Query 023824
Match_columns 276
No_of_seqs 125 out of 588
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 13:24:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023824.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023824hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3emn_X Voltage-dependent anion 100.0 2.3E-69 8E-74 479.1 38.6 272 2-276 13-295 (295)
2 3emn_X Voltage-dependent anion 98.6 3.3E-05 1.1E-09 68.0 25.1 185 28-218 96-292 (295)
3 3bs0_A TODX; beta barrel, oute 91.7 7.6 0.00026 35.2 18.2 75 180-256 279-397 (439)
4 3nsg_A Outer membrane protein 89.9 9.6 0.00033 33.4 18.4 117 156-275 171-340 (341)
5 3bry_A TBUX; beta barrel, oute 87.5 16 0.00054 33.0 18.0 76 180-259 279-360 (441)
6 3pgu_A Long-chain fatty acid t 87.2 7.8 0.00027 35.2 12.3 75 180-260 273-350 (427)
7 3prn_A Porin; integral membran 86.3 15 0.00052 31.6 16.5 113 157-274 163-289 (289)
8 3dwo_X Probable outer membrane 85.8 21 0.00071 32.6 19.0 48 180-229 286-355 (451)
9 2por_A Porin; HET: C8E; 1.80A 82.3 23 0.00078 30.3 15.9 63 211-274 230-299 (301)
10 1uyn_X NALP; autotransporter, 68.6 36 0.0012 29.0 10.1 64 196-259 210-291 (308)
11 1pho_A Phosphoporin; outer mem 65.4 64 0.0022 27.5 18.5 116 156-274 166-328 (330)
12 3kvn_X Esterase ESTA; beta bar 60.0 1.2E+02 0.004 28.7 17.0 64 196-259 534-615 (632)
13 3vy8_X Outer membrane protein; 59.9 90 0.0031 27.4 12.6 100 156-259 184-335 (355)
14 2fgq_X OMP32, outer membrane p 59.5 85 0.0029 27.0 16.0 118 138-258 146-295 (332)
15 2wjr_A Probable N-acetylneuram 56.5 23 0.00078 29.0 6.1 28 179-206 53-80 (214)
16 3prn_A Porin; integral membran 53.9 1E+02 0.0036 26.3 18.3 128 104-234 131-274 (289)
17 2zfg_A Outer membrane protein 52.9 1.1E+02 0.0038 26.3 18.6 116 156-274 172-338 (340)
18 2lme_A Adhesin YADA; trimeric 48.9 60 0.002 23.2 6.6 34 197-232 55-88 (105)
19 3vy8_X Outer membrane protein; 39.4 1.9E+02 0.0066 25.2 17.7 21 210-230 309-329 (355)
20 4e1t_A Invasin; outer membrane 39.0 1.7E+02 0.0058 24.4 16.9 36 138-173 64-100 (245)
21 3qra_A AIL, attachment invasio 37.9 1.3E+02 0.0045 22.8 11.7 23 235-257 116-138 (157)
22 1pho_A Phosphoporin; outer mem 36.1 2E+02 0.0067 24.3 15.3 73 155-229 207-301 (330)
23 4e1t_A Invasin; outer membrane 35.7 67 0.0023 26.8 5.7 20 155-174 166-186 (245)
24 2j1n_A Outer membrane protein 35.5 2.1E+02 0.0072 24.5 16.9 101 156-259 178-320 (346)
25 4e1s_A Intimin; outer membrane 34.3 91 0.0031 26.0 6.3 82 84-165 117-203 (242)
26 3qq2_A BRKA autotransporter; b 27.7 2.5E+02 0.0087 23.0 9.3 63 196-258 190-265 (284)
27 2por_A Porin; HET: C8E; 1.80A 25.0 3.1E+02 0.01 23.0 14.4 24 209-232 259-282 (301)
28 3bry_A TBUX; beta barrel, oute 24.7 3.6E+02 0.012 23.7 15.6 23 235-257 378-400 (441)
29 2j1n_A Outer membrane protein 21.5 3.8E+02 0.013 22.8 16.9 73 156-230 219-315 (346)
30 2wjr_A Probable N-acetylneuram 21.0 3.3E+02 0.011 21.9 9.6 18 185-204 20-37 (214)
No 1
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=100.00 E-value=2.3e-69 Score=479.14 Aligned_cols=272 Identities=20% Similarity=0.336 Sum_probs=261.1
Q ss_pred CCCCCCcccccccccccccCCCCCc-ceEEEEEecCCCeEEEEEEEecC--CeeeeEEEEEEEEeC--eEEEEEEcCCCc
Q 023824 2 SKGPGLFADIGKKAKDLLTKDYNAD-QKISISTYSGAGVALTSTAVKKG--GLSAGDVAAQYKYKN--VLFDVKVDTESN 76 (276)
Q Consensus 2 ~~~P~~f~dl~K~akdll~k~y~~~-~~l~~~t~~~~g~~~~~~~~~~~--~~~~g~~~~k~~~~~--~~~~~~~~t~~~ 76 (276)
|.+||+|.||||.|||||+|||+++ |+|+|+|++++|++|++++++++ +++.|+||++|++++ ++++++|+|+|.
T Consensus 13 ~~~pp~y~DigK~AkDll~kdy~~~~~kl~~kt~s~~gv~ft~~g~~~~~~~~v~g~le~kyk~~~~g~t~~~kw~t~n~ 92 (295)
T 3emn_X 13 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNT 92 (295)
T ss_dssp CCSCCCGGGTTHHHHHHHHTTCCTTEEEEEEECCCSSEEEEEEEEEEETTTCCEEEEEEEEEEETTTTEEEEEEEETTSC
T ss_pred cCCCCcccccccchHHhccCCcCCCCEEEEEEEEcCCCEEEEEEEEecCCCCceeeEEEEEEEecCCcEEEEEEEeCCCc
Confidence 7899999999999999999999999 99999999999999999998876 899999999999985 899999999999
Q ss_pred eEEEEEEcc-ccCCceEEEEEEe-cC--CCceeEEEEEcccceeEEEEEec-CCCCeEEEEEEeccCcceeeeEEEEEcC
Q 023824 77 ILTTFTLTE-ILPSTKAIASLKV-PD--YNSGKLEVQYFHDHATFTSAIAL-NQSPCIDVTATIGTPSIAFGAEAGYDTT 151 (276)
Q Consensus 77 l~~~i~~~~-~~~Glk~~~~~~~-p~--~~~~k~~~~y~~~~~~~~~~~~l-~~~p~~~~s~~~~~~~~~lG~e~~yd~~ 151 (276)
|.++|++++ ++||+|+.+++.+ |+ .+++|++++|+++++++++++++ ..+|.++.++++++++|++|+|+.||.+
T Consensus 93 l~t~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g~~~~~~G~e~~yd~~ 172 (295)
T 3emn_X 93 LGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETS 172 (295)
T ss_dssp EEEEEEEESSSSTTEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred EEEEEEEccccCCceEEEEEEEECCCCCCcceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEEeeCCEEEEEEEEEEeC
Confidence 999999999 9999999999986 76 37999999999999999999998 4799999999999999999999999999
Q ss_pred CCcceeeEEEEEEeCCCcEEEEEEcCCCCeEEEEEEEEeCCccceeEEEEEEEEccCCccEEEEEEEEeeCCCCeEEEEE
Q 023824 152 SGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKL 231 (276)
Q Consensus 152 ~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~~~ld~~~~~Kakv 231 (276)
.+++++|+++++|+.+||++++++++ ++.+++|||||++|++ ++|+|+.|+...++++++||+||++|+++++||||
T Consensus 173 ~~~~t~~n~~~gY~~~d~~~s~~l~~-~~~~~aSy~qkvs~~~--~~g~e~~~~~~~~~~~~tvG~ky~ld~~~~vKakv 249 (295)
T 3emn_X 173 KSRVTQSNFAVGYKTDEFQLHTNVND-GTEFGGSIYQKVNKKL--ETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKV 249 (295)
T ss_dssp TTEEEEEEEEEEEECSSEEEEEEEET-TTEEEEEEEEECSSSE--EEEEEEEEETTEEEEEEEEEEEECCSSSEEEEEEE
T ss_pred CCCeeeEEEEEEEcCCCEEEEEEECC-CCeEEEEEEEECCCce--EEEEEEEEeccCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 99999999999999999999999998 7999999999999995 99999999998899999999999999999999999
Q ss_pred cCCceeEEEEEEEecCCeEEEEEEEeecccCC-CCCeeEEEEEEeC
Q 023824 232 NNHGKLGALLQHEVIPKSLLTISSEVDTKALE-KTPRFGLAIALKP 276 (276)
Q Consensus 232 ~s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~-~~~k~G~~l~~~~ 276 (276)
|++|.|+++|||+|+|++++++|+++|+++++ +.||||++|+||+
T Consensus 250 n~~g~v~~~y~~kl~p~v~ltls~~iD~~~l~~~~~K~Gl~l~l~~ 295 (295)
T 3emn_X 250 NNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 295 (295)
T ss_dssp ETTSEEEEEEEEEEETTEEEEEEEEEESSCTTTSCCEEEEEEEEEC
T ss_pred CCCCEEEEEEEEecCCCcEEEEEEEECccccCCCCCcEEEEEEEeC
Confidence 99999999999999999999999999999986 4699999999985
No 2
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=98.62 E-value=3.3e-05 Score=67.96 Aligned_cols=185 Identities=14% Similarity=0.190 Sum_probs=125.2
Q ss_pred eEEEEEecCCCeEEEEEEEec--CCeeeeEEEEEEEEeCeEEE--EEEcCCC-ceEEEEEEccccCCceEEEEEEe--cC
Q 023824 28 KISISTYSGAGVALTSTAVKK--GGLSAGDVAAQYKYKNVLFD--VKVDTES-NILTTFTLTEILPSTKAIASLKV--PD 100 (276)
Q Consensus 28 ~l~~~t~~~~g~~~~~~~~~~--~~~~~g~~~~k~~~~~~~~~--~~~~t~~-~l~~~i~~~~~~~Glk~~~~~~~--p~ 100 (276)
+|++..+-..|+......... .+.-.+.++.+|+.+.+.+. ...+..+ .+.....+. .+|+-+-.++.+ +.
