~-----------~~d~~i~~~d~~~~~~~ 114 (276)
.|+++.. +.+++.-++.-+.+ +++.. ......+++.+....+.+.+.. .+-..++++|-++.+.+
T Consensus 686 ~l~~~~~-~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl 763 (1096)
T KOG1897|consen 686 SLASANG-GALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL 763 (1096)
T ss_pred eEEEecC-CceEEEEecchhhcceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence 4555543 45777666543322 22222 2345566666534333333221 01224666666665544
Q ss_pred eeeccc-C---cceEEEEeccC-CCEEEEeeC----------CCeEEEEeccCceeeeeEeecCCC--eeEecCCCcEEE
Q 023822 115 RYFKGH-H---DRVVSLSLCSS-KDCFISGSL----------DRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFA 177 (276)
Q Consensus 115 ~~~~~~-~---~~i~~~~~~~~-~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ 177 (276)
...+-. . -.|.++.|..| +.++++|.. .|.|.++.....+.+...+...+. ..++.--+..+.
T Consensus 764 ~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkll 843 (1096)
T KOG1897|consen 764 SSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLL 843 (1096)
T ss_pred eeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEE
Confidence 332211 1 13555568777 557777753 478888888775545544443333 233333333445
Q ss_pred EeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC--CCcEEEEeecCCCCCCceE
Q 023822 178 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF--RGTLLSTYNVKPVSRNSTL 255 (276)
Q Consensus 178 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~v~ 255 (276)
++-+..|++|++...+. ......+..++..+...-.|..+++|.--+++.+...+ .|.....-+. -+..+++
T Consensus 844 A~In~~vrLye~t~~~e----Lr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD--~~p~Wmt 917 (1096)
T KOG1897|consen 844 AGINQSVRLYEWTTERE----LRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARD--YNPNWMT 917 (1096)
T ss_pred EecCcEEEEEEccccce----ehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehh--hCcccee
Confidence 55678999999987643 44444566788888888899999999988887775544 3334333322 3567788
Q ss_pred EEEECCCCcEEE
Q 023822 256 EASFSPEGMFVI 267 (276)
Q Consensus 256 ~~~~s~~g~~l~ 267 (276)
++.+-.+..++.
T Consensus 918 aveil~~d~ylg 929 (1096)
T KOG1897|consen 918 AVEILDDDTYLG 929 (1096)
T ss_pred eEEEecCceEEe
Confidence 888766655543
No 447
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.87 E-value=0.55 Score=38.47 Aligned_cols=133 Identities=6% Similarity=-0.057 Sum_probs=80.0
Q ss_pred CCCEEEEeeCCCeEEEEeccCce--eeeeE---eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCC
Q 023822 132 SKDCFISGSLDRTVLLWDQRAEK--CQGLL---RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGD 205 (276)
Q Consensus 132 ~~~~l~~~~~d~~i~iwd~~~~~--~~~~~---~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~ 205 (276)
|.+..+.+...|.+.=|-..... ....+ ..+++.++.|++|++++++-. +..|.+++....+............
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k 111 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK 111 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccC
Confidence 33333344444555666554322 11122 445788999999999999988 8999999985433322223333344
Q ss_pred CCCceEEEECCCCcEEEEeecCCcEEEEECCCCc-EEEEeecCCCCCCceEEEEECCCCcEEEEe
Q 023822 206 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISG 269 (276)
Q Consensus 206 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 269 (276)
...|....|+.+ .-+|..+..| +.+|-....+ .++..+ .+...|.-..|.++.+.+.-+
T Consensus 112 ~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVk---s~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 112 NANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVK---SHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred cceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhh---hcccCccEEEEccccceEeee
Confidence 456888899877 4466665554 6666654332 233333 466777778888887654433
No 448
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.71 E-value=1.6 Score=34.05 Aligned_cols=218 Identities=12% Similarity=0.138 Sum_probs=122.1
Q ss_pred EEEEEEcCCCCEEEEeecCCeEEEEEcc------CC-eeeeeeee-----eeeceEEEEEeccCCe------------EE
Q 023822 37 ISSMDFHKSSSYLVTASDDESIRLYDVT------AA-TCLKTINS-----KKYGVDLVCFTSHPTT------------VI 92 (276)
Q Consensus 37 v~~~~~~~~~~~l~~~~~d~~i~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~~------------l~ 92 (276)
-+.|+++|.+.+-++....+...+||.. .. ..+..+.. .....+.+.|+....+ ++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4679999988877777778899999986 12 22333331 1235677777744332 56
Q ss_pred EeccCCCCCceEEEEccCCce-----eeeeccc-Ccc-eEEEEeccC--CCEEEE-eeCCCeEEEEeccCceeee--eEe
Q 023822 93 YSSKNGWDESLRLLSLHDNKY-----LRYFKGH-HDR-VVSLSLCSS--KDCFIS-GSLDRTVLLWDQRAEKCQG--LLR 160 (276)
Q Consensus 93 ~~~~~~~d~~i~~~d~~~~~~-----~~~~~~~-~~~-i~~~~~~~~--~~~l~~-~~~d~~i~iwd~~~~~~~~--~~~ 160 (276)
.+++ ||+|.-|...-+.. ...+... ... ...+++... +++|.. --..++|.+||-.-.+... .+.
T Consensus 105 f~tE---dGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 105 FVTE---DGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred EEeC---CceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 6666 99999998533222 1122211 122 334555433 444444 3457889999855332211 111
Q ss_pred ecCCCeeEecC------CCcEEEE--------------eeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECC----
Q 023822 161 VQGRPAAAYDD------QGLVFAV--------------AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN---- 216 (276)
Q Consensus 161 ~~~~~~~~~~~------~~~~l~~--------------~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~---- 216 (276)
...++ .-|.| .++++++ ..-|.|-+||.... .+..+...+.-...+.++..|
T Consensus 182 DP~iP-agyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~---l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 182 DPALP-AGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ---LLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CCCCC-CCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc---EEEEeccCCcccCCceeeeChhhhC
Confidence 11111 01111 1222221 11368888888652 122233344445667788766
Q ss_pred --CCcEEEEeecCCcEEEEECCCCcEEEEeecCCCC---CCceEEEEECC
Q 023822 217 --DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS---RNSTLEASFSP 261 (276)
Q Consensus 217 --~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~v~~~~~s~ 261 (276)
.|.+|+---.||+|..||..+++.+-.+....++ -..++.|+|-.
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 4566665557999999999999988887742221 13457788855
No 449
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.70 E-value=2.8 Score=36.97 Aligned_cols=111 Identities=11% Similarity=0.085 Sum_probs=68.7
Q ss_pred eEEEEecc--CCCEEEEeeCCCeEEEEeccC-------c----e---------eeeeE-eecCCCeeEec--CCCcEEEE
Q 023822 124 VVSLSLCS--SKDCFISGSLDRTVLLWDQRA-------E----K---------CQGLL-RVQGRPAAAYD--DQGLVFAV 178 (276)
Q Consensus 124 i~~~~~~~--~~~~l~~~~~d~~i~iwd~~~-------~----~---------~~~~~-~~~~~~~~~~~--~~~~~l~~ 178 (276)
|+.|.... ....|+.|..||.|.+|.++. . . +...+ -......++++ ...+++|+
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV 182 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV 182 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence 44444432 455899999999999997631 1 0 00111 11234467887 77899999
Q ss_pred ee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC---c---EEEEeecCCcEEEEEC
Q 023822 179 AF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG---R---LMLLTTMEGHIHVLDS 235 (276)
Q Consensus 179 ~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~---~l~~~~~dg~i~i~d~ 235 (276)
+. ...|.||-......... ......+...|.+|+|-++. . .+++++-.|.+.+|++
T Consensus 183 SsNs~~VTVFaf~l~~~r~~-~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 183 SSNSQEVTVFAFALVDERFY-HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ecCCceEEEEEEeccccccc-cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 98 46677766544221111 11112355678899998753 2 7788889999999887
No 450
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.59 E-value=2.4 Score=39.42 Aligned_cols=30 Identities=17% Similarity=0.377 Sum_probs=26.0
Q ss_pred CcEEEEEEcCCCCEEEEeecCCeEEEEEcc
Q 023822 35 GRISSMDFHKSSSYLVTASDDESIRLYDVT 64 (276)
Q Consensus 35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 64 (276)
.....++|+|.-.++|.+...|.|+++-..
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEeccc
Confidence 456678999999999999999999999754
No 451
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=1 Score=41.87 Aligned_cols=137 Identities=12% Similarity=0.186 Sum_probs=86.0
Q ss_pred CCceEEEEccCCceeeeecccCcceEEEEec-c-------CCCEEEEeeCCCeEEEEeccCceee---------eeE--e
Q 023822 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLC-S-------SKDCFISGSLDRTVLLWDQRAEKCQ---------GLL--R 160 (276)
Q Consensus 100 d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~-~-------~~~~l~~~~~d~~i~iwd~~~~~~~---------~~~--~ 160 (276)
|+.+.+|+.+++.....+.+-...|..+..- | .=++++....--.|.++-+.-.+.. ..+ .
T Consensus 98 Dn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~d 177 (1311)
T KOG1900|consen 98 DNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVD 177 (1311)
T ss_pred CCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecC
Confidence 8999999999977777776666666655432 2 2233333333445565543321110 111 2
Q ss_pred ecCCCeeEecCCCcEEEEeeCCeEEEEecccCC------CC-------------Ceeeeeec-CCCCCceEEEECCCCcE
Q 023822 161 VQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYE------KG-------------PFDIFSVG-GDISDANVVKFSNDGRL 220 (276)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~------~~-------------~~~~~~~~-~~~~~i~~~~~~~~~~~ 220 (276)
.-.+.++....+|+++.+|.||.|+-.-.+... +. |. ...+. .+..+|..++....-..
