Query 023827
Match_columns 276
No_of_seqs 235 out of 2394
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:56:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1071 AcoA Pyruvate/2-oxoglu 100.0 4.1E-69 8.9E-74 492.2 26.5 262 13-274 2-268 (358)
2 CHL00149 odpA pyruvate dehydro 100.0 7.7E-61 1.7E-65 442.4 27.9 245 30-274 14-266 (341)
3 PLN02269 Pyruvate dehydrogenas 100.0 8.5E-61 1.8E-65 443.9 26.9 241 31-274 25-266 (362)
4 TIGR03182 PDH_E1_alph_y pyruva 100.0 2.2E-60 4.8E-65 435.8 25.4 240 35-274 1-241 (315)
5 KOG1182 Branched chain alpha-k 100.0 2.2E-61 4.7E-66 425.3 16.9 274 1-274 51-325 (432)
6 PLN02374 pyruvate dehydrogenas 100.0 4.2E-59 9.1E-64 440.5 28.2 246 29-274 79-332 (433)
7 TIGR03181 PDH_E1_alph_x pyruva 100.0 4.5E-58 9.8E-63 424.5 28.2 253 13-274 1-253 (341)
8 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 7.9E-58 1.7E-62 415.5 25.2 234 41-274 1-235 (293)
9 KOG0225 Pyruvate dehydrogenase 100.0 6.2E-57 1.3E-61 400.1 20.5 256 11-273 37-293 (394)
10 PF00676 E1_dh: Dehydrogenase 100.0 5.6E-56 1.2E-60 404.0 22.4 233 42-275 1-233 (300)
11 cd02016 TPP_E1_OGDC_like Thiam 100.0 2.4E-46 5.1E-51 332.1 19.9 222 51-275 1-254 (265)
12 PRK09404 sucA 2-oxoglutarate d 100.0 5.2E-45 1.1E-49 368.5 25.6 240 32-274 185-455 (924)
13 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 1.7E-39 3.7E-44 327.4 24.3 242 30-274 183-456 (929)
14 COG3959 Transketolase, N-termi 100.0 1.7E-34 3.7E-39 245.5 20.7 218 38-268 7-242 (243)
15 PRK12315 1-deoxy-D-xylulose-5- 100.0 5.9E-34 1.3E-38 280.1 21.8 224 29-274 11-250 (581)
16 cd02012 TPP_TK Thiamine pyroph 100.0 1.3E-29 2.7E-34 226.3 21.2 167 99-274 66-234 (255)
17 PRK12754 transketolase; Review 100.0 2.4E-29 5.3E-34 249.3 22.1 213 48-273 11-252 (663)
18 PF00456 Transketolase_N: Tran 100.0 7.9E-30 1.7E-34 234.4 16.1 215 47-274 7-250 (332)
19 TIGR00232 tktlase_bact transke 100.0 4.9E-29 1.1E-33 248.0 22.0 214 48-274 7-249 (653)
20 cd02007 TPP_DXS Thiamine pyrop 100.0 3.9E-29 8.5E-34 214.6 17.2 168 86-272 24-195 (195)
21 PRK12753 transketolase; Review 100.0 1.1E-28 2.3E-33 245.8 20.8 167 98-274 73-253 (663)
22 cd02017 TPP_E1_EcPDC_like Thia 100.0 5.2E-28 1.1E-32 223.7 22.0 182 82-274 49-324 (386)
23 PTZ00089 transketolase; Provis 100.0 1.3E-27 2.8E-32 238.2 21.6 177 87-273 59-255 (661)
24 PRK05899 transketolase; Review 100.0 3.4E-27 7.3E-32 234.6 22.7 176 87-274 61-255 (624)
25 PLN02790 transketolase 100.0 2.3E-27 4.9E-32 236.2 20.9 178 87-274 47-245 (654)
26 PRK05444 1-deoxy-D-xylulose-5- 100.0 2.4E-27 5.2E-32 233.7 19.7 226 28-273 14-248 (580)
27 TIGR00759 aceE pyruvate dehydr 99.9 4E-26 8.6E-31 227.5 22.4 188 77-273 115-394 (885)
28 PRK12270 kgd alpha-ketoglutara 99.9 2.1E-26 4.7E-31 228.5 19.1 262 9-274 462-760 (1228)
29 TIGR00204 dxs 1-deoxy-D-xylulo 99.9 3.6E-26 7.9E-31 226.3 20.4 226 29-274 9-281 (617)
30 TIGR03186 AKGDH_not_PDH alpha- 99.9 2.4E-25 5.3E-30 224.0 24.3 247 12-273 54-394 (889)
31 PRK13012 2-oxoacid dehydrogena 99.9 9.9E-25 2.1E-29 220.4 23.4 245 12-273 68-408 (896)
32 cd02011 TPP_PK Thiamine pyroph 99.9 9.4E-26 2E-30 196.0 13.0 183 71-270 2-206 (227)
33 PLN02234 1-deoxy-D-xylulose-5- 99.9 1.3E-24 2.9E-29 213.9 21.0 185 79-274 118-328 (641)
34 PRK12571 1-deoxy-D-xylulose-5- 99.9 2.9E-24 6.4E-29 213.4 21.2 227 28-273 16-289 (641)
35 PRK09405 aceE pyruvate dehydro 99.9 7.1E-24 1.5E-28 213.5 23.4 227 35-272 77-399 (891)
36 COG0021 TktA Transketolase [Ca 99.9 4.3E-24 9.3E-29 205.3 20.5 215 46-274 11-255 (663)
37 KOG0523 Transketolase [Carbohy 99.9 9.3E-24 2E-28 201.0 21.1 218 44-274 13-248 (632)
38 PLN02582 1-deoxy-D-xylulose-5- 99.9 1.3E-23 2.9E-28 208.4 20.6 228 29-274 42-327 (677)
39 KOG0451 Predicted 2-oxoglutara 99.9 2.9E-22 6.3E-27 188.6 14.1 244 29-275 150-433 (913)
40 PRK05261 putative phosphoketol 99.9 7.4E-21 1.6E-25 189.7 17.2 201 64-271 49-287 (785)
41 COG0567 SucA 2-oxoglutarate de 99.8 5.5E-20 1.2E-24 183.0 19.3 261 11-275 146-439 (906)
42 cd02013 TPP_Xsc_like Thiamine 99.8 1.4E-20 3E-25 161.7 10.1 123 141-272 51-184 (196)
43 cd02004 TPP_BZL_OCoD_HPCL Thia 99.8 3.6E-20 7.8E-25 155.7 12.2 114 141-266 46-171 (172)
44 cd00568 TPP_enzymes Thiamine p 99.8 5E-20 1.1E-24 153.3 10.8 116 139-266 42-168 (168)
45 cd02006 TPP_Gcl Thiamine pyrop 99.8 5E-20 1.1E-24 159.0 10.6 123 141-271 55-198 (202)
46 KOG0450 2-oxoglutarate dehydro 99.8 8.2E-19 1.8E-23 168.8 17.1 242 30-275 243-515 (1017)
47 cd02002 TPP_BFDC Thiamine pyro 99.8 2.4E-19 5.3E-24 151.3 11.2 112 143-266 49-178 (178)
48 cd02014 TPP_POX Thiamine pyrop 99.8 3.3E-19 7.2E-24 150.8 11.6 118 141-270 49-176 (178)
49 cd02015 TPP_AHAS Thiamine pyro 99.8 6.4E-19 1.4E-23 150.0 12.3 118 142-271 49-178 (186)
50 cd02003 TPP_IolD Thiamine pyro 99.8 5E-19 1.1E-23 153.1 10.8 119 141-271 46-188 (205)
51 cd02010 TPP_ALS Thiamine pyrop 99.8 5.8E-19 1.3E-23 149.3 11.0 117 141-269 46-172 (177)
52 cd03371 TPP_PpyrDC Thiamine py 99.8 1E-18 2.2E-23 149.2 12.4 119 141-271 46-167 (188)
53 cd02008 TPP_IOR_alpha Thiamine 99.8 2.8E-18 6E-23 145.2 13.3 117 141-266 49-176 (178)
54 cd02001 TPP_ComE_PpyrDC Thiami 99.8 1.2E-18 2.7E-23 144.6 10.4 114 142-268 41-156 (157)
55 PF13292 DXP_synthase_N: 1-deo 99.8 1.2E-18 2.5E-23 153.4 10.4 218 29-266 9-270 (270)
56 PRK06163 hypothetical protein; 99.8 2.1E-18 4.6E-23 148.8 11.1 117 142-270 56-176 (202)
57 cd03372 TPP_ComE Thiamine pyro 99.8 2.2E-18 4.7E-23 146.1 10.9 116 142-271 41-159 (179)
58 TIGR03846 sulfopy_beta sulfopy 99.8 3.3E-18 7.1E-23 145.3 11.3 115 142-270 41-159 (181)
59 PRK11864 2-ketoisovalerate fer 99.8 8.3E-18 1.8E-22 152.2 14.1 167 93-266 14-206 (300)
60 COG1154 Dxs Deoxyxylulose-5-ph 99.8 1.6E-17 3.5E-22 159.4 16.7 227 28-274 12-286 (627)
61 PF02775 TPP_enzyme_C: Thiamin 99.8 1.3E-18 2.8E-23 143.5 8.1 114 141-264 26-153 (153)
62 cd02005 TPP_PDC_IPDC Thiamine 99.7 1E-17 2.3E-22 142.4 11.7 121 141-272 48-179 (183)
63 PRK07524 hypothetical protein; 99.7 6.8E-18 1.5E-22 165.3 11.7 118 142-271 406-533 (535)
64 cd02009 TPP_SHCHC_synthase Thi 99.7 1E-17 2.3E-22 141.4 9.0 112 142-266 50-174 (175)
65 PRK08327 acetolactate synthase 99.7 2.8E-17 6E-22 162.2 12.6 121 142-268 429-568 (569)
66 COG0028 IlvB Thiamine pyrophos 99.7 1.9E-17 4.2E-22 162.1 11.3 117 141-269 406-533 (550)
67 TIGR01504 glyox_carbo_lig glyo 99.7 1.4E-17 3E-22 164.9 10.2 122 142-271 417-559 (588)
68 TIGR03297 Ppyr-DeCO2ase phosph 99.7 1.8E-16 3.8E-21 147.8 16.1 165 72-271 173-340 (361)
69 PRK12474 hypothetical protein; 99.7 4E-17 8.6E-22 159.4 11.9 113 142-266 388-518 (518)
70 PRK06154 hypothetical protein; 99.7 3.9E-17 8.4E-22 161.0 12.0 121 142-271 430-559 (565)
71 COG2609 AceE Pyruvate dehydrog 99.7 2.4E-15 5.2E-20 145.6 22.8 232 35-273 74-397 (887)
72 PRK08266 hypothetical protein; 99.7 9.4E-17 2E-21 157.5 12.9 119 142-272 401-530 (542)
73 PRK09124 pyruvate dehydrogenas 99.7 1E-16 2.2E-21 158.3 13.2 119 141-271 406-534 (574)
74 PRK06725 acetolactate synthase 99.7 1E-16 2.3E-21 158.1 13.3 117 142-270 421-548 (570)
75 PRK09107 acetolactate synthase 99.7 8.7E-17 1.9E-21 159.4 12.6 117 142-270 429-557 (595)
76 PRK11269 glyoxylate carboligas 99.7 4.6E-17 9.9E-22 161.3 10.6 121 142-270 418-559 (591)
77 PRK05858 hypothetical protein; 99.7 7.1E-17 1.5E-21 158.4 11.8 117 142-270 406-533 (542)
78 PRK06546 pyruvate dehydrogenas 99.7 1.1E-16 2.5E-21 158.1 13.3 117 142-270 407-533 (578)
79 TIGR02418 acolac_catab acetola 99.7 7E-17 1.5E-21 158.4 11.6 118 142-271 407-534 (539)
80 cd03375 TPP_OGFOR Thiamine pyr 99.7 1.9E-16 4E-21 135.9 12.8 121 142-272 50-189 (193)
81 PRK07092 benzoylformate decarb 99.7 8.2E-17 1.8E-21 157.6 11.6 114 142-267 406-530 (530)
82 PRK07064 hypothetical protein; 99.7 1.5E-16 3.2E-21 156.2 13.0 116 142-269 404-530 (544)
83 cd03376 TPP_PFOR_porB_like Thi 99.7 9.8E-17 2.1E-21 141.6 10.6 118 140-267 59-200 (235)
84 PRK07979 acetolactate synthase 99.7 1.8E-16 4E-21 156.5 13.1 121 142-271 420-552 (574)
85 PRK07586 hypothetical protein; 99.7 1E-16 2.2E-21 156.3 11.2 113 142-266 384-514 (514)
86 PLN02225 1-deoxy-D-xylulose-5- 99.7 7.1E-16 1.5E-20 152.9 17.1 223 29-270 87-367 (701)
87 PLN02573 pyruvate decarboxylas 99.7 1.2E-16 2.5E-21 158.0 11.0 118 142-269 427-554 (578)
88 PRK08979 acetolactate synthase 99.7 2.7E-16 5.9E-21 155.3 13.4 119 142-271 420-550 (572)
89 PRK08527 acetolactate synthase 99.7 3.6E-16 7.8E-21 154.1 13.9 119 142-272 413-543 (563)
90 PRK08273 thiamine pyrophosphat 99.7 2.7E-16 5.9E-21 156.0 12.6 118 142-270 414-549 (597)
91 PRK06882 acetolactate synthase 99.7 3.5E-16 7.6E-21 154.5 13.2 120 142-272 420-551 (574)
92 PRK06965 acetolactate synthase 99.7 3E-16 6.5E-21 155.4 12.5 118 142-270 436-565 (587)
93 TIGR02720 pyruv_oxi_spxB pyruv 99.7 2.9E-16 6.3E-21 155.1 12.4 120 142-271 407-536 (575)
94 PRK08199 thiamine pyrophosphat 99.7 3.2E-16 7E-21 154.3 12.4 119 141-271 413-542 (557)
95 PRK08611 pyruvate oxidase; Pro 99.7 3.9E-16 8.4E-21 154.3 12.8 118 142-271 407-534 (576)
96 PRK06466 acetolactate synthase 99.7 3.6E-16 7.9E-21 154.4 12.6 118 142-270 422-551 (574)
97 TIGR03457 sulphoacet_xsc sulfo 99.7 3.7E-16 8.1E-21 154.5 12.7 121 142-271 429-561 (579)
98 PRK08617 acetolactate synthase 99.7 3.4E-16 7.4E-21 153.9 12.3 118 142-271 413-540 (552)
99 PRK07710 acetolactate synthase 99.7 3.5E-16 7.6E-21 154.4 12.4 117 142-270 423-551 (571)
100 PRK08322 acetolactate synthase 99.7 4E-16 8.7E-21 153.2 12.7 118 142-271 405-532 (547)
101 PRK06112 acetolactate synthase 99.7 3.7E-16 8.1E-21 154.4 12.5 119 142-272 436-565 (578)
102 PRK08155 acetolactate synthase 99.7 5.9E-16 1.3E-20 152.6 13.3 117 142-270 418-546 (564)
103 TIGR03254 oxalate_oxc oxalyl-C 99.7 5.5E-16 1.2E-20 152.5 13.0 116 142-270 416-541 (554)
104 PRK06457 pyruvate dehydrogenas 99.7 5.4E-16 1.2E-20 152.4 12.8 119 142-271 395-523 (549)
105 TIGR03393 indolpyr_decarb indo 99.7 2.2E-16 4.9E-21 154.8 10.0 116 142-269 403-529 (539)
106 PRK07418 acetolactate synthase 99.7 2.5E-16 5.5E-21 156.7 10.4 118 141-270 432-562 (616)
107 TIGR00118 acolac_lg acetolacta 99.7 4.7E-16 1E-20 153.1 11.6 117 142-270 411-539 (558)
108 CHL00099 ilvB acetohydroxyacid 99.7 6.3E-16 1.4E-20 153.0 12.6 118 141-270 428-558 (585)
109 PRK06048 acetolactate synthase 99.7 8E-16 1.7E-20 151.6 12.9 117 142-270 413-541 (561)
110 PRK08978 acetolactate synthase 99.7 8.8E-16 1.9E-20 150.9 13.0 118 142-271 400-529 (548)
111 PRK06456 acetolactate synthase 99.7 9.4E-16 2E-20 151.4 13.3 117 142-270 420-548 (572)
112 PLN02470 acetolactate synthase 99.6 1.2E-15 2.7E-20 151.0 13.5 117 142-270 425-560 (585)
113 PRK07525 sulfoacetaldehyde ace 99.6 1.4E-15 2.9E-20 150.8 12.7 122 141-271 433-566 (588)
114 PRK09628 oorB 2-oxoglutarate-a 99.6 1.1E-15 2.3E-20 137.7 10.7 117 143-269 68-203 (277)
115 TIGR03394 indol_phenyl_DC indo 99.6 7E-16 1.5E-20 151.2 10.1 117 142-270 402-524 (535)
116 PRK09259 putative oxalyl-CoA d 99.6 2.1E-15 4.5E-20 148.9 13.4 116 142-270 423-549 (569)
117 PRK07282 acetolactate synthase 99.6 1.7E-15 3.6E-20 149.5 11.4 116 142-270 417-544 (566)
118 PRK06276 acetolactate synthase 99.6 2.9E-15 6.2E-20 148.4 12.7 116 142-269 418-545 (586)
119 cd02018 TPP_PFOR Thiamine pyro 99.6 1.3E-15 2.7E-20 134.7 9.1 122 141-267 62-203 (237)
120 PRK07789 acetolactate synthase 99.6 2.5E-15 5.5E-20 149.5 11.7 118 142-270 446-579 (612)
121 PRK11867 2-oxoglutarate ferred 99.6 1.5E-14 3.3E-19 130.9 14.9 114 143-266 69-201 (286)
122 PRK05778 2-oxoglutarate ferred 99.6 4.7E-15 1E-19 134.9 10.5 114 143-266 70-202 (301)
123 PRK11869 2-oxoacid ferredoxin 99.6 5.7E-15 1.2E-19 132.9 10.5 116 143-267 60-193 (280)
124 PRK07449 2-succinyl-5-enolpyru 99.6 3.4E-15 7.3E-20 147.3 8.3 115 142-269 424-551 (568)
125 PRK11866 2-oxoacid ferredoxin 99.6 1.8E-14 4E-19 129.7 11.3 115 142-266 58-191 (279)
126 COG3961 Pyruvate decarboxylase 99.5 6.8E-14 1.5E-18 132.4 11.7 166 71-271 363-539 (557)
127 TIGR02177 PorB_KorB 2-oxoacid: 99.5 4E-14 8.6E-19 127.9 9.8 114 143-267 53-186 (287)
128 TIGR03336 IOR_alpha indolepyru 99.5 9.8E-14 2.1E-18 137.7 13.2 119 139-266 399-529 (595)
129 PLN02980 2-oxoglutarate decarb 99.4 5.9E-13 1.3E-17 144.8 9.1 119 140-271 756-893 (1655)
130 PF09364 XFP_N: XFP N-terminal 99.4 2.9E-12 6.3E-17 117.1 9.8 193 64-273 47-287 (379)
131 KOG1185 Thiamine pyrophosphate 99.4 7.1E-12 1.5E-16 117.8 12.3 120 140-270 427-563 (571)
132 COG3962 Acetolactate synthase 99.3 1.2E-10 2.6E-15 109.1 15.1 164 71-269 395-577 (617)
133 KOG1184 Thiamine pyrophosphate 99.2 3.1E-11 6.8E-16 114.2 9.3 123 139-269 411-541 (561)
134 KOG4166 Thiamine pyrophosphate 99.2 3.6E-11 7.8E-16 111.6 8.6 116 142-269 523-649 (675)
135 PRK11865 pyruvate ferredoxin o 99.2 5.4E-10 1.2E-14 101.5 13.3 124 137-266 63-210 (299)
136 COG3960 Glyoxylate carboligase 99.0 6E-10 1.3E-14 101.0 7.2 125 140-272 416-561 (592)
137 COG3957 Phosphoketolase [Carbo 98.7 1.1E-07 2.3E-12 93.4 9.7 199 31-244 13-255 (793)
138 COG1013 PorB Pyruvate:ferredox 98.6 3.8E-07 8.2E-12 83.0 11.5 115 142-266 69-203 (294)
139 COG1165 MenD 2-succinyl-6-hydr 98.5 4.5E-06 9.7E-11 80.6 14.9 220 13-272 306-551 (566)
140 COG4231 Indolepyruvate ferredo 98.4 1.1E-06 2.3E-11 85.9 9.6 114 141-265 426-552 (640)
141 PRK09193 indolepyruvate ferred 97.7 0.00022 4.7E-09 75.4 10.8 117 142-264 480-614 (1165)
142 cd03377 TPP_PFOR_PNO Thiamine 97.7 0.00033 7.2E-09 65.3 10.7 95 166-266 152-266 (365)
143 PRK13030 2-oxoacid ferredoxin 97.6 0.00036 7.8E-09 73.9 11.1 114 142-264 467-600 (1159)
144 PRK13029 2-oxoacid ferredoxin 97.3 0.0015 3.1E-08 69.3 10.7 117 142-264 494-628 (1186)
145 cd06586 TPP_enzyme_PYR Pyrimid 97.0 0.014 3.1E-07 47.2 11.3 104 149-264 48-152 (154)
146 cd07035 TPP_PYR_POX_like Pyrim 96.8 0.02 4.4E-07 46.7 10.9 105 149-264 47-153 (155)
147 cd07039 TPP_PYR_POX Pyrimidine 96.7 0.028 6.2E-07 46.8 11.2 105 151-265 53-157 (164)
148 TIGR02176 pyruv_ox_red pyruvat 96.6 0.011 2.5E-07 63.3 10.1 96 166-267 952-1067(1165)
149 TIGR03845 sulfopyru_alph sulfo 96.6 0.035 7.6E-07 46.0 10.8 107 146-265 44-153 (157)
150 cd07038 TPP_PYR_PDC_IPDC_like 96.6 0.026 5.6E-07 46.9 10.0 106 150-264 49-160 (162)
151 cd07034 TPP_PYR_PFOR_IOR-alpha 96.5 0.028 6E-07 46.1 9.5 105 149-264 54-158 (160)
152 PF02776 TPP_enzyme_N: Thiamin 96.4 0.036 7.8E-07 46.3 10.0 106 149-265 52-160 (172)
153 cd07033 TPP_PYR_DXS_TK_like Py 95.0 0.19 4.1E-06 41.4 8.9 101 148-264 51-154 (156)
154 cd07037 TPP_PYR_MenD Pyrimidin 94.8 0.22 4.7E-06 41.5 8.8 104 151-264 50-160 (162)
155 COG0028 IlvB Thiamine pyrophos 94.5 0.35 7.6E-06 48.1 10.7 105 151-265 54-159 (550)
156 PRK07119 2-ketoisovalerate fer 94.5 0.36 7.8E-06 45.2 10.3 108 148-267 60-172 (352)
157 PRK08611 pyruvate oxidase; Pro 94.2 0.52 1.1E-05 47.0 11.3 106 151-266 58-163 (576)
158 TIGR03297 Ppyr-DeCO2ase phosph 94.2 0.18 4E-06 47.4 7.6 114 143-264 33-150 (361)
159 TIGR03254 oxalate_oxc oxalyl-C 94.1 0.5 1.1E-05 46.8 11.0 108 151-266 55-163 (554)
160 PRK07524 hypothetical protein; 94.1 0.62 1.3E-05 45.9 11.5 108 150-265 53-162 (535)
161 PRK07525 sulfoacetaldehyde ace 94.0 0.56 1.2E-05 46.9 11.2 105 151-265 58-162 (588)
162 PRK08659 2-oxoglutarate ferred 94.0 0.41 8.8E-06 45.3 9.6 110 147-266 59-171 (376)
163 PRK09259 putative oxalyl-CoA d 93.6 0.73 1.6E-05 45.8 11.1 107 151-265 62-169 (569)
164 PF01855 POR_N: Pyruvate flavo 93.6 0.13 2.9E-06 45.2 5.2 108 149-269 49-157 (230)
165 PRK08266 hypothetical protein; 93.5 0.77 1.7E-05 45.3 11.1 109 151-267 58-168 (542)
166 TIGR03457 sulphoacet_xsc sulfo 93.5 0.65 1.4E-05 46.3 10.6 106 151-266 54-159 (579)
167 PRK07418 acetolactate synthase 93.3 0.84 1.8E-05 45.9 11.1 105 151-265 75-180 (616)
168 PRK07064 hypothetical protein; 93.2 1.1 2.3E-05 44.3 11.5 108 151-266 56-165 (544)
169 PRK06276 acetolactate synthase 93.2 0.88 1.9E-05 45.4 11.0 107 150-266 52-159 (586)
170 PRK07979 acetolactate synthase 93.2 0.8 1.7E-05 45.6 10.6 106 151-266 57-163 (574)
171 PRK06725 acetolactate synthase 93.2 0.78 1.7E-05 45.7 10.5 106 151-266 67-173 (570)
172 TIGR01504 glyox_carbo_lig glyo 93.1 1.1 2.5E-05 44.7 11.7 95 166-267 69-164 (588)
173 PRK06457 pyruvate dehydrogenas 93.1 1.1 2.4E-05 44.4 11.4 106 151-266 54-159 (549)
174 PRK06112 acetolactate synthase 93.1 0.99 2.1E-05 45.0 11.1 107 151-267 64-171 (578)
175 PRK06456 acetolactate synthase 93.0 0.97 2.1E-05 44.9 10.9 106 151-266 58-164 (572)
176 cd07036 TPP_PYR_E1-PDHc-beta_l 92.8 0.61 1.3E-05 39.0 7.8 100 148-263 56-164 (167)
177 PRK08978 acetolactate synthase 92.7 0.91 2E-05 44.9 10.2 106 151-266 53-159 (548)
178 PRK07789 acetolactate synthase 92.7 1.1 2.3E-05 45.1 10.8 107 151-267 84-191 (612)
179 TIGR03710 OAFO_sf 2-oxoacid:ac 92.7 0.58 1.3E-05 46.6 8.8 112 148-270 249-364 (562)
180 PRK06466 acetolactate synthase 92.7 1 2.2E-05 44.8 10.6 107 151-267 57-164 (574)
181 PRK08322 acetolactate synthase 92.7 1.2 2.6E-05 44.0 11.0 106 151-266 53-159 (547)
182 PRK11269 glyoxylate carboligas 92.7 1.1 2.4E-05 44.7 10.9 107 151-266 57-164 (591)
183 TIGR00118 acolac_lg acetolacta 92.6 1.1 2.4E-05 44.3 10.7 106 151-266 54-160 (558)
184 PLN02470 acetolactate synthase 92.6 0.99 2.1E-05 45.1 10.4 106 151-266 66-172 (585)
185 PRK08366 vorA 2-ketoisovalerat 92.6 1.2 2.6E-05 42.4 10.4 111 148-271 61-171 (390)
186 PRK08273 thiamine pyrophosphat 92.5 1.1 2.3E-05 45.0 10.4 107 151-267 57-164 (597)
187 TIGR00204 dxs 1-deoxy-D-xylulo 92.4 0.72 1.6E-05 46.5 9.1 103 148-264 364-467 (617)
188 PRK07586 hypothetical protein; 92.3 1.1 2.4E-05 43.9 10.2 107 151-267 54-161 (514)
189 PRK07710 acetolactate synthase 92.3 1.2 2.6E-05 44.3 10.6 107 150-266 67-174 (571)
190 PRK08199 thiamine pyrophosphat 92.2 1.4 3.1E-05 43.6 10.9 105 151-265 61-166 (557)
191 PRK09107 acetolactate synthase 92.1 1.2 2.5E-05 44.7 10.2 106 151-266 64-170 (595)
192 TIGR02720 pyruv_oxi_spxB pyruv 92.0 1.8 3.8E-05 43.2 11.3 107 151-267 53-159 (575)
193 PRK08155 acetolactate synthase 91.9 1.6 3.4E-05 43.4 10.8 105 151-265 66-171 (564)
194 TIGR02418 acolac_catab acetola 91.5 1.8 3.9E-05 42.7 10.7 107 151-267 51-158 (539)
195 cd01460 vWA_midasin VWA_Midasi 91.5 1.9 4.1E-05 38.8 9.9 84 167-251 166-257 (266)
196 PRK08617 acetolactate synthase 91.4 1.7 3.7E-05 43.0 10.4 94 165-265 68-162 (552)
197 PRK06965 acetolactate synthase 91.4 2.1 4.6E-05 42.7 11.2 106 151-266 74-180 (587)
198 PRK12474 hypothetical protein; 91.4 1.9 4.1E-05 42.3 10.7 107 151-267 58-165 (518)
199 PF02779 Transket_pyr: Transke 91.4 1.8 4E-05 36.2 9.2 105 148-264 60-170 (178)
200 PRK08979 acetolactate synthase 91.3 1.8 3.8E-05 43.1 10.5 107 150-266 56-163 (572)
201 PRK06882 acetolactate synthase 91.3 2 4.3E-05 42.8 10.7 107 151-267 57-164 (574)
202 PRK07282 acetolactate synthase 91.2 1.8 4E-05 43.0 10.4 106 151-266 63-169 (566)
203 PRK06048 acetolactate synthase 91.2 1.9 4.1E-05 42.8 10.5 106 150-265 59-165 (561)
204 TIGR03394 indol_phenyl_DC indo 91.1 1.4 3.1E-05 43.5 9.5 109 151-267 53-165 (535)
205 PRK08527 acetolactate synthase 90.6 2.3 5E-05 42.2 10.5 105 151-265 56-161 (563)
206 PRK08327 acetolactate synthase 90.5 1.6 3.4E-05 43.5 9.2 107 151-265 65-179 (569)
207 PRK05858 hypothetical protein; 90.4 2.7 5.9E-05 41.5 10.8 106 151-266 57-163 (542)
208 CHL00099 ilvB acetohydroxyacid 90.3 2.6 5.7E-05 42.1 10.6 106 151-266 66-172 (585)
209 PRK09627 oorA 2-oxoglutarate-a 89.9 1.7 3.8E-05 41.1 8.6 106 149-266 60-170 (375)
210 PRK05444 1-deoxy-D-xylulose-5- 89.6 2.2 4.7E-05 42.7 9.4 102 149-264 334-436 (580)
211 PRK09622 porA pyruvate flavodo 89.4 3.2 7E-05 39.7 10.1 108 148-268 68-177 (407)
212 PRK12571 1-deoxy-D-xylulose-5- 89.4 1.9 4.1E-05 43.8 8.8 102 148-264 373-476 (641)
213 PRK11892 pyruvate dehydrogenas 89.4 2.7 5.9E-05 40.9 9.6 101 147-263 200-309 (464)
214 PRK08367 porA pyruvate ferredo 89.2 3 6.5E-05 39.8 9.6 110 148-270 62-173 (394)
215 PRK09124 pyruvate dehydrogenas 89.2 3.9 8.4E-05 40.7 10.9 103 151-265 56-160 (574)
216 PLN02573 pyruvate decarboxylas 88.7 3.2 6.9E-05 41.5 9.9 107 151-266 69-181 (578)
217 PLN02683 pyruvate dehydrogenas 88.6 3.5 7.7E-05 38.7 9.6 102 146-263 84-194 (356)
218 PLN02582 1-deoxy-D-xylulose-5- 88.6 2.6 5.6E-05 43.0 9.1 103 148-264 410-513 (677)
219 KOG4166 Thiamine pyrophosphate 88.6 2.8 6.1E-05 40.2 8.7 149 104-264 90-248 (675)
220 PRK06546 pyruvate dehydrogenas 88.5 4.1 9E-05 40.6 10.5 106 151-266 56-161 (578)
221 PLN02225 1-deoxy-D-xylulose-5- 88.4 2.1 4.6E-05 43.7 8.4 104 147-264 434-538 (701)
222 PLN02234 1-deoxy-D-xylulose-5- 88.3 2.3 5E-05 43.1 8.5 101 148-262 411-512 (641)
223 PRK06154 hypothetical protein; 88.2 4.2 9.2E-05 40.5 10.3 92 166-266 83-175 (565)
224 PRK12315 1-deoxy-D-xylulose-5- 87.7 2.4 5.2E-05 42.5 8.3 103 148-264 332-434 (581)
225 COG4032 Predicted thiamine-pyr 87.6 3.4 7.3E-05 33.7 7.4 107 147-263 53-160 (172)
226 TIGR00232 tktlase_bact transke 87.2 4.5 9.7E-05 41.1 9.9 81 176-264 430-512 (653)
227 TIGR00173 menD 2-succinyl-5-en 87.0 2.5 5.5E-05 40.5 7.7 108 151-266 53-165 (432)
228 PRK07092 benzoylformate decarb 86.6 5.9 0.00013 39.0 10.3 106 151-265 63-169 (530)
229 PRK05899 transketolase; Review 86.4 3.7 8E-05 41.4 8.8 102 149-264 380-483 (624)
230 TIGR03336 IOR_alpha indolepyru 86.3 4.4 9.5E-05 40.7 9.3 103 149-266 59-163 (595)
231 PTZ00089 transketolase; Provis 85.9 5.7 0.00012 40.4 9.9 102 149-264 416-519 (661)
232 COG0021 TktA Transketolase [Ca 82.4 5.7 0.00012 39.9 7.8 76 182-264 441-518 (663)
233 PLN02790 transketolase 81.8 9.9 0.00021 38.7 9.6 77 181-264 431-509 (654)
234 COG0674 PorA Pyruvate:ferredox 81.4 12 0.00027 35.2 9.6 111 147-270 58-169 (365)
235 PTZ00182 3-methyl-2-oxobutanat 81.2 9.6 0.00021 35.8 8.7 99 147-262 93-201 (355)
236 COG1154 Dxs Deoxyxylulose-5-ph 80.8 6.6 0.00014 39.2 7.6 91 165-264 382-473 (627)
237 PRK12753 transketolase; Review 80.5 11 0.00025 38.4 9.5 102 149-264 415-518 (663)
238 PRK12754 transketolase; Review 80.4 8.5 0.00019 39.2 8.6 102 149-264 415-518 (663)
239 PRK09212 pyruvate dehydrogenas 80.0 15 0.00032 34.0 9.5 103 147-265 62-173 (327)
240 CHL00144 odpB pyruvate dehydro 77.9 18 0.00039 33.5 9.4 61 193-263 110-171 (327)
241 TIGR03393 indolpyr_decarb indo 77.7 17 0.00037 35.9 9.7 107 150-267 53-166 (539)
242 PLN02980 2-oxoglutarate decarb 77.5 7.7 0.00017 43.7 7.9 105 151-265 354-465 (1655)
243 PRK13683 hypothetical protein; 76.7 3.8 8.2E-05 30.3 3.5 41 227-271 13-53 (87)
244 COG3958 Transketolase, C-termi 75.8 12 0.00025 34.3 7.1 100 149-264 62-165 (312)
245 COG1107 Archaea-specific RecJ- 75.6 4.6 0.0001 40.2 4.8 54 181-243 403-458 (715)
246 smart00861 Transket_pyr Transk 71.5 36 0.00078 27.8 8.8 101 149-264 62-164 (168)
247 PF04273 DUF442: Putative phos 69.3 15 0.00032 28.5 5.6 47 218-267 47-96 (110)
248 COG2205 KdpD Osmosensitive K+ 68.4 16 0.00035 37.9 7.0 93 165-264 249-341 (890)
249 PF13519 VWA_2: von Willebrand 64.3 22 0.00048 28.1 6.0 73 165-248 99-171 (172)
250 COG1240 ChlD Mg-chelatase subu 62.8 48 0.001 29.7 8.1 77 165-248 177-258 (261)
251 COG1303 Uncharacterized protei 58.7 30 0.00065 28.8 5.6 46 218-266 21-66 (179)
252 PRK10490 sensor protein KdpD; 58.2 42 0.00092 35.5 8.2 93 166-266 252-345 (895)
253 PRK07449 2-succinyl-5-enolpyru 54.7 47 0.001 32.9 7.6 46 151-202 62-107 (568)
254 cd01453 vWA_transcription_fact 53.7 1.2E+02 0.0026 25.2 8.9 71 165-249 107-178 (183)
255 cd01451 vWA_Magnesium_chelatas 53.1 1.3E+02 0.0027 24.7 10.0 71 166-245 99-175 (178)
256 PRK13685 hypothetical protein; 49.9 2E+02 0.0044 26.3 10.4 82 166-249 194-286 (326)
257 PF08806 Sep15_SelM: Sep15/Sel 47.8 11 0.00023 27.5 1.3 33 12-44 42-74 (78)
258 PF06833 MdcE: Malonate decarb 46.9 1.6E+02 0.0035 26.1 8.7 74 165-261 28-109 (234)
259 smart00115 CASc Caspase, inter 46.0 82 0.0018 27.7 6.9 69 195-264 9-79 (241)
260 PRK13406 bchD magnesium chelat 44.4 1.5E+02 0.0033 29.9 9.2 95 144-249 471-582 (584)
261 PF06506 PrpR_N: Propionate ca 44.3 86 0.0019 26.0 6.5 85 165-254 76-168 (176)
262 cd00640 Trp-synth-beta_II Tryp 43.2 1.3E+02 0.0028 26.0 7.7 39 187-237 67-105 (244)
263 PF01380 SIS: SIS domain SIS d 43.1 69 0.0015 24.3 5.4 40 163-204 52-91 (131)
264 COG3360 Uncharacterized conser 42.9 51 0.0011 23.3 3.9 42 230-272 7-48 (71)
265 PF14399 Transpep_BrtH: NlpC/p 42.7 2.1E+02 0.0046 25.6 9.3 49 220-272 55-103 (317)
266 TIGR02176 pyruv_ox_red pyruvat 42.4 1.8E+02 0.0038 32.0 9.9 109 149-269 64-172 (1165)
267 COG2515 Acd 1-aminocyclopropan 41.6 1.4E+02 0.0031 27.6 7.7 87 166-263 64-152 (323)
268 TIGR00239 2oxo_dh_E1 2-oxoglut 41.6 2.2E+02 0.0047 30.5 10.1 109 146-264 657-772 (929)
269 PRK00278 trpC indole-3-glycero 40.7 2.6E+02 0.0057 24.8 9.4 94 156-267 74-170 (260)
270 KOG1145 Mitochondrial translat 39.2 1.8E+02 0.0039 29.3 8.5 102 164-273 225-344 (683)
271 PLN02331 phosphoribosylglycina 39.2 2.4E+02 0.0051 24.3 8.5 53 167-236 2-57 (207)
272 cd00032 CASc Caspase, interleu 37.3 1.1E+02 0.0023 26.8 6.3 69 195-264 10-80 (243)
273 cd05014 SIS_Kpsf KpsF-like pro 36.1 1.5E+02 0.0033 22.5 6.4 40 163-204 46-85 (128)
274 TIGR00515 accD acetyl-CoA carb 35.9 87 0.0019 28.5 5.5 14 193-206 193-206 (285)
275 PRK05647 purN phosphoribosylgl 35.6 1.4E+02 0.003 25.5 6.6 56 166-237 3-60 (200)
276 PRK06027 purU formyltetrahydro 35.5 2.9E+02 0.0064 25.0 9.0 54 164-236 89-145 (286)
277 COG0532 InfB Translation initi 35.5 1.6E+02 0.0035 29.1 7.6 125 138-273 59-198 (509)
278 cd01987 USP_OKCHK USP domain i 34.0 2E+02 0.0043 21.5 6.9 63 177-239 11-73 (124)
279 COG0299 PurN Folate-dependent 33.2 3.2E+02 0.0069 23.6 8.3 78 166-264 2-85 (200)
280 PRK09404 sucA 2-oxoglutarate d 33.0 3.6E+02 0.0079 28.9 10.2 106 147-264 656-770 (924)
281 PLN03013 cysteine synthase 32.4 2.2E+02 0.0047 27.6 7.9 54 168-237 177-230 (429)
282 PRK09932 glycerate kinase II; 31.6 2.3E+02 0.005 27.0 7.8 34 168-201 286-324 (381)
283 PRK13010 purU formyltetrahydro 31.5 3E+02 0.0064 25.1 8.3 54 164-236 93-149 (289)
284 COG0075 Serine-pyruvate aminot 30.7 1.2E+02 0.0026 28.9 5.7 16 220-235 95-110 (383)
285 PLN02522 ATP citrate (pro-S)-l 30.5 2.6E+02 0.0056 28.4 8.3 85 163-254 220-318 (608)
286 PF05014 Nuc_deoxyrib_tr: Nucl 30.3 1E+02 0.0022 23.3 4.5 39 166-205 63-101 (113)
287 PRK08558 adenine phosphoribosy 30.2 3.8E+02 0.0082 23.5 8.7 107 149-263 95-208 (238)
288 COG0108 RibB 3,4-dihydroxy-2-b 30.2 1.9E+02 0.0041 25.0 6.3 67 162-235 121-192 (203)
289 PF04748 Polysacc_deac_2: Dive 30.1 1.9E+02 0.0041 25.0 6.5 48 220-268 133-185 (213)
290 cd05710 SIS_1 A subgroup of th 30.0 1.4E+02 0.0031 22.8 5.3 40 163-204 46-85 (120)
291 TIGR01117 mmdA methylmalonyl-C 29.6 83 0.0018 31.1 4.6 14 193-206 154-167 (512)
292 TIGR01139 cysK cysteine syntha 29.6 2.9E+02 0.0063 24.8 8.0 39 187-237 74-112 (298)
293 TIGR03590 PseG pseudaminic aci 28.9 3.7E+02 0.0081 23.9 8.5 34 170-203 3-41 (279)
294 cd05009 SIS_GlmS_GlmD_2 SIS (S 28.7 1.6E+02 0.0035 23.0 5.5 39 164-203 61-99 (153)
295 PRK06381 threonine synthase; V 28.4 4.5E+02 0.0097 23.8 9.1 39 187-237 80-118 (319)
296 COG0769 MurE UDP-N-acetylmuram 28.4 4.9E+02 0.011 25.5 9.7 150 98-273 299-450 (475)
297 cd01452 VWA_26S_proteasome_sub 28.4 99 0.0022 26.3 4.4 36 166-201 108-144 (187)
298 PRK07328 histidinol-phosphatas 27.4 3.5E+02 0.0076 23.9 8.0 76 182-261 179-255 (269)
299 KOG1184 Thiamine pyrophosphate 27.3 2.1E+02 0.0045 28.4 6.7 95 166-267 68-170 (561)
300 PLN02618 tryptophan synthase, 26.7 3.1E+02 0.0066 26.4 7.8 70 152-235 107-176 (410)
301 TIGR00655 PurU formyltetrahydr 26.7 4.1E+02 0.0088 24.0 8.3 53 165-236 85-140 (280)
302 PRK06988 putative formyltransf 26.5 2.6E+02 0.0056 25.6 7.1 59 168-235 4-62 (312)
303 TIGR02442 Cob-chelat-sub cobal 26.4 2.8E+02 0.0061 28.1 7.9 80 146-234 538-632 (633)
304 PRK01322 6-carboxyhexanoate--C 25.9 2.4E+02 0.0051 25.2 6.3 76 181-265 157-241 (242)
305 PRK10342 glycerate kinase I; P 25.8 3.8E+02 0.0083 25.5 8.1 35 168-202 286-325 (381)
306 PRK13028 tryptophan synthase s 25.6 3.1E+02 0.0067 26.2 7.6 71 152-236 98-168 (402)
307 PF13899 Thioredoxin_7: Thiore 25.3 63 0.0014 22.9 2.3 17 249-265 9-25 (82)
308 COG3960 Glyoxylate carboligase 25.1 2.5E+02 0.0055 26.5 6.6 48 217-266 116-164 (592)
309 PF00926 DHBP_synthase: 3,4-di 25.0 1.9E+02 0.0041 24.8 5.5 67 164-235 119-188 (194)
310 COG1424 BioW Pimeloyl-CoA synt 24.9 2.3E+02 0.005 24.5 5.8 76 182-266 154-238 (239)
311 cd01561 CBS_like CBS_like: Thi 24.8 3.7E+02 0.008 23.9 7.7 41 186-238 69-109 (291)
312 cd05017 SIS_PGI_PMI_1 The memb 24.7 1.8E+02 0.0039 22.1 5.0 56 163-235 42-97 (119)
313 TIGR00315 cdhB CO dehydrogenas 24.6 1.3E+02 0.0028 25.0 4.3 38 165-202 27-64 (162)
314 PRK05654 acetyl-CoA carboxylas 24.6 1.3E+02 0.0029 27.5 4.7 67 142-208 130-209 (292)
315 cd05008 SIS_GlmS_GlmD_1 SIS (S 24.3 2.1E+02 0.0045 21.6 5.3 39 164-204 46-84 (126)
316 COG0044 PyrC Dihydroorotase an 24.3 3.2E+02 0.007 26.3 7.6 93 168-265 144-255 (430)
317 TIGR00506 ribB 3,4-dihydroxy-2 24.1 2.8E+02 0.0061 23.8 6.4 66 163-235 123-193 (199)
318 PRK04346 tryptophan synthase s 23.6 3.8E+02 0.0082 25.6 7.8 71 152-236 94-164 (397)
319 cd01450 vWFA_subfamily_ECM Von 23.3 2.6E+02 0.0057 21.5 5.9 38 164-201 102-140 (161)
320 PRK00124 hypothetical protein; 23.3 1.7E+02 0.0036 24.1 4.6 35 169-206 3-37 (151)
321 TIGR01415 trpB_rel pyridoxal-p 23.0 6.8E+02 0.015 24.0 9.8 41 188-237 136-176 (419)
322 TIGR00441 gmhA phosphoheptose 22.8 1.8E+02 0.0039 23.4 4.8 40 163-204 78-117 (154)
323 CHL00174 accD acetyl-CoA carbo 22.8 1.5E+02 0.0033 27.2 4.7 19 186-204 161-179 (296)
324 COG0022 AcoB Pyruvate/2-oxoglu 22.7 6.3E+02 0.014 23.5 10.0 98 149-262 62-168 (324)
325 COG2257 Uncharacterized homolo 22.1 47 0.001 24.9 1.0 69 158-253 12-82 (92)
326 PRK00414 gmhA phosphoheptose i 22.0 2.2E+02 0.0047 24.0 5.3 40 163-204 110-149 (192)
327 TIGR00045 glycerate kinase. Th 21.7 4.1E+02 0.0088 25.3 7.5 34 168-201 285-323 (375)
328 TIGR01204 bioW 6-carboxyhexano 21.6 2.7E+02 0.0058 24.6 5.8 74 181-263 150-232 (232)
329 PRK13936 phosphoheptose isomer 21.6 2.1E+02 0.0046 24.2 5.2 40 163-204 110-149 (197)
330 cd00198 vWFA Von Willebrand fa 21.6 3.4E+02 0.0073 20.4 6.1 38 164-201 100-139 (161)
331 PRK10886 DnaA initiator-associ 21.3 2E+02 0.0043 24.5 5.0 40 163-204 108-147 (196)
332 PRK13938 phosphoheptose isomer 21.0 2.6E+02 0.0057 23.8 5.6 42 161-204 110-151 (196)
333 PRK08329 threonine synthase; V 20.8 4.1E+02 0.0089 24.6 7.4 40 186-237 120-159 (347)
334 PRK13802 bifunctional indole-3 20.8 5.3E+02 0.012 26.7 8.6 72 151-236 366-437 (695)
335 PF00656 Peptidase_C14: Caspas 20.7 1.9E+02 0.0042 24.5 4.9 58 197-254 3-63 (248)
336 TIGR00460 fmt methionyl-tRNA f 20.6 4.5E+02 0.0097 24.0 7.5 85 169-267 3-87 (313)
337 PF05209 MinC_N: Septum format 20.5 2E+02 0.0043 21.4 4.3 44 223-266 9-54 (99)
338 PF10609 ParA: ParA/MinD ATPas 20.5 1.7E+02 0.0038 21.3 3.8 39 169-207 29-67 (81)
339 TIGR00147 lipid kinase, YegS/R 20.2 2.7E+02 0.0058 24.8 5.8 31 165-200 58-89 (293)
340 cd05007 SIS_Etherase N-acetylm 20.0 2.2E+02 0.0048 25.2 5.2 40 163-204 117-156 (257)
No 1
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=4.1e-69 Score=492.17 Aligned_cols=262 Identities=37% Similarity=0.618 Sum_probs=249.8
Q ss_pred CeeEeeCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCccc-ccccCChhHHHHHHHHhccCCC-c
Q 023827 13 PCYRVLDDDGQPFPDSSFV--KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTSGEEAINIASAAAIKND-D 88 (276)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~~--~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~~-~~~~~~G~Ea~~~~~~~al~~~-D 88 (276)
+.+++++.+|+...+.... .+++++++++|++|+++|.||+++.+++++|+++ |+|+++||||++++++.+|+++ |
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D 81 (358)
T COG1071 2 SLIRVLDEDGRAVDELPGPNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGED 81 (358)
T ss_pred CceeccCcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCC
Confidence 5789999999998776443 7999999999999999999999999999999997 9999999999999999999966 9
Q ss_pred EEEccCCcHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccccccccccchhhhHHHHhhhcCCCc-e
Q 023827 89 FVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDA-C 167 (276)
Q Consensus 89 ~~~~~yR~~~~~~~~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~A~G~A~a~k~~~~~~-~ 167 (276)
|++++||+|++++++|+|+.++|++++|+.+|+|+|+++++|+.+++.++++.++++|.|+|+|+|+|+|.|+++.+. +
T Consensus 82 ~i~~~YR~h~~~l~~G~~~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~V 161 (358)
T COG1071 82 WIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGV 161 (358)
T ss_pred EeecccCccccceecCCCHHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcE
Confidence 999999999999999999999999999999999999999999998889999999999999999999999999999555 9
Q ss_pred EEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHH
Q 023827 168 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVH 247 (276)
Q Consensus 168 vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~ 247 (276)
++|++|||+.++|+|||+||+|+.|+||+||+|+||+|+||+|...+...+.++.++.+||+|+++|||+|+.+++++++
T Consensus 162 a~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~ 241 (358)
T COG1071 162 AVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAK 241 (358)
T ss_pred EEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888777777778889999999999999999999999999
Q ss_pred HHHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 248 AAREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 248 ~a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
+|++++|++++|+|||+.|||+.||+.
T Consensus 242 ~A~e~AR~g~GPtLIE~~tYR~~~HS~ 268 (358)
T COG1071 242 EAVERARAGEGPTLIEAVTYRYGGHST 268 (358)
T ss_pred HHHHHHHcCCCCEEEEEEEeecCCCCC
Confidence 999999999999999999999999985
No 2
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=7.7e-61 Score=442.38 Aligned_cols=245 Identities=26% Similarity=0.409 Sum_probs=235.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcc-cccccCChhHHHHHHHHhccCCCcEEEccCCcHHHHHHcCCCHH
Q 023827 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQ 108 (276)
Q Consensus 30 ~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~-~~~~~~~G~Ea~~~~~~~al~~~D~~~~~yR~~~~~~~~G~~~~ 108 (276)
.+.+++++++++|++|+++|.||+++.+++++|++ +|+|++.||||++++++.+|+++|+++++||+|++++++|+++.
T Consensus 14 ~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~ 93 (341)
T CHL00149 14 ENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPPK 93 (341)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCCCHH
Confidence 35699999999999999999999999999999999 68999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCccccCCCCCCccccccccccccchhhhHHHHhhhcC-------CCceEEEEECCCcCCcch
Q 023827 109 EFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-------KDACAVTYFGDGGTSEGD 181 (276)
Q Consensus 109 ~~l~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~A~G~A~a~k~~~-------~~~~vv~~~GDG~~~~G~ 181 (276)
++|++++|+.+|+++|+++++|+.+++.++++.+++||.++|.|+|+|+|.|+++ ++++|+|++|||++++|.
T Consensus 94 ~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~ 173 (341)
T CHL00149 94 NVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQ 173 (341)
T ss_pred HHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcH
Confidence 9999999999999999999999998888888889999999999999999999876 589999999999999999
Q ss_pred HHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEE
Q 023827 182 FHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPIL 261 (276)
Q Consensus 182 ~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~l 261 (276)
+||+|++|++|+||+||||+||+|+++++...+...+++++++++||+++++|||+|+.++++++++|++++|++++|+|
T Consensus 174 ~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~l 253 (341)
T CHL00149 174 FFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPTL 253 (341)
T ss_pred HHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEE
Confidence 99999999999999999999999999998777777789999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCC
Q 023827 262 IEVKCLSFSIFLS 274 (276)
Q Consensus 262 Ie~~t~R~~g~~~ 274 (276)
||++|||++||++
T Consensus 254 Iev~tyR~~gHs~ 266 (341)
T CHL00149 254 IEALTYRFRGHSL 266 (341)
T ss_pred EEEEEecCCCcCC
Confidence 9999999999986
No 3
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=8.5e-61 Score=443.87 Aligned_cols=241 Identities=27% Similarity=0.460 Sum_probs=231.4
Q ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcc-cccccCChhHHHHHHHHhccCCCcEEEccCCcHHHHHHcCCCHHH
Q 023827 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQE 109 (276)
Q Consensus 31 ~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~-~~~~~~~G~Ea~~~~~~~al~~~D~~~~~yR~~~~~~~~G~~~~~ 109 (276)
+.+++++++++||+|+++|.||+++..++++|++ +|+|++.||||++++++.+|+++||++++||+|++++++|+++.+
T Consensus 25 ~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~~~~~ 104 (362)
T PLN02269 25 VETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLE 104 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCCCHHH
Confidence 4789999999999999999999999999999999 599999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCccccCCCCCCccccccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHH
Q 023827 110 FANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFS 189 (276)
Q Consensus 110 ~l~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A 189 (276)
+|++++|+.+|+++|+++++|+.+++.++++.++++|+++|+|+|+|+|.|+++.+.+++|++|||++++|.|||+||+|
T Consensus 105 ~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A 184 (362)
T PLN02269 105 VFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIA 184 (362)
T ss_pred HHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHh
Confidence 99999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 023827 190 AVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSF 269 (276)
Q Consensus 190 ~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 269 (276)
+.|+||+||||+||+|+++++...+....++++++ +++++++|||+|+.+++++++.|++++|+ ++|+|||++|||+
T Consensus 185 ~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~--~~~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR~ 261 (362)
T PLN02269 185 ALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRG--DYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRY 261 (362)
T ss_pred hccCcCEEEEEeCCCEeccCchhhhccchHHHHhh--cCCCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCcC
Confidence 99999999999999999999987777777777544 68999999999999999999999999999 8999999999999
Q ss_pred CCCCC
Q 023827 270 SIFLS 274 (276)
Q Consensus 270 ~g~~~ 274 (276)
+|||+
T Consensus 262 ~gHs~ 266 (362)
T PLN02269 262 HGHSM 266 (362)
T ss_pred CCcCC
Confidence 99986
No 4
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=2.2e-60 Score=435.80 Aligned_cols=240 Identities=29% Similarity=0.485 Sum_probs=232.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhcCcc-cccccCChhHHHHHHHHhccCCCcEEEccCCcHHHHHHcCCCHHHHHHH
Q 023827 35 EGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQ 113 (276)
Q Consensus 35 ~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~-~~~~~~~G~Ea~~~~~~~al~~~D~~~~~yR~~~~~~~~G~~~~~~l~~ 113 (276)
+|+++++||+|+++|.||+++.+++++|++ +|+|++.||||++++++.+|+++||++++||+|++++++|+++.++|.+
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~ 80 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE 80 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHH
Confidence 478999999999999999999999999999 5888999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCCccccCCCCCCccccccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCC
Q 023827 114 CFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE 193 (276)
Q Consensus 114 ~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~ 193 (276)
++|+++|+++|+++++|+.+++.++++.+++||+++|.|+|+|+|.|+++++++|+|++|||++++|.+||+|++|+.++
T Consensus 81 ~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~ 160 (315)
T TIGR03182 81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWK 160 (315)
T ss_pred HcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccC
Confidence 99999999999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCC
Q 023827 194 APVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFL 273 (276)
Q Consensus 194 Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~ 273 (276)
+|+||||+||+|+++++...+...+++++++++||+++++|||+|+.++++++++|++++|++++|+|||++|||++|||
T Consensus 161 lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 240 (315)
T TIGR03182 161 LPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHS 240 (315)
T ss_pred cCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCC
Confidence 99999999999999998877777789999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 023827 274 S 274 (276)
Q Consensus 274 ~ 274 (276)
+
T Consensus 241 ~ 241 (315)
T TIGR03182 241 M 241 (315)
T ss_pred C
Confidence 6
No 5
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=2.2e-61 Score=425.32 Aligned_cols=274 Identities=64% Similarity=1.045 Sum_probs=266.6
Q ss_pred CccccCCCCCCCCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccccccCChhHHHHHHH
Q 023827 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIAS 80 (276)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~ 80 (276)
|+||++++.+.+|+|||+|.||++.++.+.+.++.+..++||++|++...+|+.+++.+|||||+||+++.|+|++-++.
T Consensus 51 l~fI~~~d~~~iPiYRV~d~~G~ii~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRiSFYmT~~GEEa~higS 130 (432)
T KOG1182|consen 51 LEFIQPSDTPRIPIYRVMDADGQIIDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRISFYMTNFGEEAIHIGS 130 (432)
T ss_pred eeecCcccCCCCceEEEecCCCcccCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEEeccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCcEEEccCCcHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccccccccccchhhhHHHHhh
Q 023827 81 AAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 160 (276)
Q Consensus 81 ~~al~~~D~~~~~yR~~~~~~~~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~A~G~A~a~k 160 (276)
++||.+.|+|++.||..++++++|+++++.+.+.+|+..+..+|++||+|+.+++.+++..++++..++|.|+|+|+|.|
T Consensus 131 AAAL~p~Dli~gQYREaGVLlwRgftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k 210 (432)
T KOG1182|consen 131 AAALEPQDLIYGQYREAGVLLWRGFTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALK 210 (432)
T ss_pred hhhCCcccccccccccCceEEEcCccHHHHHHHhcCCccccccccccccccCccccceEEecchhhhccchhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCC-ceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCH
Q 023827 161 MDRKD-ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 239 (276)
Q Consensus 161 ~~~~~-~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~ 239 (276)
++.++ +.+||++|||+.++|++|.++|+|+..+.|+||+|-||+|+|+||++++.....++.++.+||+.+++|||+|+
T Consensus 211 ~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~ 290 (432)
T KOG1182|consen 211 MRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDA 290 (432)
T ss_pred hcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCceEEeccccceEEEEecCcch
Confidence 77655 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 240 LAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 240 ~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
.++|.|+++|.+.+-...+|+|||+.|||.+.||-
T Consensus 291 lAvYnA~k~ARe~av~e~rPvliEamtYRvGHHST 325 (432)
T KOG1182|consen 291 LAVYNAVKEAREMAVTEQRPVLIEAMTYRVGHHST 325 (432)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhhhhhhhccccC
Confidence 99999999999999888999999999999999973
No 6
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=4.2e-59 Score=440.45 Aligned_cols=246 Identities=28% Similarity=0.440 Sum_probs=236.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcc-cccccCChhHHHHHHHHhccCCCcEEEccCCcHHHHHHcCCCH
Q 023827 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSM 107 (276)
Q Consensus 29 ~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~-~~~~~~~G~Ea~~~~~~~al~~~D~~~~~yR~~~~~~~~G~~~ 107 (276)
..+.+++++++++|++|+++|.||+++.+++++|++ +++|++.||||++++++.+|+++||++++||+|++++++|+++
T Consensus 79 ~~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~ 158 (433)
T PLN02374 79 SDLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPA 158 (433)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCH
Confidence 346899999999999999999999999999999999 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCccccCCCCCCccccccccccccchhhhHHHHhhhcC-------CCceEEEEECCCcCCcc
Q 023827 108 QEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-------KDACAVTYFGDGGTSEG 180 (276)
Q Consensus 108 ~~~l~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~A~G~A~a~k~~~-------~~~~vv~~~GDG~~~~G 180 (276)
+++|.|++|+++|+++|+++++|+.+++.++.+.+++||.++|.|+|+|+|.|+++ ++++|+|++|||++++|
T Consensus 159 ~~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG 238 (433)
T PLN02374 159 RAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNG 238 (433)
T ss_pred HHHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccC
Confidence 99999999999999999999999998888999999999999999999999999875 48899999999999999
Q ss_pred hHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCE
Q 023827 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPI 260 (276)
Q Consensus 181 ~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~ 260 (276)
.|||+||+|+.|+||+||||+||+|+++++...+...+++++++++||+++++|||+|+.++++++++|++++|++++|+
T Consensus 239 ~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~ 318 (433)
T PLN02374 239 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPT 318 (433)
T ss_pred hHHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999999999999998877776778899999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCCC
Q 023827 261 LIEVKCLSFSIFLS 274 (276)
Q Consensus 261 lIe~~t~R~~g~~~ 274 (276)
|||++|||++||++
T Consensus 319 LIe~~tyR~~GHs~ 332 (433)
T PLN02374 319 LVECETYRFRGHSL 332 (433)
T ss_pred EEEEEEEecCCcCC
Confidence 99999999999986
No 7
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=4.5e-58 Score=424.53 Aligned_cols=253 Identities=40% Similarity=0.607 Sum_probs=235.8
Q ss_pred CeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhccCCCcEEEc
Q 023827 13 PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVP 92 (276)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~~~D~~~~ 92 (276)
|+|||++.+|...++...+.+++++++++||+|+++|.||+++.+++++|+++|+|+++||||++++++.+|+++|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~vg~~~al~~~D~~~~ 80 (341)
T TIGR03181 1 ELVQVLDEDGNVVDPEPAPDLSDEELVELYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGSALALRKDDWVFP 80 (341)
T ss_pred CceEEECCCCCcCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecccCCCChHHHHHHHHHHcCCCCEEEc
Confidence 67999999998755433457999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccccccccccchhhhHHHHhhhcCCCceEEEEE
Q 023827 93 QYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYF 172 (276)
Q Consensus 93 ~yR~~~~~~~~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~ 172 (276)
+||+|++++++|+++.++|++++|+.+|. + ..+..++++.+++||.++|.|+|+|+|.|+.+++++|+|++
T Consensus 81 ~yR~h~~~l~~G~~~~~~~ae~~g~~~g~--------~-~~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~ 151 (341)
T TIGR03181 81 SYRDHAAMLARGVPLVEILLYWRGDERGS--------W-DPEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYF 151 (341)
T ss_pred chhhHHHHHHcCCCHHHHHHHhcCcCcCC--------C-CchhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEe
Confidence 99999999999999999999999986542 1 13567889999999999999999999999999999999999
Q ss_pred CCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHH
Q 023827 173 GDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREM 252 (276)
Q Consensus 173 GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~ 252 (276)
|||++++|.++|+|++|++|+||+||||+||+|+++++...+...+++++++++||+++++|||+|+.++++++++|+++
T Consensus 152 GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ 231 (341)
T TIGR03181 152 GDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVER 231 (341)
T ss_pred cCCccccChHHHHHHHHhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887766666789999999999999999999999999999999999
Q ss_pred hHccCCCEEEEEEEecCCCCCC
Q 023827 253 AIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 253 ~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
+|++++|+|||++|||+.||++
T Consensus 232 a~~~~gP~lIev~t~R~~gH~~ 253 (341)
T TIGR03181 232 ARSGGGPTLIEAVTYRLGPHTT 253 (341)
T ss_pred HHcCCCCEEEEEEeecCCCCCC
Confidence 9999999999999999999986
No 8
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=7.9e-58 Score=415.50 Aligned_cols=234 Identities=42% Similarity=0.688 Sum_probs=226.7
Q ss_pred HHHHHHHHhhHHHHHHHHHhcCcccc-cccCChhHHHHHHHHhccCCCcEEEccCCcHHHHHHcCCCHHHHHHHhhcCCC
Q 023827 41 MYNDMVTLQTMDTIFYEAQRQGRISF-YLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKA 119 (276)
Q Consensus 41 ly~~m~~~R~~d~~~~~~~~~g~~~~-~~~~~G~Ea~~~~~~~al~~~D~~~~~yR~~~~~~~~G~~~~~~l~~~~~~~~ 119 (276)
+||+|+++|.||+++.+++++|++++ +|++.||||++++++.+|+++|+++++||+|++++++|+++.++|.+++|+.+
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~ 80 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 59999999999999999999999974 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccCCCCCCccccccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEE
Q 023827 120 DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI 199 (276)
Q Consensus 120 ~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~v 199 (276)
|+++|+++++|+.++..++++.+|+||+++|+|+|+|+|.|+.+++++|+|++|||++++|.++|+|++|++++||+|||
T Consensus 81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~v 160 (293)
T cd02000 81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFV 160 (293)
T ss_pred CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEE
Confidence 99999999999999899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 200 CRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 200 v~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
|+||+|+++++...+.+.+++++++++||+++++|||+|++++++++++|++++|++++|+|||+.|+|..|||+
T Consensus 161 v~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~ 235 (293)
T cd02000 161 CENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHST 235 (293)
T ss_pred EeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCCCC
Confidence 999999999887776677899999999999999999999999999999999999999999999999999999994
No 9
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=6.2e-57 Score=400.05 Aligned_cols=256 Identities=28% Similarity=0.493 Sum_probs=237.8
Q ss_pred CCCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcc-cccccCChhHHHHHHHHhccCCCcE
Q 023827 11 RIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDF 89 (276)
Q Consensus 11 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~-~~~~~~~G~Ea~~~~~~~al~~~D~ 89 (276)
....+++...|..+ .....+++++++++|++|+++|.||..+..++++++| +|+|++.||||+++++-.+|++.|.
T Consensus 37 ~~~~~~~~~l~~~p---~~s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~~D~ 113 (394)
T KOG0225|consen 37 ESSPFELHKLEEGP---STSVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITKSDS 113 (394)
T ss_pred cccceeEEEccCCC---CceEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhccCCCc
Confidence 33445555444222 1234689999999999999999999999999999999 5999999999999999999999999
Q ss_pred EEccCCcHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccccccccccchhhhHHHHhhhcCCCceEE
Q 023827 90 VVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAV 169 (276)
Q Consensus 90 ~~~~yR~~~~~~~~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv 169 (276)
++++||+|++.+.+|.++.++|+|++|+.+|+++|++++||+.. .+|++.+|++|.|+|.+.|+|+|.|+++.+.+++
T Consensus 114 iItsYR~Hg~~~~~G~S~~~v~aEL~Gr~~Gc~kGKGGSMHmy~--k~FyGGnGIVGAQiPLGaGia~A~kY~~~~~v~~ 191 (394)
T KOG0225|consen 114 IITSYRCHGWTYLRGVSVREVLAELMGRQAGCSKGKGGSMHMYA--KNFYGGNGIVGAQIPLGAGIAFAQKYNREDAVCF 191 (394)
T ss_pred eEEEeeeeeEEeecCccHHHHHHHHhccccccccCCCcceeeec--ccccCccceeccCCCccccHHHHHHhccCCceEE
Confidence 99999999999999999999999999999999999999999865 4599999999999999999999999999999999
Q ss_pred EEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHH
Q 023827 170 TYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAA 249 (276)
Q Consensus 170 ~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a 249 (276)
++.|||+.+||+++|++|+|+.|+||+||||+||.|++.++.......+++.++. .| +|++.|||.|+.+|..|.+.|
T Consensus 192 alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA 269 (394)
T KOG0225|consen 192 ALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHYGMGTSAERASASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFA 269 (394)
T ss_pred EEeccccccchhHHHHhhHHHHhCCCEEEEEccCCCccCcchhhhhcChHHHhcc-CC-CCceEECCcchhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888889999998 45 999999999999999999999
Q ss_pred HHHhHccCCCEEEEEEEecCCCCC
Q 023827 250 REMAIGEGRPILIEVKCLSFSIFL 273 (276)
Q Consensus 250 ~~~~r~~~~P~lIe~~t~R~~g~~ 273 (276)
.+++++++||.++|+.|||++|||
T Consensus 270 ~~~~~~g~GPilmE~~TYRy~GHS 293 (394)
T KOG0225|consen 270 KKYALEGKGPILMEMDTYRYHGHS 293 (394)
T ss_pred HHHHhcCCCCEEEEEeeeeecccc
Confidence 999999999999999999999998
No 10
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=5.6e-56 Score=404.04 Aligned_cols=233 Identities=40% Similarity=0.638 Sum_probs=211.9
Q ss_pred HHHHHHHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhccCCCcEEEccCCcHHHHHHcCCCHHHHHHHhhcCCCCC
Q 023827 42 YNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADY 121 (276)
Q Consensus 42 y~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~~~D~~~~~yR~~~~~~~~G~~~~~~l~~~~~~~~~~ 121 (276)
|+.|+..|..|+++.+..++|+.+|++++.||||++++++.+|+++||++++||+|++++++|+++.++|.+++|+..+.
T Consensus 1 y~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~ 80 (300)
T PF00676_consen 1 YRMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGH 80 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTST
T ss_pred CchHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCC
Confidence 67777777777777777788888899999999999999999999999999999999999999999999999999999776
Q ss_pred CCCCCCccccCCCCCCccccccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEE
Q 023827 122 GKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 201 (276)
Q Consensus 122 ~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~ 201 (276)
+.|+. +.|...+..++++.++++|.++|+|+|+|+|.|+++.+.+++|++|||++++|.|||+||+|+.|+||+||||+
T Consensus 81 ~g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvve 159 (300)
T PF00676_consen 81 GGGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVE 159 (300)
T ss_dssp TTTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CCCcc-ccccccccceeeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEe
Confidence 66665 67877777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCC
Q 023827 202 NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLSV 275 (276)
Q Consensus 202 nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~~ 275 (276)
||+|+++++...++...+++++|++||+++++|||+|+.++++++++|++++|++++|+|||++|||+.|||+.
T Consensus 160 NN~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~ 233 (300)
T PF00676_consen 160 NNQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSES 233 (300)
T ss_dssp EESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTT
T ss_pred cCCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCC
Confidence 99999999999999899999999999999999999999999999999999999999999999999999999973
No 11
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=100.00 E-value=2.4e-46 Score=332.07 Aligned_cols=222 Identities=18% Similarity=0.200 Sum_probs=200.8
Q ss_pred HHHHHHHHHhcCcccccccCChhHHHHHHHHhccCC------CcEEEcc-CCcHHHHHH--cCCCHHHHHHHhhcCCC--
Q 023827 51 MDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKN------DDFVVPQ-YREPGVLLW--RGFSMQEFANQCFGNKA-- 119 (276)
Q Consensus 51 ~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~~------~D~~~~~-yR~~~~~~~--~G~~~~~~l~~~~~~~~-- 119 (276)
||+++.+++..-+ +| +..|+|++++++...+++ .|+++++ |||+...|. +|+|++++|.|+.|+.+
T Consensus 1 ~e~f~~~~f~~~k-rf--s~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~ 77 (265)
T cd02016 1 FEQFLATKFPGQK-RF--GLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFP 77 (265)
T ss_pred ChhhHHHhcCCCe-EE--EecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCC
Confidence 5777777775432 23 589999999999999887 7999998 999999999 99999999999999877
Q ss_pred -CCCCCCCCccccCCCC-----------CCccccccccccccchhhhHHHHhhhcC-----CCceEEEEECCCcC-Ccch
Q 023827 120 -DYGKGRQMPIHYGSNK-----------HNYFTVSSTIATQLPHAVGAAYALKMDR-----KDACAVTYFGDGGT-SEGD 181 (276)
Q Consensus 120 -~~~~G~~~~~h~~~~~-----------~~~~~~~g~lG~~l~~A~G~A~a~k~~~-----~~~~vv~~~GDG~~-~~G~ 181 (276)
+.+.++..+.|+.... ..+.++++++|.++|+|+|+|+|.|+++ .+.+++|++|||++ +||.
T Consensus 78 ~~~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~ 157 (265)
T cd02016 78 EDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGV 157 (265)
T ss_pred CCCCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCCh
Confidence 4456788899987653 4577889999999999999999999987 47899999999997 7999
Q ss_pred HHHHHHHHHHCCCC---EEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCC
Q 023827 182 FHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGR 258 (276)
Q Consensus 182 ~~Eal~~A~~~~Lp---vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~ 258 (276)
|||+||+|..|++| +||||+||+|+++++...+.+..++++++++||+|+++|||+|++++++++++|++++|++++
T Consensus 158 ~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~g 237 (265)
T cd02016 158 VYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKK 237 (265)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999998 999999999999999988888889999999999999999999999999999999999999999
Q ss_pred CEEEEEEEecCCCCCCC
Q 023827 259 PILIEVKCLSFSIFLSV 275 (276)
Q Consensus 259 P~lIe~~t~R~~g~~~~ 275 (276)
|+|||++|||++|||+.
