Query 023823
Match_columns 276
No_of_seqs 206 out of 1252
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 13:23:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023823.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023823hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1veha_ d.52.8.1 (A:) HIRA-int 99.9 7.7E-28 5.6E-32 187.3 7.2 83 181-265 8-90 (92)
2 d2ffma1 d.267.1.1 (A:1-83) Hyp 99.9 6.9E-27 5E-31 178.5 8.6 81 75-156 2-82 (83)
3 d1xhja_ d.52.8.1 (A:) Nitrogen 99.9 4.6E-26 3.3E-30 175.8 7.0 79 183-264 4-83 (88)
4 d1th5a1 d.52.8.1 (A:154-226) N 99.8 1.1E-21 7.8E-26 146.3 5.2 67 188-261 5-72 (73)
5 d2cu6a1 d.52.8.2 (A:6-96) Hypo 96.4 0.005 3.6E-07 45.4 7.5 74 187-264 2-78 (91)
6 d1uwda_ d.52.8.2 (A:) Hypothet 95.7 0.02 1.5E-06 43.0 7.9 73 188-263 7-82 (102)
7 d1q8la_ d.58.17.1 (A:) Menkes 59.0 7.5 0.00054 26.8 5.1 34 220-261 9-43 (84)
8 d1osda_ d.58.17.1 (A:) Mercuri 54.0 6.5 0.00048 26.1 3.9 33 221-261 4-37 (72)
9 d1xzoa1 c.47.1.10 (A:3-174) Th 51.7 6.1 0.00044 30.1 3.8 59 204-265 18-78 (172)
10 d1p6ta1 d.58.17.1 (A:1-72) Pot 47.8 4.9 0.00036 26.7 2.4 35 219-261 5-40 (72)
11 d1xg8a_ c.47.1.17 (A:) Hypothe 40.4 9 0.00066 28.5 2.9 26 230-256 22-47 (111)
12 d1gkza2 d.122.1.4 (A:186-378) 36.5 8.1 0.00059 29.8 2.3 26 202-227 161-186 (193)
13 d1q1la_ d.258.1.1 (A:) Chorism 35.5 6.2 0.00045 35.5 1.6 28 112-139 249-276 (397)
14 d1xn7a_ a.4.5.62 (A:) Hypothet 33.2 6.1 0.00045 27.7 0.9 24 208-236 44-67 (78)
15 d1sq1a_ d.258.1.1 (A:) Chorism 33.0 8.2 0.00059 34.3 1.9 36 100-139 219-254 (360)
16 d1um0a_ d.258.1.1 (A:) Chorism 31.4 8 0.00058 34.4 1.6 27 112-138 230-256 (365)
17 d1kvja_ d.58.17.1 (A:) Menkes 29.2 25 0.0018 23.4 3.7 34 220-261 8-42 (79)
18 d1qxoa_ d.258.1.1 (A:) Chorism 29.1 9.2 0.00067 34.3 1.6 28 112-139 240-267 (388)
19 d1i58a_ d.122.1.3 (A:) Histidi 28.3 14 0.001 27.0 2.3 24 203-226 163-186 (189)
20 d1r53a_ d.258.1.1 (A:) Chorism 27.1 7.9 0.00058 34.5 0.7 28 112-139 239-266 (371)
21 d2c42a2 c.36.1.12 (A:786-1232) 23.1 10 0.00075 34.6 0.7 24 224-249 21-44 (447)
22 d1p6ta2 d.58.17.1 (A:73-151) P 22.1 32 0.0023 22.8 3.1 32 221-260 3-35 (79)
23 d1jm6a2 d.122.1.4 (A:1177-1366 21.4 21 0.0016 27.6 2.3 26 203-228 153-178 (190)
24 d1o73a_ c.47.1.10 (A:) Trypare 20.2 14 0.001 26.9 0.9 36 203-240 14-50 (144)
No 1
>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.94 E-value=7.7e-28 Score=187.25 Aligned_cols=83 Identities=63% Similarity=1.088 Sum_probs=79.1
Q ss_pred CCCchHHHHHHHHHHHhcCCcchhcCCCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEee
Q 023823 181 NEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQ 260 (276)
Q Consensus 181 ~~~~~el~~~I~~vL~~~IrP~l~~dGGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~ 260 (276)
.++++++.++|+++|+++|||+|++|||||+|++|+ +|+|+|+|+|+|+|||+|++||+++||++|++++|||+.|++
T Consensus 8 ~~~d~e~~~~I~~vL~~~IrP~l~~dGGdv~lv~v~--~g~V~v~l~GaC~gCp~s~~Tlk~~Ie~~L~~~vpev~~V~~ 85 (92)