T Consensus 96 ~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g--~~~~~~G~e~~yd~~~ 173 (295)
T 3emn_X 96 EITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLG--YEGWLAGYQMNFETSK 173 (295)
T ss_dssp EEEEESSSSTTEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEEE--ETTEEEEEEEEEETTT
T ss_pred EEEEccccCCceEEEEEEEECCCCCCcceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEEe--eCCEEEEEEEEEEeCC
Confidence 455555445676665555432 24558899999998766554 3332222 344443332 366666555543 32
Q ss_pred C--CceeEEEEEcccceeEEEEEecCCCCeEEEEEEe-ccCcceeeeEEEEEcCCCcceeeEEEEEEeC-CCcEEEEEEc
Q 023824 101 Y--NSGKLEVQYFHDHATFTSAIALNQSPCIDVTATI-GTPSIAFGAEAGYDTTSGNFTKYTAGISVTK-PDSCASIILG 176 (276)
Q Consensus 101 ~--~~~k~~~~y~~~~~~~~~~~~l~~~p~~~~s~~~-~~~~~~lG~e~~yd~~~~~~~~~~~a~~y~~-~~~~~~~~~~ 176 (276)
. ....+.++|..+++.+.+.++ +...+.+|... ..+++.+|+|+.|+... +-+..++|..|.- ++..+.++++
T Consensus 174 ~~~t~~n~~~gY~~~d~~~s~~l~--~~~~~~aSy~qkvs~~~~~g~e~~~~~~~-~~~~~tvG~ky~ld~~~~vKakvn 250 (295)
T 3emn_X 174 SRVTQSNFAVGYKTDEFQLHTNVN--DGTEFGGSIYQKVNKKLETAVNLAWTAGN-SNTRFGIAAKYQVDPDACFSAKVN 250 (295)
T ss_dssp TEEEEEEEEEEEECSSEEEEEEEE--TTTEEEEEEEEECSSSEEEEEEEEEETTE-EEEEEEEEEEECCSSSEEEEEEEE
T ss_pred CCeeeEEEEEEEcCCCEEEEEEEC--CCCeEEEEEEEECCCceEEEEEEEEeccC-CCcEEEEEEEEEcCCCCEEEEEEC
Confidence 2 346678999999999988875 44567777766 45889999999999754 3457888888976 6899999999
Q ss_pred CCCCeEEEEEEEEeCCccceeEEEEEEEE-ccCCccEEEEEEE
Q 023824 177 DKGDTIRASYVHHLDNLKKSAAVGEITRR-FSTNENTFTVGGS 218 (276)
Q Consensus 177 ~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~-~~~~~~~~~vG~~ 218 (276)
+ ...+.+.|-|++.|.+.+.+++|+... +..+...+.+|..
T Consensus 251 ~-~g~v~~~y~~kl~p~v~ltls~~iD~~~l~~~~~K~Gl~l~ 292 (295)
T 3emn_X 251 N-SSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLE 292 (295)
T ss_dssp T-TSEEEEEEEEEEETTEEEEEEEEEESSCTTTSCCEEEEEEE
T ss_pred C-CCEEEEEEEEecCCCcEEEEEEEECccccCCCCCcEEEEEE
Confidence 9 589999999999998755666676653 3335556655553
No 3
>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*
Probab=91.66 E-value=7.6 Score=35.22 Aligned_cols=75 Identities=9% Similarity=0.148 Sum_probs=49.5
Q ss_pred CeEEEEEEEEeCCccceeEEEEEEEEccCC--------------------------ccEEEEEEEEeeCCCCeEEEEEc-
Q 023824 180 DTIRASYVHHLDNLKKSAAVGEITRRFSTN--------------------------ENTFTVGGSYAVDHLTVVKAKLN- 232 (276)
Q Consensus 180 ~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~--------------------------~~~~~vG~~~~ld~~~~~Kakv~- 232 (276)
..+.++..|++.++| .+.+++.|...+. ...+++|++|++++..++|+=+.
T Consensus 279 ~~~~~g~~~~~~~~~--~l~~d~~~~~WS~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRaG~~y 356 (439)
T 3bs0_A 279 ASLTLGLAHQFNERW--VVAADIKRAYWGDVMDSMNVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRAGYSY 356 (439)
T ss_dssp CEEEEEEEEESSSSE--EEEEEEEEECGGGCCC-CCCEEEETTEEEEECCCCCCCCEEEEEEEEEEECSSSEEEEEEEEE
T ss_pred cEEEEeEEEEeCCCE--EEEEEEEEEEccchhhheeeeecCCCCCccccCCCCceeeeEEEEEEEEEcCCCEEEEEeeEc
Confidence 678999999999997 9999988864332 23467777777777777776431
Q ss_pred -----------------CCceeEEEEEEEecCCeEEEEEEE
Q 023824 233 -----------------NHGKLGALLQHEVIPKSLLTISSE 256 (276)
Q Consensus 233 -----------------s~g~v~~~~~~~l~~~~~l~ls~~ 256 (276)
+...+++....++.+++.+.++.+
T Consensus 357 d~sp~~~~~~~~~~p~~~~~~~s~G~gy~~~~~~~id~a~~ 397 (439)
T 3bs0_A 357 AQQALDSELILPVIPAYLKRHVTFGGEYDFDKDSRINLAIS 397 (439)
T ss_dssp CC------CCCTTSCCCCSEEEEEEEEEESSSSEEEEEEEE
T ss_pred ccCCCCcccccccccCccceEEEeeeEEEcCCCcEEEEEEE
Confidence 112345555556655555555544
No 4
>3nsg_A Outer membrane protein F; porin, beta barrel, beta barrel MEMB protein; HET: LDA TAM FLC TLA; 2.79A {Salmonella enterica subsp}
Probab=89.88 E-value=9.6 Score=33.41 Aligned_cols=117 Identities=5% Similarity=-0.041 Sum_probs=74.9
Q ss_pred eeeEEEEEEeCCCcEEEEEEcCC---------------CCeEEEEEEEEeCCccceeEEEEEEEEc--------------
Q 023824 156 TKYTAGISVTKPDSCASIILGDK---------------GDTIRASYVHHLDNLKKSAAVGEITRRF-------------- 206 (276)
Q Consensus 156 ~~~~~a~~y~~~~~~~~~~~~~~---------------~~~~~~Sy~~kv~~~~~~~~g~e~~~~~-------------- 206 (276)
..|.+++.|..+.+.+.+-.... ...+.+.--..+.+- .+++...+..
T Consensus 171 ~~~~~~~~Y~~g~l~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~g~~Y~~g~~---~l~a~Y~~~~~~~~~~~~~~~~~~ 247 (341)
T 3nsg_A 171 DGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANNV---YLAAVYAETRNMSIVENTVTDTVE 247 (341)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEECCCSTTSSSSSCCSCEEEEEEEEEEEETTE---EEEEEEEEESSCCCEECTTTCCEE
T ss_pred ceEEEEEEEEcCCEEEEEEEEeecCcccccccccCccceEEEEEEeEEEeCCE---EEEEEEEEEEeccccCcccccccc
Confidence 45888888888888777654210 122333333445542 6666665532
Q ss_pred -cCCccEEEEEEEEeeCCCCeEEEEE-----cC----------CceeEEEEEEEecCCeEEEEEEEeeccc--------C
Q 023824 207 -STNENTFTVGGSYAVDHLTVVKAKL-----NN----------HGKLGALLQHEVIPKSLLTISSEVDTKA--------L 262 (276)
Q Consensus 207 -~~~~~~~~vG~~~~ld~~~~~Kakv-----~s----------~g~v~~~~~~~l~~~~~l~ls~~~d~~~--------~ 262 (276)
..+...++++++|++.+..++++-. +. .-.+.+.+.+.|+++..+-+...++.-+ .