T Consensus 178 g~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs-~~~~~~~~~dpI~qi~ID~SR~I 256 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS-LLSVPGSSKDPIRQITIDNSRNI 256 (1311)
T ss_pred CceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhh-hhcCCCCCCCcceeeEeccccce
Confidence 233567888899999999998855433222211 00 01 12223 45678999999988889
Q ss_pred EEEeecCCcEEEEECCC
Q 023822 221 MLLTTMEGHIHVLDSFR 237 (276)
Q Consensus 221 l~~~~~dg~i~i~d~~~ 237 (276)
+++-+..|.|.+||+..
T Consensus 257 lY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 257 LYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeeccCceEEEEEccC
Confidence 99999999999999865
No 452
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=94.10 E-value=2.6 Score=34.02 Aligned_cols=42 Identities=12% Similarity=0.027 Sum_probs=22.3
Q ss_pred cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822 229 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP 273 (276)
Q Consensus 229 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 273 (276)
.+.+||..+.+-...-.. ....-...+..-++++++.|+.+.
T Consensus 291 ~~e~yd~~~~~W~~~~~l---p~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKL---PQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred EeeEEEecCCcccccCCC---CCCceeeEEEEcCCEEEEEeccCC
Confidence 467888776543222211 111122233455788889988764
No 453
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.04 E-value=2.3 Score=33.29 Aligned_cols=169 Identities=12% Similarity=0.101 Sum_probs=88.5
Q ss_pred CceEEEEccCCceeeeecc------cCcceEEEEeccCC-----CEEE-EeeCCCeEEEEeccCceeeeeEeecC-----
Q 023822 101 ESLRLLSLHDNKYLRYFKG------HHDRVVSLSLCSSK-----DCFI-SGSLDRTVLLWDQRAEKCQGLLRVQG----- 163 (276)
Q Consensus 101 ~~i~~~d~~~~~~~~~~~~------~~~~i~~~~~~~~~-----~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~----- 163 (276)
-.|.+||+.+++.++++.- ..+.+..+.+.... .++. +=+..+.|.++|+.+++..+.++...
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 4677788888877666532 24567777776522 2333 33334689999999988766652211
Q ss_pred ----------------CCeeEecC---CCcEEEEeeCCeEEEEeccc--CCCCC---ee-----eeeecCCCCCceEEEE
Q 023822 164 ----------------RPAAAYDD---QGLVFAVAFGGYIRMFDARK--YEKGP---FD-----IFSVGGDISDANVVKF 214 (276)
Q Consensus 164 ----------------~~~~~~~~---~~~~l~~~~d~~i~~~d~~~--~~~~~---~~-----~~~~~~~~~~i~~~~~ 214 (276)
+..++.+| +++.|.-..=..-++|.+.+ ..... .. ...+.........+++
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 11233332 44444444311112332221 11100 00 1111111235667899
Q ss_pred CCCCcEEEEeecCCcEEEEECCCC---cEEEEeecCCCCCCceEEEEECC--CCcEEEEe
Q 023822 215 SNDGRLMLLTTMEGHIHVLDSFRG---TLLSTYNVKPVSRNSTLEASFSP--EGMFVISG 269 (276)
Q Consensus 215 ~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~ 269 (276)
+++|.++++--..+.|..|+..+. +....+...+..-..+.++.+.+ +|.+.+..
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 999998888888999999997651 12222322111245788999999 77655443
No 454
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.98 E-value=1.2 Score=29.97 Aligned_cols=110 Identities=12% Similarity=0.110 Sum_probs=68.0
Q ss_pred EEEEcCCCCEEEEeecCCeEEEEEccCCe--------eeeeeeeeeeceEEEEEec-----cCCeEEEeccCCCCCceEE
Q 023822 39 SMDFHKSSSYLVTASDDESIRLYDVTAAT--------CLKTINSKKYGVDLVCFTS-----HPTTVIYSSKNGWDESLRL 105 (276)
Q Consensus 39 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~~~~d~~i~~ 105 (276)
.-.|......|++++.-|.|.|++..... .+..+.. ...|++++--+ ....|+.++ ...|..
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt----~t~lla 77 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGT----QTSLLA 77 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEec----cceEEE
Confidence 34566666678888888999999876332 2233332 34567765544 345677776 789999
Q ss_pred EEccCCceeeeecccCcceEEEEecc---CCCEEEEeeCCCeEEEEeccCce
Q 023822 106 LSLHDNKYLRYFKGHHDRVVSLSLCS---SKDCFISGSLDRTVLLWDQRAEK 154 (276)
Q Consensus 106 ~d~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~ 154 (276)
||+..+.-+.. +.-.+.+.++.+-. ...-++..+.+..|.-||....+
T Consensus 78 YDV~~N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 78 YDVENNSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred EEcccCchhhh-hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 99988765443 23446677776632 12234444446777777765544
No 455
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.75 E-value=0.71 Score=33.03 Aligned_cols=31 Identities=16% Similarity=0.116 Sum_probs=24.9
Q ss_pred cceEEEEeccCC------CEEEEeeCCCeEEEEeccC
Q 023822 122 DRVVSLSLCSSK------DCFISGSLDRTVLLWDQRA 152 (276)
Q Consensus 122 ~~i~~~~~~~~~------~~l~~~~~d~~i~iwd~~~ 152 (276)
..+..++|+|.| -+|++.+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378899999843 3788889999999998664
No 456
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.57 E-value=0.048 Score=47.95 Aligned_cols=129 Identities=15% Similarity=0.198 Sum_probs=75.8
Q ss_pred cEEEEEEcC---CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEE-----------EEeccCCeEEEeccCCCCC
Q 023822 36 RISSMDFHK---SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLV-----------CFTSHPTTVIYSSKNGWDE 101 (276)
Q Consensus 36 ~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~l~~~~~~~~d~ 101 (276)
.+.-+.|.| +..++..+-.++++++.++.+... ..+..|...+..+ ..+|||+.++.+.. ||
T Consensus 182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~---dG 257 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAIS---DG 257 (1283)
T ss_pred CcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeec---CC
Confidence 345555654 556777777888888877654322 3333454443332 46899999999998 88
Q ss_pred ceEEEEcc-----CCceeeeecccCc-ceEEEEeccCC---------CEEEEee-CCCeEEEEeccCceeeeeEeecCCC
Q 023822 102 SLRLLSLH-----DNKYLRYFKGHHD-RVVSLSLCSSK---------DCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRP 165 (276)
Q Consensus 102 ~i~~~d~~-----~~~~~~~~~~~~~-~i~~~~~~~~~---------~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 165 (276)
.++.|.+. ..+++..++.|.+ +-.|..++.+. .++++++ .+..+++|.....+|...+....+.
T Consensus 258 ~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~ 337 (1283)
T KOG1916|consen 258 SVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQ 337 (1283)
T ss_pred ccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceE
Confidence 88888753 2345556677763 32232243321 1333433 3567899988777776443334444
Q ss_pred eeE
Q 023822 166 AAA 168 (276)
Q Consensus 166 ~~~ 168 (276)
.+.
T Consensus 338 iV~ 340 (1283)
T KOG1916|consen 338 IVG 340 (1283)
T ss_pred eec
Confidence 444
No 457
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.49 E-value=2.7 Score=32.28 Aligned_cols=189 Identities=11% Similarity=0.048 Sum_probs=120.1
Q ss_pred cEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceee
Q 023822 36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR 115 (276)
Q Consensus 36 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~ 115 (276)
.-..++-.|||..-+++...+.|--.|..+|+....-.+....-..+..-|++..-++-.. . .|.-.|.++.+..+
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~---~-aI~R~dpkt~evt~ 138 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTG---L-AIGRLDPKTLEVTR 138 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCc---c-eeEEecCcccceEE
Confidence 3456777788887778777777777788888765554444555667777788776655432 2 45555555544322
Q ss_pred ---eecccCcceEEEEeccCCCEEEEeeCC---------CeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEee-CC
Q 023822 116 ---YFKGHHDRVVSLSLCSSKDCFISGSLD---------RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF-GG 182 (276)
Q Consensus 116 ---~~~~~~~~i~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d~ 182 (276)
..+..........|.+.|++-+++... +.|++|+.. .......++..|+|.+..++. ++
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP--------qG~gpyGi~atpdGsvwyaslagn 210 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP--------QGGGPYGICATPDGSVWYASLAGN 210 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC--------CCCCCcceEECCCCcEEEEecccc
Confidence 122334567788899999988877631 223333322 334567899999998888776 78
Q ss_pred eEEEEecccCCCCCeeeeeec-CCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCc
Q 023822 183 YIRMFDARKYEKGPFDIFSVG-GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT 239 (276)
Q Consensus 183 ~i~~~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 239 (276)
.|...|....... .+... ........+--+|.|+.-++....+.+..||-.+..