T d1veha_ 8 SEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFE--DGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQ 85 (92)
T ss_dssp CSSCCHHHHHHHHHHHHTTHHHHHHHSCCCCEEEEE--TTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEE
T ss_pred CCccHHHHHHHHHHHHHhcChHHHHcCCceEEEEee--CCeEEEEEccCCCCChhHHHHHHHHHHHHHHHHCCCcceEEE
Confidence 457889999999999999999999999999999998 799999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 023823 261 ELDAE 265 (276)
Q Consensus 261 ~~~~~ 265 (276)
+.|+.
T Consensus 86 v~~~~ 90 (92)
T d1veha_ 86 VSGPS 90 (92)
T ss_dssp CSCSC
T ss_pred cCCCC
Confidence 98764
No 2
>d2ffma1 d.267.1.1 (A:1-83) Hypothetical protein SAV1430 {Staphylococcus aureus [TaxId: 1280]}
Probab=99.93 E-value=6.9e-27 Score=178.52 Aligned_cols=81 Identities=21% Similarity=0.431 Sum_probs=75.7
Q ss_pred EEEEeeCCCCCCceeEeCCcccCCCcceecCChhhhcCcHHHhcccCCCCeeEEEEeCCeEEEEecCCCChhhhHHHHHH
Q 023823 75 MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFA 154 (276)
Q Consensus 75 m~I~~E~TPNPn~LKF~p~~~l~~~gs~~F~~~~~A~~sPLA~~LF~i~gV~sVfi~~dFITVtK~~~~dW~~Lkp~I~~ 154 (276)
++|++|+|||||+|||++++.+..+|+.+|++.++ ..+|||++||+++||++||+++|||||+|.++++|++|+++|++
T Consensus 2 ~~I~~e~TPNPn~lKFi~~~~l~~~~~~~~~~~~~-~~~pla~~Lf~i~gV~~Vf~~~dFITVtK~~~~~W~~l~~~I~~ 80 (83)
T d2ffma1 2 KIISISETPNHNTMKITLSESREGMTSDTYTKVDD-SQPAFINDILKVEGVKSIFHVMDFISVDKENDANWETVLPKVEA 80 (83)
T ss_dssp CEEEEEECSSSSEEEEEESSCCSSSCCEEECSCCT-TSCHHHHHHHTSTTEEEEEEETTEEEEEECTTCCHHHHHHHHHH
T ss_pred cEEEcccCCCcccEEEecCccccCCCceeeCchhh-hcCHHHHHHHcCCCceEEEEeCCEEEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999999999989999998775 47999999999999999999999999999999999999999987
Q ss_pred HH
Q 023823 155 AI 156 (276)
Q Consensus 155 ~I 156 (276)
++
T Consensus 81 ~~ 82 (83)
T d2ffma1 81 VF 82 (83)
T ss_dssp TT
T ss_pred Hh
Confidence 64
No 3
>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]}
Probab=99.92 E-value=4.6e-26 Score=175.83 Aligned_cols=79 Identities=43% Similarity=0.751 Sum_probs=73.7
Q ss_pred CchHHHHHHHHHHHhcCCcchhcCCCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeec-
Q 023823 183 DDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE- 261 (276)
Q Consensus 183 ~~~el~~~I~~vL~~~IrP~l~~dGGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~- 261 (276)
++.++.++|+++|+ +|||+|++|||||+|++++ +|+|+|||+|||+|||+|.+||+++||++|++++|+|+.|+.+
T Consensus 4 ~~~~l~~~I~~vLe-~IRP~l~~dGGdvelv~v~--~g~V~v~l~GaC~gC~~s~~Tlk~~Ie~~L~~~vpev~~V~~V~ 80 (88)
T d1xhja_ 4 ENPTMFDQVAEVIE-RLRPFLLRDGGDCTLVDVE--DGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQVF 80 (88)
T ss_dssp CCSCHHHHHHHHHH-HHHHHHHHHSCEEEEEECC--SSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEEE
T ss_pred CcHHHHHHHHHHHH-HhhHHHHhCCCcEEEEecc--CCEEEEEecCCCCCCccHHHHHHHHHHHHHHHHCCCCceEEEec
Confidence 46779999999997 6999999999999999997 7999999999999999999999999999999999999999986
Q ss_pred CCc
Q 023823 262 LDA 264 (276)
Q Consensus 262 ~~~ 264 (276)
++.
