Query 023825
Match_columns 276
No_of_seqs 76 out of 78
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 13:25:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023825.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023825hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 61.6 13 0.00043 28.1 4.8 22 86-107 16-37 (79)
2 3udc_A Small-conductance mecha 53.5 1.1E+02 0.0039 26.6 11.5 30 148-177 15-44 (285)
3 2rdd_B UPF0092 membrane protei 46.7 20 0.0007 23.2 3.4 15 100-114 19-33 (37)
4 3sn6_R Lysozyme, beta-2 adrene 45.4 1.2E+02 0.0042 27.1 9.4 27 151-177 421-447 (514)
5 2rdd_B UPF0092 membrane protei 45.2 24 0.00082 22.9 3.5 24 93-116 9-32 (37)
6 3b9w_A Ammonium transporter fa 45.1 2.1E+02 0.0072 27.3 12.2 80 146-225 255-346 (407)
7 1rh5_B Preprotein translocase 44.9 70 0.0024 24.0 6.6 56 101-182 15-70 (74)
8 2es4_D Lipase chaperone; prote 40.0 9.5 0.00032 35.4 1.3 17 66-82 54-70 (332)
9 2vv5_A MSCS, small-conductance 39.5 1.3E+02 0.0044 26.3 8.5 52 153-205 30-82 (286)
10 2ks1_B Epidermal growth factor 39.4 11 0.00037 26.0 1.2 22 90-111 20-41 (44)
11 2l2t_A Receptor tyrosine-prote 29.8 18 0.00062 25.0 1.1 16 96-111 25-40 (44)
12 3h1n_A Probable glutathione S- 29.3 13 0.00046 30.7 0.4 33 24-56 15-49 (252)
13 3mp7_B Preprotein translocase 26.9 1.8E+02 0.0061 21.0 6.0 48 101-174 11-58 (61)
14 2k1k_A Ephrin type-A receptor 22.2 50 0.0017 21.8 2.1 12 90-101 23-34 (38)
15 2k9j_B Integrin beta-3; transm 22.1 1.3E+02 0.0043 20.3 4.1 21 87-107 16-36 (43)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=61.60 E-value=13 Score=28.11 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 023825 86 QVATSVLLTGAISVFLFRALRR 107 (276)
Q Consensus 86 Q~a~sv~ltg~i~vfl~R~~rr 107 (276)
=+..+++++|++.+++.|.+..
T Consensus 16 gvi~gilliGllllliwk~~~~ 37 (79)
T 2knc_B 16 SVMGAILLIGLAALLIWKLLIT 37 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788899999999887743
No 2
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=53.48 E-value=1.1e+02 Score=26.59 Aligned_cols=30 Identities=30% Similarity=0.217 Sum_probs=22.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023825 148 PSPVQALLGGLTAGVIAIILYKFTTTIEAA 177 (276)
Q Consensus 148 ~tPLq~L~GAliAgvlA~llY~LT~sI~as 177 (276)
..-++.+...+.+.+++++.+.+...+...
T Consensus 15 ~~~~~~~~~il~~lii~~i~~~i~~~l~~~ 44 (285)
T 3udc_A 15 IKAVKFLLDVLKILIIAFIGIKFADFLIYR 44 (285)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778888888888888877766654
No 3
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=46.69 E-value=20 Score=23.23 Aligned_cols=15 Identities=27% Similarity=0.589 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhhh
Q 023825 100 FLFRALRRRAKRAKE 114 (276)
Q Consensus 100 fl~R~~rrRa~rAke 114 (276)
|+.|-=|||.|+.+|
T Consensus 19 l~iRPQ~Kr~K~~~~ 33 (37)
T 2rdd_B 19 MILRPQQKRTKEHKK 33 (37)
T ss_dssp HTHHHHHHHHHHHTT
T ss_pred HHhhhHHHHHHHHHH
Confidence 345555566555554
No 4
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=45.41 E-value=1.2e+02 Score=27.08 Aligned_cols=27 Identities=4% Similarity=-0.009 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023825 151 VQALLGGLTAGVIAIILYKFTTTIEAA 177 (276)
Q Consensus 151 Lq~L~GAliAgvlA~llY~LT~sI~as 177 (276)
.+.++--++.++++|+=|.+..-+...