T Consensus 248 ~~~~~~~~~~ga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~lg~~Y~LSKrT~lY~~y~~~~~~~~~~~~~~~ 327 (341)
T 3nsg_A 248 MANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDYRFNLLDENDYSSSYV 327 (341)
T ss_dssp CCSEEEEEEEEEEECCTTSCCEEEEEEEEEEESCTTTTSCEEEEEEEEEEEEECCCSSEEEEEEEEEECCCCCSSCTTTT
T ss_pred cceEEEEEEEEEEEEecCCcEEEEEEEEEeccccccccCCcCccEEEEEEEEEEecCCEEEEEEEEEecccCcccccccc
Confidence 1234678999999998877776532 11 1247888999999999998888887632 1
Q ss_pred CCCCeeEEEEEEe
Q 023824 263 EKTPRFGLAIALK 275 (276)
Q Consensus 263 ~~~~k~G~~l~~~ 275 (276)
+..-.+++|+..+
T Consensus 328 ~~dd~~~vGlry~ 340 (341)
T 3nsg_A 328 GTDDQAAVGITYQ 340 (341)
T ss_dssp CSSCEEEEEEEEE
T ss_pred CcCCEEEEEEEEE
Confidence 1236899988753
No 5
>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii}
Probab=87.52 E-value=16 Score=32.97 Aligned_cols=76 Identities=9% Similarity=0.052 Sum_probs=46.6
Q ss_pred CeEEEEEEEEeCCccceeEEEEEEEEccCC-ccEEEEEEEEeeCC-----CCeEEEEEcCCceeEEEEEEEecCCeEEEE
Q 023824 180 DTIRASYVHHLDNLKKSAAVGEITRRFSTN-ENTFTVGGSYAVDH-----LTVVKAKLNNHGKLGALLQHEVIPKSLLTI 253 (276)
Q Consensus 180 ~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~-~~~~~vG~~~~ld~-----~~~~Kakv~s~g~v~~~~~~~l~~~~~l~l 253 (276)
..+.++..|++.++| .+.+++.|...+. -..+.+-. .-+. .....-...+.+.+++..|.++++.+++..
T Consensus 279 ~~~~~g~~~~~~~~~--~l~~d~~~~~wS~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRa 354 (441)
T 3bry_A 279 AQLTVGISHQFNDQL--SVSADYQRVFWSSVMKDMNVGF--VQSGSAANLDLSLPQNYRDISVFGIGAEYRYNAKWTFRG 354 (441)
T ss_dssp CEEEEEEEEESSSSE--EEEEEEEEECGGGCCSEEEEEE--CCSSSCCCCCCEEECCCCCEEEEEEEEEEEEETTEEEEE
T ss_pred cEEEEeEEEEeCCCE--EEEEEEEEEEccchhhheeeec--cCCcccccccccCCCCceeceEEEEEEEEEcCCCeEEEE
Confidence 678899999999997 9999998865443 22222211 0000 011223334556677777777777777777
Q ss_pred EEEeec
Q 023824 254 SSEVDT 259 (276)
Q Consensus 254 s~~~d~ 259 (276)
+...|.
T Consensus 355 G~~yd~ 360 (441)
T 3bry_A 355 GFHYAQ 360 (441)
T ss_dssp EEEEEE
T ss_pred eeeccc
Confidence 776666
No 6
>3pgu_A Long-chain fatty acid transport protein; outer membrane beta barrel, lipid transport, outer membrane; HET: C8E 2PE OLA; 1.70A {Escherichia coli k-12} SCOP: f.4.3.4 PDB: 3pgs_A* 1t16_A* 1t1l_A* 3dwn_A* 2r4p_A* 3pgr_A* 2r4n_A* 2r4l_A* 2r89_A 2r4o_A* 3pf1_A* 2r8a_A* 2r88_A
Probab=87.17 E-value=7.8 Score=35.22 Aligned_cols=75 Identities=5% Similarity=-0.116 Sum_probs=47.3
Q ss_pred CeEEEEEEEEeCCccceeEEEEEEEEccCCccEEEEEEEEeeCCCC---eEEEEEcCCceeEEEEEEEecCCeEEEEEEE
Q 023824 180 DTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLT---VVKAKLNNHGKLGALLQHEVIPKSLLTISSE 256 (276)
Q Consensus 180 ~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~~~ld~~~---~~Kakv~s~g~v~~~~~~~l~~~~~l~ls~~ 256 (276)
..+.++..|++.++| .+.+++.|...+.-..+.+-. ++.. ...-...+.+.+.+..++++++.+++..+..
T Consensus 273 ~~~~~g~~~~~~~~~--~l~~d~~~~~WS~~~~~~~~~----~~g~~~~~~~~~~~D~~~~~lG~eY~~~~~~~lRaG~~ 346 (427)
T 3pgu_A 273 EMWEVSGYNRVDPQW--AIHYSLAYTSWSQFQQLKATS----TSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIA 346 (427)
T ss_dssp EEEEEEEEEEEETTE--EEEEEEEEEEESSCSCEEEEE----ETTEEEEEECCCCEEEEEEEEEEEEECSSSEEEEEEEE
T ss_pred cEEEEEEEEecCCCE--EEEEEEEEEEeccccceEEEc----CCCcccccccCCceeccEEEEEEEEEcCCCEEEEEEEE
Confidence 577888999999997 999999987544322222211 0110 1111234556677777778888888888877
Q ss_pred eecc
Q 023824 257 VDTK 260 (276)
Q Consensus 257 ~d~~ 260 (276)
.|..
T Consensus 347 yd~s 350 (427)
T 3pgu_A 347 FDDS 350 (427)
T ss_dssp EEEC
T ss_pred EccC
Confidence 7764
No 7
>3prn_A Porin; integral membrane protein, pore eyelet mutant, membra protein; HET: C8E; 1.90A {Rhodobacter blasticus} SCOP: f.4.3.1 PDB: 1bh3_A* 1prn_A* 7prn_A* 6prn_A* 5prn_A* 2prn_A* 8prn_A* 1h6s_1
Probab=86.31 E-value=15 Score=31.57 Aligned_cols=113 Identities=13% Similarity=0.108 Sum_probs=64.7
Q ss_pred eeEEEEEEeCCCcEEEEEEc-------CCCCeEEEEEEEEeCCccceeEEEEEEEE-ccCCccEEEEEEEEeeCCCCeEE
Q 023824 157 KYTAGISVTKPDSCASIILG-------DKGDTIRASYVHHLDNLKKSAAVGEITRR-FSTNENTFTVGGSYAVDHLTVVK 228 (276)
Q Consensus 157 ~~~~a~~y~~~~~~~~~~~~-------~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~-~~~~~~~~~vG~~~~ld~~~~~K 228 (276)
.|.+++.|+..++.+++-.. + .+.+.++.=..+.+.+ .+++-..-. .......+.++..|.+ ..++|+
T Consensus 163 ~~~l~a~Yt~g~~~v~aaY~~d~ag~~D-~~~~~l~~~y~fG~~~--~v~~~Y~d~~d~~~~~~~gl~~~Y~v-~a~tv~ 238 (289)
T 3prn_A 163 EFGIAADWSNDMISLAAAYTTDAGGIVD-NDIAFVGAAYKFNDAG--TVGLNWYDNGLSTAGDQVTLYGNYAF-GATTVR 238 (289)
T ss_dssp EEEEEEEEECSSEEEEEEEEESGGGCTT-CCEEEEEEEECCSSSE--EEEEEEEECTTSTTCSEEEEEEEEEE-TTEEEE
T ss_pred eEEEEEEEecCCEEEEEEEeccCCCCCC-ccEEEEEEEEEcCCCe--EEEEEEEccccccCCceEEEEEEeEe-cCeEEE
Confidence 45555555555544444322 1 2345555555555322 444433222 1123456788888888 778888
Q ss_pred EEEcC------CceeEEEEEEEecCCeEEEEEEEeecccCCCCCeeEEEEEE
Q 023824 229 AKLNN------HGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIAL 274 (276)
Q Consensus 229 akv~s------~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~ 274 (276)
+-+.+ ....++.+++.|..+.+|..+..-+-.. .....+|+.++|
T Consensus 239 a~y~D~~~~~~~t~yGIg~~YDLGgGasl~~gy~~~~~~-~~~ad~Gv~F~F 289 (289)
T 3prn_A 239 AYVSDIDRAGADTAYGIGADYQFAEGVKVSGSVQSGFAN-ETVADVGVRFDF 289 (289)
T ss_dssp EEEEEECSTTCCCEEEEEEEEEEETTEEEEEEEEECTTC-CEEEEEEEEEEC
T ss_pred EEEeccccCCCcceEEEEEEecCCCCeEEEEEEEEcCCC-ceEEeeeeEeeC
Confidence 87653 2357899999999999998888744311 011467776654