T Consensus 81 ~~~ 83 (88)
T d1xhja_ 81 LEH 83 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 444
No 4
>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]}
Probab=99.83 E-value=1.1e-21 Score=146.30 Aligned_cols=67 Identities=21% Similarity=0.416 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCCcchh-cCCCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeec
Q 023823 188 VAMIKELLETRIRPAVQ-DDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE 261 (276)
Q Consensus 188 ~~~I~~vL~~~IrP~l~-~dGGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~ 261 (276)
.++|+++|+ +|||+|+ +|||||+|+++| +|+|+|||+|+|+||+ ||+++||++|++++|||+.|+.+
T Consensus 5 ee~V~~vL~-eirP~l~a~dGGdvelv~i~--~~~v~v~l~GaC~gC~----Tl~~gIe~~L~~~iPei~~V~~v 72 (73)
T d1th5a1 5 EENVEKVLN-EIRPYLAGTGGGGLQFLMIK--GPIVKVRLTGPAAVVR----TVRIAVSKKLREKIPSIQIVQLL 72 (73)
T ss_dssp HHHHHHHHT-TTHHHHTTTTCCCCCCCEEE--TTEEEECCCSSSSSSS----SHHHHHHHHHHHHCTTCSEEEEC
T ss_pred HHHHHHHHH-HhcccccccCCceEEEEEec--CCEEEEEecCCCcccc----hHHHHHHHHHHHHCCCccEEEec
Confidence 578999998 6999997 699999999998 7999999999999994 99999999999999999999875
No 5
>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}
Probab=96.41 E-value=0.005 Score=45.40 Aligned_cols=74 Identities=27% Similarity=0.282 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCCcchhcC---CCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeecCC
Q 023823 187 TVAMIKELLETRIRPAVQDD---GGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELD 263 (276)
Q Consensus 187 l~~~I~~vL~~~IrP~l~~d---GGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~~~ 263 (276)
++++|.++|..-+-|.+..+ =|=|.-+.++ +|.|.|.|.-.+.+||.... +.+.|+++|+ .+|+|.+|+..+.
T Consensus 2 le~~v~eaL~~V~DPe~~~dIv~LGlV~~i~i~--~~~v~v~l~lt~~~cp~~~~-i~~~i~~al~-~l~gv~~V~V~~~ 77 (91)
T d2cu6a1 2 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVE--PPRAYVRMTLTTPGCPLHDS-LGEAVRQALS-RLPGVEEVEVEVT 77 (91)
T ss_dssp HHHHHHHHHTTCEETTTTEETTTTTCEEEEEEE--TTEEEEEECCSSSSCCSSCH-HHHHHHHHHH-TSTTCCEEEEEEC
T ss_pred hHHHHHHHHhcCCCCCCCcChhhccceeEEEEe--ccccEEEEEcCCCCCcHHHH-HHHHHHHHHH-cCCCCceEEEEEE
Confidence 57889999998899988665 4667777776 68999999999999998874 8889999997 4899999887654
Q ss_pred c
Q 023823 264 A 264 (276)
Q Consensus 264 ~ 264 (276)
.
