Query 023823
Match_columns 276
No_of_seqs 206 out of 1252
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 13:23:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023823.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023823hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ltm_A NFU1 iron-sulfur cluste 100.0 2.4E-34 8.4E-39 231.6 0.0 97 73-169 9-106 (107)
2 2ltl_A NIFU-like protein, mito 100.0 2.5E-34 8.5E-39 235.4 0.0 101 69-169 11-118 (119)
3 2k1h_A Uncharacterized protein 100.0 6.7E-31 2.3E-35 207.3 8.8 85 76-161 3-87 (94)
4 1pqx_A Conserved hypothetical 100.0 4.1E-30 1.4E-34 201.7 5.9 82 76-158 3-84 (91)
5 1veh_A NIFU-like protein hirip 99.9 1.3E-28 4.6E-33 193.4 7.2 87 177-265 4-90 (92)
6 1xhj_A Nitrogen fixation prote 99.9 3.3E-27 1.1E-31 184.1 6.8 78 184-264 5-82 (88)
7 2z51_A NIFU-like protein 2, ch 99.9 1.2E-22 4E-27 173.1 5.2 77 188-267 6-82 (154)
8 1th5_A NIFU1; iron-sulfur clus 99.8 3.2E-22 1.1E-26 151.3 4.0 68 187-261 5-73 (74)
9 2z51_A NIFU-like protein 2, ch 99.7 9.1E-18 3.1E-22 142.9 9.8 122 125-261 27-154 (154)
10 3cq1_A Putative uncharacterize 97.7 0.00021 7.1E-09 55.8 8.9 72 187-262 7-81 (103)
11 3lno_A Putative uncharacterize 96.9 0.0024 8.3E-08 50.2 7.1 76 185-262 7-85 (108)
12 1uwd_A Hypothetical protein TM 96.7 0.0056 1.9E-07 47.5 7.8 72 188-262 8-82 (103)
13 3ux2_A MIP18 family protein FA 84.0 1.5 5E-05 35.9 5.1 53 210-263 40-92 (130)
14 4hde_A SCO1/SENC family lipopr 51.1 8.6 0.00029 31.0 2.7 58 205-265 20-79 (170)
15 1xg8_A Hypothetical protein SA 42.6 27 0.00093 27.7 4.1 26 229-255 21-46 (111)
16 1um0_A Chorismate synthase; be 39.1 16 0.00053 34.7 2.6 26 112-137 230-255 (365)
17 3fry_A Probable copper-exporti 37.9 42 0.0014 22.6 4.2 33 221-262 6-39 (73)
18 4ecd_A Chorismate synthase; 4- 26.2 27 0.00091 33.5 1.9 32 111-142 247-278 (398)
19 1qxo_A Chorismate synthase; be 23.1 25 0.00085 33.6 1.1 28 111-138 239-266 (388)
20 1sq1_A Chorismate synthase; st 22.7 32 0.0011 32.6 1.7 27 112-138 227-253 (370)
21 1xvq_A Thiol peroxidase; thior 22.1 61 0.0021 25.7 3.1 51 206-264 33-85 (175)
22 1q1l_A Chorismate synthase; be 21.3 35 0.0012 32.7 1.7 33 103-138 247-279 (401)
23 2zzt_A Putative uncharacterize 20.5 2.7E+02 0.0091 20.7 7.2 26 239-264 59-84 (107)
No 1
>2ltm_A NFU1 iron-sulfur cluster scaffold homolog, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=99.96 E-value=2.4e-34 Score=231.61 Aligned_cols=97 Identities=58% Similarity=1.043 Sum_probs=93.3
Q ss_pred eeEEEEeeCCCCCCceeEeCCcccCCCcceecCChhhhcCcHHHhcccCCCCeeEEEEeCCeEEEEe-cCCCChhhhHHH
Q 023823 73 RTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTK-SEDTSWDLLKPE 151 (276)
Q Consensus 73 R~m~I~~E~TPNPn~LKF~p~~~l~~~gs~~F~~~~~A~~sPLA~~LF~i~gV~sVfi~~dFITVtK-~~~~dW~~Lkp~ 151 (276)
-.||||||+|||||+|||+||+.|++.|+++|++.++|.+||||++||+|+||++||++.||||||| .++.+|+.|+|+
T Consensus 9 ~~~~~qtE~TPNPntLKF~p~~~vl~~gs~eF~~~~~a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~~~~dW~~ikp~ 88 (107)
T 2ltm_A 9 SHMFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDSITVTKENEELDWNLLKPD 88 (107)
