Query 023826
Match_columns 276
No_of_seqs 166 out of 1176
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:56:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07419 1,4-dihydroxy-2-napht 100.0 2.8E-50 6E-55 374.5 28.6 248 10-267 41-304 (304)
2 TIGR02235 menA_cyano-plnt 1,4- 100.0 3.3E-49 7.2E-54 364.4 26.7 241 10-260 28-284 (285)
3 PLN02922 prenyltransferase 100.0 5.6E-48 1.2E-52 360.7 27.5 253 10-262 44-314 (315)
4 COG1575 MenA 1,4-dihydroxy-2-n 100.0 2.4E-46 5.2E-51 344.0 27.5 246 8-264 35-302 (303)
5 PRK13387 1,4-dihydroxy-2-napht 100.0 3.3E-46 7.3E-51 349.1 27.7 244 10-263 32-315 (317)
6 TIGR00751 menA 1,4-dihydroxy-2 100.0 1.7E-45 3.6E-50 339.7 24.9 239 9-258 20-284 (284)
7 PRK05951 ubiA prenyltransferas 100.0 2E-38 4.4E-43 294.0 27.2 239 10-264 33-292 (296)
8 PRK06080 1,4-dihydroxy-2-napht 100.0 6.4E-37 1.4E-41 282.7 27.5 242 10-262 31-292 (293)
9 TIGR01476 chlor_syn_BchG bacte 100.0 4.5E-29 9.7E-34 229.7 24.8 226 14-255 34-277 (283)
10 TIGR02056 ChlG chlorophyll syn 100.0 6.7E-29 1.5E-33 231.4 23.6 196 46-254 98-298 (306)
11 PRK13105 ubiA prenyltransferas 100.0 1.2E-28 2.6E-33 227.2 23.2 196 46-259 77-277 (282)
12 PRK07566 bacteriochlorophyll/c 99.9 2.4E-24 5.3E-29 201.4 22.6 199 46-262 109-310 (314)
13 PLN00012 chlorophyll synthetas 99.9 3.2E-23 7E-28 198.0 25.4 198 46-255 167-368 (375)
14 PRK12872 ubiA prenyltransferas 99.9 3.1E-23 6.7E-28 190.5 22.2 196 47-253 77-275 (285)
15 KOG4581 Predicted membrane pro 99.9 4.2E-23 9.2E-28 182.9 9.0 216 40-272 139-358 (359)
16 PRK12887 ubiA tocopherol phyty 99.9 1.9E-21 4.1E-26 181.6 19.9 157 46-208 97-254 (308)
17 PRK12392 bacteriochlorophyll c 99.9 9.5E-21 2.1E-25 178.4 21.4 174 46-229 94-273 (331)
18 PRK13591 ubiA prenyltransferas 99.9 9.9E-21 2.1E-25 175.8 18.1 162 50-229 98-271 (307)
19 PRK12875 ubiA prenyltransferas 99.8 2.8E-19 6.2E-24 165.1 22.1 188 47-261 87-277 (282)
20 PRK12847 ubiA 4-hydroxybenzoat 99.8 2.3E-18 5.1E-23 158.8 22.1 226 14-262 42-284 (285)
21 PRK12884 ubiA prenyltransferas 99.8 6.3E-18 1.4E-22 155.1 23.0 188 46-257 81-270 (279)
22 PF01040 UbiA: UbiA prenyltran 99.8 1.7E-18 3.6E-23 154.8 16.3 105 70-183 88-193 (257)
23 TIGR01475 ubiA_other putative 99.8 5.9E-17 1.3E-21 149.2 21.2 231 12-264 31-281 (282)
24 PRK12871 ubiA prenyltransferas 99.8 2.3E-16 5E-21 146.8 23.5 198 46-262 96-294 (297)
25 PRK12888 ubiA prenyltransferas 99.7 3.4E-16 7.4E-21 144.8 21.4 232 11-264 33-282 (284)
26 PRK09573 (S)-2,3-di-O-geranylg 99.7 4.8E-16 1E-20 143.0 22.3 197 13-228 33-247 (279)
27 PRK12869 ubiA protoheme IX far 99.7 1.1E-15 2.4E-20 140.8 24.6 134 46-194 82-217 (279)
28 PRK12883 ubiA prenyltransferas 99.7 1.4E-15 3E-20 139.7 23.8 126 46-189 81-207 (277)
29 TIGR01473 cyoE_ctaB protoheme 99.7 2.5E-15 5.4E-20 138.3 24.0 166 14-193 32-215 (280)
30 PRK12878 ubiA 4-hydroxybenzoat 99.7 5.3E-15 1.2E-19 138.6 21.6 193 46-263 118-312 (314)
31 PRK12848 ubiA 4-hydroxybenzoat 99.7 7.9E-15 1.7E-19 135.3 21.4 194 46-262 88-281 (282)
32 PRK12870 ubiA 4-hydroxybenzoat 99.7 1.3E-14 2.8E-19 134.6 21.4 198 46-264 92-289 (290)
33 PLN02878 homogentisate phytylt 99.7 2E-14 4.4E-19 132.0 21.8 150 47-201 68-221 (280)
34 PRK12886 ubiA prenyltransferas 99.7 2.6E-14 5.6E-19 132.7 22.8 126 70-206 107-232 (291)
35 PRK13595 ubiA prenyltransferas 99.7 2.2E-14 4.8E-19 132.8 22.0 191 46-259 91-282 (292)
36 TIGR01474 ubiA_proteo 4-hydrox 99.7 1.7E-14 3.7E-19 133.1 21.3 193 46-262 86-279 (281)
37 PRK12882 ubiA prenyltransferas 99.6 1.9E-14 4.2E-19 132.1 20.3 136 46-197 82-218 (276)
38 PRK12874 ubiA prenyltransferas 99.6 1.4E-13 3.1E-18 127.7 24.0 229 13-264 43-289 (291)
39 PRK04375 protoheme IX farnesyl 99.6 2.7E-13 5.9E-18 126.0 24.0 130 46-190 90-221 (296)
40 PRK13106 ubiA prenyltransferas 99.4 2.2E-11 4.9E-16 113.6 21.2 181 72-266 116-298 (300)
41 PRK13362 protoheme IX farnesyl 99.3 7.5E-10 1.6E-14 103.6 23.7 125 46-185 93-219 (306)
42 PLN02809 4-hydroxybenzoate non 99.3 3.7E-10 8.1E-15 104.9 20.6 194 46-265 91-288 (289)
43 COG0382 UbiA 4-hydroxybenzoate 99.3 4.7E-10 1E-14 103.8 20.5 144 46-206 93-237 (289)
44 PRK12876 ubiA prenyltransferas 99.2 2.3E-09 5E-14 100.0 21.2 116 70-196 112-232 (300)
45 PRK12895 ubiA prenyltransferas 99.2 2.4E-09 5.2E-14 99.4 20.1 200 46-266 83-283 (286)
46 PRK12873 ubiA prenyltransferas 99.0 1.2E-07 2.5E-12 88.5 20.9 140 46-199 90-232 (294)
47 PLN02776 prenyltransferase 98.7 5.6E-06 1.2E-10 78.7 22.8 132 46-192 75-209 (341)
48 PRK13592 ubiA prenyltransferas 98.4 2.5E-05 5.5E-10 72.8 18.9 103 83-194 117-231 (299)
49 COG0109 CyoE Polyprenyltransfe 97.3 0.0096 2.1E-07 55.8 14.5 170 46-229 98-269 (304)
50 PRK12324 phosphoribose diphosp 96.5 0.23 4.9E-06 46.6 17.2 112 46-173 92-204 (295)
51 PRK08238 hypothetical protein; 95.6 0.92 2E-05 45.3 17.5 104 47-169 273-377 (479)
52 PRK12884 ubiA prenyltransferas 94.0 0.87 1.9E-05 41.7 11.6 41 138-179 39-79 (279)
53 COG0382 UbiA 4-hydroxybenzoate 93.9 2.8 6.1E-05 38.7 14.8 43 136-178 47-90 (289)
54 PF01040 UbiA: UbiA prenyltran 92.6 1.9 4.1E-05 38.1 11.2 36 145-180 32-68 (257)
55 PRK12873 ubiA prenyltransferas 92.4 1.9 4.1E-05 40.4 11.3 43 138-180 46-89 (294)
56 PRK12324 phosphoribose diphosp 92.3 1.9 4.1E-05 40.4 11.2 53 140-192 50-106 (295)
57 TIGR01475 ubiA_other putative 91.8 4.9 0.00011 37.0 13.2 49 138-186 38-90 (282)
58 TIGR02056 ChlG chlorophyll syn 91.7 1.8 3.9E-05 40.5 10.4 48 146-194 64-114 (306)
59 KOG1381 Para-hydroxybenzoate-p 91.6 2.4 5.1E-05 39.7 10.6 192 53-265 152-346 (353)
60 PRK12882 ubiA prenyltransferas 91.6 3.9 8.5E-05 37.4 12.4 53 139-192 41-96 (276)
61 PRK12869 ubiA protoheme IX far 91.2 7.2 0.00016 35.9 13.7 56 138-193 38-97 (279)
62 PRK12895 ubiA prenyltransferas 90.2 8.8 0.00019 35.8 13.4 54 138-191 39-96 (286)
63 PRK04375 protoheme IX farnesyl 90.1 9.2 0.0002 35.5 13.5 54 140-193 48-105 (296)
64 PLN02809 4-hydroxybenzoate non 90.1 5.8 0.00013 36.9 12.1 47 139-185 48-95 (289)
65 PRK12847 ubiA 4-hydroxybenzoat 89.9 7.6 0.00016 35.8 12.7 42 139-180 48-90 (285)
66 PRK13362 protoheme IX farnesyl 89.9 13 0.00029 34.9 14.4 50 143-192 54-107 (306)
67 TIGR01474 ubiA_proteo 4-hydrox 89.4 9.6 0.00021 35.1 12.9 41 140-180 44-85 (281)
68 PRK09573 (S)-2,3-di-O-geranylg 89.3 9.3 0.0002 35.1 12.7 56 138-193 39-96 (279)
69 PRK12883 ubiA prenyltransferas 88.0 6.7 0.00014 35.9 10.9 45 146-191 47-94 (277)
70 PRK12875 ubiA prenyltransferas 88.0 6.8 0.00015 36.4 10.9 20 153-172 62-81 (282)
71 PRK12848 ubiA 4-hydroxybenzoat 88.0 22 0.00047 32.8 14.8 50 143-192 49-102 (282)
72 PRK12876 ubiA prenyltransferas 87.7 15 0.00033 34.6 13.1 42 138-179 49-91 (300)
73 PRK12886 ubiA prenyltransferas 87.0 22 0.00047 33.1 13.7 42 138-179 44-86 (291)
74 PRK12872 ubiA prenyltransferas 86.7 4.3 9.4E-05 37.1 8.9 31 139-169 39-69 (285)
75 PRK13592 ubiA prenyltransferas 86.0 10 0.00022 35.8 10.9 59 135-193 45-105 (299)
76 PRK12887 ubiA tocopherol phyty 85.7 9.7 0.00021 35.8 10.7 34 153-187 70-106 (308)
77 PLN02776 prenyltransferase 85.6 17 0.00036 34.9 12.4 53 138-190 31-87 (341)
78 PRK08238 hypothetical protein; 85.5 14 0.0003 37.1 12.2 55 138-192 228-286 (479)
79 PRK12888 ubiA prenyltransferas 85.4 31 0.00067 32.0 14.3 32 138-169 41-72 (284)
80 PRK12870 ubiA 4-hydroxybenzoat 85.4 8.4 0.00018 35.8 10.1 40 140-179 50-90 (290)
81 PRK13106 ubiA prenyltransferas 85.2 31 0.00067 32.4 13.8 31 138-168 51-81 (300)
82 TIGR01473 cyoE_ctaB protoheme 85.0 31 0.00067 31.6 14.7 54 139-192 38-95 (280)
83 PRK13105 ubiA prenyltransferas 85.0 12 0.00027 34.7 11.0 40 135-174 32-72 (282)
84 PRK12392 bacteriochlorophyll c 84.7 13 0.00028 35.4 11.2 46 150-196 64-112 (331)
85 PRK13591 ubiA prenyltransferas 84.1 12 0.00027 35.3 10.6 47 113-169 45-91 (307)
86 PLN00012 chlorophyll synthetas 84.1 13 0.00029 36.0 11.1 45 147-192 134-181 (375)
87 PRK13595 ubiA prenyltransferas 84.0 24 0.00053 33.1 12.5 21 151-171 62-82 (292)
88 PRK12878 ubiA 4-hydroxybenzoat 84.0 28 0.00061 32.7 13.1 31 139-169 75-105 (314)
89 PRK12871 ubiA prenyltransferas 82.5 22 0.00047 33.3 11.6 49 147-195 52-113 (297)
90 TIGR01476 chlor_syn_BchG bacte 77.5 11 0.00025 34.5 7.9 46 147-192 49-96 (283)
91 PRK07566 bacteriochlorophyll/c 77.1 12 0.00025 35.2 8.0 47 147-193 76-124 (314)
92 PRK05951 ubiA prenyltransferas 73.6 38 0.00083 31.4 10.4 59 134-192 37-103 (296)
93 PRK12874 ubiA prenyltransferas 73.2 79 0.0017 29.4 14.2 30 140-169 51-80 (291)
94 PRK13387 1,4-dihydroxy-2-napht 57.1 1.5E+02 0.0034 27.8 11.1 68 134-201 36-110 (317)
95 COG0109 CyoE Polyprenyltransfe 52.9 2.1E+02 0.0045 27.2 11.8 88 134-226 49-141 (304)
96 PRK06080 1,4-dihydroxy-2-napht 50.5 97 0.0021 28.4 8.5 51 142-192 44-100 (293)
97 TIGR02235 menA_cyano-plnt 1,4- 49.0 2.2E+02 0.0048 26.3 10.7 33 134-166 32-67 (285)
98 PLN02878 homogentisate phytylt 46.3 1.2E+02 0.0026 28.4 8.2 33 146-179 31-65 (280)
99 TIGR00751 menA 1,4-dihydroxy-2 42.8 2.8E+02 0.006 25.7 11.2 30 134-163 25-55 (284)
100 PRK07419 1,4-dihydroxy-2-napht 36.9 3.4E+02 0.0074 25.4 9.9 33 134-166 45-80 (304)
101 cd00867 Trans_IPPS Trans-Isopr 33.2 17 0.00036 31.9 0.4 27 151-177 161-197 (236)
102 PHA02680 ORF090 IMV phosphoryl 28.2 1.6E+02 0.0035 22.9 5.0 34 20-61 24-57 (91)
103 PRK10299 PhoPQ regulatory prot 26.6 52 0.0011 22.5 1.8 30 143-172 12-41 (47)
104 PF12046 DUF3529: Protein of u 25.8 1.4E+02 0.003 26.0 4.8 68 153-221 53-123 (173)
105 KOG4112 Signal peptidase subun 24.4 3.1E+02 0.0066 21.7 6.0 30 70-100 47-76 (101)
106 TIGR01190 ccmB heme exporter p 22.6 4.3E+02 0.0093 23.5 7.5 93 97-189 8-102 (211)
107 KOG3142 Prenylated rab accepto 22.4 5.4E+02 0.012 22.7 9.0 71 50-124 69-142 (187)
108 PF07895 DUF1673: Protein of u 22.0 5.5E+02 0.012 22.6 8.1 31 200-230 75-106 (205)
No 1
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=100.00 E-value=2.8e-50 Score=374.49 Aligned_cols=248 Identities=36% Similarity=0.569 Sum_probs=228.1
Q ss_pred hhcccCchhhHHhhhhhhhcc---------------cCCcceeeeecccCCHHHHHHHHHHHHHHHH-HHHHHHHHhhch
Q 023826 10 IYSKVCPRATFLLFCPSVLYS---------------KESHWLVISFVLLGSRTGTLVTAYLLLVLGF-IGLTWASVEAGN 73 (276)
Q Consensus 10 ~~~~~~~~~~~~~f~~~~~~~---------------~~~~~~~~~~n~~g~~~~v~~~~~~~l~~~~-lGl~l~~~~~~g 73 (276)
.++++||.++++++.+.+..+ .|+++++...|.++++|++++.+..|+++++ +|+++ .+.+|
T Consensus 41 ~~~~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L--~~~~g 118 (304)
T PRK07419 41 ETGVFRLDQFITFLLAAILILAWENLSNDVFDADTGIDKNKFHSVVNLTGNKSLVFWLANLFLLLGLLGILAI--ALQSD 118 (304)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCcccccCcHHHHHHHHHHHHHHHHHHHHHH--HHhhc
Confidence 347899999999999999871 4444455567888899999999999999999 59998 67899
Q ss_pred HHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHH
Q 023826 74 LRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLIL 153 (276)
Q Consensus 74 ~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~~~~il 153 (276)
|+++++|++|++++++||+||+|+||+|+||++++++||++++.|+||+|+++ +++..++.|+|.++.++++|
T Consensus 119 ~~~l~ig~~g~~~~~~YT~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yv~t~~-------~~~~~~~~sl~~gll~~~IL 191 (304)
T PRK07419 119 WTVLGLVLLCCFLGYLYQGPPFRLGYQGLGEPLCFLAFGPLAVAAALYSQTPS-------WSLIPLAASIILGLATSLIL 191 (304)
T ss_pred HHHHHHHHHHHHHhheccCCCcccCCCCchHHHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 88899999999999999999
Q ss_pred HhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhccC
Q 023826 154 FCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKD 233 (276)
Q Consensus 154 l~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ll~~ll~lPla~~~~~~~~~~~~~ 233 (276)
++||+||+|+||++||||+||++|+|+|+++|..+...+|++++..+..|..|+++++ +++++|++.+..|.+++++++
T Consensus 192 ~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g~~p~~~Ll-~ll~lPl~~~~~~~~~~~~~~ 270 (304)
T PRK07419 192 FCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLGFWPWTTLL-SLLSLPFAIKLIRLVRENHDQ 270 (304)
T ss_pred HHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999998876 699999999999999887555
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023826 234 KGKIFMAKYYCVRFHALFGAALVAGLITARILVT 267 (276)
Q Consensus 234 ~~~~~~~~~~t~k~~~l~~~ll~igl~l~~~~~~ 267 (276)
++++.+.+++|++.++++++++++|++++..+||
T Consensus 271 ~~~l~~~l~~t~~~~~l~g~l~~l~~~l~~~~~~ 304 (304)
T PRK07419 271 PEKVSNSKFIAVRFHFWSGLLLSLGLILAYLLPK 304 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 6778889999999999999999999999888654
No 2
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=100.00 E-value=3.3e-49 Score=364.45 Aligned_cols=241 Identities=34% Similarity=0.555 Sum_probs=222.5
Q ss_pred hhcccCchhhHHhhhhhhhcc---------------cCCcceeeeecccCCHHHHHHHHHHHHHHHH-HHHHHHHHhhch
Q 023826 10 IYSKVCPRATFLLFCPSVLYS---------------KESHWLVISFVLLGSRTGTLVTAYLLLVLGF-IGLTWASVEAGN 73 (276)
Q Consensus 10 ~~~~~~~~~~~~~f~~~~~~~---------------~~~~~~~~~~n~~g~~~~v~~~~~~~l~~~~-lGl~l~~~~~~g 73 (276)
+++++||.++++++++++.++ +|+++++..+|.++++++++..+..++++++ +|+++ +..+|
T Consensus 28 ~~~~f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~~~~~~~~~~~v~~~~~~~~~ia~~~g~~L--~~~~~ 105 (285)
T TIGR02235 28 QGGVFHLDRFALFLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVNLTGSRSLVFWLANFFLLIGLVGIAAL--SWRWQ 105 (285)
T ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCCcccccCcHHHHHHHHHHHHHHHHHHHHHH--HHHhh
Confidence 457999999999999998882 4555566677888999999999999999998 59987 67889
Q ss_pred HHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHH
Q 023826 74 LRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLIL 153 (276)
Q Consensus 74 ~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~~~~il 153 (276)
|+++++|++|++++++||+||+|+||+|+||++++++||++++.++||+|+++ +++..++.|+|.++.++++|
T Consensus 106 ~~~l~lg~~g~~~~~~Yt~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yvqt~~-------~~~~~~l~sl~~gl~~~~iL 178 (285)
T TIGR02235 106 ITVLALVGLCCFLGYLYQGPPFRLGYQGLGEPICWLCFGPLAIAAALYAQSQS-------FSLIPWKASILVGLATTLIL 178 (285)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCc-------CcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 88999999999999999999
Q ss_pred HhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhccC
Q 023826 154 FCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKD 233 (276)
Q Consensus 154 l~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ll~~ll~lPla~~~~~~~~~~~~~ 233 (276)
++||+||+|+|+++||||++||+|+|+|+++|..+...+|++++..+..|..||++++ +++++|++.+..|++++++++
T Consensus 179 ~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~~~ll-~ll~lPl~~~~~~~~~~~~~~ 257 (285)
T TIGR02235 179 FCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGFLPWTTLL-ALASIPWAVKLIRLVRQNHNN 257 (285)
T ss_pred HhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999998876 699999999999999876556
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHH
Q 023826 234 KGKIFMAKYYCVRFHALFGAALVAGLI 260 (276)
Q Consensus 234 ~~~~~~~~~~t~k~~~l~~~ll~igl~ 260 (276)
+++..+.+++|++.++++++++++|++
T Consensus 258 ~~~l~~~l~~t~~~~~~~g~l~~~g~~ 284 (285)
T TIGR02235 258 PEQISNCKFIAVRFHFLSGILLTLGLL 284 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888999999999999999999976
No 3
>PLN02922 prenyltransferase
Probab=100.00 E-value=5.6e-48 Score=360.65 Aligned_cols=253 Identities=64% Similarity=1.042 Sum_probs=219.4
Q ss_pred hhcccCchhhHHhhhhhhhcc---------------cCCcceeeeecccCCHHHHHHHHHHHHHHHHHHHHHHHHhhchH
Q 023826 10 IYSKVCPRATFLLFCPSVLYS---------------KESHWLVISFVLLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNL 74 (276)
Q Consensus 10 ~~~~~~~~~~~~~f~~~~~~~---------------~~~~~~~~~~n~~g~~~~v~~~~~~~l~~~~lGl~l~~~~~~g~ 74 (276)
.++++||.++++++++++.++ .|++..+..+|.++++|+++++++.|++++++|+++....++||
T Consensus 44 ~~g~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~~~~s~~~v~~~~~~~~~la~~g~~ll~~~~~~~ 123 (315)
T PLN02922 44 QTGLFDARRYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVVNLVGSRRGVLAAAIGCLALGAAGLVWASLVAGNI 123 (315)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHccCh
Confidence 348999999999999999982 33332233457888999999999999999998776622224789
Q ss_pred HHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCc---cccccccchHHHHHHHHHHHHHHHH
Q 023826 75 RAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGST---RENLCLSITATVLSASLLVGLTTSL 151 (276)
Q Consensus 75 ~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~~---~~~~~~~~~~~~ll~slp~~l~~~~ 151 (276)
+++++|++|++++++||+||+|+||+|+||++++++||++++.++||+|++. .+....+++++.++.|+|.++++++
T Consensus 124 ~~l~iG~~g~~~~~~Yt~gP~pl~y~gLGE~~v~i~fG~l~v~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~ 203 (315)
T PLN02922 124 RVILLLAAAILCGYVYQCPPFRLSYKGLGEPLCFAAFGPLATTAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTL 203 (315)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccCcchHHHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999882 1111223678889999999999999
Q ss_pred HHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhc
Q 023826 152 ILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENH 231 (276)
Q Consensus 152 ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ll~~ll~lPla~~~~~~~~~~~ 231 (276)
+|++||+||+|+||++||||++|++|+|+|+++|.++...+|++++..+..+..|+++++..++++|++.+..+.+.+++
T Consensus 204 iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~~~~l~~ll~lpl~~~~~~~~~~~~ 283 (315)
T PLN02922 204 ILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLKALPLPCALLCFLTLPLGKLVVDFVEKNH 283 (315)
T ss_pred HHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999998865446888999999998887765
Q ss_pred cCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023826 232 KDKGKIFMAKYYCVRFHALFGAALVAGLITA 262 (276)
Q Consensus 232 ~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~ 262 (276)
+++.++.+.+++|+|.++++++++++|++++
T Consensus 284 ~~~~~l~~~~~~t~~~~~l~g~ll~~g~~l~ 314 (315)
T PLN02922 284 KDNAKIFMAKYYCVRLHALFGAALALGLVLA 314 (315)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5577788888999999999999999999764
No 4
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=100.00 E-value=2.4e-46 Score=344.03 Aligned_cols=246 Identities=20% Similarity=0.298 Sum_probs=216.6
Q ss_pred hhhhcccCchhhHHhhhhhhhcc---------------cCCcc--eeeeecccCC----HHHHHHHHHHHHHHHH-HHHH
Q 023826 8 LFIYSKVCPRATFLLFCPSVLYS---------------KESHW--LVISFVLLGS----RTGTLVTAYLLLVLGF-IGLT 65 (276)
Q Consensus 8 ~~~~~~~~~~~~~~~f~~~~~~~---------------~~~~~--~~~~~n~~g~----~~~v~~~~~~~l~~~~-lGl~ 65 (276)
.++++.++|+.+++|++++..++ .|+|+ ++.+.|++++ ++.+...+..++..++ +|++
T Consensus 35 ~~~~~~f~~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~ 114 (303)
T COG1575 35 FWYGKSFNLLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVI 114 (303)
T ss_pred HHHccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35566899999999999999881 44422 4566777775 4556666666665555 4777
Q ss_pred HHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHH
Q 023826 66 WASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLV 145 (276)
Q Consensus 66 l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~ 145 (276)