No 8
>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa}
Probab=85.79 E-value=21 Score=32.59 Aligned_cols=48 Identities=23% Similarity=0.276 Sum_probs=33.6
Q ss_pred CeEEEEEEEEeCCccceeEEEEEEEEccC----------------------CccEEEEEEEEeeCCCCeEEE
Q 023824 180 DTIRASYVHHLDNLKKSAAVGEITRRFST----------------------NENTFTVGGSYAVDHLTVVKA 229 (276)
Q Consensus 180 ~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~----------------------~~~~~~vG~~~~ld~~~~~Ka 229 (276)
..+.++..|+++++| .+.+++.|...+ ....+++|+.|++++..++|+
T Consensus 286 ~~~~lg~~~~~~~~~--~l~~d~~~~~wS~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~eY~~~~~~tlRa 355 (451)
T 3dwo_X 286 AYASLDWVHQFNDRL--SLGASATWTEWSSFQDLTLKSHGNTIVSIPYTYRNTWTLAVGGDYKVTDQWTMRA 355 (451)
T ss_dssp CEEEEEEEEECSSSE--EEEEEEEEECGGGCCEEEEEETTEEEEEEECCCCCEEEEEEEEEEESSSSEEEEE
T ss_pred cEEEEEEEEEeCCCE--EEEEEEEEEEecCcceeEEEcCCccccccccCceeeeEEEEEEEEEeCCCEEEEE
Confidence 677788888888886 888877775322 345666667777666666666
No 9
>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB: 3por_A*
Probab=82.33 E-value=23 Score=30.33 Aligned_cols=63 Identities=5% Similarity=-0.002 Sum_probs=40.6
Q ss_pred cEEEEEE--EEeeCCCCeEEEEEc-----CCceeEEEEEEEecCCeEEEEEEEeecccCCCCCeeEEEEEE
Q 023824 211 NTFTVGG--SYAVDHLTVVKAKLN-----NHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIAL 274 (276)
Q Consensus 211 ~~~~vG~--~~~ld~~~~~Kakv~-----s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~ 274 (276)
..+.+|+ +|.+.+..++++-.. +...+++.|++.|+|++++-.+-..+-.. +....+-+|+.+
T Consensus 230 ~~~~lga~~~y~~~~~~~~~~~y~~~~~d~a~~~~lg~~Y~Ls~~~~lya~y~~~~~~-~~~~~~~~Gvr~ 299 (301)
T 2por_A 230 KAYGLSVDSTFGATTVGGYVQVLDIDTIDDVTYYGLGASYDLGGGASIVGGIADNDLP-NSDMVADLGVKF 299 (301)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEEEEETTEEEEEEEEEECSS-SCCCEEEEEEEE
T ss_pred ceEEEEEEEeEEcCCcEEEEEEEEcCCCCcccEEEEEEEEcCCCCeEEEEEEEeccCC-CCceeEEEEeEE
Confidence 4577788 888865554666553 23478999999999999997777655421 111345555543
No 10
>1uyn_X NALP; autotransporter, translocator domain, membrane protein, OUTE membrane, beta-domain, beta-barrel; HET: CXE; 2.60A {Neisseria meningitidis} SCOP: f.4.5.1 PDB: 1uyo_X*
Probab=68.55 E-value=36 Score=29.05 Aligned_cols=64 Identities=11% Similarity=-0.123 Sum_probs=40.1
Q ss_pred eeEEEEEEEEcc-CCccEEEEEEEEeeC-CCCeEEEEE----------------cCCceeEEEEEEEecCCeEEEEEEEe
Q 023824 196 SAAVGEITRRFS-TNENTFTVGGSYAVD-HLTVVKAKL----------------NNHGKLGALLQHEVIPKSLLTISSEV 257 (276)
Q Consensus 196 ~~~g~e~~~~~~-~~~~~~~vG~~~~ld-~~~~~Kakv----------------~s~g~v~~~~~~~l~~~~~l~ls~~~ 257 (276)
..+|+++.+.+. .-.....++++|.+. ....+.+.+ .+...+++.++.++.+++++.++.+-
T Consensus 210 ~~lG~r~~~~~~~~~~~~~~~~~~h~~~~~~~~~~a~f~~~~~~~F~~~g~~~~~~~~~~g~G~~~~~~~~~~l~~~y~~ 289 (308)
T 1uyn_X 210 GLAGLKLSQPLSDKAVLFATAGVERDLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVAGLGADVEFGNGWNGLARYSY 289 (308)
T ss_dssp EEEEEEEEEECSSSEEEEEEEEEEEESSCCCCCCCC-----------------CCEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred EeeeEEEEEEecCceEEEEEEEEEeccCCCCcceEEEeecCCCceEEEccccCCCceEEEeeeEEEEecCCEEEEEEEEE
Confidence 478888887763 334567888888874 332232222 12346788888899988777666655
Q ss_pred ec
Q 023824 258 DT 259 (276)
Q Consensus 258 d~ 259 (276)
..
T Consensus 290 ~~ 291 (308)
T 1uyn_X 290 AG 291 (308)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 11
>1pho_A Phosphoporin; outer membrane protein; 3.00A {Escherichia coli} SCOP: f.4.3.1
Probab=65.43 E-value=64 Score=27.50 Aligned_cols=116 Identities=5% Similarity=-0.022 Sum_probs=68.2
Q ss_pred eeeEEEEEEeCC--CcEEEEEEcCC----------------CCeEEEEEEEEeCCccceeEEEEEEEEcc---------C
Q 023824 156 TKYTAGISVTKP--DSCASIILGDK----------------GDTIRASYVHHLDNLKKSAAVGEITRRFS---------T 208 (276)
Q Consensus 156 ~~~~~a~~y~~~--~~~~~~~~~~~----------------~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~---------~ 208 (276)
..|.+++.|..+ .+.+.+..... ...+.+..-..+.+- .+++-..+... .
T Consensus 166 ~~~~~~~~Y~~g~~~l~~~a~Y~~~~~~~~~~~~~~~~~~~~~~~~~g~~Y~~g~~---~l~a~Y~~~~~~~~~~~~~~~ 242 (330)
T 1pho_A 166 DGFGTSLTYDFGGSDFAISGAYTNSDRTNEQNLQSRGTGKRAEAWATGLKYDANNI---YLATFYSETRKMTPITGGFAN 242 (330)
T ss_dssp SEEEEEEEEEETTTTEEEEEEEEEEECCGGGTTSSSSCSSEEEEEEEEEEEEETTE---EEEEEEEEEESCSCCSSSSCS
T ss_pred CeEEEEEEEEcCCCCEEEEEEEEEecccccccccccCCccchheEEEEEEEEeCCE---EEEEEEEeeEEccCCCCCcce
Confidence 458888888887 77776653210 122333333445542 66666554321 1
Q ss_pred CccEEEEEEEEeeCCCCeEEEE-----Ec---------CCceeEEEEEEEecCCeEEEEEEEeeccc------CCCCCee
Q 023824 209 NENTFTVGGSYAVDHLTVVKAK-----LN---------NHGKLGALLQHEVIPKSLLTISSEVDTKA------LEKTPRF 268 (276)
Q Consensus 209 ~~~~~~vG~~~~ld~~~~~Kak-----v~---------s~g~v~~~~~~~l~~~~~l~ls~~~d~~~------~~~~~k~ 268 (276)
+...+.+|++|++.+...+.+- .+ ..-.+.+.+.+.|++...+-+....+..+ .....-+
T Consensus 243 ~~~~~~~ga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~lg~~Y~LSKrT~lY~~y~~~~~~~~~~~~~~~~~~~ 322 (330)
T 1pho_A 243 KTQNFEAVAQYQFDFGLRPSLGYVLSKGKDIEGIGDEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNKLNINNDDIV 322 (330)
T ss_dssp EEEEEEEEEEECCSSSEEEEEEEEEEEEESBTTTBCCEEEEEEEEEEEEESSSSEEEEEEEEEECCCSSCTTCCCCCCEE
T ss_pred eeEEEEEEEEEeecCCeeEEEEEEEecccCccCCCCcceEEEEEEEEEEEecCCEEEEEEEEEccccCccccCCCCCcEE
Confidence 3456889999999776666542 21 11347788899999998887766554321 1122467
Q ss_pred EEEEEE
Q 023824 269 GLAIAL 274 (276)
Q Consensus 269 G~~l~~ 274 (276)
++|+..
