BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023823
(276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LTM|A Chain A, Solution Nmr Structure Of Nfu1 Iron-Sulfur Cluster
Scaffold Homolog From Homo Sapiens, Northeast Structural
Genomics Consortium (Nesg) Target Hr2876b
Length = 107
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 71/93 (76%), Gaps = 1/93 (1%)
Query: 75 MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 134
MFIQTQ TPNP+SL F PGKPV+E + DFP AA SPLA+ L+ ++G+ VFFG D
Sbjct: 11 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDS 70
Query: 135 ITVTK-SEDTSWDLLKPEIFAAIMDFYSSGQPL 166
ITVTK +E+ W+LLKP+I+A IMDF++SG PL
Sbjct: 71 ITVTKENEELDWNLLKPDIYATIMDFFASGLPL 103
>pdb|1VEH|A Chain A, Solution Structure Of Rsgi Ruh-018, A Nifu-Like Domain Of
Hirip5 Protein From Mouse Cdna
Length = 92
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 62/74 (83%), Gaps = 2/74 (2%)
Query: 187 TVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIEN 246
VAMIKELL+TRIRP VQ+DGGD+ YRGF E G V+L++QG+C+ CPSS +TLKSGI+N
Sbjct: 14 VVAMIKELLDTRIRPTVQEDGGDVIYRGF--EDGIVRLKLQGSCTSCPSSIITLKSGIQN 71
Query: 247 MLMHYVPEVKSVEQ 260
ML Y+PEV+ VEQ
Sbjct: 72 MLQFYIPEVEGVEQ 85
>pdb|1XHJ|A Chain A, Solution Structure Of The Staphylococcus Epidermidis
Protein Se0630. Northest Structural Genomics Consortium
Target Ser8
Length = 88
Score = 64.7 bits (156), Expect = 5e-11, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 191 IKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMH 250
+ E++E R+RP + DGGD D E G VKL++ GAC CPSS++TLK+GIE L
Sbjct: 12 VAEVIE-RLRPFLLRDGGDCTL--VDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHE 68
Query: 251 YVPEVKSVEQ 260
VP V VEQ
Sbjct: 69 EVPGVIEVEQ 78
>pdb|2Z51|A Chain A, Crystal Structure Of Arabidopsis Cnfu Involved In Iron-
Sulfur Cluster Biosynthesis
Length = 154
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 199 IRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSV 258
IRP + DGG++ D V++++QGAC CPSS++T+K GIE LM +PE+ +V
Sbjct: 16 IRPYLMSDGGNVALHEID--GNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAV 73
Query: 259 EQELDAE 265
E D E
Sbjct: 74 EALPDEE 80
>pdb|2JNV|A Chain A, Solution Structure Of C-Terminal Domain Of Nifu-Like
Protein From Oryza Sativa
Length = 91
Score = 61.2 bits (147), Expect = 6e-10, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 187 TVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIEN 246
T ++ +L+ ++RP + DGGD+ + V+L++QGAC CPSS +T+K GIE
Sbjct: 6 TAGNVESVLD-QVRPYLTADGGDVALH--EIAGNVVRLKLQGACGSCPSSLITIKRGIER 62
Query: 247 MLMHYVPEVKSVEQELDAE 265
LM +P+V +VE D E
Sbjct: 63 RLMEKIPDVAAVEPVTDKE 81
>pdb|2LTL|A Chain A, Solution Nmr Structure Of Nifu-Like Protein From
Saccharomyces Cerevisiae, Northeast Structural Genomics
Consortium (Nesg) Target Yr313a
Length = 119
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 72 RRTMFIQTQPTPNPSSLMFYP--GKPVMEVGSADF----PNARAAMNSPLAKSLY-GVDG 124
+R + I+T TPN ++L F G+ + GS + +S LA+ ++ G
Sbjct: 14 QRLIHIKTLTTPNENALKFLSTDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPG 73
Query: 125 ITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLF 167
+ + G DF+T+ K W+ +KPEI + + G+ +
Sbjct: 74 VESLMIGDDFLTINKDRMVHWNSIKPEIIDLLTKQLAYGEDVI 116
>pdb|2K1H|A Chain A, Solution Nmr Structure Of Ser13 From Staphylococcus
Epidermidis. Northeast Structural Genomics Consortium
Target Ser13
Length = 94
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 24/34 (70%)
Query: 119 LYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEI 152
L+ ++G+ +F+ DFI++ K ++ +W+ L P+I
Sbjct: 45 LFEIEGVKSIFYVLDFISIDKEDNANWNELLPQI 78
>pdb|1PQX|A Chain A, Solution Nmr Structure Of Staphylococcus Aureus Protein