. ...+||.++.+|.+|+++|++||+||+|++|+|+||++|+++||++++.|+||+|+++ ++|..++.|+|+
T Consensus 115 ~--~~~s~~~~l~lG~l~~~~g~~YTgGp~PlgY~gLGEi~~~vffG~l~v~g~~yiqt~~-------~~~~~ll~slp~ 185 (303)
T COG1575 115 L--AALSDWLVLLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGPLIVLGAYYIQTGR-------LSWAILLPSLPV 185 (303)
T ss_pred H--HHHhhhHHHHHHHHHHHheeeeccCCcCcccCCHHHHHHHHHHHHHHHHHHHHHhccc-------chHHHHHHHHHH
Confidence 5 6788999999999999999999999999999999999999999999999999999998 899999999999
Q ss_pred HHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHH
Q 023826 146 GLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVS 225 (276)
Q Consensus 146 ~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ll~~ll~lPla~~~~~ 225 (276)
++.+++||++||+||+|+|+++||+|+|||+|+++++.+|..+...+|++.++..+.+..|++.++ .++++|+++|..|
T Consensus 186 gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~~~~~~ll-~ll~~Pl~ir~~r 264 (303)
T COG1575 186 GILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLFPVWGLL-FLLALPLAIRAAR 264 (303)
T ss_pred HHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH-HHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999898988888866 5999999999999
Q ss_pred HHHhhccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023826 226 YVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI 264 (276)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~~~ 264 (276)
+++++++ +.+..+.++++.|...++++++.+|++++.+
T Consensus 265 ~v~~~~~-~~~~~p~l~~~~~~~~~~~~l~~~~i~~~~l 302 (303)
T COG1575 265 PVRQNQV-PATLVPMLKNTVKANLLWNLLLAVGILLSQL 302 (303)
T ss_pred HHHhccC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9998865 4467778899999999999999999887643
No 5
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=100.00 E-value=3.3e-46 Score=349.11 Aligned_cols=244 Identities=17% Similarity=0.137 Sum_probs=216.5
Q ss_pred hhcccCchhhHHhhhhhhhc---------------ccCCcceeeeecccCC----HHHHHHHHHHHHHHHH-HHHHHHHH
Q 023826 10 IYSKVCPRATFLLFCPSVLY---------------SKESHWLVISFVLLGS----RTGTLVTAYLLLVLGF-IGLTWASV 69 (276)
Q Consensus 10 ~~~~~~~~~~~~~f~~~~~~---------------~~~~~~~~~~~n~~g~----~~~v~~~~~~~l~~~~-lGl~l~~~ 69 (276)
+++++||.+.++++.+++.. ++|+++++...|.+++ +|+++..++.|+++++ +|+++ +
T Consensus 32 ~~~~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L--~ 109 (317)
T PRK13387 32 VAKIFDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNGIGQHGLKPRNVLTVILLMYVVAAILGVYL--C 109 (317)
T ss_pred hCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcchhccCCCCHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 56789999999999998866 2444444445565553 7899999999999999 59998 6
Q ss_pred hhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHH----------
Q 023826 70 EAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVL---------- 139 (276)
Q Consensus 70 ~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~l---------- 139 (276)
+.+||+++.+|++|++++++||+||+|+||+|+||++++++||++++.++||+|++. ++++.+
T Consensus 110 ~~~g~~~l~igl~g~~~~~~Yt~gP~~l~y~gLGe~~v~i~~G~~~v~g~~yv~t~~-------~~~~~~~~~~~~~~~~ 182 (317)
T PRK13387 110 MNTSWLLLVIGLICFAIGILYTGGPLPLSRMPLGEIFSGLTMGFGIFLLAVYINTNT-------ITIESLLFQGEMFTIQ 182 (317)
T ss_pred HHhcHHHHHHHHHHHHHhhhhcCCCcccccCccHHHHHHHHHHHHHHHHHHHHhcCC-------CchHHHHhcccchhhc
Confidence 789999999999999999999999999999999999999999999999999999987 344333
Q ss_pred ----------HHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 023826 140 ----------SASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSC 209 (276)
Q Consensus 140 ----------l~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ 209 (276)
+.|+|.++.++++|++||+||+|+||++||||+|+++|+|+|+++|..+...+|++++..+..|.+|+++
T Consensus 183 ~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~g~lp~~~ 262 (317)
T PRK13387 183 GNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLMGYISPWA 262 (317)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4899999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023826 210 IFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITAR 263 (276)
Q Consensus 210 ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~~ 263 (276)
++ +++++|++.+..|.++++++++++..+..+++.+.+..+++++++|++++.
T Consensus 263 ll-~ll~lP~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~ll~~ 315 (317)
T PRK13387 263 LL-SFLTLRKPISNLQSFQKEAKDPKYFVIAIRNTVLTNTTFGFLLSASLLIQY 315 (317)
T ss_pred HH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 76 599999999999999887556666777888899999999999999998854
No 6
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=100.00 E-value=1.7e-45 Score=339.68 Aligned_cols=239 Identities=15% Similarity=0.166 Sum_probs=210.4
Q ss_pred hhhcccCchhhHHhhhhhhhcc---------------cCCcceeeeecccCC----HHHHHHHHHHHHHHHH-HHHHHHH
Q 023826 9 FIYSKVCPRATFLLFCPSVLYS---------------KESHWLVISFVLLGS----RTGTLVTAYLLLVLGF-IGLTWAS 68 (276)
Q Consensus 9 ~~~~~~~~~~~~~~f~~~~~~~---------------~~~~~~~~~~n~~g~----~~~v~~~~~~~l~~~~-lGl~l~~ 68 (276)
|+.+++||.+.++++++++..+ .|+++.....|.+++ +|+++..++.++++++ +|+++
T Consensus 20 ~~~~~f~~~~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~~~~~~~~~~a~~~Gi~l-- 97 (284)
T TIGR00751 20 AWLHAFVWLVALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVKTALITSVALGALSGLVL-- 97 (284)
T ss_pred HHcCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3445999999999999988772 232211122344433 6899999999999998 59998
Q ss_pred HhhchH------HHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHH
Q 023826 69 VEAGNL------RAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSAS 142 (276)
Q Consensus 69 ~~~~g~------~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~s 142 (276)
++.+|| +++.+|++|++++++||+||+|+||+|+||++++++||++++.|+||+|+++ ++++.++.|
T Consensus 98 ~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~yvq~~~-------~~~~~ll~s 170 (284)
T TIGR00751 98 ALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQYLQAHR-------VDWVGILPA 170 (284)
T ss_pred HHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCchHHHHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHH
Confidence 567787 7889999999999999999999999999999999999999999999999998 889999999
Q ss_pred HHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHH
Q 023826 143 LLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKL 222 (276)
Q Consensus 143 lp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ll~~ll~lPla~~ 222 (276)
+|.++++++++++||+||+|+|+++||||++||+|+|+|+++|..+...+|++.+..+..+..|+++++ +++++|++.+
T Consensus 171 l~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~~~p~~~ll-~ll~lPl~~~ 249 (284)
T TIGR00751 171 VATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATPISWWCVL-FLLAAPLLLK 249 (284)
T ss_pred HHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH-HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999888888889998876 5999999999
Q ss_pred HHHHHHhhccCcchhhhhHHHHHHHHHHHHHHHHHH
Q 023826 223 VVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAG 258 (276)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~ig 258 (276)
..|.++++ ++++++.+..++|++.++++++++++|
T Consensus 250 ~~~~~~~~-~~~~~l~~~l~~t~~~~~l~~~l~~ig 284 (284)
T TIGR00751 250 AAGPVRSG-RGPRELRPVLRDTGLAMLLWNLLFALG 284 (284)
T ss_pred HHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999875 456778889999999999999998875
No 7
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2e-38 Score=293.97 Aligned_cols=239 Identities=18% Similarity=0.247 Sum_probs=204.4
Q ss_pred hhcccCchhhHHhhhhhhhcc---------------cCCcceee-eecccC----CHHHHHHHHHHHHHHHH-HHHHHHH
Q 023826 10 IYSKVCPRATFLLFCPSVLYS---------------KESHWLVI-SFVLLG----SRTGTLVTAYLLLVLGF-IGLTWAS 68 (276)
Q Consensus 10 ~~~~~~~~~~~~~f~~~~~~~---------------~~~~~~~~-~~n~~g----~~~~v~~~~~~~l~~~~-lGl~l~~ 68 (276)
.++++||.+.++++++.+..+ .|+++... ..|.+. ++++++..+..++.+++ +|+++
T Consensus 33 ~~~~f~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l-- 110 (296)
T PRK05951 33 LFRSFDPLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIALQLGWSL-- 110 (296)
T ss_pred hcCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHHHHHHHHHHHHHHHHHHHHH--
Confidence 347999999999999988771 22220000 122222 26899999999988888 58887
Q ss_pred HhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHH
Q 023826 69 VEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLT 148 (276)
Q Consensus 69 ~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~ 148 (276)
...++|+.+.+|++|+++++.||+||+|+||+|+||+.++++||++++.|++|+|++. +++..+..|+|.+++
T Consensus 111 ~~~~~~~~l~l~~~~~~~~~~Yt~~P~~lky~glGe~~v~~~~g~~~vlg~~~~~~~~-------~~~~~~~~sl~~~l~ 183 (296)
T PRK05951 111 VLDRGIGAVTLALLGVFLWTCYMGPPFFLKYRWLGEHLVFYAWSHMLVMGLIYVWLGN-------LSSPNLLAGVPLGLL 183 (296)
T ss_pred HHhccHHHHHHHHHHHHHHHHHcCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHhCc-------ccHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999998 788899999999999
Q ss_pred HHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHH
Q 023826 149 TSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVE 228 (276)
Q Consensus 149 ~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ll~~ll~lPla~~~~~~~~ 228 (276)
+++++++||+||+|+||++||||+|+++|+|++ ++|......+|+.++..+..|..|+++++ .++++|++.+..+...
T Consensus 184 ~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~ll~lp~~~~~~~~~~ 261 (296)
T PRK05951 184 MALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLW-ALLSLLVAYALCLWQL 261 (296)
T ss_pred HHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 89999999999999999999999998766 5999999999888776
Q ss_pred hhccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023826 229 ENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI 264 (276)
Q Consensus 229 ~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~~~ 264 (276)
++. ++++ . +.+.|.+..+++++++|++++..
T Consensus 262 ~~~-~~~~-~---~~~~~~~~~~g~l~~~~~~l~~~ 292 (296)
T PRK05951 262 RKF-PPDP-D---EATVQLFMLFGYLYILATLLSAL 292 (296)
T ss_pred hhC-cccc-c---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 653 3333 2 25999999999999999998754
No 8
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=100.00 E-value=6.4e-37 Score=282.70 Aligned_cols=242 Identities=19% Similarity=0.266 Sum_probs=208.9
Q ss_pred hhcccCchhhHHhhhhhhhc-----------c----cCCcceeeeecccCC----HHHHHHHHHHHHHHHH-HHHHHHHH
Q 023826 10 IYSKVCPRATFLLFCPSVLY-----------S----KESHWLVISFVLLGS----RTGTLVTAYLLLVLGF-IGLTWASV 69 (276)
Q Consensus 10 ~~~~~~~~~~~~~f~~~~~~-----------~----~~~~~~~~~~n~~g~----~~~v~~~~~~~l~~~~-lGl~l~~~ 69 (276)
..+++||.+.++.+++++.. | .|++..+...|.+.+ +|+++..+..++++++ +|+++ .
T Consensus 31 ~~~~~~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G~is~~~~~~~~~~~~~~~~~~g~~l--~ 108 (293)
T PRK06080 31 WLGSFHPLLALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRGGISPKQVKRAAIAFFGLAALLGLYL--V 108 (293)
T ss_pred HcCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 34678999999988887665 1 132222222333332 6889999999998888 59887 4
Q ss_pred hhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHH
Q 023826 70 EAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTT 149 (276)
Q Consensus 70 ~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~~ 149 (276)
...+++.+.+|+++++++++||.||+|+||+|+||+.+++.+|++++.+++|+|+++ ++++.++.++|.++++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~Ys~~p~~~~~~glge~~~~~~~G~~~~~~~~~~~~~~-------~~~~~~~~~l~~~l~~ 181 (293)
T PRK06080 109 AVSGWWLLLLGLLCIAAAILYTGGPKPYGYTGLGELFVGVFFGLVIVLGTYYLQAGT-------VDSAVFLPALPCGLLI 181 (293)
T ss_pred HHHhHHHHHHHHHHHHHhhhhcCCCCccCCCCcHHHHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999999999999987 7888999999999999
Q ss_pred HHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHh
Q 023826 150 SLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEE 229 (276)
Q Consensus 150 ~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ll~~ll~lPla~~~~~~~~~ 229 (276)
.+++++||+||+|+||++||||+|+++|+|++++++..+..++|+..+..+..+..|++.++ +++++|.+.+.++.+.+
T Consensus 182 ~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~ll-~ll~~p~~~~~~~~~~~ 260 (293)
T PRK06080 182 GAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLGLASPWGLL-FLLSLPLAVKAARPVLR 260 (293)
T ss_pred HHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998989998776 69999999999999887
Q ss_pred hccCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023826 230 NHKDKGKIFMAKYYCVRFHALFGAALVAGLITA 262 (276)
Q Consensus 230 ~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~ 262 (276)
++ ++++..+..+.+++.+..+++++++|++++
T Consensus 261 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (293)
T PRK06080 261 KQ-KPETLIPALKATGKTNLLFGLLFAIGLLLS 292 (293)
T ss_pred cC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 64 445555677789999999999999998864
No 9
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.97 E-value=4.5e-29 Score=229.68 Aligned_cols=226 Identities=17% Similarity=0.215 Sum_probs=172.6
Q ss_pred cCchhhHH-hhhhhhhc-----------ccCCcceeeeecccCC----HHHHHHHHHHHHHHHHH-HHHHHHHhhchHHH
Q 023826 14 VCPRATFL-LFCPSVLY-----------SKESHWLVISFVLLGS----RTGTLVTAYLLLVLGFI-GLTWASVEAGNLRA 76 (276)
Q Consensus 14 ~~~~~~~~-~f~~~~~~-----------~~~~~~~~~~~n~~g~----~~~v~~~~~~~l~~~~l-Gl~l~~~~~~g~~~ 76 (276)
+||..+++ .+.+.... |.|++......|.+.+ +|+++..+..+..++++ |+++ ++|..
T Consensus 34 ~~~~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~is~~~a~~~~~~~~~~~~~l~~~l-----~~~~~ 108 (283)
T TIGR01476 34 EHWWLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVALVL-----GNWLI 108 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 67877776 33344333 3333322223444443 68899998888888873 6543 45655
Q ss_pred HHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHh
Q 023826 77 IMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFC 155 (276)
Q Consensus 77 l~~g~i~~l~~~~YS~~P~~l~y~g-lGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~ 155 (276)
..++.++++.++.||.||+|+||+| +||+.+++++|..+..+++.++. . +++..++.+++.++++.++++.
T Consensus 109 ~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~l~~~~i~~~ 180 (283)
T TIGR01476 109 VLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFA-P-------LTWQSVVVALIYSLGAHGIMTL 180 (283)
T ss_pred HHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHHHhC-C-------CCHHHHHHHHHHHHHHHHHHHH
Confidence 7788889999999999999999998 79999999998887777776653 3 6778888999999999999999
Q ss_pred cCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhccCcc
Q 023826 156 SHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKG 235 (276)
Q Consensus 156 Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ll~~ll~lPla~~~~~~~~~~~~~~~ 235 (276)
||+||+|+||++||||+|+++|+|++++++..+...+|+..+........|+++.++.++..|...+..+.+++++ +
T Consensus 181 nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ll~~p~~~~~~~~~~~~~---~ 257 (283)
T TIGR01476 181 NDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLIWGQPWVATIVFLLLVAQIYNQIKLFLRDP---Q 257 (283)
T ss_pred HhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhCh---H
Confidence 9999999999999999999999999999999999888877766555444676533334777888888888777642 2
Q ss_pred hhhhhHHHHHHHHHHHHHHH
Q 023826 236 KIFMAKYYCVRFHALFGAAL 255 (276)
Q Consensus 236 ~~~~~~~~t~k~~~l~~~ll 255 (276)
+..+..+.|++.+++++.+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~ 277 (283)
T TIGR01476 258 QNYVRYNATANPFYVLGMLA 277 (283)
T ss_pred HhhHHhhhhcHHHHHHHHHH
Confidence 22334567999999999776
No 10
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.97 E-value=6.7e-29 Score=231.38 Aligned_cols=196 Identities=20% Similarity=0.214 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhh--chHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhHHHHHHHHH
Q 023826 46 RTGTLVTAYLLLVLGF-IGLTWASVEA--GNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYL 121 (276)
Q Consensus 46 ~~~v~~~~~~~l~~~~-lGl~l~~~~~--~g~~~l~~g~i~~l~~~~YS~~P~~l~y~g-lGE~~v~l~fG~l~~~g~~~ 121 (276)
++++...++.++++++ +|+++.. .. .+++.+.+|++|++++++||+||+|+||+| +||+.++..+|..++.+++
T Consensus 98 ~~~a~~~~~~l~~~~~~lg~~l~~-~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i~vg~~~~~~~~~~~~- 175 (306)
T TIGR02056 98 EPEVITQIVLLFIAGIAIAFILDL-WAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALGASYIALPWWAGH- 175 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhcccchHHHHHHHHHHHHHHHHcCChhhhhhcccHHHHHHHHHHHHHHHHHHH-
Confidence 6889999999999888 5887622 22 247889999999999999999999999998 7999999888877776655
Q ss_pred HhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHH
Q 023826 122 LLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGL 201 (276)
Q Consensus 122 v~~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~ 201 (276)
.++++ +++..++.+++.++++.++++.||+||+|+|+++||||+|+++|+|++++++..+...++.+.+....
T Consensus 176 a~~g~-------~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~~~~ 248 (306)
T TIGR02056 176 ALFGE-------LNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYLL 248 (306)
T ss_pred HHhCC-------CcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666 78888899999999999999999999999999999999999999999999999988888877666554
Q ss_pred h-hhhhHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHH
Q 023826 202 S-RALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAA 254 (276)
Q Consensus 202 ~-g~lP~~~ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~l 254 (276)
. +..|++.++ .++++|.+.+..|.++++ +.+..+..+.+++.....|.+
T Consensus 249 ~~~~~~~~~ll-~ll~~p~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 298 (306)
T TIGR02056 249 AIGENLYAAAL-VALIIPQITFQDKYFLKD---PLKNDVKYQASAQPFLVLGIF 298 (306)
T ss_pred HhcCcHHHHHH-HHHHHHHHHHHHHHHHhC---hHhhCcchhhhhhHHHHHHHH
Confidence 4 455555455 489999999999988763 222333455677776665543
No 11
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=1.2e-28 Score=227.20 Aligned_cols=196 Identities=15% Similarity=0.096 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHH--HHHhhhhHHHHHHHHH
Q 023826 46 RTGTLVTAYLLLVLGFI--GLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEP--LCFAAFGPFATTAFYL 121 (276)
Q Consensus 46 ~~~v~~~~~~~l~~~~l--Gl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~--~v~l~fG~l~~~g~~~ 121 (276)
++++++.+..+.+++.. |+++ ....+|+.+.+|.++++.++.||+||.|+||+|+||. .++.++|+ .+.|+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~l~l--~~~~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~-~v~G~~~ 153 (282)
T PRK13105 77 DRAMHRTTLWASVVTTVPFLVVL--LAVGSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSP-ALYGLVL 153 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHH-HHHHHHH
Confidence 67787777766666653 6665 5566899999999999999999999999999999999 77888887 7888888
Q ss_pred HhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHH
Q 023826 122 LLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGL 201 (276)
Q Consensus 122 v~~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~ 201 (276)
+ ++. +++..++.+.+.++++.++...||+||+|+||++||||+|+++|+|+|.+++..+...++++.+.