T Consensus 323 ~vGirh 328 (330)
T 1pho_A 323 AVGMTY 328 (330)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 777654
No 12
>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane, cell out membrane, hydrolase, membrane, transmembrane; HET: C8E; 2.50A {Pseudomonas aeruginosa}
Probab=60.02 E-value=1.2e+02 Score=28.72 Aligned_cols=64 Identities=9% Similarity=-0.007 Sum_probs=45.3
Q ss_pred eeEEEEEEEEcc-CCccEEEEEEEEeeC-CCCeEEEEEcC----------------CceeEEEEEEEecCCeEEEEEEEe
Q 023824 196 SAAVGEITRRFS-TNENTFTVGGSYAVD-HLTVVKAKLNN----------------HGKLGALLQHEVIPKSLLTISSEV 257 (276)
Q Consensus 196 ~~~g~e~~~~~~-~~~~~~~vG~~~~ld-~~~~~Kakv~s----------------~g~v~~~~~~~l~~~~~l~ls~~~ 257 (276)
..+|+++.+.+. .-.+.+.++++|.+. ....+++.+.+ .+.+++..+.++.+++++.+..+-
T Consensus 534 ~~lG~r~~~~~~~~~~p~~~~~~~h~f~~~~~~~~~~f~~~~~~~f~~~g~~~~~~~~~~g~G~~~~~~~~~sl~~~y~~ 613 (632)
T 3kvn_X 534 LGAGLQGKYAFGSDTQLFAEYAHEREYEDDTQDLTMSLNSLPGNRFTLEGYTPQDHLNRVSLGFSQKLAPELSLRGGYNW 613 (632)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEEESCCCCCEEEEEETTCTTCCEEEECCCCCSEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEEecceEEEEEEEEEehhhCCCCcceEEEeecCCCCceEEccccCCCCEEEEEEEEEEEECCCEEEEEEEEE
Confidence 478888888765 346778888888884 44667776655 234788888899988777666654
Q ss_pred ec
Q 023824 258 DT 259 (276)
Q Consensus 258 d~ 259 (276)
..
T Consensus 614 ~~ 615 (632)
T 3kvn_X 614 RK 615 (632)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 13
>3vy8_X Outer membrane protein; beta-barrel, porin, channel; 2.12A {Neisseria meningitidis} PDB: 3a2r_X* 3a2t_X* 3a2u_X* 3a2s_X 3vy9_X 3vzt_X 3vzw_X*
Probab=59.94 E-value=90 Score=27.36 Aligned_cols=100 Identities=8% Similarity=0.054 Sum_probs=60.5
Q ss_pred eeeEEEEEEeCCCcEEEEE--EcC----------------------CCCeEEEEEEEEeCCccceeEEEEEEEEc--c--
Q 023824 156 TKYTAGISVTKPDSCASII--LGD----------------------KGDTIRASYVHHLDNLKKSAAVGEITRRF--S-- 207 (276)
Q Consensus 156 ~~~~~a~~y~~~~~~~~~~--~~~----------------------~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~--~-- 207 (276)
..|.+++.|..+.+.+.+- ... +.+.+.+..-..+++- .+++...... .
T Consensus 184 ~~~~~~~~Y~~g~~~~~~a~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lga~Yd~~~~---~laa~Y~~~~~~~~~ 260 (355)
T 3vy8_X 184 ESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGYDANDL---YVSVAGQYEAAKNNE 260 (355)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEEEEEECTTSCBCCTTCTTCEEEEEEEEEEEEEEEEETTE---EEEEEEEEEEEEECS
T ss_pred cEEEEEEEEecCCEEEEEEhhehhccccccccccccccccccccCCcceEEEEEEEEEecCE---EEEEEEEEecccccc
Confidence 4588888888877776555 211 0122333333445532 6666555431 1
Q ss_pred --------CCccEEEEEEEEeeCCCCeEEEEE--------cC-------CceeEEEEEEEecCCeEEEEEE-Eeec
Q 023824 208 --------TNENTFTVGGSYAVDHLTVVKAKL--------NN-------HGKLGALLQHEVIPKSLLTISS-EVDT 259 (276)
Q Consensus 208 --------~~~~~~~vG~~~~ld~~~~~Kakv--------~s-------~g~v~~~~~~~l~~~~~l~ls~-~~d~ 259 (276)
.+...++++++|++++ .++++.. +. .-.+.+.+.+.|++++.+-+.. .++-
T Consensus 261 ~~~~~~~~~k~~~~~l~a~Y~~g~-~~~~~sY~~~~k~k~~~~~~~~~~~~~~~vG~~Y~lsKrt~~Ya~y~~~~n 335 (355)
T 3vy8_X 261 VGSIKGKKHEQTQVAATAAYRFGN-VTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQ 335 (355)
T ss_dssp SSTTTTCEEEEEEEEEEEEECBTT-EEEEEEEEEECCEEETTEEEGGGCEEEEEEEEEEESSSSEEEEEEEEEEEE
T ss_pred ccccccccceeeEEEEEEEEEcCC-eEEEEEEEEeccccccccccCCCcceEEEEEEEEEcCCCeEEEEEEEEEEc
Confidence 1456899999999965 6655433 21 2258899999999998777665 3443
No 14
>2fgq_X OMP32, outer membrane porin protein 32; malate, outer membrane protein, membrane protein; HET: BOG; 1.45A {Delftia acidovorans} SCOP: f.4.3.1 PDB: 2fgr_A 1e54_A
Probab=59.51 E-value=85 Score=26.96 Aligned_cols=118 Identities=14% Similarity=0.078 Sum_probs=70.8
Q ss_pred CcceeeeEEEEEcCC------CcceeeEEEEEEeCCCcEEEEEEcCC----------CCeEEEEEEEEeCCccceeEEEE
Q 023824 138 PSIAFGAEAGYDTTS------GNFTKYTAGISVTKPDSCASIILGDK----------GDTIRASYVHHLDNLKKSAAVGE 201 (276)
Q Consensus 138 ~~~~lG~e~~yd~~~------~~~~~~~~a~~y~~~~~~~~~~~~~~----------~~~~~~Sy~~kv~~~~~~~~g~e 201 (276)
.+|.+++...+.-.. ..-..|.+++.|....+.+.+-.... ...+.+..-.++.+- .+++.
T Consensus 146 ~G~~~~a~Y~~g~~~~~g~~~~~~~~~~~~~~Y~~g~~~~~~~Y~~~~~~~~~~~~~~~~~~~g~~Y~~g~~---~l~~~ 222 (332)
T 2fgq_X 146 GGFNAGFGYAFDEKQTIGTADSVGRYIGGYVAYDNGPLSASLGLAQQKTAVGGLATDRDEITLGASYNFGVA---KLSGL 222 (332)
T ss_dssp TTEEEEEEEECCTTCCBTTBSSTTCEEEEEEEEECSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEEECSSC---EEEEE
T ss_pred CCEEEEEEEEcCCCCcCCCCCCCCcEEEEEEEEecCCEEEEEEEEEEecCCCCcccceEEEEEEEEEEECCE---EEEEE
Confidence 446666665542111 11245888888888888776654220 122233333355542 66665
Q ss_pred EEEEc-------cCCccEEEEEEEEeeCCCCeEEEEEcC---------CceeEEEEEEEecCCeEEEEEEEee
Q 023824 202 ITRRF-------STNENTFTVGGSYAVDHLTVVKAKLNN---------HGKLGALLQHEVIPKSLLTISSEVD 258 (276)
Q Consensus 202 ~~~~~-------~~~~~~~~vG~~~~ld~~~~~Kakv~s---------~g~v~~~~~~~l~~~~~l~ls~~~d 258 (276)
..+.. ..+...+.+|++|++.+...+++-... .-.+.+.+.+.|+++..+-+.....
T Consensus 223 Y~~~~~~~~~~~~~~~~~~~~ga~y~~t~~~~~~~~y~~~~~~~~~~~~~~~~lg~~Y~LSKrT~lY~~~~~~ 295 (332)
T 2fgq_X 223 LQQTKFKRDIGGDIKTNSYMLGASAPVGGVGEVKLQYALYDQKAIDSKAHQITLGYVHNLSKRTALYGNLAFL 295 (332)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEEGGGTEEEEEEEEEEEEESSSSEEEEEEEEEE
T ss_pred EEEEEccCCCCCcceeeEEEEEEEEEecCceEEEEEEEEEccCCCCCCeEEEEEEEEEccccchHheeeeeeE
Confidence 55432 113466899999999777778764321 1357788999999998877766544
No 15
>2wjr_A Probable N-acetylneuraminic acid outer membrane C protein NANC; cell membrane, ION transport, transmembrane, porin, membrane transport; HET: EPE; 1.80A {Escherichia coli} PDB: 2wjq_A*
Probab=56.54 E-value=23 Score=29.01 Aligned_cols=28 Identities=11% Similarity=-0.046 Sum_probs=21.7
Q ss_pred CCeEEEEEEEEeCCccceeEEEEEEEEc
Q 023824 179 GDTIRASYVHHLDNLKKSAAVGEITRRF 206 (276)
Q Consensus 179 ~~~~~~Sy~~kv~~~~~~~~g~e~~~~~ 206 (276)
+.++.++|..|+++++-++-|..+.+..