T Consensus 78 ~ 78 (91)
T d2cu6a1 78 F 78 (91)
T ss_dssp C
T ss_pred e
Confidence 4
No 6
>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}
Probab=95.66 E-value=0.02 Score=42.99 Aligned_cols=73 Identities=23% Similarity=0.215 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCCcchhcC---CCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeecCC
Q 023823 188 VAMIKELLETRIRPAVQDD---GGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELD 263 (276)
Q Consensus 188 ~~~I~~vL~~~IrP~l~~d---GGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~~~ 263 (276)
.+.|.++|.+.+-|.+..+ =|=|.-+.+++ +|.|.|.|.=.+.+||... .+.+.|++.|+ .+|+|.+|.....
T Consensus 7 ~~~V~~aL~~V~DPe~~~dIV~LGlV~~i~I~~-~g~V~v~~~lt~~~Cp~~~-~i~~~i~~al~-~~~gV~~v~V~i~ 82 (102)
T d1uwda_ 7 KEDVLNALKNVIDFELGLDVVSLGLVYDIQIDD-QNNVKVLMTMTTPMCPLAG-MILSDAEEAIK-KIEGVNNVEVELT 82 (102)
T ss_dssp HHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECT-TCEEEEEECCSSSCCSSHH-HHHHHHHHHHH-TSSSCCEEEEEEC
T ss_pred HHHHHHHHhCCCCCCCCcceeeccceeeEEecc-ccceEEEEecCCCCCchHH-HHHHHHHHHHH-cCCCCceEEEEEE
Confidence 4678888888888988554 24455555662 4799999999999999877 58889999999 5899998887654
No 7
>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.01 E-value=7.5 Score=26.77 Aligned_cols=34 Identities=24% Similarity=0.560 Sum_probs=23.7
Q ss_pred CEEEEEecc-CCCCCcchHHHHHHHHHHHHHHhCCCcceEeec
Q 023823 220 GTVKLRMQG-ACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE 261 (276)
Q Consensus 220 g~V~Vrl~G-aC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~ 261 (276)
.++.++..| .|.+|.. .||+.|+. +|.|..|..-
T Consensus 9 ~~v~l~V~GMtC~~C~~-------~Ie~~l~~-~~GV~~v~vn 43 (84)
T d1q8la_ 9 VVLKMKVEGMTCHSCTS-------TIEGKIGK-LQGVQRIKVS 43 (84)
T ss_dssp EEEEEEECCTTTCSSCH-------HHHHHHHT-CTTEEEEEEC
T ss_pred EEEEEEECCeEcHHHHH-------HHHHHHhc-CCCceEEEEE
Confidence 356777778 8999874 35666654 7888877653
No 8
>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]}
Probab=54.03 E-value=6.5 Score=26.14 Aligned_cols=33 Identities=33% Similarity=0.661 Sum_probs=23.9
Q ss_pred EEEEEecc-CCCCCcchHHHHHHHHHHHHHHhCCCcceEeec
Q 023823 221 TVKLRMQG-ACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE 261 (276)
Q Consensus 221 ~V~Vrl~G-aC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~ 261 (276)
++.+...| .|++|.+ .||+.|+. +|.|..|...