T Consensus 154 ~-~~~-------~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~--- 222 (282)
T PRK13105 154 A-GAP-------FTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLA--- 222 (282)
T ss_pred h-hcc-------ccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHH---
Confidence 7 554 67778889999999999999999999999999999999999999999999999999999987763
Q ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHH-hhccCcchhhhhHHHHHHHHHHHHHHHHHHH
Q 023826 202 SRALPLSCIFLCAMTSPIGKLVVSYVE-ENHKDKGKIFMAKYYCVRFHALFGAALVAGL 259 (276)
Q Consensus 202 ~g~lP~~~ll~~ll~lPla~~~~~~~~-~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl 259 (276)
.+. |. .++ .++++|++.+..+.+. ++ +++++..+..+++++.++++|+++++..
T Consensus 223 ~~~-~~-~~l-~ll~~p~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~l~~~~~ 277 (282)
T PRK13105 223 LPW-PG-WLA-AVLALPYVVNTARFWSVTD-ADCERANRGWRRFLWLNYVSGFLVTMLL 277 (282)
T ss_pred HHh-HH-HHH-HHHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 232 22 334 5899999999998887 55 4567788899999999999999998843
No 12
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=99.93 E-value=2.4e-24 Score=201.43 Aligned_cols=199 Identities=19% Similarity=0.197 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhHHHHHHHHHH-
Q 023826 46 RTGTLVTAYLLLVLGFI-GLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLL- 122 (276)
Q Consensus 46 ~~~v~~~~~~~l~~~~l-Gl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~g-lGE~~v~l~fG~l~~~g~~~v- 122 (276)
+++++..+..++++|+. |.. .++....+++.+++.++.||.||+++||++ +||+.+++++|.++..++++.
T Consensus 109 ~~~a~~~~~~l~~~~~~l~~~------l~~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~~~ 182 (314)
T PRK07566 109 LRWVLYLIAVLTVLGLAVAYL------LGPWVFLAALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSYEGLPWWAGAAAF 182 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HChHHHHHHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 67888888888777763 332 378888889999999999999999999999 699999999987776555444
Q ss_pred hcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHh
Q 023826 123 LGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLS 202 (276)
Q Consensus 123 ~~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~ 202 (276)
+++. .++..++.+++.++++.+++..||+||+|+||++|+||+|+++|++++++++..+...+|++++.....
T Consensus 183 ~~~~-------~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~~~~~ 255 (314)
T PRK07566 183 GAGL-------PSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIALLLA 255 (314)
T ss_pred ccCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4334 678888999999999999999999999999999999999999999999999999998998877554333
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023826 203 RALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITA 262 (276)
Q Consensus 203 g~lP~~~ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~ 262 (276)
...+++..+..++..|.+....+..+ ++++++ ...+.+.+++.+++++ ..++.++
T Consensus 256 ~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~ll-~~~~~~~ 310 (314)
T PRK07566 256 WGQPLYAAIVGLLLIPQITLQDRLLR-DPLERD---VWYNASAQPFYVLGML-VTALAIR 310 (314)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHhh-ChhhcC---hhhhhhhhHHHHHHHH-HHHHHhc
Confidence 23344332334677888877766633 212222 2334567777766554 3455443
No 13
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.92 E-value=3.2e-23 Score=197.96 Aligned_cols=198 Identities=20% Similarity=0.198 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHH-hhchHHHHHHHHHHHHHheeeccCCcccccccc-hHHHHHhhhhHHHHHHHHHH
Q 023826 46 RTGTLVTAYLLLVLGF-IGLTWASV-EAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLL 122 (276)
Q Consensus 46 ~~~v~~~~~~~l~~~~-lGl~l~~~-~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~gl-GE~~v~l~fG~l~~~g~~~v 122 (276)
++++...+..++++++ +|+++... ...++..+.+++++++.++.||+||+++||+|+ |++..+..+|.+++++++ .
T Consensus 167 ~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~~~~lp~~~g~-a 245 (375)
T PLN00012 167 ENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISLPWWAGQ-A 245 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHHHHHHHHHHHHH-H
Confidence 5777777777777776 46664211 124678889999999999999999999999997 999988888877776665 5
Q ss_pred hcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHh
Q 023826 123 LGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLS 202 (276)
Q Consensus 123 ~~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~ 202 (276)
.++. +++..++.+++.+++..++++.||++|+|+|+++|++|+||++|++++++++..+..+..+..+.....
T Consensus 246 ~~g~-------~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~~~l~~ 318 (375)
T PLN00012 246 LFGT-------LTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVAGYLLA 318 (375)
T ss_pred HcCC-------CCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666 788888999999999999999999999999999999999999999999999876666665544433332
Q ss_pred -hhhhHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHHH
Q 023826 203 -RALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAAL 255 (276)
Q Consensus 203 -g~lP~~~ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll 255 (276)
+..++..++ .++.+|......+.+.+ ++.+..+..+.+++.+++++++.
T Consensus 319 ~~~~~y~~~~-~~l~l~~l~~~~~~~~~---~p~~~~~~~~~~a~~~~~~~~l~ 368 (375)
T PLN00012 319 IGKPYYALAL-LGLIIPQIFFQFKYFLP---DPVKNDVKYQASAQPFLVFGLLV 368 (375)
T ss_pred HhHHHHHHHH-HHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333333 47788888888876655 34334445566889999888764
No 14
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.92 E-value=3.1e-23 Score=190.46 Aligned_cols=196 Identities=19% Similarity=0.170 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcc-ccccc-chHHHHHhhhhHHHHHHHHHHh
Q 023826 47 TGTLVTAYLLLVLGF-IGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFR-LSYQG-LGEPLCFAAFGPFATTAFYLLL 123 (276)
Q Consensus 47 ~~v~~~~~~~l~~~~-lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~-l~y~g-lGE~~v~l~fG~l~~~g~~~v~ 123 (276)
++.......+..+++ +|+++ .....||..+.+++++.+.++.||.||.| +||.| +||+.++..+|..++.++++.+
T Consensus 77 ~~~~~~~~~l~~i~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~ 155 (285)
T PRK12872 77 TKAYGLFLLLNVLGLYLGAYL-LAVIGGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVYYY 155 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhc
Confidence 455556655555555 47765 23456899999999999999999999874 88866 8999999999999999998888
Q ss_pred cCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhh
Q 023826 124 GSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR 203 (276)
Q Consensus 124 ~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g 203 (276)
++. +++..++.++...+.+......||+||+|+|+++|++|+|+++|+|++++++..+...+++..+.....|
T Consensus 156 ~~~-------~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~ 228 (285)
T PRK12872 156 QLT-------IFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTG 228 (285)
T ss_pred ccc-------cchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 765 5667778888888888888889999999999999999999999999999999999999999999888888
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHH
Q 023826 204 ALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGA 253 (276)
Q Consensus 204 ~lP~~~ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ 253 (276)
..|++.+.+ ++..|......+.+.++ +++++.... ....|.+++.|+
T Consensus 229 ~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~g~ 275 (285)
T PRK12872 229 LLPLLLLVL-LLLLAYVLYYIIKLFAA-DDKKDLLYL-SLLDKEHMLLGL 275 (285)
T ss_pred HhhHHHHHH-HHHHHHHHHHHHHHHhc-ccccchhHH-HHHhHHHHHHHH
Confidence 889887664 66677777666666554 344443322 123445444444
No 15
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.88 E-value=4.2e-23 Score=182.95 Aligned_cols=216 Identities=18% Similarity=0.253 Sum_probs=172.9
Q ss_pred ecccCCHHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHH
Q 023826 40 FVLLGSRTGTLVTAYLLLVLGFIGLTWASVEA----GNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFA 115 (276)
Q Consensus 40 ~n~~g~~~~v~~~~~~~l~~~~lGl~l~~~~~----~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~ 115 (276)
+..+-.+..|.+.+.....+|+.|.....+.. ....++.+|.++ .++.||+| +.+||..+||+...+.|||+.
T Consensus 139 vd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls--~sflytgg-igfkyialgdliili~fgpia 215 (359)
T KOG4581|consen 139 VDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLS--GSFLYTGG-IGFKYIALGDLIILILFGPIA 215 (359)
T ss_pred HHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcc--cceeEecc-cceEEEeccCEEEEEeechHH
Confidence 33344456677777776666664333211222 123567788665 79999998 599999999999999999999
Q ss_pred HHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHH
Q 023826 116 TTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSL 195 (276)
Q Consensus 116 ~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~ 195 (276)
++.+|-.|+|+ ..|..+..++|.++-+-+|+++||.||.|.||++|..|+++.+|+..+..+|..+.+++|.+
T Consensus 216 vlfaf~~q~g~-------l~~~~l~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~py~l 288 (359)
T KOG4581|consen 216 VLFAFAIQTGH-------LAIFPLGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLL 288 (359)
T ss_pred HHHHHHHhcCc-------eeEEeehheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHH
Confidence 99999999998 66777889999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc
Q 023826 196 LFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPK 272 (276)
Q Consensus 196 ~~~~~~~g~lP~~~ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~~~~~~~~~~~ 272 (276)
..++..- ...|. +++++++|.+++.-|+++.++ .-+++. . +|+|.++++|++++.+..++.-+++--.||
T Consensus 289 f~i~~~~--~si~~-~lplltip~afqiek~frneq-a~~~lp-~--qtakln~~~gi~yv~~~~~ahqlpa~~l~k 358 (359)
T KOG4581|consen 289 FFIFALH--CSISF-ALPLLTIPMAFQIEKQFRNEQ-AFHKLP-Q--QTAKLNFFFGIFYVFACCCAHQLPAFGLPK 358 (359)
T ss_pred HHHHHHH--HHHHH-HhHHhhchhHHhHHHHhhhHh-hhhhcc-h--hhhhHHHHHHHHHHHHHHHhccCCcCCCCC
Confidence 7766542 34443 448999999999999997753 234333 3 699999999999999999987777766665
No 16
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=99.88 E-value=1.9e-21 Score=181.64 Aligned_cols=157 Identities=20% Similarity=0.243 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHh-hhhHHHHHHHHHHhc
Q 023826 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFA-AFGPFATTAFYLLLG 124 (276)
Q Consensus 46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l-~fG~l~~~g~~~v~~ 124 (276)
+++.+..+..+.++|+ .+ ....|++.+.++.++.++++.||.||+|+||+|++|..+.. ..|.....|.++...
T Consensus 97 ~~~a~~~~~~~~~lal---~l--a~~~~~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~ 171 (308)
T PRK12887 97 RRQGQRIVIITGILAL---IL--AALLGPWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQ 171 (308)
T ss_pred HHHHHHHHHHHHHHHH---HH--HHHHhHHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666555544444 33 34568899999999999999999999999999999866544 446555566544321
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 023826 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRA 204 (276)
Q Consensus 125 ~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~ 204 (276)
.... ....++...++.+++..+++.++.+.||+||+|+||++|+||+|+++|+|++.+++..+..++|+..+.....+.
T Consensus 172 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~ 250 (308)
T PRK12887 172 WLLG-GSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSL 250 (308)
T ss_pred HHHh-ccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1100 011266777889999999999999999999999999999999999999999999999999999999888866655
Q ss_pred hhHH
Q 023826 205 LPLS 208 (276)
Q Consensus 205 lP~~ 208 (276)
.++.
T Consensus 251 ~~~~ 254 (308)
T PRK12887 251 PTVN 254 (308)
T ss_pred hhHH
Confidence 4443
No 17
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.87 E-value=9.5e-21 Score=178.45 Aligned_cols=174 Identities=18% Similarity=0.230 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhh----chHHHHHHHHHHHHHheeeccCCcccccccc-hHHHHHhhhhHHHHHHH
Q 023826 46 RTGTLVTAYLLLVLGF-IGLTWASVEA----GNLRAIMLLTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAF 119 (276)
Q Consensus 46 ~~~v~~~~~~~l~~~~-lGl~l~~~~~----~g~~~l~~g~i~~l~~~~YS~~P~~l~y~gl-GE~~v~l~fG~l~~~g~ 119 (276)
+++++..+..+..+|+ +|+++ ... .++.++..+++++++++.||.||+++||+++ ||+.+++++|..++.+.
T Consensus 94 ~~~al~~~~~l~~la~~lg~~L--~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl~~~~~~~~~~ 171 (331)
T PRK12392 94 EKEALWNSIIVLLLAIGLGVWL--GLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGFITFLSA 171 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHHHHHHHHHHHH
Confidence 6888889988888888 58876 333 2566777788999999999999999999985 99999999997666544
Q ss_pred HHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHH
Q 023826 120 YLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAI 199 (276)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~ 199 (276)
++..++ +++..++.+++.++++.+....||++|+|+|++.|+||+|+++|++++.++......++.++.+..
T Consensus 172 -~a~~g~-------~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~ 243 (331)
T PRK12392 172 -NALFSD-------IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWL 243 (331)
T ss_pred -HHHhcC-------CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHH
Confidence 444455 677778889999999999999999999999999999999999999999887766654555555444
Q ss_pred HHhhhhhHHHHHHHHhHHHHHHHHHHHHHh
Q 023826 200 GLSRALPLSCIFLCAMTSPIGKLVVSYVEE 229 (276)
Q Consensus 200 ~~~g~lP~~~ll~~ll~lPla~~~~~~~~~ 229 (276)
...-..++......++..|......+..++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~q~~l~r~ 273 (331)
T PRK12392 244 AWSWGFTVLMYFILVGLVLNIVIQIQLYRD 273 (331)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333222322222223444555444444433
No 18
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.86 E-value=9.9e-21 Score=175.84 Aligned_cols=162 Identities=18% Similarity=0.174 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHheeeccC----Cccc---ccccchHHHHHhhhhHHHHHHHHH
Q 023826 50 LVTAYLLLVLGF-IGLTWASVEAGNLRAIMLLTCAVICGYIYQCP----PFRL---SYQGLGEPLCFAAFGPFATTAFYL 121 (276)
Q Consensus 50 ~~~~~~~l~~~~-lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~----P~~l---~y~glGE~~v~l~fG~l~~~g~~~ 121 (276)
++.+..+.+++. +|+++ .+..||++ +++++.++++.||.| |.|+ ++.|+||+++++++|..++.+...
T Consensus 98 ~~~a~~ls~la~llGl~L--a~~~g~~l--l~ll~~l~g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~ 173 (307)
T PRK13591 98 KKIGLLVSLLAFLLGTYI--LAMDGMLL--LAFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGS 173 (307)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHhHHH--HHHHHHHHHHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHh
Confidence 334555555555 58887 56778754 578899999999998 8888 667799999999999877644211
Q ss_pred HhcCccccccccchHHHHHHHHHHHHHHHH----HHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHH
Q 023826 122 LLGSTRENLCLSITATVLSASLLVGLTTSL----ILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLF 197 (276)
Q Consensus 122 v~~~~~~~~~~~~~~~~ll~slp~~l~~~~----ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~ 197 (276)
. ++. +..+++.++.... ....||+||+|+|+++||+|+|+++|++++++++..+..++|++++
T Consensus 174 ~-~~~------------~~~~~~i~l~~~~~l~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li 240 (307)
T PRK13591 174 Y-CGS------------LIPVGLIFLFFGVKLFINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLG 240 (307)
T ss_pred h-hhh------------HHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 1 111 1223334444422 3368999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHh
Q 023826 198 AIGLSRALPLSCIFLCAMTSPIGKLVVSYVEE 229 (276)
Q Consensus 198 ~~~~~g~lP~~~ll~~ll~lPla~~~~~~~~~ 229 (276)
..+..|.+|+..... +-+++.-.--.+.+.+
T Consensus 241 ~~~~~g~l~~~~~~~-~~s~~~~l~~~~~~~~ 271 (307)
T PRK13591 241 IALIFGVIAFEPIIL-LYSFVCGLICIQVYSS 271 (307)
T ss_pred HHHHHHHhccCchhh-HHHHHHHHHHHHHHcC
Confidence 999999998765442 4456555544444433
No 19
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.84 E-value=2.8e-19 Score=165.11 Aligned_cols=188 Identities=14% Similarity=0.150 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhhchH--HHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHh
Q 023826 47 TGTLVTAYLLLVLGF-IGLTWASVEAGNL--RAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLL 123 (276)
Q Consensus 47 ~~v~~~~~~~l~~~~-lGl~l~~~~~~g~--~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~ 123 (276)
+++......+.+++. +|+.+ ....++ +.+.+ ..++.++.||+||+|+||+|++|..++..+ .+++.++|++|
T Consensus 87 ~s~~~~~~~~~~l~~~l~l~l--~~~~~~~~~~~ll--~~i~~~~~YS~pP~rlk~~p~~~~~~~g~~-~~~~~~~y~~~ 161 (282)
T PRK12875 87 YRGDRRVLVAVALSGALALAF--LLVLPPAAWPALL--AFLVLSVEYSAPPLRFKTTPVLDSLSNGLY-ILPGVAAYALV 161 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHH--HHHHHHHHHcCCCccchhccHHHHHHHHHH-HHHHHHHHHHH
Confidence 344444444444343 46665 223233 33333 357899999999999999999998763222 47778999999
Q ss_pred cCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhh
Q 023826 124 GSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR 203 (276)
Q Consensus 124 ~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g 203 (276)
+++ .++..+..+ .++++.++...||+||+|+|+++||||+|+++|+|+++++......++-...+.. +
T Consensus 162 tg~-------~~~~~l~~a--~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~---~ 229 (282)
T PRK12875 162 SGS-------LPPLLAVAG--GWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAV---D 229 (282)
T ss_pred cCC-------CcHHHHHHH--HHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHH---H
Confidence 887 555554444 4799999999999999999999999999999999999988877766665544332 2
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 023826 204 ALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLIT 261 (276)
Q Consensus 204 ~lP~~~ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l 261 (276)
+...++ +...|...-. +.....+.++.- ++--..+...|.+++.+.+.
T Consensus 230 --~~~~~~--~~~~p~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 277 (282)
T PRK12875 230 --LRLGAL--LLVYPALVLA---ILRAGIAVDRAY---WWFPAINTVVGMLLTLGGLW 277 (282)
T ss_pred --HHHHHH--HHHHHHHHHH---Hhccccchhhhh---HHHHHHHHHHHHHHHHHHHH
Confidence 222211 3445544322 222212223332 22333445666666666553
No 20
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.82 E-value=2.3e-18 Score=158.83 Aligned_cols=226 Identities=14% Similarity=0.089 Sum_probs=155.4
Q ss_pred cCchhhHHhhhhhhhc-----------c--cCCcceeeeecccCC----HHHHHHHHHHHHHHHHHHHHHHHHhhchHHH
Q 023826 14 VCPRATFLLFCPSVLY-----------S--KESHWLVISFVLLGS----RTGTLVTAYLLLVLGFIGLTWASVEAGNLRA 76 (276)
Q Consensus 14 ~~~~~~~~~f~~~~~~-----------~--~~~~~~~~~~n~~g~----~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~ 76 (276)
.+|...++++++.+.. | .|.+-.+...|.+.+ ++++...+..++++++ .+ ....++..