Sav1430. Northeast Strucutral Genomics Consortium Target
Zr18
Length = 91
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 119 LYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAA 155
+ V+G+ +F DFI+V K D +W+ + P++ A
Sbjct: 45 ILKVEGVKSIFHVMDFISVDKENDANWETVLPKVEAV 81
>pdb|2FFM|A Chain A, X-Ray Crystal Structure Of Protein Sav1430 From
Staphylococcus Aureus. Northeast Structural Genomics
Consortium Target Zr18
Length = 91
Score = 30.8 bits (68), Expect = 0.88, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 122 VDGITRVFFGSDFITVTKSEDTSWDLLKPEIFA 154
V+G+ +F DFI+V K D +W+ + P++ A
Sbjct: 48 VEGVKSIFHVXDFISVDKENDANWETVLPKVEA 80
>pdb|4FTE|A Chain A, Crystal Structure Of The D75n Mutant Capsid Of Flock House
Virus
pdb|4FTE|B Chain B, Crystal Structure Of The D75n Mutant Capsid Of Flock House
Virus
pdb|4FTE|C Chain C, Crystal Structure Of The D75n Mutant Capsid Of Flock House
Virus
Length = 407
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 18/145 (12%)
Query: 86 SSLMFYPG-----KPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVF---FGSDFI-- 135
S+LM + G K +++ + FP A S L +L G+DG+ V F FI
Sbjct: 179 SNLMQFAGSITVWKCPVKLSTVQFPVATDPATSSLVHTLVGLDGVLAVGPDNFSESFIKG 238
Query: 136 TVTKSEDTSWDLLKPEIFAAI-------MDFYSSGQPLFLDSETAAAKDTAINEDDSETV 188
++S D +I I + S+GQP +DS A A + + +T+
Sbjct: 239 VFSQSACNEPDFEFNDILEGIQTLPPANVSLGSTGQPFTMDSG-AEATSGVVGWGNMDTI 297
Query: 189 AMIKELLETRIRPAVQDDGGDIEYR 213
+ E + A+ IEYR
Sbjct: 298 VIRVSAPEGAVNSAILKAWSCIEYR 322
>pdb|4FTS|A Chain A, Crystal Structure Of The N363t Mutant Of The Flock House
Virus Capsid
pdb|4FTS|B Chain B, Crystal Structure Of The N363t Mutant Of The Flock House
Virus Capsid
pdb|4FTS|C Chain C, Crystal Structure Of The N363t Mutant Of The Flock House
Virus Capsid
Length = 407
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 18/145 (12%)
Query: 86 SSLMFYPG-----KPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVF---FGSDFI-- 135
S+LM + G K +++ + FP A S L +L G+DG+ V F FI
Sbjct: 179 SNLMQFAGSITVWKCPVKLSTVQFPVATDPATSSLVHTLVGLDGVLAVGPDNFSESFIKG 238
Query: 136 TVTKSEDTSWDLLKPEIFAAI-------MDFYSSGQPLFLDSETAAAKDTAINEDDSETV 188
++S D +I I + S+GQP +DS A A + + +T+
Sbjct: 239 VFSQSACNEPDFEFNDILEGIQTLPPANVSLGSTGQPFTMDSG-AEATSGVVGWGNMDTI 297
Query: 189 AMIKELLETRIRPAVQDDGGDIEYR 213
+ E + A+ IEYR
Sbjct: 298 VIRVSAPEGAVNSAILKAWSCIEYR 322
>pdb|4FSJ|A Chain A, Crystal Structure Of The Virus Like Particle Of Flock
House Virus
pdb|4FSJ|B Chain B, Crystal Structure Of The Virus Like Particle Of Flock
House Virus
pdb|4FSJ|C Chain C, Crystal Structure Of The Virus Like Particle Of Flock
House Virus
pdb|4FTB|A Chain A, Crystal Structure Of The Authentic Flock House Virus
Particle
pdb|4FTB|B Chain B, Crystal Structure Of The Authentic Flock House Virus
Particle
pdb|4FTB|C Chain C, Crystal Structure Of The Authentic Flock House Virus
Particle
Length = 363
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 18/145 (12%)
Query: 86 SSLMFYPG-----KPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVF---FGSDFI-- 135
S+LM + G K +++ + FP A S L +L G+DG+ V F FI
Sbjct: 179 SNLMQFAGSITVWKCPVKLSTVQFPVATDPATSSLVHTLVGLDGVLAVGPDNFSESFIKG 238
Query: 136 TVTKSEDTSWDLLKPEIFAAI-------MDFYSSGQPLFLDSETAAAKDTAINEDDSETV 188
++S D +I I + S+GQP +DS A A + + +T+
Sbjct: 239 VFSQSACNEPDFEFNDILEGIQTLPPANVSLGSTGQPFTMDSG-AEATSGVVGWGNMDTI 297
Query: 189 AMIKELLETRIRPAVQDDGGDIEYR 213
+ E + A+ IEYR
Sbjct: 298 VIRVSAPEGAVNSAILKAWSCIEYR 322
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,533,766
Number of Sequences: 62578
Number of extensions: 301438
Number of successful extensions: 673
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 12
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)