T Consensus 4 t~~l~V~Gm~C~~C~~-------~Ie~~l~~-~~gV~~v~v~ 37 (72)
T d1osda_ 4 TVTLSVPGMTCSACPI-------TVKKAISK-VEGVSKVDVT 37 (72)
T ss_dssp EEEEECTTCCSTTHHH-------HHHHHHHT-STTEEEEEEE
T ss_pred EEEEEECCcccHHHHH-------HHHHHHHc-CCCcEEEEEE
Confidence 67888888 7888753 46667765 8888877643
No 9
>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}
Probab=51.69 E-value=6.1 Score=30.06 Aligned_cols=59 Identities=15% Similarity=0.321 Sum_probs=41.3
Q ss_pred hcCCCcEEEEEEecCCCEEEEEe-ccCCC-CCcchHHHHHHHHHHHHHHhCCCcceEeecCCcc
Q 023823 204 QDDGGDIEYRGFDPETGTVKLRM-QGACS-GCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAE 265 (276)
Q Consensus 204 ~~dGGdIelv~~d~~~g~V~Vrl-~GaC~-gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~~~~~ 265 (276)
..+|-.|.+-++. |.+|.|-+ ...|. .||.....++. +.+.+...-.+|.-|-.-.|++
T Consensus 18 d~~G~~vsl~d~~--Gk~vvl~F~~t~Cp~~C~~~~~~l~~-~~~~~~~~~~~v~~v~isiDp~ 78 (172)
T d1xzoa1 18 NQDGKNVSLESLK--GEVWLADFIFTNCETICPPMTAHMTD-LQKKLKAENIDVRIISFSVDPE 78 (172)
T ss_dssp CTTSCEEETGGGT--TCCEEEEEECSCCSSCCCSHHHHHHH-HHHHHHHTTCCCEEEEEESCTT
T ss_pred cCCCCEEcHHHhC--CCEEEEEEecccccccccccchhhhh-hhhhhccccccccccccccccc
Confidence 3456667777665 56677776 46796 69999998875 7777877666777666555543
No 10
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}
Probab=47.84 E-value=4.9 Score=26.70 Aligned_cols=35 Identities=23% Similarity=0.579 Sum_probs=24.9
Q ss_pred CCEEEEEecc-CCCCCcchHHHHHHHHHHHHHHhCCCcceEeec
Q 023823 219 TGTVKLRMQG-ACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE 261 (276)
Q Consensus 219 ~g~V~Vrl~G-aC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~ 261 (276)
...+.+...| .|.+|. ..||+.|+. +|.|.+|...
T Consensus 5 ~~~~~l~V~Gm~C~~C~-------~~Ie~~l~~-~~gV~~v~v~ 40 (72)
T d1p6ta1 5 QKEIAMQVSGMTCAACA-------ARIEKGLKR-MPGVTDANVN 40 (72)
T ss_dssp CEEEEEEEESCCSSHHH-------HHHHHHHTT-SSSEEEEEEE
T ss_pred ceEEEEEECCeecHHHH-------HHHHHHHHc-CCCcEEEEEE
Confidence 3478888888 677664 347777876 5899877653
No 11
>d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798 {Staphylococcus aureus [TaxId: 1280]}
Probab=40.37 E-value=9 Score=28.52 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=20.6
Q ss_pred CCCCcchHHHHHHHHHHHHHHhCCCcc
Q 023823 230 CSGCPSSSVTLKSGIENMLMHYVPEVK 256 (276)
Q Consensus 230 C~gCpss~~TLk~~Ie~~L~~~vPeV~ 256 (276)
|.+-|+|..|. .|++.+|++.+|+..
T Consensus 22 CV~aPSSkeTy-EWLqaal~RKyp~~~ 47 (111)
T d1xg8a_ 22 CVNAPTSKDIY-DWLQPLLKRKYPNIS 47 (111)
T ss_dssp GSSSCCHHHHH-HHHHHHHHHHCTTSC
T ss_pred hcCCCCchhHH-HHHHHHHhCcCCCCc
Confidence 44447788776 899999999999843
No 12
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=36.50 E-value=8.1 Score=29.83 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=19.1
Q ss_pred chhcCCCcEEEEEEecCCCEEEEEec
Q 023823 202 AVQDDGGDIEYRGFDPETGTVKLRMQ 227 (276)
Q Consensus 202 ~l~~dGGdIelv~~d~~~g~V~Vrl~ 227 (276)
+++.|||+|++.+...++-+++|+|.