T Consensus 211 aiaridp~~~~ae---v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 211 AIARIDPFAGHAE---VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred ceEEcccccCCcc---eecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence 8888887765322 11111 112344556667888888887778888888865443
No 458
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=93.42 E-value=2.3 Score=32.25 Aligned_cols=135 Identities=13% Similarity=0.083 Sum_probs=76.2
Q ss_pred EEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeee------cccCcceEEEEecc
Q 023822 58 IRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF------KGHHDRVVSLSLCS 131 (276)
Q Consensus 58 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~------~~~~~~i~~~~~~~ 131 (276)
-.+||+.+++....-...+.-+..-.+.+||+.+.+++.......+++++.........+ -.....--+....|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 357888876543222222223344467789999999887543567888886541111111 11223334455567
Q ss_pred CCCEEEEeeCCC-eEEEEeccCc--eeee--eE-------eecCCCeeEecCCCcEEEEeeCCeEEEEecccCC
Q 023822 132 SKDCFISGSLDR-TVLLWDQRAE--KCQG--LL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYE 193 (276)
Q Consensus 132 ~~~~l~~~~~d~-~i~iwd~~~~--~~~~--~~-------~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~ 193 (276)
||+.|+.|+.+. +..+|.-+.. .... .+ ...-.+.+...|+|++++.+..+ -.+||..+.+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~-s~i~d~~~n~ 200 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG-SIIYDYKTNT 200 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC-cEEEeCCCCe
Confidence 999888888764 3445543211 1111 11 11223477888999999888754 4566877643
No 459
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.41 E-value=5.8 Score=35.83 Aligned_cols=104 Identities=16% Similarity=0.107 Sum_probs=66.0
Q ss_pred CCeEEEeccCCCCCceEEEEccCCceeeeecccCcc--------eEEEEecc----------------CCCEEEEeeCCC
Q 023822 88 PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDR--------VVSLSLCS----------------SKDCFISGSLDR 143 (276)
Q Consensus 88 ~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--------i~~~~~~~----------------~~~~l~~~~~d~ 143 (276)
+..+++++. ++.|.-.|..+++.+..+...... ...+.+.. .+..++.++.|+
T Consensus 194 gg~lYv~t~---~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg 270 (764)
T TIGR03074 194 GDTLYLCTP---HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA 270 (764)
T ss_pred CCEEEEECC---CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCC
Confidence 556666666 889999999999988876532211 11222211 234788888999
Q ss_pred eEEEEeccCceeeeeEeecCC----------C----eeEecC---CCcEEEEee----------CCeEEEEecccCCC
Q 023822 144 TVLLWDQRAEKCQGLLRVQGR----------P----AAAYDD---QGLVFAVAF----------GGYIRMFDARKYEK 194 (276)
Q Consensus 144 ~i~iwd~~~~~~~~~~~~~~~----------~----~~~~~~---~~~~l~~~~----------d~~i~~~d~~~~~~ 194 (276)
.+.-.|.++++..-.+..+.. . ...-.| ++.+++.+. +|.|+-+|.++++.
T Consensus 271 ~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred eEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 999999999988765522110 0 111122 455666543 47899999998774
No 460
>PRK10115 protease 2; Provisional
Probab=93.37 E-value=5.6 Score=35.55 Aligned_cols=112 Identities=8% Similarity=-0.003 Sum_probs=67.1
Q ss_pred ceEEEEEeccCCeEEEeccCCC--CCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCC------CeEEEEe
Q 023822 78 GVDLVCFTSHPTTVIYSSKNGW--DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD------RTVLLWD 149 (276)
Q Consensus 78 ~v~~~~~~~~~~~l~~~~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~iwd 149 (276)
.+..+.++|++++++.+...+. ...|++.|+.+++.+...-.... ..++|.+|++.|+....+ ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4677899999999988765322 23588889988764322211111 459999999866555432 3688888
Q ss_pred ccCc--eeeeeEeec-C-CC-eeEecCCCcEEEEee----CCeEEEEeccc
Q 023822 150 QRAE--KCQGLLRVQ-G-RP-AAAYDDQGLVFAVAF----GGYIRMFDARK 191 (276)
Q Consensus 150 ~~~~--~~~~~~~~~-~-~~-~~~~~~~~~~l~~~~----d~~i~~~d~~~ 191 (276)
+.++ +-...+... . .. ....+.++++++... ++.+.+++...
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 8877 323333321 1 11 223344665544443 47889998543
No 461
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.35 E-value=3.9 Score=33.70 Aligned_cols=143 Identities=10% Similarity=0.022 Sum_probs=79.8
Q ss_pred EEEEEeccCCeEEEeccCCCCCceE-EEEccCCce--eeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCcee-
Q 023822 80 DLVCFTSHPTTVIYSSKNGWDESLR-LLSLHDNKY--LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC- 155 (276)
Q Consensus 80 ~~~~~~~~~~~l~~~~~~~~d~~i~-~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~- 155 (276)
..+..++++..++++. .|.+. -||- +.. ...-......+..+.+.+++..++++ .+|.+.. ....++.
T Consensus 242 ~~v~~~~dG~~~~vg~----~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~ 313 (398)
T PLN00033 242 STVNRSPDGDYVAVSS----RGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTE 313 (398)
T ss_pred eeEEEcCCCCEEEEEC----CccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcc
Confidence 3455667777777776 44433 2332 221 11122235568899999998876655 5666543 3333321
Q ss_pred ----eeeEee----cCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC
Q 023822 156 ----QGLLRV----QGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME 227 (276)
Q Consensus 156 ----~~~~~~----~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 227 (276)
...... ..+..+.+.+++..++++..|.+....- .++.-. .......-......+.|.++++.+++ +.+
T Consensus 314 ~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D-~G~tW~-~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~ 390 (398)
T PLN00033 314 EDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTD-GGKSWK-RDKGADNIAANLYSVKFFDDKKGFVL-GND 390 (398)
T ss_pred cccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCC-CCccee-EccccCCCCcceeEEEEcCCCceEEE-eCC
Confidence 122211 2255688889999999999887766642 222110 01111223356788999887765554 467
Q ss_pred CcEEEE
Q 023822 228 GHIHVL 233 (276)
Q Consensus 228 g~i~i~ 233 (276)
|.|.-|
T Consensus 391 G~il~~ 396 (398)
T PLN00033 391 GVLLRY 396 (398)
T ss_pred cEEEEe
Confidence 776554
No 462
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.31 E-value=0.96 Score=32.38 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=25.4
Q ss_pred CCceEEEECCCC------cEEEEeecCCcEEEEECCC
Q 023822 207 SDANVVKFSNDG------RLMLLTTMEGHIHVLDSFR 237 (276)
Q Consensus 207 ~~i~~~~~~~~~------~~l~~~~~dg~i~i~d~~~ 237 (276)
..+..++|||.| -+|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378899999954 3688889999999998653
No 463
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.22 E-value=0.57 Score=24.11 Aligned_cols=32 Identities=9% Similarity=0.163 Sum_probs=24.6
Q ss_pred ccCCeEEEeccCCCCCceEEEEccCCceeeeecc
Q 023822 86 SHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKG 119 (276)
Q Consensus 86 ~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~ 119 (276)
|++++++++... ++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~--~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSG--SNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCC--CCEEEEEECCCCeEEEEEEC
Confidence 567777777653 88999999988887777654
No 464
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.19 E-value=3.1 Score=36.77 Aligned_cols=112 Identities=9% Similarity=0.143 Sum_probs=71.4
Q ss_pred cEEEEEEcC--CCCEEEEeecCCeEEEEEccC-------C----e---------eeeeeeeeeeceEEEEEe--ccCCeE
Q 023822 36 RISSMDFHK--SSSYLVTASDDESIRLYDVTA-------A----T---------CLKTINSKKYGVDLVCFT--SHPTTV 91 (276)
Q Consensus 36 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~l 91 (276)
.|+-|.... ....|+.+..||.|.+|.+++ . + +-..+. -...+++++++ ...+.+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 455555543 556889999999999997631 1 0 111111 23468889988 666777
Q ss_pred EEeccCCCCCceEEEEccC--Cceee-eecccCcceEEEEeccCC---C---EEEEeeCCCeEEEEecc
Q 023822 92 IYSSKNGWDESLRLLSLHD--NKYLR-YFKGHHDRVVSLSLCSSK---D---CFISGSLDRTVLLWDQR 151 (276)
Q Consensus 92 ~~~~~~~~d~~i~~~d~~~--~~~~~-~~~~~~~~i~~~~~~~~~---~---~l~~~~~d~~i~iwd~~ 151 (276)
|+++. ...|.||-... .+... .-..+...|.+++|-++. . ++++++-.|.+.+|++.
T Consensus 181 AVSsN---s~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 181 AVSSN---SQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEecC---CceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 77765 66677765443 22111 111256678899997643 2 78889999999998883
No 465
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.04 E-value=1.9 Score=29.14 Aligned_cols=109 Identities=11% Similarity=0.102 Sum_probs=65.3
Q ss_pred EEeccCCCEEEEeeCCCeEEEEeccCce--------eeeeEe-ecCCCeeE---ec--CCCcEEEEeeCCeEEEEecccC
Q 023822 127 LSLCSSKDCFISGSLDRTVLLWDQRAEK--------CQGLLR-VQGRPAAA---YD--DQGLVFAVAFGGYIRMFDARKY 192 (276)
Q Consensus 127 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~-~~~~~~~~---~~--~~~~~l~~~~d~~i~~~d~~~~ 192 (276)
-.|......|+.++.-|+|.|++..... .+..+. ...+.+++ +. .+...|..++...+..||+...
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N 83 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENN 83 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccC
Confidence 3455556678888888999999866332 233332 22344443 32 2457889999999999999876
Q ss_pred CCCCeeeeeecCCCCCceEEEECC---CCcEEEEeecCCcEEEEECCCCcE
Q 023822 193 EKGPFDIFSVGGDISDANVVKFSN---DGRLMLLTTMEGHIHVLDSFRGTL 240 (276)
Q Consensus 193 ~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~ 240 (276)
.. ++..+ -...++++.+-. ...-|+..+.+..|.-||..-.+.
T Consensus 84 ~d----~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 84 SD----LFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred ch----hhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 54 22222 224566666532 122344445566788888544443
No 466
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.04 E-value=4.2 Score=33.18 Aligned_cols=152 Identities=14% Similarity=0.018 Sum_probs=0.0
Q ss_pred CCeEEEeccCCCCCceEEEEccCCceeeeecccC--cceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecC--
Q 023822 88 PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH--DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-- 163 (276)
Q Consensus 88 ~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-- 163 (276)
+..+.++.. +|.|.-.|..+++.+.....-. ..+..-.+..+|+ ++.++.++.++.+|.++++..-......