T Consensus 42 ~~~~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~~~---~l--~~~~~~~~ 116 (285)
T PRK12847 42 PDISLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIAL---VI--LLLLNKTT 116 (285)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHH---HH--HHHHhHHH
Confidence 6788888888877655 1 121111112333332 4666666555555544 33 23458888
Q ss_pred HHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhc
Q 023826 77 IMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCS 156 (276)
Q Consensus 77 l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~N 156 (276)
+.+++++.+.++.||.. -+++++||+..++++|. .+.+++++++++ ++++.++.+++..+++.+....|
T Consensus 117 ~~~~~~~~~~~~~Y~~~---Kr~~~~~~~~~g~~~~~-~~l~~~~a~~g~-------~~~~~~~l~~~~~~w~~~~~~~~ 185 (285)
T PRK12847 117 IYLSFIAVILIVLYPLM---KRFFYWPQLFLGFTFNM-GILMAFAAVQNQ-------LDIEAILLYIGCIFWTIGYDTIY 185 (285)
T ss_pred HHHHHHHHHHHHhcccc---ccCCcccHHHHHHHHHH-HHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999852 23567899999999885 567788888887 77888899999999999999999
Q ss_pred CCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhccCcch
Q 023826 157 HFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGK 236 (276)
Q Consensus 157 n~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ll~~ll~lPla~~~~~~~~~~~~~~~~ 236 (276)
+++|+|+|+++|++|+|+++|+|++.+++.......+++.......|..|++.+.. .+..-......+.. +. +++++
T Consensus 186 a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~~~~~~~-~~-~~~~~ 262 (285)
T PRK12847 186 AYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHNIFYLAI-LAAAGIFYYQYKLL-DF-DNPAN 262 (285)
T ss_pred HhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH-HHHHHHHHHHHHHh-CC-CCHHH
Confidence 99999999999999999999999999999988888888777777777666654332 22222212222221 21 22222
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023826 237 IFMAKYYCVRFHALFGAALVAGLITA 262 (276)
Q Consensus 237 ~~~~~~~t~k~~~l~~~ll~igl~l~ 262 (276)
++ +.-|.+..++.++.++++++
T Consensus 263 ---~~-~~f~~~~~~~~l~~~~~~~~ 284 (285)
T PRK12847 263 ---CM-YAFKANHYVGLLLFLGAVLG 284 (285)
T ss_pred ---HH-HHHHHhHHHHHHHHHHHHhC
Confidence 22 24555667777776666653
No 21
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.81 E-value=6.3e-18 Score=155.06 Aligned_cols=188 Identities=18% Similarity=0.124 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccc-hHHHHHhhhhHHHHHHHHHHh
Q 023826 46 RTGTLVTAYLLLVLGFI-GLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLL 123 (276)
Q Consensus 46 ~~~v~~~~~~~l~~~~l-Gl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~gl-GE~~v~l~fG~l~~~g~~~v~ 123 (276)
+++.+..+..+.++++. +.. .++....+++++++.++.||. ++||+++ ||+.+++.+|.....+.++++
T Consensus 81 ~~~a~~~~~~~~~~~~~~~~~------l~~~~~~~~~~~~~~~~~Ys~---~lK~~~~~~~~~~~~~~~~~~~~g~~~~~ 151 (279)
T PRK12884 81 RREALLLAILLFILGLIAAYL------ISPLAFLVVILVSVLGILYNW---KLKEYGLIGNLYVAFLTGMTFIFGGIAVG 151 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHH---hhccccchhHHHHHHHHHHHHHHHHHHhC
Confidence 46777777777666663 332 377788888889999999985 6899985 999999998876666665554
Q ss_pred cCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhh
Q 023826 124 GSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR 203 (276)
Q Consensus 124 ~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g 203 (276)
.. +...+..+....+++....+.||++|+|+|+++|+||+|+++|+|++++++......++++.......+
T Consensus 152 ~~---------~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (279)
T PRK12884 152 EL---------NEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFG 222 (279)
T ss_pred CC---------chHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 225667777888888888999999999999999999999999999999999888888887666666666
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHHHHH
Q 023826 204 ALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVA 257 (276)
Q Consensus 204 ~lP~~~ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~i 257 (276)
..+++.++..+++.+.......++.++ +++++ .+ ..+.+...+.++++
T Consensus 223 ~~~~~y~~~~~~~~~~~l~~~~~~~~~-~~~~~---~~--~~~~~~~~~~~~~~ 270 (279)
T PRK12884 223 IFNILYLAPVLVADLIFLYSAYSLLRS-QDRET---IR--KVRKITLTAMLLAL 270 (279)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhcC-CCHHH---HH--HHHHHHHHHHHHHH
Confidence 655554333345555555444333343 22222 21 34555555555544
No 22
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.80 E-value=1.7e-18 Score=154.83 Aligned_cols=105 Identities=24% Similarity=0.392 Sum_probs=93.0
Q ss_pred hhchHHHHHHHHHHHHHheeeccCCcccccccc-hHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHH
Q 023826 70 EAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLT 148 (276)
Q Consensus 70 ~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~gl-GE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~ 148 (276)
+..++..+.+..++.+.++.|| +|+++||+++ +|+.+++.+|.....+.+. +++. .+...++.+.+.+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~Ys-~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~ 158 (257)
T PF01040_consen 88 LLLGPWFLLILLLGFLLGLLYS-PPLRLKRRPLWGELVVALVFGLLILLGAYA-AGGD-------PPPPPFLLAIFFFLL 158 (257)
T ss_pred HhcCchhHHHHHHHHHHHHHHh-hhhhhcceeccchhhHHHhhhHhhhhhhhh-cCCc-------ccHHHHHHHHHHHHH
Confidence 5667888888888888999999 9999999998 9999999999777766655 5554 467788889999999
Q ss_pred HHHHHHhcCCCChHhhHhcCCcccceeechhhHHH
Q 023826 149 TSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSV 183 (276)
Q Consensus 149 ~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~ 183 (276)
..++...||+||+|+|+++|++|+|+++|++++++
T Consensus 159 ~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 159 IFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999998
No 23
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.77 E-value=5.9e-17 Score=149.24 Aligned_cols=231 Identities=16% Similarity=0.088 Sum_probs=148.4
Q ss_pred cccCchhhHHhhhhhhhcc-------------cCCcceeeeecccCC----HHHHHHHHHHHHHHHHHHHHHHHHhhchH
Q 023826 12 SKVCPRATFLLFCPSVLYS-------------KESHWLVISFVLLGS----RTGTLVTAYLLLVLGFIGLTWASVEAGNL 74 (276)
Q Consensus 12 ~~~~~~~~~~~f~~~~~~~-------------~~~~~~~~~~n~~g~----~~~v~~~~~~~l~~~~lGl~l~~~~~~g~ 74 (276)
+..+|...++++++.+... .|++..+...|.+.+ ++++...+..+.+.+. .+ ....++
T Consensus 31 ~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~---~~--~~~l~~ 105 (282)
T TIGR01475 31 GLPGLKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIILSLALFL---SA--SYFLNP 105 (282)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHH---HH--HHHHhH
Confidence 4567888888888887761 222212223344333 4666666655443333 22 223356
Q ss_pred HHHHHHHHHHHHheeeccCCcccccc-cchHHHHHhhhhHHHHHHHHHHhcCccccccccch--HHHHHHHHHHHHHHHH
Q 023826 75 RAIMLLTCAVICGYIYQCPPFRLSYQ-GLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSIT--ATVLSASLLVGLTTSL 151 (276)
Q Consensus 75 ~~l~~g~i~~l~~~~YS~~P~~l~y~-glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~--~~~ll~slp~~l~~~~ 151 (276)
....++..+.+..+.|+. +||+ ++|++..++.+|. ++.+++.+++++ .+ ...++.+++..+++.+
T Consensus 106 ~~~~l~~~~~~~~~~Y~~----~Kr~~~~~~~~~g~~~~~-~~~~g~~a~~g~-------~~~~~~~~ll~~~~~~w~~~ 173 (282)
T TIGR01475 106 LAFILSPLVLLVLIIYPY----TKRFTFLCHYVLGSTYGL-APLAGWVAVIGT-------ISFFLVAWLLGIGVGFWIAG 173 (282)
T ss_pred HHHHHHHHHHHHHHHHhh----HhccccccHHHHHHHHHH-HHHHHHHHHhCC-------ccchHHHHHHHHHHHHHHHH
Confidence 566677777778889973 6755 5899999999885 556667777776 45 6777889999999999
Q ss_pred HHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhc
Q 023826 152 ILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENH 231 (276)
Q Consensus 152 ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ll~~ll~lPla~~~~~~~~~~~ 231 (276)
..+.||++|+|+|+++|++|+|+++|+|++++.+.....+++.+.......+...+..+....+..+......+.. +.
T Consensus 174 ~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~l~~~~~~~-~~- 251 (282)
T TIGR01475 174 FDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGYIALLALILIGLILAYEHYIV-DP- 251 (282)
T ss_pred HHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHc-CC-
Confidence 9999999999999999999999999999999999887777776665554443322222221123333333444433 22
Q ss_pred cCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023826 232 KDKGKIFMAKYYCVRFHALFGAALVAGLITARI 264 (276)
Q Consensus 232 ~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~~~ 264 (276)
+++++ +++.--..+...++++.+|++++.+
T Consensus 252 ~~~~~---~~~~ff~~~~~l~~~~~~g~~~~~~ 281 (282)
T TIGR01475 252 GDQSK---IQRAFFYANGFLSITFLIGVIIDVL 281 (282)
T ss_pred CCHHH---HHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 22221 2222344455566777777776543
No 24
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.76 E-value=2.3e-16 Score=146.76 Aligned_cols=198 Identities=15% Similarity=0.009 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023826 46 RTGTLVTAYLLLVLGF-IGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG 124 (276)
Q Consensus 46 ~~~v~~~~~~~l~~~~-lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~ 124 (276)
+|++...+..+.++|. +|+.+ ...+++..+.+|+.+.++++.|+.+|.. .+.|.+++.-++.++. +..++ ++++
T Consensus 96 ~~~a~~~~i~l~~i~~~l~~~l--~~~~~~~~~~l~~~~~~~~~~Y~~~kr~-~~~p~~~l~G~~~~~~-~~~~g-~~~~ 170 (297)
T PRK12871 96 SKNAFALFILLAAVTSALILTL--PYPNSLYVFVIMLYSYGIEAFYQVKKRN-QKYPVAQLLGRTDFTL-FPAAG-YLCY 170 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccccc-ccccHHHHHHHHHHHH-HHHHH-HHHh
Confidence 6888888888888887 46665 4456778889999999999999988854 5667777544455555 33333 4566
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 023826 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRA 204 (276)
Q Consensus 125 ~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~ 204 (276)
++ +++..++.+++.++++.+...+||++|+|+|+++|++|+|+++|++++++.......++.+..+.. ..+.
T Consensus 171 g~-------~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~~~-~~~~ 242 (297)
T PRK12871 171 GQ-------PDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAIFF-LREL 242 (297)
T ss_pred CC-------CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHHHH-HHHh
Confidence 65 677888889999999999999999999999999999999999999999987776665555433322 2233
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023826 205 LPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITA 262 (276)
Q Consensus 205 lP~~~ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~ 262 (276)
-+.......+...|+.....+..+.+ ++++-+ +.-+....+...++..+++.
T Consensus 243 g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~f~~~~~~~~~~~~~~~~~ 294 (297)
T PRK12871 243 GPIALYGFLAGFVLLAGANLYLWKEK--SQDAGM----KILPLYHASLVIYAVSIILD 294 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHH----HHHHHHHHHHHHHHHHHHhh
Confidence 22211111134455655555555332 233222 35566666666666666554
No 25
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.74 E-value=3.4e-16 Score=144.78 Aligned_cols=232 Identities=15% Similarity=0.065 Sum_probs=145.7
Q ss_pred hcccCchhhHHhhhhhhhcc---------cCCcceeee-----ecccCC----HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023826 11 YSKVCPRATFLLFCPSVLYS---------KESHWLVIS-----FVLLGS----RTGTLVTAYLLLVLGFIGLTWASVEAG 72 (276)
Q Consensus 11 ~~~~~~~~~~~~f~~~~~~~---------~~~~~~~~~-----~n~~g~----~~~v~~~~~~~l~~~~lGl~l~~~~~~ 72 (276)
.++.+|...++++++++.-. -|.+ .+.+ .|.+.+ ++++...+..+++.++ .+ ....
T Consensus 33 ~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~-iD~~~~RT~~RPL~sG~is~~~a~~~~~~~~~~~l---~l--~~~l 106 (284)
T PRK12888 33 DGSVHWADLLLVTVAMVGARTFAMAANRIIDRE-IDARNPRTAGRELVTGAVSVRTAWTGALVALAVFL---GA--AALL 106 (284)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH---HH--HHHH
Confidence 35667888888888776651 1111 1112 222222 4566655554443333 22 2334
Q ss_pred hHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHH
Q 023826 73 NLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLI 152 (276)
Q Consensus 73 g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~~~~i 152 (276)
++....++.++++..+.|+ +.-++++++++..+++++. .+++++++++++ ++++.++.+++.++++...
T Consensus 107 ~~~~~~l~~~~~~~~~~Y~---~~Kr~t~~~~~~lg~~~~~-~~l~g~~a~~g~-------~~~~~~ll~~~~~~w~~~~ 175 (284)
T PRK12888 107 NPLCLALAPLAVAPLVVYP---YAKRFTNFPHAILGLAQAV-GPVGAWIAVTGT-------WSWPAVLLGLAVGLWIGGF 175 (284)
T ss_pred hHHHHHHHHHHHHHHHHHH---HhhcccchhhHHHHHHHHH-HHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHH
Confidence 5655666667777777885 2334567899999988764 556778998887 7888889999999999999
Q ss_pred HHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhcc
Q 023826 153 LFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHK 232 (276)
Q Consensus 153 ll~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ll~~ll~lPla~~~~~~~~~~~~ 232 (276)
.+.|+++|+|+|+++|+||+|+++|+|++.+++.......+++.........+.+..+....++........+.. + .+
T Consensus 176 ~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~y~~~~~~~~~~l~~~~~~~-~-~~ 253 (284)
T PRK12888 176 DLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGALWWIGLAITAGAFAYEHAIV-S-PT 253 (284)
T ss_pred HHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHc-C-cc
Confidence 999999999999999999999999999999888777666666555544433332222222123333333332222 2 12
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023826 233 DKGKIFMAKYYCVRFHALFGAALVAGLITARI 264 (276)
Q Consensus 233 ~~~~~~~~~~~t~k~~~l~~~ll~igl~l~~~ 264 (276)
++++.. +.--+.+...|+++.+|++++.+
T Consensus 254 ~~~~~~---~~ff~~n~~ig~~~~~~~~~~~~ 282 (284)
T PRK12888 254 DLSRVN---RAFFTANGFVGIALFGFALLDLL 282 (284)
T ss_pred CHHHHH---HHHHHHhhHHHHHHHHHHHHHHH
Confidence 333322 11233445567888888887654
No 26
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=99.74 E-value=4.8e-16 Score=142.98 Aligned_cols=197 Identities=13% Similarity=0.086 Sum_probs=130.4
Q ss_pred ccCchhhHHhhhhhhhc-----------ccCCcceeeeecccCC----HHHHHHHHHHHHHHHHH-HHHHHHHhhchHHH
Q 023826 13 KVCPRATFLLFCPSVLY-----------SKESHWLVISFVLLGS----RTGTLVTAYLLLVLGFI-GLTWASVEAGNLRA 76 (276)
Q Consensus 13 ~~~~~~~~~~f~~~~~~-----------~~~~~~~~~~~n~~g~----~~~v~~~~~~~l~~~~l-Gl~l~~~~~~g~~~ 76 (276)
+.++...++.+++.+.. |.|.+.-...+|.+.+ ++++...+..+.++|+. +.. .++..
T Consensus 33 ~~~~~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~------l~~~~ 106 (279)
T PRK09573 33 KIDLKGIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSIF------INIYA 106 (279)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHHHHHHH------HhHHH
Confidence 44677777777776554 2222211112333332 57787788777777763 332 36677
Q ss_pred HHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHh
Q 023826 77 IMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFC 155 (276)
Q Consensus 77 l~~g~i~~l~~~~YS~~P~~l~y~g-lGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~ 155 (276)
..++.++.+..+.||. ++||++ +||+.++..+|..++.|.+++++.. ..++..+...+++.+....
T Consensus 107 ~~l~~~~~~~~~~Ys~---~lKr~~~~~~~~vg~~~G~~~~~g~~~~~~~~----------~~~~l~~~~f~~~~~~~~~ 173 (279)
T PRK09573 107 FLIALLNSILLYLYAK---DLKKTGLIGNLIVAYLTGLSFIFGGLAVFNVL----------RIIILFLCAFFSTWSREIV 173 (279)
T ss_pred HHHHHHHHHHHHHHHH---HHhcCCcHHHHHHHHHHHHHHHHHHHHHccch----------HHHHHHHHHHHHHHHHHHH
Confidence 8888889989999985 578877 4999999999999888877766421 2233444555777788889
Q ss_pred cCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHhHHHHHHHHHHHHH
Q 023826 156 SHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCI-FLCAMTSPIGKLVVSYVE 228 (276)
Q Consensus 156 Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~l-l~~ll~lPla~~~~~~~~ 228 (276)
||++|+|+|+++|++|+|+++|+|++.++.........+........+...+..+ ....+..+......+..+
T Consensus 174 ~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~ 247 (279)
T PRK09573 174 KDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGIFGIYYLIVVIICDILFIIAMLILLK 247 (279)
T ss_pred hhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 9999999999999999999999999999887666555554444433343233221 111334555555555443
No 27
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=99.74 E-value=1.1e-15 Score=140.81 Aligned_cols=134 Identities=16% Similarity=0.081 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhhchHH-HHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHh
Q 023826 46 RTGTLVTAYLLLVLGFI-GLTWASVEAGNLR-AIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLL 123 (276)
Q Consensus 46 ~~~v~~~~~~~l~~~~l-Gl~l~~~~~~g~~-~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~ 123 (276)
++++...++.++++|.. +..+ .++. ....+...++.++.||. ++||++.++..++...|.+++.++++++
T Consensus 82 ~~~a~~~~~~~~~~~~~l~~~~-----l~~~~~~~~~~~~~~~~~~Yt~---~lKr~~~~~~~v~~~~g~~~~l~g~~a~ 153 (279)
T PRK12869 82 RKEALAVGSALSALGTALGFLL-----LGPLTALFIALGWFFYAVVYTI---WLKPRTWLNIVIGGFAGNAAALAGYASG 153 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhCc---ccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777777763 4431 2332 22334445567889994 7999999999999999999999999999
Q ss_pred cCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHH
Q 023826 124 GSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYS 194 (276)
Q Consensus 124 ~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl 194 (276)
+++ ++++.++.+++..+++.+..++|+++|+|+|+++|+||+|++.|+|++++.......+...
T Consensus 154 ~g~-------~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~ 217 (279)
T PRK12869 154 TGS-------LDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIP 217 (279)
T ss_pred hCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHH
Confidence 987 7888899999999999999999999999999999999999999999999887665544433
No 28
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.73 E-value=1.4e-15 Score=139.69 Aligned_cols=126 Identities=17% Similarity=0.185 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhHHHHHHHHHHhc
Q 023826 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLG 124 (276)
Q Consensus 46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~g-lGE~~v~l~fG~l~~~g~~~v~~ 124 (276)
++++...+..+.++|+ .+ ....|+....++..+.+.++.||. ++|+++ +||+.++..+|..++.|.+.+
T Consensus 81 ~~~a~~~~~~l~~~g~---~l--~~~~~~~~~~~~~~~~~~~~~Y~~---~~k~~~~lg~~~vg~~~g~~~~~g~~a~-- 150 (277)
T PRK12883 81 RKAALYYSLLLFAVGL---AL--AYLINIEAFLFALGAYVLMFLYAW---KLKPLPFIGNVVVALLTGATPIYGAIAV-- 150 (277)
T ss_pred HHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHHHHHHHHHHhh---cccCCcchhhHHHHHHHHHHHHHHHHHh--
Confidence 4666666666655443 33 234688888888889999999996 456655 699999999998887666443
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHH
Q 023826 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAV 189 (276)
Q Consensus 125 ~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~ 189 (276)
++ +++..+... ...++..+..+.||+||+|+|+++|++|+|+++|+|++++......
T Consensus 151 ~~-------~~~~~~~~~-~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~ 207 (277)
T PRK12883 151 GR-------IGLAGYLAI-CAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFG 207 (277)
T ss_pred cc-------ccHHHHHHH-HHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHH
Confidence 43 455544433 3456667788999999999999999999999999999999876543
No 29
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.72 E-value=2.5e-15 Score=138.29 Aligned_cols=166 Identities=14% Similarity=0.031 Sum_probs=120.5
Q ss_pred cCchhhHHhhhhhhhc-----------c--cCCcceeeeecccCC----HHHHHHHHHHHHHHHHHHHHHHHHhhchHHH
Q 023826 14 VCPRATFLLFCPSVLY-----------S--KESHWLVISFVLLGS----RTGTLVTAYLLLVLGFIGLTWASVEAGNLRA 76 (276)
Q Consensus 14 ~~~~~~~~~f~~~~~~-----------~--~~~~~~~~~~n~~g~----~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~ 76 (276)
.+|...++++++.+.. | .|++-.+...|.+.+ +|++...+..++++|+. + +....++..
T Consensus 32 ~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~g~~---i-l~~~~~~~~ 107 (280)
T TIGR01473 32 VNPPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLGVA---I-LAAFVNPLA 107 (280)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHH---H-HHHHHhHHH
Confidence 5777777777777665 1 121101112233322 56777777777666553 1 123356777
Q ss_pred HHHHHHHHHH-heeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHh
Q 023826 77 IMLLTCAVIC-GYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFC 155 (276)
Q Consensus 77 l~~g~i~~l~-~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~ 155 (276)
..++.++++. ++.||. ++||+++++..++..+|.++++++|++++++ +++..++++++..+++..-...
T Consensus 108 ~~l~~~~~~~~~~~Yt~---~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~-------~~~~~~~l~~~~~~w~~~~~~~ 177 (280)
T TIGR01473 108 ALLGLFGIFFYVIVYTI---WLKRRTPQNTVIGGFAGAVPPLIGWAAVTGS-------ISLGAWLLFAIIFLWQPPHFWA 177 (280)
T ss_pred HHHHHHHHHHHHhhcCh---hhccCCchhHHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHHHH
Confidence 7788888765 899995 6899999999998899999999999999887 7788888888888888776666
Q ss_pred cCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHH
Q 023826 156 SHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILY 193 (276)
Q Consensus 156 Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ay 193 (276)
...+|+|+||++|+||+|+++|+|++.+..........
T Consensus 178 ~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~ 215 (280)
T TIGR01473 178 LALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALL 215 (280)
T ss_pred HHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHH
Confidence 66899999999999999999999998876554443333
No 30
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.68 E-value=5.3e-15 Score=138.63 Aligned_cols=193 Identities=15% Similarity=0.040 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccc-ccchHHHHHhhhhHHHHHHHHHHhc
Q 023826 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSY-QGLGEPLCFAAFGPFATTAFYLLLG 124 (276)
Q Consensus 46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y-~glGE~~v~l~fG~l~~~g~~~v~~ 124 (276)
++++...+..+ .++|+.+ ....|+....+++.+++.++.||. .|| ++++....++.++..+.. +|++++
T Consensus 118 ~~~a~~~~~~~---~~~g~~l--~~~~~~~~~~l~~~~~~~~~~Y~~----~KR~t~~~~~~~Gl~~~~~~l~-g~~a~~ 187 (314)
T PRK12878 118 RKQAKVFMVLQ---ALVGLAV--LLQFNWFAIALGIASLAIVAAYPF----MKRITWWPQFFLGLAFSWGALM-GWAAHF 187 (314)
T ss_pred HHHHHHHHHHH---HHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHH----HHhcCCcchHHHHHHHHHHHHH-HHHHHh
Confidence 35554444333 3345554 234588889999999999999974 554 455666556666544444 489998
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 023826 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRA 204 (276)
Q Consensus 125 ~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~ 204 (276)
++ +++..+++.+...+++..--.+++++|+|+|+++|++|+|+++|++++++.+........++.+.....+
T Consensus 188 g~-------~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~l~~~~~~- 259 (314)
T PRK12878 188 GS-------LSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLMGLAFWLAG- 259 (314)
T ss_pred CC-------CchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 87 6777777777778888888888999999999999999999999999999999766665554444444444
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHhh-ccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023826 205 LPLSCIFLCAMTSPIGKLVVSYVEEN-HKDKGKIFMAKYYCVRFHALFGAALVAGLITAR 263 (276)
Q Consensus 205 lP~~~ll~~ll~lPla~~~~~~~~~~-~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~~ 263 (276)
.+++.++ +.+..+.. ...+ ..+. .+++++ + ++.-+.+..++.++.++++++.