T Consensus 53 g~E~~~~Y~~k~~d~~~l~PG~~~~~~s 80 (214)
T 2wjr_A 53 DVQVEVNYAIKLDDQWTVRPGMLTHFSS 80 (214)
T ss_dssp EEEEEEEECEESSSSEEEEEEEEEEEET
T ss_pred cEEEEEEEEEEcCCCEEEecceEEEecC
Confidence 5788999999999987566677766654
No 16
>3prn_A Porin; integral membrane protein, pore eyelet mutant, membra protein; HET: C8E; 1.90A {Rhodobacter blasticus} SCOP: f.4.3.1 PDB: 1bh3_A* 1prn_A* 7prn_A* 6prn_A* 5prn_A* 2prn_A* 8prn_A* 1h6s_1
Probab=53.92 E-value=1e+02 Score=26.30 Aligned_cols=128 Identities=10% Similarity=0.080 Sum_probs=79.9
Q ss_pred eeEEEEEcccceeEEEEEecCC--------CCeEEEEEEeccCcceeeeEEEEEcCC-CcceeeEEEEEEeCC-CcEEEE
Q 023824 104 GKLEVQYFHDHATFTSAIALNQ--------SPCIDVTATIGTPSIAFGAEAGYDTTS-GNFTKYTAGISVTKP-DSCASI 173 (276)
Q Consensus 104 ~k~~~~y~~~~~~~~~~~~l~~--------~p~~~~s~~~~~~~~~lG~e~~yd~~~-~~~~~~~~a~~y~~~-~~~~~~ 173 (276)
.-+.++|.-..|++.++..... ...+...+.+...++.+|+-...|... .....|.++++|.-. .+.+.+
T Consensus 131 ~~l~~~ys~Ggfs~~~Sy~~~~~~~~~~~~~d~~~l~a~Yt~g~~~v~aaY~~d~ag~~D~~~~~l~~~y~fG~~~~v~~ 210 (289)
T 3prn_A 131 NGIAVTYSISGVNLYLSYVDPDQTVDSSLVTEEFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFNDAGTVGL 210 (289)
T ss_dssp EEEEEEEECSSEEEEEEEEETTTTSCGGGSCCEEEEEEEEECSSEEEEEEEEESGGGCTTCCEEEEEEEECCSSSEEEEE
T ss_pred ceEEEEEEecCEEEEEEEEccCCCcccccccceEEEEEEEecCCEEEEEEEeccCCCCCCccEEEEEEEEEcCCCeEEEE
Confidence 4577888888888877775432 123444444445556666553322211 112568888999888 888888
Q ss_pred EEcCC-----CCeEEEEEEEEeCCccceeEEEEEE-EEccCCccEEEEEEEEeeCCCCeEEEEEcCC
Q 023824 174 ILGDK-----GDTIRASYVHHLDNLKKSAAVGEIT-RRFSTNENTFTVGGSYAVDHLTVVKAKLNNH 234 (276)
Q Consensus 174 ~~~~~-----~~~~~~Sy~~kv~~~~~~~~g~e~~-~~~~~~~~~~~vG~~~~ld~~~~~Kakv~s~ 234 (276)
...+. ...+.++.=.++++- .+.+-+. .......+.+.||++|.|-..+++++-+...
T Consensus 211 ~Y~d~~d~~~~~~~gl~~~Y~v~a~---tv~a~y~D~~~~~~~t~yGIg~~YDLGgGasl~~gy~~~ 274 (289)
T 3prn_A 211 NWYDNGLSTAGDQVTLYGNYAFGAT---TVRAYVSDIDRAGADTAYGIGADYQFAEGVKVSGSVQSG 274 (289)
T ss_dssp EEEECTTSTTCSEEEEEEEEEETTE---EEEEEEEEECSTTCCCEEEEEEEEEEETTEEEEEEEEEC
T ss_pred EEEccccccCCceEEEEEEeEecCe---EEEEEEeccccCCCcceEEEEEEecCCCCeEEEEEEEEc
Confidence 87652 235666666667432 4444333 1223467899999999999899999876643
No 17
>2zfg_A Outer membrane protein F; OMPF porin, ordered waters, ION transport, phage recognition, transmembrane, transport; HET: C8E; 1.59A {Escherichia coli} SCOP: f.4.3.1 PDB: 1opf_A* 2omf_A* 2zld_A 3k19_A 3k1b_A 3o0e_A* 3poq_A* 3pou_A* 3pox_A* 3hw9_A* 3hwb_A* 1hxx_A 3fyx_A* 1bt9_A 1mpf_A* 1gfq_A* 1gfp_A* 1gfm_A* 1gfo_A* 1hxu_A ...
Probab=52.93 E-value=1.1e+02 Score=26.26 Aligned_cols=116 Identities=6% Similarity=-0.069 Sum_probs=67.1
Q ss_pred eeeEEEEEEeCCCcEEEEEEcCC----------------CCeEEEEEEEEeCCccceeEEEEEEEEc-------------
Q 023824 156 TKYTAGISVTKPDSCASIILGDK----------------GDTIRASYVHHLDNLKKSAAVGEITRRF------------- 206 (276)
Q Consensus 156 ~~~~~a~~y~~~~~~~~~~~~~~----------------~~~~~~Sy~~kv~~~~~~~~g~e~~~~~------------- 206 (276)
..|.+++.|..+.+.+.+-.... ...+.+..-..+.+ +.+++......
T Consensus 172 ~~~~~~~~Y~~g~l~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~g~~Y~~~~---~~l~a~Y~~~~~~~~~~~~~~~~~ 248 (340)
T 2zfg_A 172 DGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANN---IYLAANYGETRNATPITNKFTNTS 248 (340)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECCHHHHTSSBCCCSEEEEEEEEEEEEETT---EEEEEEEEEEESCSEEEETTTTEE
T ss_pred CeEEEEEEEecCCEEEEEEEEEecCcccccccccCCCceeeEEEEEEEEEcCC---EEEEEEEEEEEecCcCCccccccc
Confidence 45888888888877776653210 01223332234443 25555554421
Q ss_pred --cCCccEEEEEEEEeeCCCCeEEEE-----Ec---------CCceeEEEEEEEecCCeEEEEEEEeeccc------CCC
Q 023824 207 --STNENTFTVGGSYAVDHLTVVKAK-----LN---------NHGKLGALLQHEVIPKSLLTISSEVDTKA------LEK 264 (276)
Q Consensus 207 --~~~~~~~~vG~~~~ld~~~~~Kak-----v~---------s~g~v~~~~~~~l~~~~~l~ls~~~d~~~------~~~ 264 (276)
..+...+.++++|++.+...+.+- .+ ..-.+.+.+.+.|+++..+-+....+..+ ...
T Consensus 249 ~~~~~~~~~~~ga~y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~lg~~Y~lSKrT~lY~~~~~~~~~~~~~~~~~~ 328 (340)
T 2zfg_A 249 GFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGS 328 (340)
T ss_dssp EECSEEEEEEEEEEECCTTSEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEEETTEEEEEEEEEECCCTTCTTCCCC
T ss_pred ccceeEEEEEEEEEEEecCCeeEEEEEEEEeccccCCCCCcceEEEEEEEEEEEecCCeEEEEEEEEeccCCccccCCCC
Confidence 123456889999999877666642 11 11357888999999998887776654311 111
Q ss_pred CCeeEEEEEE
Q 023824 265 TPRFGLAIAL 274 (276)
Q Consensus 265 ~~k~G~~l~~ 274 (276)
..-+++||..
T Consensus 329 ~~~~~vGirh 338 (340)
T 2zfg_A 329 DDTVAVGIVY 338 (340)
T ss_dssp BCEEEEEEEE
T ss_pred CcEEEEEEEE
Confidence 2466777654
No 18
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=48.90 E-value=60 Score=23.20 Aligned_cols=34 Identities=15% Similarity=0.301 Sum_probs=23.7
Q ss_pred eEEEEEEEEccCCccEEEEEEEEeeCCCCeEEEEEc
Q 023824 197 AAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLN 232 (276)
Q Consensus 197 ~~g~e~~~~~~~~~~~~~vG~~~~ld~~~~~Kakv~ 232 (276)
.+++=+.. -..+..++||+.|.++++..+|+.+.