T Consensus 68 dg~v~~~~~---~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~ 143 (370)
T COG1520 68 DGTVYVGTR---DGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSP 143 (370)
T ss_pred CCeEEEecC---CCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCe
Q ss_pred -CCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec--CCcEEEEECCCCcE
Q 023822 164 -RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM--EGHIHVLDSFRGTL 240 (276)
Q Consensus 164 -~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~ 240 (276)
......-.++.++..+.++.+.-.|..+++.......... ....+..-.. .....++.+.. ++.+.-.|..+|+.
T Consensus 144 ~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~ 221 (370)
T COG1520 144 YYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTL 221 (370)
T ss_pred EEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCc-cccccccCce-eecceEEEecCCCcceEEEEEccCCcE
Q ss_pred EEEee
Q 023822 241 LSTYN 245 (276)
Q Consensus 241 ~~~~~ 245 (276)
.-..+
T Consensus 222 ~w~~~ 226 (370)
T COG1520 222 KWSQK 226 (370)
T ss_pred eeeee
No 467
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.82 E-value=1.5 Score=36.79 Aligned_cols=27 Identities=4% Similarity=-0.097 Sum_probs=20.8
Q ss_pred CcEEEEEEcCCCCEEEEeecCCeEEEE
Q 023822 35 GRISSMDFHKSSSYLVTASDDESIRLY 61 (276)
Q Consensus 35 ~~v~~~~~~~~~~~l~~~~~d~~i~iw 61 (276)
-.|..+..++.|..++-++.+|.+.++
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEE
Confidence 357778889999999988888855443
No 468
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=92.74 E-value=6.6 Score=34.66 Aligned_cols=170 Identities=15% Similarity=0.112 Sum_probs=88.2
Q ss_pred eeeeeceEEEEEeccCCeEEEeccCC-CCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEecc
Q 023822 73 NSKKYGVDLVCFTSHPTTVIYSSKNG-WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR 151 (276)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~l~~~~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 151 (276)
..+...+..+.|+|++..++.....+ ....+.+.+.. + .+..+...+....|+|+++.++....+...+.-
T Consensus 56 ~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~--- 127 (620)
T COG1506 56 LTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRD--- 127 (620)
T ss_pred cccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCCCCCeEEEEecccccccC---
Confidence 34556788899999999999888322 12334444443 2 333456677888999999988772222211000
Q ss_pred CceeeeeEeecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCc--
Q 023822 152 AEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH-- 229 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-- 229 (276)
+. ......-..+.+...+ +....+.+.|..+ . ..........+....++++++.++....+..
T Consensus 128 -~~---~~~~~~~~~~~~~~~g-----~~~~~l~~~d~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (620)
T COG1506 128 -GG---DHLFVDRLPVWFDGRG-----GERSDLYVVDIES-K-----LIKLGLGNLDVVSFATDGDGRLVASIRLDDDAD 192 (620)
T ss_pred -Cc---eeeeecccceeecCCC-----CcccceEEEccCc-c-----cccccCCCCceeeeeeCCCCceeEEeeeccccC
Confidence 00 0000000112222222 1134455555543 1 2222334445666777777776666543331
Q ss_pred -----EEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEe
Q 023822 230 -----IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 269 (276)
Q Consensus 230 -----i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 269 (276)
..++...++....... ....+..+.|.++|+.++..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~gk~~~~~ 233 (620)
T COG1506 193 PWVTNLYVLIEGNGELESLTP----GEGSISKLAFDADGKSIALL 233 (620)
T ss_pred CceEeeEEEecCCCceEEEcC----CCceeeeeeeCCCCCeeEEe
Confidence 3333333444443333 45668889999999855443
No 469
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.72 E-value=5 Score=33.25 Aligned_cols=141 Identities=14% Similarity=0.102 Sum_probs=83.5
Q ss_pred CCCEEEEeecCCeEEEEEccCCe-----eeeeeeeeeeceEEEEEec-----cCCeEEEeccCCCCCceEEEEccCC--c
Q 023822 45 SSSYLVTASDDESIRLYDVTAAT-----CLKTINSKKYGVDLVCFTS-----HPTTVIYSSKNGWDESLRLLSLHDN--K 112 (276)
Q Consensus 45 ~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~~~~d~~i~~~d~~~~--~ 112 (276)
+...+++|+..|.++||+..... .+.+. .-+.+|..+..-. ....|++-. -..+.+|.+... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVLh----P~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVLH----PRKLSVYSVSLVDGT 110 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEec----CCEEEEEEEEecCCC
Confidence 34589999999999999986433 11111 2235677776542 234555554 788888887322 1
Q ss_pred -------eeeeecccCc--ceEEEEecc----C-CCEEEEeeCCCeEEEEeccCceeeeeEeecC-CCeeEecCCCcEEE
Q 023822 113 -------YLRYFKGHHD--RVVSLSLCS----S-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFA 177 (276)
Q Consensus 113 -------~~~~~~~~~~--~i~~~~~~~----~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ 177 (276)
.+..+..|.- ....++.-| . ..++.+=+.||.+.+|+-+.......+...- ...+.+.+....++
T Consensus 111 ~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfv 190 (418)
T PF14727_consen 111 VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFV 190 (418)
T ss_pred cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEE
Confidence 1222223332 223333322 2 3578888999999999977655444442222 22577777665555
Q ss_pred Eee-CCeEEEEecc
Q 023822 178 VAF-GGYIRMFDAR 190 (276)
Q Consensus 178 ~~~-d~~i~~~d~~ 190 (276)
+++ +..+.-|...
T Consensus 191 t~sss~~l~~Yky~ 204 (418)
T PF14727_consen 191 TASSSWTLECYKYQ 204 (418)
T ss_pred EecCceeEEEecHH
Confidence 554 7788888764
No 470
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.64 E-value=0.92 Score=39.19 Aligned_cols=71 Identities=18% Similarity=0.301 Sum_probs=43.9
Q ss_pred ccCCeEEEeccCCCCCceEEEEccC----Cceeee-----------ecc-----------cCcceEEEEecc----CCCE
Q 023822 86 SHPTTVIYSSKNGWDESLRLLSLHD----NKYLRY-----------FKG-----------HHDRVVSLSLCS----SKDC 135 (276)
Q Consensus 86 ~~~~~l~~~~~~~~d~~i~~~d~~~----~~~~~~-----------~~~-----------~~~~i~~~~~~~----~~~~ 135 (276)
++...++++.. ||.+....... +..... +.+ .......+++++ +..+
T Consensus 156 ~~~~~l~v~~~---dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (547)
T PF11715_consen 156 DSEANLVVSLQ---DGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTF 232 (547)
T ss_dssp -SSSBEEEEES---SS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTE
T ss_pred cCCCEEEEEEC---CCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCE
Confidence 36777788777 88888887654 211111 000 123345566665 6779
Q ss_pred EEEeeCCCeEEEEeccCceeeeeE
Q 023822 136 FISGSLDRTVLLWDQRAEKCQGLL 159 (276)
Q Consensus 136 l~~~~~d~~i~iwd~~~~~~~~~~ 159 (276)
+++.+.|+++++||+.+++++...
T Consensus 233 l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 233 LFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EEEEETTSEEEEEETTTTCEEEEE
T ss_pred EEEEeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999999986554
No 471
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.60 E-value=4 Score=31.75 Aligned_cols=150 Identities=14% Similarity=0.079 Sum_probs=86.3
Q ss_pred ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecc--cCcceEEEEeccCCCEEEEeeCCCeEEEEeccCcee
Q 023822 78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKG--HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC 155 (276)
Q Consensus 78 ~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 155 (276)
-+..+.++ +++...+.. +.-+++.|+.+......+.. ..+.-.+ |.-.|++...+..|.-+.+.|+.....
T Consensus 88 l~~Dv~vs--e~yvyvad~---ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 88 LFADVRVS--EEYVYVADW---SSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhheeEec--ccEEEEEcC---CCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCC
Confidence 45566664 556666665 78899999987654333221 1122233 344788888888777788889876644
Q ss_pred eeeE---eecC--CCeeEecCCCcEEEEe-eCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCc
Q 023822 156 QGLL---RVQG--RPAAAYDDQGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH 229 (276)
Q Consensus 156 ~~~~---~~~~--~~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 229 (276)
.... .... ...++.+ |+...++ .|+-+.+-|+.....+.+. -... ....+.++..+++-.+++.. +--
T Consensus 161 P~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli-~~~n-~g~g~~sv~vsdnr~y~vvy--~eg 234 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLI-GSYN-TGPGTYSVSVSDNRAYLVVY--DEG 234 (370)
T ss_pred ceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEE-EEEe-cCCceEEEEecCCeeEEEEc--ccc
Confidence 3322 1111 1233443 4444444 4888999999887653322 2211 12257777777776555544 333
Q ss_pred EEEEECCCCcE
Q 023822 230 IHVLDSFRGTL 240 (276)
Q Consensus 230 i~i~d~~~~~~ 240 (276)
+.+-|..+.+.
