Query 023827
Match_columns 276
No_of_seqs 235 out of 2394
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 13:27:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bfd_A 2-oxoisovalerate dehydr 100.0 4.2E-63 1.4E-67 465.8 30.3 274 1-274 20-293 (400)
2 1qs0_A 2-oxoisovalerate dehydr 100.0 6E-60 2E-64 444.6 27.7 263 11-274 50-313 (407)
3 1w85_A Pyruvate dehydrogenase 100.0 5.9E-58 2E-62 426.5 27.6 255 10-273 18-272 (368)
4 2ozl_A PDHE1-A type I, pyruvat 100.0 3.2E-56 1.1E-60 414.1 26.8 255 13-274 14-269 (365)
5 1umd_A E1-alpha, 2-OXO acid de 100.0 6.8E-56 2.3E-60 413.1 28.9 264 10-274 11-275 (367)
6 2yic_A 2-oxoglutarate decarbox 100.0 1.6E-47 5.4E-52 387.6 9.6 260 11-274 89-390 (868)
7 2jgd_A 2-oxoglutarate dehydrog 100.0 2.6E-46 8.8E-51 380.7 13.4 261 11-274 169-462 (933)
8 2xt6_A 2-oxoglutarate decarbox 100.0 2.1E-45 7.2E-50 380.1 15.7 260 11-274 334-635 (1113)
9 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 6.8E-34 2.3E-38 281.0 16.1 227 28-274 18-290 (621)
10 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 7.8E-32 2.7E-36 266.6 11.6 224 29-273 21-294 (629)
11 3rim_A Transketolase, TK; TPP, 100.0 2.6E-30 8.8E-35 257.0 20.3 216 47-274 29-275 (700)
12 3mos_A Transketolase, TK; thia 100.0 1.3E-29 4.3E-34 250.0 21.6 230 31-274 3-248 (616)
13 1r9j_A Transketolase; domains, 100.0 2.1E-29 7.3E-34 250.6 19.4 215 47-273 12-255 (673)
14 3l84_A Transketolase; TKT, str 100.0 1.8E-29 6.3E-34 248.9 18.6 215 46-274 11-248 (632)
15 1itz_A Transketolase; calvin c 100.0 4.5E-29 1.5E-33 248.4 20.1 228 31-274 9-267 (675)
16 3kom_A Transketolase; rossmann 100.0 5.4E-29 1.9E-33 246.8 18.2 178 87-274 59-255 (663)
17 1gpu_A Transketolase; transfer 100.0 1.1E-28 3.7E-33 245.9 19.5 177 87-273 60-255 (680)
18 2e6k_A Transketolase; structur 100.0 8.5E-29 2.9E-33 245.6 18.6 175 88-273 62-255 (651)
19 3uk1_A Transketolase; structur 100.0 9.1E-29 3.1E-33 246.4 17.4 177 87-274 98-293 (711)
20 3m49_A Transketolase; alpha-be 100.0 3.9E-28 1.3E-32 241.4 19.1 179 86-274 82-279 (690)
21 2r8o_A Transketolase 1, TK 1; 100.0 5.1E-28 1.8E-32 240.7 19.6 178 87-274 57-253 (669)
22 2qtc_A Pyruvate dehydrogenase 99.9 2.8E-26 9.7E-31 232.8 20.2 194 74-274 115-398 (886)
23 3ahc_A Phosphoketolase, xylulo 99.8 3.4E-20 1.1E-24 186.0 13.6 141 126-270 158-322 (845)
24 1v5e_A Pyruvate oxidase; oxido 99.7 2.2E-18 7.6E-23 169.2 10.4 121 141-270 411-541 (590)
25 4feg_A Pyruvate oxidase; carba 99.7 1.2E-18 4.2E-23 171.4 7.7 118 142-269 419-547 (603)
26 2pan_A Glyoxylate carboligase; 99.7 2.9E-18 1E-22 169.0 7.9 121 142-270 441-582 (616)
27 2vk8_A Pyruvate decarboxylase 99.7 2.8E-18 9.6E-23 167.4 4.5 124 141-271 411-545 (563)
28 1ozh_A ALS, acetolactate synth 99.7 4.6E-18 1.6E-22 166.1 6.0 118 141-270 418-545 (566)
29 1q6z_A BFD, BFDC, benzoylforma 99.7 4.7E-18 1.6E-22 164.6 6.0 115 143-269 401-526 (528)
30 2uz1_A Benzaldehyde lyase; thi 99.7 8.6E-18 2.9E-22 164.0 7.4 119 142-270 418-548 (563)
31 2pgn_A Cyclohexane-1,2-dione h 99.7 1E-17 3.4E-22 164.4 7.0 121 142-274 423-553 (589)
32 2iht_A Carboxyethylarginine sy 99.7 8.6E-18 2.9E-22 164.4 6.4 116 141-268 434-561 (573)
33 1t9b_A Acetolactate synthase, 99.7 2.9E-17 9.8E-22 163.7 9.1 118 142-271 512-640 (677)
34 1ybh_A Acetolactate synthase, 99.7 3.6E-17 1.2E-21 160.5 9.5 119 142-272 425-562 (590)
35 2vbf_A Branched-chain alpha-ke 99.7 2.4E-17 8.1E-22 161.1 7.7 121 141-272 423-555 (570)
36 2vbi_A Pyruvate decarboxylase; 99.7 2.2E-17 7.5E-22 161.2 7.3 120 141-271 407-536 (566)
37 3eya_A Pyruvate dehydrogenase 99.7 4E-17 1.4E-21 158.9 8.8 120 141-272 404-533 (549)
38 1ovm_A Indole-3-pyruvate decar 99.7 2.3E-17 7.8E-22 160.5 6.0 119 141-271 406-535 (552)
39 2c31_A Oxalyl-COA decarboxylas 99.7 1.6E-16 5.4E-21 155.2 11.2 119 141-272 424-551 (568)
40 2q28_A Oxalyl-COA decarboxylas 99.7 2.2E-16 7.4E-21 154.0 11.6 119 141-272 419-548 (564)
41 2nxw_A Phenyl-3-pyruvate decar 99.7 3.9E-17 1.3E-21 159.5 6.1 118 142-271 421-545 (565)
42 2wvg_A PDC, pyruvate decarboxy 99.7 1.1E-16 3.8E-21 156.3 8.1 121 141-272 411-545 (568)
43 2x7j_A 2-succinyl-5-enolpyruvy 99.6 1.6E-16 5.6E-21 156.2 2.9 115 142-269 454-581 (604)
44 3hww_A 2-succinyl-5-enolpyruvy 99.6 6.8E-16 2.3E-20 150.5 6.5 115 142-270 416-541 (556)
45 3lq1_A 2-succinyl-5-enolpyruvy 99.6 1.8E-15 6.3E-20 148.0 5.5 113 145-271 438-563 (578)
46 2c42_A Pyruvate-ferredoxin oxi 99.1 2.9E-10 9.9E-15 119.5 10.5 99 165-269 953-1071(1231)
47 2pgn_A Cyclohexane-1,2-dione h 93.4 0.54 1.8E-05 45.5 11.2 106 151-266 58-164 (589)
48 1ybh_A Acetolactate synthase, 93.2 0.28 9.5E-06 47.5 8.9 105 151-265 65-170 (590)
49 2uz1_A Benzaldehyde lyase; thi 93.2 0.33 1.1E-05 46.6 9.3 107 151-267 56-164 (563)
50 2iht_A Carboxyethylarginine sy 93.2 0.28 9.7E-06 47.2 8.9 107 151-266 63-170 (573)
51 1ozh_A ALS, acetolactate synth 92.9 0.28 9.7E-06 47.2 8.4 107 151-267 63-170 (566)
52 2wvg_A PDC, pyruvate decarboxy 92.4 0.54 1.8E-05 45.2 9.7 108 151-267 56-169 (568)
53 2vbi_A Pyruvate decarboxylase; 92.3 0.46 1.6E-05 45.6 9.0 107 151-266 56-168 (566)
54 3eya_A Pyruvate dehydrogenase 92.2 0.44 1.5E-05 45.6 8.7 105 151-265 56-160 (549)
55 2q28_A Oxalyl-COA decarboxylas 91.6 0.4 1.4E-05 46.0 7.7 108 151-266 60-168 (564)
56 2nxw_A Phenyl-3-pyruvate decar 91.6 0.42 1.4E-05 46.0 7.7 108 151-266 74-185 (565)
57 1t9b_A Acetolactate synthase, 91.5 0.57 2E-05 46.2 8.7 105 151-265 135-240 (677)
58 2o1s_A 1-deoxy-D-xylulose-5-ph 91.4 0.5 1.7E-05 46.1 8.2 103 148-264 373-476 (621)
59 4feg_A Pyruvate oxidase; carba 91.3 0.45 1.5E-05 46.2 7.7 105 151-265 65-169 (603)
60 2c31_A Oxalyl-COA decarboxylas 91.1 0.43 1.5E-05 45.9 7.3 108 151-266 62-170 (568)
61 2r8o_A Transketolase 1, TK 1; 91.0 1.2 4.2E-05 43.8 10.6 101 149-263 415-517 (669)
62 1v5e_A Pyruvate oxidase; oxido 90.7 0.58 2E-05 45.3 7.8 104 151-265 58-162 (590)
63 3mos_A Transketolase, TK; thia 90.7 1.2 4.1E-05 43.5 10.1 99 150-263 369-469 (616)
64 2e6k_A Transketolase; structur 90.5 1.1 3.7E-05 44.1 9.6 102 149-264 410-513 (651)
65 2pan_A Glyoxylate carboligase; 90.4 1.2 4E-05 43.3 9.7 107 151-266 80-187 (616)
66 1yd7_A 2-keto acid:ferredoxin 90.4 0.32 1.1E-05 44.8 5.4 108 148-266 76-187 (395)
67 3kom_A Transketolase; rossmann 89.5 2.5 8.5E-05 41.6 11.3 102 148-263 415-518 (663)
68 1itz_A Transketolase; calvin c 89.4 1.9 6.6E-05 42.5 10.4 101 150-264 428-531 (675)
69 2o1x_A 1-deoxy-D-xylulose-5-ph 89.1 0.6 2E-05 45.7 6.5 101 149-264 377-478 (629)
70 2x7j_A 2-succinyl-5-enolpyruvy 88.3 0.85 2.9E-05 44.2 6.9 109 151-267 84-198 (604)
71 1gpu_A Transketolase; transfer 88.3 1.9 6.5E-05 42.6 9.5 101 149-263 422-525 (680)
72 1q6z_A BFD, BFDC, benzoylforma 88.2 0.86 3E-05 43.3 6.8 109 150-267 52-161 (528)
73 3l84_A Transketolase; TKT, str 87.5 3.1 0.00011 40.7 10.4 101 148-263 394-496 (632)
74 1qs0_B 2-oxoisovalerate dehydr 87.4 1.7 5.7E-05 39.0 7.8 101 147-264 63-173 (338)
75 1r9j_A Transketolase; domains, 87.2 3.1 0.0001 41.0 10.3 101 150-264 416-518 (673)
76 2ozl_B PDHE1-B, pyruvate dehyd 87.2 1.7 5.9E-05 39.1 7.8 99 147-264 73-183 (341)
77 2vk8_A Pyruvate decarboxylase 86.7 1.3 4.3E-05 42.5 7.0 107 151-266 57-169 (563)
78 3m49_A Transketolase; alpha-be 86.3 3 0.0001 41.2 9.6 102 148-263 439-542 (690)
79 1ovm_A Indole-3-pyruvate decar 85.6 1.7 5.8E-05 41.4 7.3 107 150-266 57-169 (552)
80 3lq1_A 2-succinyl-5-enolpyruvy 85.5 1.7 5.9E-05 41.7 7.3 108 151-266 64-177 (578)
81 2vbf_A Branched-chain alpha-ke 85.1 2.1 7.1E-05 41.0 7.7 106 151-266 78-189 (570)
82 1ik6_A Pyruvate dehydrogenase; 85.0 3.9 0.00013 37.1 9.2 99 147-263 109-218 (369)
83 1umd_B E1-beta, 2-OXO acid deh 83.4 6.4 0.00022 34.8 9.7 98 148-263 63-171 (324)
84 3uk1_A Transketolase; structur 82.2 7.9 0.00027 38.4 10.6 100 149-263 461-562 (711)
85 1w85_B Pyruvate dehydrogenase 81.3 4.3 0.00015 36.0 7.7 99 147-263 61-170 (324)
86 3rim_A Transketolase, TK; TPP, 80.3 8.3 0.00028 38.2 10.0 101 149-263 445-549 (700)
87 2bfd_B 2-oxoisovalerate dehydr 78.8 4.7 0.00016 36.1 7.1 100 147-263 78-188 (342)
88 3hww_A 2-succinyl-5-enolpyruvy 76.2 9.8 0.00033 36.2 8.9 106 151-266 61-170 (556)
89 2c42_A Pyruvate-ferredoxin oxi 75.8 6.9 0.00024 41.3 8.2 109 149-269 67-175 (1231)
90 3ibs_A Conserved hypothetical 71.5 15 0.0005 29.6 7.9 72 165-236 111-197 (218)
91 2yic_A 2-oxoglutarate decarbox 67.5 12 0.00043 37.9 7.7 107 147-262 595-707 (868)
92 2xt6_A 2-oxoglutarate decarbox 66.6 13 0.00043 38.9 7.7 107 147-262 840-952 (1113)
93 2jgd_A 2-oxoglutarate dehydrog 62.5 15 0.00051 37.6 7.1 105 147-262 663-775 (933)
94 4hhu_A OR280; engineered prote 60.4 10 0.00035 28.8 4.2 35 226-260 81-115 (170)
95 2kl8_A OR15; structural genomi 51.6 20 0.00068 24.2 4.0 29 232-260 5-33 (85)
96 2q5c_A NTRC family transcripti 43.6 64 0.0022 26.1 6.9 83 168-255 96-186 (196)
97 1pyo_A Caspase-2; apoptosis, c 39.5 61 0.0021 25.7 6.0 49 218-266 61-109 (167)
98 2a2p_A Selenoprotein M, SELM p 38.2 21 0.0007 27.5 2.8 33 12-44 56-88 (129)
99 2pju_A Propionate catabolism o 38.1 67 0.0023 26.8 6.3 82 168-255 108-197 (225)
100 2h54_A Caspase-1; allosteric s 36.5 55 0.0019 26.3 5.3 69 196-265 45-115 (178)
101 3c5c_A RAS-like protein 12; GD 36.4 1.4E+02 0.0047 23.0 7.7 59 192-254 126-185 (187)
102 3hbm_A UDP-sugar hydrolase; PS 36.2 90 0.0031 26.8 7.1 33 169-202 3-37 (282)
103 3t5g_A GTP-binding protein RHE 34.6 1.4E+02 0.0047 22.5 7.4 61 193-257 111-171 (181)
104 3ghf_A Septum site-determining 34.3 59 0.002 24.3 4.8 46 222-267 10-57 (120)
105 1on3_A Methylmalonyl-COA carbo 33.9 51 0.0017 31.3 5.4 14 194-207 168-181 (523)
106 1x0u_A Hypothetical methylmalo 33.6 43 0.0015 31.8 4.8 14 194-207 164-177 (522)
107 2khz_A C-MYC-responsive protei 32.8 83 0.0028 24.7 5.8 35 166-203 79-113 (165)
108 3hyn_A Putative signal transdu 30.4 52 0.0018 26.9 4.1 37 165-202 80-118 (189)
109 2bzr_A Propionyl-COA carboxyla 28.9 57 0.002 31.2 4.8 18 186-203 136-153 (548)
110 3av3_A Phosphoribosylglycinami 28.5 1.2E+02 0.0041 24.8 6.3 82 166-267 5-91 (212)
111 2f9i_B Acetyl-coenzyme A carbo 28.5 74 0.0025 27.6 5.1 16 192-207 193-208 (285)
112 4ds3_A Phosphoribosylglycinami 28.2 1E+02 0.0035 25.4 5.7 81 165-266 8-94 (209)
113 3iav_A Propionyl-COA carboxyla 28.0 62 0.0021 30.8 4.9 14 194-207 170-183 (530)
114 2elf_A Protein translation elo 26.9 1.7E+02 0.0057 26.0 7.4 105 164-271 84-205 (370)
115 3con_A GTPase NRAS; structural 26.5 1.2E+02 0.0042 23.0 5.8 53 193-250 126-181 (190)
116 2x24_A Acetyl-COA carboxylase; 26.3 51 0.0017 33.0 4.0 44 164-207 119-170 (793)
117 1m72_A Caspase-1; caspase, cys 25.4 76 0.0026 27.2 4.6 34 218-251 59-92 (272)
118 1qtn_A Caspase-8; apoptosis, d 25.3 1.5E+02 0.005 23.4 6.0 48 218-266 58-105 (164)
119 3h11_A CAsp8 and FADD-like apo 25.3 1.9E+02 0.0064 24.8 7.1 51 216-266 55-105 (272)
120 1vrg_A Propionyl-COA carboxyla 25.0 96 0.0033 29.4 5.6 13 194-206 171-183 (527)
121 3od5_A Caspase-6; caspase doma 24.7 1.2E+02 0.0042 25.9 5.9 69 196-265 23-95 (278)
122 2ywr_A Phosphoribosylglycinami 24.5 74 0.0025 26.2 4.2 82 166-267 3-89 (216)
123 3lou_A Formyltetrahydrofolate 24.3 2.4E+02 0.0081 24.4 7.7 52 165-235 96-150 (292)
124 3p45_A Caspase-6; protease, hu 24.0 1.2E+02 0.0041 24.4 5.2 48 218-266 72-119 (179)
125 2nly_A BH1492 protein, diverge 23.8 1.9E+02 0.0065 24.4 6.7 49 219-268 141-195 (245)
126 3kcq_A Phosphoribosylglycinami 23.5 62 0.0021 26.9 3.5 55 165-236 9-66 (215)
127 3n6r_B Propionyl-COA carboxyla 22.9 98 0.0033 29.4 5.1 15 194-208 178-192 (531)
128 3cf4_G Acetyl-COA decarboxylas 22.7 66 0.0023 25.2 3.5 34 165-198 34-67 (170)
129 3tqr_A Phosphoribosylglycinami 22.7 1.5E+02 0.0051 24.5 5.8 81 166-267 7-92 (215)
130 2j32_A Caspase-3; Pro-caspase3 22.7 1.1E+02 0.0037 25.8 5.0 34 218-251 44-77 (250)
131 2qv5_A AGR_C_5032P, uncharacte 22.6 1.5E+02 0.0051 25.3 5.9 47 220-267 169-220 (261)
132 3q85_A GTP-binding protein REM 22.5 1.7E+02 0.0057 21.5 5.7 54 193-250 109-165 (169)
133 2dko_A Caspase-3; low barrier 22.3 1.3E+02 0.0043 23.3 4.9 48 218-266 44-91 (146)
134 4aec_A Cysteine synthase, mito 22.0 2.1E+02 0.0072 26.2 7.2 60 188-261 193-252 (430)
135 3oes_A GTPase rhebl1; small GT 22.0 2.7E+02 0.0093 21.3 8.2 57 193-253 129-185 (201)
136 2o3a_A UPF0106 protein AF_0751 21.9 1.2E+02 0.004 24.4 4.6 41 219-263 23-63 (178)
137 1nw9_B Caspase 9, apoptosis-re 21.7 2E+02 0.0067 24.5 6.6 49 217-266 48-96 (277)
138 3sir_A Caspase; hydrolase; 2.6 21.1 1.2E+02 0.004 25.8 4.9 55 196-250 22-79 (259)
139 2nn3_C Caspase-1; cysteine pro 20.9 1E+02 0.0035 27.0 4.6 56 196-251 62-120 (310)
140 3e4c_A Caspase-1; zymogen, inf 20.8 1.3E+02 0.0045 26.2 5.2 34 218-251 85-118 (302)
141 2x5n_A SPRPN10, 26S proteasome 20.7 91 0.0031 25.0 4.0 33 168-200 110-142 (192)
142 1j0a_A 1-aminocyclopropane-1-c 20.6 3.8E+02 0.013 22.9 8.4 41 187-238 89-129 (325)
143 3da8_A Probable 5'-phosphoribo 20.4 1.5E+02 0.0052 24.4 5.3 80 166-267 14-98 (215)
144 1f1j_A Caspase-7 protease; cas 20.1 1.1E+02 0.0037 26.8 4.6 56 196-251 71-130 (305)
145 3o1l_A Formyltetrahydrofolate 20.1 4.3E+02 0.015 22.9 9.9 52 165-235 106-160 (302)
No 1
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=100.00 E-value=4.2e-63 Score=465.77 Aligned_cols=274 Identities=49% Similarity=0.846 Sum_probs=260.3
Q ss_pred CccccCCCCCCCCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccccccCChhHHHHHHH
Q 023827 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIAS 80 (276)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~ 80 (276)
|+|++++....+|++||||+||+++++...+.+++++++++|+.|+++|.||+++.+++++|+++|++++.||||+++++
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~~~~~~~GqEa~~vg~ 99 (400)
T 2bfd_A 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGS 99 (400)
T ss_dssp CCCCCCCCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHH
T ss_pred eeeccCcccCCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCCChHHHHHHH
Confidence 67888887789999999999999987765678999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCcEEEccCCcHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccccccccccchhhhHHHHhh
Q 023827 81 AAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 160 (276)
Q Consensus 81 ~~al~~~D~~~~~yR~~~~~~~~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~A~G~A~a~k 160 (276)
+.+|+++|+++++||+|++++.+|++++++|.+++++.+++++|+++++|+...+.++.+.+|+||+++|+|+|+|+|.|
T Consensus 100 ~~al~~~D~v~~~yR~~~~~~~~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~AvG~AlA~~ 179 (400)
T 2bfd_A 100 AAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 179 (400)
T ss_dssp HHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHH
T ss_pred HHhcCCCCEEEecCcCHHHHHHcCCCHHHHHHHhcCCCCCCCCCCCCCcCCcccccCccccCccccccccHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999988777888889999999999999999999
Q ss_pred hcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHH
Q 023827 161 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240 (276)
Q Consensus 161 ~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~ 240 (276)
+++++++|||++|||++++|.+||+|++|++|+||+||||+||+|+++++.....+.+++++++++|||++++|||+|++
T Consensus 180 ~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~ 259 (400)
T 2bfd_A 180 RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 259 (400)
T ss_dssp HHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGGTCEEEEEETTCHH
T ss_pred hhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCceeeeecccccCCCCCHHHHHHHcCCcEEEEeCCCHH
Confidence 99999999999999999999999999999999999999999999999998887777789999999999999999999999
Q ss_pred HHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 241 AIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 241 ~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
++++++++|++++|++++|+|||++|||++|||+
T Consensus 260 av~~a~~~A~~~ar~~~~P~lIe~~tyR~~gHs~ 293 (400)
T 2bfd_A 260 AVYNATKEARRRAVAENQPFLIEAMTYRIGHAST 293 (400)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEeeeeCCCCC
Confidence 9999999999999999999999999999999986
No 2
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=100.00 E-value=6e-60 Score=444.64 Aligned_cols=263 Identities=36% Similarity=0.483 Sum_probs=250.5
Q ss_pred CCCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhccCCCcEE
Q 023827 11 RIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFV 90 (276)
Q Consensus 11 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~~~D~~ 90 (276)
.++++||||++|+++++. .+.+++++++++|+.|+++|.||+++..+++||+++|++++.||||++++++.+|+++|++
T Consensus 50 ~~~~~~~ld~~g~~~~~~-~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~~~~~~~~GqEA~~vg~~~al~~~D~v 128 (407)
T 1qs0_A 50 SYSLVRVLDEQGDAQGPW-AEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMC 128 (407)
T ss_dssp HTSCBCCBCTTSCBCSGG-GSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSCTTSEE
T ss_pred CCCeEEEECCCCCCCCcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCcCCCChHHHHHHHHHhcCCCCEE
Confidence 368999999999988754 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCcHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccccccccccchhhhHHHHhhhcCCCceEEE
Q 023827 91 VPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVT 170 (276)
Q Consensus 91 ~~~yR~~~~~~~~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~ 170 (276)
+++||+|++.+++|+++.++|.+++|+.++.++|+++++|+.....++++.+|+||+++|+|+|+|+|.|+++++++|||
T Consensus 129 ~~~yR~~~~~l~~g~~~~~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~ 208 (407)
T 1qs0_A 129 FPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASA 208 (407)
T ss_dssp ECCSSCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred EecccchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHHhCCCCEEEE
Confidence 99999999999999999999999999999988999999999887778999999999999999999999999999999999
Q ss_pred EECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCcc-CCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHH
Q 023827 171 YFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAA 249 (276)
Q Consensus 171 ~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~-~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a 249 (276)
++|||++++|.+||+|++|++|+||+||||+||+|+++++..... ..+++++++++|||++++|||+|++++++++++|
T Consensus 209 i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A 288 (407)
T 1qs0_A 209 WIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWA 288 (407)
T ss_dssp EEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHH
T ss_pred EECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcceeeccccccCCCCCHHHHHHHcCCeEEEEcCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998876655 5679999999999999999999999999999999
Q ss_pred HHHhHccCCCEEEEEEEecCCCCCC
Q 023827 250 REMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 250 ~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
++++|++++|+|||++|||..|||.
T Consensus 289 ~~~ar~~~gP~lIe~~t~R~~Ghs~ 313 (407)
T 1qs0_A 289 AERARRGLGPSLIEWVTYRAGPHST 313 (407)
T ss_dssp HHHHHTTSCCEEEEEECCCCSCSST
T ss_pred HHHHHhcCCCEEEEEEeeccCCcCC
Confidence 9999999999999999999999986
No 3
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=100.00 E-value=5.9e-58 Score=426.52 Aligned_cols=255 Identities=36% Similarity=0.601 Sum_probs=239.2
Q ss_pred CCCCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhccCCCcE
Q 023827 10 ERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDF 89 (276)
Q Consensus 10 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~~~D~ 89 (276)
..+|++||||+||+++++...+.+++++++++|+.|+++|.||+++.+++++|+++|++++.||||++++++.+|+++|+
T Consensus 18 ~~~~~~~~l~~~g~~~~~~~~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~g~~~~~~G~Ea~~vg~~~~l~~~D~ 97 (368)
T 1w85_A 18 EQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDF 97 (368)
T ss_dssp HTCCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCCTTCE
T ss_pred CCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCCHHHHHHHHHHhcCCcCE
Confidence 46789999999999987655578999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccccccccccchhhhHHHHhhhcCCCceEE
Q 023827 90 VVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAV 169 (276)
Q Consensus 90 ~~~~yR~~~~~~~~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv 169 (276)
++++||+|++++.+|.++.++|.+++|+.+ |+ ++| ...++.+.+|+||+++|+|+|+|+|.|+++++++||
T Consensus 98 v~~~~R~~~~~~~~G~~~~~~~~el~G~~~----G~--~~h---~~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv 168 (368)
T 1w85_A 98 ILPGYRDVPQIIWHGLPLYQAFLFSRGHFH----GN--QIP---EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAI 168 (368)
T ss_dssp EECCSSCHHHHHHTTCCHHHHHHHHHTCGG----GG--CCC---TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEE
T ss_pred EEecchhHHHHHhcCCCHHHHHHHHCCCCC----CC--CCC---cccccCCCccccCccccHHHHHHHHhHhhCCCCeEE
Confidence 999999999999999999999999999754 32 344 346788889999999999999999999999999999
Q ss_pred EEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHH
Q 023827 170 TYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAA 249 (276)
Q Consensus 170 ~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a 249 (276)
|++|||++++|.+||+|++|++|+||+||||+||+|+++++.....+.+++++++++|||++++|||+|++++++++++|
T Consensus 169 ~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A 248 (368)
T 1w85_A 169 TYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAA 248 (368)
T ss_dssp EEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHH
T ss_pred EEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccceeccccccCCCCHHHHHHHCCCCEEEEcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988777777789999999999999999999999999999999
Q ss_pred HHHhHccCCCEEEEEEEecCCCCC
Q 023827 250 REMAIGEGRPILIEVKCLSFSIFL 273 (276)
Q Consensus 250 ~~~~r~~~~P~lIe~~t~R~~g~~ 273 (276)
++++|++++|+|||++|||.+|||
T Consensus 249 ~~~~r~~~gP~lIe~~t~r~~gHs 272 (368)
T 1w85_A 249 RERAINGEGPTLIETLCFRYGPHT 272 (368)
T ss_dssp HHHHHTTSCCEEEEEECCCSSCSC
T ss_pred HHHHHhcCCCEEEEEEeeccCCCC
Confidence 999999999999999999999998
No 4
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=100.00 E-value=3.2e-56 Score=414.12 Aligned_cols=255 Identities=25% Similarity=0.388 Sum_probs=233.5
Q ss_pred CeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcc-cccccCChhHHHHHHHHhccCCCcEEE
Q 023827 13 PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVV 91 (276)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~-~~~~~~~G~Ea~~~~~~~al~~~D~~~ 91 (276)
..+++.+-+.. +.+.+.+++++++++|+.|+++|.||+++..++++|++ +|++++.||||+++++..+|+++|+++
T Consensus 14 ~~~~~~~~~~~---~~~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~~~D~i~ 90 (365)
T 2ozl_A 14 KKCDLHRLEEG---PPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 90 (365)
T ss_dssp CCCEEESCSCC---SCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCTTSEEE
T ss_pred CccccccCCCC---ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhCCCCEEe
Confidence 44666654321 12345799999999999999999999999999999999 799999999999999999999999999
Q ss_pred ccCCcHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccccccccccchhhhHHHHhhhcCCCceEEEE
Q 023827 92 PQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTY 171 (276)
Q Consensus 92 ~~yR~~~~~~~~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~ 171 (276)
++||+|++.+++|+++.++|.+++|+.+++++|+++++|+.+ .++.+.+|+||+++|+|+|+|+|.|+++++++|||+
T Consensus 91 ~~yR~~~~~~~~G~~~~~i~~e~~g~~~g~~~g~gg~~H~~~--~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~ 168 (365)
T 2ozl_A 91 TAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYA--KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTL 168 (365)
T ss_dssp CCSCCHHHHHHTTCCHHHHHHHHTTCTTSTTTTSSCTTCCCB--TTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEE
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCCCcCc--cccCCCcchhhhhhHHHHHHHHHHHhcCCCceEEEE
Confidence 999999999999999999999999999999888888889853 578888899999999999999999999999999999
Q ss_pred ECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHH
Q 023827 172 FGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAARE 251 (276)
Q Consensus 172 ~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~ 251 (276)
+|||++++|.+||+||+|+.|+||+||||+||+|+++++.......+++++ ++||+++++|||+|++++++++++|++
T Consensus 169 ~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~~g~~t~~~~~~~~~~~~~--ra~g~p~~~VdG~D~~av~~a~~~A~~ 246 (365)
T 2ozl_A 169 YGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYK--RGDFIPGLRVDGMDILCVREATRFAAA 246 (365)
T ss_dssp EETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGG--TTTTSCEEEEETTCHHHHHHHHHHHHH
T ss_pred ECchhhhccHHHHHHHHHHHHCcCEEEEEECCCcccCCCcccccCCCCHHH--HhCCCCEEEEeCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987665555677776 689999999999999999999999999
Q ss_pred HhHccCCCEEEEEEEecCCCCCC
Q 023827 252 MAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 252 ~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
++|++++|+|||++|||.+|||+
T Consensus 247 ~~r~~~gP~lIe~~t~R~~gHs~ 269 (365)
T 2ozl_A 247 YCRSGKGPILMELQTYRYHGHEM 269 (365)
T ss_dssp HHHTTCCCEEEEEECCCSSCSST
T ss_pred HHHhCCCCEEEEEEeecCCCCCC
Confidence 99999999999999999999986
No 5
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=100.00 E-value=6.8e-56 Score=413.09 Aligned_cols=264 Identities=38% Similarity=0.544 Sum_probs=251.2
Q ss_pred CCCCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhccCCC-c
Q 023827 10 ERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKND-D 88 (276)
Q Consensus 10 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~~~-D 88 (276)
..+|++||||+||+++++ ..+.+++++++++|+.|+++|.||.++..++++|++++++++.|+|++++++..+++++ |
T Consensus 11 ~~~~~~~~l~~~g~~~~~-~~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~~rD 89 (367)
T 1umd_A 11 FTEEPIRLIGEEGEWLGD-FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFD 89 (367)
T ss_dssp SCSSCBCCBCTTSCBCCS-SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTS
T ss_pred CCCCeEEEECCCCCCCCc-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCCCCc
Confidence 467999999999999877 45789999999999999999999999999999999999999999999999999999998 9
Q ss_pred EEEccCCcHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccccccccccchhhhHHHHhhhcCCCceE
Q 023827 89 FVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 168 (276)
Q Consensus 89 ~~~~~yR~~~~~~~~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~A~G~A~a~k~~~~~~~v 168 (276)
+++++||++++++.+|+++.++|.+++++.++++.|+++++|+.....++.+++|++|+++|+|+|+|+|.|+.+++++|
T Consensus 90 ~i~~s~r~~~~~~~~G~~~~~~l~~~~g~~~g~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~v 169 (367)
T 1umd_A 90 WVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVA 169 (367)
T ss_dssp EEECCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCE
T ss_pred EEEeCcHHHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCCCCCcccccCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeE
Confidence 99999999999999999999999999999999999999999998777788889999999999999999999999999999
Q ss_pred EEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHH
Q 023827 169 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 248 (276)
Q Consensus 169 v~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~ 248 (276)
||++|||++++|.+||+|++|++|++|+|+||+||+|+++++.....+..++++++++|||++++|||+|+.++++++++
T Consensus 170 v~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~ 249 (367)
T 1umd_A 170 VCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKE 249 (367)
T ss_dssp EEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHH
T ss_pred EEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCeeeccChhhccCCCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998876666678999999999999999999999999999999
Q ss_pred HHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 249 AREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 249 a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
|+++++++++|+|||++|+|..||++
T Consensus 250 A~~~a~~~~gP~lIe~~t~r~~Ghs~ 275 (367)
T 1umd_A 250 AVERARRGEGPSLVELRVYRYGPHSS 275 (367)
T ss_dssp HHHHHHTTCCCEEEEEECCCCSCSST
T ss_pred HHHHHHhcCCCEEEEEEeecCCCCCC
Confidence 99999999999999999999999985
No 6
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=1.6e-47 Score=387.63 Aligned_cols=260 Identities=16% Similarity=0.149 Sum_probs=218.8
Q ss_pred CCCeeEeeCCCCC-CCC----CCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhcc-
Q 023827 11 RIPCYRVLDDDGQ-PFP----DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAI- 84 (276)
Q Consensus 11 ~~~~~~~~~~~g~-~~~----~~~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al- 84 (276)
.+|+.+|.|++++ ++. ... +.+++++++++|+.|+++|.||+++..++++|+. | +..|||++++++..+|
T Consensus 89 g~e~~~i~~~~~~~w~~~~~e~~~-~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~-~--g~~G~Ea~~~g~~~~l~ 164 (868)
T 2yic_A 89 GVEYTHILEPEQQRWIQERVETKH-DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKR-F--SLEGAETVIPMMDAVID 164 (868)
T ss_dssp EEECTTCSCHHHHHHHHHHHSSCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGG-G--CCTTCTTHHHHHHHHHH
T ss_pred CcceeccCChHHhHHHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-c--cCCChHHHHHHHHHHHH
Confidence 4566677777766 222 122 6899999999999999999999999999998874 2 3499999999988664
Q ss_pred -----CCCcEEEc-cCCcHHHHHH--cCCCHHHHHHHhhcCCCCC-C-CCCCCccccCCCC------------CCccccc
Q 023827 85 -----KNDDFVVP-QYREPGVLLW--RGFSMQEFANQCFGNKADY-G-KGRQMPIHYGSNK------------HNYFTVS 142 (276)
Q Consensus 85 -----~~~D~~~~-~yR~~~~~~~--~G~~~~~~l~~~~~~~~~~-~-~G~~~~~h~~~~~------------~~~~~~~ 142 (276)
+++|++++ +||+|++.++ +|+++.++|++|+|+.+++ + .|+++++|+.... .++.+++
T Consensus 165 ~~~~l~~~D~v~gm~hRg~~~~Lan~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~ 244 (868)
T 2yic_A 165 QCAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANP 244 (868)
T ss_dssp HHHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHTTTCC------------CGGGTCCEEEEEECSSSSCEEEEEECCCC
T ss_pred HhhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCC
Confidence 58999998 7999999999 9999999999999998876 3 4556788876421 2455678
Q ss_pred cccccccchhhhHHHHhhhcC----------CCceEEEEECCCcC-CcchHHHHHHHHHHCCCC---EEEEEEeCCcccc
Q 023827 143 STIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAIS 208 (276)
Q Consensus 143 g~lG~~l~~A~G~A~a~k~~~----------~~~~vv~~~GDG~~-~~G~~~Eal~~A~~~~Lp---vi~vv~nN~~~~~ 208 (276)
++||+++|+|+|+|+|.|+++ .+.+++|++|||+| ++|.+||+||+|+.|+|| +||||+||+|+++
T Consensus 245 s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g~s 324 (868)
T 2yic_A 245 SHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFT 324 (868)
T ss_dssp SSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCBTT
T ss_pred ccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcccc
Confidence 999999999999999999864 56799999999997 899999999999999998 9999999999999
Q ss_pred ccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 209 TPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 209 ~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
++.....+.+++++++++|||++++|||+|++++++++++|++++|++++|+|||++|||.+|||+
T Consensus 325 t~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~GHs~ 390 (868)
T 2yic_A 325 TAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNE 390 (868)
T ss_dssp BCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSST
T ss_pred cCccccccccCHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCcCc
Confidence 976655556678899999999999999999999999999999999999999999999999999996
No 7
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=2.6e-46 Score=380.72 Aligned_cols=261 Identities=13% Similarity=0.126 Sum_probs=212.4
Q ss_pred CCCeeEeeCCCCC-CCCCC---CCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhccC-
Q 023827 11 RIPCYRVLDDDGQ-PFPDS---SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK- 85 (276)
Q Consensus 11 ~~~~~~~~~~~g~-~~~~~---~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~- 85 (276)
.+|+.+|+|++++ ++.+. ..+.+++|+++++|+.|+++|.||+++.+++++||. ++..|||++.+++..+++
T Consensus 169 g~e~~~i~~~~~~~w~~~~~e~~~~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkr---f~~~G~Ea~i~g~~~~~~~ 245 (933)
T 2jgd_A 169 GAEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKR---FSLEGGDALIPMLKEMIRH 245 (933)
T ss_dssp EEECSSCCCHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--C---CCCTTCTTHHHHHHHHHHH
T ss_pred cceeeecCCHHHhHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccCCCchHHHHHHHHHHHH
Confidence 4678899998887 33221 146799999999999999999999999999999872 346999999998665554
Q ss_pred -----CCcEEEc-cCCcHHHHHH--cCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCC----------Ccccccccccc
Q 023827 86 -----NDDFVVP-QYREPGVLLW--RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKH----------NYFTVSSTIAT 147 (276)
Q Consensus 86 -----~~D~~~~-~yR~~~~~~~--~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~~----------~~~~~~g~lG~ 147 (276)
++|++++ +||+|+++++ +|.++.++|++++|+.++.+.++++++|+..... .+.++++++|.