Confidence 4699999999999999999999999989999999999999999999999999999999999999999 889999999999
Q ss_pred HHHHHHHHHhcCCCCccc
Q 023823 152 IFAAIMDFYSSGQPLFLD 169 (276)
Q Consensus 152 I~~~I~DflsSG~PVv~e 169 (276)
|+++|++||.+|.|++.+
T Consensus 89 V~~~I~~~~~sG~pvv~~ 106 (107)
T 2ltm_A 89 IYATIMDFFASGLPLVTE 106 (107)
Confidence 999999999999999864
No 2
>2ltl_A NIFU-like protein, mitochondrial; structural genomics, northeast structural consortium, NESG, PSI-biology; NMR {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.5e-34 Score=235.39 Aligned_cols=101 Identities=25% Similarity=0.490 Sum_probs=96.0
Q ss_pred cccceeEEEEeeCCCCCCceeEe-CCcccCCC--c-ceecCChhhhc--CcHHHhccc-CCCCeeEEEEeCCeEEEEecC
Q 023823 69 RVQRRTMFIQTQPTPNPSSLMFY-PGKPVMEV--G-SADFPNARAAM--NSPLAKSLY-GVDGITRVFFGSDFITVTKSE 141 (276)
Q Consensus 69 ~~~~R~m~I~~E~TPNPn~LKF~-p~~~l~~~--g-s~~F~~~~~A~--~sPLA~~LF-~i~gV~sVfi~~dFITVtK~~ 141 (276)
++.+|+||||+|+|||||+|||+ ||++|++. | +++|++.++|. +||||++|| +|+||++||++.|||||||.+
T Consensus 11 ~~~~R~mfIqtE~TPNPntLKF~sp~~~vl~~~~g~t~~f~~~~~a~~~~SPLA~~LF~~i~GV~~Vf~g~DFITVtK~~ 90 (119)
T 2ltl_A 11 MNSQRLIHIKTLTTPNENALKFLSTDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPGVESLMIGDDFLTINKDR 90 (119)
Confidence 45799999999999999999999 99999876 5 89999999988 899999999 999999999999999999999
Q ss_pred CCChhhhHHHHHHHHHHHHhcCCCCccc
Q 023823 142 DTSWDLLKPEIFAAIMDFYSSGQPLFLD 169 (276)
Q Consensus 142 ~~dW~~Lkp~I~~~I~DflsSG~PVv~e 169 (276)
+.+|+.|+|+|+++|++||.+|+|++.+
T Consensus 91 ~~dW~~ikp~I~~~I~e~~~sg~pvv~~ 118 (119)
T 2ltl_A 91 MVHWNSIKPEIIDLLTKQLAYGEDVISK 118 (119)
Confidence 9999999999999999999999998854
No 3
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}
Probab=99.97 E-value=6.7e-31 Score=207.25 Aligned_cols=85 Identities=20% Similarity=0.441 Sum_probs=81.2
Q ss_pred EEEeeCCCCCCceeEeCCcccCCCcceecCChhhhcCcHHHhcccCCCCeeEEEEeCCeEEEEecCCCChhhhHHHHHHH
Q 023823 76 FIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAA 155 (276)
Q Consensus 76 ~I~~E~TPNPn~LKF~p~~~l~~~gs~~F~~~~~A~~sPLA~~LF~i~gV~sVfi~~dFITVtK~~~~dW~~Lkp~I~~~ 155 (276)
+||+|+|||||+|||+||+.+.++++.+|++.+ |.+||||++||+|+||++||++.|||||||.++.+|+.|+|+|+++
T Consensus 3 ~Iqte~TPNPntlKF~~~~~l~~g~s~~f~~~~-a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~~~dW~~ikp~I~~~ 81 (94)
T 2k1h_A 3 IIAISETPNHNTMKVSLSEPRQDNSFTTYTAAQ-EGQPEFINRLFEIEGVKSIFYVLDFISIDKEDNANWNELLPQIENT 81 (94)
T ss_dssp CCCCBCCSSSSCEEEECCCCCTTCCCCEECCCC-TTSCHHHHHHHTSTTEEEEEEETTEEEEEECTTCCHHHHHHHHHHH
T ss_pred eEEeecCCChhcEEEeCCCCcCCCCceecCCcc-ccCCHHHHHhhCCCCeeEEEEeCCEEEEecCCCCCHHHHHHHHHHH
Confidence 689999999999999999998877799999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 023823 156 IMDFYS 161 (276)
Q Consensus 156 I~Dfls 161 (276)
|++|+-
T Consensus 82 I~~~~~ 87 (94)
T 2k1h_A 82 FAKSNL 87 (94)
T ss_dssp HHHHC-
T ss_pred HHHHHH
Confidence 999974
No 4
>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A
Probab=99.96 E-value=4.1e-30 Score=201.67 Aligned_cols=82 Identities=21% Similarity=0.407 Sum_probs=78.8