T Consensus 238 p~lIe~~tYR~~GHse~ 254 (265)
T cd02016 238 DVVIDLVCYRRHGHNEL 254 (265)
T ss_pred CEEEEEEEecCCCCCCc
Confidence 99999999999999973
No 12
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=5.2e-45 Score=368.53 Aligned_cols=240 Identities=16% Similarity=0.148 Sum_probs=210.6
Q ss_pred CCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHh------ccCCCcEEEc-cCCcHHHHHH--
Q 023827 32 KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAA------AIKNDDFVVP-QYREPGVLLW-- 102 (276)
Q Consensus 32 ~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~------al~~~D~~~~-~yR~~~~~~~-- 102 (276)
.+++++++++|+.|+++|.||+++.+++..+|. | +..|||++.+++.. ++++.|++++ +||||++.|+
T Consensus 185 ~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Kr-f--~~eG~Ea~i~gl~~li~~a~~lg~~D~vigmaHRgrlnvLa~v 261 (924)
T PRK09404 185 SFSAEEKKAILERLTAAEGFERFLHTKFVGQKR-F--SLEGGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNV 261 (924)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-c--cccchhhHHHHHHHHHHHHHhCCCCCEEEecCcCchHHHHHHh
Confidence 789999999999999999999999999988874 3 67999999998888 6668999999 5999999998
Q ss_pred cCCCHHHHHHHhhcCC--CCCCCCCCCccccCCCC-----C-----CccccccccccccchhhhHHHHhhhcCCC-----
Q 023827 103 RGFSMQEFANQCFGNK--ADYGKGRQMPIHYGSNK-----H-----NYFTVSSTIATQLPHAVGAAYALKMDRKD----- 165 (276)
Q Consensus 103 ~G~~~~~~l~~~~~~~--~~~~~G~~~~~h~~~~~-----~-----~~~~~~g~lG~~l~~A~G~A~a~k~~~~~----- 165 (276)
+|++++++|++++|+. ++.+.++....|+.... - ....+.+++|...|+|+|+|+|.++++.+
T Consensus 262 ~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~npShleav~Pva~G~A~A~q~~~~~~~~~~ 341 (924)
T PRK09404 262 LGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDGQDRK 341 (924)
T ss_pred cCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccCCccccccccCeehhHHHHHHHhcCCccccc
Confidence 5999999999999987 32222223333333221 0 01224589999999999999999998777
Q ss_pred -ceEEEEECCCcC-CcchHHHHHHHHHHCCCC---EEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHH
Q 023827 166 -ACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240 (276)
Q Consensus 166 -~~vv~~~GDG~~-~~G~~~Eal~~A~~~~Lp---vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~ 240 (276)
.+++|++|||++ ++|.|||+||+|+.|++| +||||+||+|+++|+...+.+..+++++|++||+|+++|||+|++
T Consensus 342 ~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s~~~~sd~Ak~~giP~~~VDG~D~~ 421 (924)
T PRK09404 342 KVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHVNGDDPE 421 (924)
T ss_pred ceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhccchhHHHHHeecCCcEEEEcCCCHH
Confidence 799999999998 799999999999999997 999999999999999888777788999999999999999999999
Q ss_pred HHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 241 AIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 241 ~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
+++++++.|++++|+++||+|||++|||++|||+
T Consensus 422 AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne 455 (924)
T PRK09404 422 AVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNE 455 (924)
T ss_pred HHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCC
Confidence 9999999999999999999999999999999997
No 13
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=1.7e-39 Score=327.39 Aligned_cols=242 Identities=16% Similarity=0.113 Sum_probs=212.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhc------cCCCcEEEcc-CCcHHHHHH
Q 023827 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAA------IKNDDFVVPQ-YREPGVLLW 102 (276)
Q Consensus 30 ~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~a------l~~~D~~~~~-yR~~~~~~~ 102 (276)
...+++++.+++++.++.+-.||+++.++|..-| +| +..|.|+...++-.. ....|+++++ |||+...|+
T Consensus 183 ~~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~K-RF--slEG~eslip~l~~~i~~~~~~gv~d~v~gmaHRGRlnvL~ 259 (929)
T TIGR00239 183 RAQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAK-RF--SLEGLDALVPMLKEIIRHSVNSGTRDVVLGMAHRGRLNVLV 259 (929)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ee--ecccHHHHHHHHHHHHHHHHHcCCCeEEeccccCCcHHHHH
Confidence 3578999999999999999999999998885433 44 468888877654433 3468999998 999999998
Q ss_pred --cCCCHHHHHHHhhcCCCC-CCCCCCCc-cccCC-----------CCCCccccccccccccchhhhHHHHhhhcCC---
Q 023827 103 --RGFSMQEFANQCFGNKAD-YGKGRQMP-IHYGS-----------NKHNYFTVSSTIATQLPHAVGAAYALKMDRK--- 164 (276)
Q Consensus 103 --~G~~~~~~l~~~~~~~~~-~~~G~~~~-~h~~~-----------~~~~~~~~~g~lG~~l~~A~G~A~a~k~~~~--- 164 (276)
+|+|++++|.+|.|+..+ .+.|++.. .|+.. ....+.+++++++...|+|+|.|+|.++++.
T Consensus 260 nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~Pva~G~ArA~q~~~~~~~ 339 (929)
T TIGR00239 260 NVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSPVVIGSTRARLDRLNDSP 339 (929)
T ss_pred HHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccchhhhHHHHHHHhcCCcc
Confidence 999999999999998765 33466655 78773 2245778899999999999999999998765
Q ss_pred ---CceEEEEECCCcC-CcchHHHHHHHHHHCCCCE---EEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCC
Q 023827 165 ---DACAVTYFGDGGT-SEGDFHAALNFSAVTEAPV---IFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (276)
Q Consensus 165 ---~~~vv~~~GDG~~-~~G~~~Eal~~A~~~~Lpv---i~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~ 237 (276)
+.+++|++|||++ ++|.|||+||+|+.|++|+ ||||+||+|+++|+.....+...++++|++||+|+++|||+
T Consensus 340 ~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~~sd~Ak~ygiP~~~VDG~ 419 (929)
T TIGR00239 340 ESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAKMIQAPIFHVNAD 419 (929)
T ss_pred cccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccCHHHHheecCCCEEEECCC
Confidence 5789999999997 8999999999999999997 99999999999998777777778999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 238 DALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 238 d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
|+++++++++.|++++|+++||+|||++|||++|||+
T Consensus 420 D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne 456 (929)
T TIGR00239 420 DPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNE 456 (929)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCC
Confidence 9999999999999999999999999999999999997
No 14
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-34 Score=245.50 Aligned_cols=218 Identities=19% Similarity=0.217 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhcCcccccccCCh-hHHHHHHHHhccC--C-------CcEEEccCCcH------HHHH
Q 023827 38 AIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSG-EEAINIASAAAIK--N-------DDFVVPQYREP------GVLL 101 (276)
Q Consensus 38 l~~ly~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G-~Ea~~~~~~~al~--~-------~D~~~~~yR~~------~~~~ 101 (276)
..++-+....+|.-.-++.....+|+.+ .+.. -|-.++.....|+ | .|+++.+ .|| +.+.
T Consensus 7 ~~~L~~~A~~iRr~~v~m~~~~~~GH~G---~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLS-KGHaa~AlYa~La 82 (243)
T COG3959 7 VDELERIAREIRRNIVRMLANAGSGHVG---GSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILS-KGHAAPALYATLA 82 (243)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCcC---ccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEe-cccchHHHHHHHH
Confidence 4445555666676655555555555443 2222 2444444445443 2 3666665 555 3455
Q ss_pred HcCCCHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcc
Q 023827 102 WRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180 (276)
Q Consensus 102 ~~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~-~~~~~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G 180 (276)
.+|+.+++.+..|.. .|+.+++|+... .+++..++|+||+|+++|+|+|++.|+++.+.+|++++|||+++||
T Consensus 83 e~G~~p~eeL~~~~~------~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG 156 (243)
T COG3959 83 EKGYFPEEELETFRR------IGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEG 156 (243)
T ss_pred HcCCCCHHHHHHhcc------CCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccc
Confidence 789999999998764 378899999874 5689999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHCCC-CEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCC
Q 023827 181 DFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRP 259 (276)
Q Consensus 181 ~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P 259 (276)
++|||+.+|++|+| |+|.||+.|+.|+++.+.+..+..++.+++++|||++++|||||++++.+|+.++..- .++|
T Consensus 157 ~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~---~~rP 233 (243)
T COG3959 157 QVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGS---KGRP 233 (243)
T ss_pred cHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhcc---CCCC
Confidence 99999999999999 9999999999999999999999999999999999999999999999999998887642 3499
Q ss_pred EEEEEEEec
Q 023827 260 ILIEVKCLS 268 (276)
Q Consensus 260 ~lIe~~t~R 268 (276)
++|.++|.+
T Consensus 234 ~~IIa~Tvk 242 (243)
T COG3959 234 TVIIAKTVK 242 (243)
T ss_pred eEEEEeccc
Confidence 999999975
No 15
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=5.9e-34 Score=280.07 Aligned_cols=224 Identities=17% Similarity=0.180 Sum_probs=184.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcc-cccccCChhHHHHHHHHhccC---CCcEEE--ccCCcHHHHHH
Q 023827 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIK---NDDFVV--PQYREPGVLLW 102 (276)
Q Consensus 29 ~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~-~~~~~~~G~Ea~~~~~~~al~---~~D~~~--~~yR~~~~~~~ 102 (276)
|.+.++.++|.++-..+ |.+ ..+.+++. ++++++.|+ +.+.++.++. |.|+++ +.||+|++.+.
T Consensus 11 d~~~l~~~~l~~l~~~i---r~~-----~~~~~~~~~Gh~~~~lg~--vel~~al~~~f~~~~D~ii~d~ghr~~~~~l~ 80 (581)
T PRK12315 11 DLKKLSLDELEQLASEI---RTA-----LLEKDSAHGGHVGPNLGV--VELTIALHYVFNSPKDKIVWDVSHQSYPHKML 80 (581)
T ss_pred HHhhCCHHHHHHHHHHH---HHH-----HHHHHHhcCCCcCcchhH--HHHHHHHHhhcCCCCCcEEEecCCchHHHHHH
Confidence 45677777766654433 433 22333455 488899998 4455555666 899999 89999999999
Q ss_pred cCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchH
Q 023827 103 RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF 182 (276)
Q Consensus 103 ~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~ 182 (276)
+|+++...+.+++|+.+|++++++ +.|.. ..+|+.|.++|+|+|+|+|.|+++.+.+|||++|||++++|.+
T Consensus 81 ~G~~~~~~~~~~~g~~~G~~~~~~-s~~~~-------~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~ 152 (581)
T PRK12315 81 TGRKEAFLDPDHYDDVTGYTNPEE-SEHDF-------FTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLA 152 (581)
T ss_pred cCCccchhhHHHcCCCCCCCCCCC-CCCCC-------cCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchH
Confidence 999999999999999999887766 33321 3568899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCEEEEEEeCCccccccccC---------ccCCcchhhhHhhcCceEEEE-cCCCHHHHHHHHHHHHHH
Q 023827 183 HAALNFSAVTEAPVIFICRNNGWAISTPISD---------QFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREM 252 (276)
Q Consensus 183 ~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~---------~~~~~~~~~~a~a~G~~~~~v-dg~d~~~v~~a~~~a~~~ 252 (276)
|||||+|+.|++|+|+||+||+|++++++.. .....++.+++++|||+++.| ||||+.++++++++|.+
T Consensus 153 ~EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~- 231 (581)
T PRK12315 153 LEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVKD- 231 (581)
T ss_pred HHHHHHHHhhCCCEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHh-
Confidence 9999999999999999999999999977642 223345678999999999998 99999999999988753
Q ss_pred hHccCCCEEEEEEEecCCCCCC
Q 023827 253 AIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 253 ~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
.++|++|+++|+|..|.++
T Consensus 232 ---~~gP~~i~~~T~kG~G~~~ 250 (581)
T PRK12315 232 ---IDHPIVLHIHTLKGKGYQP 250 (581)
T ss_pred ---CCCCEEEEEEeecCCCCCh
Confidence 6799999999999999753
No 16
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.97 E-value=1.3e-29 Score=226.25 Aligned_cols=167 Identities=26% Similarity=0.294 Sum_probs=147.5
Q ss_pred HHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccccccccccccchhhhHHHHhhhcCCCceEEEEECCCcC
Q 023827 99 VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT 177 (276)
Q Consensus 99 ~~~~~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~-~~~~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~ 177 (276)
.+...|+..++.|..++.. |+.++.|+.... +++...+|+||+++|.|+|+|+|.++.+++++|||++|||++
T Consensus 66 ~l~~~g~~~~~~l~~~~~~------gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~ 139 (255)
T cd02012 66 VLALAGYLPEEDLKTFRQL------GSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGEL 139 (255)
T ss_pred HHHHcCCCCHHHHHHhccc------CCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccc
Confidence 4556788777777777653 667888987654 477888999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHCCC-CEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHcc
Q 023827 178 SEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGE 256 (276)
Q Consensus 178 ~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~ 256 (276)
++|.+||++++|++++| ++++|++||+|+++.+........++++++++|||++++|||+|++++.+++++|.+. .
T Consensus 140 ~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~---~ 216 (255)
T cd02012 140 QEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKS---K 216 (255)
T ss_pred cccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHc---C
Confidence 99999999999999999 5999999999999887766667789999999999999999999999999999988752 2
Q ss_pred CCCEEEEEEEecCCCCCC
Q 023827 257 GRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 257 ~~P~lIe~~t~R~~g~~~ 274 (276)
++|++|+++|.|..|++.
T Consensus 217 ~~P~~I~~~t~kg~g~~~ 234 (255)
T cd02012 217 GKPTLIIAKTIKGKGVPF 234 (255)
T ss_pred CCCEEEEEEeecccccCc
Confidence 689999999999999974
No 17
>PRK12754 transketolase; Reviewed
Probab=99.97 E-value=2.4e-29 Score=249.32 Aligned_cols=213 Identities=22% Similarity=0.248 Sum_probs=165.4
Q ss_pred HhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhccC--C-------CcEEEccCCcHH------HHHHcCC-CHHHHH
Q 023827 48 LQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--N-------DDFVVPQYREPG------VLLWRGF-SMQEFA 111 (276)
Q Consensus 48 ~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~--~-------~D~~~~~yR~~~------~~~~~G~-~~~~~l 111 (276)
+|..--.+......|+.+--+++ -|...+.....|+ | .|.++.+ .||+ .+...|+ ...+.|
T Consensus 11 iR~~~~~~~~~a~sGH~G~~ls~--a~i~~~Ly~~~l~~~p~~p~w~~RDRfvlS-~GH~~~~lYa~l~~~G~~~~~e~L 87 (663)
T PRK12754 11 IRALSMDAVQKAKSGHPGAPMGM--ADIAEVLWRDFLNHNPQNPSWADRDRFVLS-NGHGSMLIYSLLHLTGYDLPMEEL 87 (663)
T ss_pred HHHHHHHHHHhcCCCCcccchHH--HHHHHHHHHHhcCCCccCCCCCCCCeEEEe-CccHHHHHHHHHHHcCCCCCHHHH
Confidence 44443344444455665432221 1333333334454 2 2665544 4443 3456787 555667
Q ss_pred HHhhcCCCCCCCCCCCccccCCC-CCCccccccccccccchhhhHHHHhhhcC----------CCceEEEEECCCcCCcc
Q 023827 112 NQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGGTSEG 180 (276)
Q Consensus 112 ~~~~~~~~~~~~G~~~~~h~~~~-~~~~~~~~g~lG~~l~~A~G~A~a~k~~~----------~~~~vv~~~GDG~~~~G 180 (276)
.+|+.. |+..++|+... .+++..++|++|+|++.|+|+|+|.|+.+ .+.+++|++|||+++||
T Consensus 88 ~~fr~~------gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG 161 (663)
T PRK12754 88 KNFRQL------HSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEG 161 (663)
T ss_pred HHhccC------CCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhch
Confidence 778753 77789999764 57888999999999999999999999875 37899999999999999
Q ss_pred hHHHHHHHHHHCCCC-EEEEEEeCCccccccccCccCCcchhhhHhhcCceEEE-EcCCCHHHHHHHHHHHHHHhHccCC
Q 023827 181 DFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGR 258 (276)
Q Consensus 181 ~~~Eal~~A~~~~Lp-vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~-vdg~d~~~v~~a~~~a~~~~r~~~~ 258 (276)
.+|||+++|+.++|| +|+||+||++++++++.... .+++.+++++|||++++ |||||++++.+|+++|.+. .++
T Consensus 162 ~~~EA~~~A~~~kL~nLi~ivD~N~~~idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~~---~~~ 237 (663)
T PRK12754 162 ISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARAV---TDK 237 (663)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEcCCCccCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHhc---CCC
Confidence 999999999999995 89999999999999998776 58999999999999999 8999999999999887642 578
Q ss_pred CEEEEEEEecCCCCC
Q 023827 259 PILIEVKCLSFSIFL 273 (276)
Q Consensus 259 P~lIe~~t~R~~g~~ 273 (276)
|++|+++|++..|.+
T Consensus 238 Pt~I~~~T~~g~G~~ 252 (663)
T PRK12754 238 PSLLMCKTIIGFGSP 252 (663)
T ss_pred CEEEEEEeeeccCcc
Confidence 999999999999976
No 18
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.97 E-value=7.9e-30 Score=234.43 Aligned_cols=215 Identities=24% Similarity=0.291 Sum_probs=156.0
Q ss_pred HHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhccCC---------CcEEEccCCcH------HHHHHcCC-CHHHH
Q 023827 47 TLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKN---------DDFVVPQYREP------GVLLWRGF-SMQEF 110 (276)
Q Consensus 47 ~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~~---------~D~~~~~yR~~------~~~~~~G~-~~~~~ 110 (276)
.+|..--.+......|+.+-.+++ -+...+.....|+. .|.++.+ .|| +.+...|+ ...+.
T Consensus 7 ~iR~~~~~~~~~a~sGH~G~~ls~--a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS-kGH~~~~lYa~l~~~G~~~~~~~ 83 (332)
T PF00456_consen 7 TIRKLILDMVQKAGSGHPGSSLSA--ADILYALYFKVLRYDPKNPKWPNRDRFVLS-KGHASPALYAILALRGYDLSEED 83 (332)
T ss_dssp HHHHHHHHHHHHHT-S-SHHHHHH--HHHHHHHHHHT-BBBTTBTTSTTS-EEEES-SGGGHHHHHHHHHHTTSSS-HHH
T ss_pred HHHHHHHHHHHHhCCCCCcchHHH--HHHHHHHHhhccccCCccccCCCCCcEEEe-ccchhHHHHHHHHHhcCCCCHHH
Confidence 344444445555566765433222 13333334445553 3665554 455 34446788 77777
Q ss_pred HHHhhcCCCCCCCCCCCccccCC-CCCCccccccccccccchhhhHHHHhhhcC----------CCceEEEEECCCcCCc
Q 023827 111 ANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGGTSE 179 (276)
Q Consensus 111 l~~~~~~~~~~~~G~~~~~h~~~-~~~~~~~~~g~lG~~l~~A~G~A~a~k~~~----------~~~~vv~~~GDG~~~~ 179 (276)
|.+|+. .|+.+++||.. ..+++..++|+||+|++.|+|+|+|.|+.+ .+.+|+|++|||+++|
T Consensus 84 L~~fr~------~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~E 157 (332)
T PF00456_consen 84 LKTFRQ------LGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQE 157 (332)
T ss_dssp HTTTTS------TTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHS
T ss_pred HHHhcc------CCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccc
Confidence 887875 37889999984 457888999999999999999999998642 3578999999999999
Q ss_pred chHHHHHHHHHHCCC-CEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEE-cCCCHHHHHHHHHHHHHHhHccC
Q 023827 180 GDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEG 257 (276)
Q Consensus 180 G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~v-dg~d~~~v~~a~~~a~~~~r~~~ 257 (276)
|.+|||+.+|+.++| ++|+|+++|+.++++++.... ..++.+++++|||.+++| ||||++++.+|+++|.. ..+
T Consensus 158 G~~~EA~~~A~~~~L~nLi~i~D~N~~q~dg~~~~~~-~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~---~~~ 233 (332)
T PF00456_consen 158 GSVWEAASLAGHYKLDNLIVIYDSNGIQIDGPTDIVF-SEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKA---SKG 233 (332)
T ss_dssp HHHHHHHHHHHHTT-TTEEEEEEEESEETTEEGGGTH-HSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHH---STS
T ss_pred hhhHHHHHHHHHhCCCCEEEEEecCCcccCCCccccc-chHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHh---cCC
Confidence 999999999999999 899999999999998887544 468999999999999998 99999999999998865 347
Q ss_pred CCEEEEEEEecCCCCCC
Q 023827 258 RPILIEVKCLSFSIFLS 274 (276)
Q Consensus 258 ~P~lIe~~t~R~~g~~~ 274 (276)
+|++|.++|.+..|-+.
T Consensus 234 kP~~Ii~~TvkG~G~~~ 250 (332)
T PF00456_consen 234 KPTVIIARTVKGKGVPF 250 (332)
T ss_dssp S-EEEEEEE-TTTTSTT
T ss_pred CCceeecceEEecCchh
Confidence 99999999999988753
No 19
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.97 E-value=4.9e-29 Score=248.03 Aligned_cols=214 Identities=21% Similarity=0.225 Sum_probs=164.2
Q ss_pred HhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhccC--CC-------cEEEccCCcHH------HHHHcCCC-HHHHH
Q 023827 48 LQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--ND-------DFVVPQYREPG------VLLWRGFS-MQEFA 111 (276)
Q Consensus 48 ~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~--~~-------D~~~~~yR~~~------~~~~~G~~-~~~~l 111 (276)
+|..--.+......|+++-.+++ -|...+.....|+ +. |.++.+ .||+ .+...|+. ..+.|
T Consensus 7 iR~~~~~~~~~a~~GH~g~~ls~--a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS-~GH~~~~lYa~l~~~G~~~~~e~L 83 (653)
T TIGR00232 7 IRHLAVDAIQKAKSGHPGAPLGA--APIAEVLWTKFLKFNPTNPKWINRDRFVLS-NGHGSMLLYSLLHLTGYDLSIEDL 83 (653)
T ss_pred HHHHHHHHHHhcCCCCccchhHH--HHHHHHHHHHhhcCCCCCCCCCCCCeEEEE-CccHHHHHHHHHHHcCCCCCHHHH
Confidence 44433344444455665432222 1333333334454 22 655443 4443 34567975 66667
Q ss_pred HHhhcCCCCCCCCCCCccccCC-CCCCccccccccccccchhhhHHHHhhhcC----------CCceEEEEECCCcCCcc
Q 023827 112 NQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGGTSEG 180 (276)
Q Consensus 112 ~~~~~~~~~~~~G~~~~~h~~~-~~~~~~~~~g~lG~~l~~A~G~A~a~k~~~----------~~~~vv~~~GDG~~~~G 180 (276)
.+|+.. |+.+++|+.. ..+++..++|++|+++++|+|+|+|.|+.+ .+.+|+|++|||++++|
T Consensus 84 ~~fr~~------~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG 157 (653)
T TIGR00232 84 KQFRQL------HSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEG 157 (653)
T ss_pred HhcccC------CCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEcccccccc
Confidence 778753 7778999976 357888899999999999999999999763 37889999999999999
Q ss_pred hHHHHHHHHHHCCCC-EEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEE-cCCCHHHHHHHHHHHHHHhHccCC
Q 023827 181 DFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGR 258 (276)
Q Consensus 181 ~~~Eal~~A~~~~Lp-vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~v-dg~d~~~v~~a~~~a~~~~r~~~~ 258 (276)
.+|||+++|+.|+|| +|+||+||+|++++++.... ..++++++++|||++++| ||||+.++.+|+++|.+ ..++
T Consensus 158 ~~~EA~~~A~~~~L~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a~~---~~~~ 233 (653)
T TIGR00232 158 ISYEVASLAGHLKLGKLIVLYDSNRISIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEAKA---SKDK 233 (653)
T ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCeeecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHh---CCCC
Confidence 999999999999995 89999999999999988876 578999999999999999 99999999988887753 1248
Q ss_pred CEEEEEEEecCCCCCC
Q 023827 259 PILIEVKCLSFSIFLS 274 (276)
Q Consensus 259 P~lIe~~t~R~~g~~~ 274 (276)
|++|+++|+|..|.+.
T Consensus 234 P~~I~~~T~~g~G~~~ 249 (653)
T TIGR00232 234 PTLIEVTTTIGFGSPN 249 (653)
T ss_pred CEEEEEEeeecccCcc
Confidence 9999999999999763
No 20
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.96 E-value=3.9e-29 Score=214.62 Aligned_cols=168 Identities=18% Similarity=0.184 Sum_probs=138.7
Q ss_pred CCcEEEcc--CCcHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccccccccccccchhhhHHHHhhhc
Q 023827 86 NDDFVVPQ--YREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMD 162 (276)
Q Consensus 86 ~~D~~~~~--yR~~~~~~~~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~-~~~~~~~g~lG~~l~~A~G~A~a~k~~ 162 (276)
+.|.++.+ |-..+.+...|. ++.|.+++.. |+ +++|+.... +++..++|++|+++|+|+|+|+|.|++
T Consensus 24 ~rDr~ils~gH~~~~~~~~~g~--~~~l~~~~~~------~~-~~g~p~~~~~~~~~~~~G~lG~gl~~A~G~Ala~k~~ 94 (195)
T cd02007 24 PKDKIIWDVGHQAYPHKILTGR--RDQFHTLRQY------GG-LSGFTKRSESEYDAFGTGHSSTSISAALGMAVARDLK 94 (195)
T ss_pred CCCeEEEecccHHHHHHHHHCC--HHHHhhhhcC------CC-CCCCCcCCCCCCceECCCchhhhHHHHHHHHHHHHHh
Confidence 34655544 333344555665 4456667643 44 888876543 566778999999999999999999999
Q ss_pred CCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEE-EcCCCHHH
Q 023827 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR-VDGNDALA 241 (276)
Q Consensus 163 ~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~-vdg~d~~~ 241 (276)
+++++|+|++|||++++|.+||++++|+.+++|+++||+||+|++++++. +..++++++||.... |||+|+++
T Consensus 95 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~~~------~~~~~~~a~G~~~~~~vdG~d~~~ 168 (195)
T cd02007 95 GKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVG------TPGNLFEELGFRYIGPVDGHNIEA 168 (195)
T ss_pred CCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCCCC------CHHHHHHhcCCCccceECCCCHHH
Confidence 98999999999999999999999999999988999999999999987765 477889999999985 99999999
Q ss_pred HHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 023827 242 IYSAVHAAREMAIGEGRPILIEVKCLSFSIF 272 (276)
Q Consensus 242 v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~ 272 (276)
+.+++++|.+ .++|++|+++|.+..|.
T Consensus 169 l~~a~~~a~~----~~~P~~I~~~T~kg~g~ 195 (195)
T cd02007 169 LIKVLKEVKD----LKGPVLLHVVTKKGKGY 195 (195)
T ss_pred HHHHHHHHHh----CCCCEEEEEEEecccCc
Confidence 9999887754 57999999999998874
No 21
>PRK12753 transketolase; Reviewed
Probab=99.96 E-value=1.1e-28 Score=245.76 Aligned_cols=167 Identities=23% Similarity=0.228 Sum_probs=146.1
Q ss_pred HHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccccccccccchhhhHHHHhhhcCC----------C
Q 023827 98 GVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDRK----------D 165 (276)
Q Consensus 98 ~~~~~~G~-~~~~~l~~~~~~~~~~~~G~~~~~h~~~~-~~~~~~~~g~lG~~l~~A~G~A~a~k~~~~----------~ 165 (276)
+++...|+ ...+.|.+|+.. |+..++|+... .+++..++|++|++++.|+|+|+|.|+.+. +
T Consensus 73 a~l~~~G~~~~~e~L~~fr~~------~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~ 146 (663)
T PRK12753 73 SLLHLTGYDLPIEELKNFRQL------HSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVD 146 (663)
T ss_pred HHHHHhCCCCCHHHHHHhccC------CCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccC
Confidence 34556786 566777888763 67788998763 578888999999999999999999998642 6
Q ss_pred ceEEEEECCCcCCcchHHHHHHHHHHCCC-CEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEE-EcCCCHHHHH
Q 023827 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR-VDGNDALAIY 243 (276)
Q Consensus 166 ~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~-vdg~d~~~v~ 243 (276)
.+|+|++|||++++|.+|||+++|+.++| ++|+|++||++++++++.... ..++.+++++|||+++. |||||+.+++
T Consensus 147 ~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~f~a~Gw~~~~~vDGhD~~~i~ 225 (663)
T PRK12753 147 HYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWF-TDDTAKRFEAYHWHVIHEIDGHDPQAIK 225 (663)
T ss_pred CEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCCcCCCChhhhc-ChhHHHHHHHcCCeEEceeCCCCHHHHH
Confidence 89999999999999999999999999999 589999999999999988755 57899999999999995 9999999999
Q ss_pred HHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 244 SAVHAAREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 244 ~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
+|+++|.+ ..++|++|+++|++..|++.
T Consensus 226 ~a~~~a~~---~~~~P~~I~~~T~kG~G~~~ 253 (663)
T PRK12753 226 EAILEAQS---VKDKPSLIICRTIIGFGSPN 253 (663)
T ss_pred HHHHHHHH---CCCCeEEEEEEEeecCCCCc
Confidence 99998875 25789999999999999874
No 22
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.96 E-value=5.2e-28 Score=223.72 Aligned_cols=182 Identities=18% Similarity=0.135 Sum_probs=153.5
Q ss_pred hccCC------CcEEEccCCcH------HHHHHcCCCHHHHHHHhhcCCCCCCCCC--CCccccCCC-CC-Ccccccccc
Q 023827 82 AAIKN------DDFVVPQYREP------GVLLWRGFSMQEFANQCFGNKADYGKGR--QMPIHYGSN-KH-NYFTVSSTI 145 (276)
Q Consensus 82 ~al~~------~D~~~~~yR~~------~~~~~~G~~~~~~l~~~~~~~~~~~~G~--~~~~h~~~~-~~-~~~~~~g~l 145 (276)
..|+. .|.|++ .+| +++...|+.+.+.|.+|+.. |+ +++.|+... .+ ++..++|++
T Consensus 49 ~~l~~~p~~~~RDRvlS--kGHas~~lYA~L~l~G~~~~edL~~fr~~------gs~p~l~g~p~~~~~~~gve~sTGSL 120 (386)
T cd02017 49 HFFRARGEGGGGDLVYF--QGHASPGIYARAFLEGRLTEEQLDNFRQE------VGGGGLSSYPHPWLMPDFWEFPTVSM 120 (386)
T ss_pred HhcCCCCCCCCCCEEEe--CCcccHHHHHHHHHcCCCCHHHHHhhccC------CCCCCCCCCCCCCCCCCCeeeCCchH
Confidence 45664 687554 555 34567898777778888764 44 577787653 24 478889999
Q ss_pred ccccchhhhHHHHhhh-------cCCCceEEEEECCCcCCcchHHHHHHHHHHCCC-CEEEEEEeCCccccccccCc-cC
Q 023827 146 ATQLPHAVGAAYALKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQ-FR 216 (276)
Q Consensus 146 G~~l~~A~G~A~a~k~-------~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~-~~ 216 (276)
|+|+++|+|+|+|.|+ .+.+.+|+|++|||++++|.+|||+++|+.++| |+|+|+++|+++++.++... ..
T Consensus 121 GqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qidG~t~~v~~~ 200 (386)
T cd02017 121 GLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKI 200 (386)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccCCcccccccC
Confidence 9999999999999997 456889999999999999999999999999999 99999999999999998875 36
Q ss_pred CcchhhhHhhcCceEEEEc-------------------------------------------------------------
Q 023827 217 SDGAVVKGRAYGVRSIRVD------------------------------------------------------------- 235 (276)
Q Consensus 217 ~~~~~~~a~a~G~~~~~vd------------------------------------------------------------- 235 (276)
..++.+++++|||.+++||
T Consensus 201 ~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~~~~~d~ 280 (386)
T cd02017 201 IQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDE 280 (386)
T ss_pred chhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHH
Confidence 6899999999999999998
Q ss_pred --------CCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 236 --------GNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 236 --------g~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
|||+.++.+|++++.+. .++|++|.++|.+..|-++
T Consensus 281 ~~~~~~~gGhD~~~i~~A~~~a~~~---~~kPt~Iia~TikG~G~~~ 324 (386)
T cd02017 281 DLWALNRGGHDPRKVYAAYKKAVEH---KGKPTVILAKTIKGYGLGA 324 (386)
T ss_pred hhhhhccCCCCHHHHHHHHHHHHhC---CCCCeEEEEeCeecCCCCh
Confidence 99999999999887752 4689999999999888653
No 23
>PTZ00089 transketolase; Provisional
Probab=99.96 E-value=1.3e-27 Score=238.20 Aligned_cols=177 Identities=24% Similarity=0.212 Sum_probs=149.5
Q ss_pred CcEEEcc--CCc---HHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccccccccccchhhhHHHHh
Q 023827 87 DDFVVPQ--YRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYAL 159 (276)
Q Consensus 87 ~D~~~~~--yR~---~~~~~~~G~-~~~~~l~~~~~~~~~~~~G~~~~~h~~~~-~~~~~~~~g~lG~~l~~A~G~A~a~ 159 (276)
.|.++.+ |.. .+++...|+ ...+.+.+|++. |+..++|+... .+++..++|++|++++.|+|+|+|.
T Consensus 59 rDr~vls~GH~~~~lYa~l~l~G~~~~~~~l~~fr~~------~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~ 132 (661)
T PTZ00089 59 RDRFVLSNGHASALLYSMLHLTGYDLSMEDLKNFRQL------GSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAE 132 (661)
T ss_pred CCEEEEeCcchHHHHHHHHHHcCCCCCHHHHHhcCCC------CCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHH
Confidence 4765443 555 345667886 566677778753 56678898754 4678888999999999999999999
Q ss_pred hhcCC----------CceEEEEECCCcCCcchHHHHHHHHHHCCC-CEEEEEEeCCccccccccCccCCcchhhhHhhcC
Q 023827 160 KMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (276)
Q Consensus 160 k~~~~----------~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (276)
|+.+. +.+|||++|||++++|.+|||+++|+.++| ++|+||+||++++++++... ...++.+++++||
T Consensus 133 k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~~~-~~~~~~~~f~a~G 211 (661)
T PTZ00089 133 KHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLS-FTEDVEKKYEAYG 211 (661)
T ss_pred HHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCcccccCcccc-cCccHHHHHHhcC
Confidence 98653 789999999999999999999999999999 58999999999999998765 3578999999999
Q ss_pred ceEEEE-cCC-CHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCC
Q 023827 229 VRSIRV-DGN-DALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFL 273 (276)
Q Consensus 229 ~~~~~v-dg~-d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~ 273 (276)
|+++.| ||| |+.++++++++|.+. .++|++|+++|+|..||.
T Consensus 212 ~~~i~v~dG~~D~~~l~~a~~~a~~~---~~~P~~I~~~T~kG~G~~ 255 (661)
T PTZ00089 212 WHVIEVDNGNTDFDGLRKAIEEAKKS---KGKPKLIIVKTTIGYGSS 255 (661)
T ss_pred CcEEEeCCCCCCHHHHHHHHHHHHhc---CCCcEEEEEEeeecCCCC
Confidence 999999 999 999999999988753 368999999999999963
No 24
>PRK05899 transketolase; Reviewed
Probab=99.95 E-value=3.4e-27 Score=234.56 Aligned_cols=176 Identities=25% Similarity=0.260 Sum_probs=148.8
Q ss_pred CcEEEccCCcH------HHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccccccccccchhhhHHHH
Q 023827 87 DDFVVPQYREP------GVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYA 158 (276)
Q Consensus 87 ~D~~~~~yR~~------~~~~~~G~-~~~~~l~~~~~~~~~~~~G~~~~~h~~~~-~~~~~~~~g~lG~~l~~A~G~A~a 158 (276)
.|.++.+ .|| +++...|+ ..++.+..++.. ++.++.|+... .+++...+|+||+++|.|+|+|+|
T Consensus 61 ~Dr~i~s-~GH~~~~~Ya~l~~~G~~~~~~~l~~~~~~------~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala 133 (624)
T PRK05899 61 RDRFVLS-AGHGSMLLYSLLHLAGYDLSIDDLKNFRQL------GSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALA 133 (624)
T ss_pred CCEEEEE-ChhHHHHHHHHHHHcCCCCCHHHHHHhcCC------CCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHH
Confidence 4766554 344 34667898 667777777643 45578888753 367777899999999999999999
Q ss_pred hhhcCC----------CceEEEEECCCcCCcchHHHHHHHHHHCCCC-EEEEEEeCCccccccccCccCCcchhhhHhhc
Q 023827 159 LKMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (276)
Q Consensus 159 ~k~~~~----------~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lp-vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (276)
.++.+. +++|||++|||++++|.+||++++|++++|| +++|++||+|+++.+... ....++++++++|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~~~-~~~~~~~~~~~a~ 212 (624)
T PRK05899 134 EKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPTEG-WFTEDVKKRFEAY 212 (624)
T ss_pred HHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCcccccccc-cccccHHHHhccC
Confidence 998776 7899999999999999999999999999995 899999999999887764 3357899999999
Q ss_pred CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 228 G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
||++++|||||++++.+++++|.+ .++|++|+++|+|.+||+.
T Consensus 213 G~~~~~VdG~d~~~l~~al~~a~~----~~~P~vI~v~t~kg~g~~~ 255 (624)
T PRK05899 213 GWHVIEVDGHDVEAIDAAIEEAKA----STKPTLIIAKTIIGKGAPN 255 (624)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHh----cCCCEEEEEEeEeccCCcc
Confidence 999999999999999999998875 3689999999999999973
No 25
>PLN02790 transketolase
Probab=99.95 E-value=2.3e-27 Score=236.22 Aligned_cols=178 Identities=21% Similarity=0.196 Sum_probs=149.5
Q ss_pred CcEEEcc--CCc---HHHHHHcCC--CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCccccccccccccchhhhHHHH
Q 023827 87 DDFVVPQ--YRE---PGVLLWRGF--SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYA 158 (276)
Q Consensus 87 ~D~~~~~--yR~---~~~~~~~G~--~~~~~l~~~~~~~~~~~~G~~~~~h~~~-~~~~~~~~~g~lG~~l~~A~G~A~a 158 (276)
.|.++.+ |-. .+++...|+ ...+.|.+|+.. |+..++|+.. ..+++..++|++|++++.|+|+|+|
T Consensus 47 rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~l~~~r~~------~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A 120 (654)
T PLN02790 47 RDRFVLSAGHGCMLQYALLHLAGYDSVQMEDLKQFRQW------GSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALA 120 (654)
T ss_pred CCEEEEeCcchHHHHHHHHHHcCCCCCCHHHHHHhccC------CCCCCCCCCCCCCCCccccCCchhchHHHHHHHHHH
Confidence 4766554 444 245667887 355667778753 6777899876 3578889999999999999999999
Q ss_pred hhh-----cCC-----CceEEEEECCCcCCcchHHHHHHHHHHCCCC-EEEEEEeCCccccccccCccCCcchhhhHhhc
Q 023827 159 LKM-----DRK-----DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (276)
Q Consensus 159 ~k~-----~~~-----~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lp-vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (276)
.|+ +++ +.+|+|++|||++++|.+|||+++|+.++|| +|+|++||++++++++.... ..++.+++++|
T Consensus 121 ~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~~i~~~~~~~~-~~~~~~~f~a~ 199 (654)
T PLN02790 121 EKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISIDGDTEIAF-TEDVDKRYEAL 199 (654)
T ss_pred HHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCccccCCccccc-chhHHHHHHHc
Confidence 995 332 6899999999999999999999999999995 99999999999999887643 57889999999
Q ss_pred CceEEEEcC--CCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 228 GVRSIRVDG--NDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 228 G~~~~~vdg--~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
||+++.||| ||++++++|+++|.+. .++|++|+++|++.+|.+.
T Consensus 200 G~~~~~vdgg~hd~~~l~~a~~~a~~~---~~~P~lI~~~T~kG~G~~~ 245 (654)
T PLN02790 200 GWHTIWVKNGNTDYDEIRAAIKEAKAV---TDKPTLIKVTTTIGYGSPN 245 (654)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhc---CCCeEEEEEEEeecCCCcc
Confidence 999999988 8999999999887752 5799999999999999864
No 26
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.95 E-value=2.4e-27 Score=233.72 Aligned_cols=226 Identities=18% Similarity=0.161 Sum_probs=167.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhccC-CCcEEEcc--CCcHHHHHHcC
Q 023827 28 SSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQ--YREPGVLLWRG 104 (276)
Q Consensus 28 ~~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~-~~D~~~~~--yR~~~~~~~~G 104 (276)
.|.++++.++|.++-. -++.+.++ +... ..|+++--.+.. |... ++-..++ +.|.++.+ |...+++...|
T Consensus 14 ~~~~~~~~~~l~~~a~-~iR~~~~~--~~~~-~~gH~g~~ls~~--~i~~-~L~~~~~~~rDr~ils~GH~~y~~~~~~g 86 (580)
T PRK05444 14 ADLKKLSEEELPQLAD-EIREFLID--VVSK-TGGHLGSNLGVV--ELTV-ALHYVFDTPKDRIIWDVGHQAYPHKILTG 86 (580)
T ss_pred HHHhcCCHHHHHHHHH-HHHHHHHH--HHHh-cCCCcCCCccHH--HHHH-HHHHhcCCCCccEEEeccHHHHHHHHHhC
Confidence 4567788887766533 23333443 3332 356654322211 3322 2223343 45765554 44445566678
Q ss_pred CCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccccccccccccchhhhHHHHhhhc-CCCceEEEEECCCcCCcchH
Q 023827 105 FSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMD-RKDACAVTYFGDGGTSEGDF 182 (276)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~-~~~~~~~g~lG~~l~~A~G~A~a~k~~-~~~~~vv~~~GDG~~~~G~~ 182 (276)
. .+.|.+|+.. |+ +++|+.... +++..++|++|+++|+|+|+|+|.|++ +++++|+|++|||++++|.+
T Consensus 87 ~--~~~l~~~~~~------~s-~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~ 157 (580)
T PRK05444 87 R--RDRFDTLRQK------GG-LSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMA 157 (580)
T ss_pred c--HHHhcCcccC------CC-CCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHH
Confidence 6 3456666643 44 778987644 678888999999999999999999988 58899999999999999999
Q ss_pred HHHHHHHHHCCCCEEEEEEeCCccccccccCc---cCCcchhhhHhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCC
Q 023827 183 HAALNFSAVTEAPVIFICRNNGWAISTPISDQ---FRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGR 258 (276)
Q Consensus 183 ~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~---~~~~~~~~~a~a~G~~~~-~vdg~d~~~v~~a~~~a~~~~r~~~~ 258 (276)
||++++|+++++|+++|++||+|++++++... ....++.+++++|||+++ .|||+|++++.++++++.+ .++
T Consensus 158 ~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~----~~~ 233 (580)
T PRK05444 158 FEALNNAGDLKSDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALIETLKNAKD----LKG 233 (580)
T ss_pred HHHHHHHHhhCCCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHHHHh----CCC
Confidence 99999999999999999999999998876543 233567789999999999 5999999999999987664 479
Q ss_pred CEEEEEEEecCCCCC
Q 023827 259 PILIEVKCLSFSIFL 273 (276)
Q Consensus 259 P~lIe~~t~R~~g~~ 273 (276)
|++|+++|.|..|.+
T Consensus 234 P~lI~~~T~kg~G~~ 248 (580)
T PRK05444 234 PVLLHVVTKKGKGYA 248 (580)
T ss_pred CEEEEEEecCCcCCC
Confidence 999999999999965
No 27
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.95 E-value=4e-26 Score=227.50 Aligned_cols=188 Identities=19% Similarity=0.198 Sum_probs=156.9
Q ss_pred HHHHHhccCC------CcEEEccCCcHH------HHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CC-ccccc
Q 023827 77 NIASAAAIKN------DDFVVPQYREPG------VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HN-YFTVS 142 (276)
Q Consensus 77 ~~~~~~al~~------~D~~~~~yR~~~------~~~~~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~-~~-~~~~~ 142 (276)
.+.....|+. .|.|++ .||+ .+...|+..++.|.+|+... .|+++++|++... ++ +..++
T Consensus 115 ~vLy~~~lr~~~~~~~rD~VlS--KGHasp~lYA~L~l~G~ls~e~L~~FRq~~----~g~gL~shPhp~~~p~~ve~sT 188 (885)
T TIGR00759 115 EVGFNHFFRGHSEGGGGDLVFF--QGHAAPGIYARAFLEGRLTEEQLDNFRQEV----QGDGLSSYPHPWLMPDFWQFPT 188 (885)
T ss_pred HHHHHHhcCCCCCCCCCCEEEE--CCcHHHHHHHHHHHcCCCCHHHHHHhcCCC----CCCCCCCCCCcCcCCCCEEeCC
Confidence 3344445653 687665 5553 35568988888899887531 1567888887543 44 67889
Q ss_pred cccccccchhhhHHHHhhh-------cCCCceEEEEECCCcCCcchHHHHHHHHHHCCC-CEEEEEEeCCccccccccCc
Q 023827 143 STIATQLPHAVGAAYALKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQ 214 (276)
Q Consensus 143 g~lG~~l~~A~G~A~a~k~-------~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~ 214 (276)
||||+|++.|+|+|++.|+ +..+++|||++|||+++||++|||+.+|++++| |+|+||++|..++++++...
T Consensus 189 GSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~ 268 (885)
T TIGR00759 189 VSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDGPVRGN 268 (885)
T ss_pred CCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccc
Confidence 9999999999999999997 567889999999999999999999999999999 99999999999999998875
Q ss_pred cC-CcchhhhHhhcCceEEEE-----------------------------------------------------------
Q 023827 215 FR-SDGAVVKGRAYGVRSIRV----------------------------------------------------------- 234 (276)
Q Consensus 215 ~~-~~~~~~~a~a~G~~~~~v----------------------------------------------------------- 234 (276)
.. ..++.++++++||.+++|
T Consensus 269 ~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~ 348 (885)
T TIGR00759 269 GKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADM 348 (885)
T ss_pred cccchhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhcc
Confidence 44 578999999999999999
Q ss_pred ----------cCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCC
Q 023827 235 ----------DGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFL 273 (276)
Q Consensus 235 ----------dg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~ 273 (276)
+|||+.+|++|++.|.+. .++|++|.++|.+..|.+
T Consensus 349 sD~~i~~l~rgGHD~~~I~~A~~~A~~~---~grPTvIlA~TvKG~G~~ 394 (885)
T TIGR00759 349 SDADIWALNRGGHDPRKVYAAYAAAQEH---KGQPTVILAKTIKGYGMG 394 (885)
T ss_pred chhhhhhccCCCCCHHHHHHHHHHHHhC---CCCCEEEEEeeeecCCCC
Confidence 599999999999988763 458999999999999876
No 28
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.94 E-value=2.1e-26 Score=228.51 Aligned_cols=262 Identities=17% Similarity=0.164 Sum_probs=213.1
Q ss_pred CCCCCeeEeeCCCCC-CCCC---CCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHh-cCcccccccCChhHHHHHHHHhc
Q 023827 9 EERIPCYRVLDDDGQ-PFPD---SSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR-QGRISFYLTTSGEEAINIASAAA 83 (276)
Q Consensus 9 ~~~~~~~~~~~~~g~-~~~~---~~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~-~g~~~~~~~~~G~Ea~~~~~~~a 83 (276)
+.++++-+|.|++.. ++++ ....+.+.++.+.+++++..+-.||.++..+|- |. +| +..|-|.+...+-..
T Consensus 462 ~vg~EymhI~dpeqr~W~Q~rvE~~~~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqk--RF--slEG~Es~iplld~~ 537 (1228)
T PRK12270 462 TVGIEYMHIQDPEQRRWLQERVERPHEKPTREEQKRILSKLNAAEAFETFLQTKYVGQK--RF--SLEGGESLIPLLDAV 537 (1228)
T ss_pred hheeeeeecCCHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhhhHHHHHHHHhhhcccce--ee--eecchhhHHHHHHHH
Confidence 357788889988865 2333 235789999999999999999999999988773 33 34 457878876655444
Q ss_pred cC------CCcEEEcc-CCcHHHHHH--cCCCHHHHHHHhhcCCCCC-CCCCC-CccccCCCC-----------CCcccc
Q 023827 84 IK------NDDFVVPQ-YREPGVLLW--RGFSMQEFANQCFGNKADY-GKGRQ-MPIHYGSNK-----------HNYFTV 141 (276)
Q Consensus 84 l~------~~D~~~~~-yR~~~~~~~--~G~~~~~~l~~~~~~~~~~-~~G~~-~~~h~~~~~-----------~~~~~~ 141 (276)
|+ -+++++++ |||+-..|+ .|.+..++|.||-|+.+.. ..|++ ...|..... ..+..+
T Consensus 538 ~~~aa~~~l~evvigm~HRGRLNVLani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaN 617 (1228)
T PRK12270 538 LDQAAEHGLDEVVIGMAHRGRLNVLANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAAN 617 (1228)
T ss_pred HHHHHhcCCceEEecccccchHHHHHHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEEEecC
Confidence 43 35788884 999987775 5999999999999986542 34544 456654321 123455
Q ss_pred ccccccccchhhhHHHHhhhc---C---CCceEEEEECCCcC-CcchHHHHHHHHHHCCCC---EEEEEEeCCccccccc
Q 023827 142 SSTIATQLPHAVGAAYALKMD---R---KDACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPI 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~---~---~~~~vv~~~GDG~~-~~G~~~Eal~~A~~~~Lp---vi~vv~nN~~~~~~~~ 211 (276)
.++|-.--|+.-|+..|.+.. + -....+++.||++| .+|.+.|.||+|..+++| +|+||.||+++++|..
T Consensus 618 PSHLEavdpVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p 697 (1228)
T PRK12270 618 PSHLEAVDPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAP 697 (1228)
T ss_pred chhhhhcchHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCc
Confidence 788999999999999998642 1 24578999999998 899999999999999998 9999999999999988
Q ss_pred cCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 212 SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 212 ~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
....+.....++++++++|++.|||+|++++.++.+.|+++++++++|++||+.|||.+|||+
T Consensus 698 ~~~Rss~y~td~ak~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNE 760 (1228)
T PRK12270 698 ESSRSSEYATDVAKMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNE 760 (1228)
T ss_pred cccccchhhHHHHhhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCC
Confidence 777777778899999999999999999999999999999999999999999999999999986
No 29
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=99.94 E-value=3.6e-26 Score=226.26 Aligned_cols=226 Identities=16% Similarity=0.181 Sum_probs=166.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhccC-CCcEEEcc--CCcHHHHHHcCC
Q 023827 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQ--YREPGVLLWRGF 105 (276)
Q Consensus 29 ~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~-~~D~~~~~--yR~~~~~~~~G~ 105 (276)
|.+.++.++|.++-.. ++.+.++. .. ...|+++ ++.|-=-+.+++-..++ +.|.++.. |...++++..|+
T Consensus 9 dl~~l~~~~l~~la~~-iR~~~i~~--~~-~~~GH~g---~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y~~~~~~G~ 81 (617)
T TIGR00204 9 ELRLLSIDELEKLCDE-LRRYLLES--VS-ASGGHLA---SGLGTVELTVALHYVFNTPKDQFIWDVGHQAYPHKLLTGR 81 (617)
T ss_pred HHhhCCHHHHHHHHHH-HHHHHHHH--Hh-ccCCCcC---cchhHHHHHHHHHhhCCCCCCcEEEecchHHHHHHHHhCc
Confidence 4567787776655433 33333433 22 2445543 23332112233334555 56766554 555567778897
Q ss_pred CHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcc-ccccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHH
Q 023827 106 SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF-TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHA 184 (276)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~~~~~-~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~E 184 (276)
.+.|.+++.. |+ +++|+....+++. .++|++|+++++|+|+|+|.|+++.+.+|+|++|||++++|.+||
T Consensus 82 --~~~l~~~r~~------g~-l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~E 152 (617)
T TIGR00204 82 --REKFSTLRQK------KG-LHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFE 152 (617)
T ss_pred --HHHhcchhhc------CC-cCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHH
Confidence 3557777653 44 8888876555555 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCEEEEEEeCCccccccccCccC------------------------Cc---c-hhhh-------------
Q 023827 185 ALNFSAVTEAPVIFICRNNGWAISTPISDQFR------------------------SD---G-AVVK------------- 223 (276)
Q Consensus 185 al~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~------------------------~~---~-~~~~------------- 223 (276)
|++.|+.++||+|+||+||++++++++..... .+ + ++++
T Consensus 153 a~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 232 (617)
T TIGR00204 153 ALNHAGDLKTDMIVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVPGT 232 (617)
T ss_pred HHHHHHhcCCCEEEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCccc
Confidence 99999999999999999999999887652210 01 1 3333
Q ss_pred -HhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 224 -GRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 224 -a~a~G~~~~-~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
+++|||.++ .|||||+.++.++++.+.+ .++|++|+++|.|.+|.++
T Consensus 233 ~f~~~G~~~~~~vDGhd~~~l~~al~~ak~----~~~P~~i~~~T~KGkG~~~ 281 (617)
T TIGR00204 233 FFEELGFNYIGPVDGHDLLELIETLKNAKK----LKGPVFLHIQTKKGKGYKP 281 (617)
T ss_pred hHHHcCCcEEcccCCCCHHHHHHHHHHHhc----CCCCEEEEEEecCCCCCch
Confidence 899999999 8999999999999986654 4689999999999999754
No 30
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.94 E-value=2.4e-25 Score=224.02 Aligned_cols=247 Identities=18% Similarity=0.194 Sum_probs=175.7
Q ss_pred CCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHh----cCcccccccCChhHHHHHHHHhccCC-
Q 023827 12 IPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR----QGRISFYLTTSGEEAINIASAAAIKN- 86 (276)
Q Consensus 12 ~~~~~~~~~~g~~~~~~~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~----~g~~~~~~~~~G~Ea~~~~~~~al~~- 86 (276)
+|++.....+-++.. ..+.++.+-....++...++........ .|+++-..++ -+...+.....|+.
T Consensus 54 t~y~nti~~~~~~~~------pgd~~~~~~~a~~iR~~a~~mv~~A~~~~~~~gGH~gs~lS~--a~i~~vLy~~~lr~~ 125 (889)
T TIGR03186 54 TPYVNTIAVDQEPPY------PGDLQLEERLAAILRWNALAMVVRANRAYGELGGHIASYASA--ADLFEVGFNHFFRAA 125 (889)
T ss_pred CCCccCCCCcCCCCC------CCCHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcCcHHH--HHHHHHHHHHhCCCC
Confidence 555555554433321 1233455555555555555443322111 2343322221 13333444455663
Q ss_pred -----CcEEEcc-CCcHH---HHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CC-ccccccccccccchhhhH
Q 023827 87 -----DDFVVPQ-YREPG---VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HN-YFTVSSTIATQLPHAVGA 155 (276)
Q Consensus 87 -----~D~~~~~-yR~~~---~~~~~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~-~~-~~~~~g~lG~~l~~A~G~ 155 (276)
+|+|++. |-..+ .+...|+..++.|.+|+... .+++++.|++... ++ +..++||||+|++.|+|+
T Consensus 126 ~~~~~rD~VlskGHasp~lYA~l~l~G~l~~e~L~~fRq~~----~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~ 201 (889)
T TIGR03186 126 GDASGGDLVYFQPHSAPGVYARAFLEGFLSDAQLAHYRQEI----AGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQ 201 (889)
T ss_pred CCCCCCCEEEECCchHHHHHHHHHHcCCCCHHHHHHhcCCC----CCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHH
Confidence 6876663 33332 34567988888888887532 2456666554332 44 677899999999999999
Q ss_pred HHHhhhc-------CCCceEEEEECCCcCCcchHHHHHHHHHHCCC-CEEEEEEeCCccccccccCccC-CcchhhhHhh
Q 023827 156 AYALKMD-------RKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRA 226 (276)
Q Consensus 156 A~a~k~~-------~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~-~~~~~~~a~a 226 (276)
|++.|+. ..+.+|||++|||+++||++|||+.+|++++| |+|+||++|..++++++..... ..++.+++++
T Consensus 202 Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a 281 (889)
T TIGR03186 202 ARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAG 281 (889)
T ss_pred HHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHh
Confidence 9998843 23689999999999999999999999999999 9999999999999999887444 5789999999
Q ss_pred cCceEEEE---------------------------------------------------------------------cCC
Q 023827 227 YGVRSIRV---------------------------------------------------------------------DGN 237 (276)
Q Consensus 227 ~G~~~~~v---------------------------------------------------------------------dg~ 237 (276)
|||.+++| +||
T Consensus 282 ~GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGH 361 (889)
T TIGR03186 282 AGWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGH 361 (889)
T ss_pred CCCEEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCC
Confidence 99999999 599
Q ss_pred CHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCC
Q 023827 238 DALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFL 273 (276)
Q Consensus 238 d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~ 273 (276)
|+.+|++|+++|.+. .++|++|.++|.+..|.+
T Consensus 362 D~~~i~~A~~~A~~~---~~~PTvIla~TvkG~G~~ 394 (889)
T TIGR03186 362 DARKLYAAYDRAVRH---EGRPTVILAKTMKGFGMG 394 (889)
T ss_pred CHHHHHHHHHHHHhC---CCCCEEEEEEeeecCCCC
Confidence 999999999998863 468999999999988863
No 31
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.93 E-value=9.9e-25 Score=220.38 Aligned_cols=245 Identities=18% Similarity=0.183 Sum_probs=178.2
Q ss_pred CCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhc----CcccccccCChhHHHHHHHHhccC--
Q 023827 12 IPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQ----GRISFYLTTSGEEAINIASAAAIK-- 85 (276)
Q Consensus 12 ~~~~~~~~~~g~~~~~~~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~----g~~~~~~~~~G~Ea~~~~~~~al~-- 85 (276)
+|++.....+.++.. ..+.++.+-.+..++...++......... |+++-+.++ -+...+.....|+
T Consensus 68 t~y~nti~~~~~~~~------pgd~~~e~~i~~~iR~~a~~mv~~A~~~~~~~GGH~~s~~S~--a~i~~vl~~~~~r~~ 139 (896)
T PRK13012 68 TPYVNTIPVDQQPPY------PGDLALEERLAAIIRWNALAMVVRANRAYGELGGHIASYASA--ADLFEVGFNHFFRGR 139 (896)
T ss_pred CCCccCCChhhcCCC------CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccHHH--HHHHHHHHHhhcCCC
Confidence 455555544433321 12334555455555555554443222112 333222211 1223334445566
Q ss_pred ----CCcEEEccCCcHH------HHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CC-ccccccccccccchhh
Q 023827 86 ----NDDFVVPQYREPG------VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HN-YFTVSSTIATQLPHAV 153 (276)
Q Consensus 86 ----~~D~~~~~yR~~~------~~~~~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~-~~-~~~~~g~lG~~l~~A~ 153 (276)
..|.|++ .+|+ .+...|+..++.|..|+... .+.++++||+... ++ +..++||||.|++.|+
T Consensus 140 ~~~~~~D~V~s--kGHasp~lYA~~~l~G~l~~e~L~~fR~~~----~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai 213 (896)
T PRK13012 140 DDAGGGDLVYF--QPHSAPGIYARAFLEGRLSEEQLDHFRQEI----GGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAI 213 (896)
T ss_pred CCCCCCCEEEE--CcchHHHHHHHHHHcCCCCHHHHHHhcCCC----CCCCCCCCCCcCCCCCCEecCCCCchHHHHHHH
Confidence 4687665 4553 34567988888898887532 1567888887654 44 6678999999999999
Q ss_pred hHHHHhhh-------cCCCceEEEEECCCcCCcchHHHHHHHHHHCCC-CEEEEEEeCCccccccccCccC-CcchhhhH
Q 023827 154 GAAYALKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKG 224 (276)
Q Consensus 154 G~A~a~k~-------~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~-~~~~~~~a 224 (276)
|.|++.|| +..+++|||++|||+++||+.|||+.+|++++| |+|+||++|..++++++..... ..++.+++
T Consensus 214 ~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f 293 (896)
T PRK13012 214 YQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALF 293 (896)
T ss_pred HHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccCccccccccchHHHHHH
Confidence 99999994 456789999999999999999999999999999 9999999999999999887544 47899999
Q ss_pred hhcCceEEEE--------------------------c-------------------------------------------
Q 023827 225 RAYGVRSIRV--------------------------D------------------------------------------- 235 (276)
Q Consensus 225 ~a~G~~~~~v--------------------------d------------------------------------------- 235 (276)
+++||.+++| |
T Consensus 294 ~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rg 373 (896)
T PRK13012 294 RGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRG 373 (896)
T ss_pred HhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCC
Confidence 9999999999 8
Q ss_pred CCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCC
Q 023827 236 GNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFL 273 (276)
Q Consensus 236 g~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~ 273 (276)
|||+.+|++|+++|.+. .++|++|.++|.+..|.+
T Consensus 374 GHD~~~i~~A~~~a~~~---~~~PtvIla~TvkG~G~~ 408 (896)
T PRK13012 374 GHDPRKVYAAYAAAVRH---KGQPTVILAKTKKGYGMG 408 (896)
T ss_pred CCCHHHHHHHHHHHHhC---CCCCEEEEEEeeecCCCC
Confidence 99999999999988763 458999999999999865
No 32
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.93 E-value=9.4e-26 Score=195.95 Aligned_cols=183 Identities=22% Similarity=0.300 Sum_probs=150.4
Q ss_pred ChhHHHHHHHHhccCC-CcEEEccCCcHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccccc
Q 023827 71 SGEEAINIASAAAIKN-DDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 149 (276)
Q Consensus 71 ~G~Ea~~~~~~~al~~-~D~~~~~yR~~~~~~~~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l 149 (276)
.||++.++.+...|.. .|.+++.|+... .| +++++.+|. . .|+ +++|+....+++...+|+||+++
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~----~g--l~~lf~qfs-~-----~gg-~psH~~~~tpGi~~~~G~LG~gL 68 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDE----EG--MRKLFKQFS-F-----PGG-IPSHAAPETPGSIHEGGELGYSL 68 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccH----HH--HHHHHHhcC-C-----CCC-CCCCCcccCCCeeecccchhhHH
Confidence 6899998888888876 599999998764 12 255667762 1 233 89999887789999999999999
Q ss_pred chhhhHHHHhhhcCCCceEEEEECCCcCCcchH---HHHHHHHHHCCC-CEEEEEEeCCccccccccCc-cCCcchhhhH
Q 023827 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF---HAALNFSAVTEA-PVIFICRNNGWAISTPISDQ-FRSDGAVVKG 224 (276)
Q Consensus 150 ~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~---~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~-~~~~~~~~~a 224 (276)
++|+|+|+ ++++.+|+|++|||++++|.+ |++..++..+++ +|+.|++||+|++++++... .+..++.+++
T Consensus 69 s~A~G~a~----d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~ 144 (227)
T cd02011 69 SHAYGAVF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALF 144 (227)
T ss_pred HHHHHhhh----cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHH
Confidence 99999985 456899999999999999996 999999999999 89999999999999999855 5678899999
Q ss_pred hhcCceEEEEcCCCHHHHHHHHHHHHHHh-----------HccC---CCE--EEEEEEecCC
Q 023827 225 RAYGVRSIRVDGNDALAIYSAVHAAREMA-----------IGEG---RPI--LIEVKCLSFS 270 (276)
Q Consensus 225 ~a~G~~~~~vdg~d~~~v~~a~~~a~~~~-----------r~~~---~P~--lIe~~t~R~~ 270 (276)
++|||+++.|||+|++++++++++|++++ |+++ +|. +|.++|.+.+
T Consensus 145 ~~yG~~~~~VDG~D~~av~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~wp~~~~~~~kg~ 206 (227)
T cd02011 145 RGYGYEPYFVEGDDPETMHQAMAATLDWAIEEIKAIQKRAREGGDASRPRWPMIVLRTPKGW 206 (227)
T ss_pred HhCCCceEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCEEEEeCCCCC
Confidence 99999999999999999999998887643 3222 342 5677776654
No 33
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.93 E-value=1.3e-24 Score=213.93 Aligned_cols=185 Identities=15% Similarity=0.105 Sum_probs=144.9
Q ss_pred HHHhccC-CCcEEEcc--CCcHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccccccccccccchhhh
Q 023827 79 ASAAAIK-NDDFVVPQ--YREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVG 154 (276)
Q Consensus 79 ~~~~al~-~~D~~~~~--yR~~~~~~~~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~-~~~~~~~g~lG~~l~~A~G 154 (276)
++-..|+ |.|.++.. |-..++++..|.. +.|.+++.. |+ +++|+.... ++...++|++|+++++|+|
T Consensus 118 aL~~vf~~p~DriI~s~GHqaya~~~ltgr~--~~l~t~r~~------gg-l~G~p~~~es~~d~~~tGslg~glS~a~G 188 (641)
T PLN02234 118 ALHYIFNTPHDKILWDVGHQSYPHKILTGRR--GKMKTIRQT------NG-LSGYTKRRESEHDSFGTGHSSTTLSAGLG 188 (641)
T ss_pred HHHHhcCCCCCeEEEecchhHHHHHHHHhhh--hhhcccccC------CC-cCCCCCCCCCCCcEECCCchHHHHHHHHH
Confidence 3333444 67877764 4444666666763 235556543 33 788887643 5777889999999999999
Q ss_pred HHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCcc------ccccccCccCC-----------
Q 023827 155 AAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA------ISTPISDQFRS----------- 217 (276)
Q Consensus 155 ~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~------~~~~~~~~~~~----------- 217 (276)
+|+|.++++.+.+|||++|||++++|.+|||++.|+..+-|+|+|+++|+.+ .++++......
T Consensus 189 mA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~ 268 (641)
T PLN02234 189 MAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNC 268 (641)
T ss_pred HHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhccc
Confidence 9999999999999999999999999999999999996666999999999983 44444432221
Q ss_pred ----cchhhhHhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 218 ----DGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 218 ----~~~~~~a~a~G~~~~-~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
.++.+++++|||.++ .|||||++++.++++++... +.++|++|.++|.+.+|.+.
T Consensus 269 ~~~~~~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~--~~~~P~vI~~~T~KGkGv~~ 328 (641)
T PLN02234 269 GMIRETSSTLFEELGFHYVGPVDGHNIDDLVSILETLKST--KTIGPVLIHVVTEKGRGYPY 328 (641)
T ss_pred ccccCCHHHHHHHcCCEEEeeECCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEecCCCcch
Confidence 356789999999999 99999999999999886542 23589999999999999874
No 34
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.93 E-value=2.9e-24 Score=213.40 Aligned_cols=227 Identities=19% Similarity=0.212 Sum_probs=160.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhccC-CCcEEEcc--CCcHHHHHHcC
Q 023827 28 SSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQ--YREPGVLLWRG 104 (276)
Q Consensus 28 ~~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~-~~D~~~~~--yR~~~~~~~~G 104 (276)
.|..+++.++|.++-.. ++.+.++.. ... .|+++ ++.|-=-+.+++-..++ |.|.++.+ |-..++++..|
T Consensus 16 ~dl~~l~~~~l~~~a~~-iR~~ii~~~--~~~-~GH~g---~~ls~vel~~aL~~~~~~prDr~i~s~GH~~Y~~~~l~g 88 (641)
T PRK12571 16 ADLRALSDAELEQLADE-LRAEVISAV--SET-GGHLG---SSLGVVELTVALHAVFNTPKDKLVWDVGHQCYPHKILTG 88 (641)
T ss_pred HHHHhCCHHHHHHHHHH-HHHHHHHHH--HHh-CCCcC---CCchHHHHHHHHHHhcCCCCCcEEEECchHHHHHHHHhC
Confidence 45678888777766333 333344333 222 46554 23332112233333443 56766553 55556677778
Q ss_pred CCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccccccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHH
Q 023827 105 FSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFH 183 (276)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~-~~~~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~ 183 (276)
. .+.|..++.. |+ +++|+...+ +.-....++-+.++++|+|+|+|.++.+++++|+|++|||++++|.+|
T Consensus 89 ~--~~~l~~~r~~------~~-l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~ 159 (641)
T PRK12571 89 R--RDRFRTLRQK------GG-LSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGMAY 159 (641)
T ss_pred C--HHHHhhhhhC------CC-cCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchHH
Confidence 6 5667777753 43 777776543 221122343455678899999999998889999999999999999999
Q ss_pred HHHHHHHHCCCCEEEEEEeCCcccccccc-------CccCCcch-----------------------------------h
Q 023827 184 AALNFSAVTEAPVIFICRNNGWAISTPIS-------DQFRSDGA-----------------------------------V 221 (276)
Q Consensus 184 Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~-------~~~~~~~~-----------------------------------~ 221 (276)
|++++|+++++|+++|++||++++++++. +......+ .
T Consensus 160 Eal~~a~~~~~~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (641)
T PRK12571 160 EALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGGG 239 (641)
T ss_pred HHHHHHHHhCCCEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhccchh
Confidence 99999999999999999999999988774 21112111 4
Q ss_pred hhHhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCC
Q 023827 222 VKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFL 273 (276)
Q Consensus 222 ~~a~a~G~~~~-~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~ 273 (276)
+++++|||.++ .|||||.+++.++++++.+. .++|++|.++|.+..|.+
T Consensus 240 ~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~---~~~P~~I~~~T~kGkG~~ 289 (641)
T PRK12571 240 TLFEELGFTYVGPIDGHDMEALLSVLRAARAR---ADGPVLVHVVTEKGRGYA 289 (641)
T ss_pred hHHHHcCCEEECccCCCCHHHHHHHHHHHHhC---CCCCEEEEEEecCccCcc
Confidence 78999999999 79999999999999887642 368999999999999975
No 35
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.92 E-value=7.1e-24 Score=213.54 Aligned_cols=227 Identities=18% Similarity=0.195 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhc----CcccccccCChhHHHHHHHHhccCC------CcEEEccCCcHH------
Q 023827 35 EGVAIKMYNDMVTLQTMDTIFYEAQRQ----GRISFYLTTSGEEAINIASAAAIKN------DDFVVPQYREPG------ 98 (276)
Q Consensus 35 ~~~l~~ly~~m~~~R~~d~~~~~~~~~----g~~~~~~~~~G~Ea~~~~~~~al~~------~D~~~~~yR~~~------ 98 (276)
+.++.+..+..++...++......... |+++-+.++ -+...+.....|+. +|+|++ .+|+
T Consensus 77 ~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~--a~i~~vl~~~~~r~~~~~~~~D~V~s--kGHasp~lYA 152 (891)
T PRK09405 77 DLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASS--ATLYEVGFNHFFRAPNEPHGGDLVFF--QGHASPGIYA 152 (891)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHH--HHHHHHHHHhhCCCCCCCCCCCEEEE--CchHHHHHHH
Confidence 455666666777766665544322211 332221111 12233444455664 687775 4553
Q ss_pred HHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CC-ccccccccccccchhhhHHHHhhh-------cCCCceEE
Q 023827 99 VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HN-YFTVSSTIATQLPHAVGAAYALKM-------DRKDACAV 169 (276)
Q Consensus 99 ~~~~~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~-~~-~~~~~g~lG~~l~~A~G~A~a~k~-------~~~~~~vv 169 (276)
.+...|+..++.|..|+.. ..|+++++||+... ++ +..++++||.|++.|+|+|++.|+ +..+++||
T Consensus 153 ~~~l~G~l~~e~L~~fR~~----~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~ 228 (891)
T PRK09405 153 RAFLEGRLTEEQLDNFRQE----VDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVW 228 (891)
T ss_pred HHHHcCCCCHHHHHHhcCC----CCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCceEE
Confidence 3456798888889988754 23678899887644 44 556789999999999999999994 45678999
Q ss_pred EEECCCcCCcchHHHHHHHHHHCCC-CEEEEEEeCCccccccccCccC-CcchhhhHhhcCceEEEE-------------
Q 023827 170 TYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV------------- 234 (276)
Q Consensus 170 ~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~-~~~~~~~a~a~G~~~~~v------------- 234 (276)
|++|||+++||+.|||+.+|++++| |+|+||++|..++++++..... ..++.+++++|||.+++|
T Consensus 229 ~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d 308 (891)
T PRK09405 229 AFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKD 308 (891)
T ss_pred EEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhhccC
Confidence 9999999999999999999999999 9999999999999999886433 578999999999999999
Q ss_pred -------------c-------------------------------------------CCCHHHHHHHHHHHHHHhHccCC
Q 023827 235 -------------D-------------------------------------------GNDALAIYSAVHAAREMAIGEGR 258 (276)
Q Consensus 235 -------------d-------------------------------------------g~d~~~v~~a~~~a~~~~r~~~~ 258 (276)
| |||+.++++|+++|.+. .++
T Consensus 309 ~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~---~~~ 385 (891)
T PRK09405 309 TSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEH---KGQ 385 (891)
T ss_pred CccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC---CCC
Confidence 4 99999999999988863 468
Q ss_pred CEEEEEEEecCCCC
Q 023827 259 PILIEVKCLSFSIF 272 (276)
Q Consensus 259 P~lIe~~t~R~~g~ 272 (276)
|++|.++|.+..|.
