Query 023826
Match_columns 276
No_of_seqs 166 out of 1176
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 13:26:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023826.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023826hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0g_A Farnesyl diphosphate sy 22.7 19 0.00065 32.4 0.1 40 153-192 213-263 (297)
2 3d31_C Sulfate/molybdate ABC t 21.9 3.7E+02 0.013 22.9 8.7 15 254-268 98-112 (295)
3 3kra_B Geranyl diphosphate syn 20.0 2.8E+02 0.0096 24.1 7.3 55 139-193 63-117 (274)
4 2i68_A Protein EMRE; transmemb 14.9 1.7E+02 0.0059 22.9 4.2 30 96-125 50-81 (137)
5 4hd1_A Squalene synthase HPNC; 14.2 46 0.0016 29.4 0.6 25 150-174 163-187 (294)
6 3lom_A Geranyltranstransferase 14.2 38 0.0013 30.6 0.0 40 153-192 227-277 (313)
7 3lsn_A Geranyltranstransferase 13.6 36 0.0012 30.6 -0.3 40 153-192 220-270 (304)
8 4f62_A Geranyltranstransferase 13.6 35 0.0012 30.9 -0.3 38 153-190 219-267 (317)
9 3ts7_A Geranyltranstransferase 13.6 38 0.0013 30.8 -0.1 30 163-192 247-276 (324)
10 3p8r_A Geranyltranstransferase 13.5 34 0.0012 30.7 -0.5 27 162-188 246-272 (302)
No 1
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=22.73 E-value=19 Score=32.36 Aligned_cols=40 Identities=20% Similarity=0.126 Sum_probs=23.6
Q ss_pred HHhcCCCChHh-----------hHhcCCcccceeechhhHHHHHHHHHHHH
Q 023826 153 LFCSHFHQVEG-----------DRNVGKMSPLVRLGTERGSVVVKWAVMIL 192 (276)
Q Consensus 153 ll~Nn~~D~e~-----------D~~~Gk~TL~v~lG~~~a~~l~~~l~~~a 192 (276)
-+.+|+-|..+ |.+.||.|+|+.+|.+.|+....-..--+
T Consensus 213 QI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A 263 (297)
T 3m0g_A 213 QIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEA 263 (297)
T ss_dssp HHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 56789988754 67889999999999999988765544333
No 2
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=21.91 E-value=3.7e+02 Score=22.87 Aligned_cols=15 Identities=40% Similarity=0.348 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhccc
Q 023826 254 ALVAGLITARILVTK 268 (276)
Q Consensus 254 ll~igl~l~~~~~~~ 268 (276)
...+|+.++....++
T Consensus 98 ~~~lg~~~a~~l~~~ 112 (295)
T 3d31_C 98 ALLLGAPTGYILARF 112 (295)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcc
Confidence 344566666666543
No 3
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=19.98 E-value=2.8e+02 Score=24.14 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHH
Q 023826 139 LSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILY 193 (276)
Q Consensus 139 ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ay 193 (276)
.-++..+=++=++-++-.|+++.|+|.+-||-|.=.+.|.+.|...=-.+...++
T Consensus 63 ~~~A~aiEliH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af 117 (274)
T 3kra_B 63 MAAAAAIHLVHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGF 117 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHH
Confidence 3445566677777788899995555667999999999999876543333333333
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=14.91 E-value=1.7e+02 Score=22.87 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=12.3
Q ss_pred ccccccchHHHHH-hhhhHHHHH-HHHHHhcC
Q 023826 96 RLSYQGLGEPLCF-AAFGPFATT-AFYLLLGS 125 (276)
Q Consensus 96 ~l~y~glGE~~v~-l~fG~l~~~-g~~~v~~~ 125 (276)
-+++.|.+-.... -+.|++.+. .+++....
T Consensus 50 alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE 81 (137)
T 2i68_A 50 TLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQ 81 (137)
T ss_dssp HHC-----CHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhCChhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4667777766554 466666553 33444433
No 5
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=14.24 E-value=46 Score=29.42 Aligned_cols=25 Identities=12% Similarity=0.339 Sum_probs=21.9
Q ss_pred HHHHHhcCCCChHhhHhcCCcccce
Q 023826 150 SLILFCSHFHQVEGDRNVGKMSPLV 174 (276)
Q Consensus 150 ~~ill~Nn~~D~e~D~~~Gk~TL~v 174 (276)
.+.-++|-+||+.+|.+.||.-+|.