Q ss_pred EEEeeCCCCCCceeEeCCcccCCCcceecCChhhhcCcHHHhcccCCCCeeEEEEeCCeEEEEecCCCChhhhHHHHHHH
Q 023823 76 FIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAA 155 (276)
Q Consensus 76 ~I~~E~TPNPn~LKF~p~~~l~~~gs~~F~~~~~A~~sPLA~~LF~i~gV~sVfi~~dFITVtK~~~~dW~~Lkp~I~~~ 155 (276)
+||+|+|||||+|||+||+.+.++++.+|++.+ |.+||||++||+|+||++||++.|||||||.++++|+.|+|+|+++
T Consensus 3 ~Iqte~TPNPn~lKF~~~~~l~~g~s~~F~~~~-a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~~~dW~~ikp~V~~~ 81 (91)
T 1pqx_A 3 IISISETPNHNTMKITLSESREGMTSDTYTKVD-DSQPAFINDILKVEGVKSIFHVMDFISVDKENDANWETVLPKVEAV 81 (91)
T ss_dssp CCBCCCCSCSSEEEEECSCCSSCCCCEEESSSC-SSCCHHHHHHHHSTTEEEEEEETTEEEEEECTTSCSTTTHHHHHHH
T ss_pred eEEeecCCChhcEEEeCCcCcCCCCceEeCCcc-ccCCHHHHHhhCCCCeeEEEEeCCEEEEecCCCCCHHHHHHHHHHH
Confidence 689999999999999999998877799999999 9999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 023823 156 IMD 158 (276)
Q Consensus 156 I~D 158 (276)
|++
T Consensus 82 I~~ 84 (91)
T 1pqx_A 82 FEL 84 (91)
T ss_dssp TCS
T ss_pred HHH
Confidence 975
No 5
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=99.95 E-value=1.3e-28 Score=193.44 Aligned_cols=87 Identities=60% Similarity=1.031 Sum_probs=81.7
Q ss_pred cccCCCCchHHHHHHHHHHHhcCCcchhcCCCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcc
Q 023823 177 DTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVK 256 (276)
Q Consensus 177 ~~~~~~~~~el~~~I~~vL~~~IrP~l~~dGGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~ 256 (276)
++.+.++++++.++|+++|+++|||+|++|||||+|++|+ +|+|+|||+|||+|||+|.+||+++||++|++++|||+
T Consensus 4 ~~~~~~~d~~~~~~I~~~L~~~IRP~L~~dGGdvelv~v~--~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~ 81 (92)
T 1veh_A 4 GSSGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFE--DGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVE 81 (92)
T ss_dssp CCSSCSSCCHHHHHHHHHHHHTTHHHHHHHSCCCCEEEEE--TTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCC
T ss_pred ccccCCCchHHHHHHHHHHHHHhhHHHHhcCCeEEEEEEe--CCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCC
Confidence 4556677899999999999999999999999999999998 68999999999999999999999999999999999999
Q ss_pred eEeecCCcc
Q 023823 257 SVEQELDAE 265 (276)
Q Consensus 257 ~V~~~~~~~ 265 (276)
.|+++++++
T Consensus 82 ~V~~v~~~~ 90 (92)
T 1veh_A 82 GVEQVSGPS 90 (92)
T ss_dssp CEEECSCSC
T ss_pred EEEEcCCCC
Confidence 999998765
No 6
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=99.94 E-value=3.3e-27 Score=184.13 Aligned_cols=78 Identities=41% Similarity=0.695 Sum_probs=73.9
Q ss_pred chHHHHHHHHHHHhcCCcchhcCCCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeecCC
Q 023823 184 DSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELD 263 (276)
Q Consensus 184 ~~el~~~I~~vL~~~IrP~l~~dGGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~~~ 263 (276)
+.++.++|+++|++ |||+|++|||||+|++|| +|+|+|||+|||+|||+|++||+++||++|++++|||+.|++++|
T Consensus 5 ~~~~~~~I~~~L~~-IRP~L~~dGGdvelv~v~--~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~v~~ 81 (88)
T 1xhj_A 5 NPTMFDQVAEVIER-LRPFLLRDGGDCTLVDVE--DGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQVFL 81 (88)