T Consensus 246 a~~~g~~D~v~g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~ 325 (933)
T 2jgd_A 246 AGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEI 325 (933)
T ss_dssp HHTTTCCEEEEECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTC
T ss_pred HhhCCCCCEEecCCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCccccc
Confidence 6999996 8999999999 9999999999999998887767778889865321 23467899999
Q ss_pred ccchhhhHHHHhhhcC-----CCceEEEEECCCcC-CcchHHHHHHHHHHCCCC---EEEEEEeCCccccc-cccCccCC
Q 023827 148 QLPHAVGAAYALKMDR-----KDACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAIST-PISDQFRS 217 (276)
Q Consensus 148 ~l~~A~G~A~a~k~~~-----~~~~vv~~~GDG~~-~~G~~~Eal~~A~~~~Lp---vi~vv~nN~~~~~~-~~~~~~~~ 217 (276)
++|+|+|+|+|.++++ .+.++||++|||++ ++|.+||+||+|+.+++| +|+||+||+|++++ +...+...
T Consensus 326 ~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist~~~~~~~~~ 405 (933)
T 2jgd_A 326 VSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARST 405 (933)
T ss_dssp HHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC--------------
T ss_pred ccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccCCCHHhcccc
Confidence 9999999999999874 67899999999998 899999999999999999 99999999999999 88776667
Q ss_pred cchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 218 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 218 ~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
.++++++++|||++++|||+|++++++++++|++++|++++|+|||++|||+.|||+
T Consensus 406 ~~~~~~a~a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~ 462 (933)
T 2jgd_A 406 PYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNE 462 (933)
T ss_dssp -CGGGGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC----
T ss_pred hhHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeecCcCc
Confidence 789999999999999999999999999999999999999999999999999999985
No 8
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=2.1e-45 Score=380.11 Aligned_cols=260 Identities=16% Similarity=0.145 Sum_probs=217.2
Q ss_pred CCCeeEeeCCCCC-CCCC----CCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhc--
Q 023827 11 RIPCYRVLDDDGQ-PFPD----SSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAA-- 83 (276)
Q Consensus 11 ~~~~~~~~~~~g~-~~~~----~~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~a-- 83 (276)
++|+.+|.|++++ ++.+ .. +.+++++++++|+.|+++|.||+++..++++|+. | +..|||++++++..+
T Consensus 334 g~e~~~i~~~~~~~w~~~~~e~~~-~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~-~--g~~GqEa~~~g~~~~l~ 409 (1113)
T 2xt6_A 334 GVEYTHILEPEQQRWIQERVETKH-DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKR-F--SLEGAETVIPMMDAVID 409 (1113)
T ss_dssp EEECTTCSCHHHHHHHHHHHHSCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGG-G--CCTTCTTHHHHHHHHHH
T ss_pred CcceeccCCHHHhHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-c--cCCChHHHHHHHHHHHH
Confidence 4466677777765 2221 22 6799999999999999999999999999998874 2 349999999998766
Q ss_pred ----cCCCcEEEc-cCCcHHHHHH--cCCCHHHHHHHhhcCCCCC-C-CCCCCccccCCCC------------CCccccc
Q 023827 84 ----IKNDDFVVP-QYREPGVLLW--RGFSMQEFANQCFGNKADY-G-KGRQMPIHYGSNK------------HNYFTVS 142 (276)
Q Consensus 84 ----l~~~D~~~~-~yR~~~~~~~--~G~~~~~~l~~~~~~~~~~-~-~G~~~~~h~~~~~------------~~~~~~~ 142 (276)
++++|++++ +||+|++.++ +|+++.++|++|+|+.+++ + .|+++++|+.... .++.+++
T Consensus 410 ~~~~l~~~D~v~gm~hRg~~~~La~~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~ 489 (1113)
T 2xt6_A 410 QCAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANP 489 (1113)
T ss_dssp HHHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHSTTC-------------CGGGTCCEEEEEECSSSSCEEEEEECCCC
T ss_pred HhhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCC
Confidence 558999998 7999999999 9999999999999998876 3 4556788876421 2355678
Q ss_pred cccccccchhhhHHHHhhhcC----------CCceEEEEECCCcC-CcchHHHHHHHHHHCCCC---EEEEEEeCCcccc
Q 023827 143 STIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAIS 208 (276)
Q Consensus 143 g~lG~~l~~A~G~A~a~k~~~----------~~~~vv~~~GDG~~-~~G~~~Eal~~A~~~~Lp---vi~vv~nN~~~~~ 208 (276)
|+||+++|+|+|+|+|.|+++ .+.+++|++|||+| ++|.+||+||+|+.|+|| +||||+||+|+++
T Consensus 490 s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gis 569 (1113)
T 2xt6_A 490 SHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFT 569 (1113)
T ss_dssp SSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTT
T ss_pred ccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcccc
Confidence 999999999999999999865 57899999999996 899999999999999998 9999999999999
Q ss_pred ccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 209 TPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 209 ~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
++.....+..++.+++++|||++++|||+|++++++++++|++++|++++|+|||++|||.+|||+
T Consensus 570 t~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~GHs~ 635 (1113)
T 2xt6_A 570 TAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNE 635 (1113)
T ss_dssp BCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSST
T ss_pred cCccccccccCHHHHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccCCcCC
Confidence 976545555668899999999999999999999999999999999999999999999999999986
No 9
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.8e-34 Score=281.03 Aligned_cols=227 Identities=14% Similarity=0.144 Sum_probs=176.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhccC-CCcEEE--ccCCcHHHHHHcC
Q 023827 28 SSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVV--PQYREPGVLLWRG 104 (276)
Q Consensus 28 ~~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~-~~D~~~--~~yR~~~~~~~~G 104 (276)
.|.++++.++|.++++.| |.+...+.. + ..+++.++.|++.+.+++..+++ +.|+++ ..||++++++.+|
T Consensus 18 ~d~~~l~~~~l~~l~~~i---R~~~~~~~~--~--~~Gh~~~~lg~~~~~~~l~~~~~~~~D~~v~~~gH~~y~~~~l~G 90 (621)
T 2o1s_A 18 QELRLLPKESLPKLCDEL---RRYLLDSVS--R--SSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAYPHKILTG 90 (621)
T ss_dssp HHHTTSCGGGHHHHHHHH---HHHHHHHSC--G--GGCTHHHHHTTHHHHHHHHHHSCTTTSEEEESSSTTCHHHHHTTT
T ss_pred HHhhhCCHHHHHHHHHHH---HHHHHHHHh--h--cCCCcCCChhHHHHHHHHHhccCCCCCEEEEeCchHHHHHHHHhC
Confidence 345689999999999998 655444331 2 23678889999999999988999 899988 6799999999999
Q ss_pred CCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccccccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHH
Q 023827 105 FSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFH 183 (276)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~-~~~~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~ 183 (276)
+ .+.+..++.. | +.+.|+.... ++....+|+||+++|+|+|+|+|.|+++++++|||++|||++++|.+|
T Consensus 91 ~--~~~~~~~r~~------~-g~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~G~~~ 161 (621)
T 2o1s_A 91 R--RDKIGTIRQK------G-GLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAF 161 (621)
T ss_dssp T--GGGGGGTTST------T-SCCSSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGGSHHHH
T ss_pred C--Hhhhhccccc------C-CCCCCCCCCCCCCCccCCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHH
Confidence 8 2334445442 2 2445655422 344556899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCEEEEEEeCCccccccccCccCC----------------------------------cch-------hh
Q 023827 184 AALNFSAVTEAPVIFICRNNGWAISTPISDQFRS----------------------------------DGA-------VV 222 (276)
Q Consensus 184 Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~----------------------------------~~~-------~~ 222 (276)
|+|++|+++++|+|+||+||+|+++++...+... .++ .+
T Consensus 162 EaL~~A~~~~~pli~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~p~~ 241 (621)
T 2o1s_A 162 EAMNHAGDIRPDMLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEHIKGMVVPGT 241 (621)
T ss_dssp HHHHHHHHHCCSEEEEEEECC--------------------------------------------------------CHH
T ss_pred HHHHHHHhhCCCEEEEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccChhh
Confidence 9999999999999999999999988765432100 011 47
Q ss_pred hHhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 223 KGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 223 ~a~a~G~~~~-~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
++++|||+++ +|||+|++++.+++++|++ .++|+||+++|+|.+||++
T Consensus 242 ~~ea~G~~~~g~vdG~d~~~l~~al~~A~~----~~gP~lI~v~t~kg~G~~~ 290 (621)
T 2o1s_A 242 LFEELGFNYIGPVDGHDVLGLITTLKNMRD----LKGPQFLHIMTKKGRGYEP 290 (621)
T ss_dssp HHHHTTCEEEEEEETTCHHHHHHHHHHHHH----SCSEEEEEEECCCTTCCCC
T ss_pred HHHHCCCeEeeeeCCCCHHHHHHHHHHHHH----cCCCEEEEEEEecccCCCh
Confidence 8999999999 9999999999999998875 4799999999999999984
No 10
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=99.97 E-value=7.8e-32 Score=266.64 Aligned_cols=224 Identities=16% Similarity=0.129 Sum_probs=169.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhccC-CCcEEEccCCcHH---HHHHcC
Q 023827 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQYREPG---VLLWRG 104 (276)
Q Consensus 29 ~~~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~-~~D~~~~~yR~~~---~~~~~G 104 (276)
|.+.++.++|.++|+.| |.+...+.. + ..++++++.|+-.+..++-..++ +.|+++.. |||+ +.+..|
T Consensus 21 d~~~l~~~~l~~l~~~i---R~~~~~~~~--~--~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~-~GH~~y~~~~l~G 92 (629)
T 2o1x_A 21 DLKRLSREQLPALTEEL---RGEIVRVCS--R--GGLHLASSLGAVDIITALHYVLDSPRDRILFD-VGHQAYAHKILTG 92 (629)
T ss_dssp HHTTSCGGGHHHHHHHH---HHHHHHHHT--T--SSSCHHHHHHTHHHHHHHHHHSCTTTSEEEES-SSTTCHHHHHTTT
T ss_pred hhhhCCHHHHHHHHHHH---HHHHHHHHH--h--cCCcCCCchhHHHHHHHHHhhcCCCCCeEEec-CchHHHHHHHHhC
Confidence 45679999999999999 654333322 1 23577788888555545544557 89999988 9985 666777
Q ss_pred CCHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHH
Q 023827 105 FSMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFH 183 (276)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~-~~~~~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~ 183 (276)
. .+.+..++.. + +.++|+... .++....+|+||+++|+|+|+|+|.|+++++++|||++|||++++|.+|
T Consensus 93 ~--~~~~~~~r~~------~-g~~G~p~~~~s~~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~ 163 (629)
T 2o1x_A 93 R--RDQMADIKKE------G-GISGFTKVSESEHDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMAL 163 (629)
T ss_dssp T--GGGGGGTTST------T-SCCSSCCGGGCTTCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHH
T ss_pred c--HhHHhCcccC------C-CCCCCCCCCCCCCCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHH
Confidence 6 2223333221 1 123444322 2345677899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCEEEEEEeCCccccccccCccC--------------------------C---------cc-h------h
Q 023827 184 AALNFSAVTEAPVIFICRNNGWAISTPISDQFR--------------------------S---------DG-A------V 221 (276)
Q Consensus 184 Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~--------------------------~---------~~-~------~ 221 (276)
|+|++|+++++|+|+||+||+|++++++..+.. . .+ + .
T Consensus 164 EaL~~A~~~~~pli~IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~p~ 243 (629)
T 2o1x_A 164 AALNTIGDMGRKMLIVLNDNEMSISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPA 243 (629)
T ss_dssp HHHHHHHHHCCSEEEEEEECSBSSSBCCSSHHHHC---------------------------------------------
T ss_pred HHHHHHHhhCCCEEEEEECCCCCCCCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhcCcc
Confidence 999999999999999999999998776542100 0 03 2 3
Q ss_pred --hhHhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCC
Q 023827 222 --VKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFL 273 (276)
Q Consensus 222 --~~a~a~G~~~~-~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~ 273 (276)
+++++|||+++ +|||+|++++.+++++|.+ .++|+||+++|+|.+|++
T Consensus 244 ~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~----~~~P~lI~v~t~kg~G~~ 294 (629)
T 2o1x_A 244 SVNPFAAMGVRYVGPVDGHNVQELVWLLERLVD----LDGPTILHIVTTKGKGLS 294 (629)
T ss_dssp CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTT----SSSEEEEEEECCTTTTCH
T ss_pred cchHHHhcCCeEEeeECCcCHHHHHHHHHHHHh----cCCCEEEEEEEecCCCCC
Confidence 78999999999 9999999999999988754 579999999999999986
No 11
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=99.97 E-value=2.6e-30 Score=257.02 Aligned_cols=216 Identities=18% Similarity=0.150 Sum_probs=169.5
Q ss_pred HHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhccC--C-------CcEEEc--cCCc---HHHHHHcCC-CHHHHH
Q 023827 47 TLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--N-------DDFVVP--QYRE---PGVLLWRGF-SMQEFA 111 (276)
Q Consensus 47 ~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~--~-------~D~~~~--~yR~---~~~~~~~G~-~~~~~l 111 (276)
.+|.+--.+......|+++..++.. |...+.....|+ | .|.++. .|-. .+++...|+ .+.+.|
T Consensus 29 ~iR~~~~~~v~~a~sGH~g~~ls~a--~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~~~~~~l 106 (700)
T 3rim_A 29 TIRVLAADAVQKVGNGHPGTAMSLA--PLAYTLFQRTMRHDPSDTHWLGRDRFVLSAGHSSLTLYIQLYLGGFGLELSDI 106 (700)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHTH--HHHHHHHHTTCCCCTTCTTCTTCCEEEESSTTCHHHHHHHHHHTTSSCCHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCccHHHH--HHHHHHHHHHhCCCCCCCCCCCCCeEEECCCchhHHHHHHHHHhCCCCCHHHH
Confidence 4455444444444567654332221 333333334665 2 476554 3555 245666787 666678
Q ss_pred HHhhcCCCCCCCCCCCccccCCC-CCCccccccccccccchhhhHHHHhhhc-------------CCCceEEEEECCCcC
Q 023827 112 NQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMD-------------RKDACAVTYFGDGGT 177 (276)
Q Consensus 112 ~~~~~~~~~~~~G~~~~~h~~~~-~~~~~~~~g~lG~~l~~A~G~A~a~k~~-------------~~~~~vv~~~GDG~~ 177 (276)
.+|+.. |+.+++|+... .+++..++|++|+++|.|+|+|+|.|+. +.+++|+|++|||++
T Consensus 107 ~~fr~~------gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l 180 (700)
T 3rim_A 107 ESLRTW------GSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDI 180 (700)
T ss_dssp TTTTST------TCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHH
T ss_pred HHhhcC------CCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCccc
Confidence 888764 67789999853 5788889999999999999999999974 467899999999999
Q ss_pred CcchHHHHHHHHHHCCC-CEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEE-cCCCHHHHHHHHHHHHHHhHc
Q 023827 178 SEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIG 255 (276)
Q Consensus 178 ~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~v-dg~d~~~v~~a~~~a~~~~r~ 255 (276)
++|.+|||+++|+.|+| |+|+||+||+|++++++... ...++.+++++|||++++| ||||++++++|+++|.+ .
T Consensus 181 ~eG~~~EAl~~A~~~~L~nli~i~d~N~~si~~~~~~~-~~~~~~~~~~a~G~~~~~V~DG~D~~al~~Al~~A~~---~ 256 (700)
T 3rim_A 181 EEGVTSEASSLAAVQQLGNLIVFYDRNQISIEDDTNIA-LCEDTAARYRAYGWHVQEVEGGENVVGIEEAIANAQA---V 256 (700)
T ss_dssp HSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGT-CCCCHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH---C
T ss_pred ccChHHHHHHHHHHcCCCcEEEEEECCCcccccchhhc-cchhHHHHHHHcCCeEEEECCCCCHHHHHHHHHHHHH---c
Confidence 99999999999999999 59999999999999888754 3688999999999999999 99999999999998875 3
Q ss_pred cCCCEEEEEEEecCCCCCC
Q 023827 256 EGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 256 ~~~P~lIe~~t~R~~g~~~ 274 (276)
.++|+||+|+|+|.+||++
T Consensus 257 ~~~P~lI~~~T~kG~G~~~ 275 (700)
T 3rim_A 257 TDRPSFIALRTVIGYPAPN 275 (700)
T ss_dssp CSSCEEEEEECCTTTTCTT
T ss_pred CCCCEEEEEEEEeeecCCc
Confidence 6799999999999999985
No 12
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=99.97 E-value=1.3e-29 Score=249.97 Aligned_cols=230 Identities=19% Similarity=0.156 Sum_probs=174.6
Q ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhccC---------CCcEEEcc--CCcH--
Q 023827 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQ--YREP-- 97 (276)
Q Consensus 31 ~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~---------~~D~~~~~--yR~~-- 97 (276)
.+++..+..+|-+....+|.+--.+......|+++-..+. -|...+.....|+ +.|.++.+ |-..
T Consensus 3 ~~~~~~~~~~l~~~a~~iR~~~i~~~~~~~~GH~g~~l~~--~e~~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~l 80 (616)
T 3mos_A 3 HKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSA--AEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPIL 80 (616)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHTT--HHHHHHHHHTTCBCCTTCTTCTTSCEEEESSGGGHHHH
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHhcCCCcCCcchhH--HHHHHHHHHHhhccCCCCCCCCCCCeEEEcCccHHHHH
Confidence 3566666666666666677664444444445665432221 1333322223342 24766543 4442
Q ss_pred -HHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccccccccccchhhhHHHHhhhcCC-CceEEEEECCC
Q 023827 98 -GVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK-DACAVTYFGDG 175 (276)
Q Consensus 98 -~~~~~~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~A~G~A~a~k~~~~-~~~vv~~~GDG 175 (276)
+++...|+...+.|.+++.. |+++++|+....+++...+|+||+++|.|+|+|+|.|+.+. +++|||++|||
T Consensus 81 y~~~~l~G~~~~~~l~~~r~~------~s~l~ghp~~~~~~~d~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG 154 (616)
T 3mos_A 81 YAVWAEAGFLAEAELLNLRKI------SSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDG 154 (616)
T ss_dssp HHHHHHTTSSCGGGGGGTTCT------TCSCCSSCCTTSTTCSSCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETG
T ss_pred HHHHHHcCCCCHHHHHHhccC------CCCCCCCCCCCCCcccccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 35556787666667777753 67889999866677777899999999999999999986554 58999999999
Q ss_pred cCCcchHHHHHHHHHHCCCC-EEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhH
Q 023827 176 GTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAI 254 (276)
Q Consensus 176 ~~~~G~~~Eal~~A~~~~Lp-vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r 254 (276)
++++|.+||++++|++++|| +++|++||+|++++++......+++.+++++|||++++|||||++++.++++++
T Consensus 155 ~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~----- 229 (616)
T 3mos_A 155 ELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA----- 229 (616)
T ss_dssp GGGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBCTTTTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC-----
T ss_pred ccccCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCCcccccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc-----
Confidence 99999999999999999995 889999999999988777666678999999999999999999999999988543
Q ss_pred ccCCCEEEEEEEecCCCCCC
Q 023827 255 GEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 255 ~~~~P~lIe~~t~R~~g~~~ 274 (276)
.++|+||+++|+|.+||+.
T Consensus 230 -~~~P~lI~v~T~kg~G~~~ 248 (616)
T 3mos_A 230 -KHQPTAIIAKTFKGRGITG 248 (616)
T ss_dssp -CSSCEEEEEECCTTTTSTT
T ss_pred -CCCCEEEEEEEeccccccc
Confidence 4799999999999999974
No 13
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.96 E-value=2.1e-29 Score=250.59 Aligned_cols=215 Identities=19% Similarity=0.160 Sum_probs=167.4
Q ss_pred HHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhccCC---------CcEEE-c-cCCc---HHHHHHcCC-CHHHHH
Q 023827 47 TLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKN---------DDFVV-P-QYRE---PGVLLWRGF-SMQEFA 111 (276)
Q Consensus 47 ~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~~---------~D~~~-~-~yR~---~~~~~~~G~-~~~~~l 111 (276)
.+|.+--.+......|+++...+.. |...+.....|+. .|.++ + .|-. .+++...|+ .+.+.|
T Consensus 12 ~iR~~~~~~v~~a~~GH~g~~ls~a--~~~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~~~~~l 89 (673)
T 1r9j_A 12 CIRCLAADIVQGGKSGHPGTPMGMA--PMSAVLWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQYALLHMAGYNLTMDDL 89 (673)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHTH--HHHHHHHHTTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSCCHHHH
T ss_pred HHHHHHHHHHHHcCCCCcchhHHHH--HHHHHHHHHhhCCCCCCCCCCCCCeEEEccccHHHHHHHHHHHcCCCCCHHHH
Confidence 3454433344444577765332222 3333333334442 25544 4 2444 244556788 667778
Q ss_pred HHhhcCCCCCCCCCCCccccCCC-CCCccccccccccccchhhhHHHHhhhcC----------CCceEEEEECCCcCCcc
Q 023827 112 NQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGGTSEG 180 (276)
Q Consensus 112 ~~~~~~~~~~~~G~~~~~h~~~~-~~~~~~~~g~lG~~l~~A~G~A~a~k~~~----------~~~~vv~~~GDG~~~~G 180 (276)
.+|+.. |+..++|+... .+++...+|+||+++|.|+|+|+|.|+.+ .+++|||++|||++++|
T Consensus 90 ~~~r~~------~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG 163 (673)
T 1r9j_A 90 KGFRQD------GSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEG 163 (673)
T ss_dssp HTTTST------TCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSH
T ss_pred HhhccC------CCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhccc
Confidence 888764 67788998764 46888899999999999999999998764 58899999999999999
Q ss_pred hHHHHHHHHHHCCC-CEEEEEEeCCccccccccCccCCcchhhhHhhcCceEE-EEcC-CCHHHHHHHHHHHHHHhHccC
Q 023827 181 DFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSI-RVDG-NDALAIYSAVHAAREMAIGEG 257 (276)
Q Consensus 181 ~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-~vdg-~d~~~v~~a~~~a~~~~r~~~ 257 (276)
.+||++++|++++| |+|+||+||+|++++++.... ..++.+++++|||+++ +||| +|++++++|+++|.+ ..+
T Consensus 164 ~~~Eal~~A~~~~L~~li~i~d~N~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~---~~~ 239 (673)
T 1r9j_A 164 VCQEALSLAGHLALEKLIVIYDSNYISIDGSTSLSF-TEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKA---TKG 239 (673)
T ss_dssp HHHHHHHHHHHHTCTTEEEEEEECSBCSSSBGGGTC-CCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCS
T ss_pred HHHHHHHHHHHhCCCcEEEEEECCCCccccchhhcc-CHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHH---cCC
Confidence 99999999999999 599999999999998887765 6889999999999999 9999 999999999998875 357
Q ss_pred CCEEEEEEEecCCCCC
Q 023827 258 RPILIEVKCLSFSIFL 273 (276)
Q Consensus 258 ~P~lIe~~t~R~~g~~ 273 (276)
+|++|+++|+|..||+
T Consensus 240 ~P~lI~~~T~kg~G~~ 255 (673)
T 1r9j_A 240 KPKMIVQTTTIGFGSS 255 (673)
T ss_dssp SCEEEEEECCTTTTST
T ss_pred CCEEEEEecccccccc
Confidence 9999999999999997
No 14
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=99.96 E-value=1.8e-29 Score=248.89 Aligned_cols=215 Identities=20% Similarity=0.170 Sum_probs=166.3
Q ss_pred HHHhhHHHHHHHHHhcCcccccccCChhHHHHHHHHhccC---------CCcEEEcc--CCc---HHHHHHcCC-CHHHH
Q 023827 46 VTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQ--YRE---PGVLLWRGF-SMQEF 110 (276)
Q Consensus 46 ~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~---------~~D~~~~~--yR~---~~~~~~~G~-~~~~~ 110 (276)
..+|.+--.+......|+++ ++.|.--+.+++...|+ +.|.++.+ |-. .+++...|+ ...+.
T Consensus 11 ~~iR~~~i~~v~~a~~GH~g---~~lg~~ei~~~L~~~~~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~~~~~ 87 (632)
T 3l84_A 11 NTLRFLSADMVQKANSGHPG---APLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLED 87 (632)
T ss_dssp HHHHHHHHHHHHHHTCSCCH---HHHHHHHHHHHHTTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHHTCSCCHHH
T ss_pred HHHHHHHHHHHHhcCCCCCC---cChhHHHHHHHHHHHhCcCCCCCCCCCCCEEEEcCCcccHHHHHHHHHhCCCCCHHH
Confidence 34454433333333456543 23333333344444564 35766653 444 345566787 56666
Q ss_pred HHHhhcCCCCCCCCCCCccccCCCCCCccccccccccccchhhhHHHHhhhcCC-------CceEEEEECCCcCCcchHH
Q 023827 111 ANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK-------DACAVTYFGDGGTSEGDFH 183 (276)
Q Consensus 111 l~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~A~G~A~a~k~~~~-------~~~vv~~~GDG~~~~G~~~ 183 (276)
|.+|+.. |+..++|+....+++..++|+||+++|.|+|+|+|.++.+. +++|||++|||++++|.+|
T Consensus 88 l~~~r~~------~s~~~ghp~~~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~ 161 (632)
T 3l84_A 88 LKNFRQL------HSKTPGHPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISY 161 (632)
T ss_dssp HTTTTCT------TCSSCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHH
T ss_pred HHHHhcC------CCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHH
Confidence 7777753 56667888775578888899999999999999999997653 8999999999999999999
Q ss_pred HHHHHHHHCCCC-EEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEE
Q 023827 184 AALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILI 262 (276)
Q Consensus 184 Eal~~A~~~~Lp-vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lI 262 (276)
|++++|++++|| +|+|++||+|++++++... ..+++.+++++|||++++|||||++++.+++++|.+ .++|+||
T Consensus 162 Eal~~A~~~~L~~livi~nnN~~~i~~~~~~~-~~~d~~~~~~a~G~~~~~vdGhd~~~l~~al~~A~~----~~~P~lI 236 (632)
T 3l84_A 162 EACSLAGLHKLDNFILIYDSNNISIEGDVGLA-FNENVKMRFEAQGFEVLSINGHDYEEINKALEQAKK----STKPCLI 236 (632)
T ss_dssp HHHHHHHHTTCTTEEEEEEECSEETTEEGGGT-CCCCHHHHHHHTTCEEEEEETTCHHHHHHHHHHHHT----CSSCEEE
T ss_pred HHHHHHHHcCCCcEEEEEECCCcccccchhhh-cChhHHHHHHHcCCeEEEEeeCCHHHHHHHHHHHHh----CCCCEEE
Confidence 999999999995 9999999999998887654 357899999999999999999999999998888764 6799999
Q ss_pred EEEEecCCCCCC
Q 023827 263 EVKCLSFSIFLS 274 (276)
Q Consensus 263 e~~t~R~~g~~~ 274 (276)
+++|+|..|++.