T Consensus 55 ~v~~g~G~--y~g~~AvAvG~~~~~n~~~~~~~~~s 88 (105)
T 2lme_A 55 NFTAGVGG--YRSSQALAIGSGYRVNESVALKAGVA 88 (105)
T ss_dssp EEEEEEEE--ETTEEEEEEEEEEEESSSBCCEEEEE
T ss_pred EEEEEEec--cCCceEEEEEEEEEeCCCEEEEEEEE
Confidence 55554444 34778888888888887777777554
No 19
>3vy8_X Outer membrane protein; beta-barrel, porin, channel; 2.12A {Neisseria meningitidis} PDB: 3a2r_X* 3a2t_X* 3a2u_X* 3a2s_X 3vy9_X 3vzt_X 3vzw_X*
Probab=39.39 E-value=1.9e+02 Score=25.17 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=14.2
Q ss_pred ccEEEEEEEEeeCCCCeEEEE
Q 023824 210 ENTFTVGGSYAVDHLTVVKAK 230 (276)
Q Consensus 210 ~~~~~vG~~~~ld~~~~~Kak 230 (276)
...+.||+.|.|.+++.+=+-
T Consensus 309 ~~~~~vG~~Y~lsKrt~~Ya~ 329 (355)
T 3vy8_X 309 YDQVIVGADYDFSKRTSALVS 329 (355)
T ss_dssp EEEEEEEEEEESSSSEEEEEE
T ss_pred ceEEEEEEEEEcCCCeEEEEE
Confidence 456777777777776665554
No 20
>4e1t_A Invasin; outer membrane beta barrel, adhesin, integrin, cell adhesion; HET: OLC OLB; 2.26A {Yersinia pseudotuberculosis}
Probab=39.05 E-value=1.7e+02 Score=24.38 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=24.6
Q ss_pred CcceeeeEEEEEcC-CCcceeeEEEEEEeCCCcEEEE
Q 023824 138 PSIAFGAEAGYDTT-SGNFTKYTAGISVTKPDSCASI 173 (276)
Q Consensus 138 ~~~~lG~e~~yd~~-~~~~~~~~~a~~y~~~~~~~~~ 173 (276)
++|.+|+.+-||.. ++...+.++|+-|-.+.+.+++
T Consensus 64 ~~wm~G~N~FyD~d~t~~h~R~glG~E~~~d~l~lsa 100 (245)
T 4e1t_A 64 NGWLYGLNTFYDNDLTGHNHRIGLGAEAWTDYLQLAA 100 (245)
T ss_dssp TTEEEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEE
T ss_pred CCEEEEeEEEEecCCCCCCceeEeEEEEEeCceEEEE
Confidence 78999999999854 2345667777777655544443
No 21
>3qra_A AIL, attachment invasion locus protein; beta-barrel protein, attachment and invasion virulence, LAMI heparin, cell invasion; HET: C8E; 1.80A {Yersinia pestis} SCOP: f.4.1.0 PDB: 3qrc_A*
Probab=37.94 E-value=1.3e+02 Score=22.78 Aligned_cols=23 Identities=30% Similarity=0.226 Sum_probs=15.9
Q ss_pred ceeEEEEEEEecCCeEEEEEEEe
Q 023824 235 GKLGALLQHEVIPKSLLTISSEV 257 (276)
Q Consensus 235 g~v~~~~~~~l~~~~~l~ls~~~ 257 (276)
..+++..|..+.|++.+.+.-+.
T Consensus 116 ~~~GaGvey~~~~n~~~~~eY~y 138 (157)
T 3qra_A 116 LAYGAGLQFNPHPNFVIDASYEY 138 (157)
T ss_dssp EEEEEEEEECSSTTEEEEEEEEE
T ss_pred eEEEEEEEEEecCCEEEEEEEEE
Confidence 34667777777777777776654
No 22
>1pho_A Phosphoporin; outer membrane protein; 3.00A {Escherichia coli} SCOP: f.4.3.1
Probab=36.09 E-value=2e+02 Score=24.29 Aligned_cols=73 Identities=11% Similarity=0.048 Sum_probs=41.7
Q ss_pred ceeeEEEEEEeCCCcEEEEEEcC-------------CCCeEEEEEEEEeCCccceeEEEEEEEEcc---------CCccE
Q 023824 155 FTKYTAGISVTKPDSCASIILGD-------------KGDTIRASYVHHLDNLKKSAAVGEITRRFS---------TNENT 212 (276)
Q Consensus 155 ~~~~~~a~~y~~~~~~~~~~~~~-------------~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~---------~~~~~ 212 (276)
...|.+++.|.-..+.+.+.... +...+.+..-.++.|.+ .+++...+... .+...
T Consensus 207 ~~~~~~g~~Y~~g~~~l~a~Y~~~~~~~~~~~~~~~~~~~~~~ga~Y~~~~~~--~~~~~y~~~~~~~~~~~~~~~~~~~ 284 (330)
T 1pho_A 207 AEAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAVAQYQFDFGL--RPSLGYVLSKGKDIEGIGDEDLVNY 284 (330)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEESCSCCSSSSCSEEEEEEEEEEECCSSSE--EEEEEEEEEEEESBTTTBCCEEEEE
T ss_pred hheEEEEEEEEeCCEEEEEEEEeeEEccCCCCCcceeeEEEEEEEEEeecCCe--eEEEEEEEecccCccCCCCcceEEE
Confidence 34567777777666666555321 01233444445666654 55554444211 12357
Q ss_pred EEEEEEEeeCCCCeEEE
Q 023824 213 FTVGGSYAVDHLTVVKA 229 (276)
Q Consensus 213 ~~vG~~~~ld~~~~~Ka 229 (276)
+.+|+.|.|.+.+.+=+
T Consensus 285 ~~lg~~Y~LSKrT~lY~ 301 (330)
T 1pho_A 285 IDVGATYYFNKNMSAFV 301 (330)
T ss_dssp EEEEEEEESSSSEEEEE
T ss_pred EEEEEEEEecCCEEEEE
Confidence 88999999988777654
No 23
>4e1t_A Invasin; outer membrane beta barrel, adhesin, integrin, cell adhesion; HET: OLC OLB; 2.26A {Yersinia pseudotuberculosis}
Probab=35.67 E-value=67 Score=26.82 Aligned_cols=20 Identities=30% Similarity=0.182 Sum_probs=9.4
Q ss_pred ceeeEEEEEEeC-CCcEEEEE
Q 023824 155 FTKYTAGISVTK-PDSCASII 174 (276)
Q Consensus 155 ~~~~~~a~~y~~-~~~~~~~~ 174 (276)
...+++++.|+. |-+++.+.
T Consensus 166 p~a~t~G~~YtPvPLltl~~~ 186 (245)
T 4e1t_A 166 PYAVTAGINYTPVPLLTVGVD 186 (245)
T ss_dssp CEEEEEEEEEEEETTEEEEEE
T ss_pred chhEEEEeEEeecccEEEecc
Confidence 344555555643 33444433
No 24
>2j1n_A Outer membrane protein C; transport protein, beta-barrel, ION transport, osmoporin; HET: D12; 2.0A {Escherichia coli} PDB: 2j4u_P 2zle_D 3nb3_D 4a8d_M 2ixx_A* 2xe1_A* 2xe2_A* 2ixw_A* 2xe5_A* 2xe3_A* 2xg6_A 1osm_A*
Probab=35.53 E-value=2.1e+02 Score=24.46 Aligned_cols=101 Identities=8% Similarity=0.018 Sum_probs=60.9
Q ss_pred eeeEEEEEEeCCCcEEEEEEcC-----------------CCCeEEEEEEEEeCCccceeEEEEEEEEcc----------C
Q 023824 156 TKYTAGISVTKPDSCASIILGD-----------------KGDTIRASYVHHLDNLKKSAAVGEITRRFS----------T 208 (276)
Q Consensus 156 ~~~~~a~~y~~~~~~~~~~~~~-----------------~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~----------~ 208 (276)
..|.+++.|....+.+.+-... ....+.+..-.++.+ +.+++....... .
T Consensus 178 ~~~~~~~~Y~~g~l~~~a~Y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Y~~g~---~~l~a~Y~~~~~~~~~~~~~~~~ 254 (346)
T 2j1n_A 178 DGVGGSITYDYEGFGIGGAISSSKRTDAQNTAAYIGNGDRAETYTGGLKYDANN---IYLAAQYTQTYNATRVGSLGWAN 254 (346)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECCTTTSSTTSBCCCSEEEEEEEEEEEEETT---EEEEEEEEEEESCSBCTTSBBCS
T ss_pred ceEEEEEEEEeCCEEEEEEEEEecCcccccccccccccccceEEEEEEEEeeCC---EEEEEEEeeeEeccccCccccce
Confidence 3588888888877777654321 001222333334543 266666554321 1
Q ss_pred CccEEEEEEEEeeCCCCeEEEE-----EcC-------Cc---eeEEEEEEEecCCeEEEEEEEeec
Q 023824 209 NENTFTVGGSYAVDHLTVVKAK-----LNN-------HG---KLGALLQHEVIPKSLLTISSEVDT 259 (276)
Q Consensus 209 ~~~~~~vG~~~~ld~~~~~Kak-----v~s-------~g---~v~~~~~~~l~~~~~l~ls~~~d~ 259 (276)
+...+.++++|++.+...+.+- .+. .. .+.+.+.+.|++++.+-+......