T ss_dssp CSCHHHHHHHHHHH-HHHHHHHHSCEEEEEECC--SSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEEEC
T ss_pred hHHHHHHHHHHHHH-hcHHHHhcCCeEEEEEEE--CCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEeccc
Confidence 35689999999997 999999999999999997 799999999999999999999999999999999999999999887
Q ss_pred c
Q 023823 264 A 264 (276)
Q Consensus 264 ~ 264 (276)
+
T Consensus 82 ~ 82 (88)
T 1xhj_A 82 E 82 (88)
T ss_dssp C
T ss_pred c
Confidence 5
No 7
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=99.86 E-value=1.2e-22 Score=173.11 Aligned_cols=77 Identities=39% Similarity=0.733 Sum_probs=72.3
Q ss_pred HHHHHHHHHhcCCcchhcCCCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeecCCcchH
Q 023823 188 VAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDE 267 (276)
Q Consensus 188 ~~~I~~vL~~~IrP~l~~dGGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~~~~~~~ 267 (276)
.++|+++|+ +|||+|++|||||+|++|| +|+|+|||+|+|+|||+|++||+++||++|++++|+|+.|+++.|++++
T Consensus 6 ~e~v~~~L~-~iRP~l~~dGGdvelv~v~--~~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpev~~V~~v~~~~e~ 82 (154)
T 2z51_A 6 EENVESVLD-EIRPYLMSDGGNVALHEID--GNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETG 82 (154)
T ss_dssp HHHHHHHHH-HHHHHHHHTTEEEEEEEEE--TTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCEEEECCSSCCS
T ss_pred HHHHHHHHH-HhChHHHhcCCeEEEEEEE--CCEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCCceEEEEccCchhh
Confidence 578999998 6999999999999999998 6899999999999999999999999999999999999999999877653
No 8
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=99.85 E-value=3.2e-22 Score=151.35 Aligned_cols=68 Identities=21% Similarity=0.404 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcCCcchhcCC-CcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeec
Q 023823 187 TVAMIKELLETRIRPAVQDDG-GDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE 261 (276)
Q Consensus 187 l~~~I~~vL~~~IrP~l~~dG-GdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~ 261 (276)
+.++|+++|++ |||+|++|| |||+|+++| +|+|+|||+|||+|| +||+++||++|++++|||+.|+++
T Consensus 5 ~~~~V~~~L~~-iRP~L~~dGGGdvelv~v~--~g~V~v~l~GaC~gc----~Tlk~gIe~~L~~~vpei~~V~~v 73 (74)
T 1th5_A 5 NEENVEKVLNE-IRPYLAGTGGGGLQFLMIK--GPIVKVRLTGPAAVV----RTVRIAVSKKLREKIPSIQIVQLL 73 (74)
T ss_dssp SHHHHHHHHTT-THHHHTTTTCCCCCCCEEE--TTEEEECCCSSSSSS----SSHHHHHHHHHHHHCTTCSEEEEC
T ss_pred HHHHHHHHHHH-HhHHHHhcCCCcEEEEEEe--CCEEEEEEecCCcch----HHHHHHHHHHHHHHCCCCcEEEeC
Confidence 47899999996 999999999 999999998 789999999999999 699999999999999999999876
No 9
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=99.73 E-value=9.1e-18 Score=142.93 Aligned_cols=122 Identities=20% Similarity=0.293 Sum_probs=88.4
Q ss_pred eeEEEEeCCeEEEEecCC-----CChhhhHHHHHHHHHHHHhcCCCCcccchhhhhccccCCCCchHHHHHHHHHHHhcC
Q 023823 125 ITRVFFGSDFITVTKSED-----TSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRI 199 (276)
Q Consensus 125 V~sVfi~~dFITVtK~~~-----~dW~~Lkp~I~~~I~DflsSG~PVv~e~~~~~~~~~~~~~~~~el~~~I~~vL~~~I 199 (276)