T Consensus 237 ~v~T~kG~G~~~ 248 (632)
T 3l84_A 237 IAKTTIAKGAGE 248 (632)
T ss_dssp EEECCTTTTCGG
T ss_pred EEeeEeeecCCC
Confidence 999999999974
No 15
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.96 E-value=4.5e-29 Score=248.39 Aligned_cols=228 Identities=19% Similarity=0.152 Sum_probs=173.9
Q ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccccccCChhHHHHHHHH-hccC---------CCcEEE-c-cCCc--
Q 023827 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASA-AAIK---------NDDFVV-P-QYRE-- 96 (276)
Q Consensus 31 ~~~~~~~l~~ly~~m~~~R~~d~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~-~al~---------~~D~~~-~-~yR~-- 96 (276)
+.++.++|.++ ...+|.+--.+......|+++. +.|.--+.+++- ..++ +.|.++ + .|-.
T Consensus 9 ~~l~~~~l~~~---a~~iR~~~~~~v~~a~~GH~g~---~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~ 82 (675)
T 1itz_A 9 KAATGELLEKS---VNTIRFLAIDAVEKANSGHPGL---PMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCML 82 (675)
T ss_dssp -CCCHHHHHHH---HHHHHHHHHHHHHHHTCSCCHH---HHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHH
T ss_pred CCCCHHHHHHH---HHHHHHHHHHHHHHcCCCccCc---cHhHHHHHHHHHHHHhcCCcCCCCCCCCCeEEEcCcchHHH
Confidence 47899988864 3344655444444445666542 333222233332 1233 236544 3 2444
Q ss_pred -HHHHHHcCC--CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccccccccccchhhhHHHHhhhcC---------
Q 023827 97 -PGVLLWRGF--SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDR--------- 163 (276)
Q Consensus 97 -~~~~~~~G~--~~~~~l~~~~~~~~~~~~G~~~~~h~~~~-~~~~~~~~g~lG~~l~~A~G~A~a~k~~~--------- 163 (276)
.+++...|+ .+.+.|..|+.. |+..++|+... .+++...+|+||+++|.|+|+|+|.|+.+
T Consensus 83 lYa~l~l~G~~~~~~~~l~~~r~~------~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~ 156 (675)
T 1itz_A 83 QYALLHLAGYDSVKEEDLKQFRQW------GSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSE 156 (675)
T ss_dssp HHHHHHHHTCTTCCHHHHTTTTST------TCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBC
T ss_pred HHHHHHHcCCCCCCHHHHHhcccC------CCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhcccccccccC
Confidence 345556787 566667777753 56668898754 46788889999999999999999998765
Q ss_pred -CCceEEEEECCCcCCcchHHHHHHHHHHCCC-CEEEEEEeCCccccccccCccCCcchhhhHhhcCceEE-EEcCC-CH
Q 023827 164 -KDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSI-RVDGN-DA 239 (276)
Q Consensus 164 -~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-~vdg~-d~ 239 (276)
++++|||++|||++++|.+||++++|++++| |+|+|++||+|++++++.... ..++.+++++|||+++ +|||| |+
T Consensus 157 ~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~ 235 (675)
T 1itz_A 157 IVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAF-TEDVSTRFEALGWHTIWVKNGNTGY 235 (675)
T ss_dssp CCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTTCH
T ss_pred CCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCCCChhhhc-ChhHHHHHHhCCCEEEEEecCCCCH
Confidence 6899999999999999999999999999999 899999999999988877654 6889999999999999 99999 99
Q ss_pred HHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 240 LAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 240 ~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
+++.+++++|.+ ..++|+||+++|+|..||++
T Consensus 236 ~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~ 267 (675)
T 1itz_A 236 DDIRAAIKEAKA---VTDKPTLIKVTTTIGFGSPN 267 (675)
T ss_dssp HHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTT
T ss_pred HHHHHHHHHHHH---CCCCeEEEEEeeecccCccc
Confidence 999999988875 25799999999999999985
No 16
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=99.96 E-value=5.4e-29 Score=246.83 Aligned_cols=178 Identities=24% Similarity=0.238 Sum_probs=145.0
Q ss_pred CcEEEcc--CCc---HHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccccccccccchhhhHHHHh
Q 023827 87 DDFVVPQ--YRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYAL 159 (276)
Q Consensus 87 ~D~~~~~--yR~---~~~~~~~G~-~~~~~l~~~~~~~~~~~~G~~~~~h~~~~-~~~~~~~~g~lG~~l~~A~G~A~a~ 159 (276)
.|.++.+ |-. .+++...|+ .+.+.|.+|+.. |+..++|+... .+++..++|+||+++|.|+|+|+|.
T Consensus 59 rDrfvls~GH~s~~lYa~l~l~G~~~~~~~l~~~r~~------~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~ 132 (663)
T 3kom_A 59 RDRFVLSNGHGSMLLYSLLHLTGYDLSIEDIKNFRQL------HSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALGE 132 (663)
T ss_dssp SCEEEECSSSCHHHHHHHHHHHTCSCCHHHHTTTTST------TCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHH
T ss_pred CCeEEEeCCcccHHHHHHHHHhCCCCCHHHHHhhccC------CCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHhH
Confidence 5765543 555 234556787 666778878764 66678888754 4688889999999999999999999
Q ss_pred hhcCC----------CceEEEEECCCcCCcchHHHHHHHHHHCCCC-EEEEEEeCCccccccccCccCCcchhhhHhhcC
Q 023827 160 KMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (276)
Q Consensus 160 k~~~~----------~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lp-vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (276)
|+.+. +++|+|++|||++++|.+||++++|++++|| +|+|++||+|++++++.... .+++.+++++||
T Consensus 133 ~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~~i~~~~~~~~-~~d~~~~~~a~G 211 (663)
T 3kom_A 133 KLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNISIDGDTKGWF-SDNTPERFRAYG 211 (663)
T ss_dssp HHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC-----CGGGTC-CCCHHHHHHHTT
T ss_pred HhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCcccccchhhhc-chhHHHHHHHCC
Confidence 97643 7899999999999999999999999999995 99999999999998876543 578999999999
Q ss_pred ceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 229 VRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 229 ~~~~-~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
|+++ +|||||++++.+++++|.+ ..++|+||+|+|+|..||+.
T Consensus 212 ~~~~~~vdG~d~~~l~~al~~A~~---~~~~P~lI~~~T~kg~G~~~ 255 (663)
T 3kom_A 212 WHVIENVDGHDFVAIEKAINEAHS---QQQKPTLICCKTVIGFGSPE 255 (663)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHH---CSSSCEEEEEECCTTTTCTT
T ss_pred CeEEEEEcCCCHHHHHHHHHHHHh---cCCCCEEEEEecccccccCC
Confidence 9999 9999999999999888764 15799999999999999975
No 17
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=99.96 E-value=1.1e-28 Score=245.85 Aligned_cols=177 Identities=23% Similarity=0.210 Sum_probs=150.2
Q ss_pred CcEEEcc--CCc---HHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccccccccccchhhhHHHHhh
Q 023827 87 DDFVVPQ--YRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 160 (276)
Q Consensus 87 ~D~~~~~--yR~---~~~~~~~G~-~~~~~l~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~A~G~A~a~k 160 (276)
.|.++.. |-. .+++...|+ .+.+.|..|+.. |+.+++|+....+++...+|+||+++|.|+|+|+|.+
T Consensus 60 rDr~v~s~GH~~~~lYa~~~l~G~~~~~~~l~~~r~~------g~~~~ghp~~~~~g~~~~~G~lG~gl~~AvG~AlA~~ 133 (680)
T 1gpu_A 60 RDRFVLSNGHAVALLYSMLHLTGYDLSIEDLKQFRQL------GSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQA 133 (680)
T ss_dssp CCEEEESSGGGHHHHHHHHHHTTCSCCHHHHTTTTCT------TCSCCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHH
T ss_pred CCEEEEecchHHHHHHHHHHHhCCCCCHHHHHhhccc------CCCCCCCCCccCCCeeeccccccchHHHHHHHHHHHH
Confidence 4655443 444 345566787 556677777753 5667889887567888999999999999999999998
Q ss_pred hcC----------CCceEEEEECCCcCCcchHHHHHHHHHHCCCC-EEEEEEeCCccccccccCccCCcchhhhHhhcCc
Q 023827 161 MDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (276)
Q Consensus 161 ~~~----------~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lp-vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (276)
+.+ .+++|||++|||++++|.+||++++|++++|| +|+||+||+|++++++.... ..++.+++++|||
T Consensus 134 ~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~ 212 (680)
T 1gpu_A 134 NLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISF-DEDVAKRYEAYGW 212 (680)
T ss_dssp HHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHHTC
T ss_pred HhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCcEEEEEECCCceEeccccccc-CccHHHHHHhcCC
Confidence 754 37899999999999999999999999999995 99999999999998876554 5789999999999
Q ss_pred eEE-EEcCC-CHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCC
Q 023827 230 RSI-RVDGN-DALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFL 273 (276)
Q Consensus 230 ~~~-~vdg~-d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~ 273 (276)
+++ +|||| |++++++++++|.+ ..++|+||+++|+|..||+
T Consensus 213 ~~~~~vdG~~d~~~l~~al~~A~~---~~~~P~lI~~~T~kg~G~~ 255 (680)
T 1gpu_A 213 EVLYVENGNEDLAGIAKAIAQAKL---SKDKPTLIKMTTTIGYGSL 255 (680)
T ss_dssp EEEEESCTTTCHHHHHHHHHHHHH---CTTSCEEEEEECCTTTTST
T ss_pred eEEEEecCCCCHHHHHHHHHHHHH---CCCCCEEEEEEeecccccc
Confidence 999 99999 99999999998875 2579999999999999997
No 18
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=99.96 E-value=8.5e-29 Score=245.60 Aligned_cols=175 Identities=23% Similarity=0.201 Sum_probs=148.7
Q ss_pred cEEEcc--CCc---HHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccccccccccchhhhHHHHhh
Q 023827 88 DFVVPQ--YRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALK 160 (276)
Q Consensus 88 D~~~~~--yR~---~~~~~~~G~-~~~~~l~~~~~~~~~~~~G~~~~~h~~~~-~~~~~~~~g~lG~~l~~A~G~A~a~k 160 (276)
|.++.. |-. .+++...|+ .+.+.|..++.. |+..++|+... .+++...+|+||+++|.|+|+|+|.+
T Consensus 62 Dr~vls~GH~~~~lYa~l~l~G~~~~~~~l~~~r~~------~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~ 135 (651)
T 2e6k_A 62 DRFVLSAGHGSMLLYAVLHLTGYDLPLEELKSFRQW------GSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAER 135 (651)
T ss_dssp CEEEESSGGGHHHHHHHHHHTTCSCCHHHHTTTTST------TCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHH
T ss_pred CeEEEeCcchhHHHHHHHHHhCCCCCHHHHHHhhcc------CCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHH
Confidence 655432 444 345556787 566677777753 55567888754 36788899999999999999999998
Q ss_pred hcC----------CCceEEEEECCCcCCcchHHHHHHHHHHCCCC-EEEEEEeCCccccccccCccCCcchhhhHhhcCc
Q 023827 161 MDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (276)
Q Consensus 161 ~~~----------~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lp-vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (276)
+.+ .+++|||++|||++++|.+||++++|++++|| +|+||+||+|++++++.... ..++.+++++|||
T Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~ 214 (651)
T 2e6k_A 136 KLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNRISIDGPTDLAF-TEDVLARYRAYGW 214 (651)
T ss_dssp HHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECCEETTEEGGGTC-CSCHHHHHHHTTC
T ss_pred hhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCCccccccccccc-CccHHHHHHhCCC
Confidence 765 68899999999999999999999999999995 99999999999998877665 6789999999999
Q ss_pred eEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCC
Q 023827 230 RSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFL 273 (276)
Q Consensus 230 ~~~-~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~ 273 (276)
+++ +|||||++++++++++|.+ .++|+||+++|+|..||+
T Consensus 215 ~~~~~vdG~d~~~l~~al~~a~~----~~~P~lI~~~t~kg~G~~ 255 (651)
T 2e6k_A 215 QTLRVEDVNDLEALRKAIKLAKL----DERPTLIAVRSHIGFGSP 255 (651)
T ss_dssp EEEEESCTTCHHHHHHHHHHHHH----SSSCEEEEEECCTTTTST
T ss_pred eEEEEeCCCCHHHHHHHHHHHHH----CCCCEEEEEEeEeccccc
Confidence 999 9999999999999998875 579999999999999997
No 19
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=99.96 E-value=9.1e-29 Score=246.44 Aligned_cols=177 Identities=24% Similarity=0.240 Sum_probs=141.9
Q ss_pred CcEEEcc--CCc---HHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccccccccccchhhhHHHHh
Q 023827 87 DDFVVPQ--YRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYAL 159 (276)
Q Consensus 87 ~D~~~~~--yR~---~~~~~~~G~-~~~~~l~~~~~~~~~~~~G~~~~~h~~~~-~~~~~~~~g~lG~~l~~A~G~A~a~ 159 (276)
.|.++.+ |-. .+++...|+ ...+.|.+|+.. |+..++|+... .+++..++|+||+++|.|+|+|+|.
T Consensus 98 rDrfvls~GH~s~~lYa~l~l~G~~~~~~~l~~~r~~------~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~ 171 (711)
T 3uk1_A 98 RDRFVLSNGHGSMLLYSLLHLTGYDLPIEELKNFRQL------HSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGE 171 (711)
T ss_dssp CCEEEECSGGGHHHHHHHHHHHTCSCCHHHHHTTTST------TCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHH
T ss_pred CCeEEEeCCcccHHHHHHHHHhCCCCCHHHHHhhccc------cCCCCCCCCCCCCCCcccCccchhhHHHHHHHHHHHH
Confidence 4665543 444 233556787 667778888764 56678888654 4688889999999999999999999
Q ss_pred hhcCC----------CceEEEEECCCcCCcchHHHHHHHHHHCCCC-EEEEEEeCCccccccccCccCCcchhhhHhhcC
Q 023827 160 KMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (276)
Q Consensus 160 k~~~~----------~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lp-vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (276)
|+.+. +++|||++|||++++|.+||++++|++++|| +|+|++||+|++++++.... .+++.+++++||
T Consensus 172 ~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~-~~d~~~~~~a~G 250 (711)
T 3uk1_A 172 ALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISIDGDVVNWF-HDDTPKRFEAYG 250 (711)
T ss_dssp HHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTT
T ss_pred HhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCCcccccchhhhc-CCCHHHHHHHcC
Confidence 97643 7899999999999999999999999999996 99999999999988876653 578999999999
Q ss_pred ceEEE-EcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 229 VRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 229 ~~~~~-vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
|++++ |||+|++++.+++++|.+ .++|+||+|+|+|..||+.
T Consensus 251 ~~~~~~vdG~d~~~l~~Al~~A~~----~~~P~lI~v~T~kG~G~~~ 293 (711)
T 3uk1_A 251 WNVIPNVNGHDVDAIDAAIAKAKR----SDKPSLICCKTRIGNGAAT 293 (711)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHTT----CSSCEEEEEEC--------
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHh----CCCCEEEEEccccccCCCC
Confidence 99998 999999999999887753 6899999999999999964
No 20
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=99.96 E-value=3.9e-28 Score=241.40 Aligned_cols=179 Identities=25% Similarity=0.253 Sum_probs=149.3
Q ss_pred CCcEEEcc--CCcH---HHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccccccccccchhhhHHHH
Q 023827 86 NDDFVVPQ--YREP---GVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYA 158 (276)
Q Consensus 86 ~~D~~~~~--yR~~---~~~~~~G~-~~~~~l~~~~~~~~~~~~G~~~~~h~~~~-~~~~~~~~g~lG~~l~~A~G~A~a 158 (276)
+.|.++.+ |-.. +++...|+ .+.+.|..|+.. |+..++|+... .+++..++|+||+++|.|+|+|+|
T Consensus 82 ~rDrfvls~GH~~~~lYa~l~l~G~~~~~~~l~~~rq~------gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA 155 (690)
T 3m49_A 82 NRDRFVLSAGHGSMLLYSLLHLSGYDVTMDDLKNFRQW------GSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMA 155 (690)
T ss_dssp TSCEEEESSGGGHHHHHHHHHHTTSSCCHHHHTTTTCT------TCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHH
T ss_pred CCCeEEECCccHHHHHHHHHHHHCCCCCHHHHHhhccC------CCCCCCCCCCCCCCccccCCccccccHHHHHHHHHH
Confidence 35765543 4442 45556787 566667777753 66778898763 578888899999999999999999
Q ss_pred hhhcCC----------CceEEEEECCCcCCcchHHHHHHHHHHCCC-CEEEEEEeCCccccccccCccCCcchhhhHhhc
Q 023827 159 LKMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (276)
Q Consensus 159 ~k~~~~----------~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (276)
.|+.+. +++|||++|||++++|.+||++++|++++| ++|+|++||+|++++++... ..+++.+++++|
T Consensus 156 ~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~-~~~d~~~~~~a~ 234 (690)
T 3m49_A 156 ERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRS-FSESVEDRYKAY 234 (690)
T ss_dssp HHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBGGGT-CCCCHHHHHHHH
T ss_pred HHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCeecccchhhc-cchhHHHHHHHc
Confidence 987542 789999999999999999999999999999 59999999999999887654 457899999999
Q ss_pred CceEEEE-cCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 228 GVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 228 G~~~~~v-dg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
||++++| ||+|++++.+++++|.+ ..++|+||+|+|+|..|++.
T Consensus 235 G~~~~~v~DG~d~~~l~~Al~~a~~---~~~~P~lI~v~T~kG~G~~~ 279 (690)
T 3m49_A 235 GWQVIRVEDGNDIEAIAKAIEEAKA---DEKRPTLIEVRTTIGFGSPN 279 (690)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTT
T ss_pred CCcEEEEecCCCHHHHHHHHHHHHh---cCCCCEEEEEEeecccccCc
Confidence 9999999 99999999998887764 25799999999999999864
No 21
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=99.96 E-value=5.1e-28 Score=240.66 Aligned_cols=178 Identities=24% Similarity=0.255 Sum_probs=148.7
Q ss_pred CcEEEcc--CCc---HHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccccccccccchhhhHHHHh
Q 023827 87 DDFVVPQ--YRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYAL 159 (276)
Q Consensus 87 ~D~~~~~--yR~---~~~~~~~G~-~~~~~l~~~~~~~~~~~~G~~~~~h~~~~-~~~~~~~~g~lG~~l~~A~G~A~a~ 159 (276)
.|.++.. |-. .+++...|+ .+.+.|..|+.. |+..++|+... .+++...+|+||+++|.|+|+|+|.
T Consensus 57 rDr~v~s~GH~~~~lYa~~~l~G~~~~~~~l~~~r~~------~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~ 130 (669)
T 2r8o_A 57 RDRFVLSNGHGSMLIYSLLHLTGYDLPMEELKNFRQL------HSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAE 130 (669)
T ss_dssp CCEEEESSGGGHHHHHHHHHHHTCSCCHHHHTTTTST------TCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHH
T ss_pred CCeEEEeCccHHHHHHHHHHHcCCCCCHHHHHHhhcC------CCCCCCCCCccCCCCcccccccccchHHHHHHHHHHH
Confidence 3554433 444 244556687 556677777753 55567888754 4688889999999999999999999
Q ss_pred hhcC----------CCceEEEEECCCcCCcchHHHHHHHHHHCCCC-EEEEEEeCCccccccccCccCCcchhhhHhhcC
Q 023827 160 KMDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (276)
Q Consensus 160 k~~~----------~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lp-vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (276)
++.+ .+++|||++|||++++|.+||++++|++++|| +|+|++||+|++++++.... ..++.+++++||
T Consensus 131 ~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G 209 (669)
T 2r8o_A 131 KTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYG 209 (669)
T ss_dssp HHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTT
T ss_pred HHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECCCcEecccccccc-CccHHHHHHHCC
Confidence 8654 37899999999999999999999999999995 99999999999998876544 578999999999
Q ss_pred ceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 229 VRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 229 ~~~~-~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
|+++ +|||+|++++++++++|.+ ..++|+||+++|+|..||+.
T Consensus 210 ~~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~ 253 (669)
T 2r8o_A 210 WHVIRDIDGHDAASIKRAVEEARA---VTDKPSLLMCKTIIGFGSPN 253 (669)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTT
T ss_pred CeEEeEECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeEeccCcCC
Confidence 9999 9999999999999998875 25799999999999999984
No 22
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=99.94 E-value=2.8e-26 Score=232.82 Aligned_cols=194 Identities=16% Similarity=0.158 Sum_probs=158.8
Q ss_pred HHHHHHHHhccC------CCcEEEcc-CCc---HHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCC-CCC-cccc
Q 023827 74 EAINIASAAAIK------NDDFVVPQ-YRE---PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN-KHN-YFTV 141 (276)
Q Consensus 74 Ea~~~~~~~al~------~~D~~~~~-yR~---~~~~~~~G~~~~~~l~~~~~~~~~~~~G~~~~~h~~~~-~~~-~~~~ 141 (276)
|...+.....++ +.|+|+.. |-. .++++..|+..++.|..|+... .+.++++|+... .++ ....
T Consensus 115 el~~~l~~~~~~~~~~~~~~D~V~~~GH~sp~~Ya~~~l~Gr~~~e~l~~fRq~~----~~~gl~~~p~~~~~p~~~~~~ 190 (886)
T 2qtc_A 115 TIYDVCFNHFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEV----HGNGLSSYPHPKLMPEFWQFP 190 (886)
T ss_dssp HHHHHHHHHTCCCCCSSSCCCEEECCGGGHHHHHHHHHHTTSSCHHHHTTBTCCT----TSSCBCSSCCTTTSTTTCCCC
T ss_pred HHHHHHHHHhcCCCCCCCCCCEEEEcchhHHHHHHHHHHhCCCCHHHHHhccCCC----CCCCCCCCCCcccCCCccccc
Confidence 444333344466 46877764 444 3456678988778888887532 245778887654 244 6778
Q ss_pred ccccccccchhhhHHHHhhh-------cCCCceEEEEECCCcCCcchHHHHHHHHHHCCC-CEEEEEEeCCccccccccC
Q 023827 142 SSTIATQLPHAVGAAYALKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISD 213 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~-------~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~ 213 (276)
+|++|.+++.|+|+|++.|+ ++.+++|||++|||++++|.+|||+++|++++| |+||||+||++++++++..
T Consensus 191 tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~~~v~~ 270 (886)
T 2qtc_A 191 TVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTG 270 (886)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCT
T ss_pred ccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcccCCCccc
Confidence 99999999999999999998 778899999999999999999999999999999 7999999999999988775
Q ss_pred c-cCCcchhhhHhhcCceEEEE----------------------------------------------------------
Q 023827 214 Q-FRSDGAVVKGRAYGVRSIRV---------------------------------------------------------- 234 (276)
Q Consensus 214 ~-~~~~~~~~~a~a~G~~~~~v---------------------------------------------------------- 234 (276)
. ....++.++++++||++++|
T Consensus 271 ~~~~~~~l~~~~~~~G~~~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~ 350 (886)
T 2qtc_A 271 NGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVAD 350 (886)
T ss_dssp TSCHHHHHHHHHHHTTCEEEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTT
T ss_pred cccccHHHHHHHHhCCCCEEEEecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhh
Confidence 3 23467999999999999998
Q ss_pred -----------cCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 235 -----------DGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 235 -----------dg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
||||+.++++|+++|.++ .++|++|+++|+|..||++
T Consensus 351 ~~d~~i~~l~~dGhD~~~l~~a~~~A~~~---~~~PtlI~~~T~KG~G~~~ 398 (886)
T 2qtc_A 351 WTDEQIWALNRGGHDPKKIYAAFKKAQET---KGKATVILAHTIKGYGMGD 398 (886)
T ss_dssp CCHHHHHTCCBGGGCHHHHHHHHHHHHHC---CSSCEEEEEECCTTTTCTT
T ss_pred cChhhHhhcccCCCCHHHHHHHHHHHHHc---CCCCEEEEEeeeeccccch
Confidence 699999999999998863 3589999999999999974
No 23
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=99.82 E-value=3.4e-20 Score=186.01 Aligned_cols=141 Identities=19% Similarity=0.204 Sum_probs=123.7
Q ss_pred CCccccCCCCCCccccccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcch---HHHHHHHHHHCCC-CEEEEEE
Q 023827 126 QMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD---FHAALNFSAVTEA-PVIFICR 201 (276)
Q Consensus 126 ~~~~h~~~~~~~~~~~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~---~~Eal~~A~~~~L-pvi~vv~ 201 (276)
++++|+....+|+...+|+||++++.|+|+|+. +++.+|+|++|||+.++|+ .||+.+++..+++ +++.|++
T Consensus 158 g~pgHp~~~tpGve~~tG~LGqGls~AvG~A~~----~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D 233 (845)
T 3ahc_A 158 GIPSHFAPETPGSIHEGGELGYALSHAYGAVMN----NPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILH 233 (845)
T ss_dssp SBCSSCCTTSTTCSCCCSSTTCHHHHHHHHHTT----CTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEE
T ss_pred CCCCCCCCCCCCeecCCCCccchHhHHhhhhhc----CCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEE
Confidence 389999766689999999999999999999964 4588999999999999999 9999999999999 9999999
Q ss_pred eCCccccccccCc-cCCcchhhhHhhcCceEE-EEcC-C--CHHHHHHHHHHHHH-----------HhHc--cCCC--EE
Q 023827 202 NNGWAISTPISDQ-FRSDGAVVKGRAYGVRSI-RVDG-N--DALAIYSAVHAARE-----------MAIG--EGRP--IL 261 (276)
Q Consensus 202 nN~~~~~~~~~~~-~~~~~~~~~a~a~G~~~~-~vdg-~--d~~~v~~a~~~a~~-----------~~r~--~~~P--~l 261 (276)
+|+++++.++... .+.+++.+++++|||.++ .||| + |++++.+++.+|++ .+|+ .++| ++
T Consensus 234 ~N~~~i~g~t~l~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~ 313 (845)
T 3ahc_A 234 LNGYKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPM 313 (845)
T ss_dssp ECSBSSSSBCHHHHSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEE
T ss_pred CCCCcCCCCccccccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeE
Confidence 9999999988633 456789999999999999 9999 9 99999998876653 2443 3689 99
Q ss_pred EEEEEecCC
Q 023827 262 IEVKCLSFS 270 (276)
Q Consensus 262 Ie~~t~R~~ 270 (276)
|.++|.+..
T Consensus 314 Ii~rT~kG~ 322 (845)
T 3ahc_A 314 LIFRTPKGW 322 (845)
T ss_dssp EEEECCTTT
T ss_pred EEEECcccC
Confidence 999999988
No 24
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=99.75 E-value=2.2e-18 Score=169.16 Aligned_cols=121 Identities=18% Similarity=0.209 Sum_probs=101.0
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeC-CccccccccCc-----
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISDQ----- 214 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~~~----- 214 (276)
..|+||+++|.|+|+++|.+ +++|+|++|||+|+++ +++|++|+++++|+++||.|| +|++.......
T Consensus 411 ~~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~~~~~ 484 (590)
T 1v5e_A 411 LFATMGIAIPGGLGAKNTYP----DRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKNL 484 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSSCCSC
T ss_pred CCCcccChHHHHHHHHHhCC----CCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHhcCCC
Confidence 36899999999999999965 7899999999999886 477999999999977777555 78876432211
Q ss_pred ----cCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 215 ----FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 215 ----~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
....|+.+++++||+++++|+ +++++.+++++|++.+|. ++|+|||++|+|..
T Consensus 485 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~gp~liev~~~~~~ 541 (590)
T 1v5e_A 485 FGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAANKA-GHTVVIDCKITQDR 541 (590)
T ss_dssp CCCCCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHHHHHT-TCCEEEEEECCSCC
T ss_pred ccccCCCCCHHHHHHHcCCEEEEEC--CHHHHHHHHHHHHHhcCC-CCCEEEEEEecccc
Confidence 235789999999999999997 688999999999876554 79999999999876
No 25
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.74 E-value=1.2e-18 Score=171.43 Aligned_cols=118 Identities=19% Similarity=0.246 Sum_probs=94.7
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-cccc---------c-c
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIS---------T-P 210 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~---------~-~ 210 (276)
.|+||+++|.|+|++++.+ +++|+|++|||+|+++ +++|++|+++++|+++||.||+ |++. . .
T Consensus 419 ~g~~G~~l~~A~Gaala~~----~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~~~~~~~~~~~~~~ 492 (603)
T 4feg_A 419 FATMGVGIPGAIAAKLNYP----ERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQNDF 492 (603)
T ss_dssp SCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCSSCC
T ss_pred cccccchhHHHhhHHHhCC----CCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHHHHHHHHHhcCCCc
Confidence 5899999999999999865 7899999999999886 4669999999999888887775 7752 1 1
Q ss_pred ccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 023827 211 ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSF 269 (276)
Q Consensus 211 ~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 269 (276)
........|+++++++||+++++|+ +++++.+++++|++ .+.+||+|||++|+|.
T Consensus 493 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~--~~~~gP~lIev~~~~~ 547 (603)
T 4feg_A 493 IGVEFNDIDFSKIADGVHMQAFRVN--KIEQLPDVFEQAKA--IAQHEPVLIDAVITGD 547 (603)
T ss_dssp CSSBCCCCCHHHHHHHTTCEEEEEC--BGGGHHHHHHHHHH--HTTTSCEEEEEECCCC
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHH--hcCCCcEEEEEEeCCC
Confidence 1222345789999999999999998 45677777777762 1468999999999554
No 26
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=99.73 E-value=2.9e-18 Score=169.04 Aligned_cols=121 Identities=20% Similarity=0.172 Sum_probs=99.4
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeC-Cccccccc---------
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~--------- 211 (276)
+|+||+++|.|+|+|+|.+ +++|||++|||+|+++ +++|++|+++++|+++||.|| +|++....
T Consensus 441 ~G~~G~~l~~AiGaala~~----~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~ 514 (616)
T 2pan_A 441 AGPLGWTIPAALGVCAADP----KRNVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDYC 514 (616)
T ss_dssp TCCTTCHHHHHHHHHHHCT----TCEEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHGGGGTCCCS
T ss_pred cccccchHHHHHHHHHhCC----CCcEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCcc
Confidence 6899999999999999975 7899999999999886 467999999999987666655 57763210
Q ss_pred -----cC--ccC----CcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 212 -----SD--QFR----SDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 212 -----~~--~~~----~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
.. ..+ ..|+.+++++||+++++|+ +++++.+++++|++++|+.++|+|||++|+|..
T Consensus 515 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~lIev~~~~~~ 582 (616)
T 2pan_A 515 VQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQYRVPVVVEVILERVT 582 (616)
T ss_dssp CBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEEC--SGGGHHHHHHHHHHHHHHHCSCEEEEEEBCSCC
T ss_pred ccccccccccccCCCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecccc
Confidence 11 111 2689999999999999997 577999999999987766789999999999876
No 27
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=99.71 E-value=2.8e-18 Score=167.39 Aligned_cols=124 Identities=16% Similarity=0.176 Sum_probs=99.1
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeC-Ccccccccc------C
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS------D 213 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~------~ 213 (276)
..|+||+++|.|+|+|+|.+.++.+++|+|++|||+|+++ +++|++|+++++|+++||.|| +|++..... .