T Consensus 161 ive~~gG~i~v~S~~g~Gt~f~l~L~ 186 (193)
T d1gkza2 161 YAEYLGGSLQLQSLQGIGTDVYLRLR 186 (193)
T ss_dssp HHHHTTCEEEEEEETTTEEEEEEEEE
T ss_pred HHHHCCCEEEEEecCCCceEEEEEEC
Confidence 34679999999987644446788873
No 13
>d1q1la_ d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex aeolicus [TaxId: 63363]}
Probab=35.47 E-value=6.2 Score=35.53 Aligned_cols=28 Identities=18% Similarity=0.391 Sum_probs=23.5
Q ss_pred CcHHHhcccCCCCeeEEEEeCCeEEEEe
Q 023823 112 NSPLAKSLYGVDGITRVFFGSDFITVTK 139 (276)
Q Consensus 112 ~sPLA~~LF~i~gV~sVfi~~dFITVtK 139 (276)
.+-||++||.|+.||.|-||..|=...+
T Consensus 249 da~LA~AlmSIpAvKgvEfG~Gf~~a~~ 276 (397)
T d1q1la_ 249 DGRIAQAMMSIQAIKGVEIGLGFEAARR 276 (397)
T ss_dssp HHHHHHHHHTSTTEEEEEETTGGGGGGS
T ss_pred hHHHHHHHhcchhhhhhhcccchhHHhh
Confidence 4689999999999999999987754444
No 14
>d1xn7a_ a.4.5.62 (A:) Hypothetical protein YhgG {Escherichia coli [TaxId: 562]}
Probab=33.23 E-value=6.1 Score=27.70 Aligned_cols=24 Identities=29% Similarity=0.728 Sum_probs=17.1
Q ss_pred CcEEEEEEecCCCEEEEEeccCCCCCcch
Q 023823 208 GDIEYRGFDPETGTVKLRMQGACSGCPSS 236 (276)
Q Consensus 208 GdIelv~~d~~~g~V~Vrl~GaC~gCpss 236 (276)
|.||-++-|. +| =|+|+|.+||-.
T Consensus 44 GK~erie~d~-~g----CLsGsCKsCPEg 67 (78)
T d1xn7a_ 44 GKAVRIQEEP-DG----CLSGSCKSCPEG 67 (78)
T ss_dssp TSEEEECCCC-CC----CCCSSCCCCCCC
T ss_pred hcceeccccc-cc----cccCCCCCCCCc
Confidence 7888775553 33 368999999964
No 15
>d1sq1a_ d.258.1.1 (A:) Chorismate synthase, AroC {Campylobacter jejuni [TaxId: 197]}
Probab=33.02 E-value=8.2 Score=34.30 Aligned_cols=36 Identities=22% Similarity=0.422 Sum_probs=27.6
Q ss_pred cceecCChhhhcCcHHHhcccCCCCeeEEEEeCCeEEEEe
Q 023823 100 GSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTK 139 (276)
Q Consensus 100 gs~~F~~~~~A~~sPLA~~LF~i~gV~sVfi~~dFITVtK 139 (276)
|+.-|.. ..+.||+++|.|+.||.|.||..|=...+
T Consensus 219 G~p~fdk----Lda~LA~A~mSIpAvKGVE~G~Gf~~a~~ 254 (360)
T d1sq1a_ 219 GEVLYDK----LDSKLAHALMGINAVKAVEIGEGINASKM 254 (360)
T ss_dssp SBTTTBC----HHHHHHHHHHTSTTEEEEEETTGGGGGGS
T ss_pred Cceeccc----cchHHHHHHhccccceeeeeccchhhhhh
Confidence 3444544 35789999999999999999998864433
No 16
>d1um0a_ d.258.1.1 (A:) Chorismate synthase, AroC {Helicobacter pylori [TaxId: 210]}
Probab=31.41 E-value=8 Score=34.41 Aligned_cols=27 Identities=19% Similarity=0.452 Sum_probs=23.4
Q ss_pred CcHHHhcccCCCCeeEEEEeCCeEEEE
Q 023823 112 NSPLAKSLYGVDGITRVFFGSDFITVT 138 (276)
Q Consensus 112 ~sPLA~~LF~i~gV~sVfi~~dFITVt 138 (276)
.+-||++||.|+.||.|.||..|=...