|.=|-+.++.|.|.-... ..=..++.-|...|.+++.. +.... +..+.. ...+...++|+++|+ .|
T Consensus 27 velv~v~~~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpe----v~~V~--~v~~~~--e~l~L~~~~v~~~L~-~i 97 (154)
T 2z51_A 27 VALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPE----IVAVE--ALPDEE--TGLELNEENIEKVLE-EI 97 (154)
T ss_dssp EEEEEEETTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTT----CCEEE--ECCSSC--CSCCSSHHHHHHHHH-HH
T ss_pred EEEEEEECCEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCC----ceEEE--EccCch--hhhHHHHHHHHHHHH-HH
Confidence 655556667676655331 12235777888888887622 11110 001111 111224689999999 59
Q ss_pred Ccchhc-CCCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeec
Q 023823 200 RPAVQD-DGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE 261 (276)
Q Consensus 200 rP~l~~-dGGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~ 261 (276)
||+|++ |||||||+++| +|+|+|||+|+|+|| +||+++||++|++++|+|++|+++
T Consensus 98 RP~L~~~dGGdvelv~v~--~~~v~v~l~Gac~~~----~Tlk~~Ie~~l~e~vP~i~~V~~~ 154 (154)
T 2z51_A 98 RPYLIGTADGSLDLVEIE--DPIVKIRITGPAAGV----MTVRVAVTQKLREKIPSIAAVQLI 154 (154)
T ss_dssp GGGCCGGGCCEEEEEEEE--TTEEEEEEESGGGGC----HHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred HHHhhhcCCCCeEEEEEE--CCEEEEEEecCCccc----HhHHHHHHHHHHHHCCCccEEEeC
Confidence 999998 99999999998 799999999999998 799999999999999999999863
No 10
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=97.67 E-value=0.00021 Score=55.80 Aligned_cols=72 Identities=28% Similarity=0.317 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCCcchhcCC---CcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeecC
Q 023823 187 TVAMIKELLETRIRPAVQDDG---GDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQEL 262 (276)
Q Consensus 187 l~~~I~~vL~~~IrP~l~~dG---GdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~~ 262 (276)
..+.|.++|.+-+.|.+..+- |-|.-+.++ +|.|+|.|...+.+||... .+++.|+++|+ .+|+|..|+...
T Consensus 7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~--~~~V~v~l~lt~~~cp~~~-~l~~~i~~al~-~l~gv~~V~V~l 81 (103)
T 3cq1_A 7 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVE--PPRAYVRMTLTTPGCPLHD-SLGEAVRQALS-RLPGVEEVEVEV 81 (103)
T ss_dssp HHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEE--TTEEEEEECCSSSSCCSSC-HHHHHHHHHHH-TSTTCCEEEEEE
T ss_pred HHHHHHHHHhCCCCCCCCcCchhcCceEEEEEE--CCEEEEEEEECCCCCcHHH-HHHHHHHHHHH-hCCCceeEEEEE
Confidence 567899999988999999887 778877777 5799999999999999965 68999999997 589998887654
No 11
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=96.89 E-value=0.0024 Score=50.25 Aligned_cols=76 Identities=24% Similarity=0.320 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHhcCCcchhcC---CCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeec
Q 023823 185 SETVAMIKELLETRIRPAVQDD---GGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE 261 (276)
Q Consensus 185 ~el~~~I~~vL~~~IrP~l~~d---GGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~ 261 (276)
+...++|.++|.+-+-|.+..+ -|-|.=+.+++ +|.|.|.|.-.+.+||... .++..|+.+|+..+|+|.+|...