T Consensus 411 ~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 488 (563)
T 2vk8_A 411 LWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLT--VQEISTMIRWGLKPYLFVLNNDGYTIQKLIHGPKAQYN 488 (563)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGG
T ss_pred chhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhcc--HHHHHHHHHcCCCcEEEEEECCcchhhhhhhCCCCCcc
Confidence 3689999999999999999977778999999999999874 566999999999877777555 587743211 1
Q ss_pred ccCCcchhhhHhhcCce---EEEEcCCCHHHHHHHHH-HHHHHhHccCCCEEEEEEEecCCC
Q 023827 214 QFRSDGAVVKGRAYGVR---SIRVDGNDALAIYSAVH-AAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 214 ~~~~~~~~~~a~a~G~~---~~~vdg~d~~~v~~a~~-~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
.....|+.+++++||++ +++|+ +++++.++++ ++++ ..++|+|||++|++...
T Consensus 489 ~~~~~d~~~~a~a~G~~~~~~~~v~--~~~el~~al~~~a~~---~~~~p~liev~~~~~~~ 545 (563)
T 2vk8_A 489 EIQGWDHLSLLPTFGAKDYETHRVA--TTGEWDKLTQDKSFN---DNSKIRMIEVMLPVFDA 545 (563)
T ss_dssp CCCCCCGGGHHHHTTCSSEEEEEEC--BHHHHHHHHTCTTTT---SCSSEEEEEEECCTTCC
T ss_pred cCCCCCHHHHHHHhCCCCCcEEEec--CHHHHHHHHHHHHHh---CCCCcEEEEEEeCcccc
Confidence 12456899999999999 99998 5788888887 6553 23479999999997653
No 28
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=99.71 E-value=4.6e-18 Score=166.13 Aligned_cols=118 Identities=19% Similarity=0.268 Sum_probs=96.6
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeC-Ccccccccc-------
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS------- 212 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~------- 212 (276)
..|+||+++|.|+|+++|.+ +++|+|++|||+|+++ +++|++|.++++|+++||.|| +|++.....
T Consensus 418 g~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 491 (566)
T 1ozh_A 418 GQQTMGVALPWAIGAWLVNP----ERKVVSVSGDGGFLQS--SMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQRL 491 (566)
T ss_dssp TTCCTTCHHHHHHHHHHHST----TSEEEEEEEHHHHHHH--TTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSSC
T ss_pred CcccccchHHHHHHHHHhCC----CCCEEEEEcChHHhcc--HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCC
Confidence 36899999999999999975 7899999999999874 456999999999987777666 577643211
Q ss_pred --CccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
......|+.+++++||+++++|+ +++++.++++++++ .++|+|||++|+|..
T Consensus 492 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~~~ 545 (566)
T 1ozh_A 492 SGVEFGPMDFKAYAESFGAKGFAVE--SAEALEPTLRAAMD----VDGPAVVAIPVDYRD 545 (566)
T ss_dssp CSCBCCCCCHHHHHHTTTSEEEECC--SGGGHHHHHHHHHH----SSSCEEEEEEBCCTT
T ss_pred ccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCCCc
Confidence 22334789999999999999997 56788888888875 579999999999864
No 29
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=99.71 E-value=4.7e-18 Score=164.60 Aligned_cols=115 Identities=23% Similarity=0.331 Sum_probs=94.0
Q ss_pred cccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeC-Cccccccc------c---
Q 023827 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI------S--- 212 (276)
Q Consensus 143 g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~------~--- 212 (276)
|+||+++|.|+|+++|.+ +++|+|++|||+|+++ +++|++|.++++|+++||.|| +|++.... .
T Consensus 401 g~~G~~l~~A~G~a~a~~----~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~ 474 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLAEP----ERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVP 474 (528)
T ss_dssp CCTTSHHHHHHHHHHHCT----TSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCCSCC
T ss_pred ccccchHHHHHHHHHhCC----CCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchHhHHHHHHhcCCCcc
Confidence 899999999999999975 6889999999999987 578999999999988887666 58764321 0
Q ss_pred -CccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 023827 213 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSF 269 (276)
Q Consensus 213 -~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 269 (276)
......|+.+++++||+++++|+ +.+++.++++++++ .++|+|||++|+|.
T Consensus 475 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~~ 526 (528)
T 1q6z_A 475 GLDVPGIDFRALAKGYGVQALKAD--NLEQLKGSLQEALS----AKGPVLIEVSTVSP 526 (528)
T ss_dssp SCBCCCCCHHHHHHHHTCEEEEES--SHHHHHHHHHHHHT----CSSCEEEEEEBCC-
T ss_pred cCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHH----CCCcEEEEEEecCC
Confidence 11245789999999999999998 45687777776653 67999999999874
No 30
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=99.71 E-value=8.6e-18 Score=164.01 Aligned_cols=119 Identities=19% Similarity=0.250 Sum_probs=96.7
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeC-Ccccccccc-------C
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------D 213 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~-------~ 213 (276)
.|+||+++|.|+|+++|.| +++++|+|++|||+|+++ +++|++|.++++|+++||.|| +|++..... .
T Consensus 418 ~g~~G~~l~~AiGaa~a~~--~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~ 493 (563)
T 2uz1_A 418 LGSMGVGFGTALGAQVADL--EAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGPNR 493 (563)
T ss_dssp TCCTTTHHHHHHHHHHHHH--HHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCTTC
T ss_pred CccccChHHHHHHHHHHhh--CCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCc
Confidence 5899999999999999985 347899999999999986 357999999999986666555 687654211 1
Q ss_pred ----ccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 214 ----QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 214 ----~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
.....|+.+++++||+++++|+ +++++.+++++|++ .++|+|||++|++..
T Consensus 494 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~~~ 548 (563)
T 2uz1_A 494 VTGTRLENGSYHGVAAAFGADGYHVD--SVESFSAALAQALA----HNRPACINVAVALDP 548 (563)
T ss_dssp CCSCBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----SSSCEEEEEECCSCC
T ss_pred ccCCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHH----CCCCEEEEEEecccc
Confidence 1134789999999999999996 68899999888875 579999999999643
No 31
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=99.70 E-value=1e-17 Score=164.44 Aligned_cols=121 Identities=21% Similarity=0.264 Sum_probs=98.4
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeC-Ccccccccc--------
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 212 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~-------- 212 (276)
.|+||+++|.|+|+++|.+ +++|+|++|||+|+++ +++|++|.++++|+++||.|| +|++.....
T Consensus 423 ~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~ 496 (589)
T 2pgn_A 423 EGILGCGFPMALGAQLAEP----NSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNESYGANWTLMNHQFGQNN 496 (589)
T ss_dssp TCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHHSSCC
T ss_pred cchhhhHHHHHHHHHHhCC----CCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCCcccchHHHHhhcCCCc
Confidence 5899999999999999975 7899999999999885 478999999999977776655 477643221
Q ss_pred -CccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 023827 213 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIFLS 274 (276)
Q Consensus 213 -~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~~~ 274 (276)
......|+.+++++||+++++|+. ++++.++++++++ .++|+|||++|+|..+..+
T Consensus 497 ~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~----~~gp~liev~~~~~~~~~~ 553 (589)
T 2pgn_A 497 WTEFMNPDWVGIAKAFGAYGESVRE--TGDIAGALQRAID----SGKPALIEIPVSKTQGLAS 553 (589)
T ss_dssp SCBCCCCCHHHHHHHHTCEEEECTT--TCCHHHHHHHHHH----HCSCEEEEEECCSSSSTTT
T ss_pred cccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHHh----CCCCEEEEEEecCCCCcCc
Confidence 223357899999999999999984 5688888888875 4799999999998776543
No 32
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=99.70 E-value=8.6e-18 Score=164.39 Aligned_cols=116 Identities=27% Similarity=0.326 Sum_probs=95.1
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeC-Cccccccc--------
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI-------- 211 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~-------- 211 (276)
..|+||+++|.|+|+++|.+ +++|+|++|||+|+++ +++|++|.++++|+++||.|| +|++....
T Consensus 434 g~g~mG~~l~~AiGaa~a~~----~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 507 (573)
T 2iht_A 434 GCSSFGYGIPAAIGAQMARP----DQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRS 507 (573)
T ss_dssp SSCCTTCHHHHHHHHHHHST----TSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHSSC
T ss_pred CCcccccHHHHHHHHHHhCC----CCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCcchhhHHHHHHhcCCC
Confidence 36899999999999999975 7899999999999886 467999999999976666555 58765431
Q ss_pred -c--CccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 023827 212 -S--DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLS 268 (276)
Q Consensus 212 -~--~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 268 (276)
. ......|+.+++++||+++++|+ +.+++.++++++++ .++|+|||++|+|
T Consensus 508 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~ 561 (573)
T 2iht_A 508 HDPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRKGAE----LGRPFLIEVPVNY 561 (573)
T ss_dssp CGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHHHHT----SSSCEEEEEEBCC
T ss_pred cCccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEECCC
Confidence 1 22334789999999999999986 67888888887764 5799999999998
No 33
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=99.69 E-value=2.9e-17 Score=163.66 Aligned_cols=118 Identities=19% Similarity=0.223 Sum_probs=95.8
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeC-Cccccccc---------
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~--------- 211 (276)
.|+||+++|.|+|+++|.+ +++|||++|||+|+++ +++|++|+++++|+++||.|| +|++....
T Consensus 512 ~G~mG~~lpaAiGaalA~p----~~~Vv~i~GDGsf~~~--~~eL~ta~~~~l~v~ivV~NN~~~g~~~~~~~~~~~~~~ 585 (677)
T 1t9b_A 512 LGTMGYGLPAAIGAQVAKP----ESLVIDIDGDASFNMT--LTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRY 585 (677)
T ss_dssp SCCTTCHHHHHHHHHHHCT----TSEEEEEEEHHHHHHH--GGGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTTCC
T ss_pred cchhhchHHHHHHHHHhCC----CCeEEEEEeehHHhcc--HHHHHHHHHhCCCeEEEEEeCCCchhhhhhhhhhcCCCc
Confidence 5899999999999999964 7899999999999874 355999999999876666555 58764311
Q ss_pred -cCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 212 -SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 212 -~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
.......|+.+++++||+++++|+ +++++.++++++++ .++|+|||++|+|...
T Consensus 586 ~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~~~~ 640 (677)
T 1t9b_A 586 SHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFVS----TKGPVLLEVEVDKKVP 640 (677)
T ss_dssp CSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----CSSCEEEEEEBCSSCC
T ss_pred ccCcCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHH----CCCcEEEEEEecCCcc
Confidence 011235789999999999999996 68899998888875 5799999999998765
No 34
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=99.69 E-value=3.6e-17 Score=160.52 Aligned_cols=119 Identities=23% Similarity=0.240 Sum_probs=96.5
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeC-Cccccccc---------
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~--------- 211 (276)
.|+||+++|.|+|+++|.+ +++|||++|||+|+++ +++|++|+++++|+++||.|| +|++....
T Consensus 425 ~G~~G~~l~~AiGaala~~----~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~ 498 (590)
T 1ybh_A 425 LGAMGFGLPAAIGASVANP----DAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKANR 498 (590)
T ss_dssp SCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHHHHHHHHHHSTTCC
T ss_pred cccccchHHHHHHHHHhCC----CCcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCcchHHHHHHHHhcCCcc
Confidence 5899999999999999975 7899999999999875 457999999999976666555 67764311
Q ss_pred -cCc--c------CCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 023827 212 -SDQ--F------RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIF 272 (276)
Q Consensus 212 -~~~--~------~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~ 272 (276)
... . ...|+.+++++||+++++|+ +++++.+++++|++ .++|+|||++|+|....
T Consensus 499 ~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~~~~~ 562 (590)
T 1ybh_A 499 AHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTMLD----TPGPYLLDVICPHQEHV 562 (590)
T ss_dssp CSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHHHH----SSSCEEEEEECCTTCCC
T ss_pred ccccccccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCccc
Confidence 010 1 14689999999999999997 68899888888875 47999999999997754
No 35
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=99.69 E-value=2.4e-17 Score=161.11 Aligned_cols=121 Identities=19% Similarity=0.199 Sum_probs=95.9
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEE-eCCcccccccc------C
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR-NNGWAISTPIS------D 213 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~-nN~~~~~~~~~------~ 213 (276)
..|+||+++|.|+|+++|.+ +++|+|++|||+|+++ +++|++|.++++|+++||. ||+|++..... .
T Consensus 423 ~~g~mG~~l~~A~Gaala~~----~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 496 (570)
T 2vbf_A 423 LWGSIGYTFPAALGSQIADK----ESRHLLFIGDGSLQLT--VQELGLSIREKLNPICFIINNDGYTVEREIHGPTQSYN 496 (570)
T ss_dssp TTCCTTTHHHHHHHHHHHCT----TSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGG
T ss_pred cchhhhhhHHHHHHHHHhCC----CCcEEEEEcchhhhcC--HHHHHHHHHcCCCCEEEEEECCchHHHHHHhccCCCcc
Confidence 46899999999999999975 7899999999999884 4569999999998766655 55787654221 1
Q ss_pred ccCCcchhhhHhhcCce-----EEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 023827 214 QFRSDGAVVKGRAYGVR-----SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIF 272 (276)
Q Consensus 214 ~~~~~~~~~~a~a~G~~-----~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~ 272 (276)
.....|+.+++++||++ +++|+ +++++.++++++. ++.++|+|||++|+|....
T Consensus 497 ~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~---~~~~~p~liev~~~~~~~~ 555 (570)
T 2vbf_A 497 DIPMWNYSKLPETFGATEDRVVSKIVR--TENEFVSVMKEAQ---ADVNRMYWIELVLEKEDAP 555 (570)
T ss_dssp CCCCCCGGGHHHHTTCCTTTEEEEEEC--BHHHHHHHHHHHH---HCTTSEEEEEEECCTTCCC
T ss_pred CCCCCCHHHHHHHcCCCcCCcceEEec--CHHHHHHHHHHHH---hcCCCcEEEEEEcCccccc
Confidence 12457899999999998 88886 5788888887742 2467899999999986543
No 36
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=99.68 E-value=2.2e-17 Score=161.21 Aligned_cols=120 Identities=21% Similarity=0.236 Sum_probs=97.2
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEE-EeCCccccccccC----cc
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPISD----QF 215 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv-~nN~~~~~~~~~~----~~ 215 (276)
..|+||+++|.|+|+++|.+ +++|+|++|||+|+++ +++|++|+++++|+++|| +||+|++...... ..
T Consensus 407 ~~g~mG~~l~~A~G~ala~~----~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 480 (566)
T 2vbi_A 407 QWGHIGWSVPSAFGNAMGSQ----DRQHVVMVGDGSFQLT--AQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPYNYI 480 (566)
T ss_dssp TTCCTTTHHHHHHHHHHTCT----TSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCC
T ss_pred cccchhhHHHHHHHHHHhCC----CCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCcceEEEeeccCCccCC
Confidence 36899999999999999865 7899999999999874 456999999999866555 5557887654321 23
Q ss_pred CCcchhhhHhhcCc-----eEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 216 RSDGAVVKGRAYGV-----RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 216 ~~~~~~~~a~a~G~-----~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
...|+.+++++||+ ++++|+ +++++.++++++++. .++|+|||++|+|...
T Consensus 481 ~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~~~---~~gp~liev~~~~~~~ 536 (566)
T 2vbi_A 481 KNWDYAGLMEVFNAGEGHGLGLKAT--TPKELTEAIARAKAN---TRGPTLIECQIDRTDC 536 (566)
T ss_dssp CCCCTTTHHHHHHTTTCCCEEEEEC--SHHHHHHHHHHHHHC---CSSCEEEEEECCTTCC
T ss_pred CCCCHHHHHHHcCCCCCCccEEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCcccC
Confidence 45689999999999 999997 678998888888752 2799999999998654
No 37
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=99.68 E-value=4e-17 Score=158.89 Aligned_cols=120 Identities=22% Similarity=0.261 Sum_probs=95.4
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeC-Cccccccc--------
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI-------- 211 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~-------- 211 (276)
..|+||+++|.|+|+++|.+ +++|+|++|||+|+++ +++|++|.++++|+++||.|| +|++....
T Consensus 404 ~~g~mG~~l~~AiGaala~~----~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~~~~~~~ 477 (549)
T 3eya_A 404 NHGSMANAMPQALGAQATEP----ERQVVAMCGDGGFSML--MGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAGGYLT 477 (549)
T ss_dssp TTCCTTCHHHHHHHHHHHST----TSCEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCCCC-----------
T ss_pred CCchhhhHHHHHHHHHHhCC----CCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHhcCCCC
Confidence 35899999999999999975 7899999999999875 466999999999876666555 57653211
Q ss_pred -cCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 023827 212 -SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIF 272 (276)
Q Consensus 212 -~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~ 272 (276)
.......|+.+++++||+++++|+ +++++.++++++++ .++|+|||++|.|....
T Consensus 478 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~~~~~ 533 (549)
T 3eya_A 478 DGTELHDTNFARIAEACGITGIRVE--KASEVDEALQRAFS----IDGPVLVDVVVAKEELA 533 (549)
T ss_dssp -CCBCCCCCHHHHHHHTTSEEEEEC--SGGGHHHHHHHHHH----SSSCEEEEEEBCCCCSC
T ss_pred cCCcCCCCCHHHHHHHcCCcEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecccccc
Confidence 112245789999999999999996 56788888888775 57999999999987654
No 38
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=99.67 E-value=2.3e-17 Score=160.51 Aligned_cols=119 Identities=21% Similarity=0.206 Sum_probs=95.2
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeC-Cccccccc----c--C
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI----S--D 213 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~----~--~ 213 (276)
..|+||+++|.|+|+++|.+ +++|+|++|||+|+++ +++|.+|.++++|+++||.|| +|++.... . .
T Consensus 406 ~~g~mG~~l~~A~G~a~a~~----~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 479 (552)
T 1ovm_A 406 LWGSIGYTLAAAFGAQTACP----NRRVIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYN 479 (552)
T ss_dssp TTCCTTHHHHHHHHHHHHCT----TSCEEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGG
T ss_pred hhHhhhhHHHHHHHHHHhCC----CCcEEEEECchHHHhH--HHHHHHHHHhCCCCEEEEEECCCCeEEEeeccCCCCcc
Confidence 36899999999999999965 7899999999999874 466999999999876666555 58775321 1 1
Q ss_pred ccCCcchhhhHhhcCc----eEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 214 QFRSDGAVVKGRAYGV----RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 214 ~~~~~~~~~~a~a~G~----~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
.....|+.+++++||+ ++++|+ +++++.+++++++ +.++|+|||++|++...
T Consensus 480 ~~~~~d~~~~a~a~G~~~~~~~~~v~--~~~~l~~al~~a~----~~~gp~liev~~~~~~~ 535 (552)
T 1ovm_A 480 DIALWNWTHIPQALSLDPQSECWRVS--EAEQLADVLEKVA----HHERLSLIEVMLPKADI 535 (552)
T ss_dssp CCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHHHHHHHT----TCSSEEEEEEECCTTCC
T ss_pred cCCCCCHHHHHHHhCCCcCCCEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEcCcccC
Confidence 2245789999999999 999997 5778888877765 36799999999998643
No 39
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=99.67 E-value=1.6e-16 Score=155.18 Aligned_cols=119 Identities=18% Similarity=0.121 Sum_probs=96.8
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-c-cccccc------c
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-W-AISTPI------S 212 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~-~~~~~~------~ 212 (276)
..|+||+++|.|+|++++ + +++|+|++|||+|++. +++|.+|.++++|+++||.||+ | ++.... .
T Consensus 424 ~~g~~G~~l~~AiGaala-~----~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 496 (568)
T 2c31_A 424 TWGVMGIGMGYCVAAAAV-T----GKPVIAVEGDSAFGFS--GMELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVIS 496 (568)
T ss_dssp TTTCSSCHHHHHHHHHHH-H----CSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEESSBSSCSCCCCSBTTBCC
T ss_pred CCccccccHHHHHHHHhC-C----CCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHhhcCCcc
Confidence 468999999999999998 4 7899999999999874 3569999999999988888886 3 332111 0
Q ss_pred C-ccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 023827 213 D-QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIF 272 (276)
Q Consensus 213 ~-~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~ 272 (276)
. .....|+.+++++||+++++|+ +++++.++++++++ .++|+|||++|+|....
T Consensus 497 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~~~~ 551 (568)
T 2c31_A 497 CTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAVA----SGKPCLINAMIDPDAGV 551 (568)
T ss_dssp TTBCCCCCHHHHHHTTTCEEEEES--SHHHHHHHHHHHHH----HTSCEEEEEEBCTTSSC
T ss_pred cCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeccccCC
Confidence 0 0345799999999999999996 68899999988875 47899999999987654
No 40
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=99.66 E-value=2.2e-16 Score=154.05 Aligned_cols=119 Identities=15% Similarity=0.055 Sum_probs=96.1
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-c-cccccc-------
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-W-AISTPI------- 211 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~-~~~~~~------- 211 (276)
..|+||+++|.|+|++++ + +++|+|++|||+|++. + ++|.+|+++++|+++||.||+ | ++....
T Consensus 419 ~~g~~G~~l~~AiGaa~a-~----~~~vv~i~GDGsf~~~-~-~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 491 (564)
T 2q28_A 419 TWGVMGIGMGYAIGASVT-S----GSPVVAIEGDSAFGFS-G-MEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAP 491 (564)
T ss_dssp TTTCTTCHHHHHHHHHHH-H----CSCEEEEEEHHHHHTT-G-GGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSSCCC
T ss_pred CCCcccchHHHHHHHhhc-C----CCcEEEEEcchHhhcc-H-HHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhccCCc
Confidence 468999999999999998 4 7899999999999874 3 559999999999988888776 3 442111
Q ss_pred cC--ccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 023827 212 SD--QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIF 272 (276)
Q Consensus 212 ~~--~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~ 272 (276)
.. ..+..|+.+++++||+++++|+ +++++.++++++++ .++|+|||++|+|....
T Consensus 492 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~~~~ 548 (564)
T 2q28_A 492 SPTDLLHHARYDKLMDAFRGVGYNVT--TTDELRHALTTGIQ----SRKPTIINVVIDPAAGT 548 (564)
T ss_dssp CTTBCCTTCCGGGGGGGGTCEEEEEC--SHHHHHHHHHHHHH----HTSCEEEEEEBCTTSSC
T ss_pred cccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeccccCC
Confidence 00 1224789999999999999996 68899999988875 47899999999987654
No 41
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=99.66 E-value=3.9e-17 Score=159.47 Aligned_cols=118 Identities=18% Similarity=0.157 Sum_probs=95.5
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeC-Ccccccccc-----Ccc
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-----DQF 215 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~-----~~~ 215 (276)
.|+||+++|.|+|+|+|.+ +++|+|++|||+|++ .+++|++|.++++|+++||.|| +|++..... ...
T Consensus 421 ~g~mG~~l~~A~G~ala~~----~~~vv~i~GDG~~~~--~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~ 494 (565)
T 2nxw_A 421 YAGMGFGVPAGIGAQCVSG----GKRILTVVGDGAFQM--TGWELGNCRRLGIDPIVILFNNASWEMLRTFQPESAFNDL 494 (565)
T ss_dssp TCCTTCHHHHHHHHHHHTT----TCCEEEEEEHHHHHH--HGGGGGGHHHHTCCCEEEEEECSBCHHHHHHCTTCGGGBC
T ss_pred cccccccchHHHHHHHhCC----CCcEEEEEechHHHh--hHHHHHHHHHhCCCCEEEEEECCCCcEEeeecccCCCCcC
Confidence 5899999999999999975 789999999999985 4567999999999876666555 587643211 123
Q ss_pred CCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCE-EEEEEEecCCC
Q 023827 216 RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPI-LIEVKCLSFSI 271 (276)
Q Consensus 216 ~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~-lIe~~t~R~~g 271 (276)
...|+.+++++||+++++|+ +++++.++++++++ .++|. |||++|+|...
T Consensus 495 ~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~~liev~~~~~~~ 545 (565)
T 2nxw_A 495 DDWRFADMAAGMGGDGVRVR--TRAELKAALDKAFA----TRGRFQLIEAMIPRGVL 545 (565)
T ss_dssp CCCCHHHHTGGGTSEEEEEC--BHHHHHHHHHHHHH----CCSSCEEEEEECCTTCC
T ss_pred CCCCHHHHHHHcCCCEEEeC--CHHHHHHHHHHHHh----cCCCeEEEEEEcccccC
Confidence 45789999999999999997 67899888888875 46888 99999998654
No 42
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=99.65 E-value=1.1e-16 Score=156.29 Aligned_cols=121 Identities=18% Similarity=0.175 Sum_probs=97.6
Q ss_pred cccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEE-EeCCccccccccC----cc
Q 023827 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPISD----QF 215 (276)
Q Consensus 141 ~~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv-~nN~~~~~~~~~~----~~ 215 (276)
..|+||+++|.|+|+|+|.+ +++|+|++|||+|+++ +++|++|.++++|+++|| +||+|++...... ..
T Consensus 411 ~~g~~G~~l~~A~G~ala~~----~~~vv~i~GDGs~~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 484 (568)
T 2wvg_A 411 QWGHIGWSVPAAFGYAVGAP----ERRNILMVGDGSFQLT--AQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNI 484 (568)
T ss_dssp TTCCTTTHHHHHHHHHHHCT----TSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCC
T ss_pred CcchhhhHHHHHHHHHHhCC----CCcEEEEEcChhHhcc--HHHHHHHHHcCCCcEEEEEECCcceEeeeeccCCCcCC
Confidence 36899999999999999975 7899999999999874 455999999999876555 5567887644321 23
Q ss_pred CCcchhhhHhhcCc---------eEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 023827 216 RSDGAVVKGRAYGV---------RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSIF 272 (276)
Q Consensus 216 ~~~~~~~~a~a~G~---------~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g~ 272 (276)
...|+.+++++||+ ++++|+ +.+++.++++++++. .++|+|||++|+|....
T Consensus 485 ~~~d~~~~a~a~G~~~~~~~~~~~~~~v~--~~~el~~al~~a~~~---~~gp~liev~~~~~~~~ 545 (568)
T 2wvg_A 485 KNWDYAGLMEVFNGNGGYDSGAGKGLKAK--TGGELAEAIKVALAN---TDGPTLIECFIGREDCT 545 (568)
T ss_dssp CCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHHHC---CSSCEEEEEECCTTCCC
T ss_pred CCCCHHHHHHHhCCCcccccCCcceEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEcCccccC
Confidence 45689999999999 899996 678998888888752 27999999999987543
No 43
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=99.60 E-value=1.6e-16 Score=156.23 Aligned_cols=115 Identities=17% Similarity=0.057 Sum_probs=91.2
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEE-eCCcccccccc--------
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR-NNGWAISTPIS-------- 212 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~-nN~~~~~~~~~-------- 212 (276)
.++||+++|.|+|+++| + +++|+|++|||+|+++ + ++|++|+++++|+++||. ||+|++.....
T Consensus 454 ~~~ig~~l~~AiGaala-~----~~~vv~i~GDGsf~~~-~-~eL~ta~~~~lp~~ivv~NN~~~~i~~~~~~~q~~~~~ 526 (604)
T 2x7j_A 454 ANGIDGVVSSAMGVCEG-T----KAPVTLVIGDLSFYHD-L-NGLLAAKKLGIPLTVILVNNDGGGIFSFLPQASEKTHF 526 (604)
T ss_dssp TCCSSSHHHHHHHHHHH-H----TSCEEEEEEHHHHHHT-G-GGGHHHHHHCCCEEEEEEECSSCGGGGGSGGGSCHHHH
T ss_pred cCCcCcHHHHHHHHHhc-C----CCcEEEEEccHHHHhH-H-HHHHHhhhcCCCeEEEEEeCCCCcccccCCCCccchhh
Confidence 46899999999999999 3 6889999999999885 3 459999999999876665 45787643211
Q ss_pred ----CccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 023827 213 ----DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSF 269 (276)
Q Consensus 213 ----~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 269 (276)
......|+.+++++||+++++|+ +++++.+++++++ +.++|+|||++|+|.
T Consensus 527 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~liev~~~~~ 581 (604)
T 2x7j_A 527 EDLFGTPTGLDFKHAAALYGGTYSCPA--SWDEFKTAYAPQA----DKPGLHLIEIKTDRQ 581 (604)
T ss_dssp HHHTTCCCCCCTHHHHHHTTCEEECCS--SHHHHHHHCCCCC----SSCCEEEEEEECCHH
T ss_pred HhhccCCCCCCHHHHHHHcCCeEEecC--CHHHHHHHHHHHH----hCCCCEEEEEECCcc
Confidence 11134689999999999999997 6778877777665 357999999999874
No 44
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=99.59 E-value=6.8e-16 Score=150.46 Aligned_cols=115 Identities=17% Similarity=0.113 Sum_probs=87.4
Q ss_pred ccccccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCC-ccccccc-------c-
Q 023827 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-------S- 212 (276)
Q Consensus 142 ~g~lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~-------~- 212 (276)
.|++|. +|.|+|+++| + +++|+|++|||+|++. + ++|++|.++++|+++||.||+ |++.... .
T Consensus 416 ~g~~G~-l~~A~Gaa~a-~----~~~vv~i~GDGsf~~~-~-~eL~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~ 487 (556)
T 3hww_A 416 SGIDGL-LSTAAGVQRA-S----GKPTLAIVGDLSALYD-L-NALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERER 487 (556)
T ss_dssp CCSSSH-HHHHHHHHHH-H----CCCEEEEEEHHHHHHT-G-GGHHHHTTCSSCEEEEEEESCC----------------
T ss_pred cccccH-HHHHHHHHhc-C----CCcEEEEEccHHhhhc-c-hhhHhhcccCCCcEEEEEECCCCCcccCCCCcchhHHH
Confidence 456666 9999999998 3 7899999999999765 3 449999999999988888776 4543211 1
Q ss_pred --CccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 023827 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFS 270 (276)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 270 (276)
......|+.+++++||+++++|+ +.+++.+++++++ +.++|+|||++|+|..
T Consensus 488 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~----~~~gp~liev~~~~~~ 541 (556)
T 3hww_A 488 FYLMPQNVHFEHAAAMFELKYHRPQ--NWQELETAFADAW----RTPTTTVIEMVVNDTD 541 (556)
T ss_dssp -CCCCCCCCSHHHHHHTTCEEECCS--SHHHHHHHHHHHT----TSSSEEEEEEECCSSH
T ss_pred hccCCCCCCHHHHHHHcCCcEEecC--CHHHHHHHHHHHH----hCCCCEEEEEECCccc
Confidence 11245789999999999999997 5678877777665 4689999999998753
No 45
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=99.55 E-value=1.8e-15 Score=148.02 Aligned_cols=113 Identities=16% Similarity=0.065 Sum_probs=79.0
Q ss_pred cccccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeC-Cccccccc---c------C-
Q 023827 145 IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI---S------D- 213 (276)
Q Consensus 145 lG~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~---~------~- 213 (276)
+|.++|.|+|+|++ +++|+|++|||+|++. .++|++|.++++|+++||.|| +|++.... . .
T Consensus 438 ~~g~l~~AiGaa~~------~~~vv~i~GDGsf~~~--~~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~~~ 509 (578)
T 3lq1_A 438 IDGVVSSALGASVV------FQPMFLLIGDLSFYHD--MNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESL 509 (578)
T ss_dssp SSSHHHHHHHHTTT------SSSEEEEEEHHHHHHT--GGGGHHHHHTTCCEEEEEECCC--------------------
T ss_pred cccHHHHHHHHhcC------CCCEEEEEchHHHHhh--HHHHHhhccCCCCeEEEEEECCcCccccccccccccchhhhh
Confidence 33468999998742 7899999999999865 345999999999998888777 46654311 0 0
Q ss_pred --ccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 023827 214 --QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSFSI 271 (276)
Q Consensus 214 --~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 271 (276)
.....|+.+++++||+++++|+ +.+++.++++++++ .++|+|||+.|+|...