T Consensus 235 vlivd~s~~ss 245 (370)
T COG5276 235 VLIVDVSGPSS 245 (370)
T ss_pred eEEEecCCCCC
Confidence 66666655543
No 472
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.48 E-value=1.1 Score=36.90 Aligned_cols=151 Identities=12% Similarity=0.067 Sum_probs=83.1
Q ss_pred ecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeee-E-eecC------CC-eeEecCCC-cEEEEeeCCeEEE
Q 023822 117 FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL-L-RVQG------RP-AAAYDDQG-LVFAVAFGGYIRM 186 (276)
Q Consensus 117 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~-~~~~------~~-~~~~~~~~-~~l~~~~d~~i~~ 186 (276)
+......+..+-..||++.+..-+. ..+.++++.+...... + ...+ +. .+..-..+ .+++...||-|.-
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ 294 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ 294 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence 4445566778888999998776665 6788888876543222 1 1111 11 11212233 4555555877766
Q ss_pred E-ecccCCCCCee-eeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCc
Q 023822 187 F-DARKYEKGPFD-IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM 264 (276)
Q Consensus 187 ~-d~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 264 (276)
| |.+....+.+. +..+.-...++..+.=..+.+-+++-+..|.+.++.....+.+-.-. .-..+.-+++||.+.
T Consensus 295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~----~~~~~~~~~~Sp~~~ 370 (733)
T COG4590 295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER----AYQAPQLVAMSPNQA 370 (733)
T ss_pred eeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh----hhcCcceeeeCcccc
Confidence 5 66554332221 11122222334333333344567777888888888754444332222 223566789999999
Q ss_pred EEEEecCC
Q 023822 265 FVISGRVS 272 (276)
Q Consensus 265 ~l~~~~~d 272 (276)
+|++-...
T Consensus 371 ~Ll~e~~g 378 (733)
T COG4590 371 YLLSEDQG 378 (733)
T ss_pred hheeecCC
Confidence 88775443
No 473
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.47 E-value=4.3 Score=31.84 Aligned_cols=165 Identities=13% Similarity=0.146 Sum_probs=91.6
Q ss_pred eEEEEEccCCeeeeeeeee------eeceEEEEEeccC-----CeEEEeccCCCCCceEEEEccCCceeeeeccc-----
Q 023822 57 SIRLYDVTAATCLKTINSK------KYGVDLVCFTSHP-----TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH----- 120 (276)
Q Consensus 57 ~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~-----~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~----- 120 (276)
.|.+||+.+++.++++..+ .+....+.+.... .++..+... .+.|.++|+.+++.-+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~--~~glIV~dl~~~~s~Rv~~~~~~~~p 112 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSG--GPGLIVYDLATGKSWRVLHNSFSPDP 112 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETT--TCEEEEEETTTTEEEEEETCGCTTS-
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCC--cCcEEEEEccCCcEEEEecCCcceec
Confidence 7889999999988887543 3457778887633 244444432 568999999988755443321
Q ss_pred --------------CcceEEEEecc---CCCEEEEeeCCCeEEEEeccC-----c---------eeeeeE-e-ecCCCee
Q 023822 121 --------------HDRVVSLSLCS---SKDCFISGSLDRTVLLWDQRA-----E---------KCQGLL-R-VQGRPAA 167 (276)
Q Consensus 121 --------------~~~i~~~~~~~---~~~~l~~~~~d~~i~iwd~~~-----~---------~~~~~~-~-~~~~~~~ 167 (276)
...+..++.+| ++++|.-....+ -++|.+.+ . ..++.+ . ......+
T Consensus 113 ~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~ 191 (287)
T PF03022_consen 113 DAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGM 191 (287)
T ss_dssp SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEE
T ss_pred cccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceE
Confidence 12255556554 555555544332 12333221 1 011122 1 1234578
Q ss_pred EecCCCcEEEEee-CCeEEEEecccCCCC-CeeeeeecCC-CCCceEEEECC--CCcEEEEe
Q 023822 168 AYDDQGLVFAVAF-GGYIRMFDARKYEKG-PFDIFSVGGD-ISDANVVKFSN--DGRLMLLT 224 (276)
Q Consensus 168 ~~~~~~~~l~~~~-d~~i~~~d~~~~~~~-~~~~~~~~~~-~~~i~~~~~~~--~~~~l~~~ 224 (276)
+++++|.++.+-- .+.|..|+..+.-.. ...+...... -..+..+.+.+ +|.+.+..
T Consensus 192 ~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 192 AIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred EECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 8899998887776 799999998863211 2222222222 45678889988 76655544
No 474
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.45 E-value=7.2 Score=34.43 Aligned_cols=89 Identities=12% Similarity=0.170 Sum_probs=50.3
Q ss_pred CCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee-----eEeecCCCeeEecCCCc
Q 023822 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-----LLRVQGRPAAAYDDQGL 174 (276)
Q Consensus 100 d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~ 174 (276)
...|+||++. |..+..+.-....+-.+.|+.+. .|+....+|++++|++-...... ......+..+.+..+|-
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence 4568888864 45444443334478889998665 46677889999999976433222 11222333444444554
Q ss_pred EEEEeeCCeEEEEecc
Q 023822 175 VFAVAFGGYIRMFDAR 190 (276)
Q Consensus 175 ~l~~~~d~~i~~~d~~ 190 (276)
.+.+.++.-+.+-+..
T Consensus 141 avlt~~g~v~~i~~~~ 156 (829)
T KOG2280|consen 141 AVLTVSGQVILINGVE 156 (829)
T ss_pred EEEecCCcEEEEcCCC
Confidence 4444433444444433
No 475
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.40 E-value=9.9 Score=35.88 Aligned_cols=166 Identities=12% Similarity=0.160 Sum_probs=95.4
Q ss_pred eeehHHHhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEE--------e
Q 023822 14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCF--------T 85 (276)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~--------~ 85 (276)
+.++++.+..+. |...=..+-+-|.=+..-. +-|+.+.+|+.+++.....+.+....|..+.. .
T Consensus 65 ~~IP~el~eq~~-------~~~~~~~mGiFpeI~RaWi-TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv 136 (1311)
T KOG1900|consen 65 VNIPDELLEQFS-------NIECKTDMGIFPEIGRAWI-TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFV 136 (1311)
T ss_pred ccCCHHHHHHhc-------CcceeeeeccchhhcceEE-EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcch
Confidence 455555554444 2222233444554333322 35788999999998877777776666665543 3
Q ss_pred ccCCeEEEeccCCCCCceEEEEccCCce---e------eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEecc----C
Q 023822 86 SHPTTVIYSSKNGWDESLRLLSLHDNKY---L------RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR----A 152 (276)
Q Consensus 86 ~~~~~l~~~~~~~~d~~i~~~d~~~~~~---~------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~----~ 152 (276)
|.=+++++.+. --.|.++-+.-.+. . .++......|.++....+|+.|++| .|| .+|.+- .
T Consensus 137 ~~IqhlLvvaT---~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~ 210 (1311)
T KOG1900|consen 137 PEIQHLLVVAT---PVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAED 210 (1311)
T ss_pred hhhheeEEecc---cceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccC
Confidence 33345555555 56666665432211 1 1122234568888877788766655 455 445432 1
Q ss_pred c----eee-------------eeE------eecCCCeeEecCCCcEEEEee-CCeEEEEecccCC
Q 023822 153 E----KCQ-------------GLL------RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYE 193 (276)
Q Consensus 153 ~----~~~-------------~~~------~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~ 193 (276)
+ ++. ..+ +..++..+.++....++.+-+ .+.|.+||+....
T Consensus 211 gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 211 GWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred chhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCC
Confidence 1 010 001 234567788888777777666 7999999998743
No 476
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.39 E-value=6.1 Score=33.41 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=28.2
Q ss_pred CceEEEECCCC---cEEEEeecCCcEEEEECCCCcEEEEe
Q 023822 208 DANVVKFSNDG---RLMLLTTMEGHIHVLDSFRGTLLSTY 244 (276)
Q Consensus 208 ~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~ 244 (276)
.+..++|+|+. ..|..-+.|+.||+||+.....+...
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence 46678899975 56777888999999998876655433
No 477
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=92.16 E-value=7.7 Score=34.06 Aligned_cols=156 Identities=11% Similarity=0.094 Sum_probs=0.0
Q ss_pred CCcEEEEEEcCCCCEEEEeecCCeEEEEEc---------cCCeeeeeeeeeeeceEEEEEeccCCeEEEecc-CCCCCce
Q 023822 34 NGRISSMDFHKSSSYLVTASDDESIRLYDV---------TAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK-NGWDESL 103 (276)
Q Consensus 34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~d~~i 103 (276)
.+.|-.+.|.++++.+++.-.+|.|.+||. .....-..-..+..-|.....-....++++.+. .+..-..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Q ss_pred EEEEc-cCCceeeeec---ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeec-------CCCeeEecCC
Q 023822 104 RLLSL-HDNKYLRYFK---GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-------GRPAAAYDDQ 172 (276)
Q Consensus 104 ~~~d~-~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~ 172 (276)
+++.+ ........+. .+........|+.+...|.-- .+++|.+|++...+..+.+... .-..-...|.
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s 287 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPS 287 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCC
Q ss_pred CcEEEEeeCCeEEEEecc
Q 023822 173 GLVFAVAFGGYIRMFDAR 190 (276)
Q Consensus 173 ~~~l~~~~d~~i~~~d~~ 190 (276)
...+..+.++.|++.|+.
T Consensus 288 ~nRvLLs~~nkIyLld~~ 305 (670)
T PF10395_consen 288 PNRVLLSVNNKIYLLDLK 305 (670)
T ss_pred CCeEEEEcCCEEEEEeeh
No 478
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.05 E-value=4.5 Score=31.15 Aligned_cols=153 Identities=12% Similarity=0.091 Sum_probs=97.5
Q ss_pred ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee
Q 023822 78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG 157 (276)
Q Consensus 78 ~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 157 (276)
.-..++-.||+..-+++.. .+.|--.|..+++....-.+....-..+..-||+..-++-+.. -|.-.|-++.+...