T Consensus 7 ~~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v~~-~~~V~V~ltlt~p~cp~~~-~i~~~i~~al~~~l~Gv~~V~V~ 84 (108)
T 3lno_A 7 EAFENKLYANLEAVIDPELGVDIVNLGLVYDVTADE-NNNAVITMTMTSIGCPMAG-QIVSDVKKVLSTNVPEVNEIEVN 84 (108)
T ss_dssp HHHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECT-TCCEEEEECCSCTTCTTHH-HHHHHHHHHHHHHCTTCCCEEEE
T ss_pred hhhHHHHHHHHcCCCCCCCCCCHHHcCCceEEEECC-CCeEEEEEEECCCCCcHHH-HHHHHHHHHHHHhCCCCceEEEE
Confidence 3467889999998889988655 46777777762 4899999999999999876 78999999997779999988765
Q ss_pred C
Q 023823 262 L 262 (276)
Q Consensus 262 ~ 262 (276)
+
T Consensus 85 l 85 (108)
T 3lno_A 85 V 85 (108)
T ss_dssp E
T ss_pred E
Confidence 4
No 12
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=96.72 E-value=0.0056 Score=47.50 Aligned_cols=72 Identities=24% Similarity=0.223 Sum_probs=57.4
Q ss_pred HHHHHHHHHhcCCcchhcCC---CcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeecC
Q 023823 188 VAMIKELLETRIRPAVQDDG---GDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQEL 262 (276)
Q Consensus 188 ~~~I~~vL~~~IrP~l~~dG---GdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~~ 262 (276)
.+.|.++|.+-+-|.+..+- |-|.=+.+++ +|.|+|.|.-.+.+||... .+++.|+++|+ .+|+|.+|+..+
T Consensus 8 ~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~-~~~V~v~l~lt~~~cp~~~-~l~~~i~~al~-~l~gv~~v~V~l 82 (103)
T 1uwd_A 8 KEDVLNALKNVIDFELGLDVVSLGLVYDIQIDD-QNNVKVLMTMTTPMCPLAG-MILSDAEEAIK-KIEGVNNVEVEL 82 (103)
T ss_dssp HHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECT-TCEEEEEECCSSSCCSSHH-HHHHHHHHHHH-TSSSCCEEEEEE
T ss_pred HHHHHHHHcCCCCCCCCcChhhcCCeeEEEEcC-CCEEEEEEEECCCCCcHHH-HHHHHHHHHHH-hCCCcceEEEEE
Confidence 46788999987779988775 6666566652 3799999999999999855 78999999997 589998887654
No 13
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=83.99 E-value=1.5 Score=35.93 Aligned_cols=53 Identities=15% Similarity=0.245 Sum_probs=40.2
Q ss_pred EEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeecCC
Q 023823 210 IEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELD 263 (276)
Q Consensus 210 Ielv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~~~ 263 (276)
|.+..++.+++.|.|.|+=.=.|||+++. +-..|+.+|.+.+|...+|+....
T Consensus 40 I~v~~~~~~~~~V~V~~TPT~p~Cp~a~~-I~l~Ir~kL~~~lp~~~kV~v~I~ 92 (130)
T 3ux2_A 40 VEVQEINEEEYLVIIRFTPTVPHCSLATL-IGLCLRVKLQRCLPFKHKLEIYIS 92 (130)
T ss_dssp EEEEEEETTEEEEEECCCCCCCSSCHHHH-HHHHHHHHHHHHCSSCCCCCCCCC
T ss_pred eEeecccCCCCeEEEEEEeCCCCCCchHH-HHHHHHHHHHHhCCCceEEEEEEC
Confidence 33333444567899999999999999985 567899999999998777765443
No 14
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=51.15 E-value=8.6 Score=31.03 Aligned_cols=58 Identities=16% Similarity=0.294 Sum_probs=40.0
Q ss_pred cCCCcEEEEEEecCCCEEEEEe-ccCCC-CCcchHHHHHHHHHHHHHHhCCCcceEeecCCcc
Q 023823 205 DDGGDIEYRGFDPETGTVKLRM-QGACS-GCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAE 265 (276)
Q Consensus 205 ~dGGdIelv~~d~~~g~V~Vrl-~GaC~-gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~~~~~ 265 (276)
.+|-.+.+-++. |.+|.|-+ ...|. -||.....|.+ +++.+++.-.+|.-|-.-.|++
T Consensus 20 ~~G~~v~l~d~~--Gk~vll~F~~t~Cp~~Cp~~~~~l~~-l~~~~~~~~~~v~~v~isvDp~ 79 (170)
T 4hde_A 20 QDGKPFGTKDLK--GKVWVADFMFTNCQTVCPPMTANMAK-LQKMAKEEKLDVQFVSFSVDPD 79 (170)
T ss_dssp TTSCEEEHHHHT--TSCEEEEEECTTCSSSHHHHHHHHHH-HHHHHHHTTCCCEEEEEESCTT
T ss_pred CCCCEEeHHHhC--CCEEEEEEECCCCCCcccHHHHHHHH-HHHhhhcccccceeEeeecCcc
Confidence 456667776664 56777776 47896 59998888854 7778887666777665555543
No 15
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=42.59 E-value=27 Score=27.66 Aligned_cols=26 Identities=19% Similarity=0.448 Sum_probs=20.7
Q ss_pred CCCCCcchHHHHHHHHHHHHHHhCCCc
Q 023823 229 ACSGCPSSSVTLKSGIENMLMHYVPEV 255 (276)
Q Consensus 229 aC~gCpss~~TLk~~Ie~~L~~~vPeV 255 (276)
+|.+-|+|..|. .|+|.+|++.+|+.