T Consensus 260 ~~~~~~~-~~~~~~~~-l~~~-~~~~~~~~~~~---~-~~~F~~n~~~~~ll~~~l~~~~ 312 (314)
T PRK12878 260 VPLLALL-GLLAAAAH-LAWQ-IARLDIDDPDQ---C-LRLFKSNRDAGLLIFLGLVVGG 312 (314)
T ss_pred CcHHHHH-HHHHHHHH-HHHH-HHHcccCChHH---H-HHHHHHhHHHHHHHHHHHHHHh
Confidence 3555443 24445543 2222 2221 122221 2 3456677778888888877754
No 31
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=99.68 E-value=7.9e-15 Score=135.31 Aligned_cols=194 Identities=16% Similarity=0.104 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcC
Q 023826 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGS 125 (276)
Q Consensus 46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~ 125 (276)
++++...+..++++++. + ....++....++..+.+..+.|+ +.-+++++|++..++.+|.. +..+|.++++
T Consensus 88 ~~~a~~~~~~l~~~~~~---l--~~~l~~~~~~l~~~~~~~~~~Y~---~~Kr~~~~~~~~~g~~~g~~-~~~g~~a~~~ 158 (282)
T PRK12848 88 EKEALALFVVLVLVAFL---L--VLTLNTLTIWLSVAALALAWIYP---FMKRYTHLPQVVLGAAFGWG-IPMAFAAVQG 158 (282)
T ss_pred HHHHHHHHHHHHHHHHH---H--HHHHhHHHHHHHHHHHHHHHHHH---hHHhcCcccHHHHHHHHHHH-HHHHHHHHhC
Confidence 57777777777777653 2 12336667778888888899994 45567789999989998864 4567888888
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023826 126 TRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRAL 205 (276)
Q Consensus 126 ~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~l 205 (276)
+ +++..++++++..+++....+.|+++|+|+|+++|++|+|+++|+|++.+...........+.......+..
T Consensus 159 ~-------~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (282)
T PRK12848 159 S-------VPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLALLAWAGWLLGLG 231 (282)
T ss_pred C-------CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 7 677888899999999999999999999999999999999999999998877644433333333333333443
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023826 206 PLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITA 262 (276)
Q Consensus 206 P~~~ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~ 262 (276)
+++. ..............+.. +. +++++ ++ +.-+.+...|.++.+|++++
T Consensus 232 ~~y~-~~~~~~~~~~~~~~~~~-~~-~~~~~---~~-~~F~~n~~~g~~l~~~~~~~ 281 (282)
T PRK12848 232 WAYY-WGLLVAAALFVYQQKLI-RD-REREA---CF-KAFLNNNWVGLVLFAGIAAS 281 (282)
T ss_pred HHHH-HHHHHHHHHHHHHHHHc-CC-CCHHH---HH-HHHHhCcHHHHHHHHHHHHh
Confidence 3332 21122222222233222 11 22222 21 23344555777777776653
No 32
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.66 E-value=1.3e-14 Score=134.57 Aligned_cols=198 Identities=13% Similarity=-0.027 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcC
Q 023826 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGS 125 (276)
Q Consensus 46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~ 125 (276)
+++....+..++++++. + ...-++....++..+.+..+.||. .-++++++++..++.+|. .+.++|+++++
T Consensus 92 ~~~a~~~~~~~~~~~~~---l--~~~l~~~~~~l~~~~~~~~~~Y~~---~KR~t~~~~~~lg~~~~~-~~l~g~~a~~g 162 (290)
T PRK12870 92 VKVGIVIAIVALLCAAG---L--AFFLNPLSFWLCVAAVPVIFLYPL---AKRVFPVPQLVLAIAWGF-AVLISWSAVTG 162 (290)
T ss_pred HHHHHHHHHHHHHHHHH---H--HHHHhHHHHHHHHHHHHHHHHhhh---hhhccccceeeehHHHHh-HHHHHHHHHcC
Confidence 45666666655555552 2 122355566677788888899973 445667889988999884 67888888888
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023826 126 TRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRAL 205 (276)
Q Consensus 126 ~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~l 205 (276)
+ +++..++++++..+++...-..++++|+|+|+++|.+|+|+++|++++.++.........++.......|..
T Consensus 163 ~-------~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 235 (290)
T PRK12870 163 H-------LDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALTVGFLAILGVLLELH 235 (290)
T ss_pred C-------CCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 7 677788889999999999999999999999999999999999999999877664333333333333334444
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023826 206 PLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI 264 (276)
Q Consensus 206 P~~~ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~~~ 264 (276)
+++. ....+...........++++ ++++.. .+..-+.+...|.++.++++++.+
T Consensus 236 ~~y~-~~~~~~~~~l~~~~~~~~~~--~~~~~~--~~~~F~~n~~~g~~~~~~~~~~~~ 289 (290)
T PRK12870 236 LPFW-IGLAIAAVLWARQYRRLRQA--NLPPLA--YGQLFLQNVWIGFLLLAGMILGSL 289 (290)
T ss_pred HHHH-HHHHHHHHHHHHHHHHhccc--CCChHH--HHHHHHHhhHHHHHHHHHHHHHhh
Confidence 4433 21122222222333333222 122211 123566777788888888877654
No 33
>PLN02878 homogentisate phytyltransferase
Probab=99.66 E-value=2e-14 Score=132.03 Aligned_cols=150 Identities=19% Similarity=0.237 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeecc--CCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023826 47 TGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQC--PPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG 124 (276)
Q Consensus 47 ~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~--~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~ 124 (276)
++.+.....++++|+ .+. ...+.++++.....++++++.||. ||+|+|+.++-...++++-+...+-.++|...
T Consensus 68 ~~a~~~~~~~~~lg~---~la-~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~ 143 (280)
T PLN02878 68 ATGVAIVTSFAIMSF---GMG-WIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHM 143 (280)
T ss_pred HHHHHHHHHHHHHHH---HHH-HHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhH
Confidence 555555555544444 331 123334566666778789999997 99999999986666666655454433444331
Q ss_pred Cc--cccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHH
Q 023826 125 ST--RENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGL 201 (276)
Q Consensus 125 ~~--~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~ 201 (276)
++ ... ...++...+...+-..+...++.+.||+||+|+||+.|++|+|+++|+|++.++...+..++|+..++...
T Consensus 144 ~~~~~g~-~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~ 221 (280)
T PLN02878 144 QTHVLGR-PAVFTRPLIFATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGA 221 (280)
T ss_pred HHHHhCC-ccccchhHHHHHHHHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 110 11134455555556778888999999999999999999999999999999999999999999986554433
No 34
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=99.66 E-value=2.6e-14 Score=132.67 Aligned_cols=126 Identities=18% Similarity=0.180 Sum_probs=100.3
Q ss_pred hhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHH
Q 023826 70 EAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTT 149 (276)
Q Consensus 70 ~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~~ 149 (276)
...++....++.++.+....||. .-+++++|++..+++++ .+++++|++++++ +++..++++++..+++
T Consensus 107 ~~~~~~~~~l~~~~~~~~~~Y~~---~Kr~t~~~~~~~g~~~~-~~~l~g~~a~~g~-------~~~~~~ll~~~~~lw~ 175 (291)
T PRK12886 107 WFLNPLCLYLSPPALFFLLLYSY---CKRFTALAHVVLGFCLA-LAPLGAWIAIRGT-------IELPAILLGLAVLFWV 175 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh---hhccccccHHHHHHHHH-HHHHHHHHHHcCC-------CcHHHHHHHHHHHHHH
Confidence 45677777777777777888984 22346789999988866 4567889999887 7788888999999999
Q ss_pred HHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023826 150 SLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALP 206 (276)
Q Consensus 150 ~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP 206 (276)
...-+.++++|+|+|+++|++|+|+++|++++++.........+.+.......+..+
T Consensus 176 ~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (291)
T PRK12886 176 AGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLG 232 (291)
T ss_pred HHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 988788899999999999999999999999999988777777776655555544433
No 35
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.66 E-value=2.2e-14 Score=132.83 Aligned_cols=191 Identities=15% Similarity=0.033 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023826 46 RTGTLVTAYLLLVLGF-IGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG 124 (276)
Q Consensus 46 ~~~v~~~~~~~l~~~~-lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~ 124 (276)
+++.+.....+.+.++ +|+++ ....++....+..++.+++++||.||+|+|+||+.|-.+-..+|.- .+...+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~l--a~~l~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~~~~g~p--~~~~~~~~ 166 (292)
T PRK13595 91 PGEVRPLLRAVLLLNAPFLLYL--ALLLPPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSNAAYALP--LALPALAL 166 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHHHHHHHH--HHHHHHHc
Confidence 5677777777777776 47776 4566787788888889999999999999999999887776666652 23333344
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 023826 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRA 204 (276)
Q Consensus 125 ~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~ 204 (276)
+.. ..+..+ +...++..+.-...++.|+|+||+.|.||+|+++|+|++.++.....+++-+....
T Consensus 167 g~~------~~~~~l---~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~------ 231 (292)
T PRK13595 167 GAP------VPWPPL---LALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLWP------ 231 (292)
T ss_pred CCc------chHHHH---HHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHHH------
Confidence 431 233322 23346667777888999999999999999999999999999987766665443322
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHHHHHHH
Q 023826 205 LPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGL 259 (276)
Q Consensus 205 lP~~~ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl 259 (276)
.++...+ .+.+|.+....+ +.+. +++++....-+...-.+.+.|.+.+.-+
T Consensus 232 ~~~~~~~--~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 282 (292)
T PRK13595 232 VSRLTAL--ALWLICGGMALA-LWRR-PTPETAHRLYPLSIVTPWIVGTVAGVLL 282 (292)
T ss_pred hcchHHH--HHHHHHHHHHHH-HhcC-CCHHHHhccchHHHHHhHHHHHHHHHHH
Confidence 2222212 244555555554 3332 2334333232334445556665544433
No 36
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.66 E-value=1.7e-14 Score=133.08 Aligned_cols=193 Identities=15% Similarity=0.079 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccc-cccchHHHHHhhhhHHHHHHHHHHhc
Q 023826 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLS-YQGLGEPLCFAAFGPFATTAFYLLLG 124 (276)
Q Consensus 46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~-y~glGE~~v~l~fG~l~~~g~~~v~~ 124 (276)
++++...+..+.++|+ .+ .+..++....++.++++.++.||. .| +++++++..++.++..++.| |++++
T Consensus 86 ~~~a~~~~~~~~~~~~---~l--~~~l~~~~~~l~~~~~~~~~~Y~~----~Kr~~~~~~~~~g~~~~~~~~~g-~~a~~ 155 (281)
T TIGR01474 86 VRQAILFLLVQLLVAL---GV--LLQLNPLTILLGVASLALVATYPF----MKRITYWPQLVLGLAFGWGALMG-WAAVT 155 (281)
T ss_pred HHHHHHHHHHHHHHHH---HH--HHHhhHHHHHHHHHHHHHHHHhch----hcccccccHHHHHHHHHHHHHHH-HHHHc
Confidence 3556555555444444 33 234578888899999999999973 44 45789999998888655554 77787
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 023826 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRA 204 (276)
Q Consensus 125 ~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~ 204 (276)
++ +++..++..+...+++.....+|+++|+|+|+++|+||+|+++|+|+++...........+........+.
T Consensus 156 g~-------~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
T TIGR01474 156 GD-------LSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLALAGLIAGL 228 (281)
T ss_pred CC-------CcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 76 67777777888889999999999999999999999999999999999876655544444444433333333
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023826 205 LPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITA 262 (276)
Q Consensus 205 lP~~~ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~ 262 (276)
.+++.... .+..-......... ++ +++++ + ++.-|.+..++.++.+++.++
T Consensus 229 ~~~y~~~~-~~~~~~~~~~~~~~-~~-~~~~~---~-~~~F~~~~~~~~~l~~~~~~~ 279 (281)
T TIGR01474 229 GPVYYLGL-AAAALLLIRQIATL-DI-RDPEN---C-LKLFKANNYVGLLLFAGIALG 279 (281)
T ss_pred cHHHHHHH-HHHHHHHHHHHHHh-CC-CCHHH---H-HHHHHHhhHHHHHHHHHHHHH
Confidence 33332221 22222222233333 22 22221 2 235566667777777776654
No 37
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.65 E-value=1.9e-14 Score=132.10 Aligned_cols=136 Identities=15% Similarity=0.067 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhHHHHHHHHHHhc
Q 023826 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLG 124 (276)
Q Consensus 46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~g-lGE~~v~l~fG~l~~~g~~~v~~ 124 (276)
+++++..+..+.++|++ + .+..++....++..+.+.++.||. ++|+++ +||+.++...|.....|..+...
T Consensus 82 ~~~a~~~~~~l~~~g~~---~--~~~l~~~~~~~~~~~~~~~~~Yt~---~lK~~~~~g~~~vg~~~g~~~~~g~~~~~~ 153 (276)
T PRK12882 82 PRGALAFSILLFAAGVA---L--AFLLPPLCLAIALFNSLLLVLYAE---TLKGTPGLGNASVAYLTGSTFLFGGAAVGT 153 (276)
T ss_pred HHHHHHHHHHHHHHHHH---H--HHHHhHHHHHHHHHHHHHHHHHHH---HHhcccchhHHHHHHHHHHHHHHHHHHhcc
Confidence 57777777777777663 2 122367777888888888999985 889876 59999988888766666544332
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHH
Q 023826 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLF 197 (276)
Q Consensus 125 ~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~ 197 (276)
. .....+..++...+++......||++|+|+|+++|++|+|+++|+|++.++.........+...
T Consensus 154 ~--------~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~ 218 (276)
T PRK12882 154 E--------GLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASP 218 (276)
T ss_pred c--------chHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 1 2334456677777888888999999999999999999999999999999987666655544433
No 38
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=99.63 E-value=1.4e-13 Score=127.70 Aligned_cols=229 Identities=11% Similarity=-0.039 Sum_probs=135.1
Q ss_pred ccCchhhHHhhhhhhhc-----------cc--CCcceeeeecccCC----HHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q 023826 13 KVCPRATFLLFCPSVLY-----------SK--ESHWLVISFVLLGS----RTGTLVTAYLLLVLGFIGLTWASVEAGNLR 75 (276)
Q Consensus 13 ~~~~~~~~~~f~~~~~~-----------~~--~~~~~~~~~n~~g~----~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~ 75 (276)
..+|...++++++.+.. |. |++-.+...|.+.+ ++++...+..+.+++++..+ ..++.
T Consensus 43 ~~~~~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~-----~~n~~ 117 (291)
T PRK12874 43 WFGFKLLILGILAAVSARNFAMAFNRLVDRDIDKDNPRTANRPSVDGRISVKSMVLFIVLNALIFIGVSY-----FINPL 117 (291)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-----HHhHH
Confidence 46777777777777655 11 11111112222222 56777666666554443222 22443
Q ss_pred HHHHHHHHHHHheeeccCCccccc-ccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHH
Q 023826 76 AIMLLTCAVICGYIYQCPPFRLSY-QGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILF 154 (276)
Q Consensus 76 ~l~~g~i~~l~~~~YS~~P~~l~y-~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~~~~ill 154 (276)
-..+++.++.....||. .|| +++|++..++++|..++.| +...+|+ +++..++.+++..+++....+
T Consensus 118 ~~~l~~~~~~~~~~Y~~----~KR~t~~~~~~~g~~~~~~~l~G-~~av~g~-------~~~~~~~l~~~~~~w~~~~~~ 185 (291)
T PRK12874 118 AFKLSFPFLIVLGGYSY----FKRFSSLAHLVLGLSLGLAPIAG-VVAVLGE-------IPLWSVFLALGVMFWVAGFDL 185 (291)
T ss_pred HHHHHHHHHHHHHHHhh----hcccccccHHHHHHHHHHHHHHH-HHHHcCC-------CcHHHHHHHHHHHHHHHHHHH
Confidence 34444455556778883 454 5789999999988665555 4444666 667777888999999999999
Q ss_pred hcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhccCc
Q 023826 155 CSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDK 234 (276)
Q Consensus 155 ~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ll~~ll~lPla~~~~~~~~~~~~~~ 234 (276)
.|+++|+|+|+++|++|+|+++|++++.+........+.+............++..+...+.........+..+ + +++
T Consensus 186 ~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~-~~~ 263 (291)
T PRK12874 186 LYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLGLFAYLGVIVSALILLYEHYLVR-K-DFK 263 (291)
T ss_pred HHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhc-C-CCh
Confidence 99999999999999999999999999998765555544444333222222222222221233333334433332 1 222
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023826 235 GKIFMAKYYCVRFHALFGAALVAGLITARI 264 (276)
Q Consensus 235 ~~~~~~~~~t~k~~~l~~~ll~igl~l~~~ 264 (276)
+. ++..-..+...++++.++++++.+
T Consensus 264 -~~---~~~ff~sn~~l~~l~~~~~~~~~~ 289 (291)
T PRK12874 264 -KI---DKAFFTLNGYLGIVFFIFIVLDVL 289 (291)
T ss_pred -HH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 112234445566777777776654
No 39
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=99.61 E-value=2.7e-13 Score=125.99 Aligned_cols=130 Identities=15% Similarity=0.077 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhhchHHHHHHHHHHHH-HheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHh
Q 023826 46 RTGTLVTAYLLLVLGFI-GLTWASVEAGNLRAIMLLTCAVI-CGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLL 123 (276)
Q Consensus 46 ~~~v~~~~~~~l~~~~l-Gl~l~~~~~~g~~~l~~g~i~~l-~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~ 123 (276)
++++...+..+.++|+. +..+ .++.-..++.++++ ..+.||. ++||++.|+..++...|..+++++++++
T Consensus 90 ~~~a~~~~~~l~~~g~~l~~~l-----~~~~~~~l~~~~~~~~~~~Ys~---~lKr~~~~~~~v~~~~g~~~~l~g~~a~ 161 (296)
T PRK04375 90 PREALIFGLVLGVLGFLLLGLF-----VNPLAAWLTLAGIFFYVVVYTL---WLKRRTPQNIVIGGAAGAMPPLIGWAAV 161 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHhcc---chhcCCccchHHHHHHHHhHHHHHHHHh
Confidence 57777777777766663 3322 12222223333322 3557874 7999999999998788888889999999
Q ss_pred cCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHH
Q 023826 124 GSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVM 190 (276)
Q Consensus 124 ~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~ 190 (276)
+++ +++..++++++..+++..-.++++++|+|+|+++|.+|+|+++|++++++.......
T Consensus 162 ~g~-------~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~ 221 (296)
T PRK04375 162 TGS-------LSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTV 221 (296)
T ss_pred CCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHH
Confidence 887 778888889999999988899999999999999999999999999998875544333
No 40
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.43 E-value=2.2e-11 Score=113.58 Aligned_cols=181 Identities=14% Similarity=0.038 Sum_probs=102.9
Q ss_pred chHHHHHHHHHHHHHheeeccCCccccc-ccchHHHHHhhhhHHHHHHHHHHhcCccccc-cccchHHHHHHHHHHHHHH
Q 023826 72 GNLRAIMLLTCAVICGYIYQCPPFRLSY-QGLGEPLCFAAFGPFATTAFYLLLGSTRENL-CLSITATVLSASLLVGLTT 149 (276)
Q Consensus 72 ~g~~~l~~g~i~~l~~~~YS~~P~~l~y-~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~-~~~~~~~~ll~slp~~l~~ 149 (276)
.++....++..+.+..+.|+. .|| +.+|++..++.+|..+..| +.+.++..... ...++...++..+...+++
T Consensus 116 ln~~~~~l~~~~~~~~~~Y~~----~KR~t~~~~~~lg~~~~~~~~~G-~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~ 190 (300)
T PRK13106 116 VNRWALLLSPIVALIAMSYPY----MKRYTAFANYHLASIQGLAVFSG-AVAVLGLYANSLIQVLLRVPWLFVIGTILWA 190 (300)
T ss_pred HhHHHHHHHHHHHHHHHHHhH----HhcCCcchHHHHHHHHHHHHHHH-HHHHcCCcccchhhhhhHHHHHHHHHHHHHH
Confidence 355444555555666777862 454 5689999999999765554 45555541100 0001122222333334555
Q ss_pred HHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHh
Q 023826 150 SLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEE 229 (276)
Q Consensus 150 ~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~~ll~~ll~lPla~~~~~~~~~ 229 (276)
..--..|+++|+|+|+++|.||+|+++| |++++....+...+..+.........+.+..+.....+.-......+...+
T Consensus 191 ~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~lg~~y~~~~~~~~~~l~~~~~~~~~ 269 (300)
T PRK13106 191 AGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGLGPIAIAATILHGLIMAYAYYLASK 269 (300)
T ss_pred HHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5555679999999999999999999999 889888777766666555554443322222112111211222222222211
Q ss_pred hccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023826 230 NHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILV 266 (276)
Q Consensus 230 ~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~~~~~ 266 (276)
+ ++ +. ..-+.+...|+++.+|++++.+++
T Consensus 270 ---~-~~---~~-~~F~~n~~ig~~~~~~~~~~~~~~ 298 (300)
T PRK13106 270 ---K-GD---FG-RAFYYNIYSSIVLGLGIIIDVLLG 298 (300)
T ss_pred ---c-hH---HH-HHHHHccHHHHHHHHHHHHHHHHc
Confidence 1 22 21 233666678888888888877653
No 41
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.32 E-value=7.5e-10 Score=103.61 Aligned_cols=125 Identities=15% Similarity=0.060 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhhchHHHHHHHHHHHH-HheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHh
Q 023826 46 RTGTLVTAYLLLVLGFI-GLTWASVEAGNLRAIMLLTCAVI-CGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLL 123 (276)
Q Consensus 46 ~~~v~~~~~~~l~~~~l-Gl~l~~~~~~g~~~l~~g~i~~l-~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~ 123 (276)
+++....+..+.++|.. +.. ..++....++.++.+ ..+.||. ++||++..+..++-..|.++++++++++
T Consensus 93 ~~~A~~~~~~l~~~g~~ll~~-----~~n~~~~~l~~~~~~~~~~~Yt~---~lKr~t~~~~~vgg~~ga~p~l~G~~a~ 164 (306)
T PRK13362 93 LGEALGFGLALGVAGFGLLAA-----FTNPLAALFAAFGYVVYVGVYSL---YLKRNSVYGTLVGSLSGAMPPVVGYCAV 164 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHHHhH---HHhccCcHhHHHHHHHHHHHHHHHHHHH
Confidence 56777777777666663 332 224433333334332 4668983 7999999777776666788899999999
Q ss_pred cCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHH
Q 023826 124 GSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVV 185 (276)
Q Consensus 124 ~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~ 185 (276)
+++ +++..+++.....+++..--++-.+.|+|+|+++|.+|+|++.|+|++++..