T Consensus 386 PtvIia~TvkG~G~ 399 (891)
T PRK09405 386 PTVILAKTIKGYGM 399 (891)
T ss_pred CEEEEEeceecCCC
Confidence 99999999999997
No 36
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=4.3e-24 Score=205.33 Aligned_cols=215 Identities=22% Similarity=0.221 Sum_probs=164.7
Q ss_pred HHHhhHHHHHHHHHhcCcccccccCCh-hHHHHHHHHhccC--C-------CcEEEccCCcHHH------HHHcCC-CHH
Q 023827 46 VTLQTMDTIFYEAQRQGRISFYLTTSG-EEAINIASAAAIK--N-------DDFVVPQYREPGV------LLWRGF-SMQ 108 (276)
Q Consensus 46 ~~~R~~d~~~~~~~~~g~~~~~~~~~G-~Ea~~~~~~~al~--~-------~D~~~~~yR~~~~------~~~~G~-~~~ 108 (276)
-.+|.+-..+.++...|+-+. .+| -+.+.+.....|+ | .|-++.+ -||+- +...|+ ...
T Consensus 11 naiR~Ls~davqkAnSGHPG~---pmG~A~ia~~L~~~~l~~nP~nP~W~nRDRFVLS-aGHgSmllYsllhl~Gy~ls~ 86 (663)
T COG0021 11 NAIRFLSMDAVQKANSGHPGA---PMGAADIAYVLWTRFLKHNPDNPKWINRDRFVLS-AGHGSMLLYSLLHLTGYDLSL 86 (663)
T ss_pred HHHHHHHHHHHHhccCCCCCC---CccHHHHHHHHHHHHhcCCCCCCCCCCCccEEec-CCchhHHHHHHHHHccCCCCH
Confidence 345666656666666776432 233 1223333334443 2 2543333 24432 223576 455
Q ss_pred HHHHHhhcCCCCCCCCCCCccccCCC-CCCccccccccccccchhhhHHHHhhhcC-----C-----CceEEEEECCCcC
Q 023827 109 EFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDR-----K-----DACAVTYFGDGGT 177 (276)
Q Consensus 109 ~~l~~~~~~~~~~~~G~~~~~h~~~~-~~~~~~~~g~lG~~l~~A~G~A~a~k~~~-----~-----~~~vv~~~GDG~~ 177 (276)
+.|.+|+.. ++..|+||... .+++..++|+||+|++.|+|+|+|.++.+ + |..++|++|||++
T Consensus 87 edLk~FRQ~------~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGcl 160 (663)
T COG0021 87 EDLKNFRQL------GSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCL 160 (663)
T ss_pred HHHHhhccC------CCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchH
Confidence 667778874 78899999844 67888999999999999999999998632 1 4699999999999
Q ss_pred CcchHHHHHHHHHHCCC-CEEEEEEeCCccccccccCccCCcchhhhHhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHc
Q 023827 178 SEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIG 255 (276)
Q Consensus 178 ~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-~vdg~d~~~v~~a~~~a~~~~r~ 255 (276)
+||..+||..+|..++| ++|++.++|+.+|++.+...+ .+|..+++++|||+++ .+||+|++++.+|+++|+. .
T Consensus 161 mEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f-~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~---~ 236 (663)
T COG0021 161 MEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSF-TEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKA---S 236 (663)
T ss_pred hcccHHHHHHHHhhcCCCcEEEEEeCCCceeccCccccc-chhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHh---c
Confidence 99999999999999999 999999999999999888765 6889999999999999 8899999999999999986 3
Q ss_pred cCCCEEEEEEEecCCCCCC
Q 023827 256 EGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 256 ~~~P~lIe~~t~R~~g~~~ 274 (276)
.++|++|+|+|.=..|-++
T Consensus 237 ~dkPtlI~~kTiIG~Gsp~ 255 (663)
T COG0021 237 TDKPTLIIVKTIIGKGSPN 255 (663)
T ss_pred CCCCeEEEEEeeeecCCCC
Confidence 6799999999987766543
No 37
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=9.3e-24 Score=200.99 Aligned_cols=218 Identities=20% Similarity=0.205 Sum_probs=175.5
Q ss_pred HHHHHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhccC--C-------CcEEEccCCcH------HHHHHcCCCHH
Q 023827 44 DMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--N-------DDFVVPQYREP------GVLLWRGFSMQ 108 (276)
Q Consensus 44 ~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~--~-------~D~~~~~yR~~------~~~~~~G~~~~ 108 (276)
.|-.+|..+-.+......|+.++..+.. +...+..-..|+ + .|-++.+ .|| +++...|++..
T Consensus 13 ~~n~lri~si~~~~~a~sghp~s~~s~A--~~~~vlf~~~mr~~~~~p~~~n~Drfvls-~GHa~~llYa~~~l~G~~~~ 89 (632)
T KOG0523|consen 13 AVNNLRILSIDATSAAKSGHPGSPLSLA--PIMHVLFFEVMRYNPADPYWFNRDRFVLS-NGHACPLLYAHWHLAGYDRE 89 (632)
T ss_pred HhhhhhhhhHHHHHhhhcCCCCCccccc--hhhhhhhhhheecccCCcCCCCCceEEEe-ccccchHHHHHHHHhccCcH
Confidence 4666788877777777777765433322 333333333343 1 3655554 444 45566798889
Q ss_pred HHHHHhhcCCCCCCCCCCCccccCCCCCCccccccccccccchhhhHHHHhhhcCC-CceEEEEECCCcCCcchHHHHHH
Q 023827 109 EFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK-DACAVTYFGDGGTSEGDFHAALN 187 (276)
Q Consensus 109 ~~l~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~A~G~A~a~k~~~~-~~~vv~~~GDG~~~~G~~~Eal~ 187 (276)
+.|.+|+.. ++..+.|+....+++...+|++|++++.|+|+|++.|+.+. +.+|+|++|||++++|..|||++
T Consensus 90 edl~~~Rq~------~s~t~ghp~~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s 163 (632)
T KOG0523|consen 90 EDLKNFRQI------GSDTPGHPEPELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMS 163 (632)
T ss_pred HHHHHHHhh------CCCCCCCCcccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHh
Confidence 999999975 77889999877777778899999999999999999999877 89999999999999999999999
Q ss_pred HHHHCCC-CEEEEEEeCCccccccccCccCCcchhh-hHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEE
Q 023827 188 FSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVV-KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVK 265 (276)
Q Consensus 188 ~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~-~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~ 265 (276)
+|+.|+| ++|+|.+||+.++++++...+. .++.+ ++++|||++..||++|++++.+++.+|.. ..++|++|-++
T Consensus 164 ~Ag~l~ldnLVai~D~n~is~~g~t~~~~~-~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~---~k~kpt~i~~~ 239 (632)
T KOG0523|consen 164 LAGHLKLDNLVAIYDNNKISIDGATSLGFD-EDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKS---VKGKPTAIKAT 239 (632)
T ss_pred hhhhcccCCEEEEEccccccCCCCCccccc-ccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhh---ccCCceeeeee
Confidence 9999999 8999999999999998877654 45555 99999999999999999999999999873 35799999999
Q ss_pred EecCCCCCC
Q 023827 266 CLSFSIFLS 274 (276)
Q Consensus 266 t~R~~g~~~ 274 (276)
|+...|...
T Consensus 240 t~~g~G~~~ 248 (632)
T KOG0523|consen 240 TFIGRGSPY 248 (632)
T ss_pred eeeecCccc
Confidence 999888653
No 38
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.92 E-value=1.3e-23 Score=208.40 Aligned_cols=228 Identities=14% Similarity=0.147 Sum_probs=160.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhccC-CCcEEEcc--CCcHHHHHHcCC
Q 023827 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQ--YREPGVLLWRGF 105 (276)
Q Consensus 29 ~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~-~~D~~~~~--yR~~~~~~~~G~ 105 (276)
|.+.++.+++.++-.. +|..--.+... ..|+++ ++.|-=-+.+++-..++ |.|.++.. |-..++++..|.
T Consensus 42 dlk~l~~~~l~~la~~---iR~~ii~~~~~-~~GH~g---~~Ls~vel~~aL~~~~~~p~Dr~i~s~GH~ay~~~~l~gr 114 (677)
T PLN02582 42 HMKNLSVKELKQLADE---LRSDVIFNVSK-TGGHLG---SSLGVVELTVALHYVFNAPQDKILWDVGHQSYPHKILTGR 114 (677)
T ss_pred HHhhCCHHHHHHHHHH---HHHHHHHHHHh-cCCCcC---ccccHHHHHHHHHHhhCCCCCeEEEECcchHHHHHHHHcc
Confidence 4556788887755444 34332222221 235543 33432222233333444 67877764 555567777787
Q ss_pred CHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccccccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHH
Q 023827 106 SMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHA 184 (276)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~-~~~~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~E 184 (276)
.+.|..++.. |+ +++|+.... ++...++|++|+++++|+|+|+|.++++.+++|+|++|||++++|.+||
T Consensus 115 --~~~l~~~r~~------g~-l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~~E 185 (677)
T PLN02582 115 --RDKMHTMRQT------NG-LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYE 185 (677)
T ss_pred --HHHhcccccC------CC-cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhHHH
Confidence 3446666643 44 888887543 6677789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCEEEEEEeCCc-cccc-----cccCc--c---------------------------C--Ccchh------
Q 023827 185 ALNFSAVTEAPVIFICRNNGW-AIST-----PISDQ--F---------------------------R--SDGAV------ 221 (276)
Q Consensus 185 al~~A~~~~Lpvi~vv~nN~~-~~~~-----~~~~~--~---------------------------~--~~~~~------ 221 (276)
|++.|+.+++|+|+||+||+. ++.+ ..... . + ..++.
T Consensus 186 aln~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (677)
T PLN02582 186 AMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDEY 265 (677)
T ss_pred HHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHHHH
Confidence 999999999999999999996 2210 00000 0 0 00111
Q ss_pred ----------hhHhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 222 ----------VKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 222 ----------~~a~a~G~~~~-~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
.++++|||.++ .|||||++++.++++++.+. ..++|++|.++|-+.+|+.+
T Consensus 266 ~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~--~~~~P~vihv~T~KGkG~~~ 327 (677)
T PLN02582 266 ARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKST--KTTGPVLIHVVTEKGRGYPY 327 (677)
T ss_pred hhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEecCCCCCCh
Confidence 24889999977 99999999999999988753 11589999999999999875
No 39
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.88 E-value=2.9e-22 Score=188.64 Aligned_cols=244 Identities=16% Similarity=0.133 Sum_probs=194.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhcc------CCCcEEEcc-CCcHHHHH
Q 023827 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAI------KNDDFVVPQ-YREPGVLL 101 (276)
Q Consensus 29 ~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al------~~~D~~~~~-yR~~~~~~ 101 (276)
+...+.+++++++-+.|+.+..||+++..++..-| .| .+.|-|.+.+-.-..| ...|++++. |||+..++
T Consensus 150 ~~e~l~keEr~~i~~Lmlksq~fD~FlatKFpTvK--RY-GgEGAESM~aFF~eLl~~sa~~~ie~viigmpHRGRlnLl 226 (913)
T KOG0451|consen 150 DQEQLGKEERCEIAELMLKSQAFDNFLATKFPTVK--RY-GGEGAESMLAFFWELLRDSAQANIEHVIIGMPHRGRLNLL 226 (913)
T ss_pred HHHHhhHHHHHHHHHHHHhhhhHHHHHHhccchhh--hh-ccccHHHHHHHHHHHHHHHHhcCcceEEEeccccCcchHH
Confidence 34578999999999999999999999999887644 12 3566676553222222 357999984 99998777
Q ss_pred H--cCCCHHHHHHHhhcCCCCCCC---CCCCccccCCC--------C--CCccccccccccccchhhhHHHHhhhc----
Q 023827 102 W--RGFSMQEFANQCFGNKADYGK---GRQMPIHYGSN--------K--HNYFTVSSTIATQLPHAVGAAYALKMD---- 162 (276)
Q Consensus 102 ~--~G~~~~~~l~~~~~~~~~~~~---G~~~~~h~~~~--------~--~~~~~~~g~lG~~l~~A~G~A~a~k~~---- 162 (276)
. ..+||..++.++.|.+.-+.. -+..-+|+.+. + ..+.++.+++-..-|+|+|.+.+.+..
T Consensus 227 t~Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhvtMlpNPSHLEAvNPVAmGKtR~rqqsr~~G 306 (913)
T KOG0451|consen 227 TALLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVTMLPNPSHLEAVNPVAMGKTRSRQQSRGEG 306 (913)
T ss_pred HHHhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcccCCceEEEecCChhhhhccCchhhcchhHHHHhhcCC
Confidence 4 689999999999987654321 11222343321 1 135677899999999999999987643
Q ss_pred ----------CCCceEEEEECCCcC-CcchHHHHHHHHHH--CCC-CEEEEEEeCCccccccccCccCCcchhhhHhhcC
Q 023827 163 ----------RKDACAVTYFGDGGT-SEGDFHAALNFSAV--TEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (276)
Q Consensus 163 ----------~~~~~vv~~~GDG~~-~~G~~~Eal~~A~~--~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (276)
+.....+.+.||++| .+|.+||+++++-. +++ ..+++|.||+.+.++|.+...+....++++++++
T Consensus 307 dyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rGRSs~ycsDiaK~~~ 386 (913)
T KOG0451|consen 307 DYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRGRSSAYCSDIAKSIQ 386 (913)
T ss_pred CCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCcccccccchhhhHHHHHhC
Confidence 112356778999999 79999999998765 456 6799999999999999988888888999999999
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCC
Q 023827 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLSV 275 (276)
Q Consensus 229 ~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~~ 275 (276)
++++.|+|+|++++.+|.+-|.++.|+.++.++|++.|||.+|||++
T Consensus 387 ~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnel 433 (913)
T KOG0451|consen 387 APVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNEL 433 (913)
T ss_pred CCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999875
No 40
>PRK05261 putative phosphoketolase; Provisional
Probab=99.86 E-value=7.4e-21 Score=189.75 Aligned_cols=201 Identities=20% Similarity=0.238 Sum_probs=157.9
Q ss_pred ccccccCChhHHHHHHHHhccCCC--cEEEccCCcHHH------HHHcC-----C---CHHHH-HHHhhcCCCCCCCCCC
Q 023827 64 ISFYLTTSGEEAINIASAAAIKND--DFVVPQYREPGV------LLWRG-----F---SMQEF-ANQCFGNKADYGKGRQ 126 (276)
Q Consensus 64 ~~~~~~~~G~Ea~~~~~~~al~~~--D~~~~~yR~~~~------~~~~G-----~---~~~~~-l~~~~~~~~~~~~G~~ 126 (276)
++.|-++.|+..+.+++...++.. |.++..--||+. +...| + +.++. |..++.+- +.-.+
T Consensus 49 ~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqf---s~pgg 125 (785)
T PRK05261 49 LGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQF---SFPGG 125 (785)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhc---cCCCC
Confidence 467888999999999998888865 655655456632 23356 3 22231 44333221 11236
Q ss_pred CccccCCCCCCccccccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchH---HHHHHHHHHCCC-CEEEEEEe
Q 023827 127 MPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF---HAALNFSAVTEA-PVIFICRN 202 (276)
Q Consensus 127 ~~~h~~~~~~~~~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~---~Eal~~A~~~~L-pvi~vv~n 202 (276)
+++|+....+|+...+|++|+++++|+|+|+.. ++.+|+|++|||++++|.+ |++.+++..+++ +++.|+++
T Consensus 126 ~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~~----~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~ 201 (785)
T PRK05261 126 IPSHAAPETPGSIHEGGELGYSLSHAYGAAFDN----PDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHL 201 (785)
T ss_pred cCCCCCCCCCCeeeCCCchhhHHHHHHHHHHcC----CCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEe
Confidence 899998777899999999999999999999765 4889999999999999984 888888888888 89999999
Q ss_pred CCccccccccCc-cCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHH-----------HhHcc---CCCE--EEEEE
Q 023827 203 NGWAISTPISDQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAARE-----------MAIGE---GRPI--LIEVK 265 (276)
Q Consensus 203 N~~~~~~~~~~~-~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~-----------~~r~~---~~P~--lIe~~ 265 (276)
|+|++++++... .+..++.+++++|||+++.|||+|+.++++++++|++ .||.+ .+|+ +|.++
T Consensus 202 Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~r 281 (785)
T PRK05261 202 NGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLR 281 (785)
T ss_pred cCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEE
Confidence 999999999865 4557899999999999999999999999988766654 44445 5899 99999
Q ss_pred EecCCC
Q 023827 266 CLSFSI 271 (276)
Q Consensus 266 t~R~~g 271 (276)
|.+.+|
T Consensus 282 T~kG~g 287 (785)
T PRK05261 282 TPKGWT 287 (785)
T ss_pred CCccCC
Confidence 999666
No 41
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=99.85 E-value=5.5e-20 Score=182.95 Aligned_cols=261 Identities=14% Similarity=0.124 Sum_probs=204.1
Q ss_pred CCCeeEeeCCCCC-C----CCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhcc-
Q 023827 11 RIPCYRVLDDDGQ-P----FPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAI- 84 (276)
Q Consensus 11 ~~~~~~~~~~~g~-~----~~~~~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al- 84 (276)
.+++.+|.|.+.+ + ++. ..+.++.|+.+.+|+++..+-.||+++..+|.--| +| +..|-|+....+-..+
T Consensus 146 g~E~~hi~~~~~~~Wl~~riE~-~~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~K-RF--slEG~eslip~l~~~i~ 221 (906)
T COG0567 146 GVEYMHISDPEEKRWLQERIES-GKPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAK-RF--SLEGGESLIPMLDELID 221 (906)
T ss_pred eeeeeccCCHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCc-cc--cccchhhHHHHHHHHHH
Confidence 3455555555322 2 222 35789999999999999999999999988774322 34 4588888776554444
Q ss_pred -----CCCcEEEcc-CCcHHHHH--HcCCCHHHHHHHhhcCCCCCCCCCCCccccCCC-----C-----CCccccccccc
Q 023827 85 -----KNDDFVVPQ-YREPGVLL--WRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN-----K-----HNYFTVSSTIA 146 (276)
Q Consensus 85 -----~~~D~~~~~-yR~~~~~~--~~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~-----~-----~~~~~~~g~lG 146 (276)
...++++++ |||+-..| ..|.|++.++.||.|+..-...-+....|.+.. . ....+++++|-
T Consensus 222 ~~~~~G~~~vviGMaHRGRLNvL~nvlgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~~~~~~~~v~l~La~NPSHLE 301 (906)
T COG0567 222 RAGKQGVKEVVIGMAHRGRLNVLVNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDRQTDGGKVHLSLAFNPSHLE 301 (906)
T ss_pred HHHhcCcceEEecccccchHHHHHHHhCCCHHHHHHHhCCCCCCCCcccccccccccccccccCCCeeEEEecCCcchhh
Confidence 356999995 99997766 479999999999998653221112234444321 0 12456689999
Q ss_pred cccchhhhHHHHhhhcCC-----CceEEEEECCCcC-CcchHHHHHHHHHH--CCC-CEEEEEEeCCccccccccCccCC
Q 023827 147 TQLPHAVGAAYALKMDRK-----DACAVTYFGDGGT-SEGDFHAALNFSAV--TEA-PVIFICRNNGWAISTPISDQFRS 217 (276)
Q Consensus 147 ~~l~~A~G~A~a~k~~~~-----~~~vv~~~GDG~~-~~G~~~Eal~~A~~--~~L-pvi~vv~nN~~~~~~~~~~~~~~ 217 (276)
.-.|+..|.+.|.+-... ....+.++||.+| .+|.+.|.+|+... |.. +.++||.||+.+.+|...+..+.
T Consensus 302 ~v~PVV~G~vRa~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt 381 (906)
T COG0567 302 IVNPVVEGSVRAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARST 381 (906)
T ss_pred hhchhhhcchHhhhhhhccCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCCcccccCC
Confidence 999999999999875422 2456799999999 79999999999877 455 89999999999998886666777
Q ss_pred cchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCC
Q 023827 218 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLSV 275 (276)
Q Consensus 218 ~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~~ 275 (276)
+...+.|+.+++|+++|+|+||+++..+.+.|++++.+.+++++|++.|||..|||+.
T Consensus 382 ~Y~TDvAKm~~aPifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~ 439 (906)
T COG0567 382 PYCTDVAKMIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEG 439 (906)
T ss_pred CCCCChhhccCCceeecccCCchhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCcc
Confidence 7888999999999999999999999999999999999999999999999999999985
No 42
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.83 E-value=1.4e-20 Score=161.75 Aligned_cols=123 Identities=22% Similarity=0.265 Sum_probs=98.5
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeC-Ccccccc-----cc--
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP-----IS-- 212 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~-----~~-- 212 (276)
..++||+++|.|+|+++|.+ +++|||++|||+|++. ..| |.+|+++++|+++||.|| +|++... ..
T Consensus 51 ~~g~mG~~lpaaiGa~la~p----~r~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~ 124 (196)
T cd02013 51 SFGNCGYALPAIIGAKAAAP----DRPVVAIAGDGAWGMS-MME-IMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNR 124 (196)
T ss_pred CCcccccHHHHHHHHHHhCC----CCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCC
Confidence 35899999999999999865 8899999999999985 455 999999999998887555 5654321 00
Q ss_pred ---CccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 023827 213 ---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIF 272 (276)
Q Consensus 213 ---~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~ 272 (276)
.....+|++++|++||+++.+|+ +++++.+++++|++.+|. ++|+|||+++++..+.
T Consensus 125 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~~p~liev~v~~~~~~ 184 (196)
T cd02013 125 FVGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMAE-GKTTVIEIVCDQELGD 184 (196)
T ss_pred cccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhcCCC-CCeEEEEEEeCcccCC
Confidence 11235799999999999999997 688999999999865443 6899999999876653
No 43
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.83 E-value=3.6e-20 Score=155.74 Aligned_cols=114 Identities=24% Similarity=0.276 Sum_probs=93.0
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeC-CccccccccC------
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD------ 213 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~~------ 213 (276)
..|+||+++|.|+|++++.+ +++|+|++|||+|++. .++|.+|++++||+++||.|| +|++......
T Consensus 46 ~~g~mG~~lp~AiGa~la~~----~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~ 119 (172)
T cd02004 46 TFGTLGVGLGYAIAAALARP----DKRVVLVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLG 119 (172)
T ss_pred CCCcccchHHHHHHHHHhCC----CCeEEEEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCC
Confidence 35889999999999999875 8899999999999975 366999999999987777665 5776432211
Q ss_pred -----ccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 214 -----QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 214 -----~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
....+|+++++++||+++.+|+ +++++.++++++.+ .++|++||+++
T Consensus 120 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i 171 (172)
T cd02004 120 LPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRALA----SGKPALINVII 171 (172)
T ss_pred CceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHH----cCCCEEEEEEc
Confidence 1245789999999999999998 58888888888775 47999999986
No 44
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.82 E-value=5e-20 Score=153.33 Aligned_cols=116 Identities=30% Similarity=0.353 Sum_probs=95.6
Q ss_pred cccccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCcccccccc------
Q 023827 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS------ 212 (276)
Q Consensus 139 ~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~------ 212 (276)
....++||+++|.|+|++++.+ +++|+|++|||++++ .++++++|.++++|+++||.||++...+...
T Consensus 42 ~~~~g~~G~~~~~a~Gaa~a~~----~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~ 115 (168)
T cd00568 42 STGFGAMGYGLPAAIGAALAAP----DRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYG 115 (168)
T ss_pred CCCchhhhhhHHHHHHHHHhCC----CCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcC
Confidence 3457899999999999999976 789999999999998 4578999999999999999988865432211
Q ss_pred -----CccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 213 -----DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 213 -----~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
...+..++.+++++||+++.+|++ ++++.++++++.+ .++|++||++|
T Consensus 116 ~~~~~~~~~~~d~~~~a~~~G~~~~~v~~--~~~l~~a~~~a~~----~~~p~~i~v~~ 168 (168)
T cd00568 116 GRVSGTDLSNPDFAALAEAYGAKGVRVED--PEDLEAALAEALA----AGGPALIEVKT 168 (168)
T ss_pred CCcccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 233457899999999999999974 7788888777764 68999999976
No 45
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.82 E-value=5e-20 Score=158.95 Aligned_cols=123 Identities=20% Similarity=0.192 Sum_probs=98.5
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccccc--------
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-------- 211 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~-------- 211 (276)
..|+||+++|.|+|+++|.+ +++|||++|||+|++.. . +|.||+++++|+++||.||+ |++....
T Consensus 55 ~~GsmG~~lpaaiGa~la~p----~~~vv~i~GDG~f~m~~-~-eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~ 128 (202)
T cd02006 55 QAGPLGWTVPAALGVAAADP----DRQVVALSGDYDFQFMI-E-ELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDY 128 (202)
T ss_pred CccchhhhhHHHHhHHhhCC----CCeEEEEEeChHhhccH-H-HHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCcc
Confidence 35899999999999999975 88999999999999853 4 49999999999988888776 5532100
Q ss_pred ------cC------ccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 212 ------SD------QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 212 ------~~------~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
.. ....+|++++|++||+++.+|+ +++++.+++++|++.+++.++|+|||+++.+...
T Consensus 129 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i~~~~~ 198 (202)
T cd02006 129 QVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAILERVTN 198 (202)
T ss_pred ccccccccccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEeccccc
Confidence 00 0024789999999999999997 6889999999988654445799999999987654
No 46
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.81 E-value=8.2e-19 Score=168.80 Aligned_cols=242 Identities=14% Similarity=0.145 Sum_probs=194.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhccC------CCcEEEcc-CCcHHHHHH
Q 023827 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK------NDDFVVPQ-YREPGVLLW 102 (276)
Q Consensus 30 ~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~------~~D~~~~~-yR~~~~~~~ 102 (276)
...++.|+..-+|.++.++-.||+++.+++..-| +| ...|.|.+..++-..++ .+++++++ |||+-..++
T Consensus 243 ~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seK-RF--GLEGcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRLNvL~ 319 (1017)
T KOG0450|consen 243 PMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEK-RF--GLEGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVLA 319 (1017)
T ss_pred ccccCHHHHHHHHHHHHHhhHHHHHHhhhCCccc-cc--cccchhhhhhHHHHHhhhhhhcCchheEecCCccchhHHHH
Confidence 3578999999999999999999999999887644 33 35888998877765544 56888885 999987775
Q ss_pred c--CCCHHHHHHHhhcCCCCCCCCCC-CccccCCC----C--------CCccccccccccccchhhhHHHHhhhc-----
Q 023827 103 R--GFSMQEFANQCFGNKADYGKGRQ-MPIHYGSN----K--------HNYFTVSSTIATQLPHAVGAAYALKMD----- 162 (276)
Q Consensus 103 ~--G~~~~~~l~~~~~~~~~~~~G~~-~~~h~~~~----~--------~~~~~~~g~lG~~l~~A~G~A~a~k~~----- 162 (276)
. -.|+++++.+|.|.+..- .|++ ...|.+.. . ..+..+.+++-+.=|+.+|-..|.++-
T Consensus 320 NVvRKpl~qIfseF~g~~~~D-eGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~GKtrA~q~y~~D~~ 398 (1017)
T KOG0450|consen 320 NVVRKPLEQIFSEFSGLEAAD-EGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTGDEE 398 (1017)
T ss_pred HHHhhHHHHHHHhccCCCCCc-CCCCceeeeeccccccccccCCceeEEEEecCchhhcccCceeechHHHHHHhccccc
Confidence 4 478999999999854322 2333 45555431 1 135667899999999999999998753
Q ss_pred CCCceEEEEECCCcC-CcchHHHHHHHHHHCC--C-CEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCC
Q 023827 163 RKDACAVTYFGDGGT-SEGDFHAALNFSAVTE--A-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGND 238 (276)
Q Consensus 163 ~~~~~vv~~~GDG~~-~~G~~~Eal~~A~~~~--L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d 238 (276)
+.+...+.+.||++| .+|.++|.+.+...-+ . ..|+||.||+.+.+|...-..+.+...+.|++.+.|.++|+++|
T Consensus 399 ~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar~v~aPIFHVNaDD 478 (1017)
T KOG0450|consen 399 GKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVARVVNAPIFHVNADD 478 (1017)
T ss_pred cceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcccccCCCCchhHHHHhCCCeEeecCCC
Confidence 344678999999999 7999999776544322 2 47999999999998776666667788899999999999999999
Q ss_pred HHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCC
Q 023827 239 ALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLSV 275 (276)
Q Consensus 239 ~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~~ 275 (276)
+++|--+++-|.++....++.++|+++|||.+|||+.
T Consensus 479 ~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~ 515 (1017)
T KOG0450|consen 479 PEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEI 515 (1017)
T ss_pred hHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcc
Confidence 9999999999999988999999999999999999985
No 47
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.80 E-value=2.4e-19 Score=151.27 Aligned_cols=112 Identities=30% Similarity=0.288 Sum_probs=93.0
Q ss_pred cccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-cccccccc---------
Q 023827 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS--------- 212 (276)
Q Consensus 143 g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~--------- 212 (276)
|+||+++|.|+|+++|.+ +++|+|++|||+|+++. ++|.+|.++++|+++||.||+ |++.....
T Consensus 49 g~mG~~lp~aiGaala~~----~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~ 122 (178)
T cd02002 49 GGLGWGLPAAVGAALANP----DRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPG 122 (178)
T ss_pred ccccchHHHHHHHHhcCC----CCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCcc
Confidence 899999999999999875 78999999999999874 469999999999999988886 77542110
Q ss_pred --------CccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 213 --------DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 213 --------~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
...+..|+++++++||+++.+|++ ++++.+++++|.+ .++|++||+++
T Consensus 123 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~----~~~p~vi~v~v 178 (178)
T cd02002 123 ENAPDGLDLLDPGIDFAAIAKAFGVEAERVET--PEELDEALREALA----EGGPALIEVVV 178 (178)
T ss_pred cccccccccCCCCCCHHHHHHHcCCceEEeCC--HHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 112347899999999999999985 8899888888875 57999999974
No 48
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.80 E-value=3.3e-19 Score=150.82 Aligned_cols=118 Identities=25% Similarity=0.332 Sum_probs=95.4
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc--------c-
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST--------P- 210 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~--------~- 210 (276)
..|+||+++|.|+|+++|.+ +++|+|++|||+|+++ +.| |.++.++++|+++||.||+ |++.. +
T Consensus 49 ~~g~mG~~~~~aiGa~~a~~----~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~ 122 (178)
T cd02014 49 LLATMGNGLPGAIAAKLAYP----DRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPE 122 (178)
T ss_pred CCchhhhHHHHHHHHHHhCC----CCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCc
Confidence 35899999999999999864 7899999999999987 566 8999999999988888885 66521 1
Q ss_pred ccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 211 ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 211 ~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
........|+.+++++||+++.+++ +++++.++++++++ .++|+|||+++.+..
T Consensus 123 ~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~a~~----~~~p~liev~~~~~~ 176 (178)
T cd02014 123 FGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEALA----ADGPVVIDVVTDPNE 176 (178)
T ss_pred eeccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCCCC
Confidence 1111235689999999999999997 67788888887765 579999999997654
No 49
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.79 E-value=6.4e-19 Score=150.04 Aligned_cols=118 Identities=25% Similarity=0.308 Sum_probs=93.7
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCc-ccccc---------c
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AISTP---------I 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~-~~~~~---------~ 211 (276)
.|+||+++|.|+|+++|.+ +++|+|++|||+|++. +.| |.+|+++++|+++||.||+. ++... .
T Consensus 49 ~g~mG~~lp~aiGa~la~~----~~~vv~i~GDG~f~~~-~~e-L~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~ 122 (186)
T cd02015 49 LGTMGFGLPAAIGAKVARP----DKTVICIDGDGSFQMN-IQE-LATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRY 122 (186)
T ss_pred ccchhchHHHHHHHHHhCC----CCeEEEEEcccHHhcc-HHH-HHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCce
Confidence 5899999999999999865 7899999999999874 444 99999999999888877764 43110 0
Q ss_pred --cCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 212 --SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 212 --~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
....+..|+++++++||+++.+|++ .+++.+++++|.+ .++|+|||+++.+...
T Consensus 123 ~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~----~~~p~liev~~~~~~~ 178 (186)
T cd02015 123 SHTTLDSNPDFVKLAEAYGIKGLRVEK--PEELEAALKEALA----SDGPVLLDVLVDPEEN 178 (186)
T ss_pred eeccCCCCCCHHHHHHHCCCceEEeCC--HHHHHHHHHHHHh----CCCCEEEEEEeCCCcc
Confidence 0112357899999999999999984 6788788877764 5799999999987553
No 50
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.79 E-value=5e-19 Score=153.08 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=94.5
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeC-Ccccccc------cc-
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP------IS- 212 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~------~~- 212 (276)
..|+||+++|.|+|+++|.+ +++|||++|||+|+++. . +|.+|+++++|+++||.|| +|++... ..
T Consensus 46 ~~gsmG~~lpaAiGa~la~p----~~~vv~i~GDGsf~m~~-~-eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~ 119 (205)
T cd02003 46 GYSCMGYEIAAGLGAKLAKP----DREVYVLVGDGSYLMLH-S-EIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSGS 119 (205)
T ss_pred CcchhhhHHHHHHHHHHhCC----CCeEEEEEccchhhccH-H-HHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCcc
Confidence 35899999999999999865 78999999999999853 3 5999999999987666655 4654210 00
Q ss_pred ----------------CccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 213 ----------------DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 213 ----------------~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
......|+.++|++||+++.+|+ +++++.+++++|++ .++|+|||+++.+...
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~v~~~~~ 188 (205)
T cd02003 120 FGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAKA----SDRTTVIVIKTDPKSM 188 (205)
T ss_pred ccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeecccc
Confidence 00124799999999999999995 78999999998875 4799999999987654
No 51
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.79 E-value=5.8e-19 Score=149.34 Aligned_cols=117 Identities=19% Similarity=0.263 Sum_probs=94.5
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-cccccc---------
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP--------- 210 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~--------- 210 (276)
..|+||+++|.|+|+++|.+ +++|||++|||+|++.. .+|.+|+++++|+++||.||+ |++...
T Consensus 46 ~~g~mG~~lp~aiGa~la~~----~~~vv~i~GDG~f~m~~--~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~ 119 (177)
T cd02010 46 GLATMGVALPGAIGAKLVYP----DRKVVAVSGDGGFMMNS--QELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRD 119 (177)
T ss_pred CChhhhhHHHHHHHHHHhCC----CCcEEEEEcchHHHhHH--HHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCc
Confidence 45899999999999999865 88999999999998753 449999999999888876664 664211
Q ss_pred ccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 023827 211 ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSF 269 (276)
Q Consensus 211 ~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 269 (276)
........|+++++++||+++.+|+ +++++.++++++++ .++|+|||+.+.+.
T Consensus 120 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~ 172 (177)
T cd02010 120 SGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERALA----ADGVHVIDCPVDYS 172 (177)
T ss_pred ccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeccc
Confidence 1111235689999999999999997 78899999998876 47999999999763
No 52
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.79 E-value=1e-18 Score=149.22 Aligned_cols=119 Identities=23% Similarity=0.152 Sum_probs=95.3
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCC-CEEEEEEeCC-ccccccccCccCCc
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNG-WAISTPISDQFRSD 218 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~-~~~~~~~~~~~~~~ 218 (276)
++|+||+++|.|+|+++|.+ +++|+|++|||+|++. .++|.+++++++ |+++||.||+ |++...........
T Consensus 46 ~~g~mG~~lpaAiGaala~p----~~~Vv~i~GDG~f~m~--~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~ 119 (188)
T cd03371 46 TVGSMGHASQIALGIALARP----DRKVVCIDGDGAALMH--MGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDV 119 (188)
T ss_pred ecCccccHHHHHHHHHHhCC----CCcEEEEeCCcHHHhh--ccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCC
Confidence 34999999999999999975 7899999999999864 255999999997 7777776665 55532222222347
Q ss_pred chhhhHhhcCceE-EEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 219 GAVVKGRAYGVRS-IRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 219 ~~~~~a~a~G~~~-~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
|+++++++||++. .+|+ ++.++.++++++++ .++|++||+++.+..+
T Consensus 120 d~~~~A~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~~~~~~~ 167 (188)
T cd03371 120 SLPAIAKACGYRAVYEVP--SLEELVAALAKALA----ADGPAFIEVKVRPGSR 167 (188)
T ss_pred CHHHHHHHcCCceEEecC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCCC
Confidence 9999999999997 5786 78899999988875 4789999999988775
No 53
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.78 E-value=2.8e-18 Score=145.22 Aligned_cols=117 Identities=21% Similarity=0.148 Sum_probs=92.4
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-cccccccc-------
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS------- 212 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~------- 212 (276)
..|+||+++|.|+|+++|.+ +++|++++|||+|++.. +++|.+|+++++|+++||.||+ |++.....
T Consensus 49 ~~g~mG~gl~~AiGa~la~p----~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~ 123 (178)
T cd02008 49 TCTCMGASIGVAIGMAKASE----DKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKT 123 (178)
T ss_pred ccccCccHHHHHhhHHhhCC----CCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCccc
Confidence 47899999999999999976 78999999999997632 4669999999999877776665 54322111
Q ss_pred --CccCCcchhhhHhhcCceEEEE-cCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 213 --DQFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~v-dg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
......|+.+++++||+++++| +.+|.+++.+++++|++ .++|++|+++.
T Consensus 124 ~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~----~~gp~lI~v~~ 176 (178)
T cd02008 124 LTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALA----VPGVSVIIAKR 176 (178)
T ss_pred ccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 1112478999999999999999 66777777788888875 47999999864
No 54
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.78 E-value=1.2e-18 Score=144.64 Aligned_cols=114 Identities=12% Similarity=0.059 Sum_probs=92.2
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCC-CCEEEEEEeC-CccccccccCccCCcc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE-APVIFICRNN-GWAISTPISDQFRSDG 219 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~-Lpvi~vv~nN-~~~~~~~~~~~~~~~~ 219 (276)
.|+||+++|.|+|+++|.+ ++|||++|||+|++.. .+|.++++++ +|+++||.|| +|++..........+|
T Consensus 41 ~gsmG~~lp~AiGa~~a~~-----~~Vv~i~GDG~f~m~~--~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~~~~~~~d 113 (157)
T cd02001 41 LGSMGLAGSIGLGLALGLS-----RKVIVVDGDGSLLMNP--GVLLTAGEFTPLNLILVVLDNRAYGSTGGQPTPSSNVN 113 (157)
T ss_pred ecchhhHHHHHHHHHhcCC-----CcEEEEECchHHHhcc--cHHHHHHHhcCCCEEEEEEeCccccccCCcCCCCCCCC
Confidence 7999999999999999853 7899999999997642 3389999994 9998888655 4665432222223579
Q ss_pred hhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 023827 220 AVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLS 268 (276)
Q Consensus 220 ~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 268 (276)
++++|++||+++.+|+ +++++.++++++++ .++|++||+++.+
T Consensus 114 ~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~vi~v~i~~ 156 (157)
T cd02001 114 LEAWAAACGYLVLSAP--LLGGLGSEFAGLLA----TTGPTLLHAPIAP 156 (157)
T ss_pred HHHHHHHCCCceEEcC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 9999999999999885 78999999999886 4799999999854
No 55
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=99.77 E-value=1.2e-18 Score=153.40 Aligned_cols=218 Identities=18% Similarity=0.206 Sum_probs=140.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhccC-CCcEEEc--cCCcHHHHHHcCC
Q 023827 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLWRGF 105 (276)
Q Consensus 29 ~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~-~~D~~~~--~yR~~~~~~~~G~ 105 (276)
|...++.++|.++-..+ |.+ .+....+.| +...++.|-=-..+|+-..++ |.|-++. .|...++=+..|+
T Consensus 9 dlk~ls~~eL~~La~ei---R~~--ii~~vs~~G--GHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLTGR 81 (270)
T PF13292_consen 9 DLKKLSIEELEQLAQEI---REF--IIETVSKTG--GHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILTGR 81 (270)
T ss_dssp HHTTS-GGGHHHHHHHH---HHH--HHHHCTCCC--STHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCTTT
T ss_pred HHHcCCHHHHHHHHHHH---HHH--HHHHHhhcC--CCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhccCc
Confidence 45678888888776554 433 222222222 344556665445566766776 6787766 5888888888886
Q ss_pred CHHHHHHHhhcCCCCCCCCCCCccccCCCCCCc-cccccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHH
Q 023827 106 SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNY-FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHA 184 (276)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~~~~-~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~E 184 (276)
. +.|..++.. .++++.+...+... ...+|+-+.++++|.|+|.|..+.+++..||+++|||++.-|..+|
T Consensus 82 ~--~~f~TlRq~-------gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~E 152 (270)
T PF13292_consen 82 R--DRFHTLRQY-------GGLSGFPKRSESEYDAFGAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMAFE 152 (270)
T ss_dssp C--CCGGGTTST-------TS--SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHHHH
T ss_pred H--HHhchhhhc-------CCcCCCCCcccCCCCcccCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHHHH
Confidence 4 446666643 34555554333222 2457999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCEEEEEEeCCccccccccC-------c--------c--------C------------Ccc----hhhhHh
Q 023827 185 ALNFSAVTEAPVIFICRNNGWAISTPISD-------Q--------F--------R------------SDG----AVVKGR 225 (276)
Q Consensus 185 al~~A~~~~Lpvi~vv~nN~~~~~~~~~~-------~--------~--------~------------~~~----~~~~a~ 225 (276)
|||-|...+-++|+|++||+.+|+.++.. . . . ... ...+++
T Consensus 153 ALN~~g~~~~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s~K~~~~~lFe 232 (270)
T PF13292_consen 153 ALNNAGHLKSNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKESLKGFSPNLFE 232 (270)
T ss_dssp HHHHHHHHT-SEEEEEEE-SBSSSB--SSHCCC-------------------------------------------CCCH
T ss_pred HHHHHHhcCCCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHHHH
Confidence 99999999999999999999887532210 0 0 0 000 113567
Q ss_pred hcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 226 AYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 226 a~G~~~~-~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
.+|+.++ .+||||.+++.++++++.+ -++|+||.++|
T Consensus 233 ~LG~~Y~GPiDGHdl~~Li~~l~~~K~----~~gPvllHV~T 270 (270)
T PF13292_consen 233 ELGFDYIGPIDGHDLEELIEVLENAKD----IDGPVLLHVIT 270 (270)
T ss_dssp HCT-EEEEEEETT-HHHHHHHHHHHCC----SSSEEEEEEE-
T ss_pred HcCCeEEeccCCCCHHHHHHHHHHHhc----CCCCEEEEEeC
Confidence 7899988 8999999999998887765 58999999987
No 56
>PRK06163 hypothetical protein; Provisional
Probab=99.77 E-value=2.1e-18 Score=148.75 Aligned_cols=117 Identities=21% Similarity=0.202 Sum_probs=93.9
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHC-CCCEEEEEEeC-CccccccccC-ccCCc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-EAPVIFICRNN-GWAISTPISD-QFRSD 218 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~-~Lpvi~vv~nN-~~~~~~~~~~-~~~~~ 218 (276)
.|+||+++|.|+|+++|.+ +++|||++|||+|++. . .+|.+|+++ ++|+++||.|| +|++...... ....+
T Consensus 56 ~GsMG~glpaAiGaalA~p----~r~Vv~i~GDG~f~m~-~-~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~~ 129 (202)
T PRK06163 56 LGSMGLAFPIALGVALAQP----KRRVIALEGDGSLLMQ-L-GALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQTV 129 (202)
T ss_pred ecccccHHHHHHHHHHhCC----CCeEEEEEcchHHHHH-H-HHHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCCC
Confidence 6899999999999999965 7899999999999874 2 459999887 67988888777 5775322111 12347
Q ss_pred chhhhHhhcCce-EEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 219 GAVVKGRAYGVR-SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 219 ~~~~~a~a~G~~-~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
|++++|++||++ +++|+ +.+++..+++++++ .++|+|||+++.+..
T Consensus 130 Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~~~ 176 (202)
T PRK06163 130 DVVAIARGAGLENSHWAA--DEAHFEALVDQALS----GPGPSFIAVRIDDKP 176 (202)
T ss_pred CHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCC
Confidence 899999999998 67786 78899999998875 479999999998654
No 57
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.77 E-value=2.2e-18 Score=146.11 Aligned_cols=116 Identities=18% Similarity=0.166 Sum_probs=93.5
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCC-CEEEE-EEeCCccccccccCcc-CCc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFI-CRNNGWAISTPISDQF-RSD 218 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~v-v~nN~~~~~~~~~~~~-~~~ 218 (276)
.|+||+++|.|+|+++|.+ ++|+|++|||+|+++. .++.++.++++ |+++| ++||+|++........ ...
T Consensus 41 ~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~m~~--~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~ 113 (179)
T cd03372 41 LGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLLMNL--GALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKKT 113 (179)
T ss_pred ccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHHhCH--HHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCCC
Confidence 7999999999999999964 7899999999997643 45899999996 77665 5666777654332222 257
Q ss_pred chhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 219 GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 219 ~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
|+++++++||+++.+|++ +++++.++++++. ++|++||++|.+..+
T Consensus 114 d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~------~gp~lIev~~~~~~~ 159 (179)
T cd03372 114 DLEAVAKACGLDNVATVA-SEEAFEKAVEQAL------DGPSFIHVKIKPGNT 159 (179)
T ss_pred CHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc------CCCEEEEEEEcCCCC
Confidence 899999999999999987 7888888887765 589999999987766
No 58
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.76 E-value=3.3e-18 Score=145.29 Aligned_cols=115 Identities=21% Similarity=0.248 Sum_probs=92.1
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCC-CEEEEEEeCC-ccccccccCcc-CCc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNG-WAISTPISDQF-RSD 218 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~-~~~~~~~~~~~-~~~ 218 (276)
.|+||+++|.|+|+++|. +++|+|++|||+|+++. ++|.+|+++++ |+++||.||+ |++........ ..+
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m~~--~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~ 113 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLMNL--GVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRT 113 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHhhh--hHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCC
Confidence 799999999999999985 67899999999998764 45999999995 9988887776 66543211111 357
Q ss_pred chhhhHhhcCceEEE-EcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 219 GAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 219 ~~~~~a~a~G~~~~~-vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
|+++++++||+++.+ |+ +++++.++++ +++ .++|+|||+.+.+..
T Consensus 114 d~~~lA~a~G~~~~~~v~--~~~~l~~al~-a~~----~~~p~li~v~~~~~~ 159 (181)
T TIGR03846 114 DLELVAKAAGIRNVEKVA--DEEELRDALK-ALA----MKGPTFIHVKVKPGN 159 (181)
T ss_pred CHHHHHHHCCCCeEEEeC--CHHHHHHHHH-HHc----CCCCEEEEEEeCCCC
Confidence 899999999999988 64 7888888885 553 579999999997654
No 59
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.76 E-value=8.3e-18 Score=152.17 Aligned_cols=167 Identities=18% Similarity=0.131 Sum_probs=132.4
Q ss_pred cCCcHHHHHHcCCCHH-HHHHHhhcCCC------CCCCCCCCccccCCCCCCccccccccccccchhhhHHHHhhhcCCC
Q 023827 93 QYREPGVLLWRGFSMQ-EFANQCFGNKA------DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKD 165 (276)
Q Consensus 93 ~yR~~~~~~~~G~~~~-~~l~~~~~~~~------~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~A~G~A~a~k~~~~~ 165 (276)
.||||+....+|.++. ..+.+.+++.+ |++.+....+|+.. .++.....++|.+.++|.|+++|.+..+++
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~--~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~ 91 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSP--LTVPVLHTAFAATAAVASGIEEALKARGEK 91 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCccc--ccccceeehhhChHHHHHHHHHHHHhhCCC
Confidence 4688888888898877 88888887765 66666655555443 355556789999999999999999877654
Q ss_pred -ceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccc-----------------cCccCCcchhhhHhhc
Q 023827 166 -ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI-----------------SDQFRSDGAVVKGRAY 227 (276)
Q Consensus 166 -~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~-----------------~~~~~~~~~~~~a~a~ 227 (276)
..|++++|||++..+.+ |+|+.|..+++|+++||.||.+.+.|.. .......|+.+++.++
T Consensus 92 ~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~ 170 (300)
T PRK11864 92 GVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAH 170 (300)
T ss_pred CcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHc
Confidence 45666999999987776 9999999999999999999998653211 1122346788999999
Q ss_pred CceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 228 GVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 228 G~~~~-~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
|.+.+ +++..|+.++.+++++|.+ .+||++|++.+
T Consensus 171 g~~yVA~~~~~~~~~~~~~i~~A~~----~~Gps~I~~~s 206 (300)
T PRK11864 171 KVPYVATASIAYPEDFIRKLKKAKE----IRGFKFIHLLA 206 (300)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 99665 7888899999999999987 47999999875
No 60
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.76 E-value=1.6e-17 Score=159.42 Aligned_cols=227 Identities=16% Similarity=0.157 Sum_probs=163.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhccC-CCcEEEc--cCCcHHHHHHcC
Q 023827 28 SSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLWRG 104 (276)
Q Consensus 28 ~~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~-~~D~~~~--~yR~~~~~~~~G 104 (276)
.|...+|.++|.++-..+ |.+ .+....+.| +...++.|-=-..+++-..++ |.|.++. .|....+-+..|
T Consensus 12 ~dLk~ls~~eL~~La~Ei---R~~--li~~vS~~G--GHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKiLTG 84 (627)
T COG1154 12 ADLKKLSIEELPQLADEI---REF--LLEVVSATG--GHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKILTG 84 (627)
T ss_pred HHHhhCCHHHHHHHHHHH---HHH--HHHHhccCC--CccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHHhcC
Confidence 356678888888776554 432 222222222 334456775444556666665 6786665 588888888888
Q ss_pred CCHHHHHHHhhcCCCCCCCCCCCccccCCCCC-CccccccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHH
Q 023827 105 FSMQEFANQCFGNKADYGKGRQMPIHYGSNKH-NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFH 183 (276)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~~-~~~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~ 183 (276)
+. +.|..++.+ .+++..+...+. .-+..+|+-+.+++.|+|+|.|..+++.++.|++++|||++.-|+.+
T Consensus 85 R~--e~f~tlRq~-------~GlsGf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~ 155 (627)
T COG1154 85 RR--EQFDTLRQK-------DGLSGFPKREESEHDWFGVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAF 155 (627)
T ss_pred ch--hhcchhhhc-------CCCCCCCCcccCCCcccccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchHHH
Confidence 74 667777754 345554443332 22345789999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HCCCCEEEEEEeCCccccccccCcc-----------------------C------------C-c------ch
Q 023827 184 AALNFSA-VTEAPVIFICRNNGWAISTPISDQF-----------------------R------------S-D------GA 220 (276)
Q Consensus 184 Eal~~A~-~~~Lpvi~vv~nN~~~~~~~~~~~~-----------------------~------------~-~------~~ 220 (276)
||||-|. ..+-|+|+|++||..+|+.+..... . . . ..
T Consensus 156 EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~~~ 235 (627)
T COG1154 156 EALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLLVP 235 (627)
T ss_pred HHHhhhhhccCCCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcccCc
Confidence 9999998 4456999999999998864432100 0 0 0 01
Q ss_pred hhhHhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 221 VVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 221 ~~~a~a~G~~~~-~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
..+++.+|+.++ .+||||.+++..+++.+.+ .++|+||.+.|-+.+|+.+
T Consensus 236 ~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd----~~gPvllHv~T~KGKGY~p 286 (627)
T COG1154 236 GTLFEELGFNYIGPIDGHNLEELIPTLKNAKD----LKGPVLLHVVTKKGKGYKP 286 (627)
T ss_pred hhhHHHhCCeeECCcCCCCHHHHHHHHHHHhc----CCCCEEEEEEecCCCCCCh
Confidence 126788999988 8999999999999888776 5899999999999999875
No 61
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.76 E-value=1.3e-18 Score=143.46 Aligned_cols=114 Identities=29% Similarity=0.433 Sum_probs=92.9
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc----cc----
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST----PI---- 211 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~----~~---- 211 (276)
..++||+++|.|+|+++|.+ +++|||++|||+|.+. ..| |.+|.++++|+++||.||+ |++.. +.
T Consensus 26 ~~g~mG~~~~~aiGa~~a~p----~~~vv~i~GDG~f~~~-~~e-l~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~~~~ 99 (153)
T PF02775_consen 26 GFGSMGYALPAAIGAALARP----DRPVVAITGDGSFLMS-LQE-LATAVRYGLPVVIVVLNNGGYGMTGGQQTPFGGGR 99 (153)
T ss_dssp TTT-TTTHHHHHHHHHHHST----TSEEEEEEEHHHHHHH-GGG-HHHHHHTTSSEEEEEEESSBSHHHHHHHHHTTSTC
T ss_pred CccccCCHHHhhhHHHhhcC----cceeEEecCCcceeec-cch-hHHHhhccceEEEEEEeCCcceEeccccccCcCcc
Confidence 46899999999999999854 8999999999999875 344 9999999999988888776 44311 10
Q ss_pred --cC---ccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 212 --SD---QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 212 --~~---~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
.. .....|+.+++++||+++.+|+..|++++.+++++|++ .++|+|||+
T Consensus 100 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~----~~gp~vIeV 153 (153)
T PF02775_consen 100 FSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALE----SGGPAVIEV 153 (153)
T ss_dssp HHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHH----SSSEEEEEE
T ss_pred cccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHh----CCCcEEEEc
Confidence 11 14567999999999999999998778999999999985 589999996
No 62
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.75 E-value=1e-17 Score=142.39 Aligned_cols=121 Identities=22% Similarity=0.209 Sum_probs=94.8
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEE-EeCCccccccc------cC
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPI------SD 213 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv-~nN~~~~~~~~------~~ 213 (276)
..|+||+++|.|+|+++|.+ +++|+|++|||+|++ .++| |.+|+++++|+++|| +||+|++.... ..
T Consensus 48 ~~g~mG~~l~~aiGaala~~----~~~vv~i~GDG~f~~-~~~e-l~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~ 121 (183)
T cd02005 48 LWGSIGYSVPAALGAALAAP----DRRVILLVGDGSFQM-TVQE-LSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYN 121 (183)
T ss_pred chhhHhhhHHHHHHHHHhCC----CCeEEEEECCchhhc-cHHH-HHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCcc
Confidence 45899999999999999875 789999999999977 4677 889999999765555 55567653211 11
Q ss_pred ccCCcchhhhHhhcC----ceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 023827 214 QFRSDGAVVKGRAYG----VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIF 272 (276)
Q Consensus 214 ~~~~~~~~~~a~a~G----~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~ 272 (276)
.....|+.+++++|| +++.+|+ +++++.++++++++ ..++|+|||+++.|..-.
T Consensus 122 ~~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~---~~~~p~liev~~~~~~~~ 179 (183)
T cd02005 122 DIANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALF---NRDKLSLIEVILPKDDAP 179 (183)
T ss_pred cCCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHh---cCCCcEEEEEEcCcccCC
Confidence 123478999999999 6888885 78999999988885 147999999999875543
No 63
>PRK07524 hypothetical protein; Provisional
Probab=99.75 E-value=6.8e-18 Score=165.31 Aligned_cols=118 Identities=28% Similarity=0.376 Sum_probs=98.4
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeC-Cccccc---------cc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIST---------PI 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~---------~~ 211 (276)
.|+||+++|.|+|+++|.+ +++|||++|||+|++. ++| |.+|++++||+++||.|| +|++.. +.
T Consensus 406 ~g~mG~~lp~aiGa~lA~p----~~~vv~i~GDG~f~~~-~~e-l~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~~~~~ 479 (535)
T PRK07524 406 YGTLGYGLPAAIGAALGAP----ERPVVCLVGDGGLQFT-LPE-LASAVEADLPLIVLLWNNDGYGEIRRYMVARDIEPV 479 (535)
T ss_pred cccccchHHHHHHHHHhCC----CCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECCchHHHHHHHHHhcCCcc
Confidence 5899999999999999964 8899999999999875 455 999999999998888887 576321 11
Q ss_pred cCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 212 SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 212 ~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
......+|+.++|++||+++.+|+ +++++.++++++++ .++|+|||++++|+.+
T Consensus 480 ~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~~~ 533 (535)
T PRK07524 480 GVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAFA----RPGPTLIEVDQACWFA 533 (535)
T ss_pred ccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEECCcccc
Confidence 112245789999999999999996 78899999988875 5899999999999876
No 64
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.73 E-value=1e-17 Score=141.38 Aligned_cols=112 Identities=25% Similarity=0.251 Sum_probs=89.7
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccccc---------
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~--------- 211 (276)
.++||+++|.|+|+++|. +++|||++|||+|++. . .+|.+|.++++|+++||.||+ |++....
T Consensus 50 ~g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~m~-~-~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~~ 122 (175)
T cd02009 50 ASGIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHD-L-NGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEF 122 (175)
T ss_pred ccchhhHHHHHHHHHhcC-----CCCEEEEEehHHHHHh-H-HHHHhccccCCCeEEEEEECCCCchheeccCCcccchh
Confidence 478999999999999984 6789999999999875 3 449999999999877777775 5532110
Q ss_pred cCcc---CCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 212 SDQF---RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 212 ~~~~---~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
.... ..+|+.+++++||+++.+|+ +++++.++++++++ .++|++||+.+
T Consensus 123 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~v 174 (175)
T cd02009 123 ERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALA----QDGPHVIEVKT 174 (175)
T ss_pred hhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 0111 25789999999999999996 78999999998875 47999999986
No 65
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.72 E-value=2.8e-17 Score=162.18 Aligned_cols=121 Identities=24% Similarity=0.283 Sum_probs=100.0
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeC-Cccccc-------c---
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIST-------P--- 210 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~-------~--- 210 (276)
.|+||+++|.|+|+++|.+ +++|||++|||+|+++...++++||+++++|+++||.|| +|++.. .
T Consensus 429 ~gsmG~~lp~aiGa~la~p----~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~ 504 (569)
T PRK08327 429 AGGLGWALGAALGAKLATP----DRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGY 504 (569)
T ss_pred CCCCCcchHHHHHHhhcCC----CCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcccc
Confidence 5899999999999998854 899999999999998754457999999999998888888 566421 0
Q ss_pred ------c-cCcc-CCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 023827 211 ------I-SDQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLS 268 (276)
Q Consensus 211 ------~-~~~~-~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 268 (276)
. .... +..|+++++++||+++.+|+ +++++.++++++++.++++++|+|||+.+..
T Consensus 505 ~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v~~ 568 (569)
T PRK08327 505 AARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIVDR 568 (569)
T ss_pred cccccccccccCCCCCCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEccC
Confidence 0 1112 45789999999999999997 8899999999999877777789999998754
No 66
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.72 E-value=1.9e-17 Score=162.09 Aligned_cols=117 Identities=28% Similarity=0.329 Sum_probs=96.8
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc---------c
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST---------P 210 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~---------~ 210 (276)
..|+||+++|.|+|++++.+ +++|||++|||+|++. .. +|.||.++++|+++||.||+ |++.. +
T Consensus 406 ~~GtMG~glPaAIGAkla~P----~r~Vv~i~GDG~F~m~-~q-EL~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~~ 479 (550)
T COG0028 406 GLGTMGFGLPAAIGAKLAAP----DRKVVAIAGDGGFMMN-GQ-ELETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGGR 479 (550)
T ss_pred CCccccchHHHHHHHHhhCC----CCcEEEEEcccHHhcc-HH-HHHHHHHhCCCEEEEEEECCccccchHHHHHhcCCC
Confidence 46899999999999999976 8999999999999985 44 49999999999999998887 44321 1
Q ss_pred ccCccCCcc-hhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 023827 211 ISDQFRSDG-AVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSF 269 (276)
Q Consensus 211 ~~~~~~~~~-~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 269 (276)
......... +.++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+++-
T Consensus 480 ~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~al~----~~~p~lidv~id~~ 533 (550)
T COG0028 480 YSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEALA----SDGPVLIDVVVDPE 533 (550)
T ss_pred cceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCc
Confidence 011111223 9999999999999998 88999999999987 58999999999987
No 67
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.72 E-value=1.4e-17 Score=164.91 Aligned_cols=122 Identities=20% Similarity=0.189 Sum_probs=97.4
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-cccccc-----cc---
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP-----IS--- 212 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~-----~~--- 212 (276)
.|+||+++|.|+|+++|.+ +++||+++|||+|++. .. +|.||.+|++|+++||.||+ |++... ..
T Consensus 417 ~gsmG~glpaaiGa~lA~p----dr~Vv~i~GDG~f~m~-~~-EL~Ta~r~~lpvv~iV~NN~~yg~i~~~q~~~~~~~~ 490 (588)
T TIGR01504 417 AGPLGWTIPAALGVCAADP----KRNVVALSGDYDFQFM-IE-ELAVGAQHNIPYIHVLVNNAYLGLIRQAQRAFDMDYC 490 (588)
T ss_pred cccccchHhHHHhhhhhCC----CCcEEEEEcchHhhcc-HH-HHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhccccc
Confidence 5899999999999999975 8899999999999986 34 49999999999888877776 653210 00
Q ss_pred -----Cc-------cCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 213 -----DQ-------FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 213 -----~~-------~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
.. ....|++++|++||+++.+|+ +++++.+++++|++.+++.++|+|||+++.+-..
T Consensus 491 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~~~~ 559 (588)
T TIGR01504 491 VQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEVILERVTN 559 (588)
T ss_pred ceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEeccccC
Confidence 00 014789999999999999996 7889999999998644335799999999987544
No 68
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.72 E-value=1.8e-16 Score=147.84 Aligned_cols=165 Identities=21% Similarity=0.155 Sum_probs=116.7
Q ss_pred hhHHHHHHHHhccCCCcEEEccCCcHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccccccccccch
Q 023827 72 GEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPH 151 (276)
Q Consensus 72 G~Ea~~~~~~~al~~~D~~~~~yR~~~~~~~~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~ 151 (276)
..+.+.-.+...+.++|.++.. .|....+++. ++ .+.++.|+. .+ ...|+||+++|.
T Consensus 173 ~r~~ai~~i~~~l~~~~iVV~~---------~G~~s~el~~-~~--------~~~~~~~~~----~f-~~~GsMG~a~p~ 229 (361)
T TIGR03297 173 TREEAIAAILDHLPDNTVIVST---------TGKTSRELYE-LR--------DRIGQGHAR----DF-LTVGSMGHASQI 229 (361)
T ss_pred CHHHHHHHHHHhCCCCCEEEEC---------CCCCcHHHHH-hh--------cccccCCCC----ce-EeechhhhHHHH
Confidence 3344444566777777877765 3444444332 22 123344431 22 235999999999
Q ss_pred hhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCC-CEEEEEEeCC-ccccccccCccCCcchhhhHhhcCc
Q 023827 152 AVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNG-WAISTPISDQFRSDGAVVKGRAYGV 229 (276)
Q Consensus 152 A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~-~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (276)
|+|+|++.+ +++|||+.|||+|.+.. .+|.+++++++ |+++||.||+ |+............|+.++|++||+
T Consensus 230 AlG~ala~p----~r~Vv~i~GDGsflm~~--~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~d~~~iA~a~G~ 303 (361)
T TIGR03297 230 ALGLALARP----DQRVVCLDGDGAALMHM--GGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQHLDFAQIAKACGY 303 (361)
T ss_pred HHHHHHHCC----CCCEEEEEChHHHHHHH--HHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCCCCHHHHHHHCCC
Confidence 999999875 78999999999997642 45999999997 8988888887 4433222222245789999999997
Q ss_pred -eEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 230 -RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 230 -~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
.+++| ++.+++.++++++.+ .++|+|||+++.+..+
T Consensus 304 ~~~~~v--~~~~eL~~al~~a~~----~~gp~lIeV~v~~g~~ 340 (361)
T TIGR03297 304 AKVYEV--STLEELETALTAASS----ANGPRLIEVKVRPGSR 340 (361)
T ss_pred ceEEEe--CCHHHHHHHHHHHHh----CCCcEEEEEEecCCCc
Confidence 56666 588999999998864 4789999999977654
No 69
>PRK12474 hypothetical protein; Provisional
Probab=99.71 E-value=4e-17 Score=159.40 Aligned_cols=113 Identities=27% Similarity=0.229 Sum_probs=91.5
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-cccccc---------c
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP---------I 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~---------~ 211 (276)
.|+||+++|.|+|+++|.+ +++|+|++|||+|++. .+| |.||.+++||+++||.||+ |++... .
T Consensus 388 ~gsmG~glpaAiGa~lA~p----~r~vv~i~GDG~f~m~-~qE-L~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~~~ 461 (518)
T PRK12474 388 GGSIGQGLPLAAGAAVAAP----DRKVVCPQGDGGAAYT-MQA-LWTMARENLDVTVVIFANRSYAILNGELQRVGAQGA 461 (518)
T ss_pred CCccCccHHHHHHHHHHCC----CCcEEEEEcCchhcch-HHH-HHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCCCC
Confidence 5899999999999999975 8899999999999985 344 9999999999887777776 654210 0
Q ss_pred c------C--ccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 212 S------D--QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 212 ~------~--~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
. . ..+..|+++++++||+++.+|+ +++++.+++++|++ .++|+|||+.+
T Consensus 462 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~--~~~eL~~al~~a~~----~~~p~liev~~ 518 (518)
T PRK12474 462 GRNALSMLDLHNPELNWMKIAEGLGVEASRAT--TAEEFSAQYAAAMA----QRGPRLIEAMI 518 (518)
T ss_pred CccccccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 0 0 1123589999999999999997 68899999998875 57999999974
No 70
>PRK06154 hypothetical protein; Provisional
Probab=99.71 E-value=3.9e-17 Score=161.00 Aligned_cols=121 Identities=23% Similarity=0.197 Sum_probs=96.9
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-cccccc-------cc-
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP-------IS- 212 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~-------~~- 212 (276)
.|+||+++|.|+|+++|.+ +++|||++|||+|++.. . +|.||++++||+++||.||+ |++... ..
T Consensus 430 ~gsmG~glpaaiGa~la~p----~r~Vv~i~GDG~f~m~~-~-EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~ 503 (565)
T PRK06154 430 TTQLGYGLGLAMGAKLARP----DALVINLWGDAAFGMTG-M-DFETAVRERIPILTILLNNFSMGGYDKVMPVSTTKYR 503 (565)
T ss_pred CcccccHHHHHHHHHHhCC----CCcEEEEEcchHHhccH-H-HHHHHHHhCCCeEEEEEECCccceeehhhhhhcCccc
Confidence 5899999999999999975 88999999999999853 4 49999999999988888776 553211 00
Q ss_pred CccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 213 DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 213 ~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
.....+|++++|++||+++.+|+ +++++.+++++|+++.+ .++|+|||+.+.+..-
T Consensus 504 ~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~-~~~p~lIev~v~~~~~ 559 (565)
T PRK06154 504 ATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKVK-EGTPALLEVITSEETA 559 (565)
T ss_pred ccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcc-CCCeEEEEEEeChHHh
Confidence 01113689999999999999997 78899999999986432 3689999999976543
No 71
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=99.71 E-value=2.4e-15 Score=145.61 Aligned_cols=232 Identities=17% Similarity=0.192 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhcCcccccccCChhHHH--HHHHHhccCC------CcEEEcc-CCcHHH---HHH
Q 023827 35 EGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAI--NIASAAAIKN------DDFVVPQ-YREPGV---LLW 102 (276)
Q Consensus 35 ~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~--~~~~~~al~~------~D~~~~~-yR~~~~---~~~ 102 (276)
..++.+=+|+.++....-..+....+..+++-++++...-|. -++....+++ +|.|+.. |-.++. ...
T Consensus 74 d~~lErrir~~irWna~a~vlRaskk~l~lGGH~aSfaSsatlyev~fnhffr~~~~~~ggDlV~~qgHaSPg~yArafL 153 (887)
T COG2609 74 DLELERRIRSLIRWNAHAMVLRASKKGLELGGHIASFASSATLYEVGFNHFFRAKSEKDGGDLVFFQGHASPGIYARAFL 153 (887)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHccCCCCCccchhhhhhhHHHHHHHHHHHHhcCcCCCCCCceEEEecCCCchHHHHHHH
Confidence 445677777777777773333322222334433332221111 1344455664 3888874 555444 345
Q ss_pred cCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCcc-ccccccccccchhhhHHHHhhhc-------CCCceEEEEEC
Q 023827 103 RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYF-TVSSTIATQLPHAVGAAYALKMD-------RKDACAVTYFG 173 (276)
Q Consensus 103 ~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~-~~~~-~~~g~lG~~l~~A~G~A~a~k~~-------~~~~~vv~~~G 173 (276)
.|...++.|..|++-. .|.+++++|+... +.++ .+++|||-|...|+-.|.-.||- .++++||||.|
T Consensus 154 eGRlseeqLdnFRqev----~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLG 229 (887)
T COG2609 154 EGRLTEEQLDNFRQEV----DGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLG 229 (887)
T ss_pred hccccHHHHHHHHHhc----cCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEec
Confidence 7999999999998753 3777888877653 4554 56899999999999999998873 46789999999
Q ss_pred CCcCCcchHHHHHHHHHHCCC-CEEEEEEeCCccccccccCccC-CcchhhhHhhcCceEEEE-----------------
Q 023827 174 DGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV----------------- 234 (276)
Q Consensus 174 DG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~-~~~~~~~a~a~G~~~~~v----------------- 234 (276)
||++.|++..+|+..|++++| |++|||+.|....+.|+..... ...+..++++.||.+++|
T Consensus 230 DgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVrgngkiiqelE~~FrgAGW~VikviWg~~wd~ll~kd~~gk 309 (887)
T COG2609 230 DGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAKDTGGK 309 (887)
T ss_pred CcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCcccCCchhHHHHHHHhccCCceEEEEEecccHHHHhcccCcch
Confidence 999999999999999999999 9999999999999888765321 245788899999999998
Q ss_pred ----------------------------------------------------cCCCHHHHHHHHHHHHHHhHccCCCEEE
Q 023827 235 ----------------------------------------------------DGNDALAIYSAVHAAREMAIGEGRPILI 262 (276)
Q Consensus 235 ----------------------------------------------------dg~d~~~v~~a~~~a~~~~r~~~~P~lI 262 (276)
-|||+..+++|+++|.++ .++|++|
T Consensus 310 L~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L~rGGHD~~ki~aA~~~A~~~---kg~Ptvi 386 (887)
T COG2609 310 LRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWALNRGGHDPEKVYAAFKKAQEH---KGRPTVI 386 (887)
T ss_pred HHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHHhcCCCCHHHHHHHHHHHhcC---CCCceEE
Confidence 489999999999999975 4589999
Q ss_pred EEEEecCCCCC
Q 023827 263 EVKCLSFSIFL 273 (276)
Q Consensus 263 e~~t~R~~g~~ 273 (276)
-++|.+.-|..
T Consensus 387 lA~TIKGyglg 397 (887)
T COG2609 387 LAKTIKGYGLG 397 (887)
T ss_pred EEeeeccccCc
Confidence 99999988765
No 72
>PRK08266 hypothetical protein; Provisional
Probab=99.70 E-value=9.4e-17 Score=157.51 Aligned_cols=119 Identities=28% Similarity=0.348 Sum_probs=96.7
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeC-Ccccccc---------c
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP---------I 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~---------~ 211 (276)
.|+||+++|.|+|++++.+ +++|+|++|||+|+++ . ++|.+|.+++||+++||.|| +|++... .
T Consensus 401 ~GsmG~~lp~aiGa~la~p----~~~vv~v~GDG~f~~~-~-~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~~ 474 (542)
T PRK08266 401 QGTLGYGFPTALGAKVANP----DRPVVSITGDGGFMFG-V-QELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGRV 474 (542)
T ss_pred CcccccHHHHHHHHHHhCC----CCcEEEEEcchhhhcc-H-HHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCc
Confidence 5899999999999998864 7899999999999986 3 56999999999998888777 4764211 0
Q ss_pred -cCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 023827 212 -SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIF 272 (276)
Q Consensus 212 -~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~ 272 (276)
......+|+++++++||+++.+|+ +++++.++++++.+ .++|+|||++|+|...+
T Consensus 475 ~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i~~~~~~ 530 (542)
T PRK08266 475 VASDLVNPDFVKLAESFGVAAFRVD--SPEELRAALEAALA----HGGPVLIEVPVPRGSEA 530 (542)
T ss_pred ccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEecCCCCc
Confidence 011234689999999999999997 57788888888775 57899999999988765
No 73
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.70 E-value=1e-16 Score=158.30 Aligned_cols=119 Identities=23% Similarity=0.269 Sum_probs=96.1
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc-------c--
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST-------P-- 210 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~-------~-- 210 (276)
..|+||+++|.|+|+++|.+ +++|+|++|||+|++. +.| |.||++++||+++||.||+ |++.. .
T Consensus 406 ~~G~mG~~lpaAiGa~la~p----~r~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~~ 479 (574)
T PRK09124 406 NHGSMANAMPQALGAQAAHP----GRQVVALSGDGGFSML-MGD-FLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYLT 479 (574)
T ss_pred CcccccchHHHHHHHHHhCC----CCeEEEEecCcHHhcc-HHH-HHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCcc
Confidence 45899999999999999875 7899999999999885 455 9999999999877777665 65421 0
Q ss_pred ccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 211 ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 211 ~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
.......+|++++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+...
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~i~~~~~ 534 (574)
T PRK09124 480 DGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAFA----HDGPALVDVVTAKQEL 534 (574)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCccc
Confidence 0011234689999999999999997 78899999998875 4789999999987654
No 74
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.70 E-value=1e-16 Score=158.12 Aligned_cols=117 Identities=20% Similarity=0.268 Sum_probs=95.2
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-cccccc---------c
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP---------I 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~---------~ 211 (276)
.|+||+++|.|+|+++|.+ +++|+|++|||+|++. ++| |.+|.+|+||+++||.||+ |++... .