T Consensus 421 ~~~l~~iv~~F~lcwlP~~i~~~~~~~ 447 (514)
T 3sn6_R 421 LKTLGIIMGTFTLCWLPFFIVNIVHVI 447 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667788888887776655443
No 5
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=45.18 E-value=24 Score=22.91 Aligned_cols=24 Identities=42% Similarity=0.447 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 023825 93 LTGAISVFLFRALRRRAKRAKELK 116 (276)
Q Consensus 93 ltg~i~vfl~R~~rrRa~rAke~r 116 (276)
+...+++|.|=.+|..-||+||.+
T Consensus 9 ~v~~~~ifYFl~iRPQ~Kr~K~~~ 32 (37)
T 2rdd_B 9 LVVFGLIFYFMILRPQQKRTKEHK 32 (37)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 444557788999999999999865
No 6
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=45.15 E-value=2.1e+02 Score=27.26 Aligned_cols=80 Identities=15% Similarity=0.121 Sum_probs=47.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHH-HHHHhccCCCCCchHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Q 023825 146 GPPSPVQALLGGLTAGVIAIILYKFTT-TIEAALNRQTISDNFSVRQITITIRTIVNGLC-----------YLATFVFGI 213 (276)
Q Consensus 146 ~~~tPLq~L~GAliAgvlA~llY~LT~-sI~asF~~p~~SdN~~A~~Ia~aVRTLVvGL~-----------yLATFiFa~ 213 (276)
.-++|+.+++=+++||++++..+.+.+ .+...+.=-..-|-+.+.-++-.+=++..|++ -+++++|++
T Consensus 255 ~~v~p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~~~~Ql~g~~~~~~~s~ 334 (407)
T 3b9w_A 255 NIVGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHGLPGLLGGFSAILIVPGIAVAQLTGIGITLALAL 334 (407)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTTHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecchHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 458899988888888888888776433 34443432222344555556666666666654 244556666
Q ss_pred HHHHHHHHHHHH
Q 023825 214 NSVGLFLYSGQL 225 (276)
Q Consensus 214 ~alGL~LLaIQL 225 (276)
+.--++++-+.+
T Consensus 335 v~~~i~~~il~~ 346 (407)
T 3b9w_A 335 IGGVIAGALIKL 346 (407)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 555455554444
No 7
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=44.90 E-value=70 Score=24.04 Aligned_cols=56 Identities=32% Similarity=0.267 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCccHHHHHHHhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 023825 101 LFRALRRRAKRAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYKFTTTIEAALNR 180 (276)
Q Consensus 101 l~R~~rrRa~rAke~r~rs~g~~k~~~ee~~e~lka~~~~~i~~q~~~tPLq~L~GAliAgvlA~llY~LT~sI~asF~~ 180 (276)
|++.-+|=.++++ |+..||=..-.|+ +.+|-++-|++||+.+.+..-|-....+
T Consensus 15 f~kd~~rvlk~~~----------KPdr~EF~~iak~----------------~~iG~~imG~IGfiIkli~ipIn~ii~~ 68 (74)
T 1rh5_B 15 FIEECRRVWLVLK----------KPTKDEYLAVAKV----------------TALGISLLGIIGYIIHVPATYIKGILKP 68 (74)
T ss_dssp HHHHHHHHHHSEE----------CCCHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhc----------CCCHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 3445555555555 6777776665555 6799999999999999998888777655
Q ss_pred CC
Q 023825 181 QT 182 (276)
Q Consensus 181 p~ 182 (276)
|+
T Consensus 69 ~~ 70 (74)
T 1rh5_B 69 PT 70 (74)
T ss_dssp --
T ss_pred CC
Confidence 54
No 8
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=40.02 E-value=9.5 Score=35.40 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=8.3
Q ss_pred CCccccCCCcccCCCCC
Q 023825 66 EGPVELPQSIFATTDEP 82 (276)
Q Consensus 66 ~gp~el~~~~~~~~d~~ 82 (276)
.++-.||+|+=++.-|.
T Consensus 54 ~~~~~lP~Sl~gTevd~ 70 (332)
T 2es4_D 54 PLPAALPGALAGSHAPR 70 (332)
T ss_dssp CCSCSSCTTTTTCCCCC
T ss_pred cccccCCccccCCCCCC
Confidence 33444666655554333
No 9
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=39.49 E-value=1.3e+02 Score=26.33 Aligned_cols=52 Identities=8% Similarity=0.160 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCCchHHHHHHHHHHHHHHHHHHH
Q 023825 153 ALLGGLTAGVIAIILYKFTTTIEAA-LNRQTISDNFSVRQITITIRTIVNGLCY 205 (276)
Q Consensus 153 ~L~GAliAgvlA~llY~LT~sI~as-F~~p~~SdN~~A~~Ia~aVRTLVvGL~y 205 (276)
-++.+++-.+++|.++++...+... +.+.. -+.....-+...+|.++..++.