T Consensus 63 ap~dvapapdG~VWft~qg---~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~ 138 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQG---TGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR 138 (353)
T ss_pred CccccccCCCCceEEecCc---cccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE
Confidence 4556777788877777765 7788888888888766555555566778888888866554433 56666655544332
Q ss_pred eE-----eecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEE
Q 023822 158 LL-----RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV 232 (276)
Q Consensus 158 ~~-----~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 232 (276)
.- .........|++.|++-.++..|.---.|... ..+.++... .....+.|+..|+|...++.-.++.|-.
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~---~~i~vfpaP-qG~gpyGi~atpdGsvwyaslagnaiar 214 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPAR---NVISVFPAP-QGGGPYGICATPDGSVWYASLAGNAIAR 214 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeeccccceecCccc---CceeeeccC-CCCCCcceEECCCCcEEEEeccccceEE
Confidence 21 12234578899999887777643322222222 112222222 3345677899999998887777778888
Q ss_pred EECCCC
Q 023822 233 LDSFRG 238 (276)
Q Consensus 233 ~d~~~~ 238 (276)
.|..++
T Consensus 215 idp~~~ 220 (353)
T COG4257 215 IDPFAG 220 (353)
T ss_pred cccccC
Confidence 887766
No 479
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.03 E-value=6.6 Score=32.99 Aligned_cols=107 Identities=9% Similarity=0.031 Sum_probs=60.8
Q ss_pred CCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCee--eeeee-----eeeeceEEEEEeccC------CeEEEeccC--
Q 023822 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC--LKTIN-----SKKYGVDLVCFTSHP------TTVIYSSKN-- 97 (276)
Q Consensus 33 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~-----~~~~~v~~~~~~~~~------~~l~~~~~~-- 97 (276)
.-..-+.|+|.||+++|++--..|.|++++..++.. +..+. ........++++|+- .+|.+....
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 345678899999998777765469999998654432 21111 124668899999874 344444210
Q ss_pred C-----CCCceEEEEccCC--c---eeeeec------ccCcceEEEEeccCCCEEEEeeC
Q 023822 98 G-----WDESLRLLSLHDN--K---YLRYFK------GHHDRVVSLSLCSSKDCFISGSL 141 (276)
Q Consensus 98 ~-----~d~~i~~~d~~~~--~---~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~ 141 (276)
+ ....|.-|.+... . ....+. .|. -..|.|.||+.++++.+.
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECC
Confidence 0 0234444544321 1 111121 233 346889999986665544
No 480
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.97 E-value=6.5 Score=34.89 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=42.7
Q ss_pred CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEE
Q 023822 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 107 (276)
Q Consensus 34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d 107 (276)
..-++++.-+|.++.++.+..||.|++|+....+....... ..+-..+.|...| ++++.. |..+.-|.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~-~~p~~nlv~tnhg--l~~~ts---drr~la~~ 81 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE-AKPKENLVFTNHG--LVTATS---DRRALAWK 81 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh-cCCccceeeeccc--eEEEec---cchhheee
Confidence 34567788889999999999999999999865443222211 1123344554333 444444 66666665
No 481
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.41 E-value=2.5 Score=36.58 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=43.5
Q ss_pred CCCCEEEEeecCCeEEEEEccC----Ceeeeee--ee--------------------eeeceEEEEEec----cCCeEEE
Q 023822 44 KSSSYLVTASDDESIRLYDVTA----ATCLKTI--NS--------------------KKYGVDLVCFTS----HPTTVIY 93 (276)
Q Consensus 44 ~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~--~~--------------------~~~~v~~~~~~~----~~~~l~~ 93 (276)
++...|+.+..||.+....... +...... .. ....+..+++.+ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3667888888999888877654 2111111 00 122345556655 6778888
Q ss_pred eccCCCCCceEEEEccCCceeeee
Q 023822 94 SSKNGWDESLRLLSLHDNKYLRYF 117 (276)
Q Consensus 94 ~~~~~~d~~i~~~d~~~~~~~~~~ 117 (276)
.+. |+.+++||+.+++++.+.
T Consensus 236 l~~---D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSR---DHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EET---TSEEEEEETTTTCEEEEE
T ss_pred EeC---CCeEEEEECCCCeEEEEe
Confidence 888 999999999999986554
No 482
>PLN02153 epithiospecifier protein
Probab=90.95 E-value=7.2 Score=31.40 Aligned_cols=111 Identities=8% Similarity=0.115 Sum_probs=52.3
Q ss_pred CCCEEEEeecC-------CeEEEEEccCCeeeeeeee---eeece-EEEEEeccCCeEEEeccCC--CCCceEEEEccCC
Q 023822 45 SSSYLVTASDD-------ESIRLYDVTAATCLKTINS---KKYGV-DLVCFTSHPTTVIYSSKNG--WDESLRLLSLHDN 111 (276)
Q Consensus 45 ~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~---~~~~v-~~~~~~~~~~~l~~~~~~~--~d~~i~~~d~~~~ 111 (276)
++.+++.|+.+ ..+.+||+.+.+-...-.. ..... ......-+++.++.|+..+ .-..+.+||+.+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 111 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKN 111 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCC
Confidence 35566666653 3577888876543221110 01000 1111222556666666421 1236788888765
Q ss_pred ceee--eecc---cCcceEEEEeccCCCEEEEeeCC-----------CeEEEEeccCcee
Q 023822 112 KYLR--YFKG---HHDRVVSLSLCSSKDCFISGSLD-----------RTVLLWDQRAEKC 155 (276)
Q Consensus 112 ~~~~--~~~~---~~~~i~~~~~~~~~~~l~~~~~d-----------~~i~iwd~~~~~~ 155 (276)
+-.. .+.. ........+..-++++++.|+.+ ..+.+||.++.+-
T Consensus 112 ~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W 171 (341)
T PLN02153 112 EWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKW 171 (341)
T ss_pred EEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeE
Confidence 4321 1110 11111111122356677777753 2477888877643
No 483
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.69 E-value=1.5 Score=32.22 Aligned_cols=50 Identities=16% Similarity=0.286 Sum_probs=37.3
Q ss_pred cEEEEeecCCcEEEEECC--CCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822 219 RLMLLTTMEGHIHVLDSF--RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS 272 (276)
Q Consensus 219 ~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 272 (276)
..|+.+...+.|.+|++. ..+.+.+|. .-+.|..+.++..|+||++--++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~----Tv~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS----TVGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc----chhheeEEEeccccceEEEEEee
Confidence 344444666789999987 445566666 45889999999999999986443
No 484
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.57 E-value=7.7 Score=31.08 Aligned_cols=99 Identities=15% Similarity=0.184 Sum_probs=59.2
Q ss_pred eEEEEeccCCCEEEEeeCC------CeEEEEeccCceeeeeEe-----------------ecCCCeeEecCCCcEEEEee
Q 023822 124 VVSLSLCSSKDCFISGSLD------RTVLLWDQRAEKCQGLLR-----------------VQGRPAAAYDDQGLVFAVAF 180 (276)
Q Consensus 124 i~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~~ 180 (276)
.-+|++.+++.++++.-.+ ..|..++.. ++....+. ..+...++++|+++.|.+..
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 3478887788888777777 789999876 44443331 11233799999998444333
Q ss_pred ------CC--e-------EEEE--ecccCC-CCCeeeeeecC-----CCCCceEEEECCCCcEEEE
Q 023822 181 ------GG--Y-------IRMF--DARKYE-KGPFDIFSVGG-----DISDANVVKFSNDGRLMLL 223 (276)
Q Consensus 181 ------d~--~-------i~~~--d~~~~~-~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~ 223 (276)
|+ . ++++ |..+.. ......+.+.. ....+..+.+-+++++|+.
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 22 1 4444 444311 11122333332 4567889999999987665
No 485
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.15 E-value=8.3 Score=30.78 Aligned_cols=105 Identities=10% Similarity=0.028 Sum_probs=50.0
Q ss_pred cCCeEEEeccCCC--CCceEEEEccCCcee---eeecccCcce--EEEEeccCCCEEEEeeC-----CCeEEEEeccCce
Q 023822 87 HPTTVIYSSKNGW--DESLRLLSLHDNKYL---RYFKGHHDRV--VSLSLCSSKDCFISGSL-----DRTVLLWDQRAEK 154 (276)
Q Consensus 87 ~~~~l~~~~~~~~--d~~i~~~d~~~~~~~---~~~~~~~~~i--~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~ 154 (276)
++..++.++..+. -..+..+|+.+.+.. ..+..-..+. .+++. -++++++.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 5556666664211 135667777665431 1221111111 12222 25666677764 2368888988765
Q ss_pred eeee--Eee-cCCCeeEecCCCcEEEEee-CC----eEEEEecccC
Q 023822 155 CQGL--LRV-QGRPAAAYDDQGLVFAVAF-GG----YIRMFDARKY 192 (276)
Q Consensus 155 ~~~~--~~~-~~~~~~~~~~~~~~l~~~~-d~----~i~~~d~~~~ 192 (276)
-... +.. ......+...++++++.+. ++ .+..||+++.