T Consensus 21 SCVnaPSSkeTy-EWLqAal~RKyp~~ 46 (111)
T 1xg8_A 21 SCVNAPTSKDIY-DWLQPLLKRKYPNI 46 (111)
T ss_dssp GGSSSCCHHHHH-HHHHHHHHHHCTTS
T ss_pred hccCCCCchhHH-HHHHHHHhCcCCCC
Confidence 344447888776 89999999999983
No 16
>1um0_A Chorismate synthase; beta-alpha-beta sandwich fold, lyase; HET: FMN; 1.95A {Helicobacter pylori} SCOP: d.258.1.1 PDB: 1umf_A
Probab=39.08 E-value=16 Score=34.70 Aligned_cols=26 Identities=19% Similarity=0.486 Sum_probs=22.9
Q ss_pred CcHHHhcccCCCCeeEEEEeCCeEEE
Q 023823 112 NSPLAKSLYGVDGITRVFFGSDFITV 137 (276)
Q Consensus 112 ~sPLA~~LF~i~gV~sVfi~~dFITV 137 (276)
.+-||.+||.|+.||.|.||..|=..
T Consensus 230 da~LA~A~msI~AvKGvEiG~GF~~a 255 (365)
T 1um0_A 230 DAKIAEAMMGLNGVKAVEIGKGVESS 255 (365)
T ss_dssp HHHHHHHHHTSTTEEEEEETTGGGGG
T ss_pred hHHHHHHhcCccceeeEEeccchhhh
Confidence 57899999999999999999988533
No 17
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=37.88 E-value=42 Score=22.57 Aligned_cols=33 Identities=21% Similarity=0.500 Sum_probs=21.9
Q ss_pred EEEEEecc-CCCCCcchHHHHHHHHHHHHHHhCCCcceEeecC
Q 023823 221 TVKLRMQG-ACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQEL 262 (276)
Q Consensus 221 ~V~Vrl~G-aC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~~ 262 (276)
.+.++..| .|.+|. ..|++.|+. |.|..|...+
T Consensus 6 ~~~~~v~gm~C~~C~-------~~ie~~l~~--~gv~~~~v~~ 39 (73)
T 3fry_A 6 KIVLELSGLSCHHCV-------ARVKKALEE--AGAKVEKVDL 39 (73)
T ss_dssp EEEEEEESSBCGGGH-------HHHHHHHHH--TTCEEEEECS
T ss_pred EEEEEECCCCCHHHH-------HHHHHHhcc--CCcEEEEEEc
Confidence 35566666 577763 357888887 8887766543
No 18
>4ecd_A Chorismate synthase; 4-layer sandwich, lyase; 2.50A {Bifidobacterium longum subsp}
Probab=26.20 E-value=27 Score=33.50 Aligned_cols=32 Identities=19% Similarity=0.525 Sum_probs=23.7
Q ss_pred cCcHHHhcccCCCCeeEEEEeCCeEEEEecCC
Q 023823 111 MNSPLAKSLYGVDGITRVFFGSDFITVTKSED 142 (276)
Q Consensus 111 ~~sPLA~~LF~i~gV~sVfi~~dFITVtK~~~ 142 (276)
..+-||.+||.|+.||.|.||..|=.......
T Consensus 247 Lda~LA~A~mSI~AvKGvEiG~GF~~a~~~GS 278 (398)
T 4ecd_A 247 LDAALASAIMGIQAFKGVEIGDGFLAASRPGS 278 (398)
T ss_dssp HHHHHHHHHHTSTTEEEEEETTTTTC------
T ss_pred hhHHHHHHhcCcCceeeEEecchHhhhhcccc
Confidence 35789999999999999999999986666543
No 19
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate, anti-infective, lyase; HET: FMN EPS; 2.00A {Streptococcus pneumoniae} SCOP: d.258.1.1
Probab=23.10 E-value=25 Score=33.58 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=23.7
Q ss_pred cCcHHHhcccCCCCeeEEEEeCCeEEEE
Q 023823 111 MNSPLAKSLYGVDGITRVFFGSDFITVT 138 (276)
Q Consensus 111 ~~sPLA~~LF~i~gV~sVfi~~dFITVt 138 (276)
..+-||.+||.|+.||.|.||..|=...