T Consensus 230 da~LA~A~mSIpAvKgVE~G~Gf~~a~ 256 (365)
T d1um0a_ 230 DAKIAEAMMGLNGVKAVEIGKGVESSL 256 (365)
T ss_dssp HHHHHHHHHTSTTEEEEEETTGGGGGG
T ss_pred hhHHHHHHhcccceeeeeeccchhhhh
Confidence 478999999999999999999886433
No 17
>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.20 E-value=25 Score=23.38 Aligned_cols=34 Identities=24% Similarity=0.487 Sum_probs=23.1
Q ss_pred CEEEEEecc-CCCCCcchHHHHHHHHHHHHHHhCCCcceEeec
Q 023823 220 GTVKLRMQG-ACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE 261 (276)
Q Consensus 220 g~V~Vrl~G-aC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~ 261 (276)
..+++...| .|++|. ..||+.|+ .+|.|..|..-
T Consensus 8 ~~~~l~V~gm~C~~C~-------~~ie~~l~-~~~gv~~v~v~ 42 (79)
T d1kvja_ 8 NSVTISVEGMTCNSCV-------WTIEQQIG-KVNGVHHIKVS 42 (79)
T ss_dssp EEEEEEEESCCSTHHH-------HHHHHHHH-TTTTCSEEEEE
T ss_pred eEEEEEECCeecHHHH-------HHHHHHHh-cCCCceEEEEE
Confidence 357788877 477664 34677777 46888877643
No 18
>d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus pneumoniae [TaxId: 1313]}
Probab=29.12 E-value=9.2 Score=34.26 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=23.6
Q ss_pred CcHHHhcccCCCCeeEEEEeCCeEEEEe
Q 023823 112 NSPLAKSLYGVDGITRVFFGSDFITVTK 139 (276)
Q Consensus 112 ~sPLA~~LF~i~gV~sVfi~~dFITVtK 139 (276)
.+-||++||.|+.||.|-||..|=...+
T Consensus 240 da~La~AlmSIpAvKgvEfG~GF~~a~~ 267 (388)
T d1qxoa_ 240 DARLAQAVVSINAFKGVEFGLGFEAGYR 267 (388)
T ss_dssp HHHHHHHHHTSTTEEEEEETTGGGGGGS
T ss_pred cHHHHHHHhcccceeeeeccccHHHHHh
Confidence 4789999999999999999988764433
No 19
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]}
Probab=28.25 E-value=14 Score=27.02 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=16.4
Q ss_pred hhcCCCcEEEEEEecCCCEEEEEe
Q 023823 203 VQDDGGDIEYRGFDPETGTVKLRM 226 (276)
Q Consensus 203 l~~dGGdIelv~~d~~~g~V~Vrl 226 (276)
++.|||.|++.+-..++=+++|+|
T Consensus 163 ve~hgG~I~v~S~~g~GT~f~i~l 186 (189)
T d1i58a_ 163 VESLNGSISIESEKDKGTKVTIRL 186 (189)
T ss_dssp HHHTTCEEEEEEETTTEEEEEEEE
T ss_pred HHHCCCEEEEEecCCCCEEEEEEE
Confidence 567999999987543333466665
No 20
>d1r53a_ d.258.1.1 (A:) Chorismate synthase, AroC {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.05 E-value=7.9 Score=34.49 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=23.9
Q ss_pred CcHHHhcccCCCCeeEEEEeCCeEEEEe
Q 023823 112 NSPLAKSLYGVDGITRVFFGSDFITVTK 139 (276)
Q Consensus 112 ~sPLA~~LF~i~gV~sVfi~~dFITVtK 139 (276)
.+-||+++|.|+.||.|-||..|=...+
T Consensus 239 da~LA~A~mSIpAVKgVEfG~GF~~a~~ 266 (371)
T d1r53a_ 239 EAMLAHAMLSIPASKGFEIGSGFQGVSV 266 (371)