T Consensus 163 ~AlQltNilRDv~eD~~~gR~YlP~ 187 (294)
T 4hd1_A 163 TALQVANHMQDIDRDLALGRIYVPR 187 (294)
T ss_dssp HHHHHHHHHHTHHHHHHTTCBCSCH
T ss_pred HHHHHHHHHHhchhhhccCceeCCH
Confidence 4567889999999999999999984
No 6
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=14.17 E-value=38 Score=30.61 Aligned_cols=40 Identities=8% Similarity=-0.002 Sum_probs=24.6
Q ss_pred HHhcCCCChH-----------hhHhcCCcccceeechhhHHHHHHHHHHHH
Q 023826 153 LFCSHFHQVE-----------GDRNVGKMSPLVRLGTERGSVVVKWAVMIL 192 (276)
Q Consensus 153 ll~Nn~~D~e-----------~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~a 192 (276)
-+.+|+-|.. +|.+.||.|+|+.+|.+.|+....-..--+
T Consensus 227 QI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A 277 (313)
T 3lom_A 227 QMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIA 277 (313)
T ss_dssp HHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666654 477899999999999999987765544433
No 7
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=13.63 E-value=36 Score=30.59 Aligned_cols=40 Identities=15% Similarity=-0.080 Sum_probs=24.4
Q ss_pred HHhcCCCChH-----------hhHhcCCcccceeechhhHHHHHHHHHHHH
Q 023826 153 LFCSHFHQVE-----------GDRNVGKMSPLVRLGTERGSVVVKWAVMIL 192 (276)
Q Consensus 153 ll~Nn~~D~e-----------~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~a 192 (276)
-+.+|+-|.. +|.+.||.|+|+.+|.+.|+....-..--+
T Consensus 220 QI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A 270 (304)
T 3lsn_A 220 QVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQA 270 (304)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777764 477889999999999999987765544443
No 8
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=13.61 E-value=35 Score=30.90 Aligned_cols=38 Identities=13% Similarity=0.034 Sum_probs=24.0
Q ss_pred HHhcCCCCh-----------HhhHhcCCcccceeechhhHHHHHHHHHH
Q 023826 153 LFCSHFHQV-----------EGDRNVGKMSPLVRLGTERGSVVVKWAVM 190 (276)
Q Consensus 153 ll~Nn~~D~-----------e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~ 190 (276)
-+.+|+-|+ -+|.+.||.|+|+.+|.+.|+..-.-..-
T Consensus 219 QI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~ 267 (317)
T 4f62_A 219 QVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHE 267 (317)
T ss_dssp HHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 445666565 35788899999999999999877654443
No 9
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=13.58 E-value=38 Score=30.82 Aligned_cols=30 Identities=17% Similarity=-0.010 Sum_probs=18.2
Q ss_pred hhHhcCCcccceeechhhHHHHHHHHHHHH
Q 023826 163 GDRNVGKMSPLVRLGTERGSVVVKWAVMIL 192 (276)
Q Consensus 163 ~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~a 192 (276)
+|.+.||.|+|+.+|.+.|+..-.-..--+
T Consensus 247 ~Dl~egK~T~p~l~gle~a~~~a~~~~~~A 276 (324)
T 3ts7_A 247 KDRDHNKPNYPALLGLSGAKEKAEEMHEAA 276 (324)
T ss_dssp ------CCCHHHHHCHHHHHHHHHHHHHHH
T ss_pred chhhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999988887665444333
No 10
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=13.55 E-value=34 Score=30.71 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=15.7
Q ss_pred HhhHhcCCcccceeechhhHHHHHHHH
Q 023826 162 EGDRNVGKMSPLVRLGTERGSVVVKWA 188 (276)
Q Consensus 162 e~D~~~Gk~TL~v~lG~~~a~~l~~~l 188 (276)
-+|.+.||.|+|+.+|.+.++..-.-.
T Consensus 246 g~Dl~egK~T~p~l~~l~~a~~~a~~~ 272 (302)
T 3p8r_A 246 GSDQELNKSTYPALLGLEGAQQKAHTL 272 (302)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHH
T ss_pred chHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 357789999999999988877655433
Done!