T Consensus 165 ~g~-------~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~ 219 (306)
T PRK13362 165 TGQ-------FDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHI 219 (306)
T ss_pred cCC-------CcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHH
Confidence 987 6778888888888888887777788899999999999999999999988743
No 42
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.30 E-value=3.7e-10 Score=104.87 Aligned_cols=194 Identities=12% Similarity=0.012 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccc-cchHHHHHhhhhHHHHHHHHHHhc
Q 023826 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQ-GLGEPLCFAAFGPFATTAFYLLLG 124 (276)
Q Consensus 46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~-glGE~~v~l~fG~l~~~g~~~v~~ 124 (276)
++++...+..++++++ .+ ....+.....++..+.+..+.||. .||+ .++++..++.++.. +..+|.+.+
T Consensus 91 ~~~A~~~~~~~~~~~~---~~--~~~l~~~~~~l~~~~~~~~~~Y~~----~KR~t~~~~~~lg~~~~~~-~l~g~~av~ 160 (289)
T PLN02809 91 PFQGVGFLGAQLLLGL---GI--LLQLNNYSRILGASSLLLVFTYPL----MKRFTFWPQAFLGLTFNWG-ALLGWAAVK 160 (289)
T ss_pred HHHHHHHHHHHHHHHH---HH--HHHHhHHHHHHHHHHHHHHHHHhH----HHhcCcchHHHHHHHHHHH-HHHHHHHHh
Confidence 3555544444444333 33 122355667778888888999973 6665 57999888887744 455566777
Q ss_pred CccccccccchHHHHH-HHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHh-
Q 023826 125 STRENLCLSITATVLS-ASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLS- 202 (276)
Q Consensus 125 ~~~~~~~~~~~~~~ll-~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~- 202 (276)
++ .++...+ +.....+++..--..-.+.|+|+|+++|.+|+|+++|++.+.++. .+...++.........
T Consensus 161 g~-------~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~l~~~g~~~ 232 (289)
T PLN02809 161 GS-------LDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLT-GFGAASIGGLALSGYNA 232 (289)
T ss_pred CC-------CChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 76 4444332 333344445332233344699999999999999999999665554 4555556555443332
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHhh-ccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023826 203 RALPLSCIFLCAMTSPIGKLVVSYVEEN-HKDKGKIFMAKYYCVRFHALFGAALVAGLITARIL 265 (276)
Q Consensus 203 g~lP~~~ll~~ll~lPla~~~~~~~~~~-~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~~~~ 265 (276)
+..++.. +. ....... ...+.+.. .+++++ +. +.-+.+...|.++.+|++++..+
T Consensus 233 ~~~~~~~-~~--~~~~~~~-l~~~~~~v~~~~~~~---~~-~~F~~n~~~g~~~~~~~~~~~~~ 288 (289)
T PLN02809 233 GLGWPYY-AG--LAAAAGH-LAWQIQTVDLSSRAD---CN-RKFVSNKWFGAIVFAGIVLGKLF 288 (289)
T ss_pred cCcHHHH-HH--HHHHHHH-HHHHHHHcCCCCHHH---HH-HHHHhCCHHHHHHHHHHHHHHhh
Confidence 3222221 11 1111111 12222111 122232 22 23555556788888888876654
No 43
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.29 E-value=4.7e-10 Score=103.77 Aligned_cols=144 Identities=24% Similarity=0.175 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhHHHHHHHHHHhc
Q 023826 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLG 124 (276)
Q Consensus 46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~g-lGE~~v~l~fG~l~~~g~~~v~~ 124 (276)
+++.+.....+++++.. + .+.-++....++..+.+.++.| | .+||.+ ++....+..+|.....|. .+..
T Consensus 93 ~~~a~~~~~~~~~~~~~---~--a~~l~~~~~~l~~~~~~l~~~Y---~-~~Kr~~~~~~~~lg~~~~~~~~~g~-~a~~ 162 (289)
T COG0382 93 VKEALLLAILLLLLGLA---L--ALLLNPLAFLLSLAALVLALAY---P-FLKRFTFLPQLVLGLAFGLGALAGA-AAVG 162 (289)
T ss_pred HHHHHHHHHHHHHHHHH---H--HHHHhHHHHHHHHHHHHHHHHH---H-HhhcCCchHHHHHHHHHHHHHHHHH-HHHh
Confidence 35555555555555543 2 2333555577778888899999 4 677765 689999999986665554 4444
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 023826 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRA 204 (276)
Q Consensus 125 ~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~ 204 (276)
++ .+...+++.+-..+++.+.-..++++|+|+||+.|.+|+|+.+|++++..+.......+-+...+....+.
T Consensus 163 ~~-------~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~ 235 (289)
T COG0382 163 GS-------LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAGL 235 (289)
T ss_pred Cc-------cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 43 45667778888889999999999999999999999999999999999999887777444333333333344
Q ss_pred hh
Q 023826 205 LP 206 (276)
Q Consensus 205 lP 206 (276)
.+
T Consensus 236 ~~ 237 (289)
T COG0382 236 LG 237 (289)
T ss_pred ch
Confidence 43
No 44
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.22 E-value=2.3e-09 Score=100.05 Aligned_cols=116 Identities=12% Similarity=0.015 Sum_probs=79.1
Q ss_pred hhchHHHHHHHHHHHHHheeeccCCcccccccc-hHHHHHhhhhHHHHHHHHHHhcCccccccccchH----HHHHHHHH
Q 023826 70 EAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLLGSTRENLCLSITA----TVLSASLL 144 (276)
Q Consensus 70 ~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~gl-GE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~----~~ll~slp 144 (276)
...++.-..++.++++..+.|| ..||+.. +.+.-++.++. .+.+++.+.+++ +.++ ..++.+++
T Consensus 112 ~~ln~l~~~l~~~~~~~~~iY~----~~KR~t~~~~~vLGl~~~~-~~l~~~~Av~~~------~~~~~l~~~~~lw~~~ 180 (300)
T PRK12876 112 WLLNPLCFSLAVLSTLLMIIYP----YTKRVTFLCHWILGLVYYL-AILMNFFAIIET------PLSFSLFCMASLWGIS 180 (300)
T ss_pred HHHhHHHHHHHHHHHHHHHHHH----hHhcCCchhHHHHHHHHHH-HHHHHHHHHhcC------cccHHHHHHHHHHHHH
Confidence 4457777777888888889996 3888765 77777777775 455565655443 0333 23344455
Q ss_pred HHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHH
Q 023826 145 VGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLL 196 (276)
Q Consensus 145 ~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~ 196 (276)
..++++.-=....+.|+|+||+.|.||+|+++|++++.+.-.....++.+..
T Consensus 181 ~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l 232 (300)
T PRK12876 181 FGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAY 232 (300)
T ss_pred HHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHH
Confidence 5555554445556999999999999999999999998666555554444433
No 45
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.20 E-value=2.4e-09 Score=99.36 Aligned_cols=200 Identities=10% Similarity=-0.005 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhHHHHHHHHHHhc
Q 023826 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLG 124 (276)
Q Consensus 46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~g-lGE~~v~l~fG~l~~~g~~~v~~ 124 (276)
+++.......+++++.. + ....++.-+.++..+......|. ..||.. ++.+..++.+| ..+++++.+.+
T Consensus 83 ~~~A~~~~~~~~~~~~~---~--~~~ln~l~~~l~~~~~~l~~~yp----~~KR~t~~~~~~lG~~~g-~~~l~g~~Av~ 152 (286)
T PRK12895 83 MREAIAFTIIFIAIFEI---C--TFLLNRLVFILSPIVIFLFIIDP----FLKRYTAWRHIYMGSIIG-LGVLAGYLAVI 152 (286)
T ss_pred HHHHHHHHHHHHHHHHH---H--HHHHhHHHHHHHHHHHHHHHHHH----HHHhCccccHHHHHHHHH-hHHHHHHHHHc
Confidence 45665555555554432 2 23345555556666655555553 467765 68888899999 57777777777
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 023826 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRA 204 (276)
Q Consensus 125 ~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~ 204 (276)
++.+ .....+++.+...+++..-=....+.|+|+|++.|.||+|+++|++.+.++......++............
T Consensus 153 g~~~-----~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~ 227 (286)
T PRK12895 153 PAFP-----YNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR 227 (286)
T ss_pred CCCC-----chHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7621 22334456777788888877888999999999999999999999999987665555444444333333222
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023826 205 LPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILV 266 (276)
Q Consensus 205 lP~~~ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~~~~~ 266 (276)
.+++. +. +.+....-.+++..-+.+++++.. ...-+.+-..|.++.+|.+++.+++
T Consensus 228 ~~~y~-~~--~~~~~~~l~~q~~~~~~~~~~~~~---~~~F~~N~~ig~~~~~~~~~~~~~~ 283 (286)
T PRK12895 228 TLWYL-AA--LIIIYTLVIYQHLIIDPRNPINKR---MSFFNANSFIGFVFLIGIILSLRFP 283 (286)
T ss_pred hHHHH-HH--HHHHHHHHHHHHHHhcCCCHHHHH---HHHHHHcCHHHHHHHHHHHHHhccc
Confidence 22221 21 112222222222211112233221 1234455567788888888877654
No 46
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=98.97 E-value=1.2e-07 Score=88.46 Aligned_cols=140 Identities=15% Similarity=0.080 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccc-cchHHHHHhhhhHHHHHHHHHHhc
Q 023826 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQ-GLGEPLCFAAFGPFATTAFYLLLG 124 (276)
Q Consensus 46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~-glGE~~v~l~fG~l~~~g~~~v~~ 124 (276)
+++....+..+..+++..++. +-...++.-..++.++++....||. .||+ .+..+..++.++ .+++++|.+.+
T Consensus 90 ~~~A~~~~~~~~~~~~~~~~~-l~~~~n~l~~~l~~~~~~~~~~Y~~----~KR~t~~~~~vlg~~~a-~~~l~gw~Av~ 163 (294)
T PRK12873 90 LKTAYSLLIVLLLLSLFVVLS-LPQPSRNLCLSLAFLALPPILIYPS----AKRWFAYPQAILALCWG-FAVLIPWAAAE 163 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHHHHHH----HHhccccchHHHHHHHH-hHHHHHHHHHh
Confidence 355555555554444422211 0011355666777777777888983 4543 445666666655 55566777777
Q ss_pred CccccccccchH--HHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHH
Q 023826 125 STRENLCLSITA--TVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAI 199 (276)
Q Consensus 125 ~~~~~~~~~~~~--~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~ 199 (276)
++ +++ ..+.+.+...+++..-=..-.+.|+|+|+++|.+++|++.|++ +...-..+..++.++....
T Consensus 164 g~-------~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~~~ll~~~ 232 (294)
T PRK12873 164 GS-------LNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSN-ALKTVQICYFLTSIFLALA 232 (294)
T ss_pred CC-------CchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChh-hHHHHHHHHHHHHHHHHHH
Confidence 76 444 2333345666776655445566699999999999999999974 4444444444444433333
No 47
>PLN02776 prenyltransferase
Probab=98.71 E-value=5.6e-06 Score=78.67 Aligned_cols=132 Identities=9% Similarity=0.025 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH-heeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023826 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVIC-GYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG 124 (276)
Q Consensus 46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~-~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~ 124 (276)
++++...+..+.++|+ .+ +....++.-..++..+++. ...|| .+||+.......+...|.++++++|.+.+
T Consensus 75 ~~~A~~~~~~l~~~g~---~~-l~~~~n~l~~~l~~~~~~ly~~vYt----~lKR~t~~~~~lG~~~Ga~ppL~Gw~Avt 146 (341)
T PLN02776 75 VPHAVAWAVVVGAAGV---AL-LAYKTNMLTAGLGAGNILLYAFVYT----PLKQIHPANTWVGAVVGAIPPLMGWAAAS 146 (341)
T ss_pred HHHHHHHHHHHHHHHH---HH-HHHHHhHHHHHHHHHHHHHHHHHHH----hHccCCchhHHHHHHHHHHHHHHHHHHHc
Confidence 3555555555544444 22 1234566666676666555 56888 38999888888898999889999999998
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceee--chhhHHHHHHHHHHHH
Q 023826 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRL--GTERGSVVVKWAVMIL 192 (276)
Q Consensus 125 ~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~l--G~~~a~~l~~~l~~~a 192 (276)
++ +++..+++.+...+|+..=-+.=-+.|.|+|+++|.+.+|+.- |++.++........+.
T Consensus 147 g~-------~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~ 209 (341)
T PLN02776 147 GQ-------LDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLA 209 (341)
T ss_pred CC-------CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHH
Confidence 87 7778788888888887632222234578899999999999865 5677766654444333
No 48
>PRK13592 ubiA prenyltransferase; Provisional
Probab=98.44 E-value=2.5e-05 Score=72.82 Aligned_cols=103 Identities=6% Similarity=0.000 Sum_probs=62.3
Q ss_pred HHHHheee-----ccCCcccccccc-hHHHHHhhhhHHHHHH-HHH-----HhcCccccccccchHHHHHHHHHHHHHHH
Q 023826 83 AVICGYIY-----QCPPFRLSYQGL-GEPLCFAAFGPFATTA-FYL-----LLGSTRENLCLSITATVLSASLLVGLTTS 150 (276)
Q Consensus 83 ~~l~~~~Y-----S~~P~~l~y~gl-GE~~v~l~fG~l~~~g-~~~-----v~~~~~~~~~~~~~~~~ll~slp~~l~~~ 150 (276)
..++.+.| +- .+|+.|+ |.+.+...-|.....+ .+| ....... ......+..++-..+...
T Consensus 117 ~~~i~~lY~~lm~a~---~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~----~~~~~~~~l~l~afl~~l 189 (299)
T PRK13592 117 WFLFLYIYGTLMSFW---FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP----LLSLPTVLLAFTMYFPSL 189 (299)
T ss_pred HHHHHHHHHHHHHHH---HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc----hhhHHHHHHHHHHHHHHH
Confidence 34455566 54 7888876 8887766555322111 111 1111100 011111344444445555
Q ss_pred HHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHH
Q 023826 151 LILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYS 194 (276)
Q Consensus 151 ~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl 194 (276)
+--.+.+++| |+|++ |.+|+|+++|+|+|.++...+..++.+
T Consensus 190 ~rEI~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~ 231 (299)
T PRK13592 190 IWEVCRKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDIL 231 (299)
T ss_pred HHHHHHhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHH
Confidence 5678999999 87775 589999999999999988777666554
No 49
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0096 Score=55.77 Aligned_cols=170 Identities=14% Similarity=0.044 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH-HheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023826 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVI-CGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG 124 (276)
Q Consensus 46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l-~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~ 124 (276)
|++.+..+...-.+|. .+ +....++..-.+++.+++ =...||. -+|||---.+..+-.=|-.+++.+|.+.+
T Consensus 98 p~~al~fgl~L~~~g~---~~-l~~~vn~laa~l~~~gi~~Yv~vYT~---~lKR~T~~NiviGg~aGa~PpliGwaAvt 170 (304)
T COG0109 98 PREALAFGLVLGVAGF---SL-LWFLVNLLAAVLGLFGIFFYVVVYTL---WLKRRTPQNIVIGGFAGAMPPLIGWAAVT 170 (304)
T ss_pred HHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHhhhhhh---hccCCcccceeeeeccccccccceeeeee
Confidence 4666666655544444 33 224456654444444433 4678996 78998766666665568899999999999
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 023826 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRA 204 (276)
Q Consensus 125 ~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~ 204 (276)
|+ +++..+++...+.+|+--=-++=-++-.|+=+++|.--+|+.-|++.+++....-.++.....+.....|.
T Consensus 171 g~-------~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~~~g~ 243 (304)
T COG0109 171 GS-------ISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAPVSLLLALLGY 243 (304)
T ss_pred CC-------CCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 98 67777766666665554322333344566778999999999999999988654433333333233333444
Q ss_pred h-hHHHHHHHHhHHHHHHHHHHHHHh
Q 023826 205 L-PLSCIFLCAMTSPIGKLVVSYVEE 229 (276)
Q Consensus 205 l-P~~~ll~~ll~lPla~~~~~~~~~ 229 (276)
. +....+...+........++.+++
T Consensus 244 ~g~~Y~v~a~~l~~~~l~~a~~~~~~ 269 (304)
T COG0109 244 VGYLYLVVATLLGAWFLALAWKLYRK 269 (304)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3 233333446666666666666654
No 50
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=96.54 E-value=0.23 Score=46.56 Aligned_cols=112 Identities=13% Similarity=0.025 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchH-HHHHhhhhHHHHHHHHHHhc
Q 023826 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGE-PLCFAAFGPFATTAFYLLLG 124 (276)
Q Consensus 46 ~~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE-~~v~l~fG~l~~~g~~~v~~ 124 (276)
+++....+..++++|+ .+ ....++....+....++..+.||. ++|+++.-+ +.+..+++.-...|+....
T Consensus 92 ~~~A~~~~~~l~~~~l---~l--a~~l~~~~~~~~~~~~~~~~~Ys~---~lK~~~~~d~l~va~~~~lr~~~G~~a~~- 162 (295)
T PRK12324 92 VSLAYILAVVLLVASL---AL--AYLLSPKLALVLLVYLVLNLAYSF---KLKHQPVLDVFCIASGFVLRAIAGGVAIG- 162 (295)
T ss_pred HHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHHHHHHHHHhhH---HhcCCchhhHHHHHHHHHHHHHHHHHHhC-
Confidence 3455555555544444 22 122355555555667778899995 899999754 4556666654445543322
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccc
Q 023826 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPL 173 (276)
Q Consensus 125 ~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~ 173 (276)
.. .+...+..+....+..+..-=.+|..+.++|.+.+|+++-
T Consensus 163 ~~-------~s~wll~~~~~~~lfla~~kR~~E~~~~~~~~~~~r~~~~ 204 (295)
T PRK12324 163 VP-------LSPWLLLCTALLSLFLAAGKRKAELRLLEDTGAKHRKVLE 204 (295)
T ss_pred CC-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccC
Confidence 21 3333334444444555555556667666666666565543
No 51
>PRK08238 hypothetical protein; Validated
Probab=95.63 E-value=0.92 Score=45.31 Aligned_cols=104 Identities=14% Similarity=0.084 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccc-hHHHHHhhhhHHHHHHHHHHhcC
Q 023826 47 TGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLLGS 125 (276)
Q Consensus 47 ~~v~~~~~~~l~~~~lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~gl-GE~~v~l~fG~l~~~g~~~v~~~ 125 (276)
++....+..++++|+ .+ .+..++....+.+..++....||. ++|+++. +-+..++.|+.-+..|+. + .+
T Consensus 273 ~~A~~~~~~l~~~~~---~l--~~~l~~~~~~~~~~~~~~~~~Ys~---~lKr~~~~~~~~la~~~~lr~~~G~~-a-~~ 342 (479)
T PRK08238 273 PFGLAAAPLLLLAGL---AL--ALALGPAFLLVLLAYLALTLAYSL---RLKRKVLVDVLTLAALYTLRIIAGAA-A-IG 342 (479)
T ss_pred HHHHHHHHHHHHHHH---HH--HHHHhHHHHHHHHHHHHHHHHhhH---HhcCCccccchHHHHHHHHHHHHHHH-H-hc
Confidence 444444444444444 33 122355555665666777889995 8999986 555556777654445542 2 22
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC
Q 023826 126 TRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGK 169 (276)
Q Consensus 126 ~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk 169 (276)
.+...+++.... ++...+.+..-..|.+.|++.|+
T Consensus 343 --------~~~s~wll~~~~-~~~l~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 343 --------VALSFWLLAFSM-FFFLSLALVKRYTELRRALQRGK 377 (479)
T ss_pred --------cCHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHhcCC
Confidence 233444443322 44555667777888888888886
No 52
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=93.96 E-value=0.87 Score=41.69 Aligned_cols=41 Identities=15% Similarity=0.037 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechh
Q 023826 138 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTE 179 (276)
Q Consensus 138 ~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~ 179 (276)
.++..+...+..++....||+-|+|.|+++ |++=|..-|+-
T Consensus 39 ~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~i 79 (279)
T PRK12884 39 ALLGFLTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRI 79 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCC
Confidence 334444555666777889999999999999 77777777753
No 53
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=93.86 E-value=2.8 Score=38.67 Aligned_cols=43 Identities=21% Similarity=0.054 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccceeech
Q 023826 136 ATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGT 178 (276)
Q Consensus 136 ~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk-~TL~v~lG~ 178 (276)
....+..+...+..++.+..||+.|+|.||++-| +.=|.-=|+
T Consensus 47 ~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~ 90 (289)
T COG0382 47 KLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGR 90 (289)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCC
Confidence 3555666677788888999999999999999987 333333343
No 54
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=92.59 E-value=1.9 Score=38.13 Aligned_cols=36 Identities=19% Similarity=0.149 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCCCChHhhHhc-CCcccceeechhh
Q 023826 145 VGLTTSLILFCSHFHQVEGDRNV-GKMSPLVRLGTER 180 (276)
Q Consensus 145 ~~l~~~~ill~Nn~~D~e~D~~~-Gk~TL~v~lG~~~ 180 (276)
..+....+...||.-|.|+|+.+ +|..-|..-|+-+
T Consensus 32 ~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~ 68 (257)
T PF01040_consen 32 VFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS 68 (257)
T ss_pred HHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence 34666777889999999999996 3334444344444
No 55
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=92.37 E-value=1.9 Score=40.44 Aligned_cols=43 Identities=14% Similarity=0.002 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccceeechhh
Q 023826 138 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGTER 180 (276)
Q Consensus 138 ~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk-~TL~v~lG~~~ 180 (276)
.++..+-..+..++-+..||+-|+|-|+++.| ++=|..=|+-.