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 3322 111 1112223334556665554 32 3567887763
No 486
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=90.07 E-value=3.2 Score=25.91 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=29.0
Q ss_pred eecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEe
Q 023822 224 TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 269 (276)
Q Consensus 224 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 269 (276)
+..+|.+.-||..+++..-.+. .-...+.+++++|+.+|+.+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~----~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLD----GLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEE----EESSEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehh----CCCccCeEEEcCCCCEEEEE
Confidence 4567889999998887655555 23467889999999987765
No 487
>PLN02153 epithiospecifier protein
Probab=89.89 E-value=9.1 Score=30.84 Aligned_cols=110 Identities=7% Similarity=0.128 Sum_probs=51.9
Q ss_pred CCCEEEEeecC-----CeEEEEEccCCeeee--eeee---eeeceEEEEEeccCCeEEEeccCCC--------CCceEEE
Q 023822 45 SSSYLVTASDD-----ESIRLYDVTAATCLK--TINS---KKYGVDLVCFTSHPTTVIYSSKNGW--------DESLRLL 106 (276)
Q Consensus 45 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~--~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~--------d~~i~~~ 106 (276)
++.+++.|+.+ ..+.+||..+.+-.. .+.. ........+...+++..+.++.... -..+.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 45666777643 257788887654322 1110 1111122222335566666664210 1257788
Q ss_pred EccCCceeee--ec---ccCcceEEEEeccCCCEEEEeeCC-------------CeEEEEeccCceee
Q 023822 107 SLHDNKYLRY--FK---GHHDRVVSLSLCSSKDCFISGSLD-------------RTVLLWDQRAEKCQ 156 (276)
Q Consensus 107 d~~~~~~~~~--~~---~~~~~i~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~ 156 (276)
|+.+.+-... .. ...... +++. -++++++.++.+ ..+.+||+.+.+-.
T Consensus 165 d~~~~~W~~l~~~~~~~~~r~~~-~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 165 NIADGKWVQLPDPGENFEKRGGA-GFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred ECCCCeEeeCCCCCCCCCCCCcc-eEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence 8876543211 10 011111 2222 256666655432 35888998876544
No 488
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=89.85 E-value=3 Score=25.85 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=24.1
Q ss_pred CCceEEEECCCCcEEEEee-cCCcEEEEECC
Q 023822 207 SDANVVKFSNDGRLMLLTT-MEGHIHVLDSF 236 (276)
Q Consensus 207 ~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~ 236 (276)
...+.|.++|++++|++++ ..+.|++|...
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 4567899999999888776 46789999864
No 489
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.55 E-value=10 Score=31.04 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=19.7
Q ss_pred EEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822 230 IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS 272 (276)
Q Consensus 230 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 272 (276)
+.+||..+.+-...-.. +..... ..+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~l-p~~r~~--~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGEL-PQGLAY--GVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcC-CCCccc--eEEEEeCCEEEEEcCCC
Confidence 45788776654322111 111111 22344567788888764
No 490
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.03 E-value=1.9 Score=21.78 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=19.5
Q ss_pred cCCCcEEEEEEcCCCCEEEEee-cC--CeEEEE
Q 023822 32 DYNGRISSMDFHKSSSYLVTAS-DD--ESIRLY 61 (276)
Q Consensus 32 ~h~~~v~~~~~~~~~~~l~~~~-~d--~~i~iw 61 (276)
.....-....|+|||+.|+-++ .+ |...||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3455678899999999887655 34 555444
No 491
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=88.74 E-value=19 Score=32.89 Aligned_cols=114 Identities=7% Similarity=0.129 Sum_probs=75.5
Q ss_pred CcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCe-----eeeeeeee----------eeceEEEEEeccCCeEEEeccCC
Q 023822 35 GRISSMDFHK-SSSYLVTASDDESIRLYDVTAAT-----CLKTINSK----------KYGVDLVCFTSHPTTVIYSSKNG 98 (276)
Q Consensus 35 ~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~~~ 98 (276)
.+...++|+| +...||.....|.-.||++.... ........ ...-..+.|.++...|+++.
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~--- 222 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN--- 222 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc---
Confidence 4677899999 56689999999999999992111 11111011 12334788988888888887
Q ss_pred CCCceEEEEccCCceee--eecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCc
Q 023822 99 WDESLRLLSLHDNKYLR--YFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAE 153 (276)
Q Consensus 99 ~d~~i~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~ 153 (276)
...+.++|+++..... ........|.++.-+|... +++..+ ...|...|+...
T Consensus 223 -r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~ 278 (765)
T PF10214_consen 223 -RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSS 278 (765)
T ss_pred -CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCC
Confidence 6889999998876533 1223456788888888632 232222 357888887763
No 492
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=88.69 E-value=19 Score=32.87 Aligned_cols=156 Identities=13% Similarity=0.061 Sum_probs=92.8
Q ss_pred eeeeceEEEEEe---c----cCCeEEEeccCCCCCceEEEEccCC---------------ceeeeecc---cCcceEEEE
Q 023822 74 SKKYGVDLVCFT---S----HPTTVIYSSKNGWDESLRLLSLHDN---------------KYLRYFKG---HHDRVVSLS 128 (276)
Q Consensus 74 ~~~~~v~~~~~~---~----~~~~l~~~~~~~~d~~i~~~d~~~~---------------~~~~~~~~---~~~~i~~~~ 128 (276)
....+|..+.|. . ..+.|++-. ...+.|+...-. .++..+.. ...+..+++
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt----~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~ 152 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT----ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVA 152 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc----CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEE
Confidence 345678888887 2 223555544 667777772211 12233321 233677899
Q ss_pred eccC-CCEEEEeeCCCeEEEEeccCceee--eeE-----eecC----------CCeeEecCCCcEEEEeeCCeEEEEecc
Q 023822 129 LCSS-KDCFISGSLDRTVLLWDQRAEKCQ--GLL-----RVQG----------RPAAAYDDQGLVFAVAFGGYIRMFDAR 190 (276)
Q Consensus 129 ~~~~-~~~l~~~~~d~~i~iwd~~~~~~~--~~~-----~~~~----------~~~~~~~~~~~~l~~~~d~~i~~~d~~ 190 (276)
|+|. .+.||.....|...|||+...... ..+ ..+. -..+.|.++...|.++....+.++|++
T Consensus 153 FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~ 232 (765)
T PF10214_consen 153 FNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFE 232 (765)
T ss_pred eccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECC
Confidence 9984 458999999999999999211110 011 0111 125778888888888888899999998
Q ss_pred cCCCCCeeeeeecCCCCCceEEEECCC--CcEEEEeecCCcEEEEECCC
Q 023822 191 KYEKGPFDIFSVGGDISDANVVKFSND--GRLMLLTTMEGHIHVLDSFR 237 (276)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~ 237 (276)
+...... .........|..+.-+|. +..++..+ ..|...++.+
T Consensus 233 ~~~~~~~--l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~ 277 (765)
T PF10214_consen 233 SNWQTEY--LVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS 277 (765)
T ss_pred CCCccch--hccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence 7654322 222334557888888876 33333222 3565666554
No 493
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.67 E-value=2 Score=21.67 Aligned_cols=31 Identities=6% Similarity=0.055 Sum_probs=19.5
Q ss_pred eeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822 76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 106 (276)
Q Consensus 76 ~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~ 106 (276)
...-....|+|||+.|+.++.....|.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3456778999999999988763101444444
No 494
>PLN02193 nitrile-specifier protein
Probab=88.61 E-value=14 Score=31.37 Aligned_cols=191 Identities=8% Similarity=0.056 Sum_probs=87.1
Q ss_pred CCEEEEeecC-------CeEEEEEccCCeeeeeeee---eee--ceEEEEEeccCCeEEEeccCC--CCCceEEEEccCC
Q 023822 46 SSYLVTASDD-------ESIRLYDVTAATCLKTINS---KKY--GVDLVCFTSHPTTVIYSSKNG--WDESLRLLSLHDN 111 (276)
Q Consensus 46 ~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~---~~~--~v~~~~~~~~~~~l~~~~~~~--~d~~i~~~d~~~~ 111 (276)
+.+++.|+.+ ..+.+||+.+.+-.. +.. ... ........-++...+.++..+ .-..+..||+.+.
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 4555666643 247788887654332 111 000 111112222455566665421 1246888888775
Q ss_pred ceeee--ec--ccCcceEEEEeccCCCEEEEeeCCC-----eEEEEeccCceeeeeEee-----cC-CCeeEecCCCcEE
Q 023822 112 KYLRY--FK--GHHDRVVSLSLCSSKDCFISGSLDR-----TVLLWDQRAEKCQGLLRV-----QG-RPAAAYDDQGLVF 176 (276)
Q Consensus 112 ~~~~~--~~--~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~-----~~-~~~~~~~~~~~~l 176 (276)
+-... +. .....-.+++ .-++++++.|+.++ .+..||+.+.+-...-.. .. ...++.. +++++
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~-~gkiy 332 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV-QGKVW 332 (470)
T ss_pred EEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE-CCcEE
Confidence 43221 10 0111111222 23566777776543 467788776653321110 00 1122222 44555
Q ss_pred EEee-C----CeEEEEecccCCCCCeeeeeecCCC-CCceEEEECCCCcEEEEeecC--------------CcEEEEECC
Q 023822 177 AVAF-G----GYIRMFDARKYEKGPFDIFSVGGDI-SDANVVKFSNDGRLMLLTTME--------------GHIHVLDSF 236 (276)
Q Consensus 177 ~~~~-d----~~i~~~d~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~ 236 (276)
+.+. + ..+.+||+.+.+= .........+ ......+..-++++++.|+.. ..+.+||+.
T Consensus 333 viGG~~g~~~~dv~~yD~~t~~W--~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~ 410 (470)
T PLN02193 333 VVYGFNGCEVDDVHYYDPVQDKW--TQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE 410 (470)
T ss_pred EEECCCCCccCceEEEECCCCEE--EEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcC
Confidence 4443 3 5688999876431 1111110001 111111222356777777753 247889988
Q ss_pred CCcEE
Q 023822 237 RGTLL 241 (276)
Q Consensus 237 ~~~~~ 241 (276)
+.+-.