T Consensus 421 ~gsmG~~lp~aiGa~lA~p----~~~vv~i~GDG~f~~~-~~e-l~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~~~~~ 494 (570)
T PRK06725 421 LGTMGFGFPAAIGAQLAKE----EELVICIAGDASFQMN-IQE-LQTIAENNIPVKVFIINNKFLGMVRQWQEMFYENRL 494 (570)
T ss_pred cccccchhhHHHhhHhhcC----CCeEEEEEecchhhcc-HHH-HHHHHHhCCCeEEEEEECCccHHHHHHHHHhcCCcc
Confidence 4899999999999999864 8899999999999875 455 9999999999999988887 443210 0
Q ss_pred -cCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 212 -SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 212 -~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
......+|+++++++||+++.+|+ +++++.++++++++ .++|+|||+.+.+..
T Consensus 495 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~id~~~ 548 (570)
T PRK06725 495 SESKIGSPDFVKVAEAYGVKGLRAT--NSTEAKQVMLEAFA----HEGPVVVDFCVEEGE 548 (570)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCCcc
Confidence 012235789999999999999995 78898888888875 479999999998644
No 75
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.70 E-value=8.7e-17 Score=159.44 Aligned_cols=117 Identities=20% Similarity=0.292 Sum_probs=95.4
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc--------c-c
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST--------P-I 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~--------~-~ 211 (276)
.|+||+++|.|+|+++|.+ +++||+++|||+|++. ..| |.||++|+||+++||.||+ |++.. . .
T Consensus 429 ~gsmG~glpaaiGa~lA~p----~r~Vv~i~GDG~f~m~-~~E-L~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~~~~~ 502 (595)
T PRK09107 429 LGTMGYGLPAALGVQIAHP----DALVIDIAGDASIQMC-IQE-MSTAVQYNLPVKIFILNNQYMGMVRQWQQLLHGNRL 502 (595)
T ss_pred chhhhhhHHHHHHHHHhCC----CCeEEEEEcCchhhcc-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 4899999999999999865 8899999999999985 344 9999999999988888886 54311 0 0
Q ss_pred cCc-c-CCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 212 SDQ-F-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 212 ~~~-~-~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
... . ..+|++++|++||+++.+|+ +++++.+++++|.+ .++|+|||+.+.+..
T Consensus 503 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~~~ 557 (595)
T PRK09107 503 SHSYTEAMPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEMID----VDKPVIFDCRVANLE 557 (595)
T ss_pred ccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecCcc
Confidence 111 1 24689999999999999996 78899999998886 478999999998654
No 76
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.70 E-value=4.6e-17 Score=161.32 Aligned_cols=121 Identities=21% Similarity=0.183 Sum_probs=97.3
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-cccccc---------c
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP---------I 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~---------~ 211 (276)
.|+||+++|.|+|+++|.+ +++|||++|||+|++. .+| |.||.+++||+++||.||+ |++... .
T Consensus 418 ~G~mG~glpaAiGa~la~p----~r~Vv~i~GDG~f~m~-~~e-L~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~~~ 491 (591)
T PRK11269 418 AGPLGWTIPAALGVRAADP----DRNVVALSGDYDFQFL-IEE-LAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMDYC 491 (591)
T ss_pred cccccchhhhHHhhhhhCC----CCcEEEEEccchhhcC-HHH-HHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccCcc
Confidence 5899999999999999865 7899999999999885 345 9999999999988888887 553110 0
Q ss_pred -cC---c-------cCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 212 -SD---Q-------FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 212 -~~---~-------~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
.. . .+..|++++|++||+++.+|+ +++++.+++++|++...+.++|+|||+++.+-.
T Consensus 492 ~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV~v~~~~ 559 (591)
T PRK11269 492 VQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEVILERVT 559 (591)
T ss_pred ceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecccc
Confidence 00 0 023789999999999999996 788999999999864434579999999998654
No 77
>PRK05858 hypothetical protein; Provisional
Probab=99.70 E-value=7.1e-17 Score=158.43 Aligned_cols=117 Identities=21% Similarity=0.189 Sum_probs=95.9
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc---------cc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST---------PI 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~---------~~ 211 (276)
.|+||+++|.|+|+++|.+ +++|||++|||+|++. ++| |.||++|++|+++||.||+ |++.. +.
T Consensus 406 ~gsmG~~lp~aiGa~la~p----~r~vv~i~GDG~f~~~-~~e-L~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~ 479 (542)
T PRK05858 406 FGCLGTGPGYALAARLARP----SRQVVLLQGDGAFGFS-LMD-VDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYGYDV 479 (542)
T ss_pred ccccccchhHHHHHHHhCC----CCcEEEEEcCchhcCc-HHH-HHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcCCcc
Confidence 5899999999999999875 8899999999999985 455 9999999999888887775 55321 00
Q ss_pred -cCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 212 -SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 212 -~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
.+..+.+|+.+++++||.++.+|+ +++++.+++++|++ .++|+|||+.|.+-.
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~~~~~~ 533 (542)
T PRK05858 480 AADLRPGTRYDEVVRALGGHGELVT--VPAELGPALERAFA----SGVPYLVNVLTDPSV 533 (542)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEECCCc
Confidence 011145799999999999999997 68899999999886 579999999998664
No 78
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.70 E-value=1.1e-16 Score=158.13 Aligned_cols=117 Identities=25% Similarity=0.322 Sum_probs=96.6
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc--------ccc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST--------PIS 212 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~--------~~~ 212 (276)
.|+||+++|.|+|+++|.+ +++|+|++|||+|+++ +.| |.+|+++++|+++||.||+ |++.. +..
T Consensus 407 ~gsmG~~~paAiGa~la~p----~~~vv~i~GDGsf~~~-~~e-l~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~~~ 480 (578)
T PRK06546 407 HGSMANALPHAIGAQLADP----GRQVISMSGDGGLSML-LGE-LLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLPDF 480 (578)
T ss_pred cccccchhHHHHHHHHhCC----CCcEEEEEcCchHhhh-HHH-HHHHHHhCCCeEEEEEECCccccHHHHHHhcCCCcc
Confidence 5899999999999999975 7899999999999974 455 9999999999988888886 45321 111
Q ss_pred -CccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 213 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 213 -~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
......|+++++++||+++.+|+ +++++.++++++++ .++|+|||+++.+..
T Consensus 481 ~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~~~ 533 (578)
T PRK06546 481 GTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAFA----HPGPALVDVVTDPNA 533 (578)
T ss_pred cccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCCCc
Confidence 11345799999999999999997 78999999998876 579999999998765
No 79
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.70 E-value=7e-17 Score=158.35 Aligned_cols=118 Identities=19% Similarity=0.274 Sum_probs=95.8
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-cccccc-----cc---
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP-----IS--- 212 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~-----~~--- 212 (276)
.|+||+++|.|+|+++|.+ +++|||++|||+|++. ..| |.||++++||+++||.||+ |++... ..
T Consensus 407 ~g~mG~~lpaaiGa~la~~----~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~ 480 (539)
T TIGR02418 407 MQTLGVALPWAIGAALVRP----NTKVVSVSGDGGFLFS-SME-LETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQRSS 480 (539)
T ss_pred ccccccHHHHHHHHHHhCC----CCcEEEEEcchhhhch-HHH-HHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCcc
Confidence 5799999999999999975 7899999999999985 444 9999999999888777765 654210 00
Q ss_pred -CccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 213 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 213 -~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
......|+.++|++||+++.+|+ +++++.+++++|.+ .++|+|||+.+.+..+
T Consensus 481 ~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~v~~~~~ 534 (539)
T TIGR02418 481 GVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAME----VEGPVVVDIPVDYSDN 534 (539)
T ss_pred cccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecCccc
Confidence 01235789999999999999997 68899999998875 4789999999987654
No 80
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.70 E-value=1.9e-16 Score=135.85 Aligned_cols=121 Identities=17% Similarity=0.133 Sum_probs=92.0
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCc-CCcchHHHHHHHHHHCCCCEEEEEEeCC-cccccccc-------
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGG-TSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS------- 212 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~-~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~------- 212 (276)
.++||+++|.|+|+++|.+ +++||++.|||+ ++++ +.| |.+|.++++|+++||.||+ |++.....
T Consensus 50 ~g~mG~glpaAiGa~la~p----~r~Vv~i~GDGs~f~m~-~~e-L~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~ 123 (193)
T cd03375 50 HTLHGRALAVATGVKLANP----DLTVIVVSGDGDLAAIG-GNH-FIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEG 123 (193)
T ss_pred hhhhccHHHHHHHHHHhCC----CCeEEEEeccchHhhcc-HHH-HHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCC
Confidence 3889999999999999865 899999999999 4665 344 9999999999988887775 44422110
Q ss_pred ---------CccCCcchhhhHhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 023827 213 ---------DQFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIF 272 (276)
Q Consensus 213 ---------~~~~~~~~~~~a~a~G~~~~-~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~ 272 (276)
...+..|+.+++++||+++. ++.-.++.++.+++++|++ .++|++||+.+.=..|.
T Consensus 124 ~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~----~~gp~vIev~~~C~~~~ 189 (193)
T cd03375 124 FKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ----HKGFSFVEVLSPCPTFP 189 (193)
T ss_pred CcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh----cCCCEEEEEECCCCCCC
Confidence 00123689999999999985 2233578999999999886 47999999987544443
No 81
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.70 E-value=8.2e-17 Score=157.59 Aligned_cols=114 Identities=30% Similarity=0.381 Sum_probs=93.7
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc----------c
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST----------P 210 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~----------~ 210 (276)
.|+||+++|.|+|++++.+ +++|+|++|||+|+++. ++|.+|.++++|+++||.||+ |++.. .
T Consensus 406 ~g~mG~~lp~aiGa~la~p----~~~vv~i~GDG~f~~~~--~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~~~ 479 (530)
T PRK07092 406 SGGLGYGLPAAVGVALAQP----GRRVIGLIGDGSAMYSI--QALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVRDV 479 (530)
T ss_pred CCcccchHHHHHHHHHhCC----CCeEEEEEeCchHhhhH--HHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCCCC
Confidence 6899999999999999864 78999999999999863 669999999999988888887 76521 1
Q ss_pred ccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEe
Q 023827 211 ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCL 267 (276)
Q Consensus 211 ~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~ 267 (276)
........|+++++++||+++.+|+ ++.++.++++++.+ .++|+|||+.++
T Consensus 480 ~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~~d 530 (530)
T PRK07092 480 PGLDLPGLDFVALARGYGCEAVRVS--DAAELADALARALA----ADGPVLVEVEVA 530 (530)
T ss_pred CCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEcC
Confidence 1112245789999999999999997 57788777777764 579999999874
No 82
>PRK07064 hypothetical protein; Provisional
Probab=99.69 E-value=1.5e-16 Score=156.17 Aligned_cols=116 Identities=23% Similarity=0.318 Sum_probs=93.6
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc----------c
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST----------P 210 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~----------~ 210 (276)
.|+||+++|.|+|+++|.+ +++|++++|||+|++. .. +|.+|.++++|+++||.||+ |++.. .
T Consensus 404 ~g~mG~~lpaAiGa~lA~p----~~~vv~i~GDGsf~m~-~~-eL~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~~~~~~ 477 (544)
T PRK07064 404 GGGIGQGLAMAIGAALAGP----GRKTVGLVGDGGLMLN-LG-ELATAVQENANMVIVLMNDGGYGVIRNIQDAQYGGRR 477 (544)
T ss_pred CCccccccchhhhhhhhCc----CCcEEEEEcchHhhhh-HH-HHHHHHHhCCCeEEEEEeCChhHHHHHHHHHhcCCcc
Confidence 4799999999999999964 7899999999999885 34 49999999999888877665 65421 1
Q ss_pred ccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 023827 211 ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSF 269 (276)
Q Consensus 211 ~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 269 (276)
.......+|+.+++++||+++.+|+ +++++.++++++++ .++|+|||+.++..
T Consensus 478 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~~~ 530 (544)
T PRK07064 478 YYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREALA----KEGPVLVEVDMLSI 530 (544)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEcccc
Confidence 1112235789999999999999996 67899999988875 47899999999743
No 83
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.69 E-value=9.8e-17 Score=141.57 Aligned_cols=118 Identities=21% Similarity=0.272 Sum_probs=92.2
Q ss_pred ccccccccccchhhhHHHHhhhcCCCceEEEEECCCcC-CcchHHHHHHHHHHCCCCEEEEEEeCC-cccc----cccc-
Q 023827 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAIS----TPIS- 212 (276)
Q Consensus 140 ~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~-~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~----~~~~- 212 (276)
...++||+++|.|+|++++.+ +++|||++|||++ +++ +. +|.+|+++++|+++||.||+ |++. .+..
T Consensus 59 ~~~gsmG~GlpaAiGa~~a~p----~r~VV~i~GDG~~~~m~-~~-eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~ 132 (235)
T cd03376 59 ENAAAVASGIEAALKALGRGK----DITVVAFAGDGGTADIG-FQ-ALSGAAERGHDILYICYDNEAYMNTGIQRSGSTP 132 (235)
T ss_pred cCHHHHHHHHHHHHHHhccCC----CCeEEEEEcCchHHhhH-HH-HHHHHHHcCCCeEEEEECCcccccCCCCCCCCCC
Confidence 345799999999999877654 8899999999995 675 34 49999999999999998887 4521 1110
Q ss_pred ----------------CccCCcchhhhHhhcCceEEE-EcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEe
Q 023827 213 ----------------DQFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEVKCL 267 (276)
Q Consensus 213 ----------------~~~~~~~~~~~a~a~G~~~~~-vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~ 267 (276)
......|+.++|+++|++++. ++..+++++.++++++++ .++|+|||+.+.
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~----~~gP~lIev~~~ 200 (235)
T cd03376 133 YGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALS----IEGPAYIHILSP 200 (235)
T ss_pred CCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEECC
Confidence 011346899999999999873 556789999999999886 478999999764
No 84
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.69 E-value=1.8e-16 Score=156.54 Aligned_cols=121 Identities=23% Similarity=0.248 Sum_probs=96.8
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc---------cc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST---------PI 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~---------~~ 211 (276)
.|+||+++|.|+|+++|.+ +++|||++|||+|++.. .+|.||.+++||+++||.||+ |++.. ..
T Consensus 420 ~g~mG~glpaaiGa~la~p----~~~vv~i~GDG~f~m~~--~eL~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~~~ 493 (574)
T PRK07979 420 LGTMGFGLPAALGVKMALP----EETVVCVTGDGSIQMNI--QELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGRH 493 (574)
T ss_pred ccchhhHHHHHHHHHHhCC----CCeEEEEEcchhhhccH--HHHHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCCcc
Confidence 4899999999999999975 78999999999999853 459999999999988888776 54311 11
Q ss_pred cCc--cCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 212 SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 212 ~~~--~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
... .+.+|+.++|++||+++.+|+ +++++.+++++|++.++ .++|+|||+.+.+...
T Consensus 494 ~~~~~~~~~d~~~iA~a~G~~g~~v~--~~~eL~~al~~a~~~~~-~~~p~lIeV~i~~~~~ 552 (574)
T PRK07979 494 SQSYMQSLPDFVRLAEAYGHVGIQIS--HPDELESKLSEALEQVR-NNRLVFVDVTVDGSEH 552 (574)
T ss_pred ccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhccC-CCCcEEEEEEECCccC
Confidence 111 134689999999999999996 78899999999987433 3689999999986553
No 85
>PRK07586 hypothetical protein; Validated
Probab=99.69 E-value=1e-16 Score=156.26 Aligned_cols=113 Identities=30% Similarity=0.251 Sum_probs=90.5
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc-------c-c-
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST-------P-I- 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~-------~-~- 211 (276)
.|+||+++|.|+|+++|.+ +++|+|++|||+|++. . .+|.||.+++||+++||.||+ |++.. . .
T Consensus 384 ~g~mG~~lpaaiGa~lA~p----~r~Vv~i~GDGsf~m~-~-~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~ 457 (514)
T PRK07586 384 GGAIGQGLPLATGAAVACP----DRKVLALQGDGSAMYT-I-QALWTQARENLDVTTVIFANRAYAILRGELARVGAGNP 457 (514)
T ss_pred CcccccHHHHHHHHHHhCC----CCeEEEEEechHHHhH-H-HHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCCCC
Confidence 4899999999999999975 8899999999999985 3 459999999999877776665 76421 0 0
Q ss_pred -c------C-ccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 212 -S------D-QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 212 -~------~-~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
. + ..+..|++++|++||+++.+|+ ++.++.+++++|++ .++|+|||+++
T Consensus 458 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~~----~~~p~liev~~ 514 (514)
T PRK07586 458 GPRALDMLDLDDPDLDWVALAEGMGVPARRVT--TAEEFADALAAALA----EPGPHLIEAVV 514 (514)
T ss_pred CccccccccCCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 0 0 1124689999999999999996 68899888888875 47999999974
No 86
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.69 E-value=7.1e-16 Score=152.91 Aligned_cols=223 Identities=10% Similarity=0.040 Sum_probs=158.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhHHHHHHHH-HhcCcccccccCChhHHHHHHHHhccC-CCcEEEc--cCCcHHHHHHcC
Q 023827 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEA-QRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLWRG 104 (276)
Q Consensus 29 ~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~-~~~g~~~~~~~~~G~Ea~~~~~~~al~-~~D~~~~--~yR~~~~~~~~G 104 (276)
|.+.++.++|.+|-..+ |.+ .+... .+.| +...++.|-=-..+++-..++ |.|-|+. .|....|=+..|
T Consensus 87 dlk~L~~~eL~~La~Ei---R~~--li~~v~s~~G--GHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~HKiLTG 159 (701)
T PLN02225 87 QLKNLSVKELKLLADEI---RTE--LHSVLWKKTQ--KSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQTYAHKVLTR 159 (701)
T ss_pred HHhhCCHHHHHHHHHHH---HHH--HHHHhhcccC--CCcCCCccHHHHHHHHHHHhCCCCCceeeccccccchhhHhcC
Confidence 45677888877776554 533 22322 2332 344567775555567767776 6787766 588888888888
Q ss_pred CCHHHHHHHhhcCCCCCCCCCCCccccCCCCC-CccccccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHH
Q 023827 105 FSMQEFANQCFGNKADYGKGRQMPIHYGSNKH-NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFH 183 (276)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~~-~~~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~ 183 (276)
+. +.|.. +.. .++++.+...+. .-....|+-+..+++|.|+|.|..+++.++.||+++|||++.-|+.+
T Consensus 160 R~--~~f~~-Rq~-------~GlsGf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgGma~ 229 (701)
T PLN02225 160 RW--SAIPS-RQK-------NGISGVTSQLESEYDSFGTGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAGQAY 229 (701)
T ss_pred Ch--hhcCc-ccc-------CCcCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhhhHH
Confidence 63 33332 221 344444443322 12345789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCEEEEEEeCCcccccc--------ccC--------------------------ccC--Ccch-------
Q 023827 184 AALNFSAVTEAPVIFICRNNGWAISTP--------ISD--------------------------QFR--SDGA------- 220 (276)
Q Consensus 184 Eal~~A~~~~Lpvi~vv~nN~~~~~~~--------~~~--------------------------~~~--~~~~------- 220 (276)
||||-|...+-|+|+|++||+.+|+.+ +.. ..+ ...+
T Consensus 230 EaLN~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (701)
T PLN02225 230 EAMSNAGYLDSNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEY 309 (701)
T ss_pred HHHhhhhccCCCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999999998766 110 000 0000
Q ss_pred --------h-hhHhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 221 --------V-VKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 221 --------~-~~a~a~G~~~~-~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
. .+++.+|+.++ .|||||.+++.++++++.+. ..++|+||+++|-+.+
T Consensus 310 ~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~--~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 310 ARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSL--DSMGPVLVHVITEENR 367 (701)
T ss_pred hhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcC--CCCCCEEEEEEecCCC
Confidence 1 36788999988 89999999999999988753 1238999999997654
No 87
>PLN02573 pyruvate decarboxylase
Probab=99.68 E-value=1.2e-16 Score=158.04 Aligned_cols=118 Identities=18% Similarity=0.129 Sum_probs=94.4
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccccc----cCccC
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI----SDQFR 216 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~----~~~~~ 216 (276)
.|+||+++|.|+|+++|.+ +++|||++|||+|++. .+| |.||++++||+++||.||+ |++.... .....
T Consensus 427 ~gsmG~glpaaiGa~lA~p----~r~vv~i~GDG~f~m~-~~E-L~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~~~ 500 (578)
T PLN02573 427 YGSIGWSVGATLGYAQAAP----DKRVIACIGDGSFQVT-AQD-VSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNVIK 500 (578)
T ss_pred hhhhhhhhhHHHHHHHhCC----CCceEEEEeccHHHhH-HHH-HHHHHHcCCCCEEEEEeCCceeEEEeecccCccccC
Confidence 5899999999999999975 7899999999999985 344 9999999999887777665 6643211 11224
Q ss_pred CcchhhhHhhcC-----ceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 023827 217 SDGAVVKGRAYG-----VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSF 269 (276)
Q Consensus 217 ~~~~~~~a~a~G-----~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 269 (276)
..|+++++++|| +++.+|+ +++++.+++++|+.. +.++|+|||+++.+.
T Consensus 501 ~~d~~~lA~a~G~~~g~~~~~~V~--~~~eL~~al~~a~~~--~~~~p~lieV~v~~~ 554 (578)
T PLN02573 501 NWNYTGLVDAIHNGEGKCWTAKVR--TEEELIEAIATATGE--KKDCLCFIEVIVHKD 554 (578)
T ss_pred CCCHHHHHHHhcCcCCceeEEEec--CHHHHHHHHHHHHhh--CCCCcEEEEEEcCcC
Confidence 578999999995 8999997 688999999988742 247899999998654
No 88
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.68 E-value=2.7e-16 Score=155.26 Aligned_cols=119 Identities=24% Similarity=0.319 Sum_probs=95.2
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc---------cc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST---------PI 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~---------~~ 211 (276)
.|+||+++|.|+|+++|.+ +++|||++|||+|++. ..| |.||.+++||+++||.||+ |++.. +.
T Consensus 420 ~g~mG~glpaaiGa~la~p----~~~vv~i~GDG~f~m~-~~E-L~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~~~ 493 (572)
T PRK08979 420 LGTMGFGLPAAMGVKFAMP----DETVVCVTGDGSIQMN-IQE-LSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQGRH 493 (572)
T ss_pred cccccchhhHHHhhhhhCC----CCeEEEEEcchHhhcc-HHH-HHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 4799999999999999965 7899999999999985 344 9999999999888887776 54321 10
Q ss_pred cCc-c-CCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 212 SDQ-F-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 212 ~~~-~-~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
... . ..+|++++|++||.++.+|+ ++.++.++++++.+. .++|+|||+.+.+...
T Consensus 494 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lIev~i~~~~~ 550 (572)
T PRK08979 494 SHSYMDSVPDFAKIAEAYGHVGIRIS--DPDELESGLEKALAM---KDRLVFVDINVDETEH 550 (572)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCCccc
Confidence 111 1 24689999999999999997 788999999988752 3789999999986543
No 89
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.68 E-value=3.6e-16 Score=154.13 Aligned_cols=119 Identities=26% Similarity=0.308 Sum_probs=96.0
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc---------cc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST---------PI 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~---------~~ 211 (276)
.|+||+++|.|+|+++|.+ +++|||++|||+|++. +.| |.+|.+++||+++||.||+ |++.. ..
T Consensus 413 ~g~mG~~l~~aiGa~la~p----~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~~~~~ 486 (563)
T PRK08527 413 LGTMGYGLPAALGAKLAVP----DKVVINFTGDGSILMN-IQE-LMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEERY 486 (563)
T ss_pred cccccchHHHHHHHHHhCC----CCcEEEEecCchhccc-HHH-HHHHHHhCCCeEEEEEECCcchhHHHHHHhhcCCce
Confidence 4899999999999999975 7889999999999984 456 9999999999988887776 44311 00
Q ss_pred --cCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 023827 212 --SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIF 272 (276)
Q Consensus 212 --~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~ 272 (276)
.+....+|+.+++++||+++++|+ +++++.++++++++ .++|+|||+.+++...+
T Consensus 487 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~v~~~~~~ 543 (563)
T PRK08527 487 SETDLSTQPDFVKLAESFGGIGFRVT--TKEEFDKALKEALE----SDKVALIDVKIDRFENV 543 (563)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEECCcccc
Confidence 011124689999999999999996 68899999988875 47899999999986644
No 90
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.68 E-value=2.7e-16 Score=155.97 Aligned_cols=118 Identities=25% Similarity=0.302 Sum_probs=95.8
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHC-----CCCEEEEEEeCC-cccc-------
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-----EAPVIFICRNNG-WAIS------- 208 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~-----~Lpvi~vv~nN~-~~~~------- 208 (276)
.|+||+++|.|+|+++|.+ +++|+|++|||+|++....| |.||++| +||+++||.||+ |++.
T Consensus 414 ~g~mG~glpaaiGa~la~p----~~~Vv~i~GDG~f~m~~~~E-L~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~~~ 488 (597)
T PRK08273 414 LATMGPAVPYAIAAKFAHP----DRPVIALVGDGAMQMNGMAE-LITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQRVM 488 (597)
T ss_pred cccccchHHHHHHHHHhCC----CCcEEEEEcchhHhccchHH-HHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHHHh
Confidence 4899999999999999975 88999999999998753445 9999999 899988888886 5431
Q ss_pred --ccc---cCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 209 --TPI---SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 209 --~~~---~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
.+. ....+..|++++|++||+++.+|+ +++++..++++|.+ .++|+|||+++.+..
T Consensus 489 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~~~~ 549 (597)
T PRK08273 489 EGDPKFEASQDLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEALA----ADRPVVLEVKTDPNV 549 (597)
T ss_pred cCCCcccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCCCC
Confidence 111 111245789999999999999997 68899999998875 479999999998754
No 91
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.68 E-value=3.5e-16 Score=154.49 Aligned_cols=120 Identities=20% Similarity=0.279 Sum_probs=96.0
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-cccc---------ccc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIS---------TPI 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~---------~~~ 211 (276)
.|+||+++|.|+|+++|.+ +++|+|++|||+|++. . ++|.+|.++++|+++||.||+ |++. ...
T Consensus 420 ~g~mG~~lp~aiGa~la~p----~~~vv~i~GDG~f~~~-~-~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~~~ 493 (574)
T PRK06882 420 AGTMGFGLPAAIGVKFAHP----EATVVCVTGDGSIQMN-I-QELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSGRH 493 (574)
T ss_pred cccccchhHHHHHHHhhcC----CCcEEEEEcchhhhcc-H-HHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcCCcc
Confidence 5899999999999999864 7899999999999885 3 559999999999988888887 4321 110
Q ss_pred cCc--cCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 023827 212 SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIF 272 (276)
Q Consensus 212 ~~~--~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~ 272 (276)
... ...+|+++++++||+++++|+ +.+++.++++++++. .++|+|||+.+.+....
T Consensus 494 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~liev~i~~~~~~ 551 (574)
T PRK06882 494 SQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSI---KDKLVFVDVNVDETEHV 551 (574)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEecCcccc
Confidence 111 124689999999999999997 678999999888863 36899999999876543
No 92
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.67 E-value=3e-16 Score=155.38 Aligned_cols=118 Identities=21% Similarity=0.272 Sum_probs=95.2
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-cccc---------ccc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIS---------TPI 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~---------~~~ 211 (276)
.|+||+++|.|+|+++|.+ +++|||++|||+|++.. .+|.||.++++|+++||.||+ |++. .+.
T Consensus 436 ~gsmG~glpaaiGa~lA~p----~r~Vv~i~GDGsf~m~~--~eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~~~ 509 (587)
T PRK06965 436 LGTMGVGLPYAMGIKMAHP----DDDVVCITGEGSIQMCI--QELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSKRY 509 (587)
T ss_pred cccccchHHHHHHHHHhCC----CCcEEEEEcchhhhcCH--HHHHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCCCc
Confidence 4799999999999999965 78999999999999853 449999999999988888886 4321 111
Q ss_pred cCc-c-CCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 212 SDQ-F-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 212 ~~~-~-~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
... . ..+|+++++++||+++.+|+ +.+++.+++++|+++ .++|+|||+.+.+..
T Consensus 510 ~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lieV~i~~~~ 565 (587)
T PRK06965 510 SHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPALREALRL---KDRTVFLDFQTDPTE 565 (587)
T ss_pred cccCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEecccc
Confidence 111 1 24689999999999999996 788999999998863 368999999998654
No 93
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.67 E-value=2.9e-16 Score=155.13 Aligned_cols=120 Identities=22% Similarity=0.286 Sum_probs=95.5
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc--------ccc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST--------PIS 212 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~--------~~~ 212 (276)
.|+||+++|.|+|+++|.+ +++|++++|||+|++. ..| |.|++++++|+++||.||+ |++.. +..
T Consensus 407 ~gsmG~glpaAiGa~la~p----~r~Vv~i~GDGsf~m~-~~e-L~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~~ 480 (575)
T TIGR02720 407 FATMGVGVPGAIAAKLNYP----DRQVFNLAGDGAFSMT-MQD-LLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPLI 480 (575)
T ss_pred cchhhchHHHHHHHHHhCC----CCcEEEEEcccHHHhh-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCcc
Confidence 5899999999999999865 8899999999999985 444 9999999999887766554 76421 011
Q ss_pred -CccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 213 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 213 -~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
.....+|++++|++||+++.+|+ +.+++.++++++++ . +.++|+|||+++..-.-
T Consensus 481 ~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~-~-~~~~p~liev~i~~~~~ 536 (575)
T TIGR02720 481 GVDFNDADFAKIAEGVGAVGFRVN--KIEQLPAVFEQAKA-I-KQGKPVLIDAKITGDRP 536 (575)
T ss_pred cccCCCCCHHHHHHHCCCEEEEeC--CHHHHHHHHHHHHh-h-CCCCcEEEEEEeCCCCC
Confidence 11235789999999999999996 67899999999874 2 35799999999977543
No 94
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.67 E-value=3.2e-16 Score=154.26 Aligned_cols=119 Identities=24% Similarity=0.338 Sum_probs=95.5
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc-cc-------
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST-PI------- 211 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~-~~------- 211 (276)
..|+||+++|.|+|++++.+ +++|||++|||+|++.. ++|.+|+++++|+++||.||+ |++.. ..
T Consensus 413 ~~g~mG~glpaaiGa~la~p----~~~vv~i~GDGsf~~~~--~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~~~ 486 (557)
T PRK08199 413 TSGSMGYGLPAAIAAKLLFP----ERTVVAFAGDGCFLMNG--QELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPGR 486 (557)
T ss_pred CCccccchHHHHHHHHHhCC----CCcEEEEEcchHhhccH--HHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCc
Confidence 36899999999999999865 88999999999998743 559999999999999988887 65321 00
Q ss_pred --cCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 212 --SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 212 --~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
.......|+++++++||+++.+|+ +++++.++++++++ .++|+|||+++.+...
T Consensus 487 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~li~v~~~~~~~ 542 (557)
T PRK08199 487 VSGTDLTNPDFAALARAYGGHGETVE--RTEDFAPAFERALA----SGKPALIEIRIDPEAI 542 (557)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCHHHc
Confidence 011234689999999999999997 67788888888764 5789999999986543
No 95
>PRK08611 pyruvate oxidase; Provisional
Probab=99.67 E-value=3.9e-16 Score=154.29 Aligned_cols=118 Identities=23% Similarity=0.287 Sum_probs=95.0
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc---------cc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST---------PI 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~---------~~ 211 (276)
.|+||+++|.|+|++++.+ +++||+++|||+|++. .. +|.+|+++++|+++||.||+ |++.. ..
T Consensus 407 ~g~mG~glpaaiGa~la~p----~~~Vv~i~GDGsf~m~-~~-eL~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~~ 480 (576)
T PRK08611 407 LGTMGCGLPGAIAAKIAFP----DRQAIAICGDGGFSMV-MQ-DFVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELEY 480 (576)
T ss_pred chhhhhhHHHHHHHHHhCC----CCcEEEEEcccHHhhh-HH-HHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCcc
Confidence 5899999999999999864 7899999999999985 34 49999999999877776664 55411 01
Q ss_pred cCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 212 SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 212 ~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
.......|++++|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+...
T Consensus 481 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~vd~~~~ 534 (576)
T PRK08611 481 AIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFEEALA----QDKPVIIDVYVDPNAA 534 (576)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCCccc
Confidence 111235799999999999999996 78899999988875 4799999999987653
No 96
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.67 E-value=3.6e-16 Score=154.40 Aligned_cols=118 Identities=24% Similarity=0.268 Sum_probs=94.7
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc---------cc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST---------PI 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~---------~~ 211 (276)
.|+||+++|.|+|+++|.+ +++|||++|||+|++. ..| |.||.++++|+++||.||+ |++.. +.
T Consensus 422 ~gsmG~glpaAiGa~la~p----~r~Vv~i~GDG~f~m~-~~e-L~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~~~ 495 (574)
T PRK06466 422 LGTMGFGLPAAMGVKLAFP----DQDVACVTGEGSIQMN-IQE-LSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEGRH 495 (574)
T ss_pred cchhhchHHHHHHHHHhCC----CCeEEEEEcchhhhcc-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCCce
Confidence 4899999999999999975 8899999999999985 344 9999999999988877775 65321 10
Q ss_pred cCc--cCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 212 SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 212 ~~~--~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
... ...+|+.++|++||+++.+|+ +++++.+++++|++. .++|+|||+++.+..
T Consensus 496 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~~p~lIev~i~~~~ 551 (574)
T PRK06466 496 SHSYMESLPDFVKLAEAYGHVGIRIT--DLKDLKPKLEEAFAM---KDRLVFIDIYVDRSE 551 (574)
T ss_pred eecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCCcc
Confidence 111 134689999999999999996 788999999988752 278999999998644
No 97
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.67 E-value=3.7e-16 Score=154.47 Aligned_cols=121 Identities=21% Similarity=0.299 Sum_probs=96.7
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc------c----
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST------P---- 210 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~------~---- 210 (276)
.|+||+++|.|+|+++|.+ +++|+|++|||+|++. ..| |.||.+++||+++||.||+ |++.. .
T Consensus 429 ~g~mG~~lpaaiGa~la~p----~~~Vv~i~GDG~f~m~-~~e-L~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~ 502 (579)
T TIGR03457 429 FGNCGYAFPTIIGAKIAAP----DRPVVAYAGDGAWGMS-MNE-IMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRF 502 (579)
T ss_pred cccccchHHHHHhhhhhCC----CCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcc
Confidence 4899999999999999965 7899999999999985 344 9999999999888777665 65421 0
Q ss_pred ccCccCC-cchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 211 ISDQFRS-DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 211 ~~~~~~~-~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
....... .|+.++|++||.++.+|+ +++++.+++++|++.. +.++|+|||+.+.+..+
T Consensus 503 ~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~el~~al~~a~~~~-~~~~p~lieV~v~~~~~ 561 (579)
T TIGR03457 503 VGTELESELSFAGIADAMGAKGVVVD--KPEDVGPALKKAIAAQ-AEGKTTVIEIVCTRELG 561 (579)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhC-CCCCcEEEEEEeCCCcC
Confidence 0011222 599999999999999996 7889999999998643 24689999999987664
No 98
>PRK08617 acetolactate synthase; Reviewed
Probab=99.67 E-value=3.4e-16 Score=153.91 Aligned_cols=118 Identities=19% Similarity=0.260 Sum_probs=94.8
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-cccccc-----cc---
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP-----IS--- 212 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~-----~~--- 212 (276)
.|+||+++|.|+|+++|.+ +++|+|++|||+|++. ..| |.||+++++|+++||.||+ |++... ..
T Consensus 413 ~g~mG~~lpaaiGa~la~p----~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~~~~ 486 (552)
T PRK08617 413 MQTLGVALPWAIAAALVRP----GKKVVSVSGDGGFLFS-AME-LETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYGRSS 486 (552)
T ss_pred cccccccccHHHhhHhhcC----CCcEEEEEechHHhhh-HHH-HHHHHHhCCCeEEEEEECCccchHHHHHHhhcCCcc
Confidence 5799999999999999864 7899999999999985 344 9999999999987777665 553210 00
Q ss_pred -CccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 213 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 213 -~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
......|++++|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+...
T Consensus 487 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~liev~~~~~~~ 540 (552)
T PRK08617 487 GVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREALA----TDGPVVIDIPVDYSDN 540 (552)
T ss_pred cCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCcEEEEEEeccccc
Confidence 01134789999999999999986 78899999988875 4789999999987654
No 99
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.67 E-value=3.5e-16 Score=154.42 Aligned_cols=117 Identities=27% Similarity=0.369 Sum_probs=94.1
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc---------cc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST---------PI 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~---------~~ 211 (276)
.|+||+++|.|+|+++|.+ +++||+++|||+|++. ++| |.+|.++++|+++||.||+ |++.. ..
T Consensus 423 ~g~mG~glpaAiGaala~p----~~~vv~i~GDGsf~m~-~~e-L~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~~~ 496 (571)
T PRK07710 423 LGTMGFGLPAAIGAQLAKP----DETVVAIVGDGGFQMT-LQE-LSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQRY 496 (571)
T ss_pred cccccchHHHHHHHHHhCC----CCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCCcc
Confidence 4899999999999999864 7899999999999984 555 9999999999877777665 55421 00
Q ss_pred --cCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 212 --SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 212 --~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
.......|++++|++||+++.+|+ +.+++.+++++|.+ .++|+|||+.+.+..
T Consensus 497 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~vd~~~ 551 (571)
T PRK07710 497 SHSLLSCQPDFVKLAEAYGIKGVRID--DELEAKEQLQHAIE----LQEPVVIDCRVLQSE 551 (571)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecCcc
Confidence 111134789999999999999997 57788888888775 579999999998654
No 100
>PRK08322 acetolactate synthase; Reviewed
Probab=99.67 E-value=4e-16 Score=153.18 Aligned_cols=118 Identities=19% Similarity=0.257 Sum_probs=94.9
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc---------cc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST---------PI 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~---------~~ 211 (276)
.|+||+++|.|+|+++|.+ +++|++++|||+|++. ..| |.+|.++++|+++||.||+ |++.. ..
T Consensus 405 ~g~mG~~lpaaiGa~la~p----~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~~~~~ 478 (547)
T PRK08322 405 LATMGAGLPSAIAAKLVHP----DRKVLAVCGDGGFMMN-SQE-LETAVRLGLPLVVLILNDNAYGMIRWKQENMGFEDF 478 (547)
T ss_pred cccccchhHHHHHHHHhCC----CCcEEEEEcchhHhcc-HHH-HHHHHHhCCCeEEEEEeCCCcchHHHHHHhhcCCcc
Confidence 5799999999999999864 7899999999999975 344 9999999999877776664 65421 00
Q ss_pred cCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 212 SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 212 ~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
......+|++++|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+-..
T Consensus 479 ~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~v~~~~~ 532 (547)
T PRK08322 479 GLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEALA----QPGVHVIDCPVDYSEN 532 (547)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCccC
Confidence 111234789999999999999996 68899999998875 4799999999987554
No 101
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.67 E-value=3.7e-16 Score=154.43 Aligned_cols=119 Identities=27% Similarity=0.327 Sum_probs=95.1
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc---------cc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST---------PI 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~---------~~ 211 (276)
.|+||+++|.|+|+++|.+ +++|||++|||+|++. .++|++|+++++|+++||.||+ |++.. ..
T Consensus 436 ~gsmG~~l~~aiGa~la~~----~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~~ 509 (578)
T PRK06112 436 LAGLGWGVPMAIGAKVARP----GAPVICLVGDGGFAHV--WAELETARRMGVPVTIVVLNNGILGFQKHAETVKFGTHT 509 (578)
T ss_pred ccccccHHHHHHHHHhhCC----CCcEEEEEcchHHHhH--HHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccCCcc
Confidence 4799999999999998864 7899999999999864 4669999999999999988886 33211 00
Q ss_pred -cCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 023827 212 -SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIF 272 (276)
Q Consensus 212 -~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~ 272 (276)
.......|+.++|++||+++.+|+ +++++.++++++.+ .++|+|||+++.+....
T Consensus 510 ~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~~~~p 565 (578)
T PRK06112 510 DACHFAAVDHAAIARACGCDGVRVE--DPAELAQALAAAMA----APGPTLIEVITDPSAFP 565 (578)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEcCcccCC
Confidence 011135789999999999999997 67898888888875 57999999999876544
No 102
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.67 E-value=5.9e-16 Score=152.61 Aligned_cols=117 Identities=20% Similarity=0.262 Sum_probs=95.7
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-cccccc----------
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP---------- 210 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~---------- 210 (276)
.|+||+++|.|+|+++|.+ +++|+|++|||+|++. ++| |.+|.++++|+++||.||+ |++...
T Consensus 418 ~g~mG~~lpaaiGa~la~~----~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~~~~~ 491 (564)
T PRK08155 418 LGTMGFGLPAAIGAALANP----ERKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEALGLVHQQQSLFYGQRV 491 (564)
T ss_pred cccccchhHHHHHHHHhCC----CCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcccccHHHHHHhcCCCe
Confidence 4799999999999999975 7899999999999985 566 9999999999988888886 665321
Q ss_pred ccCcc-CCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 211 ISDQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 211 ~~~~~-~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
..... ...|++++|++||+++++|+ +++++.++++++++ .++|+|||+.+.+..
T Consensus 492 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~~~~~~ 546 (564)
T PRK08155 492 FAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAIN----RPGPALIHVRIDAEE 546 (564)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCCCc
Confidence 00111 34789999999999999997 67889888888875 478999999997644
No 103
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.66 E-value=5.5e-16 Score=152.51 Aligned_cols=116 Identities=18% Similarity=0.128 Sum_probs=93.8
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-cccc------c--ccc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIS------T--PIS 212 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~------~--~~~ 212 (276)
.|+||+++|.|+|+++|. +++||+++|||+|++. ..| |.||+++++|+++||.||+ |... . +..
T Consensus 416 ~gsmG~~lpaaiGaala~-----~~~vv~i~GDGsf~m~-~~E-L~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~ 488 (554)
T TIGR03254 416 WGVMGIGMGYAIAAAVET-----GKPVVALEGDSAFGFS-GME-VETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPAP 488 (554)
T ss_pred CCcCCchHHHHHHHHhcC-----CCcEEEEEcCchhccc-HHH-HHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCCCc
Confidence 589999999999999972 6889999999999985 345 9999999999999988886 3111 0 001
Q ss_pred Cc-cCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 213 DQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 213 ~~-~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
.. .+.+|+++++++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+..
T Consensus 489 ~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~id~~~ 541 (554)
T TIGR03254 489 TVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEALA----SGKPTLINAVIDPSA 541 (554)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEECCCc
Confidence 11 145789999999999999996 78899999998875 478999999998643
No 104
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.66 E-value=5.4e-16 Score=152.44 Aligned_cols=119 Identities=16% Similarity=0.276 Sum_probs=94.7
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc--------cc-
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST--------PI- 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~--------~~- 211 (276)
.|+||+++|.|+|+++|.+ ++++|+|++|||+|++. . .+|.+|++++||+++||.||+ |++.. +.
T Consensus 395 ~g~mG~glpaaiGa~la~p---~~~~Vv~i~GDGsf~~~-~-~eL~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~~~ 469 (549)
T PRK06457 395 LGSMGIGVPGSVGASFAVE---NKRQVISFVGDGGFTMT-M-MELITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGYPEW 469 (549)
T ss_pred cchhhhhHHHHHHHHhcCC---CCCeEEEEEcccHHhhh-H-HHHHHHHHHCCCeEEEEEECCccchHHHHHHHhcCCcc
Confidence 6899999999999999862 16899999999999885 3 449999999999877776665 65321 00
Q ss_pred cCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 212 SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 212 ~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
......+|+.++|++||+++.+|+ +++++..+++++++ .++|+|||+++.+...
T Consensus 470 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~~~~ 523 (549)
T PRK06457 470 GVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFLN----TKGPAVLDAIVDPNER 523 (549)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCcccc
Confidence 111234689999999999999997 78899999998875 4789999999986543
No 105
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.66 E-value=2.2e-16 Score=154.81 Aligned_cols=116 Identities=20% Similarity=0.184 Sum_probs=93.0
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-cccccc------ccCc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP------ISDQ 214 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~------~~~~ 214 (276)
.|+||+++|.|+|+++|.+ +++|+|++|||+|++. . .+|.||+++++|+++||.||+ |++... ....
T Consensus 403 ~g~mG~glpaaiGa~la~p----~~~vv~i~GDG~f~m~-~-~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~ 476 (539)
T TIGR03393 403 WGSIGYTLPAAFGAQTACP----NRRVILLIGDGSAQLT-I-QELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYND 476 (539)
T ss_pred hhhhhhHHHHHHHHHhcCC----CCCeEEEEcCcHHHhH-H-HHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcCc
Confidence 5899999999999999865 8899999999999985 3 449999999999877776665 654211 1112
Q ss_pred cCCcchhhhHhhcCce----EEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 023827 215 FRSDGAVVKGRAYGVR----SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSF 269 (276)
Q Consensus 215 ~~~~~~~~~a~a~G~~----~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 269 (276)
...+|+++++++||++ +.+|+ +.+++.++++++++ .++|+|||+.+.+-
T Consensus 477 ~~~~df~~la~a~G~~~~~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i~~~ 529 (539)
T TIGR03393 477 IALWNWTHLPQALSLDPQSECWRVS--EAEQLADVLEKVAA----HERLSLIEVVLPKA 529 (539)
T ss_pred CCCCCHHHHHHHcCCCCccceEEec--cHHHHHHHHHHHhc----cCCeEEEEEEcCcc
Confidence 3457999999999985 78886 68899999988875 47899999998653
No 106
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.66 E-value=2.5e-16 Score=156.74 Aligned_cols=118 Identities=21% Similarity=0.241 Sum_probs=95.4
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc---------c
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST---------P 210 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~---------~ 210 (276)
..|+||+++|.|+|+++|.+ +++|||++|||+|++. ..| |.||++|+||+++||.||+ |++.. .
T Consensus 432 ~~g~mG~glpaAiGA~lA~p----~r~Vv~i~GDG~f~m~-~~e-L~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~~ 505 (616)
T PRK07418 432 GLGTMGFGMPAAMGVKVALP----DEEVICIAGDASFLMN-IQE-LGTLAQYGINVKTVIINNGWQGMVRQWQESFYGER 505 (616)
T ss_pred CccccccHHHHHHHHHHhCC----CCcEEEEEcchHhhhh-HHH-HHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCC
Confidence 35899999999999999975 8899999999999975 444 9999999999988888886 44311 0
Q ss_pred c-cCcc--CCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 211 I-SDQF--RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 211 ~-~~~~--~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
. .... ...|++++|++||+++++|+ +++++.+++++|++ .++|+|||+++.+..
T Consensus 506 ~~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~el~~al~~a~~----~~~p~lIeV~i~~~~ 562 (616)
T PRK07418 506 YSASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQLKDAIAEALA----HDGPVLIDVHVRRDE 562 (616)
T ss_pred ceeecCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCcc
Confidence 0 0011 24789999999999999997 78899999988875 478999999997644
No 107
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.66 E-value=4.7e-16 Score=153.12 Aligned_cols=117 Identities=21% Similarity=0.313 Sum_probs=94.6
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCc-cccc---------c-
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AIST---------P- 210 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~-~~~~---------~- 210 (276)
.|+||+++|.|+|+++|.+ +++|+|++|||+|++. +.| |.+|.++++|+++||.||+. ++.. .
T Consensus 411 ~g~mG~~l~aaiGa~la~~----~~~vv~~~GDG~f~~~-~~e-L~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~~~~ 484 (558)
T TIGR00118 411 LGTMGFGLPAAIGAKVAKP----ESTVICITGDGSFQMN-LQE-LSTAVQYDIPVKILILNNRYLGMVRQWQELFYEERY 484 (558)
T ss_pred cccccchhhHHHhhhhhCC----CCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCce
Confidence 4799999999999999864 7899999999999984 454 99999999999999988874 3211 0
Q ss_pred cc-CccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 211 IS-DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 211 ~~-~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
.. ...+.+|+.+++++||+++++|+ +++++.++++++++ .++|+|||+++.+-.
T Consensus 485 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~~~~~~ 539 (558)
T TIGR00118 485 SHTHMGSLPDFVKLAEAYGIKGIRIE--KPEELDEKLKEALS----SNEPVLLDVVVDKPE 539 (558)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCCcc
Confidence 01 11124789999999999999997 57899999988876 379999999998644
No 108
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.66 E-value=6.3e-16 Score=153.03 Aligned_cols=118 Identities=22% Similarity=0.295 Sum_probs=94.7
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc---------c
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST---------P 210 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~---------~ 210 (276)
..|+||+++|.|+|+++|.+ +++|+|++|||+|++. .. +|.||++|++|+++||.||+ |++.. .
T Consensus 428 ~~g~mG~glpaaiGaala~p----~~~vv~i~GDG~f~m~-~~-eL~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~~~~ 501 (585)
T CHL00099 428 GLGTMGYGLPAAIGAQIAHP----NELVICISGDASFQMN-LQ-ELGTIAQYNLPIKIIIINNKWQGMVRQWQQAFYGER 501 (585)
T ss_pred cccchhhhHHHHHHHHHhCC----CCeEEEEEcchhhhhh-HH-HHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCC
Confidence 35899999999999999975 7899999999999875 34 49999999999988888887 33210 0
Q ss_pred ccC---ccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 211 ISD---QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 211 ~~~---~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
... ....+|+.+++++||+++.+|+ +++++.+++++|++ .++|.|||+++.+..
T Consensus 502 ~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~v~~~~ 558 (585)
T CHL00099 502 YSHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKDLKSSLKEALD----YDGPVLIDCQVIEDE 558 (585)
T ss_pred cccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEECCCc
Confidence 000 1124689999999999999997 68899888888875 579999999998543
No 109
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.65 E-value=8e-16 Score=151.58 Aligned_cols=117 Identities=25% Similarity=0.323 Sum_probs=94.5
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc---------cc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST---------PI 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~---------~~ 211 (276)
.|+||+++|.|+|+++|.+ +++|+|++|||+|++. ..| |.+|.++++|+++||.||+ |++.. +.
T Consensus 413 ~g~mG~glpaaiGa~la~p----~~~Vv~i~GDG~f~m~-~~e-L~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~~~~ 486 (561)
T PRK06048 413 LGTMGYGFPAAIGAKVGKP----DKTVIDIAGDGSFQMN-SQE-LATAVQNDIPVIVAILNNGYLGMVRQWQELFYDKRY 486 (561)
T ss_pred ccccccHHHHHHHHHHhCC----CCcEEEEEeCchhhcc-HHH-HHHHHHcCCCeEEEEEECCccHHHHHHHHHHcCCcc
Confidence 4799999999999999864 7899999999999986 344 9999999999888877775 54321 11
Q ss_pred cCc--cCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 212 SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 212 ~~~--~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
... .+..|+.+++++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+..
T Consensus 487 ~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el~~al~~a~~----~~~p~liev~~~~~~ 541 (561)
T PRK06048 487 SHTCIKGSVDFVKLAEAYGALGLRVE--KPSEVRPAIEEAVA----SDRPVVIDFIVECEE 541 (561)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecCcc
Confidence 111 135789999999999999997 67899999999875 479999999997644
No 110
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.65 E-value=8.8e-16 Score=150.88 Aligned_cols=118 Identities=19% Similarity=0.248 Sum_probs=95.0
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc---------cc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST---------PI 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~---------~~ 211 (276)
.|+||+++|.|+|+++|.+ +++|+|++|||+|++. ..| |.+|.++++|+++||.||+ |++.. +.
T Consensus 400 ~g~mG~glpaAiGa~la~p----~~~vv~i~GDG~f~~~-~~e-L~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~~~~~ 473 (548)
T PRK08978 400 LGTMGFGLPAAIGAQVARP----DDTVICVSGDGSFMMN-VQE-LGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDERY 473 (548)
T ss_pred hhhhhchHHHHHHHHHhCC----CCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 4899999999999999964 7899999999999885 344 9999999999888777665 55321 00
Q ss_pred c-Ccc-CCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 212 S-DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 212 ~-~~~-~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
. ... ..+|+++++++||+++.+|+ +++++.++++++++ .++|+|||+.+.+...
T Consensus 474 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~id~~~~ 529 (548)
T PRK08978 474 SETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDTLLN----SEGPYLLHVSIDELEN 529 (548)
T ss_pred eecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecCccc
Confidence 1 111 34789999999999999996 78899999988875 4799999999987654
No 111
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.65 E-value=9.4e-16 Score=151.40 Aligned_cols=117 Identities=25% Similarity=0.256 Sum_probs=95.1
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-cccccc---------c
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP---------I 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~---------~ 211 (276)
.|+||+++|.|+|+++|.+ +++||+++|||+|++.. .| |.||.+++||+++||.||+ |++... .
T Consensus 420 ~g~mG~glpaAiGa~la~p----~~~vv~i~GDG~f~m~~-~e-L~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~~~ 493 (572)
T PRK06456 420 MGTMGFGLPAAMGAKLARP----DKVVVDLDGDGSFLMTG-TN-LATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGKRI 493 (572)
T ss_pred cccccchhHHHHHHHHhCC----CCeEEEEEccchHhcch-HH-HHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCCCc
Confidence 5899999999999999975 78999999999998863 44 9999999999888887776 654210 0
Q ss_pred -cCcc-CCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 212 -SDQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 212 -~~~~-~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
.... +..|++++|++||+++.+|+ +++++.+++++|.+ .++|+|||+.+.+..
T Consensus 494 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~v~~~~ 548 (572)
T PRK06456 494 VGVDYGPSPDFVKLAEAFGALGFNVT--TYEDIEKSLKSAIK----EDIPAVIRVPVDKEE 548 (572)
T ss_pred ccccCCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCccc
Confidence 0011 34789999999999999986 78899999988875 479999999998754
No 112
>PLN02470 acetolactate synthase
Probab=99.65 E-value=1.2e-15 Score=150.97 Aligned_cols=117 Identities=21% Similarity=0.204 Sum_probs=93.9
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc---------cc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST---------PI 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~---------~~ 211 (276)
.|+||+++|.|+|+++|.+ +++|+|++|||+|++.. . +|.||.+++||+++||.||+ |++.. +.
T Consensus 425 ~g~mG~glpaaiGa~la~p----~~~Vv~i~GDG~f~m~~-~-eL~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~~~~~ 498 (585)
T PLN02470 425 LGAMGFGLPAAIGAAAANP----DAIVVDIDGDGSFIMNI-Q-ELATIHVENLPVKIMVLNNQHLGMVVQWEDRFYKANR 498 (585)
T ss_pred cccccchHHHHHHHHHhCC----CCcEEEEEccchhhccH-H-HHHHHHHhCCCeEEEEEeCCcchHHHHHHHHHhCCce
Confidence 5899999999999999975 78999999999999863 4 49999999999888777775 54311 00
Q ss_pred cCc-c--------CCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 212 SDQ-F--------RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 212 ~~~-~--------~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
... . ..+|++++|++||+++.+|+ +++++.++++++.+ .++|+|||+.+.+..
T Consensus 499 ~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~i~~~~ 560 (585)
T PLN02470 499 AHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT--RKSDLREAIQKMLD----TPGPYLLDVIVPHQE 560 (585)
T ss_pred eeeecCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCCcc
Confidence 000 0 12689999999999999996 68899999998875 478999999998654
No 113
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.64 E-value=1.4e-15 Score=150.76 Aligned_cols=122 Identities=20% Similarity=0.255 Sum_probs=96.9
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeC-Cccccc---------c
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIST---------P 210 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~---------~ 210 (276)
..|+||+++|.|+|+++|.+ +++||+++|||+|+++ ..| |.+|+++++|+++||.|| +|++.. .
T Consensus 433 ~~g~mG~glp~aiGa~la~p----~r~vv~i~GDG~f~~~-~~e-l~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~ 506 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIACP----DRPVVGFAGDGAWGIS-MNE-VMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNR 506 (588)
T ss_pred cccccccHHHHHHHHHHhCC----CCcEEEEEcCchHhcc-HHH-HHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCC
Confidence 35899999999999999865 7899999999999986 455 999999999988888666 565421 0
Q ss_pred ccC-cc-CCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 211 ISD-QF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 211 ~~~-~~-~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
... .. +..|+.+++++||+++.+|+ +++++.++++++++.. +.++|+|||+.+.+-.|
T Consensus 507 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~-~~~~p~lIev~~~~~~~ 566 (588)
T PRK07525 507 FVGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQ-NEGKTTVIEIMCNQELG 566 (588)
T ss_pred cccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcC-CCCCcEEEEEEeccccC
Confidence 000 11 23699999999999999996 7889999999988743 23589999999986553
No 114
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.64 E-value=1.1e-15 Score=137.70 Aligned_cols=117 Identities=17% Similarity=0.116 Sum_probs=89.2
Q ss_pred cccccccchhhhHHHHhhhcCCCceEEEEECCCcCCc-chHHHHHHHHHHCCCCEEEEEEeCC-ccccc-------ccc-
Q 023827 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE-GDFHAALNFSAVTEAPVIFICRNNG-WAIST-------PIS- 212 (276)
Q Consensus 143 g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~-G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~-------~~~- 212 (276)
+++|.++|.|+|+++|.+ ++.||++.|||++.+ |. .| +.+|+++++|+++||.||+ |++.. +..
T Consensus 68 ~~~G~alPaAiGaklA~P----dr~VV~i~GDG~f~~~g~-~e-l~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~ 141 (277)
T PRK09628 68 TTHGRAVAYATGIKLANP----DKHVIVVSGDGDGLAIGG-NH-TIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGM 141 (277)
T ss_pred eccccHHHHHHHHHHHCC----CCeEEEEECchHHHHhhH-HH-HHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCc
Confidence 488999999999999975 899999999999953 42 33 7779999999998888886 45422 100
Q ss_pred --------CccCCcchhhhHhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 023827 213 --------DQFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSF 269 (276)
Q Consensus 213 --------~~~~~~~~~~~a~a~G~~~~-~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 269 (276)
...+..|++++|++||++++ +..-.+++++.+++++|++ .++|+|||+.+.--
T Consensus 142 ~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al~~Al~----~~Gp~lIeV~~~c~ 203 (277)
T PRK09628 142 WTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQKLEKLLVKGFS----HKGFSFFDVFSNCH 203 (277)
T ss_pred eeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHHHHHHHHHHHHh----CCCCEEEEEcCCCC
Confidence 00123477999999999975 2333488999999999986 47999999987544
No 115
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.64 E-value=7e-16 Score=151.23 Aligned_cols=117 Identities=20% Similarity=0.164 Sum_probs=92.3
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccccc-----cCcc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-----SDQF 215 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~-----~~~~ 215 (276)
.|+||+++|.|+|+++|. ++++|+++|||+|++. .+| |.||+++++|+++||.||+ |++.... ....
T Consensus 402 ~g~mG~glpaaiGa~lA~-----~~r~v~i~GDG~f~m~-~~E-L~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~~~~ 474 (535)
T TIGR03394 402 YAGMGFGVPAGIGAQCTS-----GKRILTLVGDGAFQMT-GWE-LGNCRRLGIDPIVILFNNASWEMLRVFQPESAFNDL 474 (535)
T ss_pred cchhhhHHHHHHHHHhCC-----CCCeEEEEeChHHHhH-HHH-HHHHHHcCCCcEEEEEECCccceeehhccCCCcccC
Confidence 589999999999999995 2456889999999985 445 9999999999877777665 6643211 1123
Q ss_pred CCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 216 RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 216 ~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
...|+++++++||.++.+|+ +++++.+++++|.+. .++|+|||+++.+..
T Consensus 475 ~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lIev~i~~~~ 524 (535)
T TIGR03394 475 DDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFAT---RGRFQLIEAMLPRGV 524 (535)
T ss_pred CCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHhc---CCCeEEEEEECCccc
Confidence 45799999999999999997 688999999988752 356899999987643
No 116
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.63 E-value=2.1e-15 Score=148.90 Aligned_cols=116 Identities=18% Similarity=0.104 Sum_probs=94.0
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-c--ccc----c--c-c
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-W--AIS----T--P-I 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~--~~~----~--~-~ 211 (276)
.|+||+++|.|+|+++| + +++|||++|||+|++. ..| |.||+++++|+++||.||+ | ... . . .
T Consensus 423 ~gsmG~glpaaiGa~la-~----~~~vv~i~GDG~f~m~-~~E-L~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~~ 495 (569)
T PRK09259 423 WGVMGIGMGYAIAAAVE-T----GKPVVAIEGDSAFGFS-GME-VETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGDPS 495 (569)
T ss_pred CccccccHHHHHHHHhc-C----CCcEEEEecCcccccc-HHH-HHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCCcc
Confidence 58999999999999998 2 6889999999999985 445 9999999999999998887 3 110 0 0 0
Q ss_pred cCc-cCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 212 SDQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 212 ~~~-~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
... .+.+|++++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+-.
T Consensus 496 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~id~~~ 549 (569)
T PRK09259 496 PTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAIA----SGKPTLINVVIDPAA 549 (569)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEECCCC
Confidence 011 135789999999999999996 68899999998875 478999999998544
No 117
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.62 E-value=1.7e-15 Score=149.51 Aligned_cols=116 Identities=23% Similarity=0.352 Sum_probs=91.7
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc---------cc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST---------PI 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~---------~~ 211 (276)
.|+||+++|.|+|+++|.+ +++||+++|||+|++. ..| |.||.+|++|+++||.||+ |++.. ..
T Consensus 417 ~g~mG~glpaaiGa~lA~p----~~~Vv~i~GDG~f~m~-~~e-L~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~~~~~ 490 (566)
T PRK07282 417 LGTMGFGIPAAIGAKIANP----DKEVILFVGDGGFQMT-NQE-LAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEGRT 490 (566)
T ss_pred cccccchhhHhheeheecC----CCcEEEEEcchhhhcc-HHH-HHHHHHhCCCeEEEEEeCCCchHHHHHHHHHhCCCc
Confidence 5899999999999999965 8899999999999985 344 9999999999877777665 65421 11
Q ss_pred c-Ccc-CCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 212 S-DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 212 ~-~~~-~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
. ... ..+|++++|++||+++.+|+ ++.++.++++ +.. .++|+|||+.+.+..
T Consensus 491 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~-~~~----~~~p~lIeV~v~~~~ 544 (566)
T PRK07282 491 SESVFDTLPDFQLMAQAYGIKHYKFD--NPETLAQDLE-VIT----EDVPMLIEVDISRKE 544 (566)
T ss_pred ccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHH-Hhc----CCCCEEEEEEeCCcc
Confidence 1 112 34789999999999999997 6788888885 332 479999999998754
No 118
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.62 E-value=2.9e-15 Score=148.41 Aligned_cols=116 Identities=26% Similarity=0.329 Sum_probs=93.6
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc---------cc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST---------PI 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~---------~~ 211 (276)
.|+||+++|.|+|+++|.+ +++|||++|||+|++. ..| |.+|+++++|+++||.||+ |++.. +.
T Consensus 418 ~gsmG~~lpaaiGa~la~p----~~~Vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~~~~ 491 (586)
T PRK06276 418 LGTMGFGFPAAIGAKVAKP----DANVIAITGDGGFLMN-SQE-LATIAEYDIPVVICIFDNRTLGMVYQWQNLYYGKRQ 491 (586)
T ss_pred ccccccchhHHHhhhhhcC----CCcEEEEEcchHhhcc-HHH-HHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhCCCc
Confidence 4799999999999999864 7899999999999986 344 9999999999988887776 55321 01
Q ss_pred cCc-c-CCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 023827 212 SDQ-F-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSF 269 (276)
Q Consensus 212 ~~~-~-~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 269 (276)
... . ...|+++++++||+++.+|+ +++++.++++++++ .++|+|||+.+.+.
T Consensus 492 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~~ 545 (586)
T PRK06276 492 SEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAIK----SGEPYLLDIIIDPA 545 (586)
T ss_pred ccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeccc
Confidence 111 1 34789999999999999996 78899999988875 47899999999753
No 119
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.62 E-value=1.3e-15 Score=134.69 Aligned_cols=122 Identities=18% Similarity=0.168 Sum_probs=91.0
Q ss_pred cccccccccchhhhHHHHhh-hcCCCceEEEEECCCcCC-cchHHHHHHHHHHCCCCEEEEEEeCC-cccccccc-----
Q 023827 141 VSSTIATQLPHAVGAAYALK-MDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS----- 212 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k-~~~~~~~vv~~~GDG~~~-~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~----- 212 (276)
..|+||+++|.|+|++++.- ...++++|||+.|||++. +| +.+ +.++.++++|+++||.||+ |++.....
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g-~~~-l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~ 139 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG-FGA-LSHSLFRGEDITVIVLDNEVYSNTGGQRSGATP 139 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc-HHH-HHHHHHcCCCeEEEEECCccccCCCCCCCCCCc
Confidence 34899999999999998811 012478999999999985 44 444 7788899999999888886 44321010
Q ss_pred -----------CccCCcchhhhHhhcCceEEE-EcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEe
Q 023827 213 -----------DQFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEVKCL 267 (276)
Q Consensus 213 -----------~~~~~~~~~~~a~a~G~~~~~-vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~ 267 (276)
......|++++|++||+++++ +.-.++.++.+++++|++ +.++|+||++.+.
T Consensus 140 ~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~---~~~GP~lI~v~i~ 203 (237)
T cd02018 140 LGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAIS---RTDGPTFIHAYTP 203 (237)
T ss_pred CCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHh---cCCCCEEEEEeCC
Confidence 112347899999999999985 222468899999998885 1478999999864
No 120
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.61 E-value=2.5e-15 Score=149.50 Aligned_cols=118 Identities=23% Similarity=0.310 Sum_probs=94.0
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc---------cc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST---------PI 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~---------~~ 211 (276)
.|+||+++|.|+|+++|.+ +++|+|++|||+|++.. .+|.||++++||+++||.||+ |++.. ..
T Consensus 446 ~G~mG~glpaaiGa~la~p----~~~Vv~i~GDG~f~m~~--~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~ 519 (612)
T PRK07789 446 LGTMGYAVPAAMGAKVGRP----DKEVWAIDGDGCFQMTN--QELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERY 519 (612)
T ss_pred cccccchhhhHHhhhccCC----CCcEEEEEcchhhhccH--HHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCCc
Confidence 4799999999999999965 78999999999998753 459999999999887777765 65321 00
Q ss_pred cC-cc-----CCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 212 SD-QF-----RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 212 ~~-~~-----~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
.. .. ..+|++++|++||+++.+|+ +++++.+++++|++. .++|+|||+.+.+..
T Consensus 520 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~---~~~p~lIev~i~~~~ 579 (612)
T PRK07789 520 SNTDLHTHSHRIPDFVKLAEAYGCVGLRCE--REEDVDAVIEKARAI---NDRPVVIDFVVGKDA 579 (612)
T ss_pred ceeecCcCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEECCcc
Confidence 00 01 12689999999999999996 788999999998863 368999999998643
No 121
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.61 E-value=1.5e-14 Score=130.92 Aligned_cols=114 Identities=17% Similarity=0.137 Sum_probs=88.7
Q ss_pred cccccccchhhhHHHHhhhcCCCceEEEEECCCc-CCcchHHHHHHHHHHCCCCEEEEEEeCC-cccccccc--------
Q 023827 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGG-TSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 212 (276)
Q Consensus 143 g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~-~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~-------- 212 (276)
++||.++|+|+|+++|.+ +++||++.|||+ |++|. .| |.+|+++++|+++||.||+ |++.....
T Consensus 69 g~mG~alpaAiGaklA~P----d~~VV~i~GDG~~f~mg~-~e-L~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~ 142 (286)
T PRK11867 69 TIHGRALAIATGLKLANP----DLTVIVVTGDGDALAIGG-NH-FIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGF 142 (286)
T ss_pred hhhhcHHHHHHHHHHhCC----CCcEEEEeCccHHHhCCH-HH-HHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCc
Confidence 789999999999999865 899999999995 78764 33 9999999999988888776 54421110
Q ss_pred --------CccCCcchhhhHhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 213 --------DQFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 213 --------~~~~~~~~~~~a~a~G~~~~-~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
......++.+++.++|...+ ++...++.++.+++++|++ .++|+|||+.+
T Consensus 143 ~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~----~~Gp~lIev~~ 201 (286)
T PRK11867 143 VTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAIN----HKGFSFVEILQ 201 (286)
T ss_pred ccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 00112578899999999876 3344578999999999886 47999999875
No 122
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.60 E-value=4.7e-15 Score=134.91 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=89.6
Q ss_pred cccccccchhhhHHHHhhhcCCCceEEEEECCCcC-CcchHHHHHHHHHHCCCCEEEEEEeCC-ccccccc----c----
Q 023827 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI----S---- 212 (276)
Q Consensus 143 g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~-~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~----~---- 212 (276)
+++|.++|+|+|+++|.+ +++|||+.|||++ ++|. . .|.+|+++++|+++||.||+ |++.... .
T Consensus 70 g~mG~alpaAiGaklA~p----d~~VV~i~GDG~~~~mg~-~-eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~ 143 (301)
T PRK05778 70 TLHGRAIAFATGAKLANP----DLEVIVVGGDGDLASIGG-G-HFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGS 143 (301)
T ss_pred hhhccHHHHHHHHHHHCC----CCcEEEEeCccHHHhccH-H-HHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCc
Confidence 789999999999999975 8899999999997 5653 3 49999999999999888886 4432211 0
Q ss_pred --------CccCCcchhhhHhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 213 --------DQFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 213 --------~~~~~~~~~~~a~a~G~~~~-~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
......|+.++|+++|+..+ ++...++.++.+++++|++ .++|+|||+.+
T Consensus 144 ~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~----~~GpalIeV~~ 202 (301)
T PRK05778 144 KTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS----HKGFAFIDVLS 202 (301)
T ss_pred ccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh----CCCCEEEEEcC
Confidence 01134689999999999886 3344689999999999886 47999999764
No 123
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.59 E-value=5.7e-15 Score=132.94 Aligned_cols=116 Identities=10% Similarity=0.046 Sum_probs=90.3
Q ss_pred cccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-cccc-------ccc---
Q 023827 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIS-------TPI--- 211 (276)
Q Consensus 143 g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~-------~~~--- 211 (276)
+.+|.++|.|+|+++|.+ ++.||++.|||++..-.+.| |.+|+++++|+++||.||+ |++. ++.
T Consensus 60 ~~mG~alp~AiGaklA~p----d~~VVai~GDG~~~~iG~~e-L~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~ 134 (280)
T PRK11869 60 TLHGRAIPAATAVKATNP----ELTVIAEGGDGDMYAEGGNH-LIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFK 134 (280)
T ss_pred cccccHHHHHHHHHHHCC----CCcEEEEECchHHhhCcHHH-HHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcc
Confidence 559999999999988864 88999999999996422344 9999999999999998886 4432 110
Q ss_pred ------cCccCCcchhhhHhhcCceEEEE-cCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEe
Q 023827 212 ------SDQFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEVKCL 267 (276)
Q Consensus 212 ------~~~~~~~~~~~~a~a~G~~~~~v-dg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~ 267 (276)
.......|+.++|+++|++.+.. +-.++.++.+++++|++ .++|+|||+.+.
T Consensus 135 ~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~----~~Gp~lIeV~~p 193 (280)
T PRK11869 135 TPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIK----HKGLAIVDIFQP 193 (280)
T ss_pred cccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHh----CCCCEEEEEECC
Confidence 11112358999999999998763 24589999999999997 479999998753
No 124
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.58 E-value=3.4e-15 Score=147.31 Aligned_cols=115 Identities=22% Similarity=0.127 Sum_probs=91.7
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-cccccc----c-----
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP----I----- 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~----~----- 211 (276)
.++||+++|.|+|+++| + +++|+|++|||+|++.. .| |.+|+++++|+++||.||+ |++... .
T Consensus 424 ~~~~G~~lpaaiGaala-~----~~~vv~i~GDGsf~~~~-~e-L~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~~ 496 (568)
T PRK07449 424 ASGIDGLLSTAAGVARA-S----AKPTVALIGDLSFLHDL-NG-LLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEEPVF 496 (568)
T ss_pred ccchhhHHHHHHHHHhc-C----CCCEEEEechHHhhcCc-HH-HHhhcccCCCeEEEEEECCCCccccCCCCCCCcchh
Confidence 46899999999999998 4 78899999999998753 44 9999999999888877776 553110 0
Q ss_pred ---cCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 023827 212 ---SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSF 269 (276)
Q Consensus 212 ---~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 269 (276)
.......|++++|++||+++.+|+ +++++.+++++|++ .++|+|||+++.+.