T Consensus 510 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~~~~ 563 (578)
T 3lq1_A 510 FGTSTELDFRFAAAFYDADYHEAK--SVDELEEAIDKASY----HKGLDIIEVKTNRHEN 563 (578)
T ss_dssp -----CCCTHHHHHHTTCEEEECC--SHHHHHHHHHHHTT----SSSEEEEEEC------
T ss_pred ccCCCCCCHHHHHHHcCCceEecC--CHHHHHHHHHHHHh----CCCCEEEEEECCcccc
Confidence 1124689999999999999996 67888888877764 5799999999998654
No 46
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.08 E-value=2.9e-10 Score=119.46 Aligned_cols=99 Identities=13% Similarity=0.081 Sum_probs=76.6
Q ss_pred CceEEEEECCC-cCCcchHHHHHHHHHHCCCCEEEEEEeCCc-cccccccC----------------ccCCcchhhhHhh
Q 023827 165 DACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNGW-AISTPISD----------------QFRSDGAVVKGRA 226 (276)
Q Consensus 165 ~~~vv~~~GDG-~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~-~~~~~~~~----------------~~~~~~~~~~a~a 226 (276)
++.|||+.||| ++++|. . +|.+|.++++|+++||.||+. ++...+.. .....|+.++|++
T Consensus 953 ~~~Vv~i~GDG~~~~mg~-~-eL~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a 1030 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIGY-G-GLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMT 1030 (1231)
T ss_dssp CCEEEEEEEHHHHHTTTH-H-HHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHT
T ss_pred CCcEEEEeCcHHHHHcch-H-HHHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHH
Confidence 47899999999 888873 4 499999999999888888874 43221100 0123689999999
Q ss_pred cCceEEE-EcC-CCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 023827 227 YGVRSIR-VDG-NDALAIYSAVHAAREMAIGEGRPILIEVKCLSF 269 (276)
Q Consensus 227 ~G~~~~~-vdg-~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 269 (276)
||++++. ++- .|+.++.+++++|++ .+||+||++.+...
T Consensus 1031 ~G~~~va~~~v~~~~~~l~~al~eAl~----~~GP~lI~v~~~c~ 1071 (1231)
T 2c42_A 1031 YGYVYVATVSMGYSKQQFLKVLKEAES----FPGPSLVIAYATCI 1071 (1231)
T ss_dssp TSSSEEEEECTTTCHHHHHHHHHHHHH----SSSCEEEEEECCCG
T ss_pred CCCCEEEEEeccCCHHHHHHHHHHHHh----cCCCEEEEEeecCc
Confidence 9999985 434 489999999999986 47999999987654
No 47
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=93.37 E-value=0.54 Score=45.46 Aligned_cols=106 Identities=17% Similarity=0.147 Sum_probs=70.8
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.|.+. ++...++|..|=|..+. .-++..|..-++|+|+|.-+-......... .....|... ++.+--.
T Consensus 58 ~A~GyAr~t---g~p~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~~~~~-~~Q~~d~~~-~~~~tk~ 129 (589)
T 2pgn_A 58 MVNGYNYVK---DRSAAVGAWHCVGNLLL---HAAMQEARTGRIPAVHIGLNSDGRLAGRSE-AAQQVPWQS-FTPIARS 129 (589)
T ss_dssp HHHHHHHHH---TSCCEEEEEEGGGGGGC---HHHHHHHHHTTCCEEEEEEESCGGGTTCTT-CSSCCCGGG-GTTTSSE
T ss_pred HHHHHHHHH---CCCEEEEEecCchHHHH---HHHHHHHHhcCCCEEEEecCCcccccCCCC-cccccChhh-ccccEEE
Confidence 455655543 44568888889998874 345888899999999999776543221110 111234555 5655555
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVKC 266 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 266 (276)
..++. +++++.+.+++|+..+..++ ||+.|++-.
T Consensus 130 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 164 (589)
T 2pgn_A 130 TQRVE--RLDKVGEAIHEAFRVAEGHPAGPAYVDIPF 164 (589)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHTSSSCCEEEEEEET
T ss_pred EeecC--CHHHHHHHHHHHHHHHhcCCCccEEEEeCH
Confidence 55664 67788888999988887766 899998743
No 48
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=93.24 E-value=0.28 Score=47.48 Aligned_cols=105 Identities=21% Similarity=0.200 Sum_probs=71.2
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.|.+. ++-.+++|..|=|+++. .-++..|...++|+|+|.-+-....... ......|...+++.+--.
T Consensus 65 ~A~Gyar~t---g~p~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~g~--~~~Q~~d~~~~~~~~~k~ 136 (590)
T 1ybh_A 65 AAEGYARSS---GKPGICIATSGPGATNL---VSGLADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVEVTRSITKH 136 (590)
T ss_dssp HHHHHHHHH---SSCEEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTT--TCTTCCCHHHHHGGGSSE
T ss_pred HHHHHHHHH---CCCEEEEeccCchHHHH---HHHHHHHHhhCCCEEEEeCcCCccccCC--CcccccCHHHHHHHHhCe
Confidence 466666553 33456666667776663 3457888889999999987664432211 112234677778877666
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVK 265 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~ 265 (276)
..++. +++++.+++++|+..++.++ ||+.|++-
T Consensus 137 ~~~v~--~~~~i~~~l~~A~~~a~~~~~GPV~l~iP 170 (590)
T 1ybh_A 137 NYLVM--DVEDIPRIIEEAFFLATSGRPGPVLVDVP 170 (590)
T ss_dssp EEECC--CGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred EEecC--CHHHHHHHHHHHHHHHhhCCCceEEEEeC
Confidence 66664 67889999999998887664 89999874
No 49
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=93.22 E-value=0.33 Score=46.64 Aligned_cols=107 Identities=20% Similarity=0.150 Sum_probs=71.1
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCC-cchhhhHhhcCc
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS-DGAVVKGRAYGV 229 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~-~~~~~~a~a~G~ 229 (276)
+|.|.|.+. ++-..++|..|=|..+. .-++..|...++|+|+|.-+-........ .... .|..++++.+--
T Consensus 56 ~A~Gyar~t---g~p~v~~~TsGpG~~N~---~~~l~~A~~~~~Pll~itg~~~~~~~~~~--~~Q~~~d~~~~~~~~tk 127 (563)
T 2uz1_A 56 AAEGYARAG---AKLGVALVTAGGGFTNA---VTPIANAWLDRTPVLFLTGSGALRDDETN--TLQAGIDQVAMAAPITK 127 (563)
T ss_dssp HHHHHHHHH---TSCEEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTSC--CTTCCCCHHHHHGGGCS
T ss_pred HHHHHHHHh---CCCEEEEEccCccHHHH---HHHHHHHHhcCCCEEEEeCCCCcccCCch--hhhhhccHHHHhhhhhc
Confidence 466666543 33345555556666663 34577788889999999977654332111 1223 467778888776
Q ss_pred eEEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEEe
Q 023827 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVKCL 267 (276)
Q Consensus 230 ~~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t~ 267 (276)
...++. +++++.+.+++|+..+..++ ||+.|++-.+
T Consensus 128 ~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 128 WAHRVM--ATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp EEEECC--CGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred eEEEcC--CHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 677774 67788888888888887765 8999987543
No 50
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=93.19 E-value=0.28 Score=47.22 Aligned_cols=107 Identities=18% Similarity=0.161 Sum_probs=70.6
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.|.+. ++...++|..|=|..+ ..-++..|..-++|+|+|.-+-........ ......|..++++.+--.
T Consensus 63 ~A~Gyar~t---g~p~v~~~TsGpG~~N---~~~~v~~A~~~~~Pll~itg~~~~~~~~~~-~~~Q~~d~~~~~~~~~k~ 135 (573)
T 2iht_A 63 AADVLARIT---GRPQACWATLGPGMTN---LSTGIATSVLDRSPVIALAAQSESHDIFPN-DTHQCLDSVAIVAPMSKY 135 (573)
T ss_dssp HHHHHHHHH---CSCEEEEECTTHHHHH---HHHHHHHHHHHTCCEEEEEEESCGGGCCTT-TSTTCCCHHHHHGGGSSE
T ss_pred HHHHHHHHH---CCCEEEEEccCchHHH---HHHHHHHHHhhCCCEEEEcccCcccccCCc-CccccCCHHHHHHhHhhE
Confidence 455555543 3334455555666664 344677888889999999987654332210 112234677788877766
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVKC 266 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 266 (276)
..++. +++++.+.+++|+..+..++ ||+.|++-.
T Consensus 136 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 170 (573)
T 2iht_A 136 AVELQ--RPHEITDLVDSAVNAAMTEPVGPSFISLPV 170 (573)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHTBSSCCCEEEEEEH
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 66664 67788888999998887775 899998754
No 51
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=92.93 E-value=0.28 Score=47.18 Aligned_cols=107 Identities=15% Similarity=0.036 Sum_probs=69.7
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.|.+. ++...+++..|=|..+. .-++..|..-++|+|+|.-+-....... ......|...+++.+--.
T Consensus 63 ~A~Gyar~t---g~p~v~~~TsGpG~~N~---~~~l~~A~~~~vPll~itg~~~~~~~~~--~~~Q~~d~~~~~~~~tk~ 134 (566)
T 1ozh_A 63 MAAAVGRIT---GKAGVALVTSGPGCSNL---ITGMATANSEGDPVVALGGAVKRADKAK--QVHQSMDTVAMFSPVTKY 134 (566)
T ss_dssp HHHHHHHHH---SSCEEEEECSTHHHHTT---HHHHHHHHHHTCCEEEEEEECCTTTC--------CCCHHHHHGGGCSE
T ss_pred HHHHHHHHH---CCCEEEEEccChHHHHH---HHHHHHHHhcCCCEEEEeCCCccccCCC--CcccccCHHHHHHHHhhe
Confidence 455655543 33445555557777763 3457788888999999987765432211 112234677788887766
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEEe
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVKCL 267 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t~ 267 (276)
..++. +++++.+.+++|+..+..++ ||+.|++-.+
T Consensus 135 ~~~v~--~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 135 AIEVT--APDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 77774 67788888888888777764 8999987543
No 52
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=92.44 E-value=0.54 Score=45.16 Aligned_cols=108 Identities=18% Similarity=0.162 Sum_probs=68.8
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccc---cCcc---CCcchhhhH
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQF---RSDGAVVKG 224 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~---~~~~---~~~~~~~~a 224 (276)
+|.|.|.+. + ...+++..|=|+++ ..-++..|...++|+|+|.-+-........ .... ...|..+++
T Consensus 56 ~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~ 128 (568)
T 2wvg_A 56 SAEGYARAK---G-AAAAVVTYSVGALS---AFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMA 128 (568)
T ss_dssp HHHHHHHHH---S-CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHH
T ss_pred HHHHHHHhh---C-CeEEEEeCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHHHH
Confidence 455655542 3 44555666666665 345677888899999999987654321110 0100 113567778
Q ss_pred hhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEe
Q 023827 225 RAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCL 267 (276)
Q Consensus 225 ~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~ 267 (276)
+.+--...++. +++++...+++|+..+..++||+.|++-.+
T Consensus 129 ~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP~d 169 (568)
T 2wvg_A 129 KNITAAAEAIY--TPEEAPAKIDHVIKTALREKKPVYLEIACN 169 (568)
T ss_dssp TTSCSCEEEEC--SGGGHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred HhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEechh
Confidence 77766677775 566777777777777776779999988543
No 53
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=92.34 E-value=0.46 Score=45.60 Aligned_cols=107 Identities=21% Similarity=0.194 Sum_probs=66.0
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccc---cCcc---CCcchhhhH
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQF---RSDGAVVKG 224 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~---~~~~---~~~~~~~~a 224 (276)
+|.|.|.+. + ...+++..|=|..+ ..-++..|...++|+|+|+-+-........ .... ...|..+++
T Consensus 56 ~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~ 128 (566)
T 2vbi_A 56 SAEGYARSN---G-AAAAVVTFSVGAIS---AMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMA 128 (566)
T ss_dssp HHHHHHHHH---S-CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHH
T ss_pred HHHHHHhhc---C-CeEEEEeCCCCHHH---HHHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHHH
Confidence 455555442 3 34455555666665 334577788899999999987654321110 0100 113567788
Q ss_pred hhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 225 RAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 225 ~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
+.+--...++. +++++.+.+++|+..+..++||+.|++-.
T Consensus 129 ~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~GPV~l~iP~ 168 (566)
T 2vbi_A 129 RQVTCAAESIT--DAHSAPAKIDHVIRTALRERKPAYLDIAC 168 (566)
T ss_dssp HTTCSEEEEEC--SSSSHHHHHHHHHHHHHHHTCCEEEEEET
T ss_pred hhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEech
Confidence 88876777775 44456666667766666667999998854
No 54
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=92.20 E-value=0.44 Score=45.63 Aligned_cols=105 Identities=14% Similarity=-0.022 Sum_probs=68.5
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.|.+. ++-.+++|..|=|+++. .-++..|..-++|+|+|.-+-....... ......|..++++.+--.
T Consensus 56 ~A~GyAr~t---g~~~v~~~TsGpG~~N~---~~gi~~A~~~~vPvl~itg~~~~~~~~~--~~~Q~~d~~~~~~~~tk~ 127 (549)
T 3eya_A 56 AAGAEAQLS---GELAVCAGSCGPGNLHL---INGLFDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHPQELFRECSHY 127 (549)
T ss_dssp HHHHHHHHH---SSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEESCGGGTTS--CCTTCCCHHHHTSTTCSE
T ss_pred HHHHHHHHh---CCCEEEEeCCCCcHhhh---HHHHHHHHhhCCCEEEEeCCCchhhcCC--CCCCccCHHHHHhhhhhe
Confidence 455655543 33455666667777763 3468888899999999997654322111 111224566777776666
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVK 265 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~ 265 (276)
...+. +++++.+.+.+|+..+....||+.|++-
T Consensus 128 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 160 (549)
T 3eya_A 128 CELVS--SPEQIPQVLAIAMRKAVLNRGVSVVVLP 160 (549)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 66664 6667888888888777777899999874
No 55
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=91.63 E-value=0.4 Score=45.97 Aligned_cols=108 Identities=16% Similarity=0.205 Sum_probs=68.7
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.|.+. ++..+++|..|=|..+ ..-++..|..-++|+|+|.-+-...............|..++++.+--.
T Consensus 60 ~A~Gyar~t---g~pgv~~~TsGpG~~N---~~~gi~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~ 133 (564)
T 2q28_A 60 AAAASGFLT---QKPGICLTVSAPGFLN---GLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAKA 133 (564)
T ss_dssp HHHHHHHHH---SSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSSE
T ss_pred HHHHHHHHh---CCCEEEEEccCchHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCCCCCccccccHHHHHHHhhhe
Confidence 455666543 3334555555666664 3446778888899999999876543211001112224666777777666
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHc-cCCCEEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIG-EGRPILIEVKC 266 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~-~~~P~lIe~~t 266 (276)
..++. +++++.+.+++|+..+.. ..||+.|++-.
T Consensus 134 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 168 (564)
T 2q28_A 134 AFRVN--QPQDLGIALARAIRVSVSGRPGGVYLDLPA 168 (564)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred eeecC--CHHHHHHHHHHHHHHHhcCCCceEEEEcCH
Confidence 77764 666788888888887776 45899998743
No 56
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=91.56 E-value=0.42 Score=45.97 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=63.3
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCcccccccc---CccCCcc-hhhhHhh
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS---DQFRSDG-AVVKGRA 226 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~---~~~~~~~-~~~~a~a 226 (276)
+|.|.|.+. ++..+++|..|=|..+. .-++..|..-++|+|+|.-+-......... .+....| ..++++.
T Consensus 74 ~A~GyAr~t---gkp~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~ 147 (565)
T 2nxw_A 74 AADAAARYS---STLGVAAVTYGAGAFNM---VNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKE 147 (565)
T ss_dssp HHHHHHHHH---TSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTT
T ss_pred HHHHHHHHh---CCCeEEEECCCCCHHHH---HHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHh
Confidence 466666543 33345555557776653 345778888999999999774332211100 0011122 5567777
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 227 ~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
+--...++. +++++.+.+++|+..+....||+.|++-.
T Consensus 148 ~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 185 (565)
T 2nxw_A 148 ITVAQARLD--DPAKAPAEIARVLGAARAQSRPVYLEIPR 185 (565)
T ss_dssp SCSCEEECC--CTTTHHHHHHHHHHHHHHHTCCEEEEEEG
T ss_pred hheEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEECCh
Confidence 765666664 45556666666666665567999999863
No 57
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=91.48 E-value=0.57 Score=46.25 Aligned_cols=105 Identities=18% Similarity=0.188 Sum_probs=70.2
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.|.+. ++-.+++|..|=|+++. .-++..|..-++|+|+|.-+-....... ......|...+++.+--.
T Consensus 135 aAdGyAr~t---Gkpgvv~~TsGpG~~N~---~~gia~A~~d~vPllvItG~~~~~~~g~--~a~Q~~Dq~~i~~~~tk~ 206 (677)
T 1t9b_A 135 MAEGYARAS---GKPGVVLVTSGPGATNV---VTPMADAFADGIPMVVFTGQVPTSAIGT--DAFQEADVVGISRSCTKW 206 (677)
T ss_dssp HHHHHHHHH---SSCEEEEECSTHHHHTT---HHHHHHHHHHTCCEEEEEEECCTTTTTS--CCTTCCCHHHHTGGGSSE
T ss_pred HHHHHHHHH---CCCEEEEECCChHHHHH---HHHHHHHHHcCCCEEEEeCCCChhhcCC--CCccccCHHHHhhhheeE
Confidence 466666543 33456666667777763 3457788888999999987654332111 112224566777777655
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEVK 265 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~ 265 (276)
...+. +++++.+.+++|+..+..+ .||+.|++-
T Consensus 207 ~~~v~--~~~~i~~~i~~A~~~A~~grpGPV~l~lP 240 (677)
T 1t9b_A 207 NVMVK--SVEELPLRINEAFEIATSGRPGPVLVDLP 240 (677)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhhCCCceEEEEcC
Confidence 66664 7788999999999888876 589999886
No 58
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=91.42 E-value=0.5 Score=46.12 Aligned_cols=103 Identities=12% Similarity=0.073 Sum_probs=67.3
Q ss_pred ccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCcc-ccccccCccCCcchhhhHhh
Q 023827 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA-ISTPISDQFRSDGAVVKGRA 226 (276)
Q Consensus 148 ~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~-~~~~~~~~~~~~~~~~~a~a 226 (276)
.+++|+|+|++ + -++++.++++.. +-.+-+.++.++..++|+++++.+.++. ..++++. +..|++-+..-
T Consensus 373 ~~~~a~G~A~~----G-~rp~~~~~~~F~--~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~--~~~d~~~~~~i 443 (621)
T 2o1s_A 373 AVTFAAGLAIG----G-YKPIVAIYSTFL--QRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQ--GAFDLSYLRCI 443 (621)
T ss_dssp HHHHHHHHHHT----T-CEEEEEEETTGG--GGGHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGGC--BCSHHHHTTTS
T ss_pred HHHHHHHHHHC----C-CEEEEEehHhHH--HHHHHHHHHHHHhcCCCEEEEEECCccCCCCCCccC--chHHHHHHhcC
Confidence 34566777664 2 467777787754 3233344677788999999999877752 2334433 23455444444
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 227 ~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
-|+.++.- .|+.+.+..++.|++. .++|++|-.
T Consensus 444 P~l~v~~P--~d~~e~~~~l~~a~~~---~~~Pv~i~~ 476 (621)
T 2o1s_A 444 PEMVIMTP--SDENECRQMLYTGYHY---NDGPSAVRY 476 (621)
T ss_dssp TTCEEECC--SSHHHHHHHHHHHHHC---CSSCEEEEC
T ss_pred CCCEEEec--CCHHHHHHHHHHHHHc---CCCCEEEEe
Confidence 58887754 4899999999998863 368988754
No 59
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=91.27 E-value=0.45 Score=46.17 Aligned_cols=105 Identities=15% Similarity=0.074 Sum_probs=63.9
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.|.+. ++-.++++..|=|+++. .-++..|..-++|+|+|.-+-....... ......|...+++.+--.
T Consensus 65 aA~GyAr~t---g~~gv~~~TsGpG~~N~---~~gia~A~~~~vPvl~itG~~~~~~~~~--~~~Q~~d~~~~~~~~tk~ 136 (603)
T 4feg_A 65 AAAADAKLT---GKIGVCFGSAGPGGTHL---MNGLYDAREDHVPVLALIGQFGTTGMNM--DTFQEMNENPIYADVADY 136 (603)
T ss_dssp HHHHHHHHH---SSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEECCTTTTTS--CCTTCCCCGGGGTTTCSE
T ss_pred HHHHHHHHh---CCceEEEecCCchHHHH---HHHHHHHHHcCCCEEEEecCCcccccCC--CccccccHHHHhhhhceE
Confidence 455655543 33455666667777763 2458888899999999986543221110 111123455666666555
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVK 265 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~ 265 (276)
..++. +++++.+.+.+|+..+....||+.|++-
T Consensus 137 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 169 (603)
T 4feg_A 137 NVTAV--NAATLPHVIDEAIRRAYAHQGVAVVQIP 169 (603)
T ss_dssp EEECC--CSTTHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 66664 4445666666666665556799999874
No 60
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=91.12 E-value=0.43 Score=45.86 Aligned_cols=108 Identities=15% Similarity=0.133 Sum_probs=68.1
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.|.+. ++...++|..|=|..+ ..-++..|..-++|+|+|.-+-...............|...+++.+--.
T Consensus 62 ~A~GyAr~t---g~pgv~~~TsGpG~~N---~~~~i~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~ 135 (568)
T 2c31_A 62 AASIAGYIE---GKPGVCLTVSAPGFLN---GVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKA 135 (568)
T ss_dssp HHHHHHHHH---SSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSSE
T ss_pred HHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEccCCCccccCCCCCcccccCHHHHHHhhhhe
Confidence 455655543 3334555555666664 3456778888999999999876543211001112223566677777666
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHc-cCCCEEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIG-EGRPILIEVKC 266 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~-~~~P~lIe~~t 266 (276)
..++. +++++...+++|+..+.. ..||+.|++-.
T Consensus 136 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 170 (568)
T 2c31_A 136 SFRIN--SIKDIPIGIARAVRTAVSGRPGGVYVDLPA 170 (568)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEET
T ss_pred eeecC--CHHHHHHHHHHHHHHhcCCCCceEEEeCCH
Confidence 66664 667788888888887776 45899998743
No 61
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=91.01 E-value=1.2 Score=43.82 Aligned_cols=101 Identities=11% Similarity=0.009 Sum_probs=66.4
Q ss_pred cchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccc--cccccCccCCcchhhhHhh
Q 023827 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (276)
Q Consensus 149 l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~--~~~~~~~~~~~~~~~~a~a 226 (276)
+++|.|+|+. +.-+++++.+..-+. -.++++..++..++|+++++.+.+++. .++++ .+..+++-+..-
T Consensus 415 v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~~~G~dG~tH--q~~edla~lr~i 485 (669)
T 2r8o_A 415 TAIANGISLH----GGFLPYTSTFLMFVE---YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTH--QPVEQVASLRVT 485 (669)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---TTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCeEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCCcCcCCCCCcc--CCHHHHHHhcCC
Confidence 3566666664 223456666644432 235668889999999999998888764 34444 234555554444
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEE
Q 023827 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (276)
Q Consensus 227 ~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe 263 (276)
.|+.++. --|..++..+++.|++. .++|++|-
T Consensus 486 P~l~V~~--Pad~~E~~~~l~~a~~~---~~~Pv~i~ 517 (669)
T 2r8o_A 486 PNMSTWR--PCDQVESAVAWKYGVER---QDGPTALI 517 (669)
T ss_dssp TTCEEEC--CSSHHHHHHHHHHHHHC---SSSCEEEE
T ss_pred CCCEEEe--cCCHHHHHHHHHHHHHh---CCCcEEEE
Confidence 5776654 35889999999999862 36899874
No 62
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=90.69 E-value=0.58 Score=45.27 Aligned_cols=104 Identities=21% Similarity=0.059 Sum_probs=67.0
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.|.+. ++-.++++..|=|..+. .-++..|..-++|+|+|.-+-........ .....|...+++.+--.
T Consensus 58 ~A~GyAr~t---gk~~v~~~tsGpG~~N~---~~gl~~A~~~~vPll~Itg~~p~~~~g~~--~~Q~~d~~~~~~~~tk~ 129 (590)
T 1v5e_A 58 AAVMQSKFG---GNLGVTVGSGGPGASHL---INGLYDAAMDNIPVVAILGSRPQRELNMD--AFQELNQNPMYDHIAVY 129 (590)
T ss_dssp HHHHHHHTT---CCCCEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTTT--CTTCCCCHHHHHTTCSE
T ss_pred HHHHHHHHH---CCCEEEEeCcChHHHHH---HHHHHHHHhcCCCEEEEcCCCCcccCCCC--cccccCHHHHHHhhccE
Confidence 455555442 33445555567676663 33577788889999999987654322111 11224566777777655
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVK 265 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~ 265 (276)
...+. +++++.+.+++|+..+..++ ||+.| +-
T Consensus 130 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l-iP 162 (590)
T 1v5e_A 130 NRRVA--YAEQLPKLVDEAARMAIAKRGVAVLE-VP 162 (590)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHHTTSEEEEE-EE
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCceEEE-Ec
Confidence 66664 67788888888888887776 89988 53
No 63
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=90.66 E-value=1.2 Score=43.45 Aligned_cols=99 Identities=17% Similarity=0.127 Sum_probs=64.1
Q ss_pred chhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccc--cccccCccCCcchhhhHhhc
Q 023827 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRAY 227 (276)
Q Consensus 150 ~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~--~~~~~~~~~~~~~~~~a~a~ 227 (276)
++|+|+|++ |..+++++.+++... -.++.+..++..++|+++++.+.+++. +++++ .+..+++-+..--
T Consensus 369 ~~a~G~A~~----G~~~~~~~~f~~Fl~---~a~dqi~~~a~~~~~v~~v~~~~g~~~G~dG~tH--~~~ed~a~l~~iP 439 (616)
T 3mos_A 369 SIAVGCATR----NRTVPFCSTFAAFFT---RAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQ--MALEDLAMFRSVP 439 (616)
T ss_dssp HHHHHHHGG----GCCEEEEEEEGGGGG---GGHHHHHHHHHTTCCEEEEEESBSGGGCTTCGGG--CBSSHHHHHHTST
T ss_pred HHHHHHHHc----CCCCEEEEehHHHHH---HHHHHHHHHHHhCCCeEEEEECCCccccCCCCcc--cCHHHHHHhcCCC
Confidence 445555554 323456678888864 345668788889999999988777643 33433 2345555444444
Q ss_pred CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEE
Q 023827 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (276)
Q Consensus 228 G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe 263 (276)
|+.++ .-.|+.++..+++.|.+ .++|++|.
T Consensus 440 ~l~V~--~P~d~~e~~~~l~~a~~----~~gp~~ir 469 (616)
T 3mos_A 440 TSTVF--YPSDGVATEKAVELAAN----TKGICFIR 469 (616)
T ss_dssp TEEEE--CCCSHHHHHHHHHHHHT----CCSEEEEE
T ss_pred CCEEE--ecCCHHHHHHHHHHHHh----cCCCEEEE
Confidence 66654 33588898888888775 46898764
No 64
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=90.52 E-value=1.1 Score=44.10 Aligned_cols=102 Identities=15% Similarity=0.094 Sum_probs=66.6
Q ss_pred cchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccc--cccccCccCCcchhhhHhh
Q 023827 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (276)
Q Consensus 149 l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~--~~~~~~~~~~~~~~~~a~a 226 (276)
+++|.|+|+. |.-++++..+.=.+. -.++++..++..++|+++++.+.+++. .++++ .+..|++-+..-
T Consensus 410 ~~~a~GlA~~----Gg~~P~~~t~~~F~~---~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tH--q~~edla~lr~i 480 (651)
T 2e6k_A 410 GAILNGLNLH----GGYRAYGGTFLVFSD---YMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTH--QPVEHLMSLRAM 480 (651)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---GSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEeHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCcCcc--ccHHHHHHhcCC
Confidence 3467776665 212456665522221 235668889999999999998888764 34444 234555554444
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 227 ~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
.|+.++.- -|+.++..+++.|++. .++|++|-.
T Consensus 481 P~l~V~~P--ad~~E~~~~l~~A~~~---~~~Pv~i~~ 513 (651)
T 2e6k_A 481 PNLFVIRP--ADAYETFYAWLVALRR---KEGPTALVL 513 (651)
T ss_dssp TTCEEECC--SSHHHHHHHHHHHHHC---CSSCEEEEC
T ss_pred CCcEEEec--CCHHHHHHHHHHHHHc---CCCCEEEEE
Confidence 58776643 5889999999999863 368988764
No 65
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=90.45 E-value=1.2 Score=43.28 Aligned_cols=107 Identities=16% Similarity=0.178 Sum_probs=69.5
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.|.+.. ++-.++++..|=|..+. .-++..|..-++|+|+|.-+-....... ......|..++++.+--.
T Consensus 80 ~A~GyAr~tg--g~~~v~~~TsGpG~~N~---~~~l~~A~~~~vPlvvItg~~p~~~~~~--~~~Q~~d~~~~~~~~tk~ 152 (616)
T 2pan_A 80 MAEGYTRATA--GNIGVCLGTSGPAGTDM---ITALYSASADSIPILCITGQAPRARLHK--EDFQAVDIEAIAKPVSKM 152 (616)
T ss_dssp HHHHHHHHST--TCCEEEEECSTHHHHTS---HHHHHHHHHTTCCEEEEEEECCGGGTTT--TCTTCCCHHHHHGGGSSE
T ss_pred HHHHHHHhcC--CCceEEEeCCCchHHHH---HHHHHHHHhcCCCEEEEecCCcccccCc--ccccccCHHHHHHHHHHh
Confidence 4566665531 12234455567666653 3457788888999999997765432211 111234677778877666
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEE
Q 023827 231 SIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEVKC 266 (276)
Q Consensus 231 ~~~vdg~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t 266 (276)
..++. ++.++...+++|+..++.+ .||+.|++-.
T Consensus 153 ~~~v~--~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~ 187 (616)
T 2pan_A 153 AVTVR--EAALVPRVLQQAFHLMRSGRPGPVLVDLPF 187 (616)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHSSSCCCEEEEEEH
T ss_pred hcccC--CHHHHHHHHHHHHHHHhcCCCceEEEEcch
Confidence 66664 6778888999998887765 4899998743
No 66
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=90.40 E-value=0.32 Score=44.84 Aligned_cols=108 Identities=13% Similarity=0.149 Sum_probs=59.0
Q ss_pred ccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccc-cccccCccCCcchhhhHh-
Q 023827 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGR- 225 (276)
Q Consensus 148 ~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~-~~~~~~~~~~~~~~~~a~- 225 (276)
.+.+|+|++++- .+.++...|.|-..+ .+.|..++..++|+|+++-+..... ..+..... ...+..+..
T Consensus 76 a~~~a~Gaa~aG-----~r~~~~ts~~G~~~~---~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~-sd~~~~~~~~ 146 (395)
T 1yd7_A 76 SIAAAIGASWAG-----AKAMTATSGPGFSLM---QENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQ-GDIMQAIWGT 146 (395)
T ss_dssp HHHHHHHHHHTT-----CCEEEEEETTHHHHH---TTTCC----CCCCEEEEEEC-------------------------
T ss_pred HHHHHHHHHHhC-----CcEEEEeCchHHHHH---HHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccch-hHHHHHHhcc
Confidence 355677777653 356677778776642 3446667778899999887654322 10111111 011222222
Q ss_pred --hcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 226 --AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 226 --a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
.+|++++.. .++.+.+..+..|.+.+++.+.|+++....
T Consensus 147 ~g~~g~~vl~p--~~~qea~~l~~~A~~lA~~~~~PVi~~~~~ 187 (395)
T 1yd7_A 147 HGDHSLIVLSP--STVQEAFDFTIRAFNLSEKYRTPVILLTDA 187 (395)
T ss_dssp --CCCCEEECC--CSHHHHHHHHHHHHHHHHHHTSEEEEEECH
T ss_pred CCCcceEEEeC--CCHHHHHHHHHHHHHHHHHHCCCEEEEcch
Confidence 246777655 478999999999998887778999987643
No 67
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=89.54 E-value=2.5 Score=41.64 Aligned_cols=102 Identities=13% Similarity=0.059 Sum_probs=66.8
Q ss_pred ccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccc--cccccCccCCcchhhhHh
Q 023827 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGR 225 (276)
Q Consensus 148 ~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~--~~~~~~~~~~~~~~~~a~ 225 (276)
.+++|.|+|+. +.-++++..+.+-.. ...+++..++..++|++++....+++. +++++. +..+++-+..