T ss_dssp HHHHHHHHHTSTTBCCCEETTTTGGGGS
T ss_pred chHHHHHHhcccceeeeeecccchHhhc
Confidence 4789999999999999999999864433
No 21
>d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}
Probab=23.13 E-value=10 Score=34.55 Aligned_cols=24 Identities=29% Similarity=0.726 Sum_probs=15.6
Q ss_pred EEeccCCCCCcchHHHHHHHHHHHHH
Q 023823 224 LRMQGACSGCPSSSVTLKSGIENMLM 249 (276)
Q Consensus 224 Vrl~GaC~gCpss~~TLk~~Ie~~L~ 249 (276)
+.++|||.||+-... ++ .+.+++-
T Consensus 21 ~ef~gAC~GCGet~~-~k-ll~ql~g 44 (447)
T d2c42a2 21 MEFSGACSGCGETPY-VR-VITQLFG 44 (447)
T ss_dssp BCSCSCCTTCSSHHH-HH-HHHHHHG
T ss_pred hhcCCCCCCccHHHH-HH-HHHHHhC
Confidence 346899999998763 32 3444443
No 22
>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}
Probab=22.13 E-value=32 Score=22.83 Aligned_cols=32 Identities=22% Similarity=0.544 Sum_probs=20.3
Q ss_pred EEEEEecc-CCCCCcchHHHHHHHHHHHHHHhCCCcceEee
Q 023823 221 TVKLRMQG-ACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQ 260 (276)
Q Consensus 221 ~V~Vrl~G-aC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~ 260 (276)
.+.+...| .|.+|.. .||+.|+. +|.|..|..
T Consensus 3 k~~~~V~Gm~C~~C~~-------~Ie~~l~~-~~gV~~v~v 35 (79)
T d1p6ta2 3 KAEFDIEGMTCAACAN-------RIEKRLNK-IEGVANAPV 35 (79)
T ss_dssp EEEEEESSCCSSSHHH-------HHHHHHTT-SSSEEECCE
T ss_pred EEEEEECCcccHHHHH-------HHHHHHhc-CCCcEEEEE
Confidence 35667777 7777743 46666654 678876554
No 23
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Probab=21.42 E-value=21 Score=27.60 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=19.0
Q ss_pred hhcCCCcEEEEEEecCCCEEEEEecc
Q 023823 203 VQDDGGDIEYRGFDPETGTVKLRMQG 228 (276)
Q Consensus 203 l~~dGGdIelv~~d~~~g~V~Vrl~G 228 (276)
++.|||+|.+.+-..++-+++|+|..
T Consensus 153 ve~hgG~I~v~s~~g~Gt~f~i~lP~ 178 (190)
T d1jm6a2 153 AKYFQGDLQLFSMEGFGTDAVIYLKA 178 (190)
T ss_dssp HHHTTCEEEEEEETTTEEEEEEEEES
T ss_pred HHHCCCEEEEEecCCCceEEEEEEeC
Confidence 46799999999865434467888854
No 24
>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}
Probab=20.20 E-value=14 Score=26.93 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=24.1
Q ss_pred hhcCCCcEEEEEEecCCCEEEEEeccC-CCCCcchHHHH
Q 023823 203 VQDDGGDIEYRGFDPETGTVKLRMQGA-CSGCPSSSVTL 240 (276)
Q Consensus 203 l~~dGGdIelv~~d~~~g~V~Vrl~Ga-C~gCpss~~TL 240 (276)
+..+||.|.+-++. |..|.|-+-+. |..|-...-.|
T Consensus 14 ~~~~~~~v~l~~~~--GK~vvl~FwatwC~~C~~~~p~l 50 (144)
T d1o73a_ 14 LLSKSGEVSLGSLV--GKTVFLYFSASWCPPCRGFTPVL 50 (144)
T ss_dssp BBCTTSCBCSGGGT--TCEEEEEEECTTCHHHHHHHHHH
T ss_pred eccCCCEEeHHHhC--CCEEEEEeChhhCccchhhhHHH
Confidence 34578999888775 67888888643 66664444333
Done!