T Consensus 497 ~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~id~~ 551 (568)
T PRK07449 497 ERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADALP----TPGLTVIEVKTNRS 551 (568)
T ss_pred hHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHhc----CCCCEEEEEeCChh
Confidence 011235789999999999999986 78899999998874 47999999999764
No 125
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.57 E-value=1.8e-14 Score=129.69 Aligned_cols=115 Identities=21% Similarity=0.240 Sum_probs=90.3
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCC-cCCcchHHHHHHHHHHCCCCEEEEEEeCC-cccccccc-------
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS------- 212 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG-~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~------- 212 (276)
.+++|.++|+|+|+++|.+ +++||++.||| +|++|. ..|.+|+++++|+++||.||+ |++...+.
T Consensus 58 ~~~~G~alp~A~GaklA~P----d~~VV~i~GDG~~f~ig~--~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g 131 (279)
T PRK11866 58 HGIHGRVLPIATGVKWANP----KLTVIGYGGDGDGYGIGL--GHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRG 131 (279)
T ss_pred ccccccHHHHHHHHHHHCC----CCcEEEEECChHHHHccH--HHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCC
Confidence 5789999999999999965 78999999999 688874 349999999999999998886 44322110
Q ss_pred ---------CccCCcchhhhHhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 213 ---------DQFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 213 ---------~~~~~~~~~~~a~a~G~~~~-~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
......|+.++++++|++.+ +....++.++.+++++|++ .+||++||+..
T Consensus 132 ~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~----~~Gps~I~v~~ 191 (279)
T PRK11866 132 VKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIK----HKGFSFIDVLS 191 (279)
T ss_pred ceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 00011389999999999755 4455789999999999986 47999999865
No 126
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=99.53 E-value=6.8e-14 Score=132.45 Aligned_cols=166 Identities=21% Similarity=0.284 Sum_probs=117.8
Q ss_pred ChhHHHHHHHHhccCCCcEEEccCCcHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCC--ccccccccccc
Q 023827 71 SGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHN--YFTVSSTIATQ 148 (276)
Q Consensus 71 ~G~Ea~~~~~~~al~~~D~~~~~yR~~~~~~~~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~~~--~~~~~g~lG~~ 148 (276)
+-||-..-.+...|+++|+++.- .|- .+||- ... -+ ..... ..+-+|++|+.
T Consensus 363 Ltq~~~w~~~~~fl~p~dviiae---------tGt-------S~FG~-------~~~--~l-P~~~~~i~Q~lWGSIG~t 416 (557)
T COG3961 363 LTQEWLWNTVQNFLKPGDVIIAE---------TGT-------SFFGA-------LDI--RL-PKGATFISQPLWGSIGYT 416 (557)
T ss_pred ccHHHHHHHHHhhCCCCCEEEEc---------ccc-------ccccc-------eee--ec-CCCCeEEcccchhhcccc
Confidence 55777777788889999999873 111 13321 111 11 11112 23458999999
Q ss_pred cchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCC-CEEEEEEeCCccccccccC------ccCCcchh
Q 023827 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISD------QFRSDGAV 221 (276)
Q Consensus 149 l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~------~~~~~~~~ 221 (276)
+|.|.|+++|.+ +++++.|+|||++|+. ++| +.+..+|+| |+|||++|++|.+..-.+. ....+++.
T Consensus 417 ~pAalGa~~A~~----drR~IL~iGDGs~QlT-vQE-iStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~YNdI~~Wd~~ 490 (557)
T COG3961 417 LPAALGAALAAP----DRRVILFIGDGSLQLT-VQE-ISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPYNDIQSWDYT 490 (557)
T ss_pred cHhhhhhhhcCC----CccEEEEEcCchhhhh-HHH-HHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcCcccccccchh
Confidence 999999999987 8999999999999984 555 999999999 9999999999987543322 23457899
Q ss_pred hhHhhcCceEEEE--cCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 222 VKGRAYGVRSIRV--DGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 222 ~~a~a~G~~~~~v--dg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
++.++||..-... .-...+++..+++.+.+ ..+++.+|||++.+..=
T Consensus 491 ~l~~afg~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~i~lIEv~lp~~D~ 539 (557)
T COG3961 491 ALPEAFGAKNGEAKFRATTGEELALALDVAFA---NNDRIRLIEVMLPVLDA 539 (557)
T ss_pred hhhhhcCCCCceEEEeecChHHHHHHHHHHhc---CCCceEEEEEecCcccC
Confidence 9999998643322 22345566667766665 35689999999987653
No 127
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.53 E-value=4e-14 Score=127.92 Aligned_cols=114 Identities=13% Similarity=0.123 Sum_probs=85.6
Q ss_pred cccccccchhhhHHHHhhhcCCCceEEEEECCCcC-CcchHHHHHHHHHHCCCCEEEEEEeCC-ccccccccC-------
Q 023827 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------- 213 (276)
Q Consensus 143 g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~-~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~~------- 213 (276)
+.+|.++|+|+|+++|.+ ++.|||+.|||++ .+|. ..|.+|+++++|+++||.||+ |++......
T Consensus 53 t~mG~alPaAiGaklA~P----d~~VVai~GDG~f~~mg~--~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~ 126 (287)
T TIGR02177 53 GLHGRALPVATGIKLANP----HLKVIVVGGDGDLYGIGG--NHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGV 126 (287)
T ss_pred cccccHHHHHHHHHHHCC----CCcEEEEeCchHHHhccH--HHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCc
Confidence 568999999999999865 8999999999997 4663 349999999999999988886 443221110
Q ss_pred ---------cc--CCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEe
Q 023827 214 ---------QF--RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCL 267 (276)
Q Consensus 214 ---------~~--~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~ 267 (276)
.. ..+++.+++.++|+.+.... .++.++.+++++|++ .++|+|||+.+.
T Consensus 127 ~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~-~~~~eL~~ai~~Al~----~~GpslIeV~~p 186 (287)
T TIGR02177 127 KTKSLPYPNIQDPVNPLLLAIALGYTFVARGFS-GDVAHLKEIIKEAIN----HKGYALVDILQP 186 (287)
T ss_pred ceeecccCccCCCCCHHHHHHhCCCCeEEEEec-CCHHHHHHHHHHHHh----CCCCEEEEEeCC
Confidence 00 02346677888887766522 589999999999986 479999998753
No 128
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.52 E-value=9.8e-14 Score=137.67 Aligned_cols=119 Identities=16% Similarity=0.096 Sum_probs=91.9
Q ss_pred cccccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccccccC----
Q 023827 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD---- 213 (276)
Q Consensus 139 ~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~~---- 213 (276)
....++||+++|.|+|+++|.+ +++||+++|||+|.+....| |.+|.++++|+++||.||+ |++......
T Consensus 399 ~~~~~~mG~~~~~AiGa~~a~p----~~~Vv~i~GDG~f~~~g~~e-L~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~ 473 (595)
T TIGR03336 399 VDTTLCMGASIGVASGLSKAGE----KQRIVAFIGDSTFFHTGIPG-LINAVYNKANITVVILDNRITAMTGHQPNPGTG 473 (595)
T ss_pred cceeeccCchHHHHhhhhhcCC----CCCEEEEeccchhhhcCHHH-HHHHHHcCCCeEEEEEcCcceeccCCCCCCCCC
Confidence 3346899999999999999864 78999999999998643444 9999999999988887775 555331110
Q ss_pred ------ccCCcchhhhHhhcCceEEEEcC-CCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 214 ------QFRSDGAVVKGRAYGVRSIRVDG-NDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 214 ------~~~~~~~~~~a~a~G~~~~~vdg-~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
.....|+.++++++|++..+|.. .|.+++.++++++++ .++|++|+++.
T Consensus 474 ~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~----~~gp~li~v~~ 529 (595)
T TIGR03336 474 VTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALA----AEGVSVIIAKQ 529 (595)
T ss_pred CCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHh----cCCCEEEEEcc
Confidence 11246899999999999998864 455677888888875 47899999854
No 129
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.40 E-value=5.9e-13 Score=144.76 Aligned_cols=119 Identities=18% Similarity=0.092 Sum_probs=93.2
Q ss_pred cccccccc--ccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHC--CCCEEEEEEeCC-cccccc----
Q 023827 140 TVSSTIAT--QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--EAPVIFICRNNG-WAISTP---- 210 (276)
Q Consensus 140 ~~~g~lG~--~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~--~Lpvi~vv~nN~-~~~~~~---- 210 (276)
.+.|+||. ++|.|+|+++|. +++|+|++|||+|++. .. +|.+|+++ ++|+++||.||+ |++...
T Consensus 756 ~~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~m~-~~-EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~ 828 (1655)
T PLN02980 756 GNRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFLHD-TN-GLSILSQRIARKPMTILVINNHGGAIFSLLPIA 828 (1655)
T ss_pred ecCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHHhh-hh-HHHHhhcccCCCCEEEEEEeCCCcHhhhcCccC
Confidence 34689998 599999999884 6789999999999874 34 49999985 999988887776 443211
Q ss_pred ---c-------cCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 211 ---I-------SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 211 ---~-------~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
. .......|+.++|++||+++.+|+ +++++.++++++.+ .++|+|||+.|.|-..
T Consensus 829 ~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~~----~~~p~lIEV~t~~~~~ 893 (1655)
T PLN02980 829 KRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVG--TKSELEDALFTSQV----EQMDCVVEVESSIDAN 893 (1655)
T ss_pred CCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecC--CHHHHHHHHHHhhc----cCCCEEEEEecChhhh
Confidence 0 001124789999999999999997 68899999888775 5799999999987543
No 130
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=99.36 E-value=2.9e-12 Score=117.14 Aligned_cols=193 Identities=23% Similarity=0.254 Sum_probs=120.1
Q ss_pred ccccccCChhHHHHHHHHhccCC--CcEEEccCCcHHHHH--H----cC----------CC---HHHHHHHhhcCCCCCC
Q 023827 64 ISFYLTTSGEEAINIASAAAIKN--DDFVVPQYREPGVLL--W----RG----------FS---MQEFANQCFGNKADYG 122 (276)
Q Consensus 64 ~~~~~~~~G~Ea~~~~~~~al~~--~D~~~~~yR~~~~~~--~----~G----------~~---~~~~l~~~~~~~~~~~ 122 (276)
++.|-++.|+..+.+++...++. .|.++..-.||+... + -| .+ +..++.+| +
T Consensus 47 lGHWGt~PGlnfiyahlNrlI~~~~~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~F-------S 119 (379)
T PF09364_consen 47 LGHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFRQF-------S 119 (379)
T ss_dssp -S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHB-------T
T ss_pred ccccCCCccHHHHHHHHHHHHHhcCCceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHHhC-------C
Confidence 46788899999999999988875 467777767774321 1 11 11 23333333 2
Q ss_pred CCCCCccccCCCCCCccccccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCC----C-C--
Q 023827 123 KGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE----A-P-- 195 (276)
Q Consensus 123 ~G~~~~~h~~~~~~~~~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~----L-p-- 195 (276)
.-.++++|.....+|.+.-.|-||+.++.|.|+++-++ |.+|+|++|||++.+|. +|+.|. + |
T Consensus 120 ~PgGipSH~~p~tPGsIhEGGELGYaLshA~GA~~DnP----dliv~~vvGDGEaETGp------lA~sWh~~kflnP~~ 189 (379)
T PF09364_consen 120 FPGGIPSHVSPETPGSIHEGGELGYALSHAFGAVFDNP----DLIVACVVGDGEAETGP------LAASWHSNKFLNPAT 189 (379)
T ss_dssp STTSB-SSS-TTSTT-S---SSTS-HHHHHHHHHTT-T----T-EEEEEEETTGGGSHH------HHHHGGGGGSS-TTT
T ss_pred CCCCCccccCcCCCCccCcCcchhhHHHHHhhcccCCC----CeEEEEEecCCcccCCc------ccccccccceeCccc
Confidence 33568999987778888888999999999999998654 99999999999999986 444442 2 3
Q ss_pred ---EEEEEEeCCccccccccC-ccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHH----H-------HhHccC---
Q 023827 196 ---VIFICRNNGWAISTPISD-QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAR----E-------MAIGEG--- 257 (276)
Q Consensus 196 ---vi~vv~nN~~~~~~~~~~-~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~----~-------~~r~~~--- 257 (276)
|+-|+.=|+|.|+.|+-- .++...+.+.++++||..+.|+|.|+.++...+..++ + .+|+++
T Consensus 190 dGaVLPILhLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ald~a~~~I~~iq~~Ar~~~~~~ 269 (379)
T PF09364_consen 190 DGAVLPILHLNGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAALDWALEEIRAIQKAARSGNPAY 269 (379)
T ss_dssp S-EEEEEEEE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS-
T ss_pred CceeeceEEecCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 788888999999887642 2345679999999999999999999988877654443 2 233332
Q ss_pred CCE--EEEEEEecCCCCC
Q 023827 258 RPI--LIEVKCLSFSIFL 273 (276)
Q Consensus 258 ~P~--lIe~~t~R~~g~~ 273 (276)
+|. +|.++|.+.++-+
T Consensus 270 ~prwPmivlRtPKGWtgP 287 (379)
T PF09364_consen 270 RPRWPMIVLRTPKGWTGP 287 (379)
T ss_dssp ---EEEEEEE--TTTTS-
T ss_pred CCCCcEEEEECCcccCCc
Confidence 343 6888888877654
No 131
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.36 E-value=7.1e-12 Score=117.77 Aligned_cols=120 Identities=21% Similarity=0.237 Sum_probs=93.3
Q ss_pred ccccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeC-C-ccccc--------
Q 023827 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-G-WAIST-------- 209 (276)
Q Consensus 140 ~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~-~~~~~-------- 209 (276)
+..|+||-|++.|+++|++. +++.|+|+-||++|.-. ..| +.|+.+||||++.||.|| + |+.+.
T Consensus 427 GtfgTMGVG~Gfalaaa~~~----P~~~V~~veGDsaFGfS-aME-~ET~vR~~Lpvv~vV~NN~Giyg~d~~~~~~I~e 500 (571)
T KOG1185|consen 427 GTFGTMGVGLGFALAAALAA----PDRKVVCVEGDSAFGFS-AME-LETFVRYKLPVVIVVGNNNGIYGLDDDGWKQISE 500 (571)
T ss_pred ccccccccchhHHHHHHhhC----CCCeEEEEecCcccCcc-hhh-HHHHHHhcCCeEEEEecCCcccccCcccHHHHhh
Confidence 34789999988888888876 59999999999999653 234 899999999998888866 3 22211
Q ss_pred -------cccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 210 -------PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 210 -------~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
|...-....++.+.+++||.+++.|+ .++++.++++++.. .+++|++|.+...+..
T Consensus 501 ~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q---~~~~psvINVlI~p~~ 563 (571)
T KOG1185|consen 501 QDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQ---DTDKPSVINVLIGPTA 563 (571)
T ss_pred cCcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHHh---cCCCCeEEEEEecccc
Confidence 11111235678899999999999998 78899999988875 4679999999887654
No 132
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=99.27 E-value=1.2e-10 Score=109.13 Aligned_cols=164 Identities=18% Similarity=0.202 Sum_probs=116.8
Q ss_pred ChhHHHHHHHHhccCCCcEEEccCCcHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccccccccccc
Q 023827 71 SGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLP 150 (276)
Q Consensus 71 ~G~Ea~~~~~~~al~~~D~~~~~yR~~~~~~~~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~ 150 (276)
..|--+..++-....+++++.+. .|-.|.++-.-|.. +..+..|. ....++||+-+.
T Consensus 395 ptq~~vigav~~~~~~~svvvcA---------AGsLPGdLhkLW~~-------~~p~~YH~-------EYgfSCMGYEia 451 (617)
T COG3962 395 PTQTQVIGAVQRTISDDSVVVCA---------AGSLPGDLHKLWRA-------GVPGTYHL-------EYGFSCMGYEIA 451 (617)
T ss_pred ccchhHHHHHHhhcCCCcEEEEe---------CCCCcHHHHHHhcc-------CCCCceee-------eecccccccccc
Confidence 33333445666777778888775 45445554443432 22233443 344689999999
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeC-Cccc------cc-----------ccc
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAI------ST-----------PIS 212 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~------~~-----------~~~ 212 (276)
-++|+.+| .+++.|++++||||+.| .+.+|.++..++..+++++.+| +|+. .+ ...
T Consensus 452 G~lG~K~a----~pdreV~vmVGDGSymM--lnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~sf~~~~r~~~~ 525 (617)
T COG3962 452 GGLGAKAA----EPDREVYVMVGDGSYMM--LNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGASFNNLLRDTDH 525 (617)
T ss_pred cccccccC----CCCCeEEEEEcccchhh--hhHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcchhhhhhhhhcc
Confidence 99998855 45899999999999986 5566999999999887776655 5652 11 011
Q ss_pred -CccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 023827 213 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSF 269 (276)
Q Consensus 213 -~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 269 (276)
......|+++.|++||.++.+|. +++++.+|++.|.+ ..++++|+++|.+.
T Consensus 526 e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL~aAL~~Ak~----~~~ttvi~I~t~P~ 577 (617)
T COG3962 526 EEEILQVDFAAHAESYGAKAYKVG--TIEELEAALADAKA----SDRTTVIVIDTDPK 577 (617)
T ss_pred cCCCCcccHHHHHhhcCceeEecC--CHHHHHHHHHHHHh----CCCCEEEEEecCCc
Confidence 23456799999999999999996 78888887777665 68999999999875
No 133
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.23 E-value=3.1e-11 Score=114.21 Aligned_cols=123 Identities=18% Similarity=0.172 Sum_probs=94.1
Q ss_pred cccccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCC-CEEEEEEeCCccccccc----cC
Q 023827 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPI----SD 213 (276)
Q Consensus 139 ~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~----~~ 213 (276)
...+|++|+.+|.++|+++|.+ +++|+.|+|||+||+- ++| +.++.+|+| |++|+++|++|.+.... ..
T Consensus 411 q~~wgsIG~svga~lG~a~a~~----e~rvilfiGDGs~qlT-vQe-iStmir~gl~~~if~~NN~GYTIE~~IH~~~Yn 484 (561)
T KOG1184|consen 411 QMQWGSIGWSVGATLGYAQAAP----EKRVILFIGDGSFQLT-VQE-ISTMIRWGLKPIIFLINNGGYTIEVEIHDGPYN 484 (561)
T ss_pred EEEEeeccccchhhhhhhhccC----CceEEEEecCccceee-HHH-HHHHHhcCCCcEEEEEeCCceEEEEeecCCCcc
Confidence 3458999999999999999987 7999999999999984 555 999999999 78999999999874322 23
Q ss_pred ccCCcchhhhHhhcCceE---EEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 023827 214 QFRSDGAVVKGRAYGVRS---IRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSF 269 (276)
Q Consensus 214 ~~~~~~~~~~a~a~G~~~---~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 269 (276)
.....++.++.++||..- ....-....++.++.+.+... +.++|++|||+....
T Consensus 485 ~I~~Wd~~~l~~afg~~~gk~~~~~v~~~~e~~~~~~~~~~~--~~~~i~liEv~l~~~ 541 (561)
T KOG1184|consen 485 DIQNWDYTALLEAFGAGEGKYETHKVRTEEELVEAIKDATFE--KNDKIRLIEVILPVD 541 (561)
T ss_pred ccccchHHHHHHhhcCccceeEEeeeccchHHHHHHhhhhhc--ccCceEEEEEecCcc
Confidence 334578999999998543 222222346777777777632 467899999987654
No 134
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.22 E-value=3.6e-11 Score=111.59 Aligned_cols=116 Identities=22% Similarity=0.221 Sum_probs=93.5
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCcc-ccc----------c
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA-IST----------P 210 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~-~~~----------~ 210 (276)
-|+||.|+|+|+|+..|.+ +..|+-+-||++|.+. ..| |.++.+.++|+.+++.||.-+ +-+ .
T Consensus 523 LGtMGfGLPAAIGAsVA~P----~~iViDIDGDaSF~Mt-~~E-Lat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe~ry 596 (675)
T KOG4166|consen 523 LGTMGFGLPAAIGASVANP----DAIVIDIDGDASFIMT-VQE-LATIRQENLPVKILILNNEEQGMVTQWQDLFYEARY 596 (675)
T ss_pred ccccccCcchhhcccccCc----ccEEEeccCCceeeee-hHh-hhhhhhcCCceEEEEecchhhhhHHHHHHHHHHhhh
Confidence 4799999999999999876 8999999999999874 345 999999999999999999632 211 0
Q ss_pred ccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 023827 211 ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSF 269 (276)
Q Consensus 211 ~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 269 (276)
.+..--.+++.++|.++|++..+|. .-+++.+.+++.+. .+||+|+|+.+...
T Consensus 597 sHThQ~nPnf~klA~AmGikalRV~--K~edL~~k~kefls----TkGPvLleV~v~~k 649 (675)
T KOG4166|consen 597 SHTHQENPNFLKLAAAMGIKALRVT--KKEDLREKIKEFLS----TKGPVLLEVIVPHK 649 (675)
T ss_pred ccccccCccHHHHHHhcCCchheee--hHHHHHHHHHHHhC----CCCCeEEEEEccCc
Confidence 1111134789999999999999997 45788888888775 68999999998654
No 135
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.16 E-value=5.4e-10 Score=101.51 Aligned_cols=124 Identities=19% Similarity=0.132 Sum_probs=98.2
Q ss_pred CccccccccccccchhhhHHHHhhhcCCCceEEEEECCCcC-CcchHHHHHHHHHHCCCCEEEEEEeCCccc-ccccc--
Q 023827 137 NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPIS-- 212 (276)
Q Consensus 137 ~~~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~-~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~-~~~~~-- 212 (276)
++....+.+|.+.++|.|++.|.+..+++..||++.|||++ ..|. ++|.-|...+.|+++||.||.... ++.+.
T Consensus 63 ~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~--~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~ 140 (299)
T PRK11865 63 NVPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGF--QSLSGAMERGHNILYLMYDNEAYMNTGIQRSG 140 (299)
T ss_pred ccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccH--HHHHHHHHcCCCeEEEEECCccccCCCCCCCC
Confidence 34445688999999999999998876677899999999999 4553 679999999999999999997532 21110
Q ss_pred --------------C-----ccCCcchhhhHhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 213 --------------D-----QFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 213 --------------~-----~~~~~~~~~~a~a~G~~~~-~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
. ..+..|+..++.++|.+.+ +++-.|+.++.+++++|.+ .+||++|++..
T Consensus 141 ~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~----~~Gps~I~v~s 210 (299)
T PRK11865 141 STPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE----VEGPAYIQVLQ 210 (299)
T ss_pred CCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 0 2235678999999999876 6777899999999999986 47999999874
No 136
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=99.02 E-value=6e-10 Score=101.01 Aligned_cols=125 Identities=19% Similarity=0.194 Sum_probs=99.7
Q ss_pred ccccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCcc-c----------c
Q 023827 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA-I----------S 208 (276)
Q Consensus 140 ~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~-~----------~ 208 (276)
+..|++|+.+|.|+|+..|.+ ++.+|++.||-.|+- ..|.|...+++|+|.|+|+.||.|- . +
T Consensus 416 gqagplgwtipaalgv~~adp----~r~vvalsgdydfqf--mieelavgaq~k~pyihv~vnnaylglirqaqr~f~md 489 (592)
T COG3960 416 GQAGPLGWTIPAALGVCAADP----KRNVVAISGDYDFQF--LIEELAVGAQFKIPYIHVLVNNAYLGLIRQAQRAFDMD 489 (592)
T ss_pred CccCCcccccchhhceeecCC----CCceEEeecCchHHH--HHHHHhhhhcccCceEEEEecchHHHHHHHHHhcCCcc
Confidence 346899999999999987754 889999999999985 5688999999999999999999872 1 1
Q ss_pred cccc----Cc------cCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 023827 209 TPIS----DQ------FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIF 272 (276)
Q Consensus 209 ~~~~----~~------~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~ 272 (276)
...+ .. --..|-.+.+++.|++.++|- ++.++..++++|.....+..-|+++|++.-|..+-
T Consensus 490 y~v~laf~nin~~~~~gygvdhv~v~eglgckairv~--~p~e~a~af~~a~~lm~eh~vpvvve~ilervtni 561 (592)
T COG3960 490 YCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQHRVPVVVEVILERVTNI 561 (592)
T ss_pred ceeeehhhccCCccccccCccceeehhccCceeEEec--ChHHhhHHHHHHHHHHHhcCCCeeeehHHHHhhcc
Confidence 0000 00 012456678899999999996 78899999999988777888999999988876653
No 137
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=98.66 E-value=1.1e-07 Score=93.43 Aligned_cols=199 Identities=18% Similarity=0.162 Sum_probs=133.7
Q ss_pred CCCCHHHHHHHHHHHHHH--------hhHHHHH------HHHHhcCcccccccCChhHHHHHHHHhccCCCc--EEEccC
Q 023827 31 VKVSEGVAIKMYNDMVTL--------QTMDTIF------YEAQRQGRISFYLTTSGEEAINIASAAAIKNDD--FVVPQY 94 (276)
Q Consensus 31 ~~~~~~~l~~ly~~m~~~--------R~~d~~~------~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~~~D--~~~~~y 94 (276)
..++.++|.++++.==-+ +..|... .+..+...++.|-+..|.--+.++....++.-| .++..-
T Consensus 13 ~~~~~e~L~~~~~ywRA~~yL~~g~i~l~dnpl~~~pl~~e~lK~r~lGHwGt~pg~s~~Y~H~nr~i~~~d~~~~yv~G 92 (793)
T COG3957 13 IPLTGEELADVDAYWRAANYLAAGQIYLSDNPLLREPLQAEHLKARLLGHWGTQPGLSFIYAHLNRLISKYDANMAYVMG 92 (793)
T ss_pred CcCChHHHHHHHHHHHHhhhhhhcceeeecCCcccccCChhhccchhcccccCCCCchhhhhhhhHHHHhhCcceEEEec
Confidence 367888887776653001 1111111 222333345778888999999999888877654 444443
Q ss_pred CcHHHH------HHcC----------C---CHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccccccccccchhhhH
Q 023827 95 REPGVL------LWRG----------F---SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGA 155 (276)
Q Consensus 95 R~~~~~------~~~G----------~---~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~A~G~ 155 (276)
.||+.. ..-| . -+.+++.+|. --.++++|.....+|.+...|.||+++..|.|+
T Consensus 93 pGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qFs-------~PgGi~SH~~petPGsIhEGGeLGy~l~ha~gA 165 (793)
T COG3957 93 PGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQFS-------FPGGIGSHVAPETPGSIHEGGELGYALSHAYGA 165 (793)
T ss_pred CCCCcceeeeccccCCccccccccccccHHHHHHHHHhcc-------CCCCcccccCCCCCCccCcCcchhHHHHHHHHh
Confidence 444211 1112 1 1334455544 235688999887889888899999999999999
Q ss_pred HHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHC-C-C------CEEEEEEeCCccccccccCc-cCCcchhhhHhh
Q 023827 156 AYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-E-A------PVIFICRNNGWAISTPISDQ-FRSDGAVVKGRA 226 (276)
Q Consensus 156 A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~-~-L------pvi~vv~nN~~~~~~~~~~~-~~~~~~~~~a~a 226 (276)
++-++ +..+.|++|||+..+|. +.+...- + + .++-|+.=|+|.|+.|+.-. .+...+.+.+++
T Consensus 166 a~d~P----dli~~~vvGDGeaetgp----latsWhs~kf~np~~dGavLPIL~lNGykI~npT~lar~s~~el~~~f~G 237 (793)
T COG3957 166 AFDNP----DLIVACVVGDGEAETGP----LATSWHSNKFLNPARDGAVLPILHLNGYKIENPTVLARISDEELKALFEG 237 (793)
T ss_pred hcCCC----CcEEEEEecccccccCc----cccccccccccCccccCceeeEEEecceeccCceeeeecChHHHHHHHhh
Confidence 98654 89999999999887776 3333321 1 2 37888889999998876543 345668999999
Q ss_pred cCceEEEEcCCCHHHHHH
Q 023827 227 YGVRSIRVDGNDALAIYS 244 (276)
Q Consensus 227 ~G~~~~~vdg~d~~~v~~ 244 (276)
||+.-+.|+|.|+.+...
T Consensus 238 ~Gy~p~~veg~d~~d~hq 255 (793)
T COG3957 238 YGYEPVFVEGADPADMHQ 255 (793)
T ss_pred CCCceeEecCCChHHhhh
Confidence 999999999988877433
No 138
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=98.62 E-value=3.8e-07 Score=83.04 Aligned_cols=115 Identities=19% Similarity=0.208 Sum_probs=88.2
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcC-CcchHHHHHHHHHHCCCCEEEEEEeCCc-ccc-------ccc-
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNGW-AIS-------TPI- 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~-~~G~~~Eal~~A~~~~Lpvi~vv~nN~~-~~~-------~~~- 211 (276)
.+.-|-+.++|.|+.+|.+ +..||++.|||.. ..|. ..+.-|.+.+.+|++||.||.. +.+ +|.
T Consensus 69 hs~~gra~a~atGik~A~~----~l~Viv~gGDG~~~dIG~--~~l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp~G 142 (294)
T COG1013 69 HSLHGRAAAVATGIKLANP----ALSVIVIGGDGDAYDIGG--NHLIHALRRNHDITYIVVDNEVYGNTGGQASPTTPKG 142 (294)
T ss_pred eeccCcchhhHHHHHHhcc----CCeEEEEecchhHhhhhh--HHHHHHHHcCCCeEEEEECCeecccCCCccCCCCCCC
Confidence 4577888999999999987 6799999999954 7775 3377888999999999999974 322 111
Q ss_pred --------cCcc-CCcchhhhHhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 212 --------SDQF-RSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 212 --------~~~~-~~~~~~~~a~a~G~~~~-~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
.... ..-|+..++-++|...+ ++.--++..+.+.+++|.++ +||++|++.+
T Consensus 143 ~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~~----~Gps~I~v~s 203 (294)
T COG1013 143 AKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAEH----KGPSFIDVLS 203 (294)
T ss_pred ceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHhc----cCCeEEEEec
Confidence 1111 33478889999998765 66666799999999999975 6999999864
No 139
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=98.47 E-value=4.5e-06 Score=80.61 Aligned_cols=220 Identities=17% Similarity=0.127 Sum_probs=123.1
Q ss_pred CeeEeeCCCCCCCCCCCC----CCCCHHHHHHHH--------HHHHHHhhHHHHHHHHHhcCcccccccCChhHH-HHHH
Q 023827 13 PCYRVLDDDGQPFPDSSF----VKVSEGVAIKMY--------NDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEA-INIA 79 (276)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~----~~~~~~~l~~ly--------~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea-~~~~ 79 (276)
..+-++|+.+...|+... -..+..++.+-+ .|..++-.+++++.+..++-.-.- ... |+ ++..
T Consensus 306 ~~~~vvd~~~~~~Dp~~~~~~~~~~~v~~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~v~~~~~~~---~~~-e~~~a~~ 381 (566)
T COG1165 306 IEYWVVDPGGGWLDPSHHATTRLSADVATWARSIHPAGRIRKPWLDEWLALNEKARQAVRDQLAAE---ALT-EAHLAAA 381 (566)
T ss_pred CcEEEEcCCCCcCCcccccceEEEeehhHhHHHhccccccccHHHHHHHHHHHHHHHHHHHHhccc---Cch-hhHHHHH
Confidence 467788888777766521 122334444211 234444455555443332211110 111 33 2334
Q ss_pred HHhccCCCcEEEccCCcHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccccccccccchhhhHHHHh
Q 023827 80 SAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYAL 159 (276)
Q Consensus 80 ~~~al~~~D~~~~~yR~~~~~~~~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~A~G~A~a~ 159 (276)
+...|.++|.+|.. ..++.++ +..+ ++. -.+..++-.....|+ -.-++-|+|++.|.
T Consensus 382 l~~~lp~~~~LFvg---------NSmpVRd-vd~~-~~~-----~~~~~v~sNRGA~GI-------DG~vSTA~Gi~~a~ 438 (566)
T COG1165 382 LADLLPPQDQLFVG---------NSMPVRD-VDAL-GQL-----PAGYRVYSNRGASGI-------DGTVSTALGIARAT 438 (566)
T ss_pred HHHhCCCCCeEEEe---------cCchhhh-HHHh-ccC-----ccCceeecCCCcccc-------chhHHHHhhhhhhc
Confidence 66778888888864 2344333 2222 221 122333222212222 22366789998875
Q ss_pred hhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCE-EEEEEeCCccccc--cc-------cCcc---CCcchhhhHhh
Q 023827 160 KMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPV-IFICRNNGWAIST--PI-------SDQF---RSDGAVVKGRA 226 (276)
Q Consensus 160 k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpv-i~vv~nN~~~~~~--~~-------~~~~---~~~~~~~~a~a 226 (276)
+ ++++.++||=||-.-. -+|........|+ |+|++||+-+|-. |+ +..+ ..-||+..++.
T Consensus 439 ~-----~ptv~liGDLS~lhD~--NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~fe~~F~tPh~ldF~~la~~ 511 (566)
T COG1165 439 Q-----KPTVALIGDLSFLHDL--NGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPVFERLFGTPHGLDFAHLAAT 511 (566)
T ss_pred C-----CceEEEEechhhhhcc--chHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcchHHHhcCCCCCCCHHHHHHH
Confidence 3 6799999999993211 1255556666786 5555666655521 11 1111 24589999999
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 023827 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIF 272 (276)
Q Consensus 227 ~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~ 272 (276)
||+...+++ +..++..+++.+.. ..|-++||++|.|-.++
T Consensus 512 y~l~y~~~~--s~~~l~~~~~~~~~----~~g~~viEvkt~r~~~~ 551 (566)
T COG1165 512 YGLEYHRPQ--SWDELGEALDQAWR----RSGTTVIEVKTDRSDGA 551 (566)
T ss_pred hCccccccC--cHHHHHHHHhhhcc----CCCcEEEEEecChhHHH
Confidence 999999886 56788888877764 35789999999997653
No 140
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=98.43 E-value=1.1e-06 Score=85.92 Aligned_cols=114 Identities=21% Similarity=0.205 Sum_probs=87.0
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCC-cchHHHHHHHHHHCCCCEEEEEEeCCcc-ccccccCc----
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGWA-ISTPISDQ---- 214 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~-~G~~~Eal~~A~~~~Lpvi~vv~nN~~~-~~~~~~~~---- 214 (276)
.+-.||.++++|-|++++.. +++++++|||.|. .|. .+|.-|...+.|++++|.+|.+. +++.+...
T Consensus 426 ~t~~mGssig~a~g~~~~~~-----k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~ 498 (640)
T COG4231 426 TTTMMGSSIGIAGGLSFAST-----KKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGV 498 (640)
T ss_pred hhhhccchhhhccccccccC-----CceEEEeccccccccCc--HHHHHHHhcCCCeEEEEEeccchhccCCCCCCCccc
Confidence 34578888999999887753 7899999999995 453 45888888899999999999874 44322211
Q ss_pred ------cCCcchhhhHhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEE
Q 023827 215 ------FRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEVK 265 (276)
Q Consensus 215 ------~~~~~~~~~a~a~G~~~~-~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~ 265 (276)
....++.+..++.|...+ +||-.|+.++.+++++|++. .+|++|.++
T Consensus 499 ~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale~----~gpsViiak 552 (640)
T COG4231 499 AAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALEV----PGPSVIIAK 552 (640)
T ss_pred ccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhcC----CCceEEEEc
Confidence 234568889999999776 56668999999999998874 789988654
No 141
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=97.72 E-value=0.00022 Score=75.38 Aligned_cols=117 Identities=13% Similarity=0.051 Sum_probs=82.0
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCC-cchHHHHHHHHHHCCCCEEEEEEeCCc-ccccccc--CccCC
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGW-AISTPIS--DQFRS 217 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~-~G~~~Eal~~A~~~~Lpvi~vv~nN~~-~~~~~~~--~~~~~ 217 (276)
...||.....++|.+...+ ++.+|+++|||.|. .|. -+|.-|...+.|++++|.+|.. ++++.+. ...+.
T Consensus 480 ~~~MG~eg~~~~G~a~f~~----~~hv~a~iGDgTffHSG~--~al~~AV~~~~nit~~IL~N~~vAMTGgQ~~~g~~~~ 553 (1165)
T PRK09193 480 FTQMGGEGVPWIGQAPFTD----EKHVFQNLGDGTYFHSGL--LAIRAAVAAGVNITYKILYNDAVAMTGGQPVDGGLSV 553 (1165)
T ss_pred eeccCCcchhhceeccccC----CCcEEEEeccccchhcCH--HHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCcch
Confidence 4578988889999887633 46799999999994 454 3577788888999988887775 5654332 22356
Q ss_pred cchhhhHhhcCceEEEEcCCCHHHHHHH--------------HHHHHHHhHccCCCEEEEE
Q 023827 218 DGAVVKGRAYGVRSIRVDGNDALAIYSA--------------VHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 218 ~~~~~~a~a~G~~~~~vdg~d~~~v~~a--------------~~~a~~~~r~~~~P~lIe~ 264 (276)
.++.+..++.|.+-+.|-.+|+...... ++...+..|+.+|+++|..
T Consensus 554 ~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr~~~GvsViI~ 614 (1165)
T PRK09193 554 PQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELREIPGVTVLIY 614 (1165)
T ss_pred hhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 7888999999998776655566655333 3333333335678888764
No 142
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=97.70 E-value=0.00033 Score=65.28 Aligned_cols=95 Identities=15% Similarity=0.154 Sum_probs=69.8
Q ss_pred ceEEEEECCCcC-CcchHHHHHHHHHHCCCCEEEEEEeCC-ccccc-------c---------ccCccCCcchhhhHhhc
Q 023827 166 ACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAIST-------P---------ISDQFRSDGAVVKGRAY 227 (276)
Q Consensus 166 ~~vv~~~GDG~~-~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~-------~---------~~~~~~~~~~~~~a~a~ 227 (276)
..||++.|||.. ..|. ..+.-|...+.+|++||.||. |+.++ | .......-|+..++.++
T Consensus 152 ~~v~v~gGDG~~ydIG~--~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~ 229 (365)
T cd03377 152 KSVWIIGGDGWAYDIGY--GGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSY 229 (365)
T ss_pred cceEEEecchhhhccch--hhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHc
Confidence 589999999966 6664 336667778889988888886 43321 1 11222345788899999
Q ss_pred CceEE-EEcC-CCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 228 GVRSI-RVDG-NDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 228 G~~~~-~vdg-~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
|.+.+ ++.- .++.++.+++++|.++ +||++|++.+
T Consensus 230 g~~YVA~~s~~~~~~~~~~~i~eA~~~----~Gps~I~v~s 266 (365)
T cd03377 230 GNVYVAQIALGANDNQTLKAFREAEAY----DGPSLIIAYS 266 (365)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHhcC----CCCEEEEEEc
Confidence 98765 5543 4899999999999874 8999999876
No 143
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.64 E-value=0.00036 Score=73.88 Aligned_cols=114 Identities=15% Similarity=0.093 Sum_probs=77.4
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCC-cchHHHHHHHHHHCCCCEEEEEEeCCc-cccccccC--ccCC
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGW-AISTPISD--QFRS 217 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~-~G~~~Eal~~A~~~~Lpvi~vv~nN~~-~~~~~~~~--~~~~ 217 (276)
...||...+.++|.+.+.. ++.+|+++|||.|. .|. -+|.-|...+.|++++|.+|.. ++++.+.. ..+.
T Consensus 467 ~~~MG~~g~~~~G~a~~~~----~~~v~a~iGDgTf~HSG~--~al~~AV~~~~nit~~IL~N~~tAMTGgQp~~g~i~v 540 (1159)
T PRK13030 467 LTQMGGEGVDWIGHAPFTE----TKHVFQNLGDGTYFHSGS--LAIRQAVAAGANITYKILYNDAVAMTGGQPVDGSISV 540 (1159)
T ss_pred eeccCccchhhceeccccC----CCCEEEEeccchhhhcCH--HHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCCCH
Confidence 4578888888999888743 46799999999994 454 2687788888999999988876 55544332 2222
Q ss_pred cchhhhHhhcCceEEEEcCCCHHH-----H-----------HHHHHHHHHHhHccCCCEEEEE
Q 023827 218 DGAVVKGRAYGVRSIRVDGNDALA-----I-----------YSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 218 ~~~~~~a~a~G~~~~~vdg~d~~~-----v-----------~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
+.+....++.|.+-+.|-.+|+.. + .+++++++ |+.+||++|..
T Consensus 541 ~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l---~~~~GvsViI~ 600 (1159)
T PRK13030 541 PQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQREL---RETPGVTVLIY 600 (1159)
T ss_pred HHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHH---hcCCCcEEEEE
Confidence 334447789999887765455544 2 23444444 34678888764
No 144
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.32 E-value=0.0015 Score=69.27 Aligned_cols=117 Identities=14% Similarity=0.045 Sum_probs=76.8
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCC-cchHHHHHHHHHHCCCCEEEEEEeCCc-ccccccc--CccCC
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGW-AISTPIS--DQFRS 217 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~-~G~~~Eal~~A~~~~Lpvi~vv~nN~~-~~~~~~~--~~~~~ 217 (276)
...||.....++|.+...+ ++.+|+++|||.|. .|. -+|.-|...+.|++++|.+|.. ++++.+. ...+.
T Consensus 494 ~~~MGgeg~~~~G~a~f~~----~~hv~aniGDgTffHSG~--~alr~AV~~~~nit~kIL~N~avAMTGgQp~~G~~~v 567 (1186)
T PRK13029 494 FSQMGGEGVAWIGQMPFSR----RRHVFQNLGDGTYFHSGL--LAIRQAIAAGVNITYKILYNDAVAMTGGQPVDGVLTV 567 (1186)
T ss_pred eeccCcchhhheeecccCC----CCCEEEEeccccchhcCH--HHHHHHHhcCCCEEEEEEeCcchhccCCCCCCCcCCH
Confidence 4578888888888887643 46799999999994 454 3577788888999998887775 5654332 22333
Q ss_pred cchhhhHhhcCceEEEEcCCCHHHHH--------------HHHHHHHHHhHccCCCEEEEE
Q 023827 218 DGAVVKGRAYGVRSIRVDGNDALAIY--------------SAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 218 ~~~~~~a~a~G~~~~~vdg~d~~~v~--------------~a~~~a~~~~r~~~~P~lIe~ 264 (276)
+.++...++.|.+-+.|-.+|+.... +.++...+..|+.+|+++|..
T Consensus 568 ~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~~GvsViI~ 628 (1186)
T PRK13029 568 PQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQRELREVPGVSVLIY 628 (1186)
T ss_pred HHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 44555779999977765333443332 233333333335678888764
No 145
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=96.98 E-value=0.014 Score=47.19 Aligned_cols=104 Identities=19% Similarity=0.172 Sum_probs=65.1
Q ss_pred cchhhhHHHHhhhcCCCceEEEEE-CCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhc
Q 023827 149 LPHAVGAAYALKMDRKDACAVTYF-GDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (276)
Q Consensus 149 l~~A~G~A~a~k~~~~~~~vv~~~-GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (276)
..+|.|.+++. . ..+++.. |.|..+ ..+++..|...++|+++|+...+..... .......+....++.+
T Consensus 48 ~~~A~G~a~~~----~-~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~~~~~~--~~~~q~~~~~~~~~~~ 117 (154)
T cd06586 48 AGAAAGYARAG----G-PPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARGISAQA--KQTFQSMFDLGMYRSI 117 (154)
T ss_pred HHHHHHHHHhh----C-CEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCChhhhc--cCcccccCHHHHHHHh
Confidence 34566666552 2 3333334 787764 3466778888899999999766543211 1112223445566666
Q ss_pred CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 228 G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
......+ .++.+..+.+.+|+..+....+|++|++
T Consensus 118 ~~~~~~~--~~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 118 PEANISS--PSPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred hheEEEe--CCHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 5555555 4667777778888877777789999976
No 146
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=96.80 E-value=0.02 Score=46.68 Aligned_cols=105 Identities=21% Similarity=0.152 Sum_probs=65.9
Q ss_pred cchhhhHHHHhhhcCCCceEEEEE-CCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhc
Q 023827 149 LPHAVGAAYALKMDRKDACAVTYF-GDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (276)
Q Consensus 149 l~~A~G~A~a~k~~~~~~~vv~~~-GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (276)
..+|.|.+++.. +.-+++.. |=|..+ ..+++..|...++|+|+|.-+.......... ....|..+..+.+
T Consensus 47 ~~~A~g~~~~~~----~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~--~q~~d~~~~~~~~ 117 (155)
T cd07035 47 VGMADGYARATG----KPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRPTAGEGRGA--FQEIDQVALFRPI 117 (155)
T ss_pred HHHHHHHHHHHC----CCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCccccccCCc--ccccCHHHHHHHH
Confidence 345566665532 22233333 555554 4467888888999999998765533211111 1123445555555
Q ss_pred CceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEE
Q 023827 228 GVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEV 264 (276)
Q Consensus 228 G~~~~~vdg~d~~~v~~a~~~a~~~~r~~-~~P~lIe~ 264 (276)
-....+++ +++++.+.+.+|++.+... ++|+.|++
T Consensus 118 ~~~~~~i~--~~~~~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 118 TKWAYRVT--SPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred hceEEEcC--CHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 44466664 7889999999999888776 68999986
No 147
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=96.70 E-value=0.028 Score=46.76 Aligned_cols=105 Identities=16% Similarity=0.055 Sum_probs=70.8
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|-|.+.+. ++-..+++..|=|.++. .-++..|..-++|+|+|.-+....... .......|..++++.+--.
T Consensus 53 mA~gyar~t---g~~~v~~~t~GpG~~n~---~~~l~~A~~~~~Pvl~I~g~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 124 (164)
T cd07039 53 AASAEAKLT---GKLGVCLGSSGPGAIHL---LNGLYDAKRDRAPVLAIAGQVPTDELG--TDYFQEVDLLALFKDVAVY 124 (164)
T ss_pred HHHHHHHHh---CCCEEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEecCCcccccC--CCCCcccCHHHHHHHhhcE
Confidence 455555543 23455566667777763 345778888999999999765533211 1112223667778877666
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVK 265 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~ 265 (276)
..+++ +++++.+++++|++.++..+||+.|++-
T Consensus 125 ~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP 157 (164)
T cd07039 125 NETVT--SPEQLPELLDRAIRTAIAKRGVAVLILP 157 (164)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 77775 7888888999998888777899999974
No 148
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=96.62 E-value=0.011 Score=63.28 Aligned_cols=96 Identities=16% Similarity=0.177 Sum_probs=70.1
Q ss_pred ceEEEEECCCcC-CcchHHHHHHHHHHCCCCEEEEEEeCCc-ccc-------cc---------ccCccCCcchhhhHhhc
Q 023827 166 ACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNGW-AIS-------TP---------ISDQFRSDGAVVKGRAY 227 (276)
Q Consensus 166 ~~vv~~~GDG~~-~~G~~~Eal~~A~~~~Lpvi~vv~nN~~-~~~-------~~---------~~~~~~~~~~~~~a~a~ 227 (276)
..||++.|||.. ..|. ..+.-+...+.++.+||.||.. +.+ +| .......-|+..++.++
T Consensus 952 ~sv~~~~GDG~~~diG~--~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGY--GGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccCc--cchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 479999999966 5653 3377778889999888888863 322 21 11122345788899999
Q ss_pred CceEE-EEc-CCCHHHHHHHHHHHHHHhHccCCCEEEEEEEe
Q 023827 228 GVRSI-RVD-GNDALAIYSAVHAAREMAIGEGRPILIEVKCL 267 (276)
Q Consensus 228 G~~~~-~vd-g~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~ 267 (276)
|.+.+ ++. +.++.++.+++++|.++ +||++|++.+.
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~~~----~G~s~i~~~~p 1067 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAEAY----DGPSIVIAYSP 1067 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHHcC----CCCEEEEEECC
Confidence 98765 555 45899999999999864 89999998763
No 149
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=96.58 E-value=0.035 Score=45.98 Aligned_cols=107 Identities=16% Similarity=0.076 Sum_probs=67.9
Q ss_pred ccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHH-HCCCCEEEEEEeCCc-cccccccCccCCcch-hh
Q 023827 146 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSA-VTEAPVIFICRNNGW-AISTPISDQFRSDGA-VV 222 (276)
Q Consensus 146 G~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~-~~~Lpvi~vv~nN~~-~~~~~~~~~~~~~~~-~~ 222 (276)
+.+..+|.|..++ ..+.++|+.+=|-. ..--+|..|. ..++|+++|+-.-+. +-..+. +.....+ ..
T Consensus 44 e~aa~~aAg~~~~-----~~~~~v~~~~sG~g---n~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~--q~~~g~~~~~ 113 (157)
T TIGR03845 44 EEGVGICAGAYLA-----GKKPAILMQSSGLG---NSINALASLNKTYGIPLPILASWRGVYKEKIPA--QIPMGRATPK 113 (157)
T ss_pred HHHHHHHHHHHHh-----cCCcEEEEeCCcHH---HHHHHHHHHHHcCCCCEEEEEeccCCCCCCCcc--ccchhhhhHH
Confidence 3444556666644 24567888887733 4455688888 899999999954443 111111 1111111 12
Q ss_pred hHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEE
Q 023827 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVK 265 (276)
Q Consensus 223 ~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~ 265 (276)
.....+++...++ +++++ +++++|++.+.++++|+.|-+.
T Consensus 114 ~l~~~~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~~ 153 (157)
T TIGR03845 114 LLDTLGIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALLD 153 (157)
T ss_pred HHHHcCCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence 2345677777775 58889 9999999999888899988763
No 150
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=96.56 E-value=0.026 Score=46.87 Aligned_cols=106 Identities=19% Similarity=0.169 Sum_probs=67.4
Q ss_pred chhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCcccccc---ccCcc--C-Ccchhhh
Q 023827 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP---ISDQF--R-SDGAVVK 223 (276)
Q Consensus 150 ~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~---~~~~~--~-~~~~~~~ 223 (276)
-+|-|.+.+.+ -.++++..|=|..+. .-++..|...+.|+|+|.-+........ ..... . ..|..++
T Consensus 49 ~mA~gyar~t~----~gv~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 121 (162)
T cd07038 49 YAADGYARVKG----LGALVTTYGVGELSA---LNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKM 121 (162)
T ss_pred HHHHHHHHhhC----CEEEEEcCCccHHHH---HHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchHHHHHH
Confidence 34555555431 334444447666652 3457788888999999997654321111 00001 1 1245667
Q ss_pred HhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 224 GRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 224 a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
++.+--...+|. +++++.+++++|++.+..+++|+.|++
T Consensus 122 ~~~~tk~~~~v~--~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 122 FEEITCAAARLT--DPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHhheeEEEEeC--CHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 777766677775 778889999999988888889999986
No 151
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=96.46 E-value=0.028 Score=46.14 Aligned_cols=105 Identities=16% Similarity=0.089 Sum_probs=64.4
Q ss_pred cchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcC
Q 023827 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (276)
Q Consensus 149 l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (276)
..+|-|.+++. . +.+++..|-|..+ ...+|..|...+.|+|+|+-+................+.....+. -
T Consensus 54 ~~~A~g~~r~~----~-~v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~ 124 (160)
T cd07034 54 AEAAIGASAAG----A-RAMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGGH-P 124 (160)
T ss_pred HHHHHHHHhhC----C-cEEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-C
Confidence 34455555532 2 2566666777775 334577888888999999976543221100101111122223333 3
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 229 ~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
+.+.++ .+++++.+.+++|++.++.+++|++|..
T Consensus 125 ~~~~~~--~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 125 WPVLAP--SSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred EEEEeC--CCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 566665 4789999999999999998889998864
No 152
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.40 E-value=0.036 Score=46.26 Aligned_cols=106 Identities=22% Similarity=0.106 Sum_probs=69.1
Q ss_pred cchhhhHHHHhhhcCCCceEEEEE--CCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhh
Q 023827 149 LPHAVGAAYALKMDRKDACAVTYF--GDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 226 (276)
Q Consensus 149 l~~A~G~A~a~k~~~~~~~vv~~~--GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a 226 (276)
..+|.|.+++. +++.+|+. |=|.++. .-++..|...++|+|+|+-.-.......... ....|...+++.
T Consensus 52 ~~~A~g~ar~~-----g~~~v~~~~~GpG~~n~---~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~-q~~~d~~~~~~~ 122 (172)
T PF02776_consen 52 AFMADGYARAT-----GRPGVVIVTSGPGATNA---LTGLANAYADRIPVLVITGQRPSAGEGRGAF-QQEIDQQSLFRP 122 (172)
T ss_dssp HHHHHHHHHHH-----SSEEEEEEETTHHHHTT---HHHHHHHHHTT-EEEEEEEESSGGGTTTTST-TSSTHHHHHHGG
T ss_pred HHHHHHHHHhh-----ccceEEEeecccchHHH---HHHHhhcccceeeEEEEecccchhhhccccc-ccchhhcchhcc
Confidence 34566666653 34444444 4455543 2357778888999999998776543331111 113467778888
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHh-HccCCCEEEEEE
Q 023827 227 YGVRSIRVDGNDALAIYSAVHAAREMA-IGEGRPILIEVK 265 (276)
Q Consensus 227 ~G~~~~~vdg~d~~~v~~a~~~a~~~~-r~~~~P~lIe~~ 265 (276)
+.-...+++ +++++.+++++|++.+ ....+|+.|++-
T Consensus 123 ~~k~~~~v~--~~~~~~~~~~~A~~~a~~~~~gPv~l~ip 160 (172)
T PF02776_consen 123 VTKWSYRVT--SPDDLPEALDRAFRAATSGRPGPVYLEIP 160 (172)
T ss_dssp GSSEEEEEC--SGGGHHHHHHHHHHHHHHCSTSEEEEEEE
T ss_pred ccchhcccC--CHHHHHHHHHHHHHHhccCCCccEEEEcC
Confidence 887788886 5667888888888877 677899999974
No 153
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=95.05 E-value=0.19 Score=41.37 Aligned_cols=101 Identities=20% Similarity=0.182 Sum_probs=60.7
Q ss_pred ccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHH-HHHHCCCCEEEEEEeCCccc--cccccCccCCcchhhhH
Q 023827 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN-FSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKG 224 (276)
Q Consensus 148 ~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~-~A~~~~Lpvi~vv~nN~~~~--~~~~~~~~~~~~~~~~a 224 (276)
.+++|.|+|+. + .+++++.. ..|.. -.++.+. .++.+++|+++++...++.. .++++. ...+++-+.
T Consensus 51 ~vg~A~GlA~~----G-~~pi~~~~--~~f~~-ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~--~~~~~a~~~ 120 (156)
T cd07033 51 MVGIAAGLALH----G-LKPFVSTF--SFFLQ-RAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQ--GIEDIALLR 120 (156)
T ss_pred HHHHHHHHHHC----C-CeEEEEEC--HHHHH-HHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccc--hHHHHHHhc
Confidence 34566677653 2 24444444 45533 3345455 88889999999998776654 334332 123333222
Q ss_pred hhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 225 RAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 225 ~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
.--|+.++. -.|+.++...+++|++ .++|++|-.
T Consensus 121 ~iPg~~v~~--Ps~~~~~~~ll~~a~~----~~~P~~irl 154 (156)
T cd07033 121 AIPNMTVLR--PADANETAAALEAALE----YDGPVYIRL 154 (156)
T ss_pred CCCCCEEEe--cCCHHHHHHHHHHHHh----CCCCEEEEe
Confidence 223666554 3588899999999986 357988754
No 154
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=94.84 E-value=0.22 Score=41.48 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=60.5
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|-|.+.+. ++-.++++..|=|..+. .-++..|..-+.|+|+|+-+-....... ......|...+++.+--.
T Consensus 50 mAdgyar~s---g~~gv~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~l~~~vtk~ 121 (162)
T cd07037 50 FALGLAKAS---GRPVAVVCTSGTAVANL---LPAVVEAYYSGVPLLVLTADRPPELRGT--GANQTIDQVGLFGDYVRW 121 (162)
T ss_pred HHHHHHHhh---CCCEEEEECCchHHHHH---hHHHHHHHhcCCCEEEEECCCCHHhcCC--CCCcccchhhhccceeeE
Confidence 455555543 23344555556666652 2457788888999999997544322111 111223444555555444
Q ss_pred EEEEcCCCHHH------HHHHHHHHHHHhHccC-CCEEEEE
Q 023827 231 SIRVDGNDALA------IYSAVHAAREMAIGEG-RPILIEV 264 (276)
Q Consensus 231 ~~~vdg~d~~~------v~~a~~~a~~~~r~~~-~P~lIe~ 264 (276)
..++. ++++ +.+.+++|+..++.+. ||++|++
T Consensus 122 ~~~v~--~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~i 160 (162)
T cd07037 122 SVDLP--PPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNL 160 (162)
T ss_pred EEecC--CcccchhHHHHHHHHHHHHHHHhCCCCCCEEEec
Confidence 55553 3334 6777777777776654 8999986
No 155
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=94.49 E-value=0.35 Score=48.05 Aligned_cols=105 Identities=20% Similarity=0.170 Sum_probs=73.1
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|-|.|. ..++..++++..|=|+.+- --+|..|..-+.|+|+|.-.=. ...-..+.+...|...+++.+=-.
T Consensus 54 mAdgyar---~TGkpgV~~~tsGPGatN~---~tgla~A~~d~~Pll~itGqv~--~~~~g~~afQe~D~~~l~~p~tk~ 125 (550)
T COG0028 54 AADGYAR---ATGKPGVCLVTSGPGATNL---LTGLADAYMDSVPLLAITGQVP--TSLIGTDAFQEVDQVGLFRPITKY 125 (550)
T ss_pred HHHHHHH---HcCCCEEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeCCcc--ccccCcchhhhcchhhHhhhhhee
Confidence 3444443 3456788999999999973 2358888888999999986211 111111222334677777777666
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVK 265 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~ 265 (276)
.++|. +++++.+.+++|.+.+..++ ||++|++-
T Consensus 126 ~~~v~--~~~~ip~~i~~Af~~A~sgrpGpv~i~iP 159 (550)
T COG0028 126 NFEVR--SPEDIPEVVARAFRIALSGRPGPVVVDLP 159 (550)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 66775 78999999999999888777 89999863
No 156
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=94.48 E-value=0.36 Score=45.24 Aligned_cols=108 Identities=16% Similarity=0.131 Sum_probs=74.3
Q ss_pred ccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchh-h-hHh
Q 023827 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAV-V-KGR 225 (276)
Q Consensus 148 ~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~-~-~a~ 225 (276)
++.+|+|++++ ..++++.+-|..+.- .+|.+..|+-..+|+++++.+-. +-++.. .+....|.. . +..
T Consensus 60 A~~~a~GAs~a------G~Ra~taTSg~Gl~l--m~E~l~~a~~~e~P~v~v~v~R~-~p~~g~-t~~eq~D~~~~~~~~ 129 (352)
T PRK07119 60 AINMVYGAAAT------GKRVMTSSSSPGISL--KQEGISYLAGAELPCVIVNIMRG-GPGLGN-IQPSQGDYFQAVKGG 129 (352)
T ss_pred HHHHHHHHHhh------CCCEEeecCcchHHH--HHHHHHHHHHccCCEEEEEeccC-CCCCCC-CcchhHHHHHHHhcC
Confidence 46678888888 567888888888863 67999999999999988887654 211111 111111221 1 111
Q ss_pred ---hcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEe
Q 023827 226 ---AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCL 267 (276)
Q Consensus 226 ---a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~ 267 (276)
-++|.++ +-.|+.+.++...+|.+.+.+.+-|+++-..++
T Consensus 130 ghgd~~~~vl--~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~ 172 (352)
T PRK07119 130 GHGDYRLIVL--APSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV 172 (352)
T ss_pred CCCCcceEEE--eCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh
Confidence 2345555 456899999999999998888888999887774
No 157
>PRK08611 pyruvate oxidase; Provisional
Probab=94.19 E-value=0.52 Score=46.99 Aligned_cols=106 Identities=14% Similarity=0.044 Sum_probs=70.6
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.+.+. ++-..+++..|=|.++. --++..|..-++|+|+|.-.-....... ......|..++++.+--.
T Consensus 58 mAdgyar~t---g~~gv~~~t~GPG~~N~---l~gla~A~~~~~Pvl~ItG~~~~~~~~~--~~~q~~d~~~l~~~itk~ 129 (576)
T PRK08611 58 AAAAYAKLT---GKIGVCLSIGGPGAIHL---LNGLYDAKMDHVPVLALAGQVTSDLLGT--DFFQEVNLEKMFEDVAVY 129 (576)
T ss_pred HHHHHHHHh---CCceEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCcccccCC--CCccccCHHHHhhcccce
Confidence 455555443 33455566668888863 2357788889999999997654332111 112223566777776655
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
..+++ +++++.+++.+|+..+...+||+.|++-.
T Consensus 130 ~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP~ 163 (576)
T PRK08611 130 NHQIM--SAENLPEIVNQAIRTAYEKKGVAVLTIPD 163 (576)
T ss_pred eEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCh
Confidence 66664 78889999999988887788999998743
No 158
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=94.18 E-value=0.18 Score=47.37 Aligned_cols=114 Identities=18% Similarity=0.173 Sum_probs=71.0
Q ss_pred cccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHH--HHHHHHHHCCCCEEEEEEeCCccc--cccccCccCCc
Q 023827 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFH--AALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSD 218 (276)
Q Consensus 143 g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~--Eal~~A~~~~Lpvi~vv~nN~~~~--~~~~~~~~~~~ 218 (276)
..=|.++++|.|+.+|- .++.+++.--.++.. .+. -+|.....|++|++++|-.-+.-- +.|.+..+ ..
T Consensus 33 ~~E~~av~iaaG~~lat-----G~~~~v~mQnSGlGn-~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~~-G~ 105 (361)
T TIGR03297 33 ANEGAAVGLAAGAYLAT-----GKRAAVYMQNSGLGN-AVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQ-GR 105 (361)
T ss_pred CCchHHHHHHHHHHHhc-----CCccEEEEecCchhh-hhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhhHH-hH
Confidence 44677888899998883 234444443333311 111 112224668999999997666431 12222111 23
Q ss_pred chhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 219 GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 219 ~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
-..++.++++++...++ .|.++..+++.+|.+++.+.++|+.+-+
T Consensus 106 ~t~~lL~~~~i~~~~~~-~~~~~~~~~~~~a~~~~~~~~~p~a~l~ 150 (361)
T TIGR03297 106 ITLSLLDALEIPWEVLS-TDNDEALAQIERALAHALATSRPYALVV 150 (361)
T ss_pred HHHHHHHHcCCCEEECC-CChHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 34578899999999985 3556777788888888878889987655
No 159
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=94.12 E-value=0.5 Score=46.81 Aligned_cols=108 Identities=16% Similarity=0.169 Sum_probs=70.0
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|-|.+.+. ++-.++++..|=|.++. --++..|..-++|+|+|.-.................|...+++.+--.
T Consensus 55 mAdgyar~t---g~~gv~~~t~GPG~~N~---~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~ 128 (554)
T TIGR03254 55 AAAAAGFLT---QKPGVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKA 128 (554)
T ss_pred HHHHHHHHh---CCCEEEEEccCccHHhH---HHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhhee
Confidence 455555543 33456666668888863 235778888999999998654432110011112233566777777666
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEVKC 266 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t 266 (276)
..+++ +++++.+.+.+|++.+..+ .||+.|++-.
T Consensus 129 ~~~v~--~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~ 163 (554)
T TIGR03254 129 AYRVL--RAEDIGIGIARAIRTAVSGRPGGVYLDLPA 163 (554)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 77775 7888888888888877765 3789998753
No 160
>PRK07524 hypothetical protein; Provisional
Probab=94.06 E-value=0.62 Score=45.89 Aligned_cols=108 Identities=18% Similarity=0.061 Sum_probs=70.0
Q ss_pred chhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCc-cCCcchhhhHhhcC
Q 023827 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ-FRSDGAVVKGRAYG 228 (276)
Q Consensus 150 ~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~-~~~~~~~~~a~a~G 228 (276)
-+|-|.|... ++-.++++..|=|.++. .-++..|..-++|+|+|.-............. ....|...+++.+-
T Consensus 53 ~mAdgyar~t---g~~gv~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~t 126 (535)
T PRK07524 53 FMADGYARVS---GKPGVCFIITGPGMTNI---ATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVA 126 (535)
T ss_pred HHHHHHHHHh---CCCeEEEECCCccHHHH---HHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhc
Confidence 3455555443 33356666668888863 24577888899999999864432211100001 11235667788777
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEE
Q 023827 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEVK 265 (276)
Q Consensus 229 ~~~~~vdg~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~ 265 (276)
-...+++ +++++.+.+.+|++.++.+ .||+.|++-
T Consensus 127 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (535)
T PRK07524 127 AFSHTLM--SAEDLPEVLARAFAVFDSARPRPVHIEIP 162 (535)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 6677775 7889999999999888865 589999875
No 161
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=94.02 E-value=0.56 Score=46.85 Aligned_cols=105 Identities=15% Similarity=0.100 Sum_probs=66.6
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|-|.+.+. ++-.++++..|=|.++. .-++..|..-++|+|+|.-.-..... ........|...+++.+--.
T Consensus 58 ~Adgyar~t---g~~gv~~~t~GPG~~n~---~~gi~~A~~~~~Pvl~I~g~~~~~~~--~~~~~q~~d~~~l~~~~tk~ 129 (588)
T PRK07525 58 MADGYTRVT---GRMGMVIGQNGPGITNF---VTAVATAYWAHTPVVLVTPQAGTKTI--GQGGFQEAEQMPMFEDMTKY 129 (588)
T ss_pred HHHHHHHHh---CCCEEEEEcCCccHHHH---HHHHHHHhhcCCCEEEEeCCCCcccC--CCCCCcccchhhhhhhheeE
Confidence 455555443 23455666668888863 24577888889999999832221100 00111122455666665445
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVK 265 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~ 265 (276)
..++ .+++++...+++|++.++...||+.|++-
T Consensus 130 ~~~i--~~~~~~~~~i~rA~~~A~~~~GPV~i~iP 162 (588)
T PRK07525 130 QEEV--RDPSRMAEVLNRVFDKAKRESGPAQINIP 162 (588)
T ss_pred EEEC--CCHHHHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 5555 47888999999999888888899999975
No 162
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=94.01 E-value=0.41 Score=45.32 Aligned_cols=110 Identities=17% Similarity=0.254 Sum_probs=72.3
Q ss_pred cccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCcc-ccccccCccCCcchh-hhH
Q 023827 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA-ISTPISDQFRSDGAV-VKG 224 (276)
Q Consensus 147 ~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~-~~~~~~~~~~~~~~~-~~a 224 (276)
.++.+|+|++++ ..++++.+-=+++.- .+|.+.+++-.++|+|+++.+...- ..-|+.. ...|+. .+.
T Consensus 59 aA~~~a~GAs~a------G~Ra~TaTSg~Gl~l--m~E~~~~a~~~e~P~Viv~~~R~gp~tg~p~~~--~q~D~~~~~~ 128 (376)
T PRK08659 59 ASMAAVIGASWA------GAKAMTATSGPGFSL--MQENIGYAAMTETPCVIVNVQRGGPSTGQPTKP--AQGDMMQARW 128 (376)
T ss_pred HHHHHHHhHHhh------CCCeEeecCCCcHHH--HHHHHHHHHHcCCCEEEEEeecCCCCCCCCCCc--CcHHHHHHhc
Confidence 346778888887 456777665555542 5688999999999998888775421 1112211 112222 233
Q ss_pred hhcC-ceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 225 RAYG-VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 225 ~a~G-~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
.++| .+.+.....|+.+.+.....|.+.+.+.+-|+++-...
T Consensus 129 ~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~ 171 (376)
T PRK08659 129 GTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADE 171 (376)
T ss_pred ccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEech
Confidence 3333 23244455689999999999999888888899988776
No 163
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=93.61 E-value=0.73 Score=45.83 Aligned_cols=107 Identities=17% Similarity=0.179 Sum_probs=67.7
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|-|.+... ++-..+++..|=|.++. --++..|..-++|+|+|+-.-...............|...+++.+--.
T Consensus 62 mAdgyar~t---g~~gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk~ 135 (569)
T PRK09259 62 AAAAAGFLT---QKPGVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFCKA 135 (569)
T ss_pred HHHHHHHHh---CCCEEEEEcCCccHHHH---HHHHHHHHhcCCCEEEEEccCCcccccccCCCccccchhhhhhhheee
Confidence 344554442 23445566668888863 235778888999999998654322100001112223556677776666
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEVK 265 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~ 265 (276)
..+|+ +++++...+.+|++.+..+ .||+.|++-
T Consensus 136 s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 169 (569)
T PRK09259 136 AFRVN--RAEDIGIGVARAIRTAVSGRPGGVYLDLP 169 (569)
T ss_pred eEEcC--CHHHHHHHHHHHHHHhhhCCCCcEEEEeC
Confidence 66664 7888998898988887765 489999875
No 164
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=93.56 E-value=0.13 Score=45.23 Aligned_cols=108 Identities=19% Similarity=0.206 Sum_probs=66.3
Q ss_pred cchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCcccc-ccccCccCCcchhhhHhhc
Q 023827 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS-TPISDQFRSDGAVVKGRAY 227 (276)
Q Consensus 149 l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~-~~~~~~~~~~~~~~~a~a~ 227 (276)
+.+++|++++ ..++++..-=.+++ -..|.|.+++-.++|+++++.+-.-... .++.. ...|+. .++-+
T Consensus 49 ~~~~~GAs~a------G~ra~t~ts~~Gl~--lm~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~~~--~q~D~~-~~~d~ 117 (230)
T PF01855_consen 49 MEAAIGASAA------GARAMTATSGPGLN--LMAEPLYWAAGTELPIVIVVVQRAGPSPGLSTQP--EQDDLM-AARDS 117 (230)
T ss_dssp HHHHHHHHHT------T--EEEEEECCHHH--HHCCCHHHHHHTT--EEEEEEEB---SSSB--SB---SHHHH-HTTTS
T ss_pred HHHHHHHHhc------CCceEEeecCCccc--ccHhHHHHHHHcCCCEEEEEEECCCCCCCCcCcC--ChhHHH-HHHhc
Confidence 5667888887 34566655444453 2456788999999999888876543222 11111 112222 23467
Q ss_pred CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 023827 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSF 269 (276)
Q Consensus 228 G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 269 (276)
||.++.. .|+.+.++....|.+.+.+..-|+++-...++.
T Consensus 118 ~~~vl~p--~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~ 157 (230)
T PF01855_consen 118 GWIVLAP--SSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC 157 (230)
T ss_dssp S-EEEE----SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC
T ss_pred CeEEEeC--CCHHHHHHHHHHHHHHHHHHCCCEEEEechhhh
Confidence 8887755 488999998999998888889999998888776
No 165
>PRK08266 hypothetical protein; Provisional
Probab=93.54 E-value=0.77 Score=45.28 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=67.8
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccC-CcchhhhHhhcCc
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGV 229 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~-~~~~~~~a~a~G~ 229 (276)
+|.|.+... ++-.++++..|=|.++. .-++..|..-+.|+|+|+-.-..........+.. ..|...+++.+--
T Consensus 58 ~A~gyar~t---g~~~v~~~t~GpG~~N~---~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk 131 (542)
T PRK08266 58 MAFGYARST---GRPGVCSVVPGPGVLNA---GAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATLRSFTK 131 (542)
T ss_pred HHHHHHHHh---CCCeEEEECCCCcHHHH---HHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecccHhhHHhhhcc
Confidence 455655543 22345555568888863 2457788889999999985322111000001111 1356677777666
Q ss_pred eEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEEe
Q 023827 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEVKCL 267 (276)
Q Consensus 230 ~~~~vdg~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t~ 267 (276)
...+++ +++++.+.+++|++.++.+ .||+.|++-.+
T Consensus 132 ~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 132 WAERIE--HPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 666675 6788888888888877764 58999988543
No 166
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=93.51 E-value=0.65 Score=46.26 Aligned_cols=106 Identities=15% Similarity=0.093 Sum_probs=67.0
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|-|.+... ++-.++++..|=|.++. --++..|..-+.|+|+|.-.-..... ........|...+++.+--.
T Consensus 54 ~Adgyar~t---g~~gv~~~t~GPG~~N~---~~gla~A~~~~~Pvl~I~g~~~~~~~--~~~~~Q~~d~~~l~~~vtk~ 125 (579)
T TIGR03457 54 MADGFARVT---GRMSMVIGQNGPGVTNC---VTAIAAAYWAHTPVVIVTPEAGTKTI--GLGGFQEADQLPMFQEFTKY 125 (579)
T ss_pred HHHHHHHHh---CCCEEEEECCCchHHHH---HHHHHHHhhcCCCEEEEeCCCccccC--CCCCCcccchhhhhhcceeE
Confidence 445555432 33455556668888862 23577888899999999742221110 01112223555666666555
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
..++ .+++++.+.+++|++.+..++||+.|++-.
T Consensus 126 ~~~v--~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 159 (579)
T TIGR03457 126 QGHV--RHPSRMAEVLNRCFERAWREMGPAQLNIPR 159 (579)
T ss_pred EEec--CCHHHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 5566 478889999999988888888999999853
No 167
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=93.33 E-value=0.84 Score=45.90 Aligned_cols=105 Identities=20% Similarity=0.166 Sum_probs=67.3
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.|.. .++-.++++..|=|.++. .-++..|..-+.|+|+|.-+-..... ........|...+++.+--.