T Consensus 415 ~v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~THq--~~ed~a~lr~ 485 (663)
T 3kom_A 415 MAAIMNGLSLY----GGIKPYGGTFLVFSD---YSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTHQ--PIEHVPSLRL 485 (663)
T ss_dssp HHHHHHHHHHH----SSCEEEEEEEGGGHH---HHHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTC--CSSHHHHHHT
T ss_pred HHHHHHHHHHc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCCcC--CHHHHHHHhc
Confidence 34567777764 223566666654432 245678888999999999998777653 344442 3445555444
Q ss_pred hcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEE
Q 023827 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (276)
Q Consensus 226 a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe 263 (276)
--|+.++. --|+.+...+++.|++ ..++|++|-
T Consensus 486 iPnl~V~~--Pad~~e~~~~l~~A~~---~~~~Pv~ir 518 (663)
T 3kom_A 486 IPNLSVWR--PADTIETMIAWKEAVK---SKDTPSVMV 518 (663)
T ss_dssp STTCEEEC--CCSHHHHHHHHHHHHH---CSSCCEEEE
T ss_pred CCCcEEEe--eCCHHHHHHHHHHHHH---hCCCCEEEE
Confidence 45776654 3588899999998886 247899874
No 68
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=89.41 E-value=1.9 Score=42.47 Aligned_cols=101 Identities=18% Similarity=0.125 Sum_probs=65.3
Q ss_pred chhhhHHHHhhhcC-CCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccc--cccccCccCCcchhhhHhh
Q 023827 150 PHAVGAAYALKMDR-KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (276)
Q Consensus 150 ~~A~G~A~a~k~~~-~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~--~~~~~~~~~~~~~~~~a~a 226 (276)
++|.|+|+. | .-++++.++.+.+. -.++++..++..++|+++++...+++. .++++ .+..+++-+..-
T Consensus 428 ~~a~GlA~~----G~~~~P~~~t~~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~tH--q~~edla~lr~i 498 (675)
T 1itz_A 428 AICNGIALH----SPGFVPYCATFFVFTD---YMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTH--QPIEHLVSFRAM 498 (675)
T ss_dssp HHHHHHHTT----CTTCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHSS
T ss_pred HHHHHHHhc----CCCCEEEEEEHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCCCCc--CcHHHHHHhccC
Confidence 456666653 3 13556666544332 356778889999999999997777653 44444 234555544433
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 227 ~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
.|+.++. --|+.++..+++.|++. .++|++|-.
T Consensus 499 P~l~V~~--Pad~~e~~~~l~~a~~~---~~~Pv~i~~ 531 (675)
T 1itz_A 499 PNILMLR--PADGNETAGAYKVAVLN---RKRPSILAL 531 (675)
T ss_dssp SSCEEEC--CCSHHHHHHHHHHHHHC---TTSCEEEEE
T ss_pred CCeEEEE--CCCHHHHHHHHHHHHHh---CCCcEEEEe
Confidence 5666553 35889999999998862 368998853
No 69
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=89.12 E-value=0.6 Score=45.67 Aligned_cols=101 Identities=17% Similarity=0.115 Sum_probs=64.8
Q ss_pred cchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCcc-ccccccCccCCcchhhhHhhc
Q 023827 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA-ISTPISDQFRSDGAVVKGRAY 227 (276)
Q Consensus 149 l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~-~~~~~~~~~~~~~~~~~a~a~ 227 (276)
+++|+|+|++ | -++++.++.+.. +-.+.+.++.++..++|+++++.+.+.. -.++++.. ..|++-+..--
T Consensus 377 ~~~a~G~A~~----G-~rp~~~~~~~F~--~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~dG~tH~~--~~d~a~~r~iP 447 (629)
T 2o1x_A 377 VTTAAGMALQ----G-MRPVVAIYSTFL--QRAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHNG--VFDLSFLRSIP 447 (629)
T ss_dssp HHHHHHHHHT----T-CEEEEEEEHHHH--GGGHHHHHHTTTTTTCCCEEEEESBBCCCTTCTTTCB--CSHHHHTTTST
T ss_pred HHHHHHHHHc----C-CEEEEEecHHHH--HHHHHHHHHHHhhcCCCEEEEEECCccCCCCCcccCc--cHHHHHHHccC
Confidence 4466666664 2 356666776643 2233344677888999999999877752 23343332 34444444435
Q ss_pred CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 228 G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
|+.++.- .|+.+.+..++.|++. ++|++|-.
T Consensus 448 ~l~v~~P--~d~~e~~~~~~~a~~~----~~Pv~i~~ 478 (629)
T 2o1x_A 448 GVRIGLP--KDAAELRGMLKYAQTH----DGPFAIRY 478 (629)
T ss_dssp TCEEECC--SSHHHHHHHHHHHHHS----SSCEEEEC
T ss_pred CcEEEec--CCHHHHHHHHHHHHhC----CCCEEEEe
Confidence 8877643 5899999999999873 68998754
No 70
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=88.30 E-value=0.85 Score=44.18 Aligned_cols=109 Identities=12% Similarity=0.007 Sum_probs=65.7
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.|.+. ++..+++|..|=|+++. .-++..|..-++|+|+|.-+-........ .....|...+++.+--.
T Consensus 84 aA~GyAr~t---gkpgv~~~TsGpG~~N~---~~gia~A~~~~vPlv~ItG~~~~~~~g~~--~~Q~~d~~~~~~~~tk~ 155 (604)
T 2x7j_A 84 FALGLAKAK---QRPVLLICTSGTAAANF---YPAVVEAHYSRVPIIVLTADRPHELREVG--APQAINQHFLFGNFVKF 155 (604)
T ss_dssp HHHHHHHHH---TSCEEEEECSSHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGSSSC--CTTCCCCTTTTGGGSSC
T ss_pred HHHHHHHhh---CCCEEEEECChhHHHHH---HHHHHHHhhcCCCEEEEeCCCCHHHhCCC--CCCcCcHHHHhhhheee
Confidence 455665543 33455666667777763 34577888889999999976544321111 11123455566666555
Q ss_pred EEEEcC-CC----HHHHHHHHHHHHHHhHc-cCCCEEEEEEEe
Q 023827 231 SIRVDG-ND----ALAIYSAVHAAREMAIG-EGRPILIEVKCL 267 (276)
Q Consensus 231 ~~~vdg-~d----~~~v~~a~~~a~~~~r~-~~~P~lIe~~t~ 267 (276)
...+.. .+ ...+.+.+++|+..+.. ..||+.|++-.+
T Consensus 156 ~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 198 (604)
T 2x7j_A 156 FTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLR 198 (604)
T ss_dssp EEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred eeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccC
Confidence 666642 22 01267777888777776 458999998654
No 71
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=88.30 E-value=1.9 Score=42.56 Aligned_cols=101 Identities=15% Similarity=0.095 Sum_probs=65.1
Q ss_pred cchhhhHHHHhhhcCCCc-eEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccc--cccccCccCCcchhhhHh
Q 023827 149 LPHAVGAAYALKMDRKDA-CAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGR 225 (276)
Q Consensus 149 l~~A~G~A~a~k~~~~~~-~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~--~~~~~~~~~~~~~~~~a~ 225 (276)
+++|.|+|+. |.-+ +++..+.+-+. -.++++..++..++|+++++...+++. .++++ .+..+++-+..
T Consensus 422 vg~a~GlA~~----Gg~~~P~~~~f~~F~~---~~~~air~~a~~~lpvv~v~t~~g~g~G~dG~tH--q~~edla~lr~ 492 (680)
T 1gpu_A 422 GAIMNGISAF----GANYKPYGGTFLNFVS---YAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTH--QPIETLAHFRS 492 (680)
T ss_dssp HHHHHHHHHH----CTTCEEEEEEEHHHHG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHT
T ss_pred HHHHHHHHhc----CCCceEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCcc--CCHHHHHHhcC
Confidence 3466676664 2124 55555533221 235668888999999999998777664 34544 23455555444
Q ss_pred hcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEE
Q 023827 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (276)
Q Consensus 226 a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe 263 (276)
-.|+.++. --|+.+...+++.|++. .++|++|-
T Consensus 493 iP~l~V~~--Pad~~e~~~~l~~A~~~---~~~Pv~i~ 525 (680)
T 1gpu_A 493 LPNIQVWR--PADGNEVSAAYKNSLES---KHTPSIIA 525 (680)
T ss_dssp SSSCEEEC--CCSHHHHHHHHHHHHHC---SSCCEEEE
T ss_pred CCCCEEEe--cCCHHHHHHHHHHHHHh---CCCcEEEE
Confidence 45776553 35889999999998862 36899884
No 72
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=88.16 E-value=0.86 Score=43.25 Aligned_cols=109 Identities=21% Similarity=0.059 Sum_probs=65.9
Q ss_pred chhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCc
Q 023827 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (276)
Q Consensus 150 ~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (276)
-+|.|.|.+. ++..++++..|=|..+. .-++..|...++|+|+|.-+-..........+. ..|...+++.+--
T Consensus 52 ~~A~Gyar~t---g~~~v~~~tsGpG~~N~---~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~q~-~~d~~~~~~~~~k 124 (528)
T 1q6z_A 52 GIADGYAQAS---RKPAFINLHSAAGTGNA---MGALSNAWNSHSPLIVTAGQQTRAMIGVEALLT-NVDAANLPRPLVK 124 (528)
T ss_dssp HHHHHHHHHH---TSCEEEEEEHHHHHHHT---HHHHHHHHHTTCCEEEEEEECCHHHHTTTCTTC-CTTGGGSSTTSCS
T ss_pred HHHHHHHHHh---CCCEEEEEcCChHHHHH---HHHHHHHhhcCCCEEEEeCCCcccccCCCcccc-cccHHHHHHHhhH
Confidence 3466666553 33445556667777753 345777888999999998765433211111111 0245555655544
Q ss_pred eEEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEEe
Q 023827 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEVKCL 267 (276)
Q Consensus 230 ~~~~vdg~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t~ 267 (276)
...++. +++++...+++|+..+..++ ||+.|++-.+
T Consensus 125 ~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 161 (528)
T 1q6z_A 125 WSYEPA--SAAEVPHAMSRAIHMASMAPQGPVYLSVPYD 161 (528)
T ss_dssp CEECCS--SGGGHHHHHHHHHHHHHSSSCCCEEEEEEGG
T ss_pred hhhcCC--CHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 444453 56677778888887776554 6999988554
No 73
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=87.46 E-value=3.1 Score=40.70 Aligned_cols=101 Identities=14% Similarity=0.007 Sum_probs=67.0
Q ss_pred ccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccc--cccccCccCCcchhhhHh
Q 023827 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGR 225 (276)
Q Consensus 148 ~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~--~~~~~~~~~~~~~~~~a~ 225 (276)
.+++|.|+|+. +.-++++.++.+ |.+ -.++.+..++..++|++++....+.+. +++++. +..+++-+..
T Consensus 394 ~v~~a~GlA~~----gG~~P~~~~f~~--F~~-~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~THq--~~ed~a~lr~ 464 (632)
T 3l84_A 394 MAAINNAFARY----GIFLPFSATFFI--FSE-YLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQ--PIEQLSTFRA 464 (632)
T ss_dssp HHHHHHHHHHH----SSCEEEEEEEGG--GHH-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGS--CSSHHHHHHH
T ss_pred HHHHHHHHHHc----CCCEEEEEecHH--HHH-HHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCCC--CHhHHHHHhc
Confidence 34567777765 223566666543 332 345677788889999999998777653 455442 3455555555
Q ss_pred hcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEE
Q 023827 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (276)
Q Consensus 226 a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe 263 (276)
--|+.++. --|+.+...+++.|++ .++|++|-
T Consensus 465 iP~l~V~~--P~d~~e~~~~l~~A~~----~~~Pv~ir 496 (632)
T 3l84_A 465 MPNFLTFR--PADGVENVKAWQIALN----ADIPSAFV 496 (632)
T ss_dssp SSSCEEEC--CSSHHHHHHHHHHHHH----CSSCEEEE
T ss_pred CCCCEEEe--cCCHHHHHHHHHHHHh----CCCCEEEE
Confidence 45777664 3488899999999886 47899875
No 74
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=87.38 E-value=1.7 Score=38.98 Aligned_cols=101 Identities=16% Similarity=0.073 Sum_probs=61.2
Q ss_pred cccchhhhHHHHhhhcCCCceEEEE-ECCCcCCcchHHHHHH-HHHH--------CCCCEEEEEEeCCccccccccCccC
Q 023827 147 TQLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALN-FSAV--------TEAPVIFICRNNGWAISTPISDQFR 216 (276)
Q Consensus 147 ~~l~~A~G~A~a~k~~~~~~~vv~~-~GDG~~~~G~~~Eal~-~A~~--------~~Lpvi~vv~nN~~~~~~~~~~~~~ 216 (276)
..+++|.|+|++- -++++++ ++++.. ..++.+. .++. +++|+++++.+.+ +...+++. +
T Consensus 63 ~~~~~a~G~A~~G-----~rp~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~~~G~th~--s 131 (338)
T 1qs0_B 63 GIVGTAVGMGAYG-----LRPVVEIQFADYFY---PASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-GIYGGQTH--S 131 (338)
T ss_dssp HHHHHHHHHHHHT-----CEEEEECSCGGGCG---GGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-SSSCCSSS--S
T ss_pred HHHHHHHHHHhCC-----CEEEEEeccHhHHH---HHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-CCCCcccc--c
Confidence 3456677777762 2344434 888762 2344443 2332 3599999987655 33333332 2
Q ss_pred CcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 217 SDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 217 ~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
..|++-+..-.||.++.- .|+.+.+..++.|++. ++|++|-.
T Consensus 132 ~~d~~~l~~iP~l~V~~P--sd~~e~~~~l~~A~~~----~~Pv~i~~ 173 (338)
T 1qs0_B 132 QSPEAMFTQVCGLRTVMP--SNPYDAKGLLIASIEC----DDPVIFLE 173 (338)
T ss_dssp CCCHHHHTTSTTCEEECC--CSHHHHHHHHHHHHHS----SSCEEEEE
T ss_pred ccHHHHHhcCCCCEEEee--CCHHHHHHHHHHHHhc----CCcEEEEE
Confidence 334543333348887754 4899999999998863 68998843
No 75
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=87.24 E-value=3.1 Score=41.02 Aligned_cols=101 Identities=13% Similarity=0.036 Sum_probs=65.2
Q ss_pred chhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccc--cccccCccCCcchhhhHhhc
Q 023827 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRAY 227 (276)
Q Consensus 150 ~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~--~~~~~~~~~~~~~~~~a~a~ 227 (276)
++|.|+|+. +.-++++.++..-+. -.++++..++..++|+++++...+++. .++++ .+..+++-+..-.
T Consensus 416 ~~a~GlA~~----GG~~P~~~~~~~F~~---~~~~~ir~~a~~~~pvv~~~t~~g~g~G~dG~tH--q~~edla~lr~iP 486 (673)
T 1r9j_A 416 AILNGLDAH----DGIIPFGGTFLNFIG---YALGAVRLAAISHHRVIYVATHDSIGVGEDGPTH--QPVELVAALRAMP 486 (673)
T ss_dssp HHHHHHHHH----SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHHST
T ss_pred HHHHHHHhc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEECCccCcCCCCccc--CCHHHHHHHcCCC
Confidence 456666654 223456666533322 235668889999999999997777654 34544 2345555544445
Q ss_pred CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 228 G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
|+.++. --|+.++..+++.|++. .++|++|-.
T Consensus 487 ~l~V~~--Pad~~e~~~~l~~a~~~---~~~Pv~i~~ 518 (673)
T 1r9j_A 487 NLQVIR--PSDQTETSGAWAVALSS---IHTPTVLCL 518 (673)
T ss_dssp TCEEEC--CSSHHHHHHHHHHHHHC---TTCCEEEEC
T ss_pred CCEEEe--CCCHHHHHHHHHHHHHh---CCCeEEEEE
Confidence 776553 45888999999998862 368998853
No 76
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=87.16 E-value=1.7 Score=39.06 Aligned_cols=99 Identities=16% Similarity=0.061 Sum_probs=59.7
Q ss_pred cccchhhhHHHHhhhcCCCceEEEE-ECCCcCCcchHHHHHHH-HH--------HCCCCEEEEEEeCCc-cccccccCcc
Q 023827 147 TQLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALNF-SA--------VTEAPVIFICRNNGW-AISTPISDQF 215 (276)
Q Consensus 147 ~~l~~A~G~A~a~k~~~~~~~vv~~-~GDG~~~~G~~~Eal~~-A~--------~~~Lpvi~vv~nN~~-~~~~~~~~~~ 215 (276)
..+++|.|+|++- -++++.+ ++|... ..++.+.. ++ ..++|+++++.+ ++ +-..+++.+
T Consensus 73 ~~v~~a~G~A~~G-----~rp~~~~~f~~F~~---~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G~tHs~- 142 (341)
T 2ozl_B 73 GFAGIAVGAAMAG-----LRPICEFMTFNFSM---QAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVAAQHSQ- 142 (341)
T ss_dssp HHHHHHHHHHHTT-----CEEEEECSSGGGGG---GGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCCGGGCC-
T ss_pred HHHHHHHHHHHCC-----CEEEEEeccHHHHH---HHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCCcchhh-
Confidence 3355677777652 2445543 777762 23344543 33 278999999986 43 223444422
Q ss_pred CCcchhhhHhh-cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 023827 216 RSDGAVVKGRA-YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEV 264 (276)
Q Consensus 216 ~~~~~~~~a~a-~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 264 (276)
..+ ...+. .|+.++.- .|+.+.+..++.|++ .++|++|-.
T Consensus 143 -~~e--a~l~~iP~l~V~~P--sd~~e~~~~l~~a~~----~~~Pv~i~~ 183 (341)
T 2ozl_B 143 -CFA--AWYGHCPGLKVVSP--WNSEDAKGLIKSAIR----DNNPVVVLE 183 (341)
T ss_dssp -CCH--HHHHTSTTCEEECC--CSHHHHHHHHHHHHH----SSSCEEEEE
T ss_pred -HHH--HHhccCCCCEEEEe--CCHHHHHHHHHHHHh----cCCCEEEEE
Confidence 122 33333 48877654 489999999999886 368998764
No 77
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=86.73 E-value=1.3 Score=42.47 Aligned_cols=107 Identities=13% Similarity=0.071 Sum_probs=63.7
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCcccc---ccccC---ccCCcchhhhH
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS---TPISD---QFRSDGAVVKG 224 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~---~~~~~---~~~~~~~~~~a 224 (276)
+|.|.|.+. + ...++|..|=|+++ ..-++..|..-++|+|+|.-+-..... ..... .....+..+++
T Consensus 57 ~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q~~~~~~ 129 (563)
T 2vk8_A 57 AADGYARIK---G-MSCIITTFGVGELS---ALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRMS 129 (563)
T ss_dssp HHHHHHHHH---S-CEEEEEETTHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSSHHHHHH
T ss_pred HHHHHHHhh---C-CcEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchHHHHHHh
Confidence 456666553 3 34555566777765 234577888899999999976543221 00000 01122456777
Q ss_pred hhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 225 RAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 225 ~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
+.+--....+. +++++.+.+.+|+..+...+||+.|++-.
T Consensus 130 ~~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 169 (563)
T 2vk8_A 130 ANISETTAMIT--DIATAPAEIDRCIRTTYVTQRPVYLGLPA 169 (563)
T ss_dssp HTTCSEEEECC--CTTTHHHHHHHHHHHHHHHTSCEEEEEET
T ss_pred hhhEEEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEech
Confidence 77776667775 44445555555555555456999998754
No 78
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=86.28 E-value=3 Score=41.23 Aligned_cols=102 Identities=18% Similarity=0.124 Sum_probs=64.7
Q ss_pred ccchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCcc--ccccccCccCCcchhhhHh
Q 023827 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA--ISTPISDQFRSDGAVVKGR 225 (276)
Q Consensus 148 ~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~--~~~~~~~~~~~~~~~~~a~ 225 (276)
.+++|.|+|+. +.-++++..+.- |.. -...++..++..++|+++++...+++ .+++++. +..+++-+..
T Consensus 439 mv~~A~GlA~~----gG~~P~~~tf~~--Fs~-f~~~air~~al~~lpVv~v~~~~gigvG~dG~THq--~ied~a~lr~ 509 (690)
T 3m49_A 439 MGAAMNGIALH----GGLKTYGGTFFV--FSD-YLRPAIRLAALMQLPVTYVFTHDSIAVGEDGPTHE--PIEQLAALRA 509 (690)
T ss_dssp HHHHHHHHHHH----SSCEEEEEEEGG--GGG-GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGC--CSSHHHHHHT
T ss_pred HHHHHHHHHHc----CCCEEEEEecHH--HHH-HHHHHHHHHHhcCCCcEEEEECCCcCCCCCCCccC--CHHHHHHHhc
Confidence 34567777775 112455544322 111 12345777889999999999988864 3455542 3455555444
Q ss_pred hcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEE
Q 023827 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (276)
Q Consensus 226 a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe 263 (276)
-.|+.++. --|+.+...+++.|++. .++|++|-
T Consensus 510 iPnl~V~~--Pad~~E~~~~l~~Ai~~---~~~Pv~ir 542 (690)
T 3m49_A 510 MPNVSVIR--PADGNESVAAWRLALES---TNKPTALV 542 (690)
T ss_dssp STTCEEEC--CSSHHHHHHHHHHHHHC---SSSCEEEE
T ss_pred CCCCEEEe--eCCHHHHHHHHHHHHHc---CCCCEEEE
Confidence 45777654 35888999999998862 36899874
No 79
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=85.63 E-value=1.7 Score=41.42 Aligned_cols=107 Identities=18% Similarity=0.086 Sum_probs=63.5
Q ss_pred chhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCcccc---ccccC---ccCCcchhhh
Q 023827 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS---TPISD---QFRSDGAVVK 223 (276)
Q Consensus 150 ~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~---~~~~~---~~~~~~~~~~ 223 (276)
-+|.|.|.+. + ...+++..|=|.++. .-++..|...++|+|+|.-+-..... ..... .....+..++
T Consensus 57 ~~A~Gyar~t---g-~~v~~~tsGpG~~N~---~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q~~~~~ 129 (552)
T 1ovm_A 57 YAADGYARCK---G-FAALLTTFGVGELSA---MNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHM 129 (552)
T ss_dssp HHHHHHHHHH---S-CEEEEEETTHHHHHT---HHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHH
T ss_pred HHHHHHHHhh---C-CcEEEEccCCcHHHH---HHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHHHHHHH
Confidence 3566766653 2 335666667776542 34577888999999999976543221 00000 0012245667
Q ss_pred HhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 224 GRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 224 a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
++.+-.....+.. +++...+++|+..+...+||+.|++-.
T Consensus 130 ~~~~tk~~~~v~~---~~~~~~i~~A~~~a~~~~GPV~l~iP~ 169 (552)
T 1ovm_A 130 SEPITVAQAVLTE---QNACYEIDRVLTTMLRERRPGYLMLPA 169 (552)
T ss_dssp TGGGCSEEEECCT---TTHHHHHHHHHHHHHHHTCCEEEEEEH
T ss_pred HHhheeEEEEEcc---ccHHHHHHHHHHHHHhCCCCEEEEeeh
Confidence 7777766777753 345555555555554446999998854
No 80
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=85.47 E-value=1.7 Score=41.73 Aligned_cols=108 Identities=10% Similarity=0.071 Sum_probs=64.0
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.|.+. ++-.+++|..|=|+++. .-++..|..-++|+|+|.-+-....... ......|..++++.+--.
T Consensus 64 aAdGyAr~t---G~pgv~~~TsGpG~~N~---~~gia~A~~d~vPll~itG~~p~~~~g~--~~~Qe~d~~~~~~~~tk~ 135 (578)
T 3lq1_A 64 FALGLAKAS---KRPVVLLCTSGTAAANY---FPAVAEANLSQIPLIVLTADRPHELRNV--GAPQAMDQLHLYGSHVKD 135 (578)
T ss_dssp HHHHHHHHH---CCCEEEEECSSHHHHTT---HHHHHHHHHTTCCEEEEEEECCGGGTTS--SCTTCCCCTTTTGGGSSE
T ss_pred HHHHHHHhh---CCCEEEEECCchhhhhh---hHHHHHHHhcCCCeEEEeCCCCHHhhcC--CCCCCcCHhhHHhhheee
Confidence 455665543 34456666668777763 2458888999999999997543322111 111123455556665444
Q ss_pred EEEEc-CCCHH----HHHHHHHHHHHHhHcc-CCCEEEEEEE
Q 023827 231 SIRVD-GNDAL----AIYSAVHAAREMAIGE-GRPILIEVKC 266 (276)
Q Consensus 231 ~~~vd-g~d~~----~v~~a~~~a~~~~r~~-~~P~lIe~~t 266 (276)
...+. ..+.. .+..++++|+..++.+ .||+.|++-.
T Consensus 136 ~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~ 177 (578)
T 3lq1_A 136 FTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPL 177 (578)
T ss_dssp EEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEC
T ss_pred EeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECcc
Confidence 55554 33432 2445677777766655 5899999864
No 81
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=85.09 E-value=2.1 Score=41.02 Aligned_cols=106 Identities=16% Similarity=0.122 Sum_probs=63.3
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCcccccc---ccCcc---CCcchhhhH
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP---ISDQF---RSDGAVVKG 224 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~---~~~~~---~~~~~~~~a 224 (276)
+|.|.|.+. + ...+++..|=|.++ ..-++..|..-++|+|+|.-+........ ..... ...+...++
T Consensus 78 ~A~GyAr~t---G-~~v~~~tsGpG~~N---~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (570)
T 2vbf_A 78 MADGYARTK---K-AAAFLTTFGVGELS---AINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMH 150 (570)
T ss_dssp HHHHHHHHH---S-CEEEEEETTHHHHH---HHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHT
T ss_pred HHHHHHHHh---C-CeEEEEcCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHh
Confidence 466666542 3 34555555666654 33457788889999999997765432110 00000 122345667
Q ss_pred hhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 225 RAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 225 ~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
+.+--....+.. +++...+++|+..+..++||+.|++-.
T Consensus 151 ~~~tk~~~~v~~---~~~~~~l~~A~~~A~~~~GPV~l~iP~ 189 (570)
T 2vbf_A 151 EPVTAARTLLTA---ENATYEIDRVLSQLLKERKPVYINLPV 189 (570)
T ss_dssp GGGCSEEEECCT---TTHHHHHHHHHHHHHHHCCCEEEEEEH
T ss_pred hhhEEEEEEECc---ccHHHHHHHHHHHHhhCCCCEEEEcch
Confidence 777666667653 455556666666555567999999854
No 82
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=85.04 E-value=3.9 Score=37.13 Aligned_cols=99 Identities=16% Similarity=-0.006 Sum_probs=54.3
Q ss_pred cccchhhhHHHHhhhcCCCceEEEE-ECCCcCCcchHHHHH-HHHHHC--------CCCEEEEEEeCCccccccccCccC
Q 023827 147 TQLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAAL-NFSAVT--------EAPVIFICRNNGWAISTPISDQFR 216 (276)
Q Consensus 147 ~~l~~A~G~A~a~k~~~~~~~vv~~-~GDG~~~~G~~~Eal-~~A~~~--------~Lpvi~vv~nN~~~~~~~~~~~~~ 216 (276)
..+++|.|+|++- -++++.+ ++|... . .++.+ +-++.. ++|+++++.+.+...+.+.+ .
T Consensus 109 ~~v~~a~G~A~~G-----~rpv~~~tf~~Fl~-~--a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g~g~~h---s 177 (369)
T 1ik6_A 109 GILGFAMGMAMAG-----LKPVAEIQFVDFIW-L--GADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGLYH---S 177 (369)
T ss_dssp HHHHHHHHHHHTT-----CEEEEECCCC-----C--CHHHHHHHHHHHHC------CCCCEEEEEECC------------
T ss_pred HHHHHHHHHHHCC-----CeeEEEecchhHHH-H--HHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCCCCccc---c
Confidence 3355677777652 2445544 888652 2 23334 334433 99999999877643222222 2
Q ss_pred CcchhhhHhh-cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEE
Q 023827 217 SDGAVVKGRA-YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (276)
Q Consensus 217 ~~~~~~~a~a-~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe 263 (276)
..+. ...++ .|+.++.- .|+.+....++.|++ .++|++|-
T Consensus 178 ~~~~-a~l~~iPnl~V~~P--sd~~e~~~ll~~A~~----~~~Pv~i~ 218 (369)
T 1ik6_A 178 NSPE-AIFVHTPGLVVVMP--STPYNAKGLLKAAIR----GDDPVVFL 218 (369)
T ss_dssp --HH-HHHHTCTTCEEECC--CSHHHHHHHHHHHHH----SSSCEEEE
T ss_pred ccHH-HHHcCCCCcEEEec--CCHHHHHHHHHHHHh----CCCCEEEE
Confidence 2232 34444 48877654 489999999999886 46899884
No 83
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=83.39 E-value=6.4 Score=34.84 Aligned_cols=98 Identities=15% Similarity=0.065 Sum_probs=58.4
Q ss_pred ccchhhhHHHHhhhcCCCceEEEE-ECCCcCCcchHHHHHH-HHHH--------CCCCEEEEEEeCCccccccccCccCC
Q 023827 148 QLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALN-FSAV--------TEAPVIFICRNNGWAISTPISDQFRS 217 (276)
Q Consensus 148 ~l~~A~G~A~a~k~~~~~~~vv~~-~GDG~~~~G~~~Eal~-~A~~--------~~Lpvi~vv~nN~~~~~~~~~~~~~~ 217 (276)
.+++|.|+|++- -++++.+ +++.. + -.++.+. .++. .++|+++++.. ++....+... ..
T Consensus 63 ~v~~a~G~A~~G-----~~p~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~h--s~ 131 (324)
T 1umd_B 63 IVGAALGMAAHG-----LRPVAEIQFADYI-F--PGFDQLVSQVAKLRYRSGGQFTAPLVVRMPS-GGGVRGGHHH--SQ 131 (324)
T ss_dssp HHHHHHHHHHHT-----CEEEEECSSGGGC-G--GGHHHHHHTTTTHHHHTTTSSCCCCEEEEEE-CSSSSCGGGS--SC
T ss_pred HHHHHHHHHHCC-----CEEEEEeccHhHH-H--HHHHHHHHHHHHHHhhcCCCCcCCEEEEEcC-CCCCCCCCcc--ch
Confidence 355677777762 2444444 77775 2 2344453 2333 68899999873 4432222221 22
Q ss_pred cchhhhHhh-cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEE
Q 023827 218 DGAVVKGRA-YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (276)
Q Consensus 218 ~~~~~~a~a-~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe 263 (276)
.+. ...+. -|+.++.- .|+.+.+..++.|++ .++|++|-
T Consensus 132 ~~~-a~~~~iP~~~V~~P--~d~~e~~~~l~~a~~----~~~Pv~i~ 171 (324)
T 1umd_B 132 SPE-AHFVHTAGLKVVAV--STPYDAKGLLKAAIR----DEDPVVFL 171 (324)
T ss_dssp CCH-HHHHTSTTCEEEEC--CSHHHHHHHHHHHHH----CSSCEEEE
T ss_pred hHH-HHHhcCCCCEEEEe--CCHHHHHHHHHHHHh----cCCCEEEE
Confidence 344 34444 47777654 489999999999985 46899874
No 84
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=82.23 E-value=7.9 Score=38.40 Aligned_cols=100 Identities=15% Similarity=0.062 Sum_probs=65.1
Q ss_pred cchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCcc--ccccccCccCCcchhhhHhh
Q 023827 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA--ISTPISDQFRSDGAVVKGRA 226 (276)
Q Consensus 149 l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~--~~~~~~~~~~~~~~~~~a~a 226 (276)
+++|.|+|+. +.-++++.++. .|.+ -....+..++..++|++++....+.+ .+++++. +..+++-+..-
T Consensus 461 v~~AaGlA~~----~G~~Pv~~~f~--~F~~-~~~~~ir~~a~~~lpv~~v~thdg~gvG~dG~THq--~~ed~a~lr~i 531 (711)
T 3uk1_A 461 SAAINGLVLH----GGYKPFGGTFL--TFSD-YSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTHQ--SVEHVASLRLI 531 (711)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEG--GGHH-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTC--CSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEEhH--HHHH-HHHHHHHHhhhcCCCEEEEEECCCcCcCCCCCccC--ChhHHHHHhcC
Confidence 4567777763 11345555543 3432 23466777888999999999877764 3455442 34555554444
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEE
Q 023827 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (276)
Q Consensus 227 ~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe 263 (276)
-|+.++. --|..+...+++.|++ .++|++|-
T Consensus 532 Pnl~V~~--Pad~~E~~~~l~~Ai~----~~~Pv~ir 562 (711)
T 3uk1_A 532 PNLDVWR--PADTVETAVAWTYAVA----HQHPSCLI 562 (711)
T ss_dssp TTCEEEC--CSSHHHHHHHHHHHHH----SSSCEEEE
T ss_pred CCCEEEe--cCCHHHHHHHHHHHHh----cCCCEEEE
Confidence 5777664 3488899999999886 47899874
No 85
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=81.25 E-value=4.3 Score=36.01 Aligned_cols=99 Identities=12% Similarity=-0.005 Sum_probs=57.9
Q ss_pred cccchhhhHHHHhhhcCCCceEEEE-ECCCcCCcchHHHHHH-HHHH--------CCCCEEEEEEeCCccccccccCccC
Q 023827 147 TQLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALN-FSAV--------TEAPVIFICRNNGWAISTPISDQFR 216 (276)
Q Consensus 147 ~~l~~A~G~A~a~k~~~~~~~vv~~-~GDG~~~~G~~~Eal~-~A~~--------~~Lpvi~vv~nN~~~~~~~~~~~~~ 216 (276)
..+++|.|+|++- -++++++ +++... -.++.+. .++. .++|+++++.. +.....+.. ..