T Consensus 46 ~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is 89 (294)
T PRK12873 46 LLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKIS 89 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCC
Confidence 34445556677788899999999999998877 46665555443
No 56
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=92.28 E-value=1.9 Score=40.40 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHhhHhc-CCcccce---eechhhHHHHHHHHHHHH
Q 023826 140 SASLLVGLTTSLILFCSHFHQVEGDRNV-GKMSPLV---RLGTERGSVVVKWAVMIL 192 (276)
Q Consensus 140 l~slp~~l~~~~ill~Nn~~D~e~D~~~-Gk~TL~v---~lG~~~a~~l~~~l~~~a 192 (276)
+..+...+..++....||+.|+|.||++ .|+.=|. ++.++.|..+...+..++
T Consensus 50 lafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~ 106 (295)
T PRK12324 50 LAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVAS 106 (295)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHH
Confidence 3334455666778899999999999997 3333333 345555554444444444
No 57
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=91.77 E-value=4.9 Score=36.96 Aligned_cols=49 Identities=2% Similarity=-0.023 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC---cccce-eechhhHHHHHH
Q 023826 138 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK---MSPLV-RLGTERGSVVVK 186 (276)
Q Consensus 138 ~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk---~TL~v-~lG~~~a~~l~~ 186 (276)
.++..+...+..++....||+-|+|.|+++.| |.+|. ++.++.+.....
T Consensus 38 ~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~ 90 (282)
T TIGR01475 38 LILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMII 90 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHH
Confidence 44555666688888899999999999998732 33333 445555554443
No 58
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=91.69 E-value=1.8 Score=40.53 Aligned_cols=48 Identities=6% Similarity=-0.092 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCCChHhhHhcCCccccee---echhhHHHHHHHHHHHHHH
Q 023826 146 GLTTSLILFCSHFHQVEGDRNVGKMSPLVR---LGTERGSVVVKWAVMILYS 194 (276)
Q Consensus 146 ~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~---lG~~~a~~l~~~l~~~ayl 194 (276)
.+...+.-..||.-|.|.|++++++ =|+. +.++.+......+..++.+
T Consensus 64 ~l~~~~~n~~NDy~D~d~D~~~~~~-Rpi~~G~is~~~a~~~~~~l~~~~~~ 114 (306)
T TIGR02056 64 PCLTGYTQTINDFYDRDIDAINEPY-RPIPSGAISEPEVITQIVLLFIAGIA 114 (306)
T ss_pred HHHHHHHHHHHhHhhhhhhccCCCC-CCCCCCccCHHHHHHHHHHHHHHHHH
Confidence 4555666789999999999988753 3333 4455555444444444433
No 59
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=91.59 E-value=2.4 Score=39.66 Aligned_cols=192 Identities=16% Similarity=0.097 Sum_probs=99.0
Q ss_pred HHHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCcccccc
Q 023826 53 AYLLLVLGF-IGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLC 131 (276)
Q Consensus 53 ~~~~l~~~~-lGl~l~~~~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~ 131 (276)
+++++..=. +|+.+ ..+-+|.-..+|..++...+.|+.-. |+.|.|- ..-+++|+....+|- -+..|+..
T Consensus 152 aI~fL~~ql~~gLgi--LlqLn~ysi~lg~~sl~~v~~ypl~k-r~TY~pq--~vLgltfnwGAllGw-~A~~g~~~--- 222 (353)
T KOG1381|consen 152 AIGFLGAQLSLGLGI--LLQLNWYSIALGASSLALVITYPLMK-RFTYWPQ--LVLGLTFNWGALLGW-CALKGSLS--- 222 (353)
T ss_pred HHHHHHHHHHHhHHH--HHhccHHHHHhcccccccEEEeehhh-hcchhHH--HHHhhhcchhhhhcc-hhhcCccC---
Confidence 444444444 35554 34668888999999999999998632 4555542 334567766655553 23333310
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHHHHHHHHHH-hhh-hhHHH
Q 023826 132 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGL-SRA-LPLSC 209 (276)
Q Consensus 132 ~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~-~g~-lP~~~ 209 (276)
+-....+.+|-..-.++---+. -..|.+.|.+.|.++.+.|+|++.-.++-.+-. .....+....+ .|. .|...
T Consensus 223 -~s~~~plYls~v~Wtl~YDTIY--AHQDK~dDvk~gvkSTALrfG~nTK~wl~gf~a-~~ia~La~aG~~s~q~~pyy~ 298 (353)
T KOG1381|consen 223 -PSAVLPLYLSGVCWTLIYDTIY--AHQDKRDDVKIGVKSTALRFGDNTKPWLSGFGA-AQIASLAAAGIASDQTWPYYA 298 (353)
T ss_pred -hhhhhHHHHhhhhhhhhhhhhh--hcccchhhhHhcchhhhhhcCCCCchHHhhhhH-HHHHHHHHhhhccCCCchHHH
Confidence 0011122223222222222222 357999999999999999999888776654422 22222222222 232 24443
Q ss_pred HHHHHhHHHHHHHHHHHHHhhccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023826 210 IFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARIL 265 (276)
Q Consensus 210 ll~~ll~lPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~~ll~igl~l~~~~ 265 (276)
.+ . -.+.+...+..+. + -++..++- .-.+-+.-.|+.+..|+.++.++
T Consensus 299 ~l----g-~~~~~L~~~i~~v-d-iDnp~dC~-k~f~sN~ntGli~~~~i~~d~ll 346 (353)
T KOG1381|consen 299 AL----G-AVAARLGSQIYKV-D-IDNPSDCW-KKFKSNSNTGLILFSGIVLDTLL 346 (353)
T ss_pred HH----H-HHHHHHHhheeee-e-cCChHHHH-HHHHhcCcchHHHHHHHHHHHHH
Confidence 21 1 1223444443332 1 11112121 12333445677777777776664
No 60
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=91.59 E-value=3.9 Score=37.41 Aligned_cols=53 Identities=15% Similarity=-0.117 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeec---hhhHHHHHHHHHHHH
Q 023826 139 LSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLG---TERGSVVVKWAVMIL 192 (276)
Q Consensus 139 ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG---~~~a~~l~~~l~~~a 192 (276)
++..+...+..++....||+-|+|.|+.+. ++=|..=| ++.+..+...+..++
T Consensus 41 ~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l~~~g 96 (276)
T PRK12882 41 GLAFAAVFLATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILLFAAG 96 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHHHHHH
Confidence 344445556677778899999999999754 44454444 455554444444444
No 61
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=91.17 E-value=7.2 Score=35.92 Aligned_cols=56 Identities=7% Similarity=-0.102 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC---cccc-eeechhhHHHHHHHHHHHHH
Q 023826 138 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK---MSPL-VRLGTERGSVVVKWAVMILY 193 (276)
Q Consensus 138 ~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk---~TL~-v~lG~~~a~~l~~~l~~~ay 193 (276)
.++..+...+..++-...||+-|+|-|+++.| |.+| =++.++.+......+..++.
T Consensus 38 ~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~ 97 (279)
T PRK12869 38 LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALGT 97 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHH
Confidence 34445555566777899999999999998664 3333 24455555444443433333
No 62
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=90.23 E-value=8.8 Score=35.80 Aligned_cols=54 Identities=7% Similarity=-0.040 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCc-c---cceeechhhHHHHHHHHHHH
Q 023826 138 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGKM-S---PLVRLGTERGSVVVKWAVMI 191 (276)
Q Consensus 138 ~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~-T---L~v~lG~~~a~~l~~~l~~~ 191 (276)
.++..+...+..++-+..||+-|+|-|+++-|+ . ..=++-++.|......+..+
T Consensus 39 l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~ 96 (286)
T PRK12895 39 ILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFIAI 96 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 334444555777778899999999999988433 2 22344455555444443333
No 63
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=90.12 E-value=9.2 Score=35.54 Aligned_cols=54 Identities=7% Similarity=0.020 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHhhHhcCC---cccc-eeechhhHHHHHHHHHHHHH
Q 023826 140 SASLLVGLTTSLILFCSHFHQVEGDRNVGK---MSPL-VRLGTERGSVVVKWAVMILY 193 (276)
Q Consensus 140 l~slp~~l~~~~ill~Nn~~D~e~D~~~Gk---~TL~-v~lG~~~a~~l~~~l~~~ay 193 (276)
+..+...+..++-...||+-|+|-|+++.| |.+| =++.++.+..+...+..++.
T Consensus 48 l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~g~ 105 (296)
T PRK04375 48 LTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVLGF 105 (296)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 344444566777788999999999998643 3332 34455555555544444443
No 64
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=90.06 E-value=5.8 Score=36.95 Aligned_cols=47 Identities=11% Similarity=-0.131 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccceeechhhHHHHH
Q 023826 139 LSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGTERGSVVV 185 (276)
Q Consensus 139 ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk-~TL~v~lG~~~a~~l~ 185 (276)
++..+...+..++-+..||+-|+|-|+++.| ++-|..=|+-..+...
T Consensus 48 ~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~ 95 (289)
T PLN02809 48 ALFGCGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGV 95 (289)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHH
Confidence 3444555577777889999999999998876 4667666764444443
No 65
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=89.94 E-value=7.6 Score=35.79 Aligned_cols=42 Identities=12% Similarity=0.006 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccceeechhh
Q 023826 139 LSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGTER 180 (276)
Q Consensus 139 ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk-~TL~v~lG~~~ 180 (276)
++..+...+..++-...||+-|+|-|+++.| ++=|..=|+-.
T Consensus 48 ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is 90 (285)
T PRK12847 48 VLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALS 90 (285)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcC
Confidence 3444445567777789999999999997655 23444445433
No 66
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=89.86 E-value=13 Score=34.86 Aligned_cols=50 Identities=4% Similarity=-0.142 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCCCChHhhHhcCC-cccce---eechhhHHHHHHHHHHHH
Q 023826 143 LLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLV---RLGTERGSVVVKWAVMIL 192 (276)
Q Consensus 143 lp~~l~~~~ill~Nn~~D~e~D~~~Gk-~TL~v---~lG~~~a~~l~~~l~~~a 192 (276)
+...+..++-...||+-|+|-|++..| +.=|. ++.++.+..+...+..++
T Consensus 54 lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~g 107 (306)
T PRK13362 54 IGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAG 107 (306)
T ss_pred HHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 455566777889999999999997654 23333 344444544444344444
No 67
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=89.40 E-value=9.6 Score=35.14 Aligned_cols=41 Identities=12% Similarity=-0.038 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccceeechhh
Q 023826 140 SASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGTER 180 (276)
Q Consensus 140 l~slp~~l~~~~ill~Nn~~D~e~D~~~Gk-~TL~v~lG~~~ 180 (276)
+..+...+..++-...||+-|+|-|+++.| ++=|.-=|+-.
T Consensus 44 ~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is 85 (281)
T TIGR01474 44 LFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVS 85 (281)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcC
Confidence 334444566677789999999999997655 23343335433
No 68
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=89.26 E-value=9.3 Score=35.05 Aligned_cols=56 Identities=13% Similarity=0.033 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccce-eechhhHHHHHHHHHHHHH
Q 023826 138 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLV-RLGTERGSVVVKWAVMILY 193 (276)
Q Consensus 138 ~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk-~TL~v-~lG~~~a~~l~~~l~~~ay 193 (276)
.++..+...+..++-...||+-|+|.|+++.+ |.+|. ++-++.+......+..++.
T Consensus 39 ~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~ 96 (279)
T PRK09573 39 IILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGL 96 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHH
Confidence 34445555677777888999999999997642 33332 4555666655555554444
No 69
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=88.04 E-value=6.7 Score=35.91 Aligned_cols=45 Identities=9% Similarity=-0.105 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCCChHhhHhcCCccccee---echhhHHHHHHHHHHH
Q 023826 146 GLTTSLILFCSHFHQVEGDRNVGKMSPLVR---LGTERGSVVVKWAVMI 191 (276)
Q Consensus 146 ~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~---lG~~~a~~l~~~l~~~ 191 (276)
.+..++....||+-|+|.|+.++ ++=|.. +-++.+......+..+
T Consensus 47 ~~~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~~ 94 (277)
T PRK12883 47 YLGCSGGNTINDYFDYEIDKINR-PNRPLPRGAMSRKAALYYSLLLFAV 94 (277)
T ss_pred HHHHHHHhHHHhhhhHhccccCC-CCCCCCCCccCHHHHHHHHHHHHHH
Confidence 34446678899999999999765 444444 4455555544444333
No 70
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=87.98 E-value=6.8 Score=36.42 Aligned_cols=20 Identities=10% Similarity=-0.024 Sum_probs=16.8
Q ss_pred HHhcCCCChHhhHhcCCccc
Q 023826 153 LFCSHFHQVEGDRNVGKMSP 172 (276)
Q Consensus 153 ll~Nn~~D~e~D~~~Gk~TL 172 (276)
...||+.|+|.||++.||..
T Consensus 62 y~iND~~D~D~Dr~~prk~~ 81 (282)
T PRK12875 62 YGVNDVFDADTDELNPKKDR 81 (282)
T ss_pred hcchhhhhhhccccCCCccC
Confidence 35799999999999888763
No 71
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=87.97 E-value=22 Score=32.76 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCCCChHhhHhcCCc-ccceeec---hhhHHHHHHHHHHHH
Q 023826 143 LLVGLTTSLILFCSHFHQVEGDRNVGKM-SPLVRLG---TERGSVVVKWAVMIL 192 (276)
Q Consensus 143 lp~~l~~~~ill~Nn~~D~e~D~~~Gk~-TL~v~lG---~~~a~~l~~~l~~~a 192 (276)
+...+..++-...||+-|+|-|+++.|. +=|.-=| ++.+...-..+..++
T Consensus 49 ~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~ 102 (282)
T PRK12848 49 LGVFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVA 102 (282)
T ss_pred HHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 3334566777899999999999865542 2333334 444444433333333
No 72
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=87.70 E-value=15 Score=34.58 Aligned_cols=42 Identities=5% Similarity=-0.049 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccceeechh
Q 023826 138 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGTE 179 (276)
Q Consensus 138 ~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk-~TL~v~lG~~ 179 (276)
.++..+...+.-++=+..||+-|+|-|+++-| ++=|.-=|+-
T Consensus 49 ~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~i 91 (300)
T PRK12876 49 ISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKLL 91 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCCC
Confidence 45667777778888889999999999999886 3444444653
No 73
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=87.02 E-value=22 Score=33.11 Aligned_cols=42 Identities=7% Similarity=-0.079 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccceeechh
Q 023826 138 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGTE 179 (276)
Q Consensus 138 ~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk-~TL~v~lG~~ 179 (276)
..+..+...+..++-...||+-|+|-|+++-| +.=|..=|+-
T Consensus 44 l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~i 86 (291)
T PRK12886 44 LDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLI 86 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCCc
Confidence 34445555566666778899999999998753 2234444533
No 74
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=86.73 E-value=4.3 Score=37.08 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHhhHhcCC
Q 023826 139 LSASLLVGLTTSLILFCSHFHQVEGDRNVGK 169 (276)
Q Consensus 139 ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk 169 (276)
+...+...+..++....||.-|+|.|+.+.+
T Consensus 39 ~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~ 69 (285)
T PRK12872 39 WLLLLITFLIAAAVYIINYLTDLEEDIINKP 69 (285)
T ss_pred HHHHHHHHHHHHHHHHhhhhcCCchhhcCCC
Confidence 3444455677778888999999999998655
No 75
>PRK13592 ubiA prenyltransferase; Provisional
Probab=85.97 E-value=10 Score=35.78 Aligned_cols=59 Identities=12% Similarity=0.064 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCc-ccc-eeechhhHHHHHHHHHHHHH
Q 023826 135 TATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKM-SPL-VRLGTERGSVVVKWAVMILY 193 (276)
Q Consensus 135 ~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~-TL~-v~lG~~~a~~l~~~l~~~ay 193 (276)
..+.++..+-..+.++.-...||+.|+|.||.+.-. -+| =++-++.++.+-..+.+.+.
T Consensus 45 ~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l 105 (299)
T PRK13592 45 GIQEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSV 105 (299)
T ss_pred chHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHH
Confidence 334455455555666778899999999999876432 222 24555666655544444433
No 76
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=85.68 E-value=9.7 Score=35.79 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=22.1
Q ss_pred HHhcCCCChHhhHhcCCccccee---echhhHHHHHHH
Q 023826 153 LFCSHFHQVEGDRNVGKMSPLVR---LGTERGSVVVKW 187 (276)
Q Consensus 153 ll~Nn~~D~e~D~~~Gk~TL~v~---lG~~~a~~l~~~ 187 (276)
.-.||+-|+|.|+.+ |.+.|+. +-++.++.+...
T Consensus 70 ~~iNd~~D~~iD~in-kp~rPiasG~ls~~~a~~~~~~ 106 (308)
T PRK12887 70 VGLNQLTDIEIDRIN-KPHLPLAAGEFSRRQGQRIVII 106 (308)
T ss_pred HHHhhhhhHHHHhcC-CCCCCcCCcccCHHHHHHHHHH
Confidence 339999999999965 5666653 444555444433
No 77
>PLN02776 prenyltransferase
Probab=85.65 E-value=17 Score=34.92 Aligned_cols=53 Identities=9% Similarity=-0.009 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccce---eechhhHHHHHHHHHH
Q 023826 138 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLV---RLGTERGSVVVKWAVM 190 (276)
Q Consensus 138 ~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk-~TL~v---~lG~~~a~~l~~~l~~ 190 (276)
..+..+...+..++-+..||+-|+|-|++..| +.=|. ++.++.|..+-..+..
T Consensus 31 l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l~~ 87 (341)
T PLN02776 31 LGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVGA 87 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 34455566677778889999999999988654 23333 4444444444333333
No 78
>PRK08238 hypothetical protein; Validated
Probab=85.48 E-value=14 Score=37.06 Aligned_cols=55 Identities=20% Similarity=0.146 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhhHhcC-Cccccee---echhhHHHHHHHHHHHH
Q 023826 138 VLSASLLVGLTTSLILFCSHFHQVEGDRNVG-KMSPLVR---LGTERGSVVVKWAVMIL 192 (276)
Q Consensus 138 ~ll~slp~~l~~~~ill~Nn~~D~e~D~~~G-k~TL~v~---lG~~~a~~l~~~l~~~a 192 (276)
.++..+..++..++....||+-|+|.||++- |+.=|.. +.++.|..+...+..++
T Consensus 228 ~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~ 286 (479)
T PRK08238 228 ALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAG 286 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3455556678888899999999999999984 3444543 44455554444444444
No 79
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=85.41 E-value=31 Score=31.97 Aligned_cols=32 Identities=9% Similarity=0.060 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC
Q 023826 138 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK 169 (276)
Q Consensus 138 ~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk 169 (276)
.++..+...+..++-...||+-|+|-|+++.|
T Consensus 41 ~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~R 72 (284)
T PRK12888 41 LLLVTVAMVGARTFAMAANRIIDREIDARNPR 72 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCC
Confidence 34455566677777889999999999998863
No 80
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=85.36 E-value=8.4 Score=35.80 Aligned_cols=40 Identities=10% Similarity=-0.117 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHhhHhcCCc-ccceeechh
Q 023826 140 SASLLVGLTTSLILFCSHFHQVEGDRNVGKM-SPLVRLGTE 179 (276)
Q Consensus 140 l~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~-TL~v~lG~~ 179 (276)
+..+...+..++-...||+-|+|-|+++.|. .=|.-=|+-
T Consensus 50 l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~i 90 (290)
T PRK12870 50 IIILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRL 90 (290)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCc
Confidence 3444455677777889999999999875542 344434443
No 81
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=85.17 E-value=31 Score=32.35 Aligned_cols=31 Identities=10% Similarity=-0.006 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhhHhcC
Q 023826 138 VLSASLLVGLTTSLILFCSHFHQVEGDRNVG 168 (276)
Q Consensus 138 ~ll~slp~~l~~~~ill~Nn~~D~e~D~~~G 168 (276)
.++..+...+..++-...||+-|+|-|+++-
T Consensus 51 l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~ 81 (300)
T PRK13106 51 LILIFLALFFLRTAGMTNDNLADLEIDAKNP 81 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhccccCCC
Confidence 3445556667777778899999999999874
No 82
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=84.98 E-value=31 Score=31.60 Aligned_cols=54 Identities=9% Similarity=0.016 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHhhHhcCC---cccce-eechhhHHHHHHHHHHHH
Q 023826 139 LSASLLVGLTTSLILFCSHFHQVEGDRNVGK---MSPLV-RLGTERGSVVVKWAVMIL 192 (276)
Q Consensus 139 ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk---~TL~v-~lG~~~a~~l~~~l~~~a 192 (276)
++..+...+..++-...||+-|+|.|+++.| |.+|- ++-++.+..+...+..++
T Consensus 38 ~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~g 95 (280)
T TIGR01473 38 LLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLG 95 (280)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 3444555577777889999999999998553 33333 444555555554444444
No 83
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=84.95 E-value=12 Score=34.73 Aligned_cols=40 Identities=8% Similarity=0.029 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHH-HhcCCCChHhhHhcCCcccce
Q 023826 135 TATVLSASLLVGLTTSLIL-FCSHFHQVEGDRNVGKMSPLV 174 (276)
Q Consensus 135 ~~~~ll~slp~~l~~~~il-l~Nn~~D~e~D~~~Gk~TL~v 174 (276)
+|..++.++......+.-| -.||.-|.|.|+.+.|+.=+.
T Consensus 32 ~~~~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~~ 72 (282)
T PRK13105 32 DWLFVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGVE 72 (282)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCCC
Confidence 3444444443333332222 569999999999998876553
No 84
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=84.73 E-value=13 Score=35.40 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=29.8
Q ss_pred HHHHHhcCCCChHhhHhcCCcccce---eechhhHHHHHHHHHHHHHHHH
Q 023826 150 SLILFCSHFHQVEGDRNVGKMSPLV---RLGTERGSVVVKWAVMILYSLL 196 (276)
Q Consensus 150 ~~ill~Nn~~D~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~~~ayl~~ 196 (276)
++-...||+-|+|.|+.++| |=|. ++-++.+......+..++.++.