T Consensus 75 aA~gyar~---tgk~gv~~~t~GPG~~n~---l~gl~~A~~d~~Pvl~i~G~~~~~~~--~~~~~Qe~d~~~~~~~vtk~ 146 (616)
T PRK07418 75 AADGYARA---TGKVGVCFGTSGPGATNL---VTGIATAQMDSVPMVVITGQVPRPAI--GTDAFQETDIFGITLPIVKH 146 (616)
T ss_pred HHHHHHHH---hCCCeEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCCcccc--CCCCcccccHHHHhhhccee
Confidence 45555443 233455666668888863 23577888899999999864332110 01112223556666665544
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVK 265 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~ 265 (276)
..+|+ +++++..++.+|++.+..++ ||+.|++-
T Consensus 147 ~~~v~--~~~~i~~~l~~A~~~A~~~~~GPv~l~iP 180 (616)
T PRK07418 147 SYVVR--DPSDMARIVAEAFHIASSGRPGPVLIDIP 180 (616)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecc
Confidence 55664 78899999999998888776 99999875
No 168
>PRK07064 hypothetical protein; Provisional
Probab=93.22 E-value=1.1 Score=44.31 Aligned_cols=108 Identities=18% Similarity=0.161 Sum_probs=67.5
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCc-cccccccCccCCcchhhhHhhcCc
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AISTPISDQFRSDGAVVKGRAYGV 229 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~-~~~~~~~~~~~~~~~~~~a~a~G~ 229 (276)
+|.|.|.+. ++-.++++..|=|.++. .-++..|..-+.|+|+|+-+-.- .+...........|..++++.+=-
T Consensus 56 ~A~gyar~t---g~~~v~~~t~GpG~~N~---~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk 129 (544)
T PRK07064 56 MADAHARVS---GGLGVALTSTGTGAGNA---AGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSK 129 (544)
T ss_pred HHHHHHHhc---CCCeEEEeCCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhcc
Confidence 455555543 33455666668888863 24577888899999999864221 111100000112356667776655
Q ss_pred eEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEE
Q 023827 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEVKC 266 (276)
Q Consensus 230 ~~~~vdg~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t 266 (276)
...+++ +++++.+++++|++.+..+ .||+.|++-.
T Consensus 130 ~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 165 (544)
T PRK07064 130 AAFRVR--SAETALATIREAVRVALTAPTGPVSVEIPI 165 (544)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHhccCCCCcEEEEeCH
Confidence 566664 6788888888888877665 6999998753
No 169
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=93.21 E-value=0.88 Score=45.45 Aligned_cols=107 Identities=21% Similarity=0.136 Sum_probs=68.4
Q ss_pred chhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCc
Q 023827 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (276)
Q Consensus 150 ~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (276)
.+|-|.+.+. ++-..+++..|=|.++. --++..|..-+.|+|+|.-.-..... ........|...+++.+--
T Consensus 52 ~~Adgyar~t---g~~gv~~~t~GPG~~n~---l~~i~~A~~~~~Pvl~I~G~~~~~~~--~~~~~q~~d~~~l~~~~tk 123 (586)
T PRK06276 52 HAADGYARAS---GKVGVCVATSGPGATNL---VTGIATAYADSSPVIALTGQVPTKLI--GNDAFQEIDALGIFMPITK 123 (586)
T ss_pred HHHHHHHHHh---CCCEEEEECCCccHHHH---HHHHHHHHhcCCCEEEEeCCCCcccc--CCCCCccccHhhHHhhhcc
Confidence 3455555443 33455666668888862 24577888899999999853322111 1111122356667777666
Q ss_pred eEEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 023827 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVKC 266 (276)
Q Consensus 230 ~~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 266 (276)
...+++ +++++...+.+|++.+..++ ||+.|++-.
T Consensus 124 ~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (586)
T PRK06276 124 HNFQIK--KPEEIPEIFRAAFEIAKTGRPGPVHIDLPK 159 (586)
T ss_pred eEEecC--CHHHHHHHHHHHHHHhcCCCCCcEEEEcCh
Confidence 666664 67889999999988877664 899998863
No 170
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.18 E-value=0.8 Score=45.60 Aligned_cols=106 Identities=17% Similarity=0.166 Sum_probs=70.1
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|-|.+... ++-.++++..|=|.++. --++..|...+.|+|+|.-.-...... ...+...|...+++.+=-.
T Consensus 57 mAdgYar~t---g~~gv~~~t~GPG~~n~---l~gi~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~~tk~ 128 (574)
T PRK07979 57 MADGLARAT---GEVGVVLVTSGPGATNA---ITGIATAYMDSIPLVVLSGQVATSLIG--YDAFQECDMVGISRPVVKH 128 (574)
T ss_pred HHHHHHHHh---CCceEEEECCCccHhhh---HHHHHHHhhcCCCEEEEECCCChhccC--CCCCceecHHHHhhcccce
Confidence 455555432 33456677778888863 235778888899999998654322111 1112234566677776556
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVKC 266 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 266 (276)
..+|. +++++...+++|++.++.+. ||+.|++-.
T Consensus 129 ~~~v~--~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~ 163 (574)
T PRK07979 129 SFLVK--QTEDIPQVLKKAFWLAASGRPGPVVVDLPK 163 (574)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcCh
Confidence 66664 78899999999998887764 899998744
No 171
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.16 E-value=0.78 Score=45.72 Aligned_cols=106 Identities=21% Similarity=0.168 Sum_probs=69.9
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|-|.|... ++-..+++..|=|.++. --++..|..-+.|+|+|+-....... ........|...+++.+--.
T Consensus 67 mAdgyar~t---g~~gv~~~t~GpG~~N~---~~gla~A~~~~~Pvl~I~G~~~~~~~--~~~~~q~~d~~~l~~~itk~ 138 (570)
T PRK06725 67 AAEGYARAS---GKVGVVFATSGPGATNL---VTGLADAYMDSIPLVVITGQVATPLI--GKDGFQEADVVGITVPVTKH 138 (570)
T ss_pred HHHHHHHHh---CCCeEEEECCCccHHHH---HHHHHHHhhcCcCEEEEecCCCcccc--cCCCCcccchhhhhhcccee
Confidence 455555543 33456666678887762 24577788889999999864332211 11112234666777777666
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVKC 266 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 266 (276)
..+|. +++++.+.+++|+..++.+. ||+.|++-.
T Consensus 139 ~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 173 (570)
T PRK06725 139 NYQVR--DVNQLSRIVQEAFYIAESGRPGPVLIDIPK 173 (570)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEcccc
Confidence 66674 78899999999998888764 899998753
No 172
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=93.12 E-value=1.1 Score=44.71 Aligned_cols=95 Identities=15% Similarity=0.202 Sum_probs=63.5
Q ss_pred ceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHH
Q 023827 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSA 245 (276)
Q Consensus 166 ~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a 245 (276)
.++++..|=|.++. --++..|..-+.|+|+|.-.-...... .......|...+++.+--...+|. +++++.+.
T Consensus 69 gv~~~t~GpG~~N~---~~gla~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~D~~~~~~~vtk~~~~v~--~~~~i~~~ 141 (588)
T TIGR01504 69 GVCIGTSGPAGTDM---ITGLYSASADSIPILCITGQAPRARLH--KEDFQAVDIAAIAKPVSKMAVTVR--EAALVPRV 141 (588)
T ss_pred EEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccC--CCcccccCHHHHhhhhceEEEEcC--CHHHHHHH
Confidence 34444457777752 235777888899999998644432211 111223456677777766666664 78899999
Q ss_pred HHHHHHHhHccC-CCEEEEEEEe
Q 023827 246 VHAAREMAIGEG-RPILIEVKCL 267 (276)
Q Consensus 246 ~~~a~~~~r~~~-~P~lIe~~t~ 267 (276)
+++|++.++.++ ||+.|++-.+
T Consensus 142 i~~A~~~A~~~~~GPV~l~iP~D 164 (588)
T TIGR01504 142 LQQAFHLMRSGRPGPVLIDLPFD 164 (588)
T ss_pred HHHHHHHHccCCCCeEEEEeCcc
Confidence 999998877654 8999987543
No 173
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=93.07 E-value=1.1 Score=44.37 Aligned_cols=106 Identities=16% Similarity=0.028 Sum_probs=67.0
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.|.+. ++-..+++..|=|.++. .-++..|..-+.|+|+|.-.-...... .......|..++++.+=-.
T Consensus 54 mAdgyar~t---gkpgv~~~t~GPG~~N~---l~~l~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~vtk~ 125 (549)
T PRK06457 54 AASVEAKIT---GKPSACMGTSGPGSIHL---LNGLYDAKMDHAPVIALTGQVESDMIG--HDYFQEVNLTKLFDDVAVF 125 (549)
T ss_pred HHHHHHHHh---CCCeEEEeCCCCchhhh---HHHHHHHHhcCCCEEEEecCCCccccC--CCcccccchhhhhccceeE
Confidence 455555443 33445556668888863 345778888899999998653322110 1111223555666655444
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
..++. +++++.+.+++|++.+....||+.|++-.
T Consensus 126 ~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP~ 159 (549)
T PRK06457 126 NQILI--NPENAEYIIRRAIREAISKRGVAHINLPV 159 (549)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCH
Confidence 55554 67888888999988777778999999853
No 174
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=93.07 E-value=0.99 Score=44.95 Aligned_cols=107 Identities=18% Similarity=0.078 Sum_probs=68.2
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|-|.|.+. +.-.++++..|=|.++. .-++..|..-++|+|+|.-.-..... ........|...+++.+--.
T Consensus 64 ~Adgyar~t---g~~gv~~~t~GpG~~N~---~~gl~~A~~~~~Pvl~I~G~~~~~~~--~~~~~Q~~d~~~l~~~vtk~ 135 (578)
T PRK06112 64 MADGYARVS---GKVAVVTAQNGPAATLL---VAPLAEALKASVPIVALVQDVNRDQT--DRNAFQELDHIALFQSCTKW 135 (578)
T ss_pred HHHHHHHHh---CCCEEEEeCCCCcHHHH---HHHHHHHhhcCCCEEEEecCCccccC--CCCCccccChhhhhccccce
Confidence 455555543 33445556667777752 34577888899999999854322111 11112223556677777666
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEEe
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVKCL 267 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t~ 267 (276)
..+++ +++++.+.+++|+..++.+. ||+.|++-.+
T Consensus 136 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~D 171 (578)
T PRK06112 136 VRRVT--VAERIDDYVDQAFTAATSGRPGPVVLLLPAD 171 (578)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEcCHh
Confidence 66664 67888888888888877764 8999987543
No 175
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=92.95 E-value=0.97 Score=44.92 Aligned_cols=106 Identities=19% Similarity=0.093 Sum_probs=67.8
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|-|.|... +.-.++++..|=|.++. --++..|..-+.|+|+|.-.-...... .......|...+++.+--.
T Consensus 58 ~Adgyar~t---g~~gv~~~t~GpG~~N~---l~gi~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~i~~~~tk~ 129 (572)
T PRK06456 58 AADGYARAS---GVPGVCTATSGPGTTNL---VTGLITAYWDSSPVIAITGQVPRSVMG--KMAFQEADAMGVFENVTKY 129 (572)
T ss_pred HHHHHHHhh---CCCEEEEeCCCCCHHHH---HHHHHHHHhhCCCEEEEecCCCccccC--CCCccccchhhhhhcccee
Confidence 455555442 23334445568888863 245778888999999998643322111 1111223556667766666
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVKC 266 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 266 (276)
..+++ +++++.+++.+|++.++.++ ||+.|++-.
T Consensus 130 ~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 164 (572)
T PRK06456 130 VIGIK--RIDEIPQWIKNAFYIATTGRPGPVVIDIPR 164 (572)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecCh
Confidence 66664 78888899999988887765 999998753
No 176
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=92.82 E-value=0.61 Score=38.98 Aligned_cols=100 Identities=15% Similarity=0.101 Sum_probs=57.8
Q ss_pred ccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHC--------CCCEEEEEEeCCccccccccCccCCcc
Q 023827 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--------EAPVIFICRNNGWAISTPISDQFRSDG 219 (276)
Q Consensus 148 ~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~--------~Lpvi~vv~nN~~~~~~~~~~~~~~~~ 219 (276)
.++.|.|+|+. ..++++.+.=+.|..-.+.+-.+.++.+ ++|++++...-+++..++++ ...+
T Consensus 56 ~vg~AaGlA~~------G~~pi~~~~~a~Fl~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~th---s~~~ 126 (167)
T cd07036 56 IVGLAVGAAMN------GLRPIVEIMFADFALPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQH---SQSL 126 (167)
T ss_pred HHHHHHHHHHc------CCEEEEEeehHHHHHHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChhh---hhhH
Confidence 34566666664 3455554333445332222222334433 58999999666655444432 2334
Q ss_pred hhhhHhhc-CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEE
Q 023827 220 AVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (276)
Q Consensus 220 ~~~~a~a~-G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe 263 (276)
+ .+.++. |+.++.- -|+.+....++.+++ .++|+++-
T Consensus 127 ~-a~lr~iPg~~V~~P--sd~~e~~~~l~~~~~----~~~P~~~~ 164 (167)
T cd07036 127 E-AWFAHIPGLKVVAP--STPYDAKGLLKAAIR----DDDPVIFL 164 (167)
T ss_pred H-HHHhcCCCCEEEee--CCHHHHHHHHHHHHh----CCCcEEEE
Confidence 3 445544 7777654 488899999988886 36898763
No 177
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=92.73 E-value=0.91 Score=44.89 Aligned_cols=106 Identities=21% Similarity=0.201 Sum_probs=67.5
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.|... ++-.++++..|=|.++. .-++..|..-++|+|+|.-.-....... ......|...+++.+=-.
T Consensus 53 ~Adgyar~s---g~~gv~~~t~GpG~~n~---~~~l~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~tk~ 124 (548)
T PRK08978 53 AAIGYARAT---GKVGVCIATSGPGATNL---ITGLADALLDSVPVVAITGQVSSPLIGT--DAFQEIDVLGLSLACTKH 124 (548)
T ss_pred HHHHHHHHh---CCCEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCC--CCCcccchhccccCceee
Confidence 455555443 33455666668888862 3457788889999999986433221111 111123455566665555
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVKC 266 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 266 (276)
..+|+ +++++...+++|++.++.++ ||+.|++-.
T Consensus 125 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (548)
T PRK08978 125 SFLVQ--SLEELPEIMAEAFEIASSGRPGPVLVDIPK 159 (548)
T ss_pred EEEEC--CHHHHHHHHHHHHHHHhcCCCCcEEEecCh
Confidence 66664 78899999999998887764 899998753
No 178
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=92.72 E-value=1.1 Score=45.14 Aligned_cols=107 Identities=21% Similarity=0.202 Sum_probs=69.0
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.|.+. ++-..+++..|=|.++. .-++..|..-++|+|+|.-.-...... .......|...+++.+--.
T Consensus 84 ~Adgyar~t---g~~gv~~~t~GPG~~N~---l~gl~~A~~~~~PllvI~G~~~~~~~~--~~~~q~~d~~~l~~~~tk~ 155 (612)
T PRK07789 84 AAEGYAQAT---GRVGVCMATSGPGATNL---VTPIADANMDSVPVVAITGQVGRGLIG--TDAFQEADIVGITMPITKH 155 (612)
T ss_pred HHHHHHHHh---CCCEEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccC--CCcCcccchhhhhhcceeE
Confidence 455555442 33455666668888763 245777888899999998643322111 1112223566677766555
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEEe
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEVKCL 267 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t~ 267 (276)
..+|+ +++++.+.+++|+..++.+ .||+.|++-.+
T Consensus 156 s~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 191 (612)
T PRK07789 156 NFLVT--DADDIPRVIAEAFHIASTGRPGPVLVDIPKD 191 (612)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEEccc
Confidence 66664 7889999999999888766 48999988643
No 179
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=92.69 E-value=0.58 Score=46.63 Aligned_cols=112 Identities=18% Similarity=0.186 Sum_probs=72.5
Q ss_pred ccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcch-hhhHhh
Q 023827 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA-VVKGRA 226 (276)
Q Consensus 148 ~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~-~~~a~a 226 (276)
++.+|+|+++| ..++++.+-=.+++ -.+|.+.+|+-..+|+|+++.+-.- .+++........|+ ..+..+
T Consensus 249 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R~g-pstg~~t~~eq~D~~~~~~~~ 319 (562)
T TIGR03710 249 AINMAIGASYA------GARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQRGG-PSTGLPTKTEQSDLLFALYGG 319 (562)
T ss_pred HHHHHHhHHhc------CCceeecCCCCChh--HhHHHHhHHHhccCCEEEEEcccCC-CCCCCCCCccHHHHHHHhcCC
Confidence 35678888887 44566666555665 3678999999999998877765532 22211111111222 122221
Q ss_pred ---cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 227 ---YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 227 ---~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
++|.++ ...|+.++++...+|.+.+.+..-|+++-...+..+
T Consensus 320 hgd~~~ivl--~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~ 364 (562)
T TIGR03710 320 HGEFPRIVL--APGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLAN 364 (562)
T ss_pred CCCcCceEE--cCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhC
Confidence 345554 556899999999999998888899999988877533
No 180
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.67 E-value=1 Score=44.84 Aligned_cols=107 Identities=19% Similarity=0.189 Sum_probs=70.0
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|-|.|... ++-.++++..|=|.++. .-++..|..-+.|+|+|.-.-...... .......|...+++.+=-.
T Consensus 57 mAdgyar~t---g~~gv~~vt~GPG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~itk~ 128 (574)
T PRK06466 57 MADGYARAT---GKTGVVLVTSGPGATNA---ITGIATAYMDSIPMVVLSGQVPSTLIG--EDAFQETDMVGISRPIVKH 128 (574)
T ss_pred HHHHHHHHh---CCCEEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCCccccC--CCcccccchhhhhhcccee
Confidence 455555543 33455666668888862 245778888999999998654432211 1112223566677766555
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEEe
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVKCL 267 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t~ 267 (276)
+.+|+ +++++...+++|+..++.+. ||+.|++-.+
T Consensus 129 s~~v~--~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 129 SFMVK--HASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 66665 78889999999998887664 8999987543
No 181
>PRK08322 acetolactate synthase; Reviewed
Probab=92.67 E-value=1.2 Score=43.95 Aligned_cols=106 Identities=15% Similarity=0.127 Sum_probs=67.4
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.|.+. ++-..+++..|=|.++. .-++..|..-++|+|+|.-+-...... .......|...+++.+--.
T Consensus 53 ~A~gyar~t---g~~gv~~~t~GpG~~N~---~~~i~~A~~~~~Pll~i~g~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 124 (547)
T PRK08322 53 MAATYGRLT---GKAGVCLSTLGPGATNL---VTGVAYAQLGGMPMVAITGQKPIKRSK--QGSFQIVDVVAMMAPLTKW 124 (547)
T ss_pred HHHHHHHhh---CCCEEEEECCCccHhHH---HHHHHHHhhcCCCEEEEeccccccccC--CCccccccHHHHhhhheeE
Confidence 455555543 23445555668888863 245777888899999998543322111 1112223566677766555
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVKC 266 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 266 (276)
..+|. +++++.+.+.+|++.+..++ ||+.|++-.
T Consensus 125 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (547)
T PRK08322 125 TRQIV--SPDNIPEVVREAFRLAEEERPGAVHLELPE 159 (547)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcCh
Confidence 55664 78888899999988887764 899998753
No 182
>PRK11269 glyoxylate carboligase; Provisional
Probab=92.67 E-value=1.1 Score=44.73 Aligned_cols=107 Identities=15% Similarity=0.163 Sum_probs=68.0
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.|.+.. ++-..+++..|=|.++. --++..|..-+.|+|+|.-.-....... ......|...+++.+=-.
T Consensus 57 mAdGYar~t~--g~~gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~~~l~~~itk~ 129 (591)
T PRK11269 57 MAEGYTRATA--GNIGVCIGTSGPAGTDM---ITGLYSASADSIPILCITGQAPRARLHK--EDFQAVDIESIAKPVTKW 129 (591)
T ss_pred HHHHHHHHcC--CCcEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCC--CcccccChhhHhhcceeE
Confidence 4555555431 23345555668877762 2357778888999999986544322111 112223556677765555
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVKC 266 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 266 (276)
..+| .+++++..++++|++.++.+. ||+.|++-.
T Consensus 130 s~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 164 (591)
T PRK11269 130 AVTV--REPALVPRVFQQAFHLMRSGRPGPVLIDLPF 164 (591)
T ss_pred EEEc--CCHHHHHHHHHHHHHHHhhCCCCeEEEEeCh
Confidence 5566 478899999999998887664 899998863
No 183
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=92.63 E-value=1.1 Score=44.35 Aligned_cols=106 Identities=19% Similarity=0.180 Sum_probs=68.8
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.+... ++-..+++..|=|.++. --++..|..-++|||+|.-.-...... .......|...+++.+--.
T Consensus 54 ~Adgyar~t---g~~gv~~~t~GpG~~n~---l~~i~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 125 (558)
T TIGR00118 54 AADGYARAS---GKVGVVLVTSGPGATNL---VTGIATAYMDSIPMVVFTGQVPTSLIG--SDAFQEADILGITMPITKH 125 (558)
T ss_pred HHHHHHHHh---CCCEEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEecCCCccccC--CCCCcccChhhhhcCccce
Confidence 355555443 33456666668888762 345778888999999998643221111 1111223556677777666
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVKC 266 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 266 (276)
..+++ +++++...+.+|++.+...+ ||+.|++-.
T Consensus 126 ~~~v~--~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~ 160 (558)
T TIGR00118 126 SFQVK--SAEDIPRIIKEAFHIATTGRPGPVLVDLPK 160 (558)
T ss_pred eEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEcCh
Confidence 77775 68889999999988777764 899998753
No 184
>PLN02470 acetolactate synthase
Probab=92.63 E-value=0.99 Score=45.08 Aligned_cols=106 Identities=21% Similarity=0.180 Sum_probs=69.2
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|-|.+... ++-..+++..|=|.++. .-++..|..-+.|+|+|.-.-..... ........|..++++.+--.
T Consensus 66 ~Adgyar~t---g~~gv~~~t~GPG~~N~---l~gia~A~~~~~Pvl~I~G~~~~~~~--~~~~~q~~d~~~l~~~~tk~ 137 (585)
T PLN02470 66 AAEGYAKAS---GKVGVCIATSGPGATNL---VTGLADALLDSVPLVAITGQVPRRMI--GTDAFQETPIVEVTRSITKH 137 (585)
T ss_pred HHHHHHHHh---CCCEEEEECCCccHHHH---HHHHHHHHhcCCcEEEEecCCChhhc--CCCcCcccchhhhhhhheEE
Confidence 455555543 33456666778888862 24577788889999999854332111 01112223455666666555
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVKC 266 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 266 (276)
..+|+ +++++.+++++|++.++.++ ||+.|++-.
T Consensus 138 ~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 172 (585)
T PLN02470 138 NYLVM--DVEDIPRVIREAFFLASSGRPGPVLVDIPK 172 (585)
T ss_pred EEEcC--CHHHHHHHHHHHHHHhcCCCCCeEEEEecC
Confidence 66664 78899999999998888765 999999854
No 185
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=92.59 E-value=1.2 Score=42.43 Aligned_cols=111 Identities=21% Similarity=0.244 Sum_probs=74.6
Q ss_pred ccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhc
Q 023827 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (276)
Q Consensus 148 ~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (276)
++.+|+|++++ ..++++.+-=.+++ -.+|.|.+|+-..+|+|+++.|-... ++........|+.. .+--
T Consensus 61 A~~~aiGAs~a------GaRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~~~~R~~p--~~~~~~~~q~D~~~-~~d~ 129 (390)
T PRK08366 61 AMAACIGASAA------GARAFTATSAQGLA--LMHEMLHWAAGARLPIVMVDVNRAMA--PPWSVWDDQTDSLA-QRDT 129 (390)
T ss_pred HHHHHHHHHhh------CCCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEEEeccCCC--CCCCCcchhhHHHH-Hhhc
Confidence 36678888887 45677777666665 35789999999999988877644322 22211111223221 2223
Q ss_pred CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 228 G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
||-.+. ..|+.+.+.....|.+.+.+..-|+++-...|+...
T Consensus 130 g~i~~~--~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh 171 (390)
T PRK08366 130 GWMQFY--AENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSH 171 (390)
T ss_pred CEEEEe--CCCHHHHHHHHHHHHHHHHHHCCCEEEEecCccccc
Confidence 664443 368899999888999888888899999887777654
No 186
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=92.49 E-value=1.1 Score=44.99 Aligned_cols=107 Identities=14% Similarity=-0.012 Sum_probs=66.4
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcC-c
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG-V 229 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G-~ 229 (276)
+|-|.|.+. ++-..+++..|=|.++. --++..|..-+.|+|+|.-.=..... ........|..++++.+- .
T Consensus 57 ~Adgyar~t---g~~gv~~~t~GPG~~n~---~~gi~~A~~d~vPvl~I~G~~~~~~~--~~~~~q~~d~~~l~~~vt~k 128 (597)
T PRK08273 57 MAVAHAKFT---GEVGVCLATSGPGAIHL---LNGLYDAKLDHVPVVAIVGQQARAAL--GGHYQQEVDLQSLFKDVAGA 128 (597)
T ss_pred HHHHHHHHh---CCCEEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCchhhc--CCCCCCccCHHHHHHHHHHH
Confidence 455555443 23345556668888863 23577788889999999853221111 111122234555666554 3
Q ss_pred eEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEe
Q 023827 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCL 267 (276)
Q Consensus 230 ~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~ 267 (276)
...+++ +++++.+.+++|++.+..++||+.|++-.+
T Consensus 129 ~~~~v~--~~~~~~~~l~~A~~~A~~~~gPV~i~iP~D 164 (597)
T PRK08273 129 FVQMVT--VPEQLRHLVDRAVRTALAERTVTAVILPND 164 (597)
T ss_pred HeeEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence 444554 678888888888888887889999987543
No 187
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=92.42 E-value=0.72 Score=46.50 Aligned_cols=103 Identities=10% Similarity=0.073 Sum_probs=63.0
Q ss_pred ccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccc-cccccCccCCcchhhhHhh
Q 023827 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRA 226 (276)
Q Consensus 148 ~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~-~~~~~~~~~~~~~~~~a~a 226 (276)
.+++|.|+|+. ..++|+.+ =+.|.+-.+.+-.+.++..++|+++++...++.. .++++. ...|++-+..-
T Consensus 364 ~vg~AaGlA~~------G~~Pvv~~-~a~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~--~~~dia~lr~i 434 (617)
T TIGR00204 364 AVTFAAGMAIE------GYKPFVAI-YSTFLQRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQ--GAFDISYLRCI 434 (617)
T ss_pred HHHHHHHHHHC------CCEEEEEe-cHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCcccc--cchHHHHHhcC
Confidence 34566666653 33444444 4567553444444667889999999998777642 233332 23445433333
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 227 ~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
-|+.++.- .|+.++...++.|++. .++|++|..
T Consensus 435 Pgl~V~~P--sd~~e~~~~l~~a~~~---~~~Pv~ir~ 467 (617)
T TIGR00204 435 PNMVIMAP--SDENELRQMLYTGYHY---DDGPIAVRY 467 (617)
T ss_pred CCcEEEee--CCHHHHHHHHHHHHhC---CCCCEEEEE
Confidence 47766643 4788899999888863 348988754
No 188
>PRK07586 hypothetical protein; Validated
Probab=92.33 E-value=1.1 Score=43.87 Aligned_cols=107 Identities=19% Similarity=0.120 Sum_probs=67.7
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|-|.|... ++-.++++..|=|.++. .-++..|..-+.|+|+|.-.-...... .......|..++++.+--.
T Consensus 54 mAdgyar~t---g~~gv~~~t~GPG~~N~---~~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~vtk~ 125 (514)
T PRK07586 54 AADGYARMA---GKPAATLLHLGPGLANG---LANLHNARRARTPIVNIVGDHATYHRK--YDAPLTSDIEALARPVSGW 125 (514)
T ss_pred HHHHHHHHH---CCCEEEEecccHHHHHH---HHHHHHHHhcCCCEEEEecCCchhccC--CCcccccchhhhhccccce
Confidence 455555442 33345556668887652 234667888899999998653322111 1111223566677766555
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEEe
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEVKCL 267 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t~ 267 (276)
..+|. +++++.+.+++|++.++.+ .||+.|++-.+
T Consensus 126 ~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~D 161 (514)
T PRK07586 126 VRRSE--SAADVAADAAAAVAAARGAPGQVATLILPAD 161 (514)
T ss_pred eeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence 55564 7888999999999888876 58999998544
No 189
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=92.33 E-value=1.2 Score=44.32 Aligned_cols=107 Identities=18% Similarity=0.189 Sum_probs=66.8
Q ss_pred chhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCc
Q 023827 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (276)
Q Consensus 150 ~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (276)
-+|.|.+.+. ++-.++++..|=|.++. .-++..|..-+.|+|+|.-.-...... .......|...+++.+=-
T Consensus 67 ~~A~gyar~t---g~~gv~~~t~GPG~~N~---~~gl~~A~~~~~Pvl~ItG~~~~~~~~--~~~~q~~d~~~l~~~~tk 138 (571)
T PRK07710 67 HAAEGYARIS---GKPGVVIATSGPGATNV---VTGLADAMIDSLPLVVFTGQVATSVIG--SDAFQEADIMGITMPVTK 138 (571)
T ss_pred HHHHHHHHHh---CCCeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEeccCCccccC--CCCccccchhhhhhcccc
Confidence 3455555543 23345555668887762 245777888899999998654432111 111122355566666544
Q ss_pred eEEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 023827 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVKC 266 (276)
Q Consensus 230 ~~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 266 (276)
...+| .+++++...+++|++.++.++ ||+.|++-.
T Consensus 139 ~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 174 (571)
T PRK07710 139 HNYQV--RKASDLPRIIKEAFHIATTGRPGPVLIDIPK 174 (571)
T ss_pred eEEec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcCh
Confidence 45555 478888889999988887664 899998864
No 190
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=92.22 E-value=1.4 Score=43.62 Aligned_cols=105 Identities=13% Similarity=0.117 Sum_probs=65.1
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.|.+. ++-..+++..|=|.++. .-++..|..-++|||+|.-.-...... .......|...+++.+=-.
T Consensus 61 ~Adgyar~t---g~~gv~~~t~GpG~~N~---~~gi~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~l~~~~tk~ 132 (557)
T PRK08199 61 MAEAYGKLT---GRPGICFVTRGPGATNA---SIGVHTAFQDSTPMILFVGQVARDFRE--REAFQEIDYRRMFGPMAKW 132 (557)
T ss_pred HHHHHHHhc---CCCEEEEeCCCccHHHH---HHHHHHHhhcCCCEEEEecCCccccCC--CCcccccCHHHhhhhhhce
Confidence 455555542 23445566668888862 345778888899999998543221110 1111123455566655444
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEVK 265 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~ 265 (276)
..+| .+++++.+.+.+|++.+..+ .||+.|++-
T Consensus 133 ~~~v--~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP 166 (557)
T PRK08199 133 VAEI--DDAARIPELVSRAFHVATSGRPGPVVLALP 166 (557)
T ss_pred eeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 5555 47888899999998888776 489999874
No 191
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.12 E-value=1.2 Score=44.72 Aligned_cols=106 Identities=19% Similarity=0.214 Sum_probs=68.5
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|-|.+... ++-..+++..|=|.++. .-++..|...+.|+|+|.-.-....... ......|...+++.+--.
T Consensus 64 mAdgyar~t---g~~gv~~~t~GPG~~N~---l~gia~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~vtk~ 135 (595)
T PRK09107 64 AAEGYARST---GKPGVVLVTSGPGATNA---VTPLQDALMDSIPLVCITGQVPTHLIGS--DAFQECDTVGITRPCTKH 135 (595)
T ss_pred HHHHHHHHh---CCCEEEEECCCccHhHH---HHHHHHHhhcCCCEEEEEcCCChhhcCC--CCCcccchhhhhhhheEE
Confidence 455555432 33455666668888863 2357788889999999986544322111 112223555666665555
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVKC 266 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 266 (276)
..+|+ +++++.+.+.+|++.++.+. ||+.|++-.
T Consensus 136 ~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 170 (595)
T PRK09107 136 NWLVK--DVNDLARVIHEAFHVATSGRPGPVVVDIPK 170 (595)
T ss_pred EEEeC--CHHHHHHHHHHHHHHhcCCCCceEEEecCC
Confidence 55664 78899999999998888774 899998743
No 192
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=91.96 E-value=1.8 Score=43.21 Aligned_cols=107 Identities=14% Similarity=0.009 Sum_probs=66.0
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|-|.+.. .++-..+++..|=|.++- .-++..|...++|+|+|.-.-..... ........|...+++.+--.
T Consensus 53 ~Adgyar~---tgk~gv~~~t~GPG~~n~---~~~i~~A~~~~~Pvl~I~G~~~~~~~--~~~~~q~id~~~~~~~vtk~ 124 (575)
T TIGR02720 53 AAAADAKL---TGKIGVCFGSAGPGATHL---LNGLYDAKEDHVPVLALVGQVPTTGM--NMDTFQEMNENPIYADVAVY 124 (575)
T ss_pred HHHHHHHh---hCCceEEEeCCCCcHHHH---HHHHHHHhhcCCCEEEEecCCccccC--CCCCcceechhhhhhhcceE
Confidence 34454443 334456666668888762 34577888899999999865432211 11111222444556655544
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEe
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCL 267 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~ 267 (276)
..++. +++++...+.+|++.+...+||+.|++-.+
T Consensus 125 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 159 (575)
T TIGR02720 125 NRTAM--TAESLPHVIDEAIRRAYAHNGVAVVTIPVD 159 (575)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEECcc
Confidence 45553 577777778888777777789999988644
No 193
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=91.92 E-value=1.6 Score=43.39 Aligned_cols=105 Identities=18% Similarity=0.177 Sum_probs=66.0
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.|.+. +.-.++++..|=|.++. .-++..|...+.|+|+|.-.-...... .......|...+++.+--.
T Consensus 66 ~Adgyar~t---g~~gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 137 (564)
T PRK08155 66 IAQGMARTT---GKPAVCMACSGPGATNL---VTAIADARLDSIPLVCITGQVPASMIG--TDAFQEVDTYGISIPITKH 137 (564)
T ss_pred HHHHHHHHc---CCCeEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeccCCccccc--CCCccccchhhhhhccceE
Confidence 455666543 22334455558887762 235777888999999998543322111 1111223455566655545
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEVK 265 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~ 265 (276)
..+++ +++++...+++|++.++.. .||+.|++-
T Consensus 138 ~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~i~iP 171 (564)
T PRK08155 138 NYLVR--DIEELPQVISDAFRIAQSGRPGPVWIDIP 171 (564)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 55664 7889999999999888776 489999984
No 194
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=91.54 E-value=1.8 Score=42.72 Aligned_cols=107 Identities=19% Similarity=0.043 Sum_probs=65.7
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|-|.|.. .++-..+++..|=|.++. .-++..|..-+.|+|+|+-.-...... .......|...+++.+=-.
T Consensus 51 ~Adgyar~---tg~~gv~~~t~GpG~~n~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 122 (539)
T TIGR02418 51 MAQAVGRI---TGKPGVALVTSGPGCSNL---VTGLATANSEGDPVVAIGGQVKRADLL--KLTHQSMDNVALFRPITKY 122 (539)
T ss_pred HHHHHHHH---hCCceEEEECCCCCHhHH---HHHHHHHhhcCCCEEEEeCCCcccccc--cCcccccchhhhhhcceee
Confidence 44454443 233455666668888762 235777888899999998643321111 1112233455666665444
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEEe
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEVKCL 267 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t~ 267 (276)
..++ .+++++.+.+.+|++.+..+ .||+.|++-.+
T Consensus 123 ~~~i--~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~d 158 (539)
T TIGR02418 123 SAEV--QDPDALSEVVANAFRAAESGKPGAAFVSLPQD 158 (539)
T ss_pred eeec--CCHHHHHHHHHHHHHHHhcCCCCCEEEEcChh
Confidence 4555 47888888888888877766 37999987543
No 195
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=91.48 E-value=1.9 Score=38.85 Aligned_cols=84 Identities=18% Similarity=0.064 Sum_probs=58.8
Q ss_pred eEEEEECCCc--CCcchHHHHHHHHHHCCCCEEEEEEeCC---ccccc---cccCccCCcchhhhHhhcCceEEEEcCCC
Q 023827 167 CAVTYFGDGG--TSEGDFHAALNFSAVTEAPVIFICRNNG---WAIST---PISDQFRSDGAVVKGRAYGVRSIRVDGND 238 (276)
Q Consensus 167 ~vv~~~GDG~--~~~G~~~Eal~~A~~~~Lpvi~vv~nN~---~~~~~---~~~~~~~~~~~~~~a~a~G~~~~~vdg~d 238 (276)
.++.++.||. ++++...+.+.-|...++-++||+.+|. -+|.. +.........+......|++|+..|= +|
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~-~~ 244 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV-RD 244 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe-cC
Confidence 8999999999 7888877778888888996666665553 22221 11111011156678899999998765 58
Q ss_pred HHHHHHHHHHHHH
Q 023827 239 ALAIYSAVHAARE 251 (276)
Q Consensus 239 ~~~v~~a~~~a~~ 251 (276)
+.++..++..+++
T Consensus 245 ~~~lp~~l~~~lr 257 (266)
T cd01460 245 LNQLPSVLSDALR 257 (266)
T ss_pred hhHhHHHHHHHHH
Confidence 9999988887764
No 196
>PRK08617 acetolactate synthase; Reviewed
Probab=91.43 E-value=1.7 Score=43.01 Aligned_cols=94 Identities=16% Similarity=0.070 Sum_probs=61.1
Q ss_pred CceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHH
Q 023827 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYS 244 (276)
Q Consensus 165 ~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~ 244 (276)
-..+++..|=|.++. .-++..|..-+.|+|+|.-........ .......|...+++.+--...+++ +++++..
T Consensus 68 ~gv~~vt~GpG~~N~---l~gl~~A~~~~~PvlvisG~~~~~~~~--~~~~q~~d~~~l~~~~tk~~~~v~--~~~~~~~ 140 (552)
T PRK08617 68 PGVVLVTSGPGVSNL---ATGLVTATAEGDPVVAIGGQVKRADRL--KRTHQSMDNVALFRPITKYSAEVQ--DPDNLSE 140 (552)
T ss_pred CEEEEECCCCcHhHh---HHHHHHHhhcCCCEEEEecCCcccccC--CCCccccchhhhhhhhcceEEEeC--CHHHHHH
Confidence 345555568888862 235777888899999998533221111 011122345566666655566664 7888889
Q ss_pred HHHHHHHHhHccC-CCEEEEEE
Q 023827 245 AVHAAREMAIGEG-RPILIEVK 265 (276)
Q Consensus 245 a~~~a~~~~r~~~-~P~lIe~~ 265 (276)
.+++|++.+..++ ||+.|++-
T Consensus 141 ~i~~A~~~a~~~~~GPV~l~iP 162 (552)
T PRK08617 141 VLANAFRAAESGRPGAAFVSLP 162 (552)
T ss_pred HHHHHHHHHccCCCCcEEEeCh
Confidence 9999988877664 79999875
No 197
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.42 E-value=2.1 Score=42.74 Aligned_cols=106 Identities=21% Similarity=0.163 Sum_probs=66.8
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|-|.|.+. ++-..+++..|=|.++. .-++..|..-++|+|+|.-.-..... ........|...+++.+--.
T Consensus 74 ~AdgYar~t---g~~gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~l~~~itk~ 145 (587)
T PRK06965 74 AADGYARAT---GKVGVALVTSGPGVTNA---VTGIATAYMDSIPMVVISGQVPTAAI--GQDAFQECDTVGITRPIVKH 145 (587)
T ss_pred HHHHHHHHh---CCCeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCcccc--CCCCcccccHHHHhcCCcce
Confidence 455655543 23345555567777762 23577788889999999843221110 01112223555667766555
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEVKC 266 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t 266 (276)
..+|. +++++.+.+.+|++.++.+ .||+.|++-.
T Consensus 146 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 180 (587)
T PRK06965 146 NFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIPK 180 (587)
T ss_pred eEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeCh
Confidence 66665 7888888899998888876 4899998754
No 198
>PRK12474 hypothetical protein; Provisional
Probab=91.42 E-value=1.9 Score=42.33 Aligned_cols=107 Identities=18% Similarity=0.046 Sum_probs=66.7
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|-|.|.+. ++-.++++..|=|.++. .-++..|..-+.|+|+|+-........ .......|...+++.+--.
T Consensus 58 mAdgYaR~t---g~~gv~~~t~GpG~~N~---~~gl~~A~~d~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~vtk~ 129 (518)
T PRK12474 58 AADGYGRIA---GKPAVTLLHLGPGLANG---LANLHNARRAASPIVNIVGDHAVEHLQ--YDAPLTSDIDGFARPVSRW 129 (518)
T ss_pred HHHHHHHHh---CCCEEEEEccchhHhHh---HHHHHHHhhcCCCEEEEeccCchhhcC--CCCccccCHHHhhhcccce
Confidence 455555442 33455666668887752 234667888899999998643322111 1111123566666665444
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEEe
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVKCL 267 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t~ 267 (276)
..++ .+++++.+++++|++.+..+. ||++|++-.+
T Consensus 130 ~~~v--~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~D 165 (518)
T PRK12474 130 VHRS--ASAGAVDSDVARAVQAAQSAPGGIATLIMPAD 165 (518)
T ss_pred eeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 5555 478899999999988777665 8999987543
No 199
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=91.40 E-value=1.8 Score=36.17 Aligned_cols=105 Identities=14% Similarity=0.070 Sum_probs=59.9
Q ss_pred ccchhhhHHHHhhhcCCCceEEEEECCCcCCc---chHHHHHH-HHHHCCCCEEEEEEeCCcc--ccccccCccCCcchh
Q 023827 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSE---GDFHAALN-FSAVTEAPVIFICRNNGWA--ISTPISDQFRSDGAV 221 (276)
Q Consensus 148 ~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~---G~~~Eal~-~A~~~~Lpvi~vv~nN~~~--~~~~~~~~~~~~~~~ 221 (276)
.+++|+|+|++-+ ...+++..++ .|.. --..+.+. ..+..++|+. |+..-+++ ...+++ .+..+++
T Consensus 60 ~vg~a~GlA~~G~---~~~~~~~~f~--~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH--~s~~d~~ 131 (178)
T PF02779_consen 60 MVGMAAGLALAGG---LRPPVESTFA--DFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTH--HSIEDEA 131 (178)
T ss_dssp HHHHHHHHHHHSS---SEEEEEEEEG--GGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTT--SSSSHHH
T ss_pred ccceeeeeeeccc---ccceeEeecc--ccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccc--ccccccc
Confidence 3567777777631 0233444443 4433 23444454 6677889988 66655553 333332 2334444
Q ss_pred hhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 222 VKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 222 ~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
-+..--|+.++.- .|+.++...++.++++ +.++|++|-.
T Consensus 132 ~~~~iPg~~v~~P--sd~~e~~~~l~~a~~~--~~~~P~~ir~ 170 (178)
T PF02779_consen 132 ILRSIPGMKVVVP--SDPAEAKGLLRAAIRR--ESDGPVYIRE 170 (178)
T ss_dssp HHHTSTTEEEEE---SSHHHHHHHHHHHHHS--SSSSEEEEEE
T ss_pred ccccccccccccC--CCHHHHHHHHHHHHHh--CCCCeEEEEe
Confidence 4343348877754 4888999999998862 2478998764
No 200
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.30 E-value=1.8 Score=43.14 Aligned_cols=107 Identities=20% Similarity=0.179 Sum_probs=67.9
Q ss_pred chhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCc
Q 023827 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (276)
Q Consensus 150 ~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (276)
-+|-|.|... ++-.++++..|=|.++. --++..|..-+.|+|+|.-.-...... .......|...+++.+=-
T Consensus 56 ~mAdgyar~t---g~~gv~~~t~GpG~~n~---l~gia~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~itk 127 (572)
T PRK08979 56 HMADGYARAT---GKVGVVLVTSGPGATNT---ITGIATAYMDSIPMVVLSGQVPSNLIG--NDAFQECDMIGISRPVVK 127 (572)
T ss_pred HHHHHHHHHh---CCCeEEEECCCchHhHH---HHHHHHHhhcCCCEEEEecCCCccccC--CCCCcccchhHHhhhcee
Confidence 3455555543 33445555568888763 234777888899999998543322111 111222355666776655
Q ss_pred eEEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 023827 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVKC 266 (276)
Q Consensus 230 ~~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 266 (276)
...+|+ +++++...+++|++.++.++ ||+.|++-.
T Consensus 128 ~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (572)
T PRK08979 128 HSFLVK--DAEDIPEIIKKAFYIASTGRPGPVVIDLPK 163 (572)
T ss_pred EEEecC--CHHHHHHHHHHHHHHHhCCCCCcEEEecCH
Confidence 566665 78899999999998887755 899998643
No 201
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.25 E-value=2 Score=42.76 Aligned_cols=107 Identities=20% Similarity=0.205 Sum_probs=67.1
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|-|.+.+. ++-..+++..|=|.++. --++..|..-+.|+|+|.-.-...... .......|...+++.+=-.
T Consensus 57 mAdgyar~t---g~~gv~~~t~GpG~~N~---l~~i~~A~~~~~Pvlvi~G~~~~~~~~--~~~~q~~d~~~l~~~vtk~ 128 (574)
T PRK06882 57 MADGYARST---GKVGCVLVTSGPGATNA---ITGIATAYTDSVPLVILSGQVPSNLIG--TDAFQECDMLGISRPVVKH 128 (574)
T ss_pred HHHHHHHhh---CCCeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccC--CCcccccchhhhhhcccce
Confidence 455555442 33445566668887763 235777888899999998644322111 1111223556666666555
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEEe
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEVKCL 267 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t~ 267 (276)
..+|. +++++...+++|++.+..+ .||+.|++-.+
T Consensus 129 s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 129 SFIVK--NAEDIPSTIKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence 66664 7888888888888877665 48999988543
No 202
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=91.19 E-value=1.8 Score=43.02 Aligned_cols=106 Identities=18% Similarity=0.168 Sum_probs=67.2
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|-|.+... ++-..+++..|=|.++. --++..|..-++|+|+|.-.-...... .......|..++++.+--.
T Consensus 63 ~Adgyar~t---g~~gv~~~t~GPG~~n~---~~gla~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~itk~ 134 (566)
T PRK07282 63 EAEGYAKST---GKLGVAVVTSGPGATNA---ITGIADAMSDSVPLLVFTGQVARAGIG--KDAFQEADIVGITMPITKY 134 (566)
T ss_pred HHHHHHHHh---CCCeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecccccccCC--CCCccccChhchhcCCCce
Confidence 455555442 33456666678888863 235777888899999998653322110 1111123455566666555
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVKC 266 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 266 (276)
..+++ +++++.+++.+|++.++.++ ||+.|++-.
T Consensus 135 s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 169 (566)
T PRK07282 135 NYQIR--ETADIPRIITEAVHIATTGRPGPVVIDLPK 169 (566)
T ss_pred eEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEeCCh
Confidence 55664 78888889999998887764 899998754
No 203
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=91.19 E-value=1.9 Score=42.83 Aligned_cols=106 Identities=19% Similarity=0.175 Sum_probs=66.1
Q ss_pred chhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCc
Q 023827 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (276)
Q Consensus 150 ~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (276)
-+|-|.+... ++-..+++..|=|.++. --++..|..-+.|+|+|.-.-..... ........|...+++.+=-
T Consensus 59 ~~Adgyar~t---g~~~v~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~~~~~itk 130 (561)
T PRK06048 59 HAADGYARAT---GKVGVCVATSGPGATNL---VTGIATAYMDSVPIVALTGQVPRSMI--GNDAFQEADITGITMPITK 130 (561)
T ss_pred HHHHHHHHHh---CCCeEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEeccCCcccc--CCCCccccchhhhccCcce
Confidence 3455555443 33455666668888863 24577888889999999753222111 0111122355556666544
Q ss_pred eEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEE
Q 023827 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEVK 265 (276)
Q Consensus 230 ~~~~vdg~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~ 265 (276)
...+|. ++.++...+++|++.++.+ .||+.|++-
T Consensus 131 ~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP 165 (561)
T PRK06048 131 HNYLVQ--DAKDLPRIIKEAFHIASTGRPGPVLIDLP 165 (561)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEecC
Confidence 555664 7888899999998877766 489999984
No 204
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=91.11 E-value=1.4 Score=43.48 Aligned_cols=109 Identities=18% Similarity=0.114 Sum_probs=64.3
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccc---cCccC-CcchhhhHhh
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQFR-SDGAVVKGRA 226 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~---~~~~~-~~~~~~~a~a 226 (276)
+|-|.|.+. ++-.++++..|=|.++. --++..|..-++|+|+|.-+......... +.+.. ..+..++++.
T Consensus 53 ~Adgyar~t---g~~gv~~~t~GpG~~n~---~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (535)
T TIGR03394 53 AADAAARYR---GTLGVAAVTYGAGAFNM---VNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKE 126 (535)
T ss_pred HHhHHHHhh---CCceEEEEecchHHHhh---hhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhh
Confidence 345555433 33456667778888863 23577888899999999865332211000 01110 1124455565
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEe
Q 023827 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCL 267 (276)
Q Consensus 227 ~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~ 267 (276)
.--...+|. +++++.+.+++|+..+....+|+.|++-.+
T Consensus 127 vtk~~~~v~--~~~~~~~~~~~A~~~a~~~~gPv~i~iP~D 165 (535)
T TIGR03394 127 VTCDQAVLD--DPATAPAEIARVLGSARELSRPVYLEIPRD 165 (535)
T ss_pred heEEEEEeC--ChHHhHHHHHHHHHHHHHCCCCEEEEechh
Confidence 543444553 566777777777777766779999998543
No 205
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.57 E-value=2.3 Score=42.23 Aligned_cols=105 Identities=21% Similarity=0.164 Sum_probs=65.5
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|-|.|... ++-..+++..|=|.++. --++..|..-+.|+|+|.-.-..... ........|...+++.+--.
T Consensus 56 ~Adgyar~t---g~~gv~~~t~GpG~~n~---~~gla~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~~~~~~tk~ 127 (563)
T PRK08527 56 AADGYARAS---GKVGVAIVTSGPGFTNA---VTGLATAYMDSIPLVLISGQVPNSLI--GTDAFQEIDAVGISRPCVKH 127 (563)
T ss_pred HHHHHHhhh---CCCEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCcccc--CCCCCcccchhhhhhcccce
Confidence 344444432 33455666668888863 23577788889999999853221110 01111223445566666555
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVK 265 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~ 265 (276)
..+| ++++++.+++++|++.++.++ ||+.|++-
T Consensus 128 s~~v--~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP 161 (563)
T PRK08527 128 NYLV--KSIEELPRILKEAFYIARSGRPGPVHIDIP 161 (563)
T ss_pred EEEc--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 5566 488999999999998887655 79999875
No 206
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=90.50 E-value=1.6 Score=43.54 Aligned_cols=107 Identities=15% Similarity=0.143 Sum_probs=67.1
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccc------cCccCC-cchhhh
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI------SDQFRS-DGAVVK 223 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~------~~~~~~-~~~~~~ 223 (276)
+|-|.|... ++-..+++..|=|.++. --++..|..-+.|+|+|.-+-........ ...... .|...+
T Consensus 65 ~Adgyar~t---gk~gv~~~t~GPG~~N~---~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~ 138 (569)
T PRK08327 65 MAHGYALVT---GKPQAVMVHVDVGTANA---LGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGL 138 (569)
T ss_pred HHHHHHHhh---CCCeEEEEecCHHHHHH---HHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHH
Confidence 344554432 23355666668888762 34578888889999999875432211100 001112 255666
Q ss_pred HhhcCceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEE
Q 023827 224 GRAYGVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEVK 265 (276)
Q Consensus 224 a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~ 265 (276)
++.+--...+++ +++++..++.+|+..++.+ .||+.|++-
T Consensus 139 ~~~vtk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~i~iP 179 (569)
T PRK08327 139 VREYVKWDYEIR--RGDQIGEVVARAIQIAMSEPKGPVYLTLP 179 (569)
T ss_pred HhhhhhhhcccC--CHHHHHHHHHHHHHHHhcCCCCCEEEECc
Confidence 666554555554 7889999999999888765 689999875
No 207
>PRK05858 hypothetical protein; Provisional
Probab=90.42 E-value=2.7 Score=41.51 Aligned_cols=106 Identities=15% Similarity=0.060 Sum_probs=65.6
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|-|.|.+. ++-..+++..|=|.++. .-++..|..-+.|+|+|.-+-....... ......|...+++.+--.
T Consensus 57 ~AdGyar~t---g~~gv~~~t~GpG~~n~---~~~i~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~l~~~~tk~ 128 (542)
T PRK05858 57 AAEAWAKLT---RVPGVAVLTAGPGVTNG---MSAMAAAQFNQSPLVVLGGRAPALRWGM--GSLQEIDHVPFVAPVTKF 128 (542)
T ss_pred HHHHHHHhc---CCCeEEEEcCCchHHHH---HHHHHHHHhcCCCEEEEeCCCCcccCCC--CCCcccchhhhhhhhhce
Confidence 455555542 23344555557777752 3457788889999999885433221110 111123555667776666
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEVKC 266 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t 266 (276)
..+++ +++++.+.+.+|+..+..+ .||+.|++-.
T Consensus 129 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 163 (542)
T PRK05858 129 AATAQ--SAENAGRLVDQALQAAVTPHRGPVFVDFPM 163 (542)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHcCCCCCeEEEEcCh
Confidence 66775 6788888888888777654 4799998753
No 208
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=90.26 E-value=2.6 Score=42.08 Aligned_cols=106 Identities=23% Similarity=0.188 Sum_probs=64.9
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.+... ++-..+++..|=|.++. --++..|..-+.|+|+|.-.-...... .......|...+++.+--.
T Consensus 66 ~Adgyar~t---g~~gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 137 (585)
T CHL00099 66 AADGYARST---GKVGVCFATSGPGATNL---VTGIATAQMDSVPLLVITGQVGRAFIG--TDAFQEVDIFGITLPIVKH 137 (585)
T ss_pred HHHHHHHhc---CCcEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccC--CCCccccchhhhhcCceeE
Confidence 344444432 33455666668888863 235777888899999998543211100 0111123445556665555
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVKC 266 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 266 (276)
..+|+ +++++.+.+++|++.++.++ ||+.|++-.
T Consensus 138 ~~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~ 172 (585)
T CHL00099 138 SYVVR--DARDISRIVAEAFYIAKHGRPGPVLIDIPK 172 (585)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHccCCCCeEEEecCh
Confidence 55664 78899999999988777553 799998753
No 209
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=89.93 E-value=1.7 Score=41.07 Aligned_cols=106 Identities=14% Similarity=0.160 Sum_probs=69.5
Q ss_pred cchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccccccCccCCcch-hhhHhh
Q 023827 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQFRSDGA-VVKGRA 226 (276)
Q Consensus 149 l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~~~~~~~~~-~~~a~a 226 (276)
+.+|+|+++| ..++++.+-=+++.- .+|.+.+|+-..+|+++++.+-. -+...|+.. ...|+ ..+...
T Consensus 60 ~~~a~GAs~a------G~Ra~taTSg~G~~l--m~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~--~q~D~~~~~~~~ 129 (375)
T PRK09627 60 ISVALGASMS------GVKSMTASSGPGISL--KAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRV--AQGDVNQAKNPT 129 (375)
T ss_pred HHHHHHHHhh------CCCEEeecCCchHHH--HhhHHHHHHhccCCEEEEEeccCCCcCCCCCcc--chHHHHHHhcCC
Confidence 5678888887 446776665555643 56889999999999988776542 111112211 11122 222222
Q ss_pred ---cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 227 ---YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 227 ---~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
|+|- ...-.|+.+++....+|.+.+.+..-|+++-...
T Consensus 130 hgd~~~i--vl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~ 170 (375)
T PRK09627 130 HGDFKSI--ALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE 170 (375)
T ss_pred CCCcCcE--EEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch
Confidence 3454 4556789999999999999888888999988776
No 210
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=89.56 E-value=2.2 Score=42.73 Aligned_cols=102 Identities=15% Similarity=0.111 Sum_probs=62.7
Q ss_pred cchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccc-cccccCccCCcchhhhHhhc
Q 023827 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRAY 227 (276)
Q Consensus 149 l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~-~~~~~~~~~~~~~~~~a~a~ 227 (276)
+++|.|+|+. ..++|+.+ =..|..=.+.+..+.++..++|++++....++.. .++++. ...|++-+..--
T Consensus 334 vg~A~GlA~~------G~~p~~~~-f~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~--~~edia~lr~iP 404 (580)
T PRK05444 334 VTFAAGLATE------GLKPVVAI-YSTFLQRAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQ--GAFDLSYLRCIP 404 (580)
T ss_pred HHHHHHHHHC------CCeeEEEe-eHHHHHHHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCcccc--ccHHHHHHhcCC
Confidence 3556676663 23444444 4456542333345557889999999998776532 233322 234454444445
Q ss_pred CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 228 G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
|+.++.- -|+.+...+++.|++. .++|++|..
T Consensus 405 ~l~V~~P--sd~~e~~~~l~~a~~~---~~~P~~ir~ 436 (580)
T PRK05444 405 NMVIMAP--SDENELRQMLYTALAY---DDGPIAIRY 436 (580)
T ss_pred CCEEEee--CCHHHHHHHHHHHHhC---CCCcEEEEe
Confidence 7777653 4888999999998862 368988754
No 211
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=89.45 E-value=3.2 Score=39.68 Aligned_cols=108 Identities=17% Similarity=0.151 Sum_probs=72.8
Q ss_pred ccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhc
Q 023827 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (276)
Q Consensus 148 ~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (276)
++.+++|++++ ..++++.+-=.+++ -.+|.|..|+-.++|+|+++.+-+.....++ .....|+.. ++.-
T Consensus 68 A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aa~~~~P~V~~~~~R~~~~~~~i--~~d~~D~~~-~r~~ 136 (407)
T PRK09622 68 AMSACVGAAAA------GGRVATATSSQGLA--LMVEVLYQASGMRLPIVLNLVNRALAAPLNV--NGDHSDMYL-SRDS 136 (407)
T ss_pred HHHHHHHHHhh------CcCEEeecCcchHH--HHhhHHHHHHHhhCCEEEEEeccccCCCcCC--CchHHHHHH-HhcC
Confidence 35678888887 44566666555554 3678999999999998888877764322111 111223322 2334
Q ss_pred CceEEEEcCCCHHHHHHHHHHHHHHhHcc--CCCEEEEEEEec
Q 023827 228 GVRSIRVDGNDALAIYSAVHAAREMAIGE--GRPILIEVKCLS 268 (276)
Q Consensus 228 G~~~~~vdg~d~~~v~~a~~~a~~~~r~~--~~P~lIe~~t~R 268 (276)
||.++ ...|+.++++....|.+.+.+. .-|+++-...++
T Consensus 137 g~ivl--~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~ 177 (407)
T PRK09622 137 GWISL--CTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFL 177 (407)
T ss_pred CeEEE--eCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhh
Confidence 66554 4568999999999999888765 789998887765
No 212
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=89.39 E-value=1.9 Score=43.76 Aligned_cols=102 Identities=14% Similarity=0.101 Sum_probs=62.2
Q ss_pred ccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHH-HHHHHCCCCEEEEEEeCCcc-ccccccCccCCcchhhhHh
Q 023827 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL-NFSAVTEAPVIFICRNNGWA-ISTPISDQFRSDGAVVKGR 225 (276)
Q Consensus 148 ~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal-~~A~~~~Lpvi~vv~nN~~~-~~~~~~~~~~~~~~~~~a~ 225 (276)
.+++|.|+|+. .-+++++++ ..|.+ -..+.+ +.++..++|++++++..++. .+++++. ...+++-+..
T Consensus 373 mvg~AaGlA~~-----G~~P~v~~f--~~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq--~~~dia~lr~ 442 (641)
T PRK12571 373 AVTFAAGLAAA-----GLKPFCAVY--STFLQ-RGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHA--GAFDLAFLTN 442 (641)
T ss_pred HHHHHHHHHHC-----CCEEEEEeh--HHHHH-HHHHHHHHHHhhcCCCeEEEEECCCcCCCCCcccc--ccHHHHHHhc
Confidence 34566666653 124455544 34654 334444 66788999999999766653 2334332 2344544444
Q ss_pred hcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 226 a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
--|+.++.- .|+.++..+++.|+++ .++|++|-.
T Consensus 443 iPnl~V~~P--sd~~e~~~~l~~a~~~---~~~P~~ir~ 476 (641)
T PRK12571 443 LPNMTVMAP--RDEAELRHMLRTAAAH---DDGPIAVRF 476 (641)
T ss_pred CCCCEEEee--CCHHHHHHHHHHHHhC---CCCcEEEEE
Confidence 447776643 4788999999988852 368998854
No 213
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=89.38 E-value=2.7 Score=40.89 Aligned_cols=101 Identities=20% Similarity=0.142 Sum_probs=60.7
Q ss_pred cccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHH--------HCCCCEEEEEEeCCccccccccCccCCc
Q 023827 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSA--------VTEAPVIFICRNNGWAISTPISDQFRSD 218 (276)
Q Consensus 147 ~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~--------~~~Lpvi~vv~nN~~~~~~~~~~~~~~~ 218 (276)
..+++|+|+|++- -++++.+.. ..|.+-.+.+-.|.++ ++++|++|+..|.+....++ +.+..
T Consensus 200 ~~vg~AaGlA~~G-----~rPiv~~~~-~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~---hhs~~ 270 (464)
T PRK11892 200 GFAGIGVGAAFAG-----LKPIVEFMT-FNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAA---QHSQD 270 (464)
T ss_pred HHHHHHHHHHhCC-----CEEEEEEeh-HHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCC---ccccC
Confidence 3356677777752 244444432 1222223445556777 88999999988776644322 22333
Q ss_pred chhhhHhh-cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEE
Q 023827 219 GAVVKGRA-YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (276)
Q Consensus 219 ~~~~~a~a-~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe 263 (276)
++ .+.+. -|+.++.- .|+.+....++.+++ .++|++|-
T Consensus 271 d~-a~~~~iPgl~V~~P--~d~~d~~~ll~~ai~----~~~Pv~il 309 (464)
T PRK11892 271 YA-AWYSHIPGLKVVAP--YSAADAKGLLKAAIR----DPNPVIFL 309 (464)
T ss_pred HH-HHHhhCCCCEEEEe--CCHHHHHHHHHHHhh----CCCcEEEE
Confidence 44 44444 47777643 478888888988885 36899873
No 214
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=89.20 E-value=3 Score=39.76 Aligned_cols=110 Identities=17% Similarity=0.205 Sum_probs=72.7
Q ss_pred ccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhc
Q 023827 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (276)
Q Consensus 148 ~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (276)
++.+++|++++ ..++++.+-=.+++ -.+|.|..|+-.++|+++++-|-..+. |..-.....|+. -.+-.
T Consensus 62 A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aag~~lP~V~vv~~R~~~~--p~~i~~d~~D~~-~~rd~ 130 (394)
T PRK08367 62 AISACVGASAA------GVRTFTATASQGLA--LMHEVLFIAAGMRLPIVMAIGNRALSA--PINIWNDWQDTI-SQRDT 130 (394)
T ss_pred HHHHHHHHHhh------CCCeEeeeccchHH--HHhhHHHHHHHccCCEEEEECCCCCCC--CCCcCcchHHHH-hcccc
Confidence 46678888887 44566665444444 357889999999999999885554332 211110112221 22346
Q ss_pred CceEEEEcCCCHHHHHHHHHHHHHHhHccC--CCEEEEEEEecCC
Q 023827 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEG--RPILIEVKCLSFS 270 (276)
Q Consensus 228 G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~--~P~lIe~~t~R~~ 270 (276)
||-.+.. .|+.+.++-...|.+.+.+.+ -|+++-...||..
T Consensus 131 g~~~~~a--~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~s 173 (394)
T PRK08367 131 GWMQFYA--ENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILT 173 (394)
T ss_pred CeEEEeC--CCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhc
Confidence 7766554 688999998888988877433 6999999888764
No 215
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=89.18 E-value=3.9 Score=40.69 Aligned_cols=103 Identities=16% Similarity=0.005 Sum_probs=61.5
Q ss_pred hhhhHHHHhhhcCCCceEEEE--ECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcC
Q 023827 151 HAVGAAYALKMDRKDACAVTY--FGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~--~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (276)
+|-|.|.+. ++..+|+ .|=|.++. --++..|..-++|+|+|.-+-....... ......+..++++.+-
T Consensus 56 ~Adgyar~t-----g~~gv~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~Q~~d~~~l~~~it 125 (574)
T PRK09124 56 AAGAEAQLT-----GELAVCAGSCGPGNLHL---INGLFDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHPQELFRECS 125 (574)
T ss_pred HHHHHHHhh-----CCcEEEEECCCCCHHHH---HHHHHHHhhcCCCEEEEecCCccccCCC--CCccccChhhhcccce
Confidence 455555442 2345555 46666652 1347778888999999986533221111 1111234455565554
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEE
Q 023827 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVK 265 (276)
Q Consensus 229 ~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~ 265 (276)
....+++ +++++.+.+++|+..+....||+.|++-
T Consensus 126 k~~~~v~--~~~~~~~~i~~A~~~A~~~~gPV~l~iP 160 (574)
T PRK09124 126 HYCELVS--NPEQLPRVLAIAMRKAILNRGVAVVVLP 160 (574)
T ss_pred eeeEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 4445554 6778888888888777777799999874
No 216
>PLN02573 pyruvate decarboxylase
Probab=88.71 E-value=3.2 Score=41.49 Aligned_cols=107 Identities=20% Similarity=0.158 Sum_probs=64.0
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCcccccc---ccCccCCc---chhhhH
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP---ISDQFRSD---GAVVKG 224 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~---~~~~~~~~---~~~~~a 224 (276)
+|-|.|.+. + ...+++..|=|.++. .-++..|..-+.|+|+|.-.-....... .+...... ...+.+
T Consensus 69 mAdgyaR~t---g-~gv~~~t~GpG~~n~---~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (578)
T PLN02573 69 AADGYARAR---G-VGACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCF 141 (578)
T ss_pred HHHHHHHHh---C-CCeEEEecCccHHHH---HHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHh
Confidence 344555432 3 456777778887762 2347778888999999986443321100 00000001 112445
Q ss_pred hhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 225 RAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 225 ~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
+.+--...+|. +++++.+.+++|++.++...||+.|++-.
T Consensus 142 ~~itk~s~~v~--~~~~~~~~l~~A~~~A~~~~gPV~l~iP~ 181 (578)
T PLN02573 142 QTVTCYQAVIN--NLEDAHELIDTAISTALKESKPVYISVSC 181 (578)
T ss_pred hceEEEEEEeC--CHHHHHHHHHHHHHHHHhcCCCEEEEeeh
Confidence 55444555554 67788888888888877788999998843
No 217
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=88.64 E-value=3.5 Score=38.70 Aligned_cols=102 Identities=21% Similarity=0.112 Sum_probs=58.5
Q ss_pred ccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCC--------CCEEEEEEeCCccccccccCccCC
Q 023827 146 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE--------APVIFICRNNGWAISTPISDQFRS 217 (276)
Q Consensus 146 G~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~--------Lpvi~vv~nN~~~~~~~~~~~~~~ 217 (276)
.+.+++|+|+|++- .++++++.. ..|.+=.+.+-.+-++.++ +|++++..+....-.++++. .
T Consensus 84 q~~vg~AaGlA~~G-----~~P~v~~~~-~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~G~tH~---~ 154 (356)
T PLN02683 84 AGFTGIGVGAAYAG-----LKPVVEFMT-FNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHS---Q 154 (356)
T ss_pred HHHHHHHHHHHHCC-----CEEEEEEeh-hhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCCCCccc---c
Confidence 34456677777752 234444431 1222223344456666655 99999987733222233332 2
Q ss_pred cchhhhHhh-cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEE
Q 023827 218 DGAVVKGRA-YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (276)
Q Consensus 218 ~~~~~~a~a-~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe 263 (276)
.+. ...++ -|+.++.- -|..++..+++.|++ .++|+.|-
T Consensus 155 ~~~-a~lr~iPnl~V~~P--ad~~e~~~~l~~a~~----~~gPv~ir 194 (356)
T PLN02683 155 CFA-AWYSSVPGLKVLAP--YSSEDARGLLKAAIR----DPDPVVFL 194 (356)
T ss_pred CHH-HHHhcCCCCEEEEe--CCHHHHHHHHHHHHh----CCCcEEEE
Confidence 223 44554 37777653 478899999988885 36899885
No 218
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=88.58 E-value=2.6 Score=43.03 Aligned_cols=103 Identities=13% Similarity=0.141 Sum_probs=62.6
Q ss_pred ccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccc-cccccCccCCcchhhhHhh
Q 023827 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRA 226 (276)
Q Consensus 148 ~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~-~~~~~~~~~~~~~~~~a~a 226 (276)
.+++|.|+|+. | -+++++++ ..|.+=.+-+-++-++..++|++|++...++.. +++++. ...|++-+..-
T Consensus 410 ~vg~AaGLA~~----G-~kPvv~~f--s~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~--~~~Dia~lr~i 480 (677)
T PLN02582 410 AVTFAAGLACE----G-LKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GAFDVTYMACL 480 (677)
T ss_pred HHHHHHHHHHC----C-CeEEEEec--HHHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCccc--ccHHHHHHhcC
Confidence 34555555553 2 35555554 356443344456777889999999998776532 233332 22344433333
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 227 ~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
-|+.++.- -|..++..+++.|++. .++|++|..
T Consensus 481 Pnl~V~~P--sd~~E~~~~l~~al~~---~~gPv~IR~ 513 (677)
T PLN02582 481 PNMVVMAP--SDEAELFHMVATAAAI---DDRPSCFRY 513 (677)
T ss_pred CCCEEEee--CCHHHHHHHHHHHHhC---CCCCEEEEE
Confidence 47776643 4788899999888853 358998854
No 219
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=88.57 E-value=2.8 Score=40.21 Aligned_cols=149 Identities=17% Similarity=0.198 Sum_probs=83.6
Q ss_pred CCCHHHHHHHhhcCCC-----CCCCCCCCccccCCC---CCCccccccccccccchhhhHHHHhhhcCCCceEEEEECCC
Q 023827 104 GFSMQEFANQCFGNKA-----DYGKGRQMPIHYGSN---KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDG 175 (276)
Q Consensus 104 G~~~~~~l~~~~~~~~-----~~~~G~~~~~h~~~~---~~~~~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG 175 (276)
|..-.+++.+++.+.. ++..|..++.|-... +.++.- .-+-..+.=+|-|.|.+. ++..+|++..|-|
T Consensus 90 g~tGg~If~emm~rqnV~tVFgYPGGAilpv~dAi~rS~~f~fvL-PrHEQgaghaAegYaR~s---gKPGvvlvTSGPG 165 (675)
T KOG4166|consen 90 GRTGGDIFVEMMERQNVETVFGYPGGAILPVHDAITRSSSFRFVL-PRHEQGAGHAAEGYARSS---GKPGVVLVTSGPG 165 (675)
T ss_pred CCchhHHHHHHHHhcCCceEeecCCcceeehHhhhhcCccccccc-cccccccchhhhhhhhhc---CCCcEEEEecCCC
Confidence 4444567777766543 344566777775432 112211 111111112344555443 4678999999999
Q ss_pred cCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhc-CceEEEEcCCCHHHHHHHHHHHHHHhH
Q 023827 176 GTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAI 254 (276)
Q Consensus 176 ~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~-G~~~~~vdg~d~~~v~~a~~~a~~~~r 254 (276)
+.+- -.-|.-|-.-+.|++++- .+..-+.-..+.+...|+..+-+++ .|.+.. .|++++.+-+.+|.+.+.
T Consensus 166 ATNv---vtp~ADAlaDg~PlVvft--GQVptsaIGtDAFQEadiVgisRScTKwNvmV---kdVedlPrrI~EAFeiAT 237 (675)
T KOG4166|consen 166 ATNV---VTPLADALADGVPLVVFT--GQVPTSAIGTDAFQEADIVGISRSCTKWNVMV---KDVEDLPRRIEEAFEIAT 237 (675)
T ss_pred cccc---cchhhHHhhcCCcEEEEe--cccchhhcccchhccCCeeeeeeccceeheee---ecHHHhhHHHHHHhhhhc
Confidence 9973 122556666788987653 3332111112223334444455554 455554 478999999999998776
Q ss_pred ccC-CCEEEEE
Q 023827 255 GEG-RPILIEV 264 (276)
Q Consensus 255 ~~~-~P~lIe~ 264 (276)
.++ ||+|+++
T Consensus 238 SGRPGPVLVDl 248 (675)
T KOG4166|consen 238 SGRPGPVLVDL 248 (675)
T ss_pred cCCCCCeEeeC
Confidence 554 7899886
No 220
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=88.50 E-value=4.1 Score=40.64 Aligned_cols=106 Identities=19% Similarity=0.049 Sum_probs=61.8
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|-|.+.+. ++-..+++..|=|.++. .-++..|..-+.|+|+|.-.-...... .......+...+++.+=-.