T Consensus 411 t~~W~ 415 (470)
T PLN02193 411 TLQWE 415 (470)
T ss_pred cCEEE
Confidence 77654
No 495
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=88.35 E-value=1.6 Score=20.93 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=20.6
Q ss_pred EEEEeecCCcEEEEECCCCcEEEEe
Q 023822 220 LMLLTTMEGHIHVLDSFRGTLLSTY 244 (276)
Q Consensus 220 ~l~~~~~dg~i~i~d~~~~~~~~~~ 244 (276)
.+++++.+|.+..+|..+|+.+-.+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5777888999999999999887543
No 496
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=88.33 E-value=15 Score=31.31 Aligned_cols=169 Identities=12% Similarity=0.030 Sum_probs=73.8
Q ss_pred cCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCc---ceEEEEec
Q 023822 54 DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHD---RVVSLSLC 130 (276)
Q Consensus 54 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~---~i~~~~~~ 130 (276)
..+...+.|. +|.....+.........+...++|.+++.. ...+..+|+. |+.+..+.-... .-..+...
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~-----~~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l 198 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGS-----GNRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDEL 198 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEE-----BTEEEEE-TT---EEEEEE--TTEE-B-S-EEE-
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEec-----CCceEEEcCC-CCEEEeeecCCcccccccccEEC
Confidence 3455666674 455544444332222225667777776654 5678888875 455444432221 12456778
Q ss_pred cCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCee---------ee-
Q 023822 131 SSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD---------IF- 200 (276)
Q Consensus 131 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~---------~~- 200 (276)
|+|++|+.+........ ....... .-..+.+++.| ..+..||+...-..... ..
T Consensus 199 ~nGn~L~l~~~~~~~~~-----~~~~~~~---~D~Ivevd~tG--------~vv~~wd~~d~ld~~~~~~~~~~~~~~~~ 262 (477)
T PF05935_consen 199 PNGNLLILASETKYVDE-----DKDVDTV---EDVIVEVDPTG--------EVVWEWDFFDHLDPYRDTVLKPYPYGDIS 262 (477)
T ss_dssp TTS-EEEEEEETTEE-T-----S-EE------S-EEEEE-TTS---------EEEEEEGGGTS-TT--TTGGT--SSSSS
T ss_pred CCCCEEEEEeecccccC-----CCCccEe---cCEEEEECCCC--------CEEEEEehHHhCCcccccccccccccccc
Confidence 99998887774222211 0000000 00112222222 34566766542100000 00
Q ss_pred --eecCCCCCceEEEECC-CCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822 201 --SVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYN 245 (276)
Q Consensus 201 --~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 245 (276)
.....-.-++++.+.+ ++.+++++-.-..|...|..+++....+.
T Consensus 263 ~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 263 GSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILG 310 (477)
T ss_dssp -SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred cCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence 0011112478899988 55555555555588899988888877665
No 497
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=88.24 E-value=4.5 Score=25.24 Aligned_cols=42 Identities=19% Similarity=0.128 Sum_probs=30.2
Q ss_pred eeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee
Q 023822 139 GSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF 180 (276)
Q Consensus 139 ~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~ 180 (276)
+..+|.+..||..+++....+ ...-.+.+++++++.++..+.
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence 345688999999998765555 555667899999999888877
No 498
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=88.17 E-value=22 Score=33.02 Aligned_cols=157 Identities=13% Similarity=0.145 Sum_probs=85.9
Q ss_pred CCCceEEEEccCCceeeeecccC----cceEEEEeccCCC--EEEEeeC-----------CCeEEEEecc-CceeeeeEe
Q 023822 99 WDESLRLLSLHDNKYLRYFKGHH----DRVVSLSLCSSKD--CFISGSL-----------DRTVLLWDQR-AEKCQGLLR 160 (276)
Q Consensus 99 ~d~~i~~~d~~~~~~~~~~~~~~----~~i~~~~~~~~~~--~l~~~~~-----------d~~i~iwd~~-~~~~~~~~~ 160 (276)
|-..|++.|..+++.+..+.-.. -.+..+.|+.... +++++.. +|.++.|++- .++.+..++
T Consensus 851 w~s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh 930 (1205)
T KOG1898|consen 851 WVSSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLH 930 (1205)
T ss_pred ccceEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeee
Confidence 34468888888877665543222 2455666665333 3333332 3457777654 344344444
Q ss_pred ecCCC--eeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEEC-CC
Q 023822 161 VQGRP--AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS-FR 237 (276)
Q Consensus 161 ~~~~~--~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~-~~ 237 (276)
...+. ..++.|-...+.++....+++||+...+. ........-+..|+.+.+ .+..+++|...-.++++.. +.
T Consensus 931 ~T~~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~l--LRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~ 1006 (1205)
T KOG1898|consen 931 KTEIPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKL--LRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRRE 1006 (1205)
T ss_pred ccCCCccceEEeccCCEEEEecccEEEEeeCChHHH--HhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecC
Confidence 44433 56788877788888899999999976432 111112222345566665 3456777765545544332 23
Q ss_pred CcEEEEeecCCCCCCceEEEEEC
Q 023822 238 GTLLSTYNVKPVSRNSTLEASFS 260 (276)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~s 260 (276)
++.+..+...+ ....|+.+.+-
T Consensus 1007 ~n~l~~fadD~-~pR~Vt~~~~l 1028 (1205)
T KOG1898|consen 1007 DNQLIVFADDP-VPRHVTALELL 1028 (1205)
T ss_pred CCeEEEEeCCC-ccceeeEEEEe
Confidence 44444554332 33455555443
No 499
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=87.65 E-value=12 Score=29.44 Aligned_cols=191 Identities=12% Similarity=0.056 Sum_probs=99.6
Q ss_pred eEEEEEeccCCeEEEeccCCCCCceEEEEcc------CC-ceeeeecc-----cCcceEEEEeccCC------------C
Q 023822 79 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLH------DN-KYLRYFKG-----HHDRVVSLSLCSSK------------D 134 (276)
Q Consensus 79 v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~------~~-~~~~~~~~-----~~~~i~~~~~~~~~------------~ 134 (276)
-+.++++|.+..-++... .+...+||.. .. ..+.++.. .....+.+.|+... .
T Consensus 25 ~WGia~~p~~~~WVadng---T~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTG---TGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred cceeEecCCCCEEEecCC---cceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 568899998866665554 7889999986 11 22223331 12346667776422 2
Q ss_pred EEEEeeCCCeEEEEeccCcee-----eeeEee---cC-CCeeEec--CCCcEEEEee--CCeEEEEecccCCCCCeeeee
Q 023822 135 CFISGSLDRTVLLWDQRAEKC-----QGLLRV---QG-RPAAAYD--DQGLVFAVAF--GGYIRMFDARKYEKGPFDIFS 201 (276)
Q Consensus 135 ~l~~~~~d~~i~iwd~~~~~~-----~~~~~~---~~-~~~~~~~--~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~ 201 (276)
.++.+++||+|.-|...-... ...+.. .. ...+++. ..+.+|.... .++|.+||-.-.+.....-+.
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 368889999999998533222 111211 11 1234444 3345555554 799999986543210000000
Q ss_pred ---ecCCCCC-----------ceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECC------
Q 023822 202 ---VGGDISD-----------ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP------ 261 (276)
Q Consensus 202 ---~~~~~~~-----------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~------ 261 (276)
+...-.+ |+-..-.++++.=+.|..-|.|-+||+ +|+.++++... +.-...+.++..|
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~-g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASS-GRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccC-CcccCCceeeeChhhhCCC
Confidence 0010011 111111222222233344578999995 78888888532 2344556666654
Q ss_pred CCcEEEEecCCCC
Q 023822 262 EGMFVISGRVSPF 274 (276)
Q Consensus 262 ~g~~l~~~~~dg~ 274 (276)
.|.+|+---.||+
T Consensus 260 sg~lLVGNFGDG~ 272 (336)
T TIGR03118 260 SGALLVGNFGDGT 272 (336)
T ss_pred CCCeEEeecCCce
Confidence 3455554444554
No 500
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=87.59 E-value=14 Score=30.01 Aligned_cols=140 Identities=12% Similarity=0.038 Sum_probs=0.0
Q ss_pred EEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee----------cCCCeeEecCCC-cEEEEeeCCeEEEEecccCCC
Q 023822 126 SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV----------QGRPAAAYDDQG-LVFAVAFGGYIRMFDARKYEK 194 (276)
Q Consensus 126 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------~~~~~~~~~~~~-~~l~~~~d~~i~~~d~~~~~~ 194 (276)
++..+.+.....++..+|-|..-+............ ...-.++|...+ .++++-.---+...+...+..
T Consensus 69 ~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a 148 (376)
T KOG1520|consen 69 YTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLA 148 (376)
T ss_pred eEEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEecceeeEEECCCCCcc
Q ss_pred CCeeeeeecCCCCCceEEEECCCCc-----------------EEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEE
Q 023822 195 GPFDIFSVGGDISDANVVKFSNDGR-----------------LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 257 (276)
Q Consensus 195 ~~~~~~~~~~~~~~i~~~~~~~~~~-----------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 257 (276)
...........-.-.+.+..+++|. .++.+..+|++.-||..+....-.+. .-.-.+.+
T Consensus 149 ~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld----~L~F~NGl 224 (376)
T KOG1520|consen 149 ELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLD----GLYFPNGL 224 (376)
T ss_pred eeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhh----cccccccc
Q ss_pred EECCCCcEEEEe
Q 023822 258 SFSPEGMFVISG 269 (276)
Q Consensus 258 ~~s~~g~~l~~~ 269 (276)
+.|||+.+++.+
T Consensus 225 aLS~d~sfvl~~ 236 (376)
T KOG1520|consen 225 ALSPDGSFVLVA 236 (376)
T ss_pred cCCCCCCEEEEE
Done!