T Consensus 61 ~~v~~a~G~A~~G-----~rp~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~--hs 129 (324)
T 1w85_B 61 GIGGLAIGLALQG-----FRPVPEIQFFGFVY---EVMDSICGQMARIRYRTGGRYHMPITIRSPF-GGGVHTPEL--HS 129 (324)
T ss_dssp HHHHHHHHHHHTT-----CEEEEBCSSGGGGG---GTHHHHHTTGGGHHHHTTTSSCCCCEEEEEE-CSSSCCCTT--SS
T ss_pred HHHHHHHHHHhCC-----CEEEEEecchhHHH---HHHHHHHHHHHHHhhhccCCCcCCEEEEEec-cCCCCCCCc--cc
Confidence 3455677777652 2344434 777752 2344443 2333 78999999873 433222221 22
Q ss_pred CcchhhhHhh-cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEE
Q 023827 217 SDGAVVKGRA-YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (276)
Q Consensus 217 ~~~~~~~a~a-~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe 263 (276)
..+. ...++ .|+.++. -.|+.+.+..++.|++ .++|++|-
T Consensus 130 ~~~~-a~~~~iP~l~V~~--Psd~~e~~~~l~~a~~----~~~Pv~i~ 170 (324)
T 1w85_B 130 DSLE-GLVAQQPGLKVVI--PSTPYDAKGLLISAIR----DNDPVIFL 170 (324)
T ss_dssp CCCH-HHHTTSTTCEEEC--CSSHHHHHHHHHHHHH----SSSCEEEE
T ss_pred ccHH-HHHccCCCCEEEe--eCCHHHHHHHHHHHHH----cCCCEEEE
Confidence 2334 34444 4776664 3589999999999886 46899884
No 86
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=80.32 E-value=8.3 Score=38.16 Aligned_cols=101 Identities=12% Similarity=0.053 Sum_probs=63.5
Q ss_pred cchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCcc--ccccccCccCCcchhhhHhh
Q 023827 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA--ISTPISDQFRSDGAVVKGRA 226 (276)
Q Consensus 149 l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~--~~~~~~~~~~~~~~~~~a~a 226 (276)
+++|.|+|+. +.-++++..+.. |.. -...++..++..++|++++....+++ .+++++ .+..+++-+..-
T Consensus 445 v~~A~GlA~~----gG~~Pv~~tF~~--F~d-~~~~~ir~~al~~lpvv~v~thdg~gvG~dG~TH--q~ied~a~lr~i 515 (700)
T 3rim_A 445 GAILSGIVLH----GPTRAYGGTFLQ--FSD-YMRPAVRLAALMDIDTIYVWTHDSIGLGEDGPTH--QPIEHLSALRAI 515 (700)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGG--GGG-GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--SCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEecHH--HHH-HHHHHHHHhcCCCCCEEEEEeCCCcccCCCCCcc--CChhHHHHHhcC
Confidence 4566777765 222445543321 221 12335778889999999999877765 345554 244566655555
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccC--CCEEEE
Q 023827 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEG--RPILIE 263 (276)
Q Consensus 227 ~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~--~P~lIe 263 (276)
-|+.++. --|+.+...+++.|++. .+ +|++|-
T Consensus 516 Pnl~V~~--Pad~~e~~~~l~~Ai~~---~~~~~Pv~ir 549 (700)
T 3rim_A 516 PRLSVVR--PADANETAYAWRTILAR---RNGSGPVGLI 549 (700)
T ss_dssp TTCEEEC--CSSHHHHHHHHHHHHTT---TTCSSCEEEE
T ss_pred CCCEEEe--CCCHHHHHHHHHHHHHc---cCCCCCEEEE
Confidence 5777654 34888999999998863 34 699885
No 87
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=78.79 E-value=4.7 Score=36.10 Aligned_cols=100 Identities=8% Similarity=-0.013 Sum_probs=59.3
Q ss_pred cccchhhhHHHHhhhcCCCceEEEE-ECCCcCCcchHHHHHH-HHHH--------CCC-CEEEEEEeCCccccccccCcc
Q 023827 147 TQLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALN-FSAV--------TEA-PVIFICRNNGWAISTPISDQF 215 (276)
Q Consensus 147 ~~l~~A~G~A~a~k~~~~~~~vv~~-~GDG~~~~G~~~Eal~-~A~~--------~~L-pvi~vv~nN~~~~~~~~~~~~ 215 (276)
..+++|.|+|++- -++++.+ ++++.. -.++.+. .++. .++ |+++++...+. ...+++.
T Consensus 78 ~~v~~a~G~A~~G-----~rp~~~~tf~~F~~---~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~-~~G~th~-- 146 (342)
T 2bfd_B 78 GIVGFGIGIAVTG-----ATAIAEIQFADYIF---PAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV-GHGALYH-- 146 (342)
T ss_dssp HHHHHHHHHHHTT-----CCEEEECSSGGGCG---GGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCC-SSCGGGS--
T ss_pred HHHHHHHHHHHCC-----CeeEEEecchhHHH---HHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCC-CCCcchh--
Confidence 3355677777752 2445543 887753 2334443 3333 345 99999876543 3334332
Q ss_pred CCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEE
Q 023827 216 RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (276)
Q Consensus 216 ~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe 263 (276)
+..|++-+..-.|+.++.- .|+.+.+..++.|+++ ++|++|-
T Consensus 147 ~~~d~~~l~~iP~l~V~~P--sd~~e~~~~l~~a~~~----~~Pv~i~ 188 (342)
T 2bfd_B 147 SQSPEAFFAHCPGIKVVIP--RSPFQAKGLLLSCIED----KNPCIFF 188 (342)
T ss_dssp SCCCHHHHHTSTTCEEECC--SSHHHHHHHHHHHHHS----SSCEEEE
T ss_pred hHhHHHHHhcCCCcEEEee--CCHHHHHHHHHHHHhc----CCcEEEE
Confidence 2345543333347776643 5899999999998863 6899884
No 88
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=76.20 E-value=9.8 Score=36.21 Aligned_cols=106 Identities=13% Similarity=-0.004 Sum_probs=63.7
Q ss_pred hhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCce
Q 023827 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (276)
Q Consensus 151 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (276)
+|.|.|.+. ++-.+++|..|=|+++. .-++..|..-++|+|+|.-+-........ .....|...+++.+--.
T Consensus 61 ~AdGyAr~t---G~pgv~~~TsGpG~~N~---~~gia~A~~d~vPll~itG~~~~~~~g~~--~~Q~~d~~~~~~~~tk~ 132 (556)
T 3hww_A 61 LALGLAKVS---KQPVAVIVTSGTAVANL---YPALIEAGLTGEKLILLTADRPPELIDCG--ANQAIRQPGMFASHPTH 132 (556)
T ss_dssp HHHHHHHHH---CSCEEEEECSSHHHHTT---HHHHHHHHHHCCCEEEEEEECCGGGSSSS--CTTCCCCTTTTTTCSSE
T ss_pred HHHHHHHhh---CCCEEEEECCCcHHHhh---hHHHHHHHHhCCCeEEEeCCCCHHHhccC--CCccccHHHHHhhheeE
Confidence 455555543 34456666678787764 24588888899999999976543321111 11123445555555444
Q ss_pred EEEEcCC----CHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 231 SIRVDGN----DALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 231 ~~~vdg~----d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
...+... ....+.+++++|+.. ...||+.|++-.
T Consensus 133 ~~~v~~~~~~~~~~~i~~~i~~A~~~--~r~GPV~i~iP~ 170 (556)
T 3hww_A 133 SISLPRPTQDIPARWLVSTIDHALGT--LHAGGVHINCPF 170 (556)
T ss_dssp EEECCCCCTTSCHHHHHHHHHHHHHS--CCSSCEEEEEEC
T ss_pred EEecCCCcccccHHHHHHHHHHHHhc--CCCCCEEEeCCc
Confidence 5555422 134588888888732 235899999864
No 89
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=75.79 E-value=6.9 Score=41.31 Aligned_cols=109 Identities=15% Similarity=0.048 Sum_probs=68.0
Q ss_pred cchhhhHHHHhhhcCCCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcC
Q 023827 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (276)
Q Consensus 149 l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (276)
+.+++|++++ ..++++.+--.++. ...|.|..++-..+|+|+++-+....... ..-.....|+. .++..|
T Consensus 67 ~~aaiGAa~a------GaR~~t~Ts~~Gl~--lm~e~l~~~ag~~~P~Vi~va~R~g~~~g-lsi~~~hsd~~-~ar~~G 136 (1231)
T 2c42_A 67 AGAVHGALAA------GALTTTFTASQGLL--LMIPNMYKISGELLPGVFHVTARAIAAHA-LSIFGDHQDIY-AARQTG 136 (1231)
T ss_dssp HHHHHHHHHT------TCCEEEEECHHHHH--HHHHHHHHHHHTTCCCEEEEEECCCCSSS-BCCSCCSHHHH-TTTTSS
T ss_pred HHHHHHHHHc------CChHhhhccHHHHH--HHHHHHHHHhCCCCCEEEEECCCCccCCC-CcCCCchhhHH-HHhcCC
Confidence 4567888876 34566665433443 24577765555678999998877642111 00000111221 255568
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 023827 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKCLSF 269 (276)
Q Consensus 229 ~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 269 (276)
|+++. ..++.+.+..+..|.+.+.+.+-|+++-...+|+
T Consensus 137 ~~vl~--pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~~ 175 (1231)
T 2c42_A 137 FAMLA--SSSVQEAHDMALVAHLAAIESNVPFMHFFDGFRT 175 (1231)
T ss_dssp CEEEE--CCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTTT
T ss_pred cEEEE--CCCHHHHHHHHHHHHHHHHHcCCCEEEEecCccc
Confidence 87664 3588898888888877777788999988877765
No 90
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=71.50 E-value=15 Score=29.65 Aligned_cols=72 Identities=17% Similarity=0.085 Sum_probs=45.5
Q ss_pred CceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCcccccccc------------C---ccCCcchhhhHhhcCc
Q 023827 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS------------D---QFRSDGAVVKGRAYGV 229 (276)
Q Consensus 165 ~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~------------~---~~~~~~~~~~a~a~G~ 229 (276)
..++++++.||..+.+...+++..+...++++..|-.-+.-+...|.. . ......+.++|+.-|.
T Consensus 111 ~~~~ivllTDG~~~~~~~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG 190 (218)
T 3ibs_A 111 VGRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKG 190 (218)
T ss_dssp CCEEEEEEECCTTCCSCHHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEE
T ss_pred CCcEEEEEcCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHhcCC
Confidence 467999999999987767777887777777776665433211000000 0 1122346778888888
Q ss_pred eEEEEcC
Q 023827 230 RSIRVDG 236 (276)
Q Consensus 230 ~~~~vdg 236 (276)
..+.++.
T Consensus 191 ~~~~~~~ 197 (218)
T 3ibs_A 191 IYVRVDN 197 (218)
T ss_dssp EEEEECS
T ss_pred EEEECCC
Confidence 8888864
No 91
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=67.52 E-value=12 Score=37.85 Aligned_cols=107 Identities=10% Similarity=0.055 Sum_probs=60.0
Q ss_pred cccchhhhHHHHhhhcCCCceEEEEECCCcCCcch---HHHHHHHHH-HC--CCCEEEEEEeCCccccccccCccCCcch
Q 023827 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD---FHAALNFSA-VT--EAPVIFICRNNGWAISTPISDQFRSDGA 220 (276)
Q Consensus 147 ~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~---~~Eal~~A~-~~--~Lpvi~vv~nN~~~~~~~~~~~~~~~~~ 220 (276)
..++.|+|+|++ +++.+++.-.-=|.|..+. +-+-++.+. .| ++|+++++...+.+ .++++.+...+++
T Consensus 595 ~~vG~a~G~A~~----G~~~~~i~eaqf~dF~~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~~G-~Gp~Hs~~~~E~~ 669 (868)
T 2yic_A 595 AAVGFEYGYSVG----NPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEG-QGPDHTSGRIERF 669 (868)
T ss_dssp HHHHHHHHHHHH----CTTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCCSS-SCTTSSCCCHHHH
T ss_pred HHHHHHHHHHcc----CCCCceEEEEehHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCC-CChhhcCCcHHHH
Confidence 334566666665 3345555544445565444 333222221 13 67999999865543 4454443323444
Q ss_pred hhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEE
Q 023827 221 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILI 262 (276)
Q Consensus 221 ~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lI 262 (276)
..+..--|+.++.. .|+.+....++.++.. ..++|++|
T Consensus 670 l~l~~~pnm~V~~P--s~p~~~~~lLr~a~~~--~~~~Pvii 707 (868)
T 2yic_A 670 LQLWAEGSMTIAMP--STPANYFHLLRRHGKD--GIQRPLIV 707 (868)
T ss_dssp HHHCCTTSCEEECC--CSHHHHHHHHHHHHHS--SCCCCEEE
T ss_pred HhcCCCCCCEEEEe--CCHHHHHHHHHHHHhc--CCCCcEEE
Confidence 44444457776644 4889999999887752 23489876
No 92
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=66.61 E-value=13 Score=38.88 Aligned_cols=107 Identities=10% Similarity=0.050 Sum_probs=60.6
Q ss_pred cccchhhhHHHHhhhcCCCceEEEEECCCcCCcch---HHHHHHHH---HHCCCCEEEEEEeCCccccccccCccCCcch
Q 023827 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD---FHAALNFS---AVTEAPVIFICRNNGWAISTPISDQFRSDGA 220 (276)
Q Consensus 147 ~~l~~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~---~~Eal~~A---~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~ 220 (276)
..++.|+|+|++ +++.+++.-.-=|.|..+. +-+-++-+ ...++|+++.+...+.+ .++.+.+...+++
T Consensus 840 ~~vg~a~G~A~~----G~~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~~k~~~~~~vv~~lp~G~~G-~G~~Hs~~~~E~~ 914 (1113)
T 2xt6_A 840 AAVGFEYGYSVG----NPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEG-QGPDHTSGRIERF 914 (1113)
T ss_dssp HHHHHHHHHHHH----CTTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCCSS-SCTTSSCCCHHHH
T ss_pred HHHHHHHHHHhc----CCCCceEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCCC-CChhhhcccHHHH
Confidence 344556666665 4355555544445565544 33322222 12267999999865533 4454443323344
Q ss_pred hhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEE
Q 023827 221 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILI 262 (276)
Q Consensus 221 ~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lI 262 (276)
..+..--|+.++.. .|+.+....++.++.+ ..++|++|
T Consensus 915 l~l~~~pnm~V~~P--s~~~~~~~lLr~a~~~--~~~~Pvii 952 (1113)
T 2xt6_A 915 LQLWAEGSMTIAMP--STPANYFHLLRRHGKD--GIQRPLIV 952 (1113)
T ss_dssp HHHCCTTSCEEECC--SSHHHHHHHHHHHHHS--SCCCCEEE
T ss_pred HhcCCCCCcEEEec--CCHHHHHHHHHHHHhc--cCCCCEEE
Confidence 43343347776644 4889999999887752 23589877
No 93
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=62.51 E-value=15 Score=37.62 Aligned_cols=105 Identities=14% Similarity=0.173 Sum_probs=56.2
Q ss_pred cccchhhhHHHHhhhcCCCceE-EE-EECCCcCCcc---hHHHHHHHH-HHC--CCCEEEEEEeCCccccccccCccCCc
Q 023827 147 TQLPHAVGAAYALKMDRKDACA-VT-YFGDGGTSEG---DFHAALNFS-AVT--EAPVIFICRNNGWAISTPISDQFRSD 218 (276)
Q Consensus 147 ~~l~~A~G~A~a~k~~~~~~~v-v~-~~GDG~~~~G---~~~Eal~~A-~~~--~Lpvi~vv~nN~~~~~~~~~~~~~~~ 218 (276)
+.++.|.|+|++- ....+ |. .+|| |..+ .+-+-++.+ +.| ++|+++++.. ++...++.+.+...+
T Consensus 663 ~~vg~a~G~A~~G----~~~lpv~e~qf~d--F~~~AQra~DQii~~~~ak~~~~~~vv~~l~~-G~~g~G~~Hss~~~E 735 (933)
T 2jgd_A 663 AVLAFEYGYATAE----PRTLTIWEAQFGD--FANGAQVVIDQFISSGEQKWGRMCGLVMLLPH-GYEGQGPEHSSARLE 735 (933)
T ss_dssp HHHHHHHHHHHHC----TTSEEEEEC-CGG--GGGGGHHHHHHTTTTHHHHHCCCCCCEEEEEC-CCSSSCTTSSCCCHH
T ss_pred HHHHHHHHHHhcC----CCCCCEEEEEEhh--hhcccHHHHHHHHHHHHHHHccCCCEEEEEeC-CCCCCCcccccchHH
Confidence 3455666666653 33334 32 5655 4333 222222233 334 7799999986 553334443332223
Q ss_pred chhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEE
Q 023827 219 GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILI 262 (276)
Q Consensus 219 ~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lI 262 (276)
++.....--|+.++.. .|+.+....++.+.. +..++|++|
T Consensus 736 ~~l~~~~~pnm~V~~P--st~~e~~~lLr~a~~--~~~~~Pvii 775 (933)
T 2jgd_A 736 RYLQLCAEQNMQVCVP--STPAQVYHMLRRQAL--RGMRRPLVV 775 (933)
T ss_dssp HHHHTCCTTCCEEECC--CSHHHHHHHHHHHHH--SSCCCCEEE
T ss_pred HHHHHhCCCCeEEEec--CCHHHHHHHHHHHHH--hcCCCcEEE
Confidence 3333322246766543 588999888888742 223689988
No 94
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=60.43 E-value=10 Score=28.79 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=28.7
Q ss_pred hcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCE
Q 023827 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPI 260 (276)
Q Consensus 226 a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~ 260 (276)
+.|.-.++..|+|.+++.+|+++.++.+|+..|.+
T Consensus 81 gsgvm~i~f~gddlea~ekalkemirqarkfagtv 115 (170)
T 4hhu_A 81 GSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTV 115 (170)
T ss_dssp TCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceE
Confidence 34666677889999999999999999999886643
No 95
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=51.61 E-value=20 Score=24.17 Aligned_cols=29 Identities=24% Similarity=0.204 Sum_probs=22.5
Q ss_pred EEEcCCCHHHHHHHHHHHHHHhHccCCCE
Q 023827 232 IRVDGNDALAIYSAVHAAREMAIGEGRPI 260 (276)
Q Consensus 232 ~~vdg~d~~~v~~a~~~a~~~~r~~~~P~ 260 (276)
++..|+|.++..+++++.+..+|+..|.+
T Consensus 5 irfrgddleafekalkemirqarkfagtv 33 (85)
T 2kl8_A 5 IRFRGDDLEAFEKALKEMIRQARKFAGTV 33 (85)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTTTCEE
T ss_pred eeecCCcHHHHHHHHHHHHHHHHhhcceE
Confidence 35568889999999998888888776543
No 96
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=43.57 E-value=64 Score=26.12 Aligned_cols=83 Identities=8% Similarity=0.002 Sum_probs=54.0
Q ss_pred EEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccc--------cccCccCCcchhhhHhhcCceEEEEcCCCH
Q 023827 168 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST--------PISDQFRSDGAVVKGRAYGVRSIRVDGNDA 239 (276)
Q Consensus 168 vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~--------~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~ 239 (276)
-+.++|=+..-.+. -.++...++++.+...++...... .........-..+.|+.+|++++.+.. ..
T Consensus 96 kIavvg~~~~~~~~----~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG~~~~~~~A~~~Gl~~vli~s-g~ 170 (196)
T 2q5c_A 96 ELALIAYKHSIVDK----HEIEAMLGVKIKEFLFSSEDEITTLISKVKTENIKIVVSGKTVTDEAIKQGLYGETINS-GE 170 (196)
T ss_dssp EEEEEEESSCSSCH----HHHHHHHTCEEEEEEECSGGGHHHHHHHHHHTTCCEEEECHHHHHHHHHTTCEEEECCC-CH
T ss_pred cEEEEeCcchhhHH----HHHHHHhCCceEEEEeCCHHHHHHHHHHHHHCCCeEEECCHHHHHHHHHcCCcEEEEec-CH
Confidence 45566656665542 346677888887777776543211 011111233456789999999999874 57
Q ss_pred HHHHHHHHHHHHHhHc
Q 023827 240 LAIYSAVHAAREMAIG 255 (276)
Q Consensus 240 ~~v~~a~~~a~~~~r~ 255 (276)
+++..|+++|++-++.
T Consensus 171 eSI~~Ai~eA~~l~~~ 186 (196)
T 2q5c_A 171 ESLRRAIEEALNLIEV 186 (196)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999999876553
No 97
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=39.52 E-value=61 Score=25.75 Aligned_cols=49 Identities=8% Similarity=-0.062 Sum_probs=35.4
Q ss_pred cchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 218 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 218 ~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
..+.+.++.+|+.+....-.+..++.+.+++..++....+.-+++-+..
T Consensus 61 ~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~dh~~~dc~vv~il 109 (167)
T 1pyo_A 61 STLVTLFKLLGYDVHVLCDQTAQEMQEKLQNFAQLPAHRVTDSCIVALL 109 (167)
T ss_dssp HHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHHTCGGGGTSSEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHhhhhhhccCCCEEEEEeC
Confidence 4577889999999988887888999998887654212234567766544
No 98
>2a2p_A Selenoprotein M, SELM protein; redox enzyme, oxidoreductase; NMR {Mus musculus} SCOP: c.47.1.23
Probab=38.23 E-value=21 Score=27.52 Aligned_cols=33 Identities=9% Similarity=0.106 Sum_probs=27.7
Q ss_pred CCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 023827 12 IPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYND 44 (276)
Q Consensus 12 ~~~~~~~~~~g~~~~~~~~~~~~~~~l~~ly~~ 44 (276)
-|.+.++|.+|+.+++....+.+.+++.+++..
T Consensus 56 ~P~LvL~D~~G~e~E~I~Iekw~~d~I~efL~e 88 (129)
T 2a2p_A 56 DPELVLLSRNYQELERIPLSQMTRDEINALVQE 88 (129)
T ss_dssp CCEEEEECSSSCCCEEEECSSSCHHHHHHHHHH
T ss_pred CCEEEEecCCCCEEEEeecccCCHHHHHHHHHH
Confidence 488899999999988777788999998887654
No 99
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=38.09 E-value=67 Score=26.82 Aligned_cols=82 Identities=11% Similarity=-0.053 Sum_probs=51.9
Q ss_pred EEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccc--------cccCccCCcchhhhHhhcCceEEEEcCCCH
Q 023827 168 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST--------PISDQFRSDGAVVKGRAYGVRSIRVDGNDA 239 (276)
Q Consensus 168 vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~--------~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~ 239 (276)
-+.++|=+..-. +.-.++...++++.+...++...... .........-..+.|+.+|++++.+.+ .
T Consensus 108 kIavVg~~~~~~----~~~~i~~ll~~~i~~~~~~~~ee~~~~i~~l~~~G~~vVVG~~~~~~~A~~~Gl~~vlI~s--~ 181 (225)
T 2pju_A 108 SIGVVTYQETIP----ALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYS--A 181 (225)
T ss_dssp CEEEEEESSCCH----HHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEESHHHHHHHHHTTSEEEESSC--H
T ss_pred cEEEEeCchhhh----HHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHcCCcEEEECC--H
Confidence 344444444433 23456677888887777766532210 011112233456789999999999985 6
Q ss_pred HHHHHHHHHHHHHhHc
Q 023827 240 LAIYSAVHAAREMAIG 255 (276)
Q Consensus 240 ~~v~~a~~~a~~~~r~ 255 (276)
+++..|+.+|++-++.
T Consensus 182 eSI~~Ai~eA~~l~~~ 197 (225)
T 2pju_A 182 ATVRQAFSDALDMTRM 197 (225)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999999875543
No 100
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=36.49 E-value=55 Score=26.33 Aligned_cols=69 Identities=12% Similarity=0.018 Sum_probs=40.9
Q ss_pred EEEEEEeCCccccccccC--ccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEE
Q 023827 196 VIFICRNNGWAISTPISD--QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVK 265 (276)
Q Consensus 196 vi~vv~nN~~~~~~~~~~--~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~ 265 (276)
+.+||.|..|.- .+... ......+.+.++.+|+.+....--+..++.+++++..++....+.-+++-+.
T Consensus 45 ~ALIInn~~f~~-~~~R~G~~~Da~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~f~~~~d~~~~d~~v~~~ 115 (178)
T 2h54_A 45 LALIICNEEFDS-IPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTTELEAFAHRPEHKTSDSTFLVF 115 (178)
T ss_dssp EEEEEECCCCSS-SCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTCGGGGGCSCEEEEE
T ss_pred EEEEEehhhcCC-CccCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhhhcCCCCEEEEEE
Confidence 556666666642 11111 1123457788899999999888788899988888754321112334554443
No 101
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=36.44 E-value=1.4e+02 Score=22.96 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=35.1
Q ss_pred CCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcC-CCHHHHHHHHHHHHHHhH
Q 023827 192 TEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG-NDALAIYSAVHAAREMAI 254 (276)
Q Consensus 192 ~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg-~d~~~v~~a~~~a~~~~r 254 (276)
.+.|+++|.+--. . ............++++.+|++.+.+.. .+-..+.+.+....+.++
T Consensus 126 ~~~piilv~nK~D--l--~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 126 RSIPALLLGNKLD--M--AQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp CCCCEEEEEECGG--G--GGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECcc--h--hhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence 3678776664221 1 111112223455677888999999888 666667777766665443
No 102
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=36.23 E-value=90 Score=26.81 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=26.9
Q ss_pred EEEECCCcC--CcchHHHHHHHHHHCCCCEEEEEEe
Q 023827 169 VTYFGDGGT--SEGDFHAALNFSAVTEAPVIFICRN 202 (276)
Q Consensus 169 v~~~GDG~~--~~G~~~Eal~~A~~~~Lpvi~vv~n 202 (276)
++|--||+. ..|.+.-++.+|..++ .+.|+|.+
T Consensus 3 i~ir~Da~~~IG~GHvmRcl~LA~~l~-~v~F~~~~ 37 (282)
T 3hbm_A 3 VLFRSDSSSQIGFGHIKRDLVLAKQYS-DVSFACLP 37 (282)
T ss_dssp EEEEECCBTTTBSHHHHHHHHHHTTCS-SEEEEECC
T ss_pred EEEEEecCCCccccHHHHHHHHHHHHH-hCEEEEec
Confidence 456668887 5788999999999888 99998865
No 103
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=34.61 E-value=1.4e+02 Score=22.45 Aligned_cols=61 Identities=3% Similarity=0.087 Sum_probs=36.9
Q ss_pred CCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccC
Q 023827 193 EAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEG 257 (276)
Q Consensus 193 ~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~ 257 (276)
+.|+++|.+--. . ............+.++.+|++.+.+...+-..+.+.+....+.+.+.+
T Consensus 111 ~~p~ilv~nK~D--l--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 111 QIPIMLVGNKKD--L--HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp -CCEEEEEECTT--C--TTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred CCCEEEEEECcc--c--hhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 568777664221 1 111222234466778889999999988777777777777666554443
No 104
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=34.30 E-value=59 Score=24.33 Aligned_cols=46 Identities=20% Similarity=0.346 Sum_probs=35.2
Q ss_pred hhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHc--cCCCEEEEEEEe
Q 023827 222 VKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIG--EGRPILIEVKCL 267 (276)
Q Consensus 222 ~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~--~~~P~lIe~~t~ 267 (276)
=+...|++.++.+...|+.++.+.+++-++.+-. .+.|++|++...
T Consensus 10 lKG~~~~l~vl~l~~~d~~~l~~~L~~ki~~aP~FF~~aPVVlDl~~l 57 (120)
T 3ghf_A 10 LKGSSFTLSVVHLHEAEPEVIRQALEDKIAQAPAFLKHAPVVINVSGL 57 (120)
T ss_dssp CCCCCCCCEEEEEESCCHHHHHHHHHHHHHHSHHHHTTCEEEEEEEEC
T ss_pred EEcCeeeEEEEEeCCCCHHHHHHHHHHHHHhChHhhCCCcEEEEcccc
Confidence 3566788999999889999999998887765433 356999988644
No 105
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*
Probab=33.91 E-value=51 Score=31.32 Aligned_cols=14 Identities=21% Similarity=0.005 Sum_probs=8.7
Q ss_pred CCEEEEEEeCCccc
Q 023827 194 APVIFICRNNGWAI 207 (276)
Q Consensus 194 Lpvi~vv~nN~~~~ 207 (276)
+|.|-|+.+...+.
T Consensus 168 iP~Isvv~gp~~GG 181 (523)
T 1on3_A 168 VPQIAIIAGPCAGG 181 (523)
T ss_dssp SCEEEEEEEEEESG
T ss_pred CCEEEEEcCCCchH
Confidence 57777776665543
No 106
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}
Probab=33.60 E-value=43 Score=31.78 Aligned_cols=14 Identities=21% Similarity=0.050 Sum_probs=8.6
Q ss_pred CCEEEEEEeCCccc
Q 023827 194 APVIFICRNNGWAI 207 (276)
Q Consensus 194 Lpvi~vv~nN~~~~ 207 (276)
+|.|.|+.+...+.
T Consensus 164 iP~Isvv~gp~~GG 177 (522)
T 1x0u_A 164 IPQITIMAGPAAGG 177 (522)
T ss_dssp SCEEEEECSEEEGG
T ss_pred CcEEEEEcCCCchH
Confidence 57777766665543
No 107
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=32.84 E-value=83 Score=24.68 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=27.2
Q ss_pred ceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeC
Q 023827 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN 203 (276)
Q Consensus 166 ~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN 203 (276)
..+|+.++ ..+.|..+| +-+|...+.||+.+..++
T Consensus 79 D~vva~~~--~~d~Gt~~E-iGyA~algKPVi~l~~~~ 113 (165)
T 2khz_A 79 DVVVAEVT--QPSLGVGYE-LGRAVALGKPILCLFRPQ 113 (165)
T ss_dssp SEEEEECS--SCCHHHHHH-HHHHHHTCSSEEEEECTT
T ss_pred CEEEEECC--CCCCCHHHH-HHHHHHCCCEEEEEEcCC
Confidence 45555554 668888888 889999999999886554
No 108
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=30.37 E-value=52 Score=26.92 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=30.3
Q ss_pred CceEEEEECCCcCC-cchHHHHHHHHH-HCCCCEEEEEEe
Q 023827 165 DACAVTYFGDGGTS-EGDFHAALNFSA-VTEAPVIFICRN 202 (276)
Q Consensus 165 ~~~vv~~~GDG~~~-~G~~~Eal~~A~-~~~Lpvi~vv~n 202 (276)
...+++++|+=.-. ....|| +..|. ..++|||.|-.+
T Consensus 80 Sk~vIllIs~~T~~s~~v~wE-Ie~Ai~~~~~PII~Vy~~ 118 (189)
T 3hyn_A 80 SKNIILFLSSITANSRALREE-MNYGIGTKGLPVIVIYPD 118 (189)
T ss_dssp EEEEEEECCTTCCCCHHHHHH-HHHHTTTTCCCEEEEETT
T ss_pred cCcEEEEEecCccccchhHHH-HHHHHHhcCCcEEEEECC
Confidence 46799999998884 455665 99999 999999998765
No 109
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A
Probab=28.92 E-value=57 Score=31.17 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=7.8
Q ss_pred HHHHHHCCCCEEEEEEeC
Q 023827 186 LNFSAVTEAPVIFICRNN 203 (276)
Q Consensus 186 l~~A~~~~Lpvi~vv~nN 203 (276)
+..|...++|+|.+++..