T Consensus 56 mAdgyar~t---gk~~v~~v~~GpG~~N~---~~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~Qe~d~~~l~~~~tk~ 127 (578)
T PRK06546 56 AAAAEAQLT---GKLAVCAGSCGPGNLHL---INGLYDAHRSGAPVLAIASHIPSAQIG--SGFFQETHPDRLFVECSGY 127 (578)
T ss_pred HHHhHHHhh---CCceEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCCccccC--CCCccccChhhhcccceee
Confidence 344554442 22334444457777762 134777888899999998533211110 0111112334455544333
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
..+|. +++++...+.+|++.+....||+.|++-.
T Consensus 128 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~lP~ 161 (578)
T PRK06546 128 CEMVS--SAEQAPRVLHSAIQHAVAGGGVSVVTLPG 161 (578)
T ss_pred EeEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEcCh
Confidence 44553 67888888888888888778999998753
No 221
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=88.39 E-value=2.1 Score=43.66 Aligned_cols=104 Identities=10% Similarity=0.053 Sum_probs=64.7
Q ss_pred cccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccc-cccccCccCCcchhhhHh
Q 023827 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGR 225 (276)
Q Consensus 147 ~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~-~~~~~~~~~~~~~~~~a~ 225 (276)
+.+++|.|+|.. | -++++++. ..|.+=.+-+-.+-++..++|++|+++.-++.. +++++. ...|++-+..
T Consensus 434 haVt~AAGLA~~----G-~kPvv~iy--stFlqRAyDQI~~Dval~~lpV~~vid~aGlvg~DG~TH~--g~~Dia~lr~ 504 (701)
T PLN02225 434 HAVTFSAGLSSG----G-LKPFCIIP--SAFLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQC--GAFDIAFMSS 504 (701)
T ss_pred HHHHHHHHHHHC----C-CEEEEEee--hhHHHHHHHHHHHHHHhhcCCceEEEECCccCCCCCcccc--ccHHHHHHhc
Confidence 444556666653 2 36677777 467554455555667889999999998765432 233322 2345544333
Q ss_pred hcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 226 a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
--|+.++.- .|..++...++.|.. ..++|+.|-.
T Consensus 505 IPnm~V~aP--sD~~El~~mL~~A~~---~~~gPv~IR~ 538 (701)
T PLN02225 505 LPNMIAMAP--ADEDELVNMVATAAY---VTDRPVCFRF 538 (701)
T ss_pred CCCCEEEee--CCHHHHHHHHHHHHh---cCCCCEEEEe
Confidence 347766643 478899988888774 2458998754
No 222
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=88.29 E-value=2.3 Score=43.07 Aligned_cols=101 Identities=14% Similarity=0.168 Sum_probs=59.2
Q ss_pred ccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCcc-ccccccCccCCcchhhhHhh
Q 023827 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA-ISTPISDQFRSDGAVVKGRA 226 (276)
Q Consensus 148 ~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~-~~~~~~~~~~~~~~~~~a~a 226 (276)
.+++|+|+|+. | -+++++++ +.|.+-.+.+-.+.++..++|++|+++..++. ..++++. ...|++-+..-
T Consensus 411 ~Vg~AaGLA~~----G-~rPvv~~f--s~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~--~~~Dia~lr~i 481 (641)
T PLN02234 411 AVTFAAGLACE----G-LKPFCTIY--SSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHC--GAFDVTFMACL 481 (641)
T ss_pred HHHHHHHHHHC----C-CeEEEEeh--HHHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCCCcccc--ccHHHHHHhcC
Confidence 34556666653 2 24444443 44544334444467788999999999877753 2333332 22334332233
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEE
Q 023827 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILI 262 (276)
Q Consensus 227 ~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lI 262 (276)
-|+.++.- -|+.++..+++.|... .++|++|
T Consensus 482 Pnl~V~~P--sd~~E~~~~l~~a~~~---~~~Pv~i 512 (641)
T PLN02234 482 PNMIVMAP--SDEAELFNMVATAAAI---DDRPSCF 512 (641)
T ss_pred CCCEEEee--CCHHHHHHHHHHHHhC---CCCCEEE
Confidence 47766643 4788888888887652 4589887
No 223
>PRK06154 hypothetical protein; Provisional
Probab=88.18 E-value=4.2 Score=40.46 Aligned_cols=92 Identities=11% Similarity=0.078 Sum_probs=58.0
Q ss_pred ceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHH
Q 023827 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSA 245 (276)
Q Consensus 166 ~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a 245 (276)
.++++..|=|.++. --++..|..-+.|+|+|.-........ .....+...+++.+--...+|+ +++++.+.
T Consensus 83 gv~~~t~GPG~~N~---~~gla~A~~~~~Pvl~i~G~~~~~~~~----~~~~~d~~~~~~~vtk~~~~v~--~~~~~~~~ 153 (565)
T PRK06154 83 GVFAVQYGPGAENA---FGGVAQAYGDSVPVLFLPTGYPRGSTD----VAPNFESLRNYRHITKWCEQVT--LPDEVPEL 153 (565)
T ss_pred EEEEECCCccHHHH---HHHHHHHhhcCCCEEEEeCCCCccccc----CCCCcchhhhHhhcceeEEECC--CHHHHHHH
Confidence 33444458887762 245778888899999998543322110 0011233345565544455554 78888888
Q ss_pred HHHHHHHhHcc-CCCEEEEEEE
Q 023827 246 VHAAREMAIGE-GRPILIEVKC 266 (276)
Q Consensus 246 ~~~a~~~~r~~-~~P~lIe~~t 266 (276)
+.+|++.++.+ .||+.|++-.
T Consensus 154 i~~A~~~A~s~~~GPV~l~iP~ 175 (565)
T PRK06154 154 MRRAFTRLRNGRPGPVVLELPV 175 (565)
T ss_pred HHHHHHHHhcCCCceEEEecch
Confidence 99998888765 5899998753
No 224
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=87.75 E-value=2.4 Score=42.47 Aligned_cols=103 Identities=10% Similarity=0.018 Sum_probs=62.5
Q ss_pred ccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhc
Q 023827 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (276)
Q Consensus 148 ~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (276)
.+++|.|+|+. + -+++++.+.+ |.+-.+.+-.+-++..++|+++++...++..+++++. ...|++-+..--
T Consensus 332 ~v~~AaGlA~~----G-~~Pvv~~fs~--Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~dG~TH~--~~~Dia~lr~iP 402 (581)
T PRK12315 332 SVAFASGIAAN----G-ARPVIFVNST--FLQRAYDQLSHDLAINNNPAVMIVFGGSISGNDVTHL--GIFDIPMISNIP 402 (581)
T ss_pred HHHHHHHHHHC----c-CeEEEEeeHH--HHHHHHHHHHHHHHhcCCCEEEEEECCcccCCCcccc--ccHHHHHHhcCC
Confidence 34556666653 2 3455555543 4333333345556788999999998776654444443 234454333334
Q ss_pred CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 228 G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
|+.++. --|+.++..+++.|++. .++|+.|-.
T Consensus 403 nl~V~~--P~d~~e~~~~l~~a~~~---~~gP~~ir~ 434 (581)
T PRK12315 403 NLVYLA--PTTKEELIAMLEWALTQ---HEHPVAIRV 434 (581)
T ss_pred CCEEEe--cCCHHHHHHHHHHHHhC---CCCcEEEEE
Confidence 666654 34788999999888852 368998865
No 225
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=87.58 E-value=3.4 Score=33.72 Aligned_cols=107 Identities=12% Similarity=0.123 Sum_probs=66.1
Q ss_pred cccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccc-cccCccCCcchhhhHh
Q 023827 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST-PISDQFRSDGAVVKGR 225 (276)
Q Consensus 147 ~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~-~~~~~~~~~~~~~~a~ 225 (276)
-+++++.|+.+|-+ +...+.-.-++.. ++..-..+-..+++|++.++..-++-... +.+..+ ..-+.++.+
T Consensus 53 eg~GIcAGa~lAGk------k~ailmQnsGlGN-siNal~SL~~ty~iPl~ml~ShRG~~~E~i~AQVpm-Gr~~~kiLe 124 (172)
T COG4032 53 EGVGICAGAYLAGK------KPAILMQNSGLGN-SINALASLYVTYKIPLLMLASHRGVLKEGIEAQVPM-GRALPKILE 124 (172)
T ss_pred cceeeehhhhhcCC------CcEEEEeccCcch-HHHHHHHHHHHhccchhhhhhccchhhcCCcccccc-chhhHHHHh
Confidence 45677889998854 3333433333321 12221222345899999998877753221 211111 233667888
Q ss_pred hcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEE
Q 023827 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (276)
Q Consensus 226 a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe 263 (276)
..+++.++..+ +++-++.+..+...+-+..+|+.+-
T Consensus 125 ~~~lpt~t~~~--p~Ea~~li~~~~~~a~~~s~pv~vl 160 (172)
T COG4032 125 GLELPTYTIIG--PEEALPLIENAILDAFENSRPVAVL 160 (172)
T ss_pred hcCCcccccCC--HHHHHHHHHHHHHHHHHcCCceEEE
Confidence 99999998874 6777788888887777788897543
No 226
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=87.18 E-value=4.5 Score=41.14 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=54.0
Q ss_pred cCCcchHHHHHHHHHHCCCCEEEEEEeCCccc--cccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHh
Q 023827 176 GTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMA 253 (276)
Q Consensus 176 ~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~--~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~ 253 (276)
.|.+ -.++++..++..++|+++|....+++. +++++ .+..+++-+-.--|+.++.- -|..++..+++.+++
T Consensus 430 ~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~TH--q~iedia~lr~iPn~~v~~P--aD~~E~~~~~~~a~~-- 502 (653)
T TIGR00232 430 MFVD-YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTH--QPIEQLASLRAIPNLSVWRP--CDGNETAAAWKYALE-- 502 (653)
T ss_pred HHHH-HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCccc--CCHHHHHHHhcCCCCEEEee--CCHHHHHHHHHHHHh--
Confidence 5543 456788889999999999998777654 34444 23344443322236666643 478899999988884
Q ss_pred HccCCCEEEEE
Q 023827 254 IGEGRPILIEV 264 (276)
Q Consensus 254 r~~~~P~lIe~ 264 (276)
+.++|+.|-.
T Consensus 503 -~~~gP~~irl 512 (653)
T TIGR00232 503 -SQDGPTALIL 512 (653)
T ss_pred -cCCCcEEEEE
Confidence 2468988753
No 227
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=86.99 E-value=2.5 Score=40.50 Aligned_cols=108 Identities=18% Similarity=0.110 Sum_probs=60.2
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|-|.|.+ .++-.++++..|=|.++. .-++..|..-+.|+|+|.-.-...... .......|..++++.+--.
T Consensus 53 mAdgyar~---tg~~gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 124 (432)
T TIGR00173 53 FALGLAKA---SGRPVAVVCTSGTAVANL---LPAVIEASYSGVPLIVLTADRPPELRG--CGANQTIDQPGLFGSYVRW 124 (432)
T ss_pred HHHHHHhc---cCCCEEEEECCcchHhhh---hHHHHHhcccCCcEEEEeCCCCHHHhC--CCCCcccchhhHHhhccce
Confidence 34454443 233456666668887763 235777778889999998543321111 0111223455566665544
Q ss_pred EEEEcCCC----HHHHHHHHHHHHHHhHcc-CCCEEEEEEE
Q 023827 231 SIRVDGND----ALAIYSAVHAAREMAIGE-GRPILIEVKC 266 (276)
Q Consensus 231 ~~~vdg~d----~~~v~~a~~~a~~~~r~~-~~P~lIe~~t 266 (276)
..+|...+ +..+.+.+++|++.+..+ .||+.|++-.
T Consensus 125 ~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 165 (432)
T TIGR00173 125 SLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPF 165 (432)
T ss_pred eeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCC
Confidence 55554221 122556666776666553 4899998853
No 228
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=86.65 E-value=5.9 Score=39.01 Aligned_cols=106 Identities=17% Similarity=0.105 Sum_probs=64.4
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.|.+. +...++++..|=|..+ ..-++..|..-+.|+|+|.-.-.+....... .....|..++++.+--.
T Consensus 63 ~Adgyar~t---g~~~v~~vt~gpG~~N---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~-~~~~~d~~~l~~~~tk~ 135 (530)
T PRK07092 63 MADGYAQAT---GNAAFVNLHSAAGVGN---AMGNLFTAFKNHTPLVITAGQQARSILPFEP-FLAAVQAAELPKPYVKW 135 (530)
T ss_pred HHHHHHHHh---CCceEEEeccCchHHH---HHHHHHHHhhcCCCEEEEecCCcccccCccc-hhcccCHHHhhcccccc
Confidence 456665543 3344555556777774 2345778888899999888643322111000 00112444556655434
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVK 265 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~ 265 (276)
..++ .+++++.+.+.+|+..++..+ ||+.|++-
T Consensus 136 ~~~v--~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 169 (530)
T PRK07092 136 SIEP--ARAEDVPAAIARAYHIAMQPPRGPVFVSIP 169 (530)
T ss_pred eeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcc
Confidence 4455 478888889999988887765 79999875
No 229
>PRK05899 transketolase; Reviewed
Probab=86.37 E-value=3.7 Score=41.45 Aligned_cols=102 Identities=19% Similarity=0.105 Sum_probs=64.0
Q ss_pred cchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccc--cccccCccCCcchhhhHhh
Q 023827 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (276)
Q Consensus 149 l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~--~~~~~~~~~~~~~~~~a~a 226 (276)
+++|.|+|+. +.-+++++.+ ..|. .-.++++.++...++|++++....++.. .++++ .+.++++-+..-
T Consensus 380 vg~A~GlA~~----G~~~pv~~t~--~~F~-~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tH--q~~edia~~r~i 450 (624)
T PRK05899 380 AAIANGLALH----GGFIPFGGTF--LVFS-DYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTH--QPVEQLASLRAI 450 (624)
T ss_pred HHHHHHHHHc----CCCeEEEEEc--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCc--ccHHHHHHHHhC
Confidence 4556666653 2123343322 3554 3567788888888999999998888654 44444 223444443333
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 227 ~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
-|+.++. --|+.++..+++.+++. .++|++|-.
T Consensus 451 P~~~V~~--P~d~~e~~~~l~~a~~~---~~~P~~ir~ 483 (624)
T PRK05899 451 PNLTVIR--PADANETAAAWKYALER---KDGPSALVL 483 (624)
T ss_pred CCcEEEe--CCCHHHHHHHHHHHHHc---CCCCEEEEE
Confidence 4666654 34888999999988862 368988866
No 230
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=86.28 E-value=4.4 Score=40.67 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=65.1
Q ss_pred cchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHC--CCCEEEEEEeCCccccccccCccCCcchhhhHhh
Q 023827 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--EAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 226 (276)
Q Consensus 149 l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~--~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a 226 (276)
+.+|+|++++ ..++++.+-=.+++- ..|.|..++.. .+|+|+++-|.. + |...+....|.. .++.
T Consensus 59 ~~~~~GAs~a------G~ra~t~ts~~Gl~~--~~e~l~~~~~~g~~~~iV~~~~~~~-g---p~~~~~~q~d~~-~~~~ 125 (595)
T TIGR03336 59 VEVAAGAAWS------GLRAFCTMKHVGLNV--AADPLMTLAYTGVKGGLVVVVADDP-S---MHSSQNEQDTRH-YAKF 125 (595)
T ss_pred HHHHHHHHhc------CcceEEEccCCchhh--hHHHhhhhhhhcCcCceEEEEccCC-C---CccchhhHhHHH-HHHh
Confidence 4578888887 445666555455542 34666666644 457777776541 1 111111122222 3445
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 227 ~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
.+|+++ +-.|+.++++...+|.+.+++.+-|+++-...
T Consensus 126 ~~~~vl--~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~ 163 (595)
T TIGR03336 126 AKIPCL--EPSTPQEAKDMVKYAFELSEKFGLPVILRPTT 163 (595)
T ss_pred cCCeEE--CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEee
Confidence 688855 44589999999999999998899999988865
No 231
>PTZ00089 transketolase; Provisional
Probab=85.86 E-value=5.7 Score=40.45 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=64.2
Q ss_pred cchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccc--cccccCccCCcchhhhHhh
Q 023827 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (276)
Q Consensus 149 l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~--~~~~~~~~~~~~~~~~a~a 226 (276)
+++|.|+|+. +.-+++++.+. .|.+ -.++.+..++..++|++||....+.+. +++++. +..|++-+-.-
T Consensus 416 v~~AaGlA~~----~G~~P~~~tf~--~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq--~iedia~lR~i 486 (661)
T PTZ00089 416 CAIMNGIAAH----GGFIPFGATFL--NFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQ--PVETLALLRAT 486 (661)
T ss_pred HHHHHHHHHc----CCCeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcc--cHHHHHHHhcC
Confidence 3556666651 11245555553 6755 567779999999999999998777654 344432 23344332222
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 227 ~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
-|+.+++ --|..++..+++.|++. .++|+.|-.
T Consensus 487 Pn~~V~~--PaD~~E~~~~l~~al~~---~~gP~~irl 519 (661)
T PTZ00089 487 PNLLVIR--PADGTETSGAYALALAN---AKTPTILCL 519 (661)
T ss_pred CCcEEEe--cCCHHHHHHHHHHHHHc---CCCCEEEEe
Confidence 3555553 34788998888888752 468988765
No 232
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=82.38 E-value=5.7 Score=39.92 Aligned_cols=76 Identities=18% Similarity=0.226 Sum_probs=54.3
Q ss_pred HHHHHHHHHHCCCCEEEEEEeCCccc--cccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCC
Q 023827 182 FHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRP 259 (276)
Q Consensus 182 ~~Eal~~A~~~~Lpvi~vv~nN~~~~--~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P 259 (276)
..-|+.+|+..++|+++|....+++. ++|++. +.+.++.+=.-.++.+++= -|..+...+++.|+++ .++|
T Consensus 441 ~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHq--PiEqLa~LRaiPN~~V~RP--aD~~Et~~aw~~Al~~---~~gP 513 (663)
T COG0021 441 ARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQ--PVEQLASLRAIPNLSVIRP--ADANETAAAWKYALER---KDGP 513 (663)
T ss_pred hhHHHHHHHhcCCCeEEEEecCceecCCCCCCCC--cHHHHHHhhccCCceeEec--CChHHHHHHHHHHHhc---CCCC
Confidence 44579999999999999999998865 556543 3344554434457777752 2556788888888874 5799
Q ss_pred EEEEE
Q 023827 260 ILIEV 264 (276)
Q Consensus 260 ~lIe~ 264 (276)
+.|..
T Consensus 514 t~Lil 518 (663)
T COG0021 514 TALIL 518 (663)
T ss_pred eEEEE
Confidence 98764
No 233
>PLN02790 transketolase
Probab=81.77 E-value=9.9 Score=38.69 Aligned_cols=77 Identities=19% Similarity=0.263 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHCCCCEEEEEEeCCccc--cccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCC
Q 023827 181 DFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGR 258 (276)
Q Consensus 181 ~~~Eal~~A~~~~Lpvi~vv~nN~~~~--~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~ 258 (276)
-.++++..++..++|++||....+.+. +++++. +..|++-+-.--++.+++ --|..++..+++.|++. .++
T Consensus 431 ~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~THq--~iedla~lR~iPnl~V~~--PaD~~E~~~~l~~al~~---~~g 503 (654)
T PLN02790 431 YMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQ--PIEHLASLRAMPNILMLR--PADGNETAGAYKVAVTN---RKR 503 (654)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCceeecCCCCCcc--cHHHHHHhcCCCCcEEEe--CCCHHHHHHHHHHHHHc---CCC
Confidence 456788888999999999998877654 344432 233443322223555553 34788888888888752 468
Q ss_pred CEEEEE
Q 023827 259 PILIEV 264 (276)
Q Consensus 259 P~lIe~ 264 (276)
|+.|-.
T Consensus 504 P~~irl 509 (654)
T PLN02790 504 PTVLAL 509 (654)
T ss_pred CEEEEe
Confidence 988764
No 234
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=81.44 E-value=12 Score=35.19 Aligned_cols=111 Identities=16% Similarity=0.184 Sum_probs=70.5
Q ss_pred cccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCcccccc-ccCccCCcchhhhHh
Q 023827 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP-ISDQFRSDGAVVKGR 225 (276)
Q Consensus 147 ~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~-~~~~~~~~~~~~~a~ 225 (276)
.++++++|++++-. +..-...|.|-.- .+|++-.|+-..+|+++++.+........ +.. ...|+...-.
T Consensus 58 ~a~s~v~GA~~aGa-----r~~TaTSg~Gl~L---m~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~--dq~D~~~~r~ 127 (365)
T COG0674 58 GAISAVIGASYAGA-----RAFTATSGQGLLL---MAEALGLAAGTETPLVIVVAQRPLPSTGLPIKG--DQSDLMAARD 127 (365)
T ss_pred HHHHHHHHHHhhCc-----ceEeecCCccHHH---HHHHHHHHHhccCCeEEEEeccCcCCCcccccc--cHHHHHHHHc
Confidence 34677888888742 3333444554443 57889999999999999988876543222 111 1123322111
Q ss_pred hcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 226 a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
-||+.+... |+.+.+...-.|.+.+.+..-|+++-..-++..
T Consensus 128 -~g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~ 169 (365)
T COG0674 128 -TGFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLAS 169 (365)
T ss_pred -cCceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEeeccchhc
Confidence 288888766 777777777777777777778998776555543
No 235
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=81.22 E-value=9.6 Score=35.76 Aligned_cols=99 Identities=16% Similarity=0.133 Sum_probs=55.6
Q ss_pred cccchhhhHHHHhhhcCCCceEEEE-ECCCcCCcchHHHHHHHHHH--------CCCCEEEEEEeCCccccccccCccCC
Q 023827 147 TQLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALNFSAV--------TEAPVIFICRNNGWAISTPISDQFRS 217 (276)
Q Consensus 147 ~~l~~A~G~A~a~k~~~~~~~vv~~-~GDG~~~~G~~~Eal~~A~~--------~~Lpvi~vv~nN~~~~~~~~~~~~~~ 217 (276)
..+++|.|+|++- .++++++ +. .|.+-.+.+-.+-++. +++|++++.....++..++++.+
T Consensus 93 ~~vg~AaGlA~~G-----~~Pvv~~~fa--~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~--- 162 (355)
T PTZ00182 93 GFAGFAIGAAMNG-----LRPIAEFMFA--DFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQ--- 162 (355)
T ss_pred HHHHHHHHHHhCC-----CEEEEEechh--hHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccc---
Confidence 3355677777642 2344443 34 3333333333344444 35677777544455555555433
Q ss_pred cchhhhHhhc-CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEE
Q 023827 218 DGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILI 262 (276)
Q Consensus 218 ~~~~~~a~a~-G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lI 262 (276)
.+....++. |+.++.- -|+.++..+++.+++ .++|++|
T Consensus 163 -~~ea~lr~iPn~~V~~P--sd~~e~~~~l~~a~~----~~~P~~i 201 (355)
T PTZ00182 163 -SFEAYFAHVPGLKVVAP--SDPEDAKGLLKAAIR----DPNPVVF 201 (355)
T ss_pred -hHHHHHhcCCCCEEEee--CCHHHHHHHHHHHHh----CCCcEEE
Confidence 122445543 7777653 478899999998886 3689977
No 236
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=80.82 E-value=6.6 Score=39.24 Aligned_cols=91 Identities=12% Similarity=0.122 Sum_probs=57.6
Q ss_pred CceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCc-cccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHH
Q 023827 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 243 (276)
Q Consensus 165 ~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~-~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~ 243 (276)
-++|+++. ..|-|=..-+-+.=.+..+||++|+|+..+. +.+++++... -|++-+..--|+... --.|..++.
T Consensus 382 ~kPvvaIY--STFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G~--fDls~l~~iPnmvi~--aP~de~el~ 455 (627)
T COG1154 382 MKPVVAIY--STFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQGL--FDLSFLRCIPNMVIM--APRDEEELR 455 (627)
T ss_pred CCCEEEEe--cHHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCccccH--HHHHHHhcCCCcEEe--cCCCHHHHH
Confidence 36777776 2443333444455566789999999997774 5666665432 234333332344333 235888999
Q ss_pred HHHHHHHHHhHccCCCEEEEE
Q 023827 244 SAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 244 ~a~~~a~~~~r~~~~P~lIe~ 264 (276)
..+..|..+ .++|+.|..
T Consensus 456 ~ml~ta~~~---~~gP~AiRy 473 (627)
T COG1154 456 QMLYTALAQ---DDGPVAIRY 473 (627)
T ss_pred HHHHHHHhc---CCCCeEEEe
Confidence 999999885 458988753
No 237
>PRK12753 transketolase; Reviewed
Probab=80.49 E-value=11 Score=38.35 Aligned_cols=102 Identities=16% Similarity=0.052 Sum_probs=63.9
Q ss_pred cchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccc--cccccCccCCcchhhhHhh
Q 023827 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (276)
Q Consensus 149 l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~--~~~~~~~~~~~~~~~~a~a 226 (276)
+++|.|+|+- +.-.++++.+ ..|.+ -.++.+..++..++|+++|....+++. +++++. +.+|++-+-.-
T Consensus 415 v~~aaGlA~~----~G~~P~~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq--~iedla~lR~i 485 (663)
T PRK12753 415 TAIANGIAHH----GGFVPYTATF--LMFVE-YARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQ--PVEQLASLRLT 485 (663)
T ss_pred HHHHHHHHHh----CCCeEEEEeh--HHHHH-HHHHHHHHHHhcCCCeEEEEeCCCcccCCCCcccc--cHHHHHHHhcC
Confidence 4566666651 1123444444 36655 678889999999999999998888765 334332 33444332222
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 227 ~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
-|+.+++- -|..++..+++.|++. .++|+.|-+
T Consensus 486 Pn~~v~~P--aD~~E~~~~~~~al~~---~~gP~~irl 518 (663)
T PRK12753 486 PNFSTWRP--CDQVEAAVAWKLAIER---HNGPTALIL 518 (663)
T ss_pred CCCEEEcc--CCHHHHHHHHHHHHhc---CCCCEEEEe
Confidence 35555542 4778888888888862 368987765
No 238
>PRK12754 transketolase; Reviewed
Probab=80.41 E-value=8.5 Score=39.24 Aligned_cols=102 Identities=13% Similarity=0.058 Sum_probs=63.4
Q ss_pred cchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccc--cccccCccCCcchhhhHhh
Q 023827 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (276)
Q Consensus 149 l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~--~~~~~~~~~~~~~~~~a~a 226 (276)
.++|.|+|+- +.-.+.++.+ ..|.. -..+++.+++..++|+++|....+++. +++++. +.+|++-+-.-
T Consensus 415 v~iaaGlA~~----~G~~Pf~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq--~iEdla~lR~i 485 (663)
T PRK12754 415 TAIANGIALH----GGFLPYTSTF--LMFVE-YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQ--PVEQVASLRVT 485 (663)
T ss_pred HHHHhhHHhc----CCCeEEEEee--HHHHH-HHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcc--cHHHHHHHhcC
Confidence 3556666652 1112333333 35554 678889999999999999998888765 334332 33444433333
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 227 ~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
-|+.+++ --|..++..+++.++++ .++|+.|-+
T Consensus 486 Pn~~V~~--PaD~~E~~~~~~~a~~~---~~gP~yirl 518 (663)
T PRK12754 486 PNMSTWR--PCDQVESAVAWKYGVER---QDGPTALIL 518 (663)
T ss_pred CCcEEec--CCCHHHHHHHHHHHHhC---CCCCEEEEe
Confidence 4666554 34788888888888863 468987654
No 239
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=80.05 E-value=15 Score=34.01 Aligned_cols=103 Identities=19% Similarity=0.112 Sum_probs=57.0
Q ss_pred cccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHC--------CCCEEEEEEeCCccccccccCccCCc
Q 023827 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--------EAPVIFICRNNGWAISTPISDQFRSD 218 (276)
Q Consensus 147 ~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~--------~Lpvi~vv~nN~~~~~~~~~~~~~~~ 218 (276)
+.++.|+|+|++- -++++++.. ..|.+=.+.+-.+-++.. ++|+++...+-.++..++++.+.
T Consensus 62 ~~vg~AaGlA~~G-----~~Piv~~~~-~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~--- 132 (327)
T PRK09212 62 GFAGLAVGAAFAG-----LRPIVEFMT-FNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQC--- 132 (327)
T ss_pred HHHHHHHHHHHcC-----CeeEEEeeh-hhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccC---
Confidence 3456677777642 244555442 122222222323444444 56888877665454444444222
Q ss_pred chhhhHhh-cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEE
Q 023827 219 GAVVKGRA-YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVK 265 (276)
Q Consensus 219 ~~~~~a~a-~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~ 265 (276)
+....++ -|+.++. -.|+.++..+++.|++ .++|++|--.
T Consensus 133 -~ea~~r~iP~l~V~~--P~d~~e~~~~l~~a~~----~~~Pv~i~~~ 173 (327)
T PRK09212 133 -YAAWYSHIPGLKVVA--PYFAADCKGLLKTAIR----DPNPVIFLEN 173 (327)
T ss_pred -HHHHHhcCCCCEEEe--eCCHHHHHHHHHHHHh----CCCcEEEEEc
Confidence 2244554 3777664 3488899999998885 3789988433
No 240
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=77.91 E-value=18 Score=33.49 Aligned_cols=61 Identities=8% Similarity=0.042 Sum_probs=35.8
Q ss_pred CCCEEEEEEeCCccccccccCccCCcchhhhHhh-cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEE
Q 023827 193 EAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA-YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (276)
Q Consensus 193 ~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a-~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe 263 (276)
++|++++.-.-.+...++++.+ .+..+.+. -|+.++.- -|+.+.+..++.|++ .++|++|-
T Consensus 110 ~~~vv~~~~g~~~~~~G~tHs~----~~ea~~~~iPgl~V~~P--sd~~d~~~~l~~a~~----~~~Pv~ir 171 (327)
T CHL00144 110 TIPIVIRGPGGVGRQLGAEHSQ----RLESYFQSVPGLQIVAC--STPYNAKGLLKSAIR----SNNPVIFF 171 (327)
T ss_pred cCCEEEEecCCCCCCCCccccc----cHHHHHhcCCCCEEEEe--CCHHHHHHHHHHHHh----CCCcEEEE
Confidence 6687776322222223333322 23345554 37777654 478888888888875 46898874
No 241
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=77.67 E-value=17 Score=35.86 Aligned_cols=107 Identities=21% Similarity=0.130 Sum_probs=55.8
Q ss_pred chhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCcccc-c--cccCcc---CCcchhhh
Q 023827 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS-T--PISDQF---RSDGAVVK 223 (276)
Q Consensus 150 ~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~-~--~~~~~~---~~~~~~~~ 223 (276)
-+|-|.+.+. + ...+++..|=|.++. --++..|..-+.|+|+|.-.-..... . ..+... ...++.+.
T Consensus 53 ~mAdgyar~t---g-~gv~~~t~GPG~~n~---~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 125 (539)
T TIGR03393 53 YAADGYARCK---G-AAALLTTFGVGELSA---INGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHFYRM 125 (539)
T ss_pred HHhhhhhhhc---C-ceEEEEecCccHHHH---hhHHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHHHHH
Confidence 3455555543 2 245556668888763 13477788889999999864332100 0 000000 11122334
Q ss_pred HhhcCceEEEEcCCC-HHHHHHHHHHHHHHhHccCCCEEEEEEEe
Q 023827 224 GRAYGVRSIRVDGND-ALAIYSAVHAAREMAIGEGRPILIEVKCL 267 (276)
Q Consensus 224 a~a~G~~~~~vdg~d-~~~v~~a~~~a~~~~r~~~~P~lIe~~t~ 267 (276)
++..-.....++-.+ +..+.++++.|+. .++|+.|++-.+
T Consensus 126 ~~~itk~~~~~~~~~~~~~i~~a~~~A~~----~~gPv~l~iP~D 166 (539)
T TIGR03393 126 AAEVTVAQAVLTEQNATAEIDRVITTALR----ERRPGYLMLPVD 166 (539)
T ss_pred hhceEEEEEEeChhhhHHHHHHHHHHHHh----cCCCEEEEeccc
Confidence 433322233333334 4566666666664 568999998643
No 242
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=77.52 E-value=7.7 Score=43.73 Aligned_cols=105 Identities=14% Similarity=0.121 Sum_probs=63.3
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.|.+. ++..+++|..|=|..+ ..-++..|..-+.|+|+|.-+-........ .....|..++++.+--.
T Consensus 354 mAdGyAR~T---gkpgV~i~TsGPG~tN---~l~av~eA~~d~vPlLvItgd~p~~~~~~g--a~Q~iDq~~lf~pvtK~ 425 (1655)
T PLN02980 354 HALGYARGS---LKPAVVITSSGTAVSN---LLPAVVEASQDFVPLLLLTADRPPELQDAG--ANQAINQVNHFGSFVRF 425 (1655)
T ss_pred HHHHHHHHh---CCCEEEEEeCcHHHHH---HHHHHHHHhhcCCCEEEEeCCCCHHHhcCC--CCcccchhhHHHhhhhe
Confidence 455665543 3445566666777775 345688888899999999876543221111 11123445566665545
Q ss_pred EEEEcCCCHHH------HHHHHHHHHHHhHccC-CCEEEEEE
Q 023827 231 SIRVDGNDALA------IYSAVHAAREMAIGEG-RPILIEVK 265 (276)
Q Consensus 231 ~~~vdg~d~~~------v~~a~~~a~~~~r~~~-~P~lIe~~ 265 (276)
..+|. ++++ +..++++|+..++.++ ||+.|++-
T Consensus 426 s~~v~--~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 426 FFNLP--PPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred eecCC--CccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECc
Confidence 55553 3333 3466777777776664 89999986
No 243
>PRK13683 hypothetical protein; Provisional
Probab=76.69 E-value=3.8 Score=30.26 Aligned_cols=41 Identities=27% Similarity=0.465 Sum_probs=31.1
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 227 ~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
+-+.+-+=+-.|.+++|.-+.+|++ .+.|.++|+.|.+..+
T Consensus 13 ~P~SVQRKe~edA~alYq~I~~am~----sg~P~llELtCek~~~ 53 (87)
T PRK13683 13 MPISVQRKEAEDAEALYQQIRQAMR----SGNPRLLELTCEKVED 53 (87)
T ss_pred cceEEEeccHHHHHHHHHHHHHHHh----cCCCcEEEEEecCcCC
Confidence 3444455556688899999988886 4689999999988654
No 244
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=75.81 E-value=12 Score=34.28 Aligned_cols=100 Identities=15% Similarity=0.106 Sum_probs=58.9
Q ss_pred cchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHH-HHCCCCEEEEEEeCCcccc--ccccCccCCcchhhhHh
Q 023827 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFS-AVTEAPVIFICRNNGWAIS--TPISDQFRSDGAVVKGR 225 (276)
Q Consensus 149 l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A-~~~~Lpvi~vv~nN~~~~~--~~~~~~~~~~~~~~~a~ 225 (276)
++.|.|.|++-| .+.++ +=+.|.++-.||=+..+ ...+||+.+|+.+-++... ++++. . +.++|-
T Consensus 62 vg~AAGLA~~Gk-----~Pfv~--tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq--~---~EDiai 129 (312)
T COG3958 62 VGTAAGLALAGK-----KPFVS--TFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQ--A---LEDIAI 129 (312)
T ss_pred HHHHHHHHhcCC-----Cceee--chHHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccch--h---HHHHHH
Confidence 467778777643 23333 34688777777755555 4567899999999987543 33322 2 333333
Q ss_pred hcCceEEEE-cCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 226 AYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 226 a~G~~~~~v-dg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
--|+|=..| .-.|..+...++.++.++ +||+-+-.
T Consensus 130 mR~lpn~~V~~P~D~v~~~~i~~~~~~~----~GP~Y~Rl 165 (312)
T COG3958 130 MRGLPNMTVIAPADAVETRAILDQIADY----KGPVYMRL 165 (312)
T ss_pred HhcCCCceEEccCcHHHHHHHHHHHHhc----CCCEEEEe
Confidence 334433222 334656766666666654 78987643
No 245
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=75.59 E-value=4.6 Score=40.15 Aligned_cols=54 Identities=20% Similarity=0.228 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHC--CCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHH
Q 023827 181 DFHAALNFSAVT--EAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 243 (276)
Q Consensus 181 ~~~Eal~~A~~~--~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~ 243 (276)
+...+|.-+.+| |+|++++++|.+-.-+ .+-.+.+++||++++.||.|.|.+..
T Consensus 403 Dl~~aLED~~RhGqKlPL~VlvDnGsTeED---------ipA~~~~k~Ygi~ivVVDHH~Pde~v 458 (715)
T COG1107 403 DLNFALEDAHRHGQKLPLLVLVDNGSTEED---------IPAIKQLKAYGIDIVVVDHHYPDEAV 458 (715)
T ss_pred hHHHHHHHHHhcCCccceEEEEcCCCcccc---------cHHHHHHHhcCCCEEEEcCCCCcchh
Confidence 455667777786 5799999988642221 22446789999999999999877653
No 246
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=71.54 E-value=36 Score=27.80 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=55.4
Q ss_pred cchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCC-CCEEEEEEe-CCccccccccCccCCcchhhhHhh
Q 023827 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE-APVIFICRN-NGWAISTPISDQFRSDGAVVKGRA 226 (276)
Q Consensus 149 l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~-Lpvi~vv~n-N~~~~~~~~~~~~~~~~~~~~a~a 226 (276)
+++|.|+|+. +. ++++++... |.. -..+.+.+...++ +|+|+.... ..++..++++. +..+++-+..-
T Consensus 62 vg~a~GlA~~----G~-~pi~~~~~~--f~~-~a~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~tH~--~~~~~~~~~~i 131 (168)
T smart00861 62 VGFAAGLALA----GL-RPVVAIFFT--FFD-RAKDQIRSDGAMGRVPVVVRHDSGGGVGEDGPTHH--SQEDEALLRAI 131 (168)
T ss_pred HHHHHHHHHc----CC-CcEEEeeHH--HHH-HHHHHHHHhCcccCCCEEEEecCccccCCCCcccc--chhHHHHHhcC
Confidence 3456666654 32 555555533 322 3456677777776 565555543 33444344332 22333333332
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 227 ~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
-|+.++. -.|+.++...++.+++ ..++|..|-.
T Consensus 132 P~~~v~~--P~~~~e~~~~l~~a~~---~~~~p~~i~~ 164 (168)
T smart00861 132 PGLKVVA--PSDPAEAKGLLRAAIR---RDDGPPVIRL 164 (168)
T ss_pred CCcEEEe--cCCHHHHHHHHHHHHh---CCCCCEEEEe
Confidence 3555543 4588899999999884 3467976643
No 247
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=69.31 E-value=15 Score=28.46 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=27.2
Q ss_pred cchhhhHhhcCceEEEE--cCCCH-HHHHHHHHHHHHHhHccCCCEEEEEEEe
Q 023827 218 DGAVVKGRAYGVRSIRV--DGNDA-LAIYSAVHAAREMAIGEGRPILIEVKCL 267 (276)
Q Consensus 218 ~~~~~~a~a~G~~~~~v--dg~d~-~~v~~a~~~a~~~~r~~~~P~lIe~~t~ 267 (276)
.+..+.+++.|+..+.+ ++.++ .+-..++.++++ +..+|+|+.|++-
T Consensus 47 ~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~---~~~~Pvl~hC~sG 96 (110)
T PF04273_consen 47 AEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALE---SLPKPVLAHCRSG 96 (110)
T ss_dssp HCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHH---TTTTSEEEE-SCS
T ss_pred HHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHH---hCCCCEEEECCCC
Confidence 45678889999887654 43322 333344555555 3578999999763
No 248
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=68.44 E-value=16 Score=37.92 Aligned_cols=93 Identities=13% Similarity=0.060 Sum_probs=56.5
Q ss_pred CceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHH
Q 023827 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYS 244 (276)
Q Consensus 165 ~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~ 244 (276)
+++.||+-|+... +..+-+|..+|.+.+.|...|-..+.-....+............+|+.+|....++.|.|+..
T Consensus 249 e~ilvcI~~~~~~-e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae~~~l~~~dv~~--- 324 (890)
T COG2205 249 ERILVCISGSPGS-EKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAEIVTLYGGDVAK--- 324 (890)
T ss_pred ceEEEEECCCCch-HHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCeEEEEeCCcHHH---
Confidence 6778888777555 346788899999999997666433322111111111122335578999999999999988543
Q ss_pred HHHHHHHHhHccCCCEEEEE
Q 023827 245 AVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 245 a~~~a~~~~r~~~~P~lIe~ 264 (276)
.-.++||..+--.+|.-
T Consensus 325 ---~i~~ya~~~~~TkiViG 341 (890)
T COG2205 325 ---AIARYAREHNATKIVIG 341 (890)
T ss_pred ---HHHHHHHHcCCeeEEeC
Confidence 22345554444444433
No 249
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=64.31 E-value=22 Score=28.14 Aligned_cols=73 Identities=16% Similarity=0.078 Sum_probs=45.1
Q ss_pred CceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHH
Q 023827 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYS 244 (276)
Q Consensus 165 ~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~ 244 (276)
.++.++++.||.-+ ....+.+..+...++++.+|-....... ...+..+++.-|..++.++ .+..++.+
T Consensus 99 ~~~~iv~iTDG~~~-~~~~~~~~~~~~~~i~i~~v~~~~~~~~---------~~~l~~la~~tgG~~~~~~-~~~~~l~~ 167 (172)
T PF13519_consen 99 RRRAIVLITDGEDN-SSDIEAAKALKQQGITIYTVGIGSDSDA---------NEFLQRLAEATGGRYFHVD-NDPEDLDD 167 (172)
T ss_dssp EEEEEEEEES-TTH-CHHHHHHHHHHCTTEEEEEEEES-TT-E---------HHHHHHHHHHTEEEEEEE--SSSHHHHH
T ss_pred CceEEEEecCCCCC-cchhHHHHHHHHcCCeEEEEEECCCccH---------HHHHHHHHHhcCCEEEEec-CCHHHHHH
Confidence 57899999999876 3445667766666666555543322111 1346677788888888884 24467777
Q ss_pred HHHH
Q 023827 245 AVHA 248 (276)
Q Consensus 245 a~~~ 248 (276)
++++
T Consensus 168 ~~~~ 171 (172)
T PF13519_consen 168 AFQQ 171 (172)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
No 250
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=62.79 E-value=48 Score=29.74 Aligned_cols=77 Identities=19% Similarity=0.122 Sum_probs=49.9
Q ss_pred CceEEEEECCCcCC----cchHHHHHHHHHHCCC-CEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCH
Q 023827 165 DACAVTYFGDGGTS----EGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 239 (276)
Q Consensus 165 ~~~vv~~~GDG~~~----~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~ 239 (276)
.+.+++++-||=.+ .+...|++..|..... ++.++|.|-. ... ....-..++|..+|.+++..+...-
T Consensus 177 ~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e------~~~-~~~g~~~~iA~~~Gg~~~~L~~l~~ 249 (261)
T COG1240 177 RRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTE------GSE-VRLGLAEEIARASGGEYYHLDDLSD 249 (261)
T ss_pred cceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecC------Ccc-ccccHHHHHHHHhCCeEEecccccc
Confidence 46788899999873 3446788888877765 5544443321 011 1122355789999999999998776
Q ss_pred HHHHHHHHH
Q 023827 240 LAIYSAVHA 248 (276)
Q Consensus 240 ~~v~~a~~~ 248 (276)
..+..+.+.
T Consensus 250 ~~i~~~~r~ 258 (261)
T COG1240 250 DSIVSAVRQ 258 (261)
T ss_pred hHHHHHHHh
Confidence 666655543
No 251
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.68 E-value=30 Score=28.77 Aligned_cols=46 Identities=22% Similarity=0.416 Sum_probs=35.5
Q ss_pred cchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 218 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 218 ~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
+..+--|++||..++.++|.+-+.+.+.++..+++ -+||..|+..+
T Consensus 21 THV~LtARAfGA~gil~~~e~De~v~esv~dVv~r---wGG~F~v~~~~ 66 (179)
T COG1303 21 THVALTARAFGADGILLDGEEDEKVVESVEDVVER---WGGPFFVKFGV 66 (179)
T ss_pred hhhhhhhHhhCCceEEEcCcccHHHHHHHHHHHHh---cCCCEEEEEcc
Confidence 34566799999999999998657777777776664 78998887643
No 252
>PRK10490 sensor protein KdpD; Provisional
Probab=58.18 E-value=42 Score=35.46 Aligned_cols=93 Identities=11% Similarity=-0.083 Sum_probs=53.2
Q ss_pred ceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEE-eCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHH
Q 023827 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR-NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYS 244 (276)
Q Consensus 166 ~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~-nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~ 244 (276)
++.||+.|+ ..++-.+..+..+|.+.+.|+..|.. ............ ....+..++|+.+|..+..+.|.|+.+
T Consensus 252 riLV~v~~~-~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~-~~l~~~~~lA~~lGa~~~~~~~~dva~--- 326 (895)
T PRK10490 252 AILLCIGHN-TGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKR-RAILSALRLAQELGAETATLSDPAEEK--- 326 (895)
T ss_pred eEEEEECCC-cchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHH-HHHHHHHHHHHHcCCEEEEEeCCCHHH---
Confidence 455555555 55566778888999999988755543 322211111111 011123368999999999999988653
Q ss_pred HHHHHHHHhHccCCCEEEEEEE
Q 023827 245 AVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 245 a~~~a~~~~r~~~~P~lIe~~t 266 (276)
.-+++||..+-..+|--+.
T Consensus 327 ---~i~~~A~~~~vt~IViG~s 345 (895)
T PRK10490 327 ---AVLRYAREHNLGKIIIGRR 345 (895)
T ss_pred ---HHHHHHHHhCCCEEEECCC
Confidence 2334555554444444433
No 253
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=54.73 E-value=47 Score=32.89 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=30.6
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEe
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN 202 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~n 202 (276)
+|-|.+.+. ++-.++++..|=|.++. .-++..|...++|+|+|.-.
T Consensus 62 aAdgyar~t---g~~~v~~vt~GpG~~N~---l~~i~~A~~~~~Pvl~IsG~ 107 (568)
T PRK07449 62 LALGLAKAS---KRPVAVIVTSGTAVANL---YPAVIEAGLTGVPLIVLTAD 107 (568)
T ss_pred HHHHHHHhh---CCCEEEEECCccHHHhh---hHHHHHHhhcCCcEEEEECC
Confidence 455555543 23345666668888863 23577888899999999754
No 254
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=53.67 E-value=1.2e+02 Score=25.24 Aligned_cols=71 Identities=10% Similarity=-0.037 Sum_probs=46.8
Q ss_pred CceEEEEECCCcCC-cchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHH
Q 023827 165 DACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 243 (276)
Q Consensus 165 ~~~vv~~~GDG~~~-~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~ 243 (276)
.+.++++++||+-. .+...+.+..+...++++-+|-..+. ..-+.+++++-|-..+.+. |..++.
T Consensus 107 ~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~------------~~~L~~ia~~tgG~~~~~~--~~~~l~ 172 (183)
T cd01453 107 SREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAE------------MHICKEICKATNGTYKVIL--DETHLK 172 (183)
T ss_pred ceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechH------------HHHHHHHHHHhCCeeEeeC--CHHHHH
Confidence 35688888898764 33455666677777776655443221 1237788999999988874 667777
Q ss_pred HHHHHH
Q 023827 244 SAVHAA 249 (276)
Q Consensus 244 ~a~~~a 249 (276)
..+.++
T Consensus 173 ~~~~~~ 178 (183)
T cd01453 173 ELLLEH 178 (183)
T ss_pred HHHHhc
Confidence 766653
No 255
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=53.15 E-value=1.3e+02 Score=24.71 Aligned_cols=71 Identities=25% Similarity=0.171 Sum_probs=43.4
Q ss_pred ceEEEEECCCcCCcch--H----HHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCH
Q 023827 166 ACAVTYFGDGGTSEGD--F----HAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 239 (276)
Q Consensus 166 ~~vv~~~GDG~~~~G~--~----~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~ 239 (276)
+.+++++.||.-+.|. . .+....+..++++++.|-.. . ......-+.++|+.-|-..+.++..+-
T Consensus 99 ~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~-~--------~~~~~~~l~~iA~~tgG~~~~~~d~~~ 169 (178)
T cd01451 99 RPLIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTE-G--------RPVRRGLAKDLARALGGQYVRLPDLSA 169 (178)
T ss_pred ceEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCC-C--------CccCccHHHHHHHHcCCeEEEcCcCCH
Confidence 5899999999887542 1 33344455667777554211 1 001123367788888999998887665
Q ss_pred HHHHHH
Q 023827 240 LAIYSA 245 (276)
Q Consensus 240 ~~v~~a 245 (276)
.++..+
T Consensus 170 ~~~~~~ 175 (178)
T cd01451 170 DAIASA 175 (178)
T ss_pred HHHHHH
Confidence 555443
No 256
>PRK13685 hypothetical protein; Provisional
Probab=49.89 E-value=2e+02 Score=26.34 Aligned_cols=82 Identities=7% Similarity=0.027 Sum_probs=49.3
Q ss_pred ceEEEEECCCcCCcch-------HHHHHHHHHHCCCCEEEEEEeCCcc-ccccccC---ccCCcchhhhHhhcCceEEEE
Q 023827 166 ACAVTYFGDGGTSEGD-------FHAALNFSAVTEAPVIFICRNNGWA-ISTPISD---QFRSDGAVVKGRAYGVRSIRV 234 (276)
Q Consensus 166 ~~vv~~~GDG~~~~G~-------~~Eal~~A~~~~Lpvi~vv~nN~~~-~~~~~~~---~~~~~~~~~~a~a~G~~~~~v 234 (276)
..+++++-||.-+.|. ..++...+...++++-.|-.-+..+ +...... ......+.++|+.-|-..+.+
T Consensus 194 ~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~~~~ 273 (326)
T PRK13685 194 PARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTPYGSVEINGQRQPVPVDDESLKKIAQLSGGEFYTA 273 (326)
T ss_pred CCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCCCCCcCcCCceeeecCCHHHHHHHHHhcCCEEEEc
Confidence 4678899999876542 2456777888888875554433221 1100000 112344778888888888887
Q ss_pred cCCCHHHHHHHHHHH
Q 023827 235 DGNDALAIYSAVHAA 249 (276)
Q Consensus 235 dg~d~~~v~~a~~~a 249 (276)
+ |..++.+++++.
T Consensus 274 ~--~~~~L~~if~~I 286 (326)
T PRK13685 274 A--SLEELRAVYATL 286 (326)
T ss_pred C--CHHHHHHHHHHH
Confidence 5 556666666553
No 257
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=47.77 E-value=11 Score=27.48 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=23.1
Q ss_pred CCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 023827 12 IPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYND 44 (276)
Q Consensus 12 ~~~~~~~~~~g~~~~~~~~~~~~~~~l~~ly~~ 44 (276)
-|.+.++|.+|+..++....+.+.|++.+++..
T Consensus 42 ~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~ 74 (78)
T PF08806_consen 42 PPELVLLDEDGEEVERINIEKWKTDEIEEFLNE 74 (78)
T ss_dssp --EEEEE-SSS--SEEEE-SSSSHCHHHHHHHH
T ss_pred CCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHH
Confidence 388999999999888777788999999888754
No 258
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=46.90 E-value=1.6e+02 Score=26.07 Aligned_cols=74 Identities=16% Similarity=0.284 Sum_probs=43.9
Q ss_pred CceEEEEECCCcCCcchHHHHHHHHHH--------CCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcC
Q 023827 165 DACAVTYFGDGGTSEGDFHAALNFSAV--------TEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 236 (276)
Q Consensus 165 ~~~vv~~~GDG~~~~G~~~Eal~~A~~--------~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg 236 (276)
+...++++||-.-.+=.+.|++.+|.. .|-|||+||+.-+..++ .+=+.+|++
T Consensus 28 ~~~~iaVvg~~~~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~g-------------rreEllGi~------ 88 (234)
T PF06833_consen 28 DGRFIAVVGDANHGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYG-------------RREELLGIN------ 88 (234)
T ss_pred CCcEEEEEecCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccc-------------hHHHHhhHH------
Confidence 567888888877544336677777744 34599999986543333 223344542
Q ss_pred CCHHHHHHHHHHHHHHhHccCCCEE
Q 023827 237 NDALAIYSAVHAAREMAIGEGRPIL 261 (276)
Q Consensus 237 ~d~~~v~~a~~~a~~~~r~~~~P~l 261 (276)
.-...+..++..+|..+.|++
T Consensus 89 ----~alAhla~a~a~AR~~GHpvI 109 (234)
T PF06833_consen 89 ----QALAHLAKAYALARLAGHPVI 109 (234)
T ss_pred ----HHHHHHHHHHHHHHHcCCCeE
Confidence 222334455666666667764
No 259
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=45.98 E-value=82 Score=27.65 Aligned_cols=69 Identities=10% Similarity=0.063 Sum_probs=43.7
Q ss_pred CEEEEEEeCCccccccccCc--cCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 195 PVIFICRNNGWAISTPISDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 195 pvi~vv~nN~~~~~~~~~~~--~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
.+.+||.|..|.-. +.... .....+.+.++.+|+.+....--+..++.+++++..++....+.-+++-+
T Consensus 9 g~alII~n~~f~~~-~~r~g~~~D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~ 79 (241)
T smart00115 9 GLALIINNENFHSL-PRRNGTDVDAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCV 79 (241)
T ss_pred cEEEEEECccCCCC-cCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEE
Confidence 46677777777421 11111 12345778889999999988778888999988886543222234565555
No 260
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=44.41 E-value=1.5e+02 Score=29.88 Aligned_cols=95 Identities=22% Similarity=0.183 Sum_probs=59.3
Q ss_pred ccccccchhhhHHHHhhhc-----CCCceEEEEECCCcCCcch---------HHHHHHHHHH---CCCCEEEEEEeCCcc
Q 023827 144 TIATQLPHAVGAAYALKMD-----RKDACAVTYFGDGGTSEGD---------FHAALNFSAV---TEAPVIFICRNNGWA 206 (276)
Q Consensus 144 ~lG~~l~~A~G~A~a~k~~-----~~~~~vv~~~GDG~~~~G~---------~~Eal~~A~~---~~Lpvi~vv~nN~~~ 206 (276)
.-|.+-|++-|...|.+.. +...++++++-||..+.+. ..+++..|.. .++++++|-.-+.
T Consensus 471 ~~gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vId~g~~-- 548 (584)
T PRK13406 471 PGGGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARALRAAGLPALVIDTSPR-- 548 (584)
T ss_pred CCCCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHHHhcCCeEEEEecCCC--
Confidence 3556677777777666431 2236889999999987532 2344444443 4455444322111
Q ss_pred ccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHH
Q 023827 207 ISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAA 249 (276)
Q Consensus 207 ~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a 249 (276)
......++|+..|..++..+--|...+..+++.+
T Consensus 549 ---------~~~~~~~LA~~~gg~y~~l~~~~a~~~~~~v~~~ 582 (584)
T PRK13406 549 ---------PQPQARALAEAMGARYLPLPRADAGRLSQAVRAA 582 (584)
T ss_pred ---------CcHHHHHHHHhcCCeEEECCCCCHHHHHHHHHhh
Confidence 1223677899999999999888888877766554
No 261
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=44.33 E-value=86 Score=25.97 Aligned_cols=85 Identities=11% Similarity=0.058 Sum_probs=51.3
Q ss_pred CceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccc--------cccCccCCcchhhhHhhcCceEEEEcC
Q 023827 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST--------PISDQFRSDGAVVKGRAYGVRSIRVDG 236 (276)
Q Consensus 165 ~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~--------~~~~~~~~~~~~~~a~a~G~~~~~vdg 236 (276)
...-++++|-.....+. -.+....++++.+...+|...+.. ............+.|+.+|++++.+..
T Consensus 76 ~~~~Iavv~~~~~~~~~----~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~~~~~A~~~gl~~v~i~s 151 (176)
T PF06506_consen 76 YGPKIAVVGYPNIIPGL----ESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGVVCRLARKLGLPGVLIES 151 (176)
T ss_dssp CTSEEEEEEESS-SCCH----HHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHHHHHHHHHTTSEEEESS-
T ss_pred cCCcEEEEecccccHHH----HHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHHHHHHHHHcCCcEEEEEe
Confidence 34566666666665432 334555688888888777543211 011111233456789999999999875
Q ss_pred CCHHHHHHHHHHHHHHhH
Q 023827 237 NDALAIYSAVHAAREMAI 254 (276)
Q Consensus 237 ~d~~~v~~a~~~a~~~~r 254 (276)
..++++.|+.+|++-++
T Consensus 152 -g~esi~~Al~eA~~i~~ 168 (176)
T PF06506_consen 152 -GEESIRRALEEALRIAR 168 (176)
T ss_dssp --HHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHH
Confidence 57899999999986543
No 262
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=43.15 E-value=1.3e+02 Score=26.02 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=25.4
Q ss_pred HHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCC
Q 023827 187 NFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (276)
Q Consensus 187 ~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~ 237 (276)
..|...++|+++++.++. ...-.+..+.+|..++.+++.
T Consensus 67 ~~a~~~g~~~~v~~p~~~------------~~~~~~~~~~~Ga~v~~~~~~ 105 (244)
T cd00640 67 AAAARLGLKCTIVMPEGA------------SPEKVAQMRALGAEVVLVPGD 105 (244)
T ss_pred HHHHHcCCCEEEEECCCC------------CHHHHHHHHHCCCEEEEECCC
Confidence 345567889888886553 112334567788888888764
No 263
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=43.10 E-value=69 Score=24.33 Aligned_cols=40 Identities=28% Similarity=0.357 Sum_probs=30.0
Q ss_pred CCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC
Q 023827 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (276)
Q Consensus 163 ~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~ 204 (276)
.++..++++.-.|... +..+.+..|.+.+.|+|.|..+..
T Consensus 52 ~~~d~vi~is~sg~~~--~~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 52 DPDDLVIIISYSGETR--ELIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp STTEEEEEEESSSTTH--HHHHHHHHHHHTTSEEEEEESSTT
T ss_pred cccceeEeeeccccch--hhhhhhHHHHhcCCeEEEEeCCCC
Confidence 3566788888777775 467889999999999977776543
No 264
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=42.86 E-value=51 Score=23.34 Aligned_cols=42 Identities=17% Similarity=0.057 Sum_probs=29.6
Q ss_pred eEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 023827 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIF 272 (276)
Q Consensus 230 ~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~ 272 (276)
+.+..-|..+..+.+|++.|+.+|++. ---|-.+.+.-.+||
T Consensus 7 K~IelvGtSp~S~d~Ai~~Ai~RA~~t-~~~l~wfeV~~~rg~ 48 (71)
T COG3360 7 KKIELVGTSPTSIDAAIANAIARAADT-LDNLDWFEVVETRGH 48 (71)
T ss_pred EEEEEEecCCccHHHHHHHHHHHHHhh-hhcceEEEEEeeccc
Confidence 455666888889999999999888754 345555555555665
No 265
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=42.71 E-value=2.1e+02 Score=25.62 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=39.4
Q ss_pred hhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 023827 220 AVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIF 272 (276)
Q Consensus 220 ~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~ 272 (276)
....++.+|++.......|+++..+.++++++ .+.|++|-+.+|=+..+
T Consensus 55 ~~~~~~~lG~~~~~~~~~~~~~~~~~l~~~l~----~g~pv~~~~D~~~lpy~ 103 (317)
T PF14399_consen 55 EENLLERLGIKYEWREFSSPDEAWEELKEALD----AGRPVIVWVDMYYLPYR 103 (317)
T ss_pred HHHHHHHCCceEEEEecCCHHHHHHHHHHHHh----CCCceEEEeccccCCCC
Confidence 45677889999998888899999999999887 46799999887755433
No 266
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=42.44 E-value=1.8e+02 Score=32.03 Aligned_cols=109 Identities=14% Similarity=0.075 Sum_probs=64.8
Q ss_pred cchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcC
Q 023827 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (276)
Q Consensus 149 l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (276)
+.+++|++.+ +.++..++--.++. -++|.|-.++-..+|+|+++.+-.+.... ..-.-...|+ -.++.-|
T Consensus 64 ~~av~GA~~a------Gara~T~TSs~GL~--LM~e~l~~~ag~~~P~Vi~va~R~~~~~~-~~i~~dh~Dv-~~~R~~G 133 (1165)
T TIGR02176 64 AGAVHGALQT------GALTTTFTASQGLL--LMIPNMYKIAGELLPCVFHVSARAIAAHA-LSIFGDHQDV-MAARQTG 133 (1165)
T ss_pred HHHHHhHhhc------CCCEEEecChhHHH--HHHHHHHHHHhccCCEEEEEecCCCCCCC-CccCCCchHH-HHhhcCC
Confidence 4456666554 34555554433343 24677866665688999888775543211 0000112233 2346668
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 023827 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSF 269 (276)
Q Consensus 229 ~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 269 (276)
|..+. ..++.+++.....|...+.+.+.|+++-..-+|+
T Consensus 134 ~ivl~--s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~t 172 (1165)
T TIGR02176 134 FAMLA--SSSVQEVMDLALVAHLATIEARVPFMHFFDGFRT 172 (1165)
T ss_pred eEEEe--CCCHHHHHHHHHHHHHHHHhcCCCEEEEecCcee
Confidence 85554 3578888887777877777788899887776654
No 267
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=41.62 E-value=1.4e+02 Score=27.59 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=51.7
Q ss_pred ceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcC-CCHHHHHH
Q 023827 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG-NDALAIYS 244 (276)
Q Consensus 166 ~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg-~d~~~v~~ 244 (276)
.-+++.+ |+.|..........|++.++..+++++|-- . . .. ...++ -+.+-+|....-||. .|+. +.+
T Consensus 64 ~dTlvT~--GgiQSNh~r~tAavA~~lGl~~v~ile~~~-~-~---y~--~ngn~-Ll~~l~G~~~~~~~~~~d~~-~~~ 132 (323)
T COG2515 64 ADTLVTY--GGIQSNHVRQTAAVAAKLGLKCVLILENIE-A-N---YL--LNGNL-LLSKLMGAEVRAVDAGTDIG-INA 132 (323)
T ss_pred CcEEEEe--cccchhHHHHHHHHHHhcCCcEEEEEeccc-c-c---cc--cccch-hhhhhcCceEEEecCCCChh-hch
Confidence 3345544 577777777777788889999999998754 1 0 00 01111 234557888888874 5552 333
Q ss_pred HHHHHHHHhH-ccCCCEEEE
Q 023827 245 AVHAAREMAI-GEGRPILIE 263 (276)
Q Consensus 245 a~~~a~~~~r-~~~~P~lIe 263 (276)
-+++..+.++ ++++|.+|-
T Consensus 133 ~~~~~~e~~~~~g~kpyvIp 152 (323)
T COG2515 133 SAEELAEEVRKQGGKPYVIP 152 (323)
T ss_pred hhHHHHHHHHhcCCCCcEec
Confidence 3444333332 577898875
No 268
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=41.56 E-value=2.2e+02 Score=30.52 Aligned_cols=109 Identities=11% Similarity=0.112 Sum_probs=61.0
Q ss_pred ccccchhhhHHHHhhhcCCCceEEEEECCCcCCcch---HHHHHHH-HHHCCC--CEEEEEEeCCccccccccCccCCcc
Q 023827 146 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD---FHAALNF-SAVTEA--PVIFICRNNGWAISTPISDQFRSDG 219 (276)
Q Consensus 146 G~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~---~~Eal~~-A~~~~L--pvi~vv~nN~~~~~~~~~~~~~~~~ 219 (276)
..-++.++|+|+.. ++.++++=+-=|.|..|. +-+-++. ++.|+- ++|+.+- .+|...++.+.+...+.
T Consensus 657 ~a~~G~~~G~a~~g----~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sglv~~~p-~G~~g~g~~hsS~~~E~ 731 (929)
T TIGR00239 657 ESVLGFEYGYATTS----PRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSGLVMLLP-HGYEGQGPEHSSGRLER 731 (929)
T ss_pred HHHHHHHHhHHhcC----CCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccCeEEEec-CcCCCCCchhhccCHHH
Confidence 34455677777753 345544433334443322 4554566 566764 7555544 44655445443333333
Q ss_pred hhhhHhhcCceEEEEcCCCHHHHHHHHH-HHHHHhHccCCCEEEEE
Q 023827 220 AVVKGRAYGVRSIRVDGNDALAIYSAVH-AAREMAIGEGRPILIEV 264 (276)
Q Consensus 220 ~~~~a~a~G~~~~~vdg~d~~~v~~a~~-~a~~~~r~~~~P~lIe~ 264 (276)
+...+.--||.++... .+.+.+-.++ +|++ ..++|+++--
T Consensus 732 ~lql~~~~gl~Vv~ps--tpad~~~lLrrqa~r---~~~~Pvi~~~ 772 (929)
T TIGR00239 732 FLQLAAEQNMQVCVPT--TPAQVFHILRRQALR---GMRRPLVVMS 772 (929)
T ss_pred HHHHhCCCCCEEEecC--CHHHHHHHHHHHHHh---CCCCCEEEec
Confidence 4444455688887664 6888888888 4663 3478987643
No 269
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=40.67 E-value=2.6e+02 Score=24.83 Aligned_cols=94 Identities=18% Similarity=0.192 Sum_probs=50.8
Q ss_pred HHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHH-CCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEE
Q 023827 156 AYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAV-TEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRV 234 (276)
Q Consensus 156 A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~-~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~v 234 (276)
.+|..+...+...+.+.-|-.+..|.. +-+..+.+ -++|++. .| + +. .+.-...+..+|...+.+
T Consensus 74 ~~A~~~~~~GA~aisvlte~~~f~g~~-~~l~~v~~~v~iPvl~--kd--f-i~--------~~~qi~~a~~~GAD~VlL 139 (260)
T PRK00278 74 EIAKAYEAGGAACLSVLTDERFFQGSL-EYLRAARAAVSLPVLR--KD--F-II--------DPYQIYEARAAGADAILL 139 (260)
T ss_pred HHHHHHHhCCCeEEEEecccccCCCCH-HHHHHHHHhcCCCEEe--ee--e-cC--------CHHHHHHHHHcCCCEEEE
Confidence 455555555667788888888876664 43555544 4789884 11 1 11 011233455667777776
Q ss_pred cCCC--HHHHHHHHHHHHHHhHccCCCEEEEEEEe
Q 023827 235 DGND--ALAIYSAVHAAREMAIGEGRPILIEVKCL 267 (276)
Q Consensus 235 dg~d--~~~v~~a~~~a~~~~r~~~~P~lIe~~t~ 267 (276)
++.+ ...+.+. +++++.-+.-+++|+++.
T Consensus 140 i~~~l~~~~l~~l----i~~a~~lGl~~lvevh~~ 170 (260)
T PRK00278 140 IVAALDDEQLKEL----LDYAHSLGLDVLVEVHDE 170 (260)
T ss_pred EeccCCHHHHHHH----HHHHHHcCCeEEEEeCCH
Confidence 6544 2233333 333333456666666543
No 270
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=39.24 E-value=1.8e+02 Score=29.30 Aligned_cols=102 Identities=13% Similarity=0.134 Sum_probs=60.8
Q ss_pred CCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhh-------hHhhcCceE--EEE
Q 023827 164 KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVV-------KGRAYGVRS--IRV 234 (276)
Q Consensus 164 ~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~-------~a~a~G~~~--~~v 234 (276)
.|=+|+++.+|-+... ...|++..|..-+.|+|+-++-- +-|..+ ...... ..+.+|-.+ +.+
T Consensus 225 tDIvVLVVAadDGVmp-QT~EaIkhAk~A~VpiVvAinKi----Dkp~a~---pekv~~eL~~~gi~~E~~GGdVQvipi 296 (683)
T KOG1145|consen 225 TDIVVLVVAADDGVMP-QTLEAIKHAKSANVPIVVAINKI----DKPGAN---PEKVKRELLSQGIVVEDLGGDVQVIPI 296 (683)
T ss_pred ccEEEEEEEccCCccH-hHHHHHHHHHhcCCCEEEEEecc----CCCCCC---HHHHHHHHHHcCccHHHcCCceeEEEe
Confidence 4668888888888854 46799999999999998877522 112111 111111 123344333 222
Q ss_pred ---cCCCHHHHHHHHHH---HHHHhHccCCC---EEEEEEEecCCCCC
Q 023827 235 ---DGNDALAIYSAVHA---AREMAIGEGRP---ILIEVKCLSFSIFL 273 (276)
Q Consensus 235 ---dg~d~~~v~~a~~~---a~~~~r~~~~P---~lIe~~t~R~~g~~ 273 (276)
.|.+...+.+|+-. .++.--.-++| .+||..+++..|..
T Consensus 297 SAl~g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~ 344 (683)
T KOG1145|consen 297 SALTGENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPV 344 (683)
T ss_pred ecccCCChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccce
Confidence 47788787776632 22221123455 69999999988853
No 271
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=39.16 E-value=2.4e+02 Score=24.35 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=31.7
Q ss_pred eEEEEECCCcCCcchHHHHHHHHHHCC-C--CEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcC
Q 023827 167 CAVTYFGDGGTSEGDFHAALNFSAVTE-A--PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 236 (276)
Q Consensus 167 ~vv~~~GDG~~~~G~~~Eal~~A~~~~-L--pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg 236 (276)
++|.+.|-|+-. +++--+.+.+ + -+++|+.||.. -...++|+.+|++++..+.
T Consensus 2 i~vl~Sg~Gsn~-----~al~~~~~~~~l~~~i~~visn~~~------------~~~~~~A~~~gIp~~~~~~ 57 (207)
T PLN02331 2 LAVFVSGGGSNF-----RAIHDACLDGRVNGDVVVVVTNKPG------------CGGAEYARENGIPVLVYPK 57 (207)
T ss_pred EEEEEeCCChhH-----HHHHHHHHcCCCCeEEEEEEEeCCC------------ChHHHHHHHhCCCEEEecc
Confidence 566677766553 4454454433 4 46777777741 1234577888888887654
No 272
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=37.29 E-value=1.1e+02 Score=26.84 Aligned_cols=69 Identities=10% Similarity=0.032 Sum_probs=43.5
Q ss_pred CEEEEEEeCCccccccccC--ccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 195 PVIFICRNNGWAISTPISD--QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 195 pvi~vv~nN~~~~~~~~~~--~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
.+.+||.|..|.-..+... ......+++.++.+|+.+....-.+..++.+++++..+ .+..+.-+++-+
T Consensus 10 g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~nlt~~~~~~~l~~f~~-~~~~~~d~~v~~ 80 (243)
T cd00032 10 GLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVEVKNNLTAEEILEELKEFAS-PDHSDSDSFVCV 80 (243)
T ss_pred CEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHh-ccCCCCCeeEEE
Confidence 4667777766753111111 11234678888999999998887888999999988764 122334455444
No 273
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=36.13 E-value=1.5e+02 Score=22.49 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=30.4
Q ss_pred CCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC
Q 023827 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (276)
Q Consensus 163 ~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~ 204 (276)
.++..++++.--|... ++.+++..|...+.|+|.|..|..
T Consensus 46 ~~~d~vi~iS~sG~t~--~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 46 TPGDVVIAISNSGETD--ELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3466777776666665 467889999999999999988754
No 274
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=35.89 E-value=87 Score=28.53 Aligned_cols=14 Identities=14% Similarity=0.105 Sum_probs=8.0
Q ss_pred CCCEEEEEEeCCcc
Q 023827 193 EAPVIFICRNNGWA 206 (276)
Q Consensus 193 ~Lpvi~vv~nN~~~ 206 (276)
++|.|.|+.+..++
T Consensus 193 ~vP~IsVv~gpt~G 206 (285)
T TIGR00515 193 GLPYISVLTDPTTG 206 (285)
T ss_pred CCCEEEEEeCCcch
Confidence 45666666655544
No 275
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=35.63 E-value=1.4e+02 Score=25.51 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=33.7
Q ss_pred ceEEEEECCCcCCcchHHHHHHHHHHCCC--CEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCC
Q 023827 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEA--PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (276)
Q Consensus 166 ~~vv~~~GDG~~~~G~~~Eal~~A~~~~L--pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~ 237 (276)
+++|.+.|+|+..+. +.+++ ..-++ -+++|+.|+. .....++|+..|+|++.++-.