T Consensus 64 ~a~~~iND~~D~~~D~~n~r-tRpl~~G~is~~~al~~~~~l~~la~~lg 112 (331)
T PRK12392 64 GFSQSVNDYFDLELDRVNEP-TRPIPSGRLSEKEALWNSIIVLLLAIGLG 112 (331)
T ss_pred HHHhHHhcceeecccccCCC-CCCCCcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 33467899999999997754 3333 4446666666666655554433
No 85
>PRK13591 ubiA prenyltransferase; Provisional
Probab=84.12 E-value=12 Score=35.34 Aligned_cols=47 Identities=17% Similarity=0.137 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC
Q 023826 113 PFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGK 169 (276)
Q Consensus 113 ~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk 169 (276)
.+....++..+..+ .+++ .++..++.+.+....||.-|+|.|+-+..
T Consensus 45 ~~~~~~a~lL~g~~-------~~~~---~~~~~~L~~~s~~~iNd~~D~eiD~IN~P 91 (307)
T PRK13591 45 ALRIHIAFLLLGLQ-------SSIL---TCIAGGLIIYSVYTLDRALDSEEDAVNRS 91 (307)
T ss_pred HHHHHHHHHHhCCC-------cchH---HHHHHHHHHHHHHHHhhhccchhhhccCc
Confidence 34445555555444 3433 35566778888899999999999987533
No 86
>PLN00012 chlorophyll synthetase; Provisional
Probab=84.11 E-value=13 Score=35.99 Aligned_cols=45 Identities=7% Similarity=-0.121 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCChHhhHhcCCcccce---eechhhHHHHHHHHHHHH
Q 023826 147 LTTSLILFCSHFHQVEGDRNVGKMSPLV---RLGTERGSVVVKWAVMIL 192 (276)
Q Consensus 147 l~~~~ill~Nn~~D~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~~~a 192 (276)
+...+.-..||+-|.|.|+++++ +=|+ ++.++.+......+..++
T Consensus 134 L~~~~an~iNDy~D~~iD~~~~~-~Rpi~sG~Is~~~al~~~~~l~~~~ 181 (375)
T PLN00012 134 FLTGYTQTINDWYDREIDAINEP-YRPIPSGAISENEVITQIWVLLLGG 181 (375)
T ss_pred HHHHHHHHHHCeecHhhhccCCC-CCCcCCCccCHHHHHHHHHHHHHHH
Confidence 44445567899999999988752 2333 344555554444444433
No 87
>PRK13595 ubiA prenyltransferase; Provisional
Probab=84.02 E-value=24 Score=33.10 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=17.5
Q ss_pred HHHHhcCCCChHhhHhcCCcc
Q 023826 151 LILFCSHFHQVEGDRNVGKMS 171 (276)
Q Consensus 151 ~ill~Nn~~D~e~D~~~Gk~T 171 (276)
.+--.||.-|+|.|++|-|+-
T Consensus 62 ~~~giND~fD~eiDa~Npr~~ 82 (292)
T PRK13595 62 LIYGLNDLADRETDAASPRKG 82 (292)
T ss_pred HHHHHHhhhhhhhhccCCCCC
Confidence 456789999999999887764
No 88
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=83.96 E-value=28 Score=32.75 Aligned_cols=31 Identities=6% Similarity=-0.156 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHhhHhcCC
Q 023826 139 LSASLLVGLTTSLILFCSHFHQVEGDRNVGK 169 (276)
Q Consensus 139 ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk 169 (276)
++..+...+..++-...||+-|+|-|++..|
T Consensus 75 ~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~R 105 (314)
T PRK12878 75 FLFFVGAIAMRGAGCTYNDIVDRDIDAKVAR 105 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 3344444466666788999999999987543
No 89
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=82.47 E-value=22 Score=33.28 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCCChHhhHhc-----C--------CcccceeechhhHHHHHHHHHHHHHHH
Q 023826 147 LTTSLILFCSHFHQVEGDRNV-----G--------KMSPLVRLGTERGSVVVKWAVMILYSL 195 (276)
Q Consensus 147 l~~~~ill~Nn~~D~e~D~~~-----G--------k~TL~v~lG~~~a~~l~~~l~~~ayl~ 195 (276)
+...+-...||+-|+|.|+.+ + |-...-++-+|.+..+...+.+++..+
T Consensus 52 l~~~ag~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l 113 (297)
T PRK12871 52 FGFEAGFVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSAL 113 (297)
T ss_pred HHHHHHHHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 333444589999999999753 1 111223555666666666655555443
No 90
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=77.47 E-value=11 Score=34.51 Aligned_cols=46 Identities=7% Similarity=-0.174 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCChHhhHhcCCcc-cce-eechhhHHHHHHHHHHHH
Q 023826 147 LTTSLILFCSHFHQVEGDRNVGKMS-PLV-RLGTERGSVVVKWAVMIL 192 (276)
Q Consensus 147 l~~~~ill~Nn~~D~e~D~~~Gk~T-L~v-~lG~~~a~~l~~~l~~~a 192 (276)
+...+.-..||.-|.|.|++++++. ++. ++-++.++.+...+..++
T Consensus 49 l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~is~~~a~~~~~~~~~~~ 96 (283)
T TIGR01476 49 LGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAG 96 (283)
T ss_pred HHHHHHHHHHhHhhhCcccCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 4445556889999999999876332 222 344555555554444333
No 91
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=77.08 E-value=12 Score=35.21 Aligned_cols=47 Identities=6% Similarity=-0.113 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCCChHhhHhcCCc-ccc-eeechhhHHHHHHHHHHHHH
Q 023826 147 LTTSLILFCSHFHQVEGDRNVGKM-SPL-VRLGTERGSVVVKWAVMILY 193 (276)
Q Consensus 147 l~~~~ill~Nn~~D~e~D~~~Gk~-TL~-v~lG~~~a~~l~~~l~~~ay 193 (276)
+...+.-..||+-|.|.|++++++ .++ =++.++.+......+..++.
T Consensus 76 l~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~ 124 (314)
T PRK07566 76 LLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGL 124 (314)
T ss_pred HHHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHH
Confidence 344556678999999999976532 222 25566666666555544443
No 92
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=73.62 E-value=38 Score=31.44 Aligned_cols=59 Identities=8% Similarity=-0.108 Sum_probs=32.3
Q ss_pred chHHHHHHH-HHHHHHHHHHHHhcCCCChHhhHhcCCcc----cce---eechhhHHHHHHHHHHHH
Q 023826 134 ITATVLSAS-LLVGLTTSLILFCSHFHQVEGDRNVGKMS----PLV---RLGTERGSVVVKWAVMIL 192 (276)
Q Consensus 134 ~~~~~ll~s-lp~~l~~~~ill~Nn~~D~e~D~~~Gk~T----L~v---~lG~~~a~~l~~~l~~~a 192 (276)
+++...+.. +...+.-.+.-..||.-|.|.|+.+.+|| =|. ++-++.+......+..++
T Consensus 37 f~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia 103 (296)
T PRK05951 37 FDPLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIA 103 (296)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHHHHHHHHHHHHHH
Confidence 455443333 34445666677899999977766665443 122 244555555544443444
No 93
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=73.23 E-value=79 Score=29.36 Aligned_cols=30 Identities=7% Similarity=0.040 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHhhHhcCC
Q 023826 140 SASLLVGLTTSLILFCSHFHQVEGDRNVGK 169 (276)
Q Consensus 140 l~slp~~l~~~~ill~Nn~~D~e~D~~~Gk 169 (276)
+..+...+..++-...||.-|+|-|+++-|
T Consensus 51 l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~R 80 (291)
T PRK12874 51 LGILAAVSARNFAMAFNRLVDRDIDKDNPR 80 (291)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccccCCCC
Confidence 333344455566678899999999998853
No 94
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=57.05 E-value=1.5e+02 Score=27.82 Aligned_cols=68 Identities=6% Similarity=-0.082 Sum_probs=34.9
Q ss_pred chHHHHHHHHHH-HHHHHHHHHhcCCCChHhhHhcCC-----cccc-eeechhhHHHHHHHHHHHHHHHHHHHHH
Q 023826 134 ITATVLSASLLV-GLTTSLILFCSHFHQVEGDRNVGK-----MSPL-VRLGTERGSVVVKWAVMILYSLLFAIGL 201 (276)
Q Consensus 134 ~~~~~ll~slp~-~l~~~~ill~Nn~~D~e~D~~~Gk-----~TL~-v~lG~~~a~~l~~~l~~~ayl~~~~~~~ 201 (276)
+++...++++.. .+.-...=..||.-|.+.|....+ |+++ -.+-+|..+..-..+..++.+.-+.++.
T Consensus 36 ~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~ 110 (317)
T PRK13387 36 FDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNGIGQHGLKPRNVLTVILLMYVVAAILGVYLCM 110 (317)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcchhccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455444444333 335555668899999887665532 2221 2233445555555555555444333433
No 95
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=52.90 E-value=2.1e+02 Score=27.16 Aligned_cols=88 Identities=11% Similarity=-0.033 Sum_probs=46.4
Q ss_pred chHHHHHHHH-HHHHHHHHHHHhcCCCChHhhHhcC----CcccceeechhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 023826 134 ITATVLSASL-LVGLTTSLILFCSHFHQVEGDRNVG----KMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLS 208 (276)
Q Consensus 134 ~~~~~ll~sl-p~~l~~~~ill~Nn~~D~e~D~~~G----k~TL~v~lG~~~a~~l~~~l~~~ayl~~~~~~~~g~lP~~ 208 (276)
.++..++.++ -..+.+.+---.||.-|+|-|++-. |-+..=++-++.+...=..+..++..++..+ .+|..
T Consensus 49 ~~~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~----vn~la 124 (304)
T COG0109 49 INPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLLWFL----VNLLA 124 (304)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 3444333333 3345555556789999999997654 3444555666666555444544444333222 23444
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 023826 209 CIFLCAMTSPIGKLVVSY 226 (276)
Q Consensus 209 ~ll~~ll~lPla~~~~~~ 226 (276)
..+ .+.++-.-.-.+-.
T Consensus 125 a~l-~~~gi~~Yv~vYT~ 141 (304)
T COG0109 125 AVL-GLFGIFFYVVVYTL 141 (304)
T ss_pred HHH-HHHHHHHHhhhhhh
Confidence 434 35665544444444
No 96
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=50.54 E-value=97 Score=28.38 Aligned_cols=51 Identities=8% Similarity=-0.111 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhcCCCChHh--hHh--c-CCcccce-eechhhHHHHHHHHHHHH
Q 023826 142 SLLVGLTTSLILFCSHFHQVEG--DRN--V-GKMSPLV-RLGTERGSVVVKWAVMIL 192 (276)
Q Consensus 142 slp~~l~~~~ill~Nn~~D~e~--D~~--~-Gk~TL~v-~lG~~~a~~l~~~l~~~a 192 (276)
.+...+...+....||.-|.|. |++ . ++|+++- ++-++.+......+..++
T Consensus 44 ~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G~is~~~~~~~~~~~~~~~ 100 (293)
T PRK06080 44 LLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRGGISPKQVKRAAIAFFGLA 100 (293)
T ss_pred HHHHHHHHHHHHHHHhHHHhccCCCcccccCCcccccCCCCCHHHHHHHHHHHHHHH
Confidence 3344456666788999999853 532 2 2233321 233455554444444333
No 97
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=48.95 E-value=2.2e+02 Score=26.34 Aligned_cols=33 Identities=15% Similarity=0.134 Sum_probs=19.2
Q ss_pred chHHHHHHHHHH-HHHHHHHHHhcCCCChHh--hHh
Q 023826 134 ITATVLSASLLV-GLTTSLILFCSHFHQVEG--DRN 166 (276)
Q Consensus 134 ~~~~~ll~slp~-~l~~~~ill~Nn~~D~e~--D~~ 166 (276)
+++...++++.. .+.-.+.=+.||.-|.+. |++
T Consensus 32 f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~ 67 (285)
T TIGR02235 32 FHLDRFALFLIAAILILAWINLTNDVFDSDTGIDRF 67 (285)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcc
Confidence 555544444333 233344457899999777 663
No 98
>PLN02878 homogentisate phytyltransferase
Probab=46.28 E-value=1.2e+02 Score=28.43 Aligned_cols=33 Identities=18% Similarity=0.017 Sum_probs=24.1
Q ss_pred HHHHHHH--HHhcCCCChHhhHhcCCcccceeechh
Q 023826 146 GLTTSLI--LFCSHFHQVEGDRNVGKMSPLVRLGTE 179 (276)
Q Consensus 146 ~l~~~~i--ll~Nn~~D~e~D~~~Gk~TL~v~lG~~ 179 (276)
.++..|+ .=.||.-|+|-|| .+|-..|.-=|+=
T Consensus 31 ~~l~~niyivglNd~~D~EIDk-INkP~rPIpSG~i 65 (280)
T PLN02878 31 PALLMNIYIVGLNQLYDIEIDK-VNKPYLPLASGEF 65 (280)
T ss_pred HHHhhhhheechhhhhhhcccc-cCCCCCCCCCCCC
Confidence 3444554 3479999999995 6788888877753
No 99
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=42.82 E-value=2.8e+02 Score=25.69 Aligned_cols=30 Identities=13% Similarity=0.004 Sum_probs=19.2
Q ss_pred chHHHHHHHHHH-HHHHHHHHHhcCCCChHh
Q 023826 134 ITATVLSASLLV-GLTTSLILFCSHFHQVEG 163 (276)
Q Consensus 134 ~~~~~ll~slp~-~l~~~~ill~Nn~~D~e~ 163 (276)
+++...+.++.. .+.-...-+.||.-|.+.
T Consensus 25 f~~~~~ll~~~~~~~~q~~~N~~NDy~D~~~ 55 (284)
T TIGR00751 25 FVWLVALLALATAVLLQILSNYANDYGDGIK 55 (284)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 566655444443 355556678999999854
No 100
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=36.85 E-value=3.4e+02 Score=25.45 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=18.8
Q ss_pred chHHHHHHHHHHH-HHHHHHHHhcCCCChH--hhHh
Q 023826 134 ITATVLSASLLVG-LTTSLILFCSHFHQVE--GDRN 166 (276)
Q Consensus 134 ~~~~~ll~slp~~-l~~~~ill~Nn~~D~e--~D~~ 166 (276)
+++...++++..+ +.-...=..||.-|.+ .|++
T Consensus 45 f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~ 80 (304)
T PRK07419 45 FRLDQFITFLLAAILILAWENLSNDVFDADTGIDKN 80 (304)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 4555444443333 3333445789999988 4664
No 101
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=33.18 E-value=17 Score=31.88 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.0
Q ss_pred HHHHhcCCCChHhhH----------hcCCcccceeec
Q 023826 151 LILFCSHFHQVEGDR----------NVGKMSPLVRLG 177 (276)
Q Consensus 151 ~ill~Nn~~D~e~D~----------~~Gk~TL~v~lG 177 (276)
+.-+.|+++|+.+|. +.||.|+|....
T Consensus 161 a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~ 197 (236)
T cd00867 161 AFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILA 197 (236)
T ss_pred HHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHH
Confidence 346889999998887 899999998877
No 102
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=28.23 E-value=1.6e+02 Score=22.86 Aligned_cols=34 Identities=12% Similarity=-0.001 Sum_probs=21.5
Q ss_pred HHhhhhhhhcccCCcceeeeecccCCHHHHHHHHHHHHHHHH
Q 023826 20 FLLFCPSVLYSKESHWLVISFVLLGSRTGTLVTAYLLLVLGF 61 (276)
Q Consensus 20 ~~~f~~~~~~~~~~~~~~~~~n~~g~~~~v~~~~~~~l~~~~ 61 (276)
.-+.+|.++|+|++..- ..+.-+.+.+.|+++|+
T Consensus 24 ~ACIFAfidFSK~~s~~--------~~~~wRalSii~FIlG~ 57 (91)
T PHA02680 24 AACVFAFVDFSKNTSNV--------TDYVWRALSVTCFIVGA 57 (91)
T ss_pred HHHHHhhhhhhccCCCC--------cchhHHHHHHHHHHHHH
Confidence 34667888888876421 11345667777877776
No 103
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=26.64 E-value=52 Score=22.48 Aligned_cols=30 Identities=3% Similarity=-0.105 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhcCCCChHhhHhcCCccc
Q 023826 143 LLVGLTTSLILFCSHFHQVEGDRNVGKMSP 172 (276)
Q Consensus 143 lp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL 172 (276)
+...++..=.+..|+++|.++|-..|.=+.
T Consensus 12 iv~~Cl~lyl~ald~~CDQg~~F~~GIC~i 41 (47)
T PRK10299 12 VVLACLLLWAQVFNMMCDQDVQFFSGICAI 41 (47)
T ss_pred HHHHHHHHHHHHHHHHhcCCccceeeeeee
Confidence 333344445567799999999998886543
No 104
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=25.82 E-value=1.4e+02 Score=25.99 Aligned_cols=68 Identities=12% Similarity=-0.017 Sum_probs=42.5
Q ss_pred HHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHhHHHHHH
Q 023826 153 LFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMI---LYSLLFAIGLSRALPLSCIFLCAMTSPIGK 221 (276)
Q Consensus 153 ll~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~---ayl~~~~~~~~g~lP~~~ll~~ll~lPla~ 221 (276)
+-.||.+-.+.|.+...-|.-=..-+.+...++.....+ +++.+++-.......+|.+.+.+++ |+|=
T Consensus 53 f~~r~y~v~~~d~~~~~itFeG~V~pS~~lA~fLt~l~~~Gl~cl~LVL~~l~P~~g~~~~~L~lLs-PlAG 123 (173)
T PF12046_consen 53 FEQRNYRVAEGDAEGEVITFEGFVAPSWFLAIFLTFLAAIGLACLGLVLSILFPDLGWWPLLLVLLS-PLAG 123 (173)
T ss_pred HHhcCceecccCccccEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHh-hhhh
Confidence 557899999999999998888888888877777554433 2223333333323333433333444 8884
No 105
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.40 E-value=3.1e+02 Score=21.66 Aligned_cols=30 Identities=7% Similarity=0.188 Sum_probs=20.5
Q ss_pred hhchHHHHHHHHHHHHHheeeccCCcccccc
Q 023826 70 EAGNLRAIMLLTCAVICGYIYQCPPFRLSYQ 100 (276)
Q Consensus 70 ~~~g~~~l~~g~i~~l~~~~YS~~P~~l~y~ 100 (276)
-+-++.+.++| .|+.+...-+-||.|+-+|
T Consensus 47 Qqls~tvy~vg-~~~v~t~li~LPpwP~y~r 76 (101)
T KOG4112|consen 47 QQLSVTVYIVG-AGFVFTLLITLPPWPWYRR 76 (101)
T ss_pred HHHHHHHHHHH-HHHHHHHHhcCCCchhhhc
Confidence 34466666666 4556777789999998655
No 106
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=22.63 E-value=4.3e+02 Score=23.54 Aligned_cols=93 Identities=19% Similarity=0.070 Sum_probs=50.1
Q ss_pred cccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCC--hHhhHhcCCcccce
Q 023826 97 LSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQ--VEGDRNVGKMSPLV 174 (276)
Q Consensus 97 l~y~glGE~~v~l~fG~l~~~g~~~v~~~~~~~~~~~~~~~~ll~slp~~l~~~~ill~Nn~~D--~e~D~~~Gk~TL~v 174 (276)
+..|.-+++...+.|....+....+....+.+.....-+...|+.++-.+....+-++.+|.+| .|.-.-++..--.+
T Consensus 8 l~~r~~~~~~~~llF~l~vi~lf~la~gp~~~~l~~~apgilWva~lfa~ll~l~rlF~~d~e~g~Le~lll~p~~~~~i 87 (211)
T TIGR01190 8 LAFRAGGGILNPLWFFLIVVTLFPFGVGPELKLLSRIAPGIVWVGALLSSLLSLDRLFRDDFEDGSLDLLMLSPTPLELT 87 (211)
T ss_pred HHHcccchHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcHHHHHhCCCChHHH
Confidence 3445555666666666555555545444421100000112234444455566666667776666 45555555666777
Q ss_pred eechhhHHHHHHHHH
Q 023826 175 RLGTERGSVVVKWAV 189 (276)
Q Consensus 175 ~lG~~~a~~l~~~l~ 189 (276)
.+||--+.++.....
T Consensus 88 ~l~K~la~wl~~~l~ 102 (211)
T TIGR01190 88 VLAKVLAHWLVTGLP 102 (211)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888887775533
No 107
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.38 E-value=5.4e+02 Score=22.65 Aligned_cols=71 Identities=13% Similarity=0.188 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchH---HHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023826 50 LVTAYLLLVLGFIGLTWASVEAGNL---RAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG 124 (276)
Q Consensus 50 ~~~~~~~l~~~~lGl~l~~~~~~g~---~~l~~g~i~~l~~~~YS~~P~~l~y~glGE~~v~l~fG~l~~~g~~~v~~ 124 (276)
++.-+.+..+.++++.+ .+.+ ..+...+.+-+.-|++...|+.+..+=..|=-+.+....+.+...++...
T Consensus 69 F~~NY~~iv~~~~~~sL----i~~P~~Livl~~lv~~w~~LY~~rd~pLvlfgr~i~d~~~l~~L~~~ti~~lflt~~ 142 (187)
T KOG3142|consen 69 FRVNYVIIVAILLFLSL----ITHPLSLIVLLALVAAWLFLYFLRDEPLVLFGRQISDREVLIGLVLITIPVLFLTSA 142 (187)
T ss_pred HHHhHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHheeeecCCCeEEeeEEecCcchhhhHHHHHHHHHHHhhH
Confidence 44555555555555543 2333 22233333444455566667777666665443333333333333344333
No 108
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=22.01 E-value=5.5e+02 Score=22.61 Aligned_cols=31 Identities=3% Similarity=-0.325 Sum_probs=15.8
Q ss_pred HHhhhhh-HHHHHHHHhHHHHHHHHHHHHHhh
Q 023826 200 GLSRALP-LSCIFLCAMTSPIGKLVVSYVEEN 230 (276)
Q Consensus 200 ~~~g~lP-~~~ll~~ll~lPla~~~~~~~~~~ 230 (276)
...|..+ ...++...++++..+..++...+.
T Consensus 75 ~~~gin~~~~ll~g~~~~L~~~i~~wk~~~~~ 106 (205)
T PF07895_consen 75 SQLGINLHLFLLAGLILSLYLYIFSWKKQMIR 106 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555 322222245566666666666444
Done!