T Consensus 30 ~i~~~~~i~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~i~~i~~ 82 (286)
T 2vv5_A 30 NIVAALAIIIVGLIIARMISNAVNRLMISRK-IDATVADFLSALVRYGIIAFTL 82 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHH
Confidence 3556666667777777766655443 33322 2233334455555555544433
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=39.44 E-value=11 Score=26.01 Aligned_cols=22 Identities=23% Similarity=0.171 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023825 90 SVLLTGAISVFLFRALRRRAKR 111 (276)
Q Consensus 90 sv~ltg~i~vfl~R~~rrRa~r 111 (276)
||++..+|...++=.+|||-++
T Consensus 20 Gv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 20 ALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHhhhhHhh
Confidence 4444444444444556665544
No 11
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=29.82 E-value=18 Score=25.02 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 023825 96 AISVFLFRALRRRAKR 111 (276)
Q Consensus 96 ~i~vfl~R~~rrRa~r 111 (276)
+|....+=.+|||-++
T Consensus 25 ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHhhhhhhh
Confidence 3333333445555443
No 12
>3h1n_A Probable glutathione S-transferase; APC84167, bordetella bronchisepti structural genomics, PSI-2, protein structure initiative; 1.83A {Bordetella bronchiseptica RB50}
Probab=29.34 E-value=13 Score=30.67 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=23.7
Q ss_pred CCccCCCccccccc--CCCCCcchhhhhhccCCCc
Q 023825 24 NFLQKPTISLSAFP--RRRPLIEPYCLAQAQEPTT 56 (276)
Q Consensus 24 ~~~~~~~~~~s~~~--~~~~~~~~~~~~~~~~~~~ 56 (276)
+..+.+++++.-+| +.|-....|+|..+.++-.
T Consensus 15 ~~~~~m~~~L~y~~g~~~~a~~vr~~L~~~gi~ye 49 (252)
T 3h1n_A 15 LYFQGMAYDLWYWDGIPGRGEFVRLALEAGKIPYR 49 (252)
T ss_dssp CGGGGGCEEEECCSSSCTTHHHHHHHHHHHTCCEE
T ss_pred eeecCCceEEEeCCCCCcchHHHHHHHHhCCCCce
Confidence 45777778888887 5555566798888887644
No 13
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=26.92 E-value=1.8e+02 Score=20.98 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCccHHHHHHHhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 023825 101 LFRALRRRAKRAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYKFTTTI 174 (276)
Q Consensus 101 l~R~~rrRa~rAke~r~rs~g~~k~~~ee~~e~lka~~~~~i~~q~~~tPLq~L~GAliAgvlA~llY~LT~sI 174 (276)
|+|.-+|=.|+++ |+..||=..-.|+ +.+|-++-|++||+.+.+..-+
T Consensus 11 f~kd~~rvlk~~~----------KPd~~Ef~~iak~----------------~~iG~~i~G~iGf~Ikli~~~l 58 (61)
T 3mp7_B 11 FWKESRRAFLVTK----------KPNWATYKRAAKI----------------TGLGIILIGLIGMLIRIVGILI 58 (61)
T ss_dssp HHHHHTHHHHHSC----------CCCTTHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc----------CCCHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555 6777776665555 5689999999999888766543
No 14
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=22.19 E-value=50 Score=21.85 Aligned_cols=12 Identities=33% Similarity=0.229 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 023825 90 SVLLTGAISVFL 101 (276)
Q Consensus 90 sv~ltg~i~vfl 101 (276)
+|+++.++.+|+
T Consensus 23 gv~li~~l~~~~ 34 (38)
T 2k1k_A 23 GAALLLGILVFR 34 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 15
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=22.11 E-value=1.3e+02 Score=20.31 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023825 87 VATSVLLTGAISVFLFRALRR 107 (276)
Q Consensus 87 ~a~sv~ltg~i~vfl~R~~rr 107 (276)
+..++++.|.+...+.|.+-.
T Consensus 16 vi~~ivliGl~lLliwk~~~~ 36 (43)
T 2k9j_B 16 VMGAILLIGLAALLIWKLLIT 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345678889988888888743
Done!