T Consensus 3 ki~vl~sg~gs~~~~-ll~~~---~~~~~~~~I~~vvs~~~------------~~~~~~~a~~~gIp~~~~~~~ 60 (200)
T PRK05647 3 RIVVLASGNGSNLQA-IIDAC---AAGQLPAEIVAVISDRP------------DAYGLERAEAAGIPTFVLDHK 60 (200)
T ss_pred eEEEEEcCCChhHHH-HHHHH---HcCCCCcEEEEEEecCc------------cchHHHHHHHcCCCEEEECcc
Confidence 578888899888552 33322 22234 3555565553 012456788899999886643
No 276
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=35.48 E-value=2.9e+02 Score=24.97 Aligned_cols=54 Identities=9% Similarity=0.046 Sum_probs=34.4
Q ss_pred CCceEEEEECCCcCCcchHHHHHHHHHHC-CC--CEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcC
Q 023827 164 KDACAVTYFGDGGTSEGDFHAALNFSAVT-EA--PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 236 (276)
Q Consensus 164 ~~~~vv~~~GDG~~~~G~~~Eal~~A~~~-~L--pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg 236 (276)
+.+.+|...|.|+. .|+|--+... ++ -++.|+-|+. +...+|+.+|+|++.++-
T Consensus 89 ~~ri~vl~Sg~gsn-----l~al~~~~~~~~~~~~i~~visn~~--------------~~~~lA~~~gIp~~~~~~ 145 (286)
T PRK06027 89 RKRVVILVSKEDHC-----LGDLLWRWRSGELPVEIAAVISNHD--------------DLRSLVERFGIPFHHVPV 145 (286)
T ss_pred CcEEEEEEcCCCCC-----HHHHHHHHHcCCCCcEEEEEEEcCh--------------hHHHHHHHhCCCEEEecc
Confidence 34677777777554 3455555443 33 4677776652 455678899999988653
No 277
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=35.46 E-value=1.6e+02 Score=29.10 Aligned_cols=125 Identities=17% Similarity=0.161 Sum_probs=67.4
Q ss_pred ccccccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccC-
Q 023827 138 YFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR- 216 (276)
Q Consensus 138 ~~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~- 216 (276)
|+-++|+-+...--|=|++++ |=.++++..|-++.. +..||++-|...+.|+++.++- ++-+......
T Consensus 59 FiDTPGHeAFt~mRaRGa~vt------DIaILVVa~dDGv~p-QTiEAI~hak~a~vP~iVAiNK----iDk~~~np~~v 127 (509)
T COG0532 59 FIDTPGHEAFTAMRARGASVT------DIAILVVAADDGVMP-QTIEAINHAKAAGVPIVVAINK----IDKPEANPDKV 127 (509)
T ss_pred EEcCCcHHHHHHHHhcCCccc------cEEEEEEEccCCcch-hHHHHHHHHHHCCCCEEEEEec----ccCCCCCHHHH
Confidence 344455555544444444443 557788888888854 4679999999999998877742 1111110000
Q ss_pred Ccch---hhhHhhcCceEEEE-----cCCCHHHHHHHHH---HHHHHhHccCC---CEEEEEEEecCCCCC
Q 023827 217 SDGA---VVKGRAYGVRSIRV-----DGNDALAIYSAVH---AAREMAIGEGR---PILIEVKCLSFSIFL 273 (276)
Q Consensus 217 ~~~~---~~~a~a~G~~~~~v-----dg~d~~~v~~a~~---~a~~~~r~~~~---P~lIe~~t~R~~g~~ 273 (276)
...+ -=..+.||-.+..| .|..+.++..++. +..+.-..-++ =++||++..+..|+.
T Consensus 128 ~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~v 198 (509)
T COG0532 128 KQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPV 198 (509)
T ss_pred HHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCce
Confidence 0000 01234455444444 3555556555442 22221111123 379999999988863
No 278
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=34.03 E-value=2e+02 Score=21.46 Aligned_cols=63 Identities=14% Similarity=0.158 Sum_probs=31.6
Q ss_pred CCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCH
Q 023827 177 TSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 239 (276)
Q Consensus 177 ~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~ 239 (276)
...-.+..+..+|..++.++.++-..+.-..............+.+.++..+.+...+.+.|+
T Consensus 11 ~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 73 (124)
T cd01987 11 NAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTLPGDDV 73 (124)
T ss_pred chHHHHHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCcH
Confidence 333356667777777777764443332211000000000112344566777888877776665
No 279
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=33.23 E-value=3.2e+02 Score=23.59 Aligned_cols=78 Identities=18% Similarity=0.182 Sum_probs=46.0
Q ss_pred ceEEEEECCCcCCcchHHHHHHHHHHCC-CC--EEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCC---CH
Q 023827 166 ACAVTYFGDGGTSEGDFHAALNFSAVTE-AP--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN---DA 239 (276)
Q Consensus 166 ~~vv~~~GDG~~~~G~~~Eal~~A~~~~-Lp--vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~---d~ 239 (276)
+.+|.+.|-|+-. +|+--|..-+ +| +..|+.|+. .-.-.++|+.+|+++..++-. +-
T Consensus 2 ki~VlaSG~GSNl-----qaiida~~~~~~~a~i~~Visd~~------------~A~~lerA~~~gIpt~~~~~k~~~~r 64 (200)
T COG0299 2 KIAVLASGNGSNL-----QAIIDAIKGGKLDAEIVAVISDKA------------DAYALERAAKAGIPTVVLDRKEFPSR 64 (200)
T ss_pred eEEEEEeCCcccH-----HHHHHHHhcCCCCcEEEEEEeCCC------------CCHHHHHHHHcCCCEEEeccccCCCH
Confidence 4567777766653 4455555533 33 666666653 112346788899998877643 33
Q ss_pred HHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 240 LAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 240 ~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
++...++.++++ ..+|=+|-+
T Consensus 65 ~~~d~~l~~~l~----~~~~dlvvL 85 (200)
T COG0299 65 EAFDRALVEALD----EYGPDLVVL 85 (200)
T ss_pred HHHHHHHHHHHH----hcCCCEEEE
Confidence 456666666554 356766554
No 280
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=33.01 E-value=3.6e+02 Score=28.86 Aligned_cols=106 Identities=8% Similarity=0.066 Sum_probs=58.5
Q ss_pred cccchhhhHHHHhhhcCCCceEE--EEECCCcC-CcchHHHHHHHH-HHCCC--CEEEEEEeCCccccccccCccCCcch
Q 023827 147 TQLPHAVGAAYALKMDRKDACAV--TYFGDGGT-SEGDFHAALNFS-AVTEA--PVIFICRNNGWAISTPISDQFRSDGA 220 (276)
Q Consensus 147 ~~l~~A~G~A~a~k~~~~~~~vv--~~~GDG~~-~~G~~~Eal~~A-~~~~L--pvi~vv~nN~~~~~~~~~~~~~~~~~ 220 (276)
.-++.++|+|+.. +...+| .-+||=.. .|-.+.+-++.+ +.|+. ++++.+-. +|...++.+.+ ..+
T Consensus 656 ~~~G~~~G~a~~g----~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~sglv~~~p~-G~~g~g~~hsS---~~~ 727 (924)
T PRK09404 656 AVLGFEYGYSTAE----PNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSGLVMLLPH-GYEGQGPEHSS---ARL 727 (924)
T ss_pred HHHHHHHHHHhcC----CCCceEEEEeccccccchHHHHHHHHHHHHHHhcCccCeEEEecC-cCCCCChhhhc---cCH
Confidence 3355677777753 343333 45555433 112255556765 67765 76655544 35544443332 234
Q ss_pred hhhHhhc---CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 221 VVKGRAY---GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 221 ~~~a~a~---G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
......+ ||.++... .+.+.+-.++.+.. |..++|+++--
T Consensus 728 E~~l~~~~~~gl~Vv~ps--tpad~~~lLr~q~~--r~~r~Pvv~~~ 770 (924)
T PRK09404 728 ERFLQLCAEDNMQVCNPT--TPAQYFHLLRRQAL--RPFRKPLVVMT 770 (924)
T ss_pred HHHHHhCCCCCCEEEecC--CHHHHHHHHHHHHh--hCCCCCEEEec
Confidence 4444333 88887664 67888888877542 23458987654
No 281
>PLN03013 cysteine synthase
Probab=32.45 E-value=2.2e+02 Score=27.61 Aligned_cols=54 Identities=19% Similarity=0.087 Sum_probs=33.3
Q ss_pred EEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCC
Q 023827 168 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (276)
Q Consensus 168 vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~ 237 (276)
+++-.-.|-+..+. ...|..+++|+++++.++- ...-.+..++||.+++.++++
T Consensus 177 ~VVeaSSGN~G~AL----A~~a~~~G~~~~VvvP~~~------------s~~K~~~ira~GAeVi~v~~~ 230 (429)
T PLN03013 177 VLVEPTSGNTGIGL----AFIAASRGYRLILTMPASM------------SMERRVLLKAFGAELVLTDPA 230 (429)
T ss_pred EEEEECCcHHHHHH----HHHHHHcCCCEEEEECCCC------------cHHHHHHHHHcCCEEEEECCC
Confidence 34444444443332 3355668999998886542 122345678899999988764
No 282
>PRK09932 glycerate kinase II; Provisional
Probab=31.64 E-value=2.3e+02 Score=26.97 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=26.2
Q ss_pred EEEEECCCcCC----cch-HHHHHHHHHHCCCCEEEEEE
Q 023827 168 AVTYFGDGGTS----EGD-FHAALNFSAVTEAPVIFICR 201 (276)
Q Consensus 168 vv~~~GDG~~~----~G~-~~Eal~~A~~~~Lpvi~vv~ 201 (276)
=++++|.|.+. .|- ...-...|..++.|++.|+-
T Consensus 286 DlVITGEG~~D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G 324 (381)
T PRK09932 286 ALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAG 324 (381)
T ss_pred CEEEECCCcccccccCCccHHHHHHHHHHcCCCEEEEec
Confidence 48999999982 233 45567788889999999985
No 283
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=31.48 E-value=3e+02 Score=25.06 Aligned_cols=54 Identities=6% Similarity=-0.123 Sum_probs=36.1
Q ss_pred CCceEEEEECCCcCCcchHHHHHHHHHHCC-C--CEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcC
Q 023827 164 KDACAVTYFGDGGTSEGDFHAALNFSAVTE-A--PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 236 (276)
Q Consensus 164 ~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~-L--pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg 236 (276)
+.+.+|.+.|.|+.. +++-.+.+.+ + .++.|+-||. +..++|+.+|+|++.++-
T Consensus 93 ~~kiavl~Sg~g~nl-----~al~~~~~~~~l~~~i~~visn~~--------------~~~~~A~~~gIp~~~~~~ 149 (289)
T PRK13010 93 RPKVVIMVSKFDHCL-----NDLLYRWRMGELDMDIVGIISNHP--------------DLQPLAVQHDIPFHHLPV 149 (289)
T ss_pred CeEEEEEEeCCCccH-----HHHHHHHHCCCCCcEEEEEEECCh--------------hHHHHHHHcCCCEEEeCC
Confidence 346777777766553 4566666543 4 4677777763 345789999999998753
No 284
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=30.68 E-value=1.2e+02 Score=28.93 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=7.9
Q ss_pred hhhhHhhcCceEEEEc
Q 023827 220 AVVKGRAYGVRSIRVD 235 (276)
Q Consensus 220 ~~~~a~a~G~~~~~vd 235 (276)
++++++.||.++..++
T Consensus 95 ~~~ia~~~g~~v~~~~ 110 (383)
T COG0075 95 FAEIAERYGAEVVVLE 110 (383)
T ss_pred HHHHHHHhCCceEEEe
Confidence 4445555555554443
No 285
>PLN02522 ATP citrate (pro-S)-lyase
Probab=30.50 E-value=2.6e+02 Score=28.40 Aligned_cols=85 Identities=14% Similarity=0.107 Sum_probs=52.1
Q ss_pred CCCceEEEEECC-CcCCcchHHHHHHHHHHCCCCEEEEEEeCCc-------cccccccCccCC------cchhhhHhhcC
Q 023827 163 RKDACAVTYFGD-GGTSEGDFHAALNFSAVTEAPVIFICRNNGW-------AISTPISDQFRS------DGAVVKGRAYG 228 (276)
Q Consensus 163 ~~~~~vv~~~GD-G~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~-------~~~~~~~~~~~~------~~~~~~a~a~G 228 (276)
.++-++++++|+ |.-.+-.|.|++.-+. .+-|||.++---.- +++ .+. .... ....+.++..|
T Consensus 220 Dp~Tk~IvlygEiGg~~e~~f~ea~~~a~-~~KPVVa~kaGrsa~~~~~~aa~g-HtG-Aiag~~~~ta~~k~aAlr~aG 296 (608)
T PLN02522 220 IPQIKMIVVLGELGGRDEYSLVEALKQGK-VSKPVVAWVSGTCARLFKSEVQFG-HAG-AKSGGDMESAQAKNKALKDAG 296 (608)
T ss_pred CCCCCEEEEEEecCchhHHHHHHHHHHhc-CCCCEEEEeccCCCccCccccccc-ccc-ccccCCCccHHHHHHHHHHCC
Confidence 456789999999 8887766666554433 56699888743221 111 000 0111 12445567778
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhH
Q 023827 229 VRSIRVDGNDALAIYSAVHAAREMAI 254 (276)
Q Consensus 229 ~~~~~vdg~d~~~v~~a~~~a~~~~r 254 (276)
+... ++++++.++++++++...
T Consensus 297 v~vv----~s~~El~~~~~~~~~~~~ 318 (608)
T PLN02522 297 AIVP----TSFEALEAAIKETFEKLV 318 (608)
T ss_pred CeEe----CCHHHHHHHHHHHHHHHH
Confidence 7654 388899999988877554
No 286
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=30.31 E-value=1e+02 Score=23.32 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=28.4
Q ss_pred ceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCc
Q 023827 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW 205 (276)
Q Consensus 166 ~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~ 205 (276)
..+++.+.+-....|..+| +-.|...+.|++.+..+.+.
T Consensus 63 D~via~l~~~~~d~Gt~~E-lG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 63 DIVIANLDGFRPDSGTAFE-LGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp SEEEEEECSSS--HHHHHH-HHHHHHTTSEEEEEECCCCT
T ss_pred CEEEEECCCCCCCCcHHHH-HHHHHHCCCEEEEEEcCCcc
Confidence 4566666554567788888 88999999999999887664
No 287
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=30.21 E-value=3.8e+02 Score=23.54 Aligned_cols=107 Identities=11% Similarity=0.025 Sum_probs=55.4
Q ss_pred cchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCcccccccc----CccC---Ccchh
Q 023827 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS----DQFR---SDGAV 221 (276)
Q Consensus 149 l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~----~~~~---~~~~~ 221 (276)
+--.+|-.++.++.+.+--+++-+..+++-- |..+|...++|++++=..+..+.....+ .... .-.+.
T Consensus 95 ~~~~v~~~la~~~~~~~~D~Vvtv~~~GI~l-----A~~lA~~L~~p~vi~Rk~~~~~~~~~v~~y~s~s~~~~~~~~l~ 169 (238)
T PRK08558 95 FLRLIAPVVAERFMGLRVDVVLTAATDGIPL-----AVAIASYFGADLVYAKKSKETGVEKFYEEYQRLASGIEVTLYLP 169 (238)
T ss_pred HHHHHHHHHHHHccCCCCCEEEEECcccHHH-----HHHHHHHHCcCEEEEEecCCCCCcceEEEeeccCCCceeEEEec
Confidence 4556788888887654434555555555532 3557888899988765444332211100 0000 00111
Q ss_pred hhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEE
Q 023827 222 VKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (276)
Q Consensus 222 ~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe 263 (276)
+.+-.-|-+++.|| |+.+-=.++..+.+.+++. +..++.
T Consensus 170 ~~~l~~G~rVLIVD--Dvi~TG~Tl~~~~~ll~~~-ga~vvg 208 (238)
T PRK08558 170 ASALKKGDRVLIVD--DIIRSGETQRALLDLARQA-GADVVG 208 (238)
T ss_pred HHHcCCcCEEEEEe--cccccCHHHHHHHHHHHHc-CCEEEE
Confidence 22223488888887 5555445555555555544 334333
No 288
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=30.17 E-value=1.9e+02 Score=24.99 Aligned_cols=67 Identities=21% Similarity=0.280 Sum_probs=49.5
Q ss_pred cCCCceEEEEECCCcC--CcchHHHHHHHHHHCCC-CEEEEEE--eCCccccccccCccCCcchhhhHhhcCceEEEEc
Q 023827 162 DRKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICR--NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (276)
Q Consensus 162 ~~~~~~vv~~~GDG~~--~~G~~~Eal~~A~~~~L-pvi~vv~--nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vd 235 (276)
..|..+.....=||.. -.|...-++.+|..-++ |.-+||+ |. .......+++.++++-+|++.++++
T Consensus 121 ~~PGHVfpL~A~~ggVl~R~GHTEasVdLarlAGl~Pa~VicEi~~~-------dG~mar~~~~~~fa~~h~l~~iti~ 192 (203)
T COG0108 121 RRPGHVFPLRAKDGGVLERRGHTEAAVDLARLAGLKPAGVICEIMND-------DGTMARLPELEEFAKEHGLPVITIE 192 (203)
T ss_pred CCCCCeeeeeeccCCeeccCChHHHHHHHHHHcCCCCcEEEEEEeCC-------CccccChHHHHHHHHHcCCcEEEHH
Confidence 3566777777788887 46888788999999999 8877776 32 1122345678889999999999864
No 289
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=30.08 E-value=1.9e+02 Score=25.03 Aligned_cols=48 Identities=21% Similarity=0.147 Sum_probs=34.6
Q ss_pred hhhhHhhcCceEEEEc-----CCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 023827 220 AVVKGRAYGVRSIRVD-----GNDALAIYSAVHAAREMAIGEGRPILIEVKCLS 268 (276)
Q Consensus 220 ~~~~a~a~G~~~~~vd-----g~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 268 (276)
....|+.+|.+..+.| ..|..++.+-++++...||+ +|..+...+.+.
T Consensus 133 a~~~A~~~gvp~~~rdvfLD~~~~~~~I~~ql~~~~~~A~~-~G~aI~Igh~~p 185 (213)
T PF04748_consen 133 APQVAKELGVPAARRDVFLDNDQDEAAIRRQLDQAARIARK-QGSAIAIGHPRP 185 (213)
T ss_dssp HHHHHHHCT--EEE-SEETTST-SHHHHHHHHHHHHHHHHC-CSEEEEEEE-SC
T ss_pred HHHHHHHcCCCEEeeceecCCCCCHHHHHHHHHHHHHhhhh-cCcEEEEEcCCH
Confidence 5567888999988774 36889999999999999987 578887776654
No 290
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=30.01 E-value=1.4e+02 Score=22.77 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=31.8
Q ss_pred CCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC
Q 023827 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (276)
Q Consensus 163 ~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~ 204 (276)
+++..++++.--|... +..+++..|...+.|+|.|..+..
T Consensus 46 ~~~dl~I~iS~SG~t~--~~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 46 TEKSVVILASHSGNTK--ETVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred CCCcEEEEEeCCCCCh--HHHHHHHHHHHcCCeEEEEECCCC
Confidence 3467788888888776 467889999999999999887544
No 291
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=29.60 E-value=83 Score=31.13 Aligned_cols=14 Identities=14% Similarity=-0.085 Sum_probs=10.3
Q ss_pred CCCEEEEEEeCCcc
Q 023827 193 EAPVIFICRNNGWA 206 (276)
Q Consensus 193 ~Lpvi~vv~nN~~~ 206 (276)
.+|.|.+|.+...+
T Consensus 154 ~iP~Isvv~G~~~G 167 (512)
T TIGR01117 154 VVPQISAIMGPCAG 167 (512)
T ss_pred CCcEEEEEecCCCc
Confidence 35888888887664
No 292
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=29.58 E-value=2.9e+02 Score=24.77 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=25.2
Q ss_pred HHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCC
Q 023827 187 NFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (276)
Q Consensus 187 ~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~ 237 (276)
..|.++++|.++++-.+- .+.-.+..+.||..++.++++
T Consensus 74 ~~a~~~Gl~~~i~vp~~~------------~~~k~~~~~~~GA~v~~~~~~ 112 (298)
T TIGR01139 74 MVAAARGYKLILTMPETM------------SIERRKLLKAYGAELVLTPGA 112 (298)
T ss_pred HHHHHcCCeEEEEeCCcc------------CHHHHHHHHHcCCEEEEECCC
Confidence 355668888877775431 011245567888888888875
No 293
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=28.91 E-value=3.7e+02 Score=23.85 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=20.0
Q ss_pred EEECCCcC--CcchHHHHHHHHHHC---CCCEEEEEEeC
Q 023827 170 TYFGDGGT--SEGDFHAALNFSAVT---EAPVIFICRNN 203 (276)
Q Consensus 170 ~~~GDG~~--~~G~~~Eal~~A~~~---~Lpvi~vv~nN 203 (276)
.|--||+. ..|.+.-++.+|..+ +-.++|++.+.
T Consensus 3 ~ir~Da~~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~ 41 (279)
T TIGR03590 3 LFRADASSEIGLGHVMRCLTLARALHAQGAEVAFACKPL 41 (279)
T ss_pred EEEecCCccccccHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 44456665 456666777776654 23667776543
No 294
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=28.68 E-value=1.6e+02 Score=22.98 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=27.3
Q ss_pred CCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeC
Q 023827 164 KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN 203 (276)
Q Consensus 164 ~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN 203 (276)
++..++.+.++|+..+ ...+.+..+...+.|++.|..++
T Consensus 61 ~~~~vi~is~~g~t~~-~~~~~~~~~~~~~~~vi~it~~~ 99 (153)
T cd05009 61 EGTPVIFLAPEDRLEE-KLESLIKEVKARGAKVIVITDDG 99 (153)
T ss_pred CCCcEEEEecCChhHH-HHHHHHHHHHHcCCEEEEEecCC
Confidence 4567888887886532 24566777778888888887654
No 295
>PRK06381 threonine synthase; Validated
Probab=28.44 E-value=4.5e+02 Score=23.78 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=27.0
Q ss_pred HHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCC
Q 023827 187 NFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (276)
Q Consensus 187 ~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~ 237 (276)
..|+..++|.++++..+. ...-.+..++||.+++.+++.
T Consensus 80 ~~aa~~G~~~~ivvp~~~------------~~~~~~~l~~~GA~V~~~~~~ 118 (319)
T PRK06381 80 YFARLYGLKAVIFIPRSY------------SNSRVKEMEKYGAEIIYVDGK 118 (319)
T ss_pred HHHHHcCCcEEEEECCCC------------CHHHHHHHHHcCCEEEEcCCC
Confidence 345668899988886431 112335788899999999874
No 296
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=28.37 E-value=4.9e+02 Score=25.49 Aligned_cols=150 Identities=13% Similarity=0.033 Sum_probs=68.6
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccccccccccchhhhHHHHhhhcCCCceEEEEECCCcC
Q 023827 98 GVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT 177 (276)
Q Consensus 98 ~~~~~~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~ 177 (276)
+.++..|.++++++..+..-. +..||.-...... +.+.-...+ -|-++=.++..-....+.+++|++|=|+=
T Consensus 299 a~~~~lG~~~e~i~~~l~~~~--~v~GRmE~v~~~~--~~v~VDyAH----nPd~le~~L~~~~~~~~g~li~VfG~gGD 370 (475)
T COG0769 299 AAALALGVDLEDILAGLETLK--PVPGRMELVNIGG--KLVIVDYAH----NPDGLEKALRAVRLHAAGRLIVVFGCGGD 370 (475)
T ss_pred HHHHHcCCCHHHHHHHHHhcC--CCCCcceEecCCC--CeEEEEecc----ChHHHHHHHHHHHhhcCCcEEEEECccCC
Confidence 345568999999988765432 1346655444331 121111111 23333333322111123447777665544
Q ss_pred -CcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceE-EEEcCCCHHHHHHHHHHHHHHhHc
Q 023827 178 -SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRS-IRVDGNDALAIYSAVHAAREMAIG 255 (276)
Q Consensus 178 -~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~-~~vdg~d~~~v~~a~~~a~~~~r~ 255 (276)
..+-.|. +...+....++++|..+|- ..+ .+..-+.++.+++.-+. +.+ ..+-.+|++.|++.+.
T Consensus 371 rD~~kr~~-mg~ia~~~ad~vivt~dnp------R~e-dp~~i~~~i~~g~~~~~~~~~----~~dr~~AI~~ai~~a~- 437 (475)
T COG0769 371 RDKSKRPD-MGAIAEQLADIVIVTSDNP------RSE-DPAVILADILAGIEAPEKYEI----IEDREEAIRKALDLAK- 437 (475)
T ss_pred CCcccccc-hHHHHHhcCCcEEEcCCCC------CCc-CHHHHHHHHHhccCCccceec----chhHHHHHHHHHHhhc-
Confidence 2233332 3333344447788877663 111 01112333444332221 111 2245567777777654
Q ss_pred cCCCEEEEEEEecCCCCC
Q 023827 256 EGRPILIEVKCLSFSIFL 273 (276)
Q Consensus 256 ~~~P~lIe~~t~R~~g~~ 273 (276)
.++.++.+ ..||.
T Consensus 438 -~~D~vlia----gkGhe 450 (475)
T COG0769 438 -EGDVVLIA----GKGHE 450 (475)
T ss_pred -cCCEEEEe----eccch
Confidence 45665553 45553
No 297
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=28.37 E-value=99 Score=26.26 Aligned_cols=36 Identities=17% Similarity=0.099 Sum_probs=26.0
Q ss_pred ceEEEEECCC-cCCcchHHHHHHHHHHCCCCEEEEEE
Q 023827 166 ACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICR 201 (276)
Q Consensus 166 ~~vv~~~GDG-~~~~G~~~Eal~~A~~~~Lpvi~vv~ 201 (276)
.++++|+|++ +..++.+++.+..++..++.+-+|..
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~ 144 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINF 144 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEe
Confidence 3667777777 66788888878877778877655543
No 298
>PRK07328 histidinol-phosphatase; Provisional
Probab=27.41 E-value=3.5e+02 Score=23.89 Aligned_cols=76 Identities=14% Similarity=0.188 Sum_probs=49.2
Q ss_pred HHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCE
Q 023827 182 FHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPI 260 (276)
Q Consensus 182 ~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-~vdg~d~~~v~~a~~~a~~~~r~~~~P~ 260 (276)
+.+.+..++..+..+ =|+.+++. .+.....+...+.++++.+|.+.. --|.|++.++-..+.+|.+.+++.+=+.
T Consensus 179 ~~~il~~~~~~g~~l--EiNt~~~r--~~~~~~yp~~~il~~~~~~g~~itigSDAH~~~~vg~~~~~a~~~l~~~G~~~ 254 (269)
T PRK07328 179 YEEALDVIAAAGLAL--EVNTAGLR--KPVGEIYPSPALLRACRERGIPVVLGSDAHRPEEVGFGFAEALALLKEVGYTE 254 (269)
T ss_pred HHHHHHHHHHcCCEE--EEEchhhc--CCCCCCCCCHHHHHHHHHcCCCEEEeCCCCCHHHHhccHHHHHHHHHHcCCcE
Confidence 456677777777542 12222222 122334566779999999999843 3377999999878888888887765444
Q ss_pred E
Q 023827 261 L 261 (276)
Q Consensus 261 l 261 (276)
+
T Consensus 255 ~ 255 (269)
T PRK07328 255 T 255 (269)
T ss_pred E
Confidence 3
No 299
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=27.31 E-value=2.1e+02 Score=28.43 Aligned_cols=95 Identities=20% Similarity=0.188 Sum_probs=48.6
Q ss_pred ceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEe-C-Cccccc-cccCccCCcchh---hhHhhcCceEEEEc-CCC
Q 023827 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN-N-GWAIST-PISDQFRSDGAV---VKGRAYGVRSIRVD-GND 238 (276)
Q Consensus 166 ~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~n-N-~~~~~~-~~~~~~~~~~~~---~~a~a~G~~~~~vd-g~d 238 (276)
.-.|+.+|=|+++- .-++.=|-..++|||+||-- | .-+.+. -.+......||. ++++..-+.+.-++ ++|
T Consensus 68 ~a~VtTfgVGeLSA---lNGIAGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~ 144 (561)
T KOG1184|consen 68 GACVTTFGVGELSA---LNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIED 144 (561)
T ss_pred eEEEEEeccchhhh---hcccchhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhh
Confidence 45777788888851 11244445568999999841 1 111111 111122233332 33333333333332 222
Q ss_pred -HHHHHHHHHHHHHHhHccCCCEEEEEEEe
Q 023827 239 -ALAIYSAVHAAREMAIGEGRPILIEVKCL 267 (276)
Q Consensus 239 -~~~v~~a~~~a~~~~r~~~~P~lIe~~t~ 267 (276)
++++.++++.+.. ..+|+-|.+-+.
T Consensus 145 A~~~ID~aI~~~~~----~~rPVYi~iP~n 170 (561)
T KOG1184|consen 145 APEQIDKAIRTALK----ESKPVYIGVPAN 170 (561)
T ss_pred hHHHHHHHHHHHHH----hcCCeEEEeecc
Confidence 3456666666665 579999988653
No 300
>PLN02618 tryptophan synthase, beta chain
Probab=26.68 E-value=3.1e+02 Score=26.37 Aligned_cols=70 Identities=23% Similarity=0.152 Sum_probs=37.6
Q ss_pred hhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceE
Q 023827 152 AVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRS 231 (276)
Q Consensus 152 A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~ 231 (276)
+++.++..+..++ ..+++-.|-|-. |. .....|+..+++.++++-.+. + ..+ .. -..+.+.||.++
T Consensus 107 a~~~~l~A~~~g~-~~vIaesgaGNh--G~--AlA~aaa~~Gl~~~I~m~~~~--~----~~~--~~-nv~~mr~lGA~V 172 (410)
T PLN02618 107 AVAQALLAKRLGK-KRIIAETGAGQH--GV--ATATVCARFGLECIVYMGAQD--M----ERQ--AL-NVFRMRLLGAEV 172 (410)
T ss_pred HHHHHHHHHHcCC-CEEEEEcCcHHH--HH--HHHHHHHHcCCcEEEEEcCCc--h----hhh--hh-hHHHHHHCCCEE
Confidence 4445444444443 446665554443 22 113456678999888775432 1 000 11 123578899999
Q ss_pred EEEc
Q 023827 232 IRVD 235 (276)
Q Consensus 232 ~~vd 235 (276)
+.|+
T Consensus 173 i~v~ 176 (410)
T PLN02618 173 RPVH 176 (410)
T ss_pred EEEe
Confidence 9984
No 301
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=26.67 E-value=4.1e+02 Score=24.03 Aligned_cols=53 Identities=8% Similarity=0.050 Sum_probs=34.2
Q ss_pred CceEEEEECCCcCCcchHHHHHHHHHHCC-C--CEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcC
Q 023827 165 DACAVTYFGDGGTSEGDFHAALNFSAVTE-A--PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 236 (276)
Q Consensus 165 ~~~vv~~~GDG~~~~G~~~Eal~~A~~~~-L--pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg 236 (276)
.+.+|...|-|+. .+++--+...+ + .++.|+-||. ++..+|+.+|+|++.++-
T Consensus 85 ~ki~vl~Sg~g~n-----l~~l~~~~~~g~l~~~i~~visn~~--------------~~~~~A~~~gIp~~~~~~ 140 (280)
T TIGR00655 85 KRVAILVSKEDHC-----LGDLLWRWYSGELDAEIALVISNHE--------------DLRSLVERFGIPFHYIPA 140 (280)
T ss_pred cEEEEEEcCCChh-----HHHHHHHHHcCCCCcEEEEEEEcCh--------------hHHHHHHHhCCCEEEcCC
Confidence 4566777776554 34565555543 4 4677777662 345578889999988774
No 302
>PRK06988 putative formyltransferase; Provisional
Probab=26.51 E-value=2.6e+02 Score=25.63 Aligned_cols=59 Identities=10% Similarity=0.098 Sum_probs=35.1
Q ss_pred EEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEc
Q 023827 168 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (276)
Q Consensus 168 vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vd 235 (276)
-++|+|.+.+..- +|......+..++.|+-+..- +.. .....++.++|+..|++++..+
T Consensus 4 kIvf~Gs~~~a~~----~L~~L~~~~~~i~~Vvt~~d~----~~~-~~~~~~v~~~A~~~gip~~~~~ 62 (312)
T PRK06988 4 RAVVFAYHNVGVR----CLQVLLARGVDVALVVTHEDN----PTE-NIWFGSVAAVAAEHGIPVITPA 62 (312)
T ss_pred EEEEEeCcHHHHH----HHHHHHhCCCCEEEEEcCCCC----Ccc-CcCCCHHHHHHHHcCCcEEccc
Confidence 3778888887542 243333456677776654311 111 1123467889999999998744
No 303
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=26.36 E-value=2.8e+02 Score=28.12 Aligned_cols=80 Identities=20% Similarity=0.150 Sum_probs=40.8
Q ss_pred ccccchhhhHHHHhhhcC-------CCceEEEEECCCcCCcc-----hHHHHHHHHHH---CCCCEEEEEEeCCcccccc
Q 023827 146 ATQLPHAVGAAYALKMDR-------KDACAVTYFGDGGTSEG-----DFHAALNFSAV---TEAPVIFICRNNGWAISTP 210 (276)
Q Consensus 146 G~~l~~A~G~A~a~k~~~-------~~~~vv~~~GDG~~~~G-----~~~Eal~~A~~---~~Lpvi~vv~nN~~~~~~~ 210 (276)
|.+-+++.|+..|.+... ..+.+++++.||..+.+ ...++...|.. .++++++|-..++
T Consensus 538 gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~~~~i~~~vIdt~~~------ 611 (633)
T TIGR02442 538 GGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIAAKLAARGILFVVIDTESG------ 611 (633)
T ss_pred CCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHHHHHHHhcCCeEEEEeCCCC------
Confidence 445555666655554321 34578888899988653 23344444443 3444443311110
Q ss_pred ccCccCCcchhhhHhhcCceEEEE
Q 023827 211 ISDQFRSDGAVVKGRAYGVRSIRV 234 (276)
Q Consensus 211 ~~~~~~~~~~~~~a~a~G~~~~~v 234 (276)
........++|+..|..++.+
T Consensus 612 ---~~~~~~~~~lA~~~gg~y~~l 632 (633)
T TIGR02442 612 ---FVRLGLAEDLARALGGEYVRL 632 (633)
T ss_pred ---CcchhHHHHHHHhhCCeEEec
Confidence 111223556677777776654
No 304
>PRK01322 6-carboxyhexanoate--CoA ligase; Provisional
Probab=25.92 E-value=2.4e+02 Score=25.16 Aligned_cols=76 Identities=21% Similarity=0.255 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHCC-CC-E---EEEEEeCCcccc---ccccCccCCcchhhhHhhcCceEEEEcCC-CHHHHHHHHHHHHH
Q 023827 181 DFHAALNFSAVTE-AP-V---IFICRNNGWAIS---TPISDQFRSDGAVVKGRAYGVRSIRVDGN-DALAIYSAVHAARE 251 (276)
Q Consensus 181 ~~~Eal~~A~~~~-Lp-v---i~vv~nN~~~~~---~~~~~~~~~~~~~~~a~a~G~~~~~vdg~-d~~~v~~a~~~a~~ 251 (276)
.+.|||.+|+.-- -| + +.+-+|-.|-.. +..-.-...+++...+...|.+++-|++. |++++ ++
T Consensus 157 r~~eAlaLAsKV~~~pgivAElC~SDDP~YtTGYVA~~~~gY~RI~~mK~~G~~~GGRvffv~~~~~~~~~-------i~ 229 (242)
T PRK01322 157 RTVDALALASKVIAHPGVIAELCWSDDPDYTTGYVATKKLGYHRITNLKEEGTPYGGRIFFVDDSIDLEEL-------IS 229 (242)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCCCCeeEEEEeCCCCeEeCccccccCCCCCCEEEEEeCccCHHHH-------HH
Confidence 5889999998754 35 3 333344455321 11101123455666777789999999985 54443 33
Q ss_pred HhHccCCCEEEEEE
Q 023827 252 MAIGEGRPILIEVK 265 (276)
Q Consensus 252 ~~r~~~~P~lIe~~ 265 (276)
+.+ ++|+||+..
T Consensus 230 yLE--~~pVLI~~~ 241 (242)
T PRK01322 230 YLE--NKPVLIVYE 241 (242)
T ss_pred HHh--cCcEEEEec
Confidence 332 579999864
No 305
>PRK10342 glycerate kinase I; Provisional
Probab=25.80 E-value=3.8e+02 Score=25.53 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=26.3
Q ss_pred EEEEECCCcCC----cch-HHHHHHHHHHCCCCEEEEEEe
Q 023827 168 AVTYFGDGGTS----EGD-FHAALNFSAVTEAPVIFICRN 202 (276)
Q Consensus 168 vv~~~GDG~~~----~G~-~~Eal~~A~~~~Lpvi~vv~n 202 (276)
=++++|.|.+. +|- ..+-...|.+++.|++.|+-.
T Consensus 286 DLVITGEG~~D~QTl~GK~p~gVa~~A~~~~vPviai~G~ 325 (381)
T PRK10342 286 TLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGS 325 (381)
T ss_pred CEEEECCCcCcccccCCccHHHHHHHHHHhCCCEEEEecc
Confidence 48999999982 222 345567888899999999853
No 306
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=25.65 E-value=3.1e+02 Score=26.23 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=38.4
Q ss_pred hhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceE
Q 023827 152 AVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRS 231 (276)
Q Consensus 152 A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~ 231 (276)
++|.++..+..+. ..+++-.|.|-...+ ....|+..+++.++++-.+.. ..+ ..-..+.+.+|.++
T Consensus 98 al~~~l~A~~~G~-~~vI~etgsGnhG~A----~A~aaa~~Gl~~~I~m~~~d~------~~q---~~nv~~mr~~GAeV 163 (402)
T PRK13028 98 CLGQALLAKRMGK-KRLIAETGAGQHGVA----TATAAALFGLECEIYMGEVDI------ERQ---HPNVFRMKLLGAEV 163 (402)
T ss_pred HHHHHHHHHHcCC-CeEEEecCcHHHHHH----HHHHHHHcCCCEEEEECCCcc------hhh---HHHHHHHHHcCCEE
Confidence 4555554444443 345555666553221 134556788988877643210 000 11124678889999
Q ss_pred EEEcC
Q 023827 232 IRVDG 236 (276)
Q Consensus 232 ~~vdg 236 (276)
+.|+.
T Consensus 164 i~v~~ 168 (402)
T PRK13028 164 VPVTR 168 (402)
T ss_pred EEEcC
Confidence 88873
No 307
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=25.30 E-value=63 Score=22.86 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=11.4
Q ss_pred HHHHhHccCCCEEEEEE
Q 023827 249 AREMAIGEGRPILIEVK 265 (276)
Q Consensus 249 a~~~~r~~~~P~lIe~~ 265 (276)
|++.|++.++|.+|.+.
T Consensus 9 al~~A~~~~kpvlv~f~ 25 (82)
T PF13899_consen 9 ALAEAKKEGKPVLVDFG 25 (82)
T ss_dssp HHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHcCCCEEEEEE
Confidence 44444446899999983
No 308
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=25.14 E-value=2.5e+02 Score=26.48 Aligned_cols=48 Identities=10% Similarity=0.160 Sum_probs=31.3
Q ss_pred CcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 023827 217 SDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVKC 266 (276)
Q Consensus 217 ~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 266 (276)
..|++++++-.--..++| ..+..+..++++|....|+++ ||+||++-.
T Consensus 116 avdi~~ia~pv~kwavtv--~epalvp~v~qkafhlmrs~rpgpvlidlp~ 164 (592)
T COG3960 116 AVDIEAIAKPVSKWAVTV--REPALVPRVLQQAFHLMRSGRPGPVLIDLPF 164 (592)
T ss_pred hhhHHHhhhhhhhhhhhh--cchhhhHHHHHHHHHHHhcCCCCCeEEeccc
Confidence 455666665542222233 367788899999988777554 799988643
No 309
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=25.01 E-value=1.9e+02 Score=24.77 Aligned_cols=67 Identities=21% Similarity=0.292 Sum_probs=45.8
Q ss_pred CCceEEEEECCCcC--CcchHHHHHHHHHHCCC-CEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEc
Q 023827 164 KDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (276)
Q Consensus 164 ~~~~vv~~~GDG~~--~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vd 235 (276)
|..+......+|++ ..|...-++.++..-++ |+-++|+ +-..........++.++|+.+|++.+.++
T Consensus 119 PGHv~Pl~a~~gGvl~R~GhtEaavdLa~lAGl~p~avi~e-----il~~dG~~~~~~~~~~fA~~~~l~~vsi~ 188 (194)
T PF00926_consen 119 PGHVFPLRARPGGVLERRGHTEAAVDLARLAGLSPVAVICE-----ILDDDGDMARRDELEEFAKKHGLPIVSIE 188 (194)
T ss_dssp EEEEEEEEE-TTGGGTSSSHHHHHHHHHHHTTS-SBEEEEE-----BBETTSSBHCHHHHHHHHHHTT-EEEEHH
T ss_pred CCCCccceecCCcccCCCChHHHHHHHHHHhCCCCcEEEEE-----EeCCCCCcCCHHHHHHHHHHcCCcEEEHH
Confidence 45666677778887 45887778999999999 8877765 11111123345678889999999998764
No 310
>COG1424 BioW Pimeloyl-CoA synthetase [Coenzyme metabolism]
Probab=24.89 E-value=2.3e+02 Score=24.52 Aligned_cols=76 Identities=25% Similarity=0.284 Sum_probs=44.3
Q ss_pred HHHHHHHHHHCCC-CEEE--EEEeCCcc-cccccc----CccCCcchhhhHhhcCceEEEEcCC-CHHHHHHHHHHHHHH
Q 023827 182 FHAALNFSAVTEA-PVIF--ICRNNGWA-ISTPIS----DQFRSDGAVVKGRAYGVRSIRVDGN-DALAIYSAVHAAREM 252 (276)
Q Consensus 182 ~~Eal~~A~~~~L-pvi~--vv~nN~~~-~~~~~~----~~~~~~~~~~~a~a~G~~~~~vdg~-d~~~v~~a~~~a~~~ 252 (276)
.-+||..|+.-++ |-++ +|..+.-. .++... .-....++.....-+|.+++-||+. |+...... ++
T Consensus 154 ~~dAlAiaskv~~hp~VvaELC~SDd~dY~TGYvagkkiGY~Rit~lKe~gt~~GgRVfFVd~~~dln~yI~~----Le- 228 (239)
T COG1424 154 TVDALAIASKVNAHPGVVAELCWSDDPDYTTGYVAGKKIGYHRITDLKEVGTRYGGRVFFVDDCIDLNHYISF----LE- 228 (239)
T ss_pred HHHHHHHHHhhccCcceeEEEeecCCCcceeeeeecceeeeEEeecccccCCccCcEEEEEcCcccHHHHHHH----Hh-
Confidence 4578888888777 5322 34332211 111111 1122346677788899999999975 55443322 22
Q ss_pred hHccCCCEEEEEEE
Q 023827 253 AIGEGRPILIEVKC 266 (276)
Q Consensus 253 ~r~~~~P~lIe~~t 266 (276)
++|.+|+..|
T Consensus 229 ----~kp~lIe~e~ 238 (239)
T COG1424 229 ----SKPKLIEYET 238 (239)
T ss_pred ----cCCEEEEEec
Confidence 5899999765
No 311
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=24.78 E-value=3.7e+02 Score=23.93 Aligned_cols=41 Identities=17% Similarity=0.085 Sum_probs=27.3
Q ss_pred HHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCC
Q 023827 186 LNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGND 238 (276)
Q Consensus 186 l~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d 238 (276)
...|.++++|.++++..+- ...-.+..+.||.+++.+++..
T Consensus 69 A~~a~~~G~~~~i~vp~~~------------~~~k~~~~~~~Ga~v~~~~~~~ 109 (291)
T cd01561 69 AMVAAAKGYRFIIVMPETM------------SEEKRKLLRALGAEVILTPEAE 109 (291)
T ss_pred HHHHHHcCCeEEEEECCCC------------CHHHHHHHHHcCCEEEEeCCCC
Confidence 3355678999888885431 1123356778999999998753
No 312
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=24.71 E-value=1.8e+02 Score=22.10 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=40.2
Q ss_pred CCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEc
Q 023827 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (276)
Q Consensus 163 ~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vd 235 (276)
+++..++++.-.|...+ ..+++..|...+.|+|.|..|+ ++++.+...|.+.+.|.
T Consensus 42 ~~~dl~I~iS~SG~t~e--~i~~~~~a~~~g~~iI~IT~~~---------------~l~~~~~~~~~~~~~~p 97 (119)
T cd05017 42 DRKTLVIAVSYSGNTEE--TLSAVEQAKERGAKIVAITSGG---------------KLLEMAREHGVPVIIIP 97 (119)
T ss_pred CCCCEEEEEECCCCCHH--HHHHHHHHHHCCCEEEEEeCCc---------------hHHHHHHHcCCcEEECC
Confidence 34678888888888764 6788999999999998887432 15556665676666654
No 313
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=24.65 E-value=1.3e+02 Score=25.02 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=30.2
Q ss_pred CceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEe
Q 023827 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN 202 (276)
Q Consensus 165 ~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~n 202 (276)
.++.+.++|-|....+...+...++...++|++.-...
T Consensus 27 AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~ 64 (162)
T TIGR00315 27 AKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADT 64 (162)
T ss_pred CCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCcc
Confidence 46788889999987667778888899999998765543
No 314
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=24.64 E-value=1.3e+02 Score=27.45 Aligned_cols=67 Identities=18% Similarity=0.156 Sum_probs=35.6
Q ss_pred ccccccccchhhhHHHHhhh--cC-CCceEEEEECCCcC--CcchHHH--------HHHHHHHCCCCEEEEEEeCCcccc
Q 023827 142 SSTIATQLPHAVGAAYALKM--DR-KDACAVTYFGDGGT--SEGDFHA--------ALNFSAVTEAPVIFICRNNGWAIS 208 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~--~~-~~~~vv~~~GDG~~--~~G~~~E--------al~~A~~~~Lpvi~vv~nN~~~~~ 208 (276)
+..+|..++.+.|-.++.-. .. .+-++|.++==|++ ++|.+.- ++...+..++|.|.|+.+..++..
T Consensus 130 ~~f~gGS~g~~~~eKi~r~~e~A~~~~lPlV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~ 209 (292)
T PRK05654 130 FSFMGGSMGSVVGEKIVRAVERAIEEKCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGV 209 (292)
T ss_pred cccccCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHH
Confidence 45566666667776665432 22 23344444433343 5554321 000111235799999998888754
No 315
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=24.35 E-value=2.1e+02 Score=21.63 Aligned_cols=39 Identities=23% Similarity=0.263 Sum_probs=31.3
Q ss_pred CCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC
Q 023827 164 KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (276)
Q Consensus 164 ~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~ 204 (276)
++..++++.-.|...+ ..+++..|...+.|+|.|..|..
T Consensus 46 ~~d~~I~iS~sG~t~e--~~~~~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 46 EDTLVIAISQSGETAD--TLAALRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred CCcEEEEEeCCcCCHH--HHHHHHHHHHcCCeEEEEECCCC
Confidence 4667888888888764 67889999999999999987643
No 316
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=24.34 E-value=3.2e+02 Score=26.34 Aligned_cols=93 Identities=16% Similarity=0.180 Sum_probs=55.2
Q ss_pred EEEEECCCc--CCcchHHHHHHHHHHCCCCEEEEEEeCCc----cc-cccccC---ccC---------CcchhhhHhhcC
Q 023827 168 AVTYFGDGG--TSEGDFHAALNFSAVTEAPVIFICRNNGW----AI-STPISD---QFR---------SDGAVVKGRAYG 228 (276)
Q Consensus 168 vv~~~GDG~--~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~----~~-~~~~~~---~~~---------~~~~~~~a~a~G 228 (276)
+++|.+|+. .....+.+++..+...+.++++-++|+.. .+ .+.... ... ......+++..|
T Consensus 144 ~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~~~~~~~~g~~~~~~~~~~~p~~aE~~~iar~~~la~~~g 223 (430)
T COG0044 144 FKGFMDDSTGALDDDVLEEALEYAAELGALILVHAEDDDLIAEGVMNEGLRAPELGLAGRPPIAEASAIARDLELARATG 223 (430)
T ss_pred eEEEecCCcCcCCHHHHHHHHHHHHhcCCeEEEecCChhHhhhHHHhcCccchhhccCCCChHHHHHHHHHHHHHHHHhC
Confidence 477888875 56677889999999999999999999952 11 111110 000 122345677788
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEE
Q 023827 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVK 265 (276)
Q Consensus 229 ~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~ 265 (276)
.++..+--...+++ +.++.|. ..+.|+-.|+.
T Consensus 224 ~~vhi~HiSt~~sv-~li~~ak----~~g~~vt~Evt 255 (430)
T COG0044 224 ARVHICHISTKESV-ELIRAAK----AEGIRVTAEVT 255 (430)
T ss_pred CcEEEEEcCCHHHH-HHHHHHh----hcCCceEEeec
Confidence 66665543333333 3344443 34567777664
No 317
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=24.15 E-value=2.8e+02 Score=23.84 Aligned_cols=66 Identities=18% Similarity=0.298 Sum_probs=46.0
Q ss_pred CCCceEEEEECCCcC--CcchHHHHHHHHHHCCC-CEEEEEE--eCCccccccccCccCCcchhhhHhhcCceEEEEc
Q 023827 163 RKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICR--NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (276)
Q Consensus 163 ~~~~~vv~~~GDG~~--~~G~~~Eal~~A~~~~L-pvi~vv~--nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vd 235 (276)
.|..+.....-+|++ ..|...-++.++..-++ |+-++|+ |. .......+++.++|+.+|++.+.++
T Consensus 123 ~PGHvfPL~a~~gGvl~R~GhTEaavdL~~lAGl~p~~vicEil~~-------dG~m~~~~~~~~fA~~~~l~~isi~ 193 (199)
T TIGR00506 123 RPGHVFPLRAADGGVLTRGGHTEASVDLAELAGLKPAGVICEMMND-------DGTMARKPELMEYAKKHNLKLISIE 193 (199)
T ss_pred CCCccceEEeccCCCcCCCChHHHHHHHHHHcCCCceEEEEEEeCC-------CCCccCHHHHHHHHHHcCCcEEEHH
Confidence 456666666667777 46777778888888888 8777665 22 1122345678889999999997653
No 318
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=23.58 E-value=3.8e+02 Score=25.60 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=39.7
Q ss_pred hhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceE
Q 023827 152 AVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRS 231 (276)
Q Consensus 152 A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~ 231 (276)
++|.++..+..+. ..+++-.|.|-...+ ....|+.++++.++++-.+. + ..+ .. -..+.+.+|.++
T Consensus 94 al~~~l~A~~~Gk-~~vIaetgaGnhG~A----~A~~aa~~Gl~c~I~mp~~d--~----~rq--~~-nv~~m~~lGA~V 159 (397)
T PRK04346 94 VLGQALLAKRMGK-KRIIAETGAGQHGVA----TATAAALLGLECVIYMGAED--V----ERQ--AL-NVFRMKLLGAEV 159 (397)
T ss_pred HHHHHHHHHHcCC-CeEEEecCcHHHHHH----HHHHHHHcCCcEEEEecCCc--h----hhh--hh-HHHHHHHCCCEE
Confidence 5555555454443 345565666553322 13456778999887774321 0 010 01 124578899999
Q ss_pred EEEcC
Q 023827 232 IRVDG 236 (276)
Q Consensus 232 ~~vdg 236 (276)
+.|+.
T Consensus 160 v~v~~ 164 (397)
T PRK04346 160 VPVTS 164 (397)
T ss_pred EEECC
Confidence 99874
No 319
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=23.33 E-value=2.6e+02 Score=21.51 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=27.3
Q ss_pred CCceEEEEECCCcCCcc-hHHHHHHHHHHCCCCEEEEEE
Q 023827 164 KDACAVTYFGDGGTSEG-DFHAALNFSAVTEAPVIFICR 201 (276)
Q Consensus 164 ~~~~vv~~~GDG~~~~G-~~~Eal~~A~~~~Lpvi~vv~ 201 (276)
..+++++++.||.-..+ ...+.+......+++++.|-.
T Consensus 102 ~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~v~v~~i~~ 140 (161)
T cd01450 102 NVPKVIIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVVGV 140 (161)
T ss_pred CCCeEEEEECCCCCCCCcchHHHHHHHHHCCCEEEEEec
Confidence 35679999999988654 366667777777777766654
No 320
>PRK00124 hypothetical protein; Validated
Probab=23.26 E-value=1.7e+02 Score=24.14 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=27.9
Q ss_pred EEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCcc
Q 023827 169 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA 206 (276)
Q Consensus 169 v~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~ 206 (276)
+.+-+|++- .-.|....|.++++|+++|..-|.+-
T Consensus 3 I~VDADACP---Vk~~i~r~a~r~~i~v~~Vas~n~~~ 37 (151)
T PRK00124 3 IYVDADACP---VKDIIIRVAERHGIPVTLVASFNHFL 37 (151)
T ss_pred EEEECCCCc---HHHHHHHHHHHHCCeEEEEEeCCccc
Confidence 567788886 45577889999999999999877753
No 321
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=23.02 E-value=6.8e+02 Score=24.02 Aligned_cols=41 Identities=10% Similarity=-0.032 Sum_probs=26.2
Q ss_pred HHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCC
Q 023827 188 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (276)
Q Consensus 188 ~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~ 237 (276)
.|+.++++.++++-...+... +.-....+.||..++.+++.
T Consensus 136 aaa~~Gl~~~V~mp~~s~~~k---------~~k~~~m~~~GA~Vi~~~~~ 176 (419)
T TIGR01415 136 AGALFGLECKVFMVRVSFNQK---------PYRKYLMELYGAEVIPSPSE 176 (419)
T ss_pred HHHHcCCcEEEEEeCCCcccC---------HHHHHHHHHcCCEEEEECCc
Confidence 456689988777754322111 11125678999999999875
No 322
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=22.83 E-value=1.8e+02 Score=23.39 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=32.5
Q ss_pred CCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC
Q 023827 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (276)
Q Consensus 163 ~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~ 204 (276)
+++..++++..-|... ...+++..|...+.|+|.|..|..
T Consensus 78 ~~~D~~i~iS~sG~t~--~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 78 QKGDVLLGISTSGNSK--NVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCCEEEEEcCCCCCH--HHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4567888888888776 477899999999999999987543
No 323
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=22.83 E-value=1.5e+02 Score=27.20 Aligned_cols=19 Identities=21% Similarity=0.763 Sum_probs=8.8
Q ss_pred HHHHHHCCCCEEEEEEeCC
Q 023827 186 LNFSAVTEAPVIFICRNNG 204 (276)
Q Consensus 186 l~~A~~~~Lpvi~vv~nN~ 204 (276)
+..|...++|+|++++-.+
T Consensus 161 ~e~A~~~rlPlV~l~~SGG 179 (296)
T CHL00174 161 IEYATNESLPLIIVCASGG 179 (296)
T ss_pred HHHHHHcCCCEEEEECCCC
Confidence 3444444555554444433
No 324
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=22.65 E-value=6.3e+02 Score=23.48 Aligned_cols=98 Identities=20% Similarity=0.192 Sum_probs=50.6
Q ss_pred cchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHH--------CCCCEEEEEEeCCccccccccCccCCcch
Q 023827 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAV--------TEAPVIFICRNNGWAISTPISDQFRSDGA 220 (276)
Q Consensus 149 l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~--------~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~ 220 (276)
.+.|+|+|+.- -.-++=..+.| |..-.+.+-+|-|++ ++.|+++=.-+.+ ++.... + ...++
T Consensus 62 ~G~avGaA~~G----lrPivEiqf~d--F~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~-g~~~~~--~-HSqs~ 131 (324)
T COG0022 62 AGIAVGAALTG----LRPIVEIQFAD--FIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGG-GIGGGA--Q-HSQSL 131 (324)
T ss_pred HHHHHHHHHcC----CcceEEEEecc--hhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCC-CCCchh--h-ccCCH
Confidence 45678887752 22223233333 322234555666665 3457776654433 222211 1 12345
Q ss_pred hhhHh-hcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEE
Q 023827 221 VVKGR-AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILI 262 (276)
Q Consensus 221 ~~~a~-a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lI 262 (276)
..++. --||+++.-. ++.+-.--++.|++ .+-|++.
T Consensus 132 ea~f~h~PGlKVV~PS--tpyDAKGLL~aAIr----d~dPVif 168 (324)
T COG0022 132 EALFAHIPGLKVVMPS--TPYDAKGLLKAAIR----DPDPVIF 168 (324)
T ss_pred HHHHhcCCCceEEecC--ChHHHHHHHHHHhc----CCCCEEE
Confidence 55443 3588877543 56666677777775 4568753
No 325
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=22.11 E-value=47 Score=24.90 Aligned_cols=69 Identities=17% Similarity=0.125 Sum_probs=44.2
Q ss_pred HhhhcC--CCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEc
Q 023827 158 ALKMDR--KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (276)
Q Consensus 158 a~k~~~--~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vd 235 (276)
|.+|+. .+.+.++-.|+|...+-- +..|..+++|+. + .+.+.+...- +.++
T Consensus 12 Al~Yd~~~~~AP~vvA~G~G~iAe~I----I~~Ake~~Vpi~---e---------------dp~Lv~~L~~-----lelg 64 (92)
T COG2257 12 ALAYDEGKDKAPKVVASGKGEIAEKI----IEKAKEHGVPIQ---E---------------DPLLVELLLK-----LELG 64 (92)
T ss_pred eeeeccCCCCCCEEEeecchHHHHHH----HHHHHHcCCCcc---c---------------CHHHHHHHHh-----cccc
Confidence 344443 567888899999987643 789999999963 1 1233333322 2334
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 023827 236 GNDALAIYSAVHAAREMA 253 (276)
Q Consensus 236 g~d~~~v~~a~~~a~~~~ 253 (276)
..=|+++|+++.+-+.+.
T Consensus 65 ~~IPeelY~vVAEifafi 82 (92)
T COG2257 65 DEIPEELYEVVAEIFAFI 82 (92)
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 445789999988876543
No 326
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=21.99 E-value=2.2e+02 Score=24.05 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=33.3
Q ss_pred CCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC
Q 023827 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (276)
Q Consensus 163 ~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~ 204 (276)
.++..++++...|... ...+++..|...+.|+|.|..++.
T Consensus 110 ~~~Dv~I~iS~SG~t~--~~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 110 REGDVLLGISTSGNSG--NIIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred CCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5577889999888776 477899999999999999987653
No 327
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=21.73 E-value=4.1e+02 Score=25.25 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=25.6
Q ss_pred EEEEECCCcCC----cch-HHHHHHHHHHCCCCEEEEEE
Q 023827 168 AVTYFGDGGTS----EGD-FHAALNFSAVTEAPVIFICR 201 (276)
Q Consensus 168 vv~~~GDG~~~----~G~-~~Eal~~A~~~~Lpvi~vv~ 201 (276)
=++++|.|.+. +|- ..+-...|.+++.|++.|+-
T Consensus 285 DlVITGEG~~D~Qtl~GK~p~~Va~~A~~~~vPviai~G 323 (375)
T TIGR00045 285 DLVITGEGRLDRQSLMGKAPVGVAKRAKKYGVPVIAIAG 323 (375)
T ss_pred CEEEECCCcccccccCCchHHHHHHHHHHhCCeEEEEec
Confidence 48999999982 232 34556778889999999985
No 328
>TIGR01204 bioW 6-carboxyhexanoate--CoA ligase. Alternate name: pimeloyl-CoA synthase.
Probab=21.62 E-value=2.7e+02 Score=24.63 Aligned_cols=74 Identities=22% Similarity=0.227 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHCC-CC-E---EEEEEeCCcccc---ccccCccCCcchhhhHhhcCceEEEEcC-CCHHHHHHHHHHHHH
Q 023827 181 DFHAALNFSAVTE-AP-V---IFICRNNGWAIS---TPISDQFRSDGAVVKGRAYGVRSIRVDG-NDALAIYSAVHAARE 251 (276)
Q Consensus 181 ~~~Eal~~A~~~~-Lp-v---i~vv~nN~~~~~---~~~~~~~~~~~~~~~a~a~G~~~~~vdg-~d~~~v~~a~~~a~~ 251 (276)
.+.|||.+|+.-- .| + +.+-+|-.|-.. +..-.-...+++.......|.+++-|++ .|+.++..-|+
T Consensus 150 r~~eAlaLAsKV~~~pgvvAElC~SDDP~YtTGYVA~~~~gY~RI~~lK~~G~~~GGRvffv~~~~~l~~~i~yLE---- 225 (232)
T TIGR01204 150 RTVEALALAFKVLFCPAVVAELCWSDDPDYVTGYVSGKEIGYVRITPLKEKGDELGGRVFFVSRKNELSEYIHCLE---- 225 (232)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCCCCeeEEEEeCCCCeEeCccccccCCCCCCEEEEEeCCCCHHHHHHHHh----
Confidence 5889999998744 56 3 233344445321 1110112334566666678999999998 46555443332
Q ss_pred HhHccCCCEEEE
Q 023827 252 MAIGEGRPILIE 263 (276)
Q Consensus 252 ~~r~~~~P~lIe 263 (276)
++|+||+
T Consensus 226 -----~~pvLI~ 232 (232)
T TIGR01204 226 -----QKPILIE 232 (232)
T ss_pred -----cCcEEeC
Confidence 4799884
No 329
>PRK13936 phosphoheptose isomerase; Provisional
Probab=21.58 E-value=2.1e+02 Score=24.16 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=33.3
Q ss_pred CCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC
Q 023827 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (276)
Q Consensus 163 ~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~ 204 (276)
.++..++++...|... ...+++..|...+.|+|.|..+++
T Consensus 110 ~~~Dv~i~iS~sG~t~--~~~~~~~~ak~~g~~iI~IT~~~~ 149 (197)
T PRK13936 110 QPGDVLLAISTSGNSA--NVIQAIQAAHEREMHVVALTGRDG 149 (197)
T ss_pred CCCCEEEEEeCCCCcH--HHHHHHHHHHHCCCeEEEEECCCC
Confidence 5678899999888876 477889999999999999987653
No 330
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=21.55 E-value=3.4e+02 Score=20.38 Aligned_cols=38 Identities=16% Similarity=0.087 Sum_probs=26.7
Q ss_pred CCceEEEEECCCcCCcc--hHHHHHHHHHHCCCCEEEEEE
Q 023827 164 KDACAVTYFGDGGTSEG--DFHAALNFSAVTEAPVIFICR 201 (276)
Q Consensus 164 ~~~~vv~~~GDG~~~~G--~~~Eal~~A~~~~Lpvi~vv~ 201 (276)
...+.+++++||....+ ...+.+..+...++.+.+|-.
T Consensus 100 ~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~v~~v~~ 139 (161)
T cd00198 100 NARRVIILLTDGEPNDGPELLAEAARELRKLGITVYTIGI 139 (161)
T ss_pred CCceEEEEEeCCCCCCCcchhHHHHHHHHHcCCEEEEEEc
Confidence 35788999999998655 466667777777776655543
No 331
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=21.33 E-value=2e+02 Score=24.53 Aligned_cols=40 Identities=10% Similarity=0.222 Sum_probs=33.0
Q ss_pred CCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC
Q 023827 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (276)
Q Consensus 163 ~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~ 204 (276)
.++..++++.+.|... .+.+++..|...+.|+|.|..+.+
T Consensus 108 ~~gDvli~iS~SG~s~--~v~~a~~~Ak~~G~~vI~IT~~~~ 147 (196)
T PRK10886 108 HAGDVLLAISTRGNSR--DIVKAVEAAVTRDMTIVALTGYDG 147 (196)
T ss_pred CCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4577899999998886 477899999999999999886543
No 332
>PRK13938 phosphoheptose isomerase; Provisional
Probab=20.95 E-value=2.6e+02 Score=23.78 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=34.1
Q ss_pred hcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC
Q 023827 161 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (276)
Q Consensus 161 ~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~ 204 (276)
...++..++++..-|... .+.+++..|...+.|+|.+..|.+
T Consensus 110 ~~~~~DllI~iS~SG~t~--~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 110 SARPGDTLFAISTSGNSM--SVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred cCCCCCEEEEEcCCCCCH--HHHHHHHHHHHCCCEEEEEeCCCC
Confidence 345677888888888776 477899999999999999987654
No 333
>PRK08329 threonine synthase; Validated
Probab=20.85 E-value=4.1e+02 Score=24.55 Aligned_cols=40 Identities=18% Similarity=0.122 Sum_probs=26.8
Q ss_pred HHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCC
Q 023827 186 LNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (276)
Q Consensus 186 l~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~ 237 (276)
...|++.+++.++++-.+. ...-....+.||.+++.|++.
T Consensus 120 A~~aa~~G~~~~v~vp~~~------------~~~k~~~~~~~GA~v~~v~~~ 159 (347)
T PRK08329 120 ALYSLSEGIKVHVFVSYNA------------SKEKISLLSRLGAELHFVEGD 159 (347)
T ss_pred HHHHHHcCCcEEEEECCCC------------hHHHHHHHHHcCCEEEEECCC
Confidence 3456678999888875331 111234568899999999985
No 334
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=20.84 E-value=5.3e+02 Score=26.66 Aligned_cols=72 Identities=18% Similarity=0.132 Sum_probs=41.2
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
.|++.++..+..+.+ .+++-.|-|-...+ ....|+..+++.++++-.+... ....-..+.+.||..
T Consensus 366 ~Al~~i~~A~~~G~~-~~IvetssGNhG~A----lA~aaA~~Gl~c~Ivmp~~~~~---------~~~~nv~~mr~lGAe 431 (695)
T PRK13802 366 NALGQALLVKRMGKT-RVIAETGAGQHGVA----TATVCAMLGLKCRIYMGQIDAR---------RQALNVARMRMLGAE 431 (695)
T ss_pred HHHHHHHHHHHcCCC-CEEEEECcHHHHHH----HHHHHHHcCCCEEEEEeCCccc---------ccHHHHHHHHHcCCE
Confidence 355555555544544 45555665553222 1345677899988887543210 011123467889999
Q ss_pred EEEEcC
Q 023827 231 SIRVDG 236 (276)
Q Consensus 231 ~~~vdg 236 (276)
++.|++
T Consensus 432 Vi~v~~ 437 (695)
T PRK13802 432 VVEVTL 437 (695)
T ss_pred EEEECC
Confidence 999884
No 335
>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A ....
Probab=20.68 E-value=1.9e+02 Score=24.50 Aligned_cols=58 Identities=14% Similarity=0.125 Sum_probs=39.4
Q ss_pred EEEEEeCCccccccccCc-cCCcchhhhHhhcCceEEE--EcCCCHHHHHHHHHHHHHHhH
Q 023827 197 IFICRNNGWAISTPISDQ-FRSDGAVVKGRAYGVRSIR--VDGNDALAIYSAVHAAREMAI 254 (276)
Q Consensus 197 i~vv~nN~~~~~~~~~~~-~~~~~~~~~a~a~G~~~~~--vdg~d~~~v~~a~~~a~~~~r 254 (276)
-+||.||.|+-..+.... .....+++..+.+|++... .+-.+..++.+++++......
T Consensus 3 AliIg~~~y~~~~~L~~~~~D~~~~~~~L~~~gf~~~~~l~~~~t~~~i~~~l~~l~~~~~ 63 (248)
T PF00656_consen 3 ALIIGVNYYQNPPPLPGAVNDAEAMAEALEKLGFDVENILIDNATRANILKALRELLQRAQ 63 (248)
T ss_dssp EEEEEESSTSSTCHCTTHHHHHHHHHHHHHHTTEEEEEEEEESSSHHHHHHHHHHHHTSGG
T ss_pred EEEEEeeCCCCCCCCCCHHHHHHHHHHHHHHcCCceeeccccchHHHHHHHHHhhhhccCC
Confidence 467888888765222111 1234566777888999998 777788899999888776543
No 336
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=20.64 E-value=4.5e+02 Score=23.98 Aligned_cols=85 Identities=14% Similarity=0.146 Sum_probs=45.4
Q ss_pred EEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHH
Q 023827 169 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 248 (276)
Q Consensus 169 v~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~ 248 (276)
++|+|..+|... +.++| ...+..++.|+.+..-..+ . .......++.+.|...|++++..+-.+..++.+.++
T Consensus 3 Ivf~Gs~~~a~~-~L~~L---~~~~~~i~~Vvt~pd~~~~-r-~~~~~~~~v~~~A~~~~Ipv~~~~~~~~~~~~~~l~- 75 (313)
T TIGR00460 3 IVFFGTPTFSLP-VLEEL---REDNFEVVGVVTQPDKPAG-R-GKKLTPPPVKVLAEEKGIPVFQPEKQRQLEELPLVR- 75 (313)
T ss_pred EEEECCCHHHHH-HHHHH---HhCCCcEEEEEcCCCCccC-C-CCCCCCChHHHHHHHcCCCEEecCCCCcHHHHHHHH-
Confidence 678888887643 23333 3344667777643211000 0 011234568889999999998876544333322221
Q ss_pred HHHHhHccCCCEEEEEEEe
Q 023827 249 AREMAIGEGRPILIEVKCL 267 (276)
Q Consensus 249 a~~~~r~~~~P~lIe~~t~ 267 (276)
+ ..|-++.+..|
T Consensus 76 ------~-~~~Dliv~~~~ 87 (313)
T TIGR00460 76 ------E-LKPDVIVVVSF 87 (313)
T ss_pred ------h-hCCCEEEEccc
Confidence 1 25666665554
No 337
>PF05209 MinC_N: Septum formation inhibitor MinC, N-terminal domain; InterPro: IPR007874 In Escherichia coli FtsZ (P0A9A6 from SWISSPROT) assembles into a Z ring at midcell. Its assembly at polar sites is prevented by the min system. MinC P18196 from SWISSPROT, a component of this system, is an inhibitor of FtsZ assembly that is positioned within the cell by interaction with the MinDE proteins. MinC is an oligomer, probably a dimer []. The C-terminal half of MinC is the most conserved and interacts with MinD. The N-terminal half is thought to interact with FtsZ. MinC rapidly oscillates between the poles of the cell to destabilise FtsZ filaments that have formed before they mature into polar Z rings; GO: 0051302 regulation of cell division; PDB: 3GHF_A 1HF2_C.
Probab=20.54 E-value=2e+02 Score=21.38 Aligned_cols=44 Identities=16% Similarity=0.329 Sum_probs=32.1
Q ss_pred hHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHc--cCCCEEEEEEE
Q 023827 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIG--EGRPILIEVKC 266 (276)
Q Consensus 223 ~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~--~~~P~lIe~~t 266 (276)
+...+++.++.+...|+.++.+++.+-++.+-. .+.|.+|++.-
T Consensus 9 Kg~~~~l~vl~l~~~d~~~l~~~L~~ki~~ap~FF~~~pvvldl~~ 54 (99)
T PF05209_consen 9 KGSNFTLLVLRLRSADLDELLQALDEKIAQAPDFFKNAPVVLDLSN 54 (99)
T ss_dssp EEETTEEEEEEECSS-HHHHHHHHHHHHHHTHHHCTTTEEEEEEEE
T ss_pred EcCceeEEEEEeCCCCHHHHHHHHHHHHHhChHhHcCCCeEEehhh
Confidence 345678889999999999999998876665443 24699998754
No 338
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=20.53 E-value=1.7e+02 Score=21.34 Aligned_cols=39 Identities=10% Similarity=0.180 Sum_probs=25.4
Q ss_pred EEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccc
Q 023827 169 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI 207 (276)
Q Consensus 169 v~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~ 207 (276)
++++-=-..+...+..+++++.+.++|++-||+|=.|..
T Consensus 29 ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs~~~ 67 (81)
T PF10609_consen 29 IVVTTPQELALADVRRAIDMFRKLNVPILGVVENMSYFV 67 (81)
T ss_dssp EEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-EEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccC
Confidence 333333344455788899999999999999999976543
No 339
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=20.19 E-value=2.7e+02 Score=24.79 Aligned_cols=31 Identities=23% Similarity=0.220 Sum_probs=19.5
Q ss_pred CceEEEEECCCcCCcchHHHHHHHHHH-CCCCEEEEE
Q 023827 165 DACAVTYFGDGGTSEGDFHAALNFSAV-TEAPVIFIC 200 (276)
Q Consensus 165 ~~~vv~~~GDG~~~~G~~~Eal~~A~~-~~Lpvi~vv 200 (276)
...++++-|||.+++ +++.... .+.|.+-++
T Consensus 58 ~d~ivv~GGDGTl~~-----v~~~l~~~~~~~~lgii 89 (293)
T TIGR00147 58 VDTVIAGGGDGTINE-----VVNALIQLDDIPALGIL 89 (293)
T ss_pred CCEEEEECCCChHHH-----HHHHHhcCCCCCcEEEE
Confidence 357999999998863 3544433 345555544
No 340
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=20.05 E-value=2.2e+02 Score=25.25 Aligned_cols=40 Identities=23% Similarity=0.227 Sum_probs=33.5
Q ss_pred CCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC
Q 023827 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (276)
Q Consensus 163 ~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~ 204 (276)
.++..++.+...|... .+.+++..|...+.|+|.|..|..
T Consensus 117 ~~~DvvI~IS~SG~T~--~vi~al~~Ak~~Ga~~I~It~~~~ 156 (257)
T cd05007 117 TERDVVIGIAASGRTP--YVLGALRYARARGALTIGIACNPG 156 (257)
T ss_pred CCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCeEEEEECCCC
Confidence 4577889999989887 478999999999999999987654
Done!