T Consensus 255 ~~~~~~~~a~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~lg~~Y~lSKrt~lY~~~~~~~ 320 (346)
T 2j1n_A 255 KAQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGRGYDDEDILKYVDVGATYYFNKNMSTYVDYKINL 320 (346)
T ss_dssp EEEEEEEEEEECCTTSEEEEEEEEEEEEESCSTTCCSEEEEEEEEEEEEEESSSSEEEEEEEEEEC
T ss_pred EEEEEEEEEEEEEecCeEEEEEEEEEeccccccccCCcceEEEEEEEEEEEecCCeEEEEEEEEEe
Confidence 2456889999999776666542 211 12 578889999999988877776544
No 25
>4e1s_A Intimin; outer membrane beta barrel, adhesin; HET: OLC OLB; 1.85A {Escherichia coli}
Probab=34.33 E-value=91 Score=25.97 Aligned_cols=82 Identities=16% Similarity=0.160 Sum_probs=0.0
Q ss_pred ccccCCceEEEEEEecC--CCceeEEEE-EcccceeEEEEEecCCCCe-EEEEEEe-ccCcceeeeEEEEEcCCCcceee
Q 023824 84 TEILPSTKAIASLKVPD--YNSGKLEVQ-YFHDHATFTSAIALNQSPC-IDVTATI-GTPSIAFGAEAGYDTTSGNFTKY 158 (276)
Q Consensus 84 ~~~~~Glk~~~~~~~p~--~~~~k~~~~-y~~~~~~~~~~~~l~~~p~-~~~s~~~-~~~~~~lG~e~~yd~~~~~~~~~ 158 (276)
+..+.|..+.+...+|. .-.+++..+ |.++.+.+--.-....+|. +.....+ .+|-+.++++-.--.....-+.+
T Consensus 117 ERpa~GyDi~~~~~lP~~p~lg~~l~yeqy~Gd~V~lf~~~~~q~np~a~t~G~~YtPvPlltl~~~~~~g~~~~~dt~~ 196 (242)
T 4e1s_A 117 ERPANGFDIRFNGYLPSYPALGAKLIYEQYYGDNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLY 196 (242)
T ss_dssp EEECCEEEEEEEEEETTEEEEEEEEEEEEECSSSBCSSCSSSCBSSCEEEEEEEEEEEETTEEEEEEEEEEGGGEEEEEE
T ss_pred hccCCceeEEEEEECCCChhccceEEEEEEccccceecCCCccccCchhEEEEeEEeecccEEEecccccccCCCcCceE
Q ss_pred EEEEEEe
Q 023824 159 TAGISVT 165 (276)
Q Consensus 159 ~~a~~y~ 165 (276)
.+.+.|+
T Consensus 197 ~l~lnY~ 203 (242)
T 4e1s_A 197 SMQFRYQ 203 (242)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
No 26
>3qq2_A BRKA autotransporter; beta barrel, transmembrane, membrane protein-protein transpo complex; 3.00A {Bordetella pertussis}
Probab=27.70 E-value=2.5e+02 Score=23.01 Aligned_cols=63 Identities=14% Similarity=-0.013 Sum_probs=37.7
Q ss_pred eeEEEEEEEEccC-----CccEEEEEEEEeeCCCCe--E-----EEEE-cCCceeEEEEEEEecCCeEEEEEEEee
Q 023824 196 SAAVGEITRRFST-----NENTFTVGGSYAVDHLTV--V-----KAKL-NNHGKLGALLQHEVIPKSLLTISSEVD 258 (276)
Q Consensus 196 ~~~g~e~~~~~~~-----~~~~~~vG~~~~ld~~~~--~-----Kakv-~s~g~v~~~~~~~l~~~~~l~ls~~~d 258 (276)
..+|+++.+.+.. -.+.+.++..|.+.+... + +... .+.+.+++.++.++.+++++.+..+..
T Consensus 190 ~~lG~r~~~~~~~~~g~~~~p~~~~~~~h~f~~~~~~~~~g~~~~~~~~~~~~~~g~G~~~~~~~~~sl~~~~~~~ 265 (284)
T 3qq2_A 190 GRLGLRFGRRIALAGGNIVQPYARLGWTQEFKSTGDVRTNGIGHAGAGRHGRVELGAGVDAALGKGHNLYASYEYA 265 (284)
T ss_dssp EEEEEEEEECEECSSSCEEEEEEEEEEEEEEEC-----------------CEEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred EEEEEEEEEEEEcCCCCEEEEEEEEEEEEEcCCCCeEEECCceeeccCCCCEEEEeeEEEEEECCCEEEEEEEEEc
Confidence 5778877776542 246778888888743221 1 2222 234568899999999987766655443
No 27
>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB: 3por_A*
Probab=24.99 E-value=3.1e+02 Score=23.01 Aligned_cols=24 Identities=13% Similarity=0.286 Sum_probs=16.9
Q ss_pred CccEEEEEEEEeeCCCCeEEEEEc
Q 023824 209 NENTFTVGGSYAVDHLTVVKAKLN 232 (276)
Q Consensus 209 ~~~~~~vG~~~~ld~~~~~Kakv~ 232 (276)
....+.||+.|.|.+++.+-+-+.
T Consensus 259 ~a~~~~lg~~Y~Ls~~~~lya~y~ 282 (301)
T 2por_A 259 DVTYYGLGASYDLGGGASIVGGIA 282 (301)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEE
T ss_pred cccEEEEEEEEcCCCCeEEEEEEE
Confidence 345778888888877777776553
No 28
>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii}
Probab=24.69 E-value=3.6e+02 Score=23.74 Aligned_cols=23 Identities=9% Similarity=0.079 Sum_probs=13.7
Q ss_pred ceeEEEEEEEecCCeEEEEEEEe
Q 023824 235 GKLGALLQHEVIPKSLLTISSEV 257 (276)
Q Consensus 235 g~v~~~~~~~l~~~~~l~ls~~~ 257 (276)
..+++....++.+++.+.++.+.
T Consensus 378 ~~~s~G~gy~~~~~~~ld~ay~y 400 (441)
T 3bry_A 378 TSLTGGVSYAIGKNDVIDFALSV 400 (441)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEE
T ss_pred eEEEeeeEEEcCCCeEEEEEEEE
Confidence 34555555566666666666654
No 29
>2j1n_A Outer membrane protein C; transport protein, beta-barrel, ION transport, osmoporin; HET: D12; 2.0A {Escherichia coli} PDB: 2j4u_P 2zle_D 3nb3_D 4a8d_M 2ixx_A* 2xe1_A* 2xe2_A* 2ixw_A* 2xe5_A* 2xe3_A* 2xg6_A 1osm_A*
Probab=21.48 E-value=3.8e+02 Score=22.78 Aligned_cols=73 Identities=12% Similarity=0.087 Sum_probs=40.3
Q ss_pred eeeEEEEEEeCCCcEEEEEEcC--------------CCCeEEEEEEEEeCCccceeEEEEEEEEcc-------CC---cc
Q 023824 156 TKYTAGISVTKPDSCASIILGD--------------KGDTIRASYVHHLDNLKKSAAVGEITRRFS-------TN---EN 211 (276)
Q Consensus 156 ~~~~~a~~y~~~~~~~~~~~~~--------------~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~-------~~---~~ 211 (276)
..|.+++.|.-..+.+.+.... +...+.+..-.++.+.+ .+.+...+... .. ..
T Consensus 219 ~~~~~g~~Y~~g~~~l~a~Y~~~~~~~~~~~~~~~~~~~~~~~~a~Y~~~~~~--~~~~~y~~~~~~~~~~~~~~~~~~~ 296 (346)
T 2j1n_A 219 ETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGL--RPSLAYLQSKGKNLGRGYDDEDILK 296 (346)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEESCSBCTTSBBCSEEEEEEEEEEECCTTSE--EEEEEEEEEEEESCSTTCCSEEEEE
T ss_pred eEEEEEEEEeeCCEEEEEEEeeeEeccccCccccceEEEEEEEEEEEEEecCe--EEEEEEEEEeccccccccCCcceEE
Confidence 4566666776666665554321 01233344445666654 44444433211 01 23
Q ss_pred EEEEEEEEeeCCCCeEEEE
Q 023824 212 TFTVGGSYAVDHLTVVKAK 230 (276)
Q Consensus 212 ~~~vG~~~~ld~~~~~Kak 230 (276)
.+++|+.|.|.+++.+=+.
T Consensus 297 ~~~lg~~Y~lSKrt~lY~~ 315 (346)
T 2j1n_A 297 YVDVGATYYFNKNMSTYVD 315 (346)
T ss_dssp EEEEEEEEESSSSEEEEEE
T ss_pred EEEEEEEEEecCCeEEEEE
Confidence 7899999999888776554
No 30
>2wjr_A Probable N-acetylneuraminic acid outer membrane C protein NANC; cell membrane, ION transport, transmembrane, porin, membrane transport; HET: EPE; 1.80A {Escherichia coli} PDB: 2wjq_A*
Probab=21.03 E-value=3.3e+02 Score=21.92 Aligned_cols=18 Identities=17% Similarity=-0.191 Sum_probs=8.9
Q ss_pred EEEEEeCCccceeEEEEEEE
Q 023824 185 SYVHHLDNLKKSAAVGEITR 204 (276)
Q Consensus 185 Sy~~kv~~~~~~~~g~e~~~ 204 (276)
-+-|+....+ =+.+|+.+
T Consensus 20 ~~~h~f~nG~--g~s~E~k~ 37 (214)
T 2wjr_A 20 KVSEGWQNGW--WASMESNT 37 (214)
T ss_dssp EEEEECTTSE--EEEEEEEE
T ss_pred EEEEEccCCc--eEEEEEEE
Confidence 3446666542 34555544
Done!