T Consensus 239 Lda~LA~AlmSI~AvKGvEiG~GF~~a~ 266 (388)
T 1qxo_A 239 LDARLAQAVVSINAFKGVEFGLGFEAGY 266 (388)
T ss_dssp HHHHHHHHHHTSTTEEEEEETTGGGGGG
T ss_pred chHHHHHHhcCcCceeEEEECcchhhhh
Confidence 3578999999999999999999885433
No 20
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta tetrameric PROT protein structure initiative; 2.80A {Campylobacter jejuni} SCOP: d.258.1.1
Probab=22.68 E-value=32 Score=32.65 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=23.5
Q ss_pred CcHHHhcccCCCCeeEEEEeCCeEEEE
Q 023823 112 NSPLAKSLYGVDGITRVFFGSDFITVT 138 (276)
Q Consensus 112 ~sPLA~~LF~i~gV~sVfi~~dFITVt 138 (276)
.+-||.+||.|+.||.|.||..|=...
T Consensus 227 da~LA~AlmSI~AvKGvEiG~GF~~a~ 253 (370)
T 1sq1_A 227 DSKLAHALMGINAVKAVEIGEGINASK 253 (370)
T ss_dssp HHHHHHHHHTSTTEEEEEETTGGGGGG
T ss_pred hHHHHHHhcCccceeEEEeccchhhhh
Confidence 578999999999999999999986443
No 21
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=22.11 E-value=61 Score=25.66 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=29.9
Q ss_pred CCCcEEEEEEecCCCEEEEEec-cC-CCCCcchHHHHHHHHHHHHHHhCCCcceEeecCCc
Q 023823 206 DGGDIEYRGFDPETGTVKLRMQ-GA-CSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDA 264 (276)
Q Consensus 206 dGGdIelv~~d~~~g~V~Vrl~-Ga-C~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~~~~ 264 (276)
+|..+.+-++. +..+.|-+- +. |..|+.....|....++ +.+.-|-...|.
T Consensus 33 ~G~~v~l~~~~--gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~------~~v~vv~Is~D~ 85 (175)
T 1xvq_A 33 DLGVISSDQFR--GKSVLLNIFPSVDTPVCATSVRTFDERAAA------SGATVLCVSKDL 85 (175)
T ss_dssp TSCEEEGGGGT--TSCEEEEECSCCCSSCCCHHHHHHHHHHHH------TTCEEEEEESSC
T ss_pred CCCEEeHHHcC--CCEEEEEEEeCCCCchHHHHHHHHHHHHhh------cCCEEEEEECCC
Confidence 46666665553 445666664 56 99998777666554333 566544444443
No 22
>1q1l_A Chorismate synthase; beta alpha beta sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.05A {Aquifex aeolicus} SCOP: d.258.1.1
Probab=21.33 E-value=35 Score=32.70 Aligned_cols=33 Identities=15% Similarity=0.316 Sum_probs=26.0
Q ss_pred ecCChhhhcCcHHHhcccCCCCeeEEEEeCCeEEEE
Q 023823 103 DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVT 138 (276)
Q Consensus 103 ~F~~~~~A~~sPLA~~LF~i~gV~sVfi~~dFITVt 138 (276)
.|...- .+-||.+||.|+.||.|.||..|=...
T Consensus 247 ~fdkrL---da~LA~AlmSI~AvKGvEiG~GF~~a~ 279 (401)
T 1q1l_A 247 QWDRRI---DGRIAQAMMSIQAIKGVEIGLGFEAAR 279 (401)
T ss_dssp SGGGCH---HHHHHHHHHTSTTEEEEEETTGGGGGG
T ss_pred cccccc---hHHHHHHhcCcCceeEEEECcchhhhh
Confidence 565533 468999999999999999999885433
No 23
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=20.54 E-value=2.7e+02 Score=20.67 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhCCCcceEeecCCc
Q 023823 239 TLKSGIENMLMHYVPEVKSVEQELDA 264 (276)
Q Consensus 239 TLk~~Ie~~L~~~vPeV~~V~~~~~~ 264 (276)
.+...|+..|++.+|+|..|....++
T Consensus 59 ~i~~~ie~~L~~~~~~i~~vtIhvEp 84 (107)
T 2zzt_A 59 ELTVKIRKEMLKRRDDIEDVTIHVEP 84 (107)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCcEEEEEEec
Confidence 57788999999999988766654433
Done!