T Consensus 136 ~e~A~~~~lP~I~l~dSG 153 (548)
T 2bzr_A 136 QELAIKTGRPLIGINDGA 153 (548)
T ss_dssp HHHHHHHTCCEEEEECCC
T ss_pred HHHHHHcCCCEEEEEcCC
Confidence 344444444444444433
No 110
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=28.53 E-value=1.2e+02 Score=24.85 Aligned_cols=82 Identities=11% Similarity=0.060 Sum_probs=45.6
Q ss_pred ceEEEEECCCcCCcchHHHHHHHHHHCCC--CEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcC---CCHH
Q 023827 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEA--PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG---NDAL 240 (276)
Q Consensus 166 ~~vv~~~GDG~~~~G~~~Eal~~A~~~~L--pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg---~d~~ 240 (276)
+.++.+.|.|++.+. . +......++ .++.|+.|+. .....++|+.+|+|++.++- .+.+
T Consensus 5 ki~vl~sG~g~~~~~-~---l~~l~~~~l~~~I~~Vit~~~------------~~~v~~~A~~~gIp~~~~~~~~~~~~~ 68 (212)
T 3av3_A 5 RLAVFASGSGTNFQA-I---VDAAKRGDLPARVALLVCDRP------------GAKVIERAARENVPAFVFSPKDYPSKA 68 (212)
T ss_dssp EEEEECCSSCHHHHH-H---HHHHHTTCCCEEEEEEEESST------------TCHHHHHHHHTTCCEEECCGGGSSSHH
T ss_pred EEEEEEECCcHHHHH-H---HHHHHhCCCCCeEEEEEeCCC------------CcHHHHHHHHcCCCEEEeCcccccchh
Confidence 567788888876432 1 222223333 5666666531 12466789999999997653 2333
Q ss_pred HHHHHHHHHHHHhHccCCCEEEEEEEe
Q 023827 241 AIYSAVHAAREMAIGEGRPILIEVKCL 267 (276)
Q Consensus 241 ~v~~a~~~a~~~~r~~~~P~lIe~~t~ 267 (276)
+..+.+.+.++ .-+|-+|-+.-|
T Consensus 69 ~~~~~~~~~l~----~~~~Dliv~a~y 91 (212)
T 3av3_A 69 AFESEILRELK----GRQIDWIALAGY 91 (212)
T ss_dssp HHHHHHHHHHH----HTTCCEEEESSC
T ss_pred hhHHHHHHHHH----hcCCCEEEEchh
Confidence 33334444443 235766665443
No 111
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=28.49 E-value=74 Score=27.61 Aligned_cols=16 Identities=6% Similarity=-0.294 Sum_probs=8.7
Q ss_pred CCCCEEEEEEeCCccc
Q 023827 192 TEAPVIFICRNNGWAI 207 (276)
Q Consensus 192 ~~Lpvi~vv~nN~~~~ 207 (276)
.++|.|.|+.+..++.
T Consensus 193 ~~vP~Isvv~g~~~GG 208 (285)
T 2f9i_B 193 AGLLYISYLTHPTTGG 208 (285)
T ss_dssp TTCCEEEEEEEEEEHH
T ss_pred CCCCEEEEEeCCccHH
Confidence 3456666665555443
No 112
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=28.16 E-value=1e+02 Score=25.36 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=45.6
Q ss_pred CceEEEEECCCcCCcchHHHHHHHHHHC-CCC--EEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcC---CC
Q 023827 165 DACAVTYFGDGGTSEGDFHAALNFSAVT-EAP--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG---ND 238 (276)
Q Consensus 165 ~~~vv~~~GDG~~~~G~~~Eal~~A~~~-~Lp--vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg---~d 238 (276)
.+.+|.+.|.|+.. +++--+.+. ++| ++.|+.|+.-. .-.++|+.+|+|++.++- .+
T Consensus 8 ~ri~vl~SG~gsnl-----~all~~~~~~~l~~~I~~Visn~~~a------------~~l~~A~~~gIp~~~~~~~~~~~ 70 (209)
T 4ds3_A 8 NRVVIFISGGGSNM-----EALIRAAQAPGFPAEIVAVFSDKAEA------------GGLAKAEAAGIATQVFKRKDFAS 70 (209)
T ss_dssp EEEEEEESSCCHHH-----HHHHHHHTSTTCSEEEEEEEESCTTC------------THHHHHHHTTCCEEECCGGGSSS
T ss_pred ccEEEEEECCcHHH-----HHHHHHHHcCCCCcEEEEEEECCccc------------HHHHHHHHcCCCEEEeCccccCC
Confidence 35778888877664 345445444 354 66677654210 123689999999998763 23
Q ss_pred HHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 239 ALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 239 ~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
.++..+.+.+.++. -+|=+|.+--
T Consensus 71 r~~~d~~~~~~l~~----~~~Dliv~ag 94 (209)
T 4ds3_A 71 KEAHEDAILAALDV----LKPDIICLAG 94 (209)
T ss_dssp HHHHHHHHHHHHHH----HCCSEEEESS
T ss_pred HHHHHHHHHHHHHh----cCCCEEEEec
Confidence 34444444444432 2565555433
No 113
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A
Probab=28.03 E-value=62 Score=30.78 Aligned_cols=14 Identities=14% Similarity=-0.064 Sum_probs=8.9
Q ss_pred CCEEEEEEeCCccc
Q 023827 194 APVIFICRNNGWAI 207 (276)
Q Consensus 194 Lpvi~vv~nN~~~~ 207 (276)
+|.|-||....++.
T Consensus 170 iP~Isvv~G~~~GG 183 (530)
T 3iav_A 170 IPQISLVVGPCAGG 183 (530)
T ss_dssp SCEEEEECSEEEGG
T ss_pred CCEEEEEecCcchH
Confidence 57777776665543
No 114
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=26.92 E-value=1.7e+02 Score=26.03 Aligned_cols=105 Identities=7% Similarity=-0.099 Sum_probs=54.0
Q ss_pred CCceEEEEECCCcCCcchHHHHHHHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcC---ceEEE--Ec---
Q 023827 164 KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG---VRSIR--VD--- 235 (276)
Q Consensus 164 ~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G---~~~~~--vd--- 235 (276)
.|..++++--+|.+ ....|-+..+...++|.++|+.||..-. ...........+.++++.++ ++.+. +.
T Consensus 84 aD~ailVvd~~g~~--~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~ 160 (370)
T 2elf_A 84 SDIAVLCIPPQGLD--AHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSA 160 (370)
T ss_dssp CSEEEEEECTTCCC--HHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTS
T ss_pred CCEEEEEEcCCCCc--HHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEeccccccc
Confidence 35555555422322 2455667788889999977777886544 11000000122334444443 57777 53
Q ss_pred ---CCCHHHHHHHHHHHHHHhHc-----cCCC-EEEEEEEecCCC
Q 023827 236 ---GNDALAIYSAVHAAREMAIG-----EGRP-ILIEVKCLSFSI 271 (276)
Q Consensus 236 ---g~d~~~v~~a~~~a~~~~r~-----~~~P-~lIe~~t~R~~g 271 (276)
+..+.++.+++.+.+...+. ...| .+....+|+..|
T Consensus 161 ~~~g~gi~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~ 205 (370)
T 2elf_A 161 KNPFEGVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTG 205 (370)
T ss_dssp SSTTTTHHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC-
T ss_pred CcCCCCHHHHHHHHHhhccccccCCcccccccccccceeEEEcCC
Confidence 55677777766655432221 2233 444556666543
No 115
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=26.46 E-value=1.2e+02 Score=23.02 Aligned_cols=53 Identities=11% Similarity=0.239 Sum_probs=29.6
Q ss_pred CCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcC---CCHHHHHHHHHHHH
Q 023827 193 EAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG---NDALAIYSAVHAAR 250 (276)
Q Consensus 193 ~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg---~d~~~v~~a~~~a~ 250 (276)
+.|+++|++--.. .. .........++++.+|++.+.+.. .++.++...+.+.+
T Consensus 126 ~~p~ilv~nK~Dl--~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 126 DVPMVLVGNKCDL--PT---RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp CCCEEEEEECTTC--SC---CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCeEEEEEECCcC--Cc---ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6788777642221 10 111223456677778999888864 45666555554443
No 116
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*
Probab=26.28 E-value=51 Score=33.04 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=34.7
Q ss_pred CCceEEEEECCCcCCcchH--------HHHHHHHHHCCCCEEEEEEeCCccc
Q 023827 164 KDACAVTYFGDGGTSEGDF--------HAALNFSAVTEAPVIFICRNNGWAI 207 (276)
Q Consensus 164 ~~~~vv~~~GDG~~~~G~~--------~Eal~~A~~~~Lpvi~vv~nN~~~~ 207 (276)
..+.|+++.-|-.++.|++ ..++.+|...++|+|++++|.+-.+
T Consensus 119 ~Gr~vvVianD~t~~gGS~g~~~~~K~~ra~elA~~~glP~I~l~dsgGARi 170 (793)
T 2x24_A 119 EGRDIILISNDITFRIGSFGPGEDLLYLRASELARAEGIPRVYLAANSGARI 170 (793)
T ss_dssp TCEEEEEEEECSSGGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCC
T ss_pred CCeEEEEEEECCcccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCc
Confidence 3678899999987755543 4578889999999999999888655
No 117
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=25.36 E-value=76 Score=27.22 Aligned_cols=34 Identities=12% Similarity=0.080 Sum_probs=28.4
Q ss_pred cchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHH
Q 023827 218 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAARE 251 (276)
Q Consensus 218 ~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~ 251 (276)
..+.+.++.+|+.+....--+..++.+++++..+
T Consensus 59 ~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~ 92 (272)
T 1m72_A 59 DNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAE 92 (272)
T ss_dssp HHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHH
Confidence 4678888999999998888888999988887653
No 118
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=25.30 E-value=1.5e+02 Score=23.36 Aligned_cols=48 Identities=10% Similarity=-0.053 Sum_probs=34.4
Q ss_pred cchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 218 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 218 ~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
..+.+.++.+|+.+...+-.+..++.+.+++..+. .....-++|-+..
T Consensus 58 ~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~-dh~~~dc~vv~il 105 (164)
T 1qtn_A 58 GALTTTFEELHFEIKPHDDCTVEQIYEILKIYQLM-DHSNMDCFICCIL 105 (164)
T ss_dssp HHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHS-CCTTCSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHHh-hccCCCEEEEEeC
Confidence 45778899999999988888889999999886432 1133456665543
No 119
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=25.25 E-value=1.9e+02 Score=24.78 Aligned_cols=51 Identities=8% Similarity=-0.117 Sum_probs=36.7
Q ss_pred CCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 216 RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 216 ~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
....+.+.++.+|+.+...+--+..++.+.+++..+.....+.-+++-+..
T Consensus 55 D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~dh~~~d~~v~~il 105 (272)
T 3h11_A 55 ETELLRDTFTSLGYEVQKFLHLSMHGISQILGQFACMPEHRDYDSFVCVLV 105 (272)
T ss_dssp CCSHHHHHHHHHTEEEEEEESCBHHHHHHHHHHHHTCGGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHhccccCCCCEEEEEEE
Confidence 356789999999999998888888999999888543211234566665544
No 120
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4
Probab=24.99 E-value=96 Score=29.41 Aligned_cols=13 Identities=15% Similarity=0.100 Sum_probs=6.8
Q ss_pred CCEEEEEEeCCcc
Q 023827 194 APVIFICRNNGWA 206 (276)
Q Consensus 194 Lpvi~vv~nN~~~ 206 (276)
+|.|-||.+...+
T Consensus 171 iP~Isvv~Gp~~G 183 (527)
T 1vrg_A 171 VPQITVIAGPCAG 183 (527)
T ss_dssp SCEEEEEEEEEBG
T ss_pred CCEEEEEeCCCch
Confidence 4555555555443
No 121
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=24.73 E-value=1.2e+02 Score=25.92 Aligned_cols=69 Identities=10% Similarity=0.069 Sum_probs=42.1
Q ss_pred EEEEEEeCCccccc--cccC--ccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEE
Q 023827 196 VIFICRNNGWAIST--PISD--QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVK 265 (276)
Q Consensus 196 vi~vv~nN~~~~~~--~~~~--~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~ 265 (276)
+.+||+|-.|.-.. +... ......+.+.++.+|+.+....--+..++.++++++.+. ...+.-+++-+.
T Consensus 23 ~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~-~h~~~d~~vv~i 95 (278)
T 3od5_A 23 IALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTV-SHADADCFVCVF 95 (278)
T ss_dssp EEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHS-CCTTBSCEEEEE
T ss_pred EEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhh-cccCCCEEEEEE
Confidence 55566555565321 1111 112345788899999999988888899999999986431 112334555443
No 122
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=24.52 E-value=74 Score=26.21 Aligned_cols=82 Identities=9% Similarity=0.088 Sum_probs=43.7
Q ss_pred ceEEEEECCCcCCcchHHHHHHHHHHCCC--CEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCC---CHH
Q 023827 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEA--PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN---DAL 240 (276)
Q Consensus 166 ~~vv~~~GDG~~~~G~~~Eal~~A~~~~L--pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~---d~~ 240 (276)
+++|.+.|.|++.+. . +......++ .++.|+.|+. .....++|+.+|++++.++-. +-+
T Consensus 3 rI~vl~SG~g~~~~~-~---l~~l~~~~~~~~i~~Vvs~~~------------~~~~~~~A~~~gIp~~~~~~~~~~~r~ 66 (216)
T 2ywr_A 3 KIGVLVSGRGSNLQA-I---IDAIESGKVNASIELVISDNP------------KAYAIERCKKHNVECKVIQRKEFPSKK 66 (216)
T ss_dssp EEEEEECSCCHHHHH-H---HHHHHTTSSCEEEEEEEESCT------------TCHHHHHHHHHTCCEEECCGGGSSSHH
T ss_pred EEEEEEeCCcHHHHH-H---HHHHHhCCCCCeEEEEEeCCC------------ChHHHHHHHHcCCCEEEeCcccccchh
Confidence 455666688876432 2 222223345 5666776542 112467899999999976532 323
Q ss_pred HHHHHHHHHHHHhHccCCCEEEEEEEe
Q 023827 241 AIYSAVHAAREMAIGEGRPILIEVKCL 267 (276)
Q Consensus 241 ~v~~a~~~a~~~~r~~~~P~lIe~~t~ 267 (276)
+..+.+.+.++ .-+|-+|-+.-|
T Consensus 67 ~~~~~~~~~l~----~~~~Dliv~a~y 89 (216)
T 2ywr_A 67 EFEERMALELK----KKGVELVVLAGF 89 (216)
T ss_dssp HHHHHHHHHHH----HTTCCEEEESSC
T ss_pred hhhHHHHHHHH----hcCCCEEEEeCc
Confidence 33333333333 235766665444
No 123
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=24.33 E-value=2.4e+02 Score=24.38 Aligned_cols=52 Identities=13% Similarity=-0.035 Sum_probs=32.8
Q ss_pred CceEEEEECCCcCCcchHHHHHHHHHHC-CCC--EEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEc
Q 023827 165 DACAVTYFGDGGTSEGDFHAALNFSAVT-EAP--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (276)
Q Consensus 165 ~~~vv~~~GDG~~~~G~~~Eal~~A~~~-~Lp--vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vd 235 (276)
.+.+|.+.|.|+ ..++|..+.+. .+| +..|+-|+. +...+|+.+|+|++.++
T Consensus 96 ~ri~vl~Sg~g~-----~l~~ll~~~~~g~l~~~i~~Visn~~--------------~~~~~A~~~gIp~~~~~ 150 (292)
T 3lou_A 96 PKVLIMVSKLEH-----CLADLLFRWKMGELKMDIVGIVSNHP--------------DFAPLAAQHGLPFRHFP 150 (292)
T ss_dssp CEEEEEECSCCH-----HHHHHHHHHHHTSSCCEEEEEEESSS--------------TTHHHHHHTTCCEEECC
T ss_pred CEEEEEEcCCCc-----CHHHHHHHHHcCCCCcEEEEEEeCcH--------------HHHHHHHHcCCCEEEeC
Confidence 456666667653 44556655543 354 666776652 23456889999999875
No 124
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=24.03 E-value=1.2e+02 Score=24.44 Aligned_cols=48 Identities=10% Similarity=0.045 Sum_probs=34.1
Q ss_pred cchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 218 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 218 ~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
..+.+.++.+|+.+...+-....++.+.++++.+. ...+.-+++-+..
T Consensus 72 ~~L~~~F~~LGF~V~~~~dlt~~em~~~l~~~~~~-dh~~~dc~vvvil 119 (179)
T 3p45_A 72 DNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTV-SHADADCFVCVFL 119 (179)
T ss_dssp HHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTS-CCTTBSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHhhh-hcCCCCEEEEEEe
Confidence 45788899999999988888899999999886421 1122355555543
No 125
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=23.78 E-value=1.9e+02 Score=24.39 Aligned_cols=49 Identities=6% Similarity=-0.175 Sum_probs=36.7
Q ss_pred chhhhHhhcCceEEEE----c--CCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 023827 219 GAVVKGRAYGVRSIRV----D--GNDALAIYSAVHAAREMAIGEGRPILIEVKCLS 268 (276)
Q Consensus 219 ~~~~~a~a~G~~~~~v----d--g~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 268 (276)
-..+.|+.+|++..+. | ..|..++.+.++++...||+. |-++...+.++
T Consensus 141 ~a~~~A~~~gvp~~~rdvFLD~~~~~~~~I~~ql~~a~~~A~~~-G~aIaIGhp~p 195 (245)
T 2nly_A 141 LIPQLAEELEVPYATRSIFLDNTHSSRKEVIKNMRKLAKKAKQG-SEPIGIGHVGV 195 (245)
T ss_dssp SHHHHHHHTTCCEEECCEESCCTTCCHHHHHHHHHHHHHHHHTT-SCCEEEEECST
T ss_pred HHHHHHHHcCCCeEEeeEECCCCCCCHHHHHHHHHHHHHHHhhc-CcEEEEECCCC
Confidence 3567788999998763 3 468899999999999999865 56666665543
No 126
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=23.51 E-value=62 Score=26.87 Aligned_cols=55 Identities=24% Similarity=0.273 Sum_probs=33.4
Q ss_pred CceEEEEECCCcCCcchHHHHHHHHHHC-CC--CEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcC
Q 023827 165 DACAVTYFGDGGTSEGDFHAALNFSAVT-EA--PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 236 (276)
Q Consensus 165 ~~~vv~~~GDG~~~~G~~~Eal~~A~~~-~L--pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg 236 (276)
.+.+|.+.|.|+.. +++.-+... ++ .++.|+.|+.-. .-.++|+.+|+|++.++-
T Consensus 9 ~ri~vl~SG~gsnl-----~all~~~~~~~~~~~I~~Vis~~~~a------------~~l~~A~~~gIp~~~~~~ 66 (215)
T 3kcq_A 9 LRVGVLISGRGSNL-----EALAKAFSTEESSVVISCVISNNAEA------------RGLLIAQSYGIPTFVVKR 66 (215)
T ss_dssp EEEEEEESSCCHHH-----HHHHHHTCCC-CSEEEEEEEESCTTC------------THHHHHHHTTCCEEECCB
T ss_pred CEEEEEEECCcHHH-----HHHHHHHHcCCCCcEEEEEEeCCcch------------HHHHHHHHcCCCEEEeCc
Confidence 46778888887764 334444433 34 466677654210 123678999999998764
No 127
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}
Probab=22.85 E-value=98 Score=29.45 Aligned_cols=15 Identities=13% Similarity=-0.039 Sum_probs=10.4
Q ss_pred CCEEEEEEeCCcccc
Q 023827 194 APVIFICRNNGWAIS 208 (276)
Q Consensus 194 Lpvi~vv~nN~~~~~ 208 (276)
+|.|-||.+...+..
T Consensus 178 iP~Isvv~Gp~~GG~ 192 (531)
T 3n6r_B 178 VPQISMIMGPCAGGA 192 (531)
T ss_dssp SCEEEEECSCCBGGG
T ss_pred CCEEEEEeCCcchHH
Confidence 588888877766543
No 128
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=22.74 E-value=66 Score=25.21 Aligned_cols=34 Identities=9% Similarity=0.101 Sum_probs=26.9
Q ss_pred CceEEEEECCCcCCcchHHHHHHHHHHCCCCEEE
Q 023827 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF 198 (276)
Q Consensus 165 ~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~ 198 (276)
-++.+.++|.|....+...|...+|.+.++|++.
T Consensus 34 AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~ 67 (170)
T 3cf4_G 34 AKRPLLMVGTLALDPELLDRVVKISKAANIPIAA 67 (170)
T ss_dssp CSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEE
T ss_pred CCCCEEEECCCccchhHHHHHHHHHHHhCCCEEE
Confidence 3567888898888776677777899999999853
No 129
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=22.70 E-value=1.5e+02 Score=24.46 Aligned_cols=81 Identities=11% Similarity=0.065 Sum_probs=44.6
Q ss_pred ceEEEEECCCcCCcchHHHHHHHHHHCCC--CEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCC---CHH
Q 023827 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEA--PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN---DAL 240 (276)
Q Consensus 166 ~~vv~~~GDG~~~~G~~~Eal~~A~~~~L--pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~---d~~ 240 (276)
+.+|.+.|.|+.. +++--+.+.++ .++.|+.|+.- ..-.++|+.+|++++.++-. +-.
T Consensus 7 riavl~SG~Gsnl-----~all~~~~~~~~~eI~~Vis~~~~------------a~~~~~A~~~gIp~~~~~~~~~~~r~ 69 (215)
T 3tqr_A 7 PIVVLISGNGTNL-----QAIIGAIQKGLAIEIRAVISNRAD------------AYGLKRAQQADIPTHIIPHEEFPSRT 69 (215)
T ss_dssp EEEEEESSCCHHH-----HHHHHHHHTTCSEEEEEEEESCTT------------CHHHHHHHHTTCCEEECCGGGSSSHH
T ss_pred EEEEEEeCCcHHH-----HHHHHHHHcCCCCEEEEEEeCCcc------------hHHHHHHHHcCCCEEEeCccccCchh
Confidence 4566666776553 44555555445 46667766420 11236799999999987532 223
Q ss_pred HHHHHHHHHHHHhHccCCCEEEEEEEe
Q 023827 241 AIYSAVHAAREMAIGEGRPILIEVKCL 267 (276)
Q Consensus 241 ~v~~a~~~a~~~~r~~~~P~lIe~~t~ 267 (276)
+..+.+.+.++ .-+|=+|.+.-|
T Consensus 70 ~~d~~~~~~l~----~~~~Dliv~agy 92 (215)
T 3tqr_A 70 DFESTLQKTID----HYDPKLIVLAGF 92 (215)
T ss_dssp HHHHHHHHHHH----TTCCSEEEESSC
T ss_pred HhHHHHHHHHH----hcCCCEEEEccc
Confidence 33334444443 235666655433
No 130
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=22.67 E-value=1.1e+02 Score=25.77 Aligned_cols=34 Identities=6% Similarity=-0.110 Sum_probs=28.5
Q ss_pred cchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHH
Q 023827 218 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAARE 251 (276)
Q Consensus 218 ~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~ 251 (276)
..+.+.++.+|+.+....--+..++.+++++..+
T Consensus 44 ~~l~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~ 77 (250)
T 2j32_A 44 ANLRETFRNLKYEVRNKNDLTREEIVELMRDVSK 77 (250)
T ss_dssp HHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 4577888999999998888888999998887654
No 131
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=22.63 E-value=1.5e+02 Score=25.32 Aligned_cols=47 Identities=9% Similarity=-0.029 Sum_probs=34.7
Q ss_pred hhhhHhhcCceEEEEc-----CCCHHHHHHHHHHHHHHhHccCCCEEEEEEEe
Q 023827 220 AVVKGRAYGVRSIRVD-----GNDALAIYSAVHAAREMAIGEGRPILIEVKCL 267 (276)
Q Consensus 220 ~~~~a~a~G~~~~~vd-----g~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~ 267 (276)
..+.|+.+|+++.+.| ..|..++.+-++++...||+. |-.+...+.+
T Consensus 169 a~~~A~~~gvp~~~rdvFLD~~~~~~~I~~qL~~a~~~Ar~~-G~AIaIGhp~ 220 (261)
T 2qv5_A 169 SGGIAKAISAPQGFADVLLDGEVTEASILRKLDDLERIARRN-GQAIGVASAF 220 (261)
T ss_dssp HHHHHHHHTCCEEECSEETTSSCSHHHHHHHHHHHHHHHHHH-SEEEEEEECC
T ss_pred HHHHHHHcCCCeEEeeeecCCCCCHHHHHHHHHHHHHHHHhc-CcEEEEeCCC
Confidence 5567888999988742 467889999999998888865 5555555443
No 132
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=22.50 E-value=1.7e+02 Score=21.53 Aligned_cols=54 Identities=9% Similarity=0.189 Sum_probs=30.1
Q ss_pred CCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcC---CCHHHHHHHHHHHH
Q 023827 193 EAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG---NDALAIYSAVHAAR 250 (276)
Q Consensus 193 ~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg---~d~~~v~~a~~~a~ 250 (276)
+.|+++|.+--.. +.............++.+|++.+.+.. .++.++...+.+.+
T Consensus 109 ~~p~ilv~nK~Dl----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 109 DLPVILVGNKSDL----ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp CCCEEEEEECTTC----GGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCEEEEeeCcch----hhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHH
Confidence 6788877643221 111222233455678888999998864 45555555444433
No 133
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=22.33 E-value=1.3e+02 Score=23.25 Aligned_cols=48 Identities=8% Similarity=-0.073 Sum_probs=33.8
Q ss_pred cchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 218 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 218 ~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
..+.+.++.+|+.+....-.+..++.+.+++..+.- ..+.-+++-+..
T Consensus 44 ~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~d-h~~~dc~vv~il 91 (146)
T 2dko_A 44 ANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKED-HSKRSSFVCVLL 91 (146)
T ss_dssp HHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHSC-CTTEEEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHHhh-cCCCCeEEEEec
Confidence 457788999999999888788899999888765421 122345555543
No 134
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=21.97 E-value=2.1e+02 Score=26.20 Aligned_cols=60 Identities=18% Similarity=0.160 Sum_probs=34.0
Q ss_pred HHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEE
Q 023827 188 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPIL 261 (276)
Q Consensus 188 ~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~l 261 (276)
.|+..++|.++|+-.+. ...-.+..++||.+++.+++.+ ...++.+.+.+.+++.++..+
T Consensus 193 aAa~~Gl~~~IvmP~~~------------s~~k~~~~r~~GAeVv~v~~~~--~~~~a~~~a~el~~~~~~~~~ 252 (430)
T 4aec_A 193 IAASRGYRLILTMPASM------------SMERRVLLKAFGAELVLTDPAK--GMTGAVQKAEEILKNTPDAYM 252 (430)
T ss_dssp HHHHHTCEEEEEEETTS------------CHHHHHHHHHTTCEEEEECGGG--HHHHHHHHHHHHHHHSTTEEE
T ss_pred HHHHhCCEEEEEEcCCC------------CHHHHHHHHHCCCEEEEECCCC--ChHHHHHHHHHHHHhcCCcEE
Confidence 45668999888875431 1112346788999999887432 233344445544444334333
No 135
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=21.96 E-value=2.7e+02 Score=21.32 Aligned_cols=57 Identities=5% Similarity=0.123 Sum_probs=32.9
Q ss_pred CCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHh
Q 023827 193 EAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMA 253 (276)
Q Consensus 193 ~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~ 253 (276)
+.|+++|++--. . .............+++.+|++.+.+...+-..+.+.+....+.+
T Consensus 129 ~~piilv~nK~D--l--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 185 (201)
T 3oes_A 129 RVPVVLVGNKAD--L--SPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185 (201)
T ss_dssp CCCEEEEEECTT--C--GGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcc--C--ccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 568776664222 1 11112222345567788899999998766666666655554443
No 136
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=21.87 E-value=1.2e+02 Score=24.41 Aligned_cols=41 Identities=24% Similarity=0.454 Sum_probs=31.1
Q ss_pred chhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEE
Q 023827 219 GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (276)
Q Consensus 219 ~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe 263 (276)
..+--|+|||...+...+.| ..+.+.++...++ -+||..||
T Consensus 23 HV~LtARAfGA~~iil~~~D-~~v~esv~dV~~r---wGG~F~ve 63 (178)
T 2o3a_A 23 HVALTARAFGAKGIYFDTED-KSVFESVRDVVER---WGGDFFIK 63 (178)
T ss_dssp HHHHHHHHTTCSEEEESSCC-HHHHHHHHHHHHH---HCSCCEEE
T ss_pred HHHHHHHHhCCCeeEEeCCC-HHHHHHHHHHHHh---cCCceEEE
Confidence 35567899999999999987 4666677666553 57887777
No 137
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=21.75 E-value=2e+02 Score=24.48 Aligned_cols=49 Identities=6% Similarity=-0.172 Sum_probs=34.4
Q ss_pred CcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 023827 217 SDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEVKC 266 (276)
Q Consensus 217 ~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 266 (276)
...+.+.++.+|+.+....--+..++.+++++..+.. ..+.-+++-+..
T Consensus 48 ~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~-h~~~D~~vv~il 96 (277)
T 1nw9_B 48 CEKLRRRFSSLHFMVEVKGDLTAKKMVLALLELARQD-HGALDCCVVVIL 96 (277)
T ss_dssp HHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHHHSC-CTTCSEEEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhh-cccCCeEEEEEe
Confidence 3467788899999998888788899999998765421 123456655543
No 138
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=21.10 E-value=1.2e+02 Score=25.76 Aligned_cols=55 Identities=4% Similarity=0.025 Sum_probs=34.7
Q ss_pred EEEEEEeCCcccc-ccc--cCccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHH
Q 023827 196 VIFICRNNGWAIS-TPI--SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAR 250 (276)
Q Consensus 196 vi~vv~nN~~~~~-~~~--~~~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~ 250 (276)
+.+||+|..|... .+. ........+.+.++.+|+.+....--+..++.+++++..
T Consensus 22 ~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~ 79 (259)
T 3sir_A 22 MALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVYKDCRYKDILRTIEYSA 79 (259)
T ss_dssp EEEEEEECCC-----------CCHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHHHH
T ss_pred EEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 4556666566432 111 111223567888899999999888788899999888754
No 139
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=20.91 E-value=1e+02 Score=27.04 Aligned_cols=56 Identities=13% Similarity=0.120 Sum_probs=36.7
Q ss_pred EEEEEEeCCcccc-ccccC--ccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHH
Q 023827 196 VIFICRNNGWAIS-TPISD--QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAARE 251 (276)
Q Consensus 196 vi~vv~nN~~~~~-~~~~~--~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~ 251 (276)
+.+||.|..|... .+... ......+.+.++.+|+.+....-.+..++.+++++..+
T Consensus 62 ~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~ 120 (310)
T 2nn3_C 62 MAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAE 120 (310)
T ss_dssp EEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHS
T ss_pred EEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHH
Confidence 5555555556532 11111 11234678888999999998888888999998887653
No 140
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=20.79 E-value=1.3e+02 Score=26.19 Aligned_cols=34 Identities=12% Similarity=0.013 Sum_probs=28.3
Q ss_pred cchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHH
Q 023827 218 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAARE 251 (276)
Q Consensus 218 ~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~ 251 (276)
..+.+.++.+|+.+....--+..++.+++++..+
T Consensus 85 ~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 85 TGMTMLLQNLGYSVDVKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp HHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHh
Confidence 4578888999999998888889999999888543
No 141
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=20.71 E-value=91 Score=25.02 Aligned_cols=33 Identities=6% Similarity=-0.154 Sum_probs=21.2
Q ss_pred EEEEECCCcCCcchHHHHHHHHHHCCCCEEEEE
Q 023827 168 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC 200 (276)
Q Consensus 168 vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv 200 (276)
++.+.||+....+...+++..+...++.+.+|-
T Consensus 110 iil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig 142 (192)
T 2x5n_A 110 VAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIH 142 (192)
T ss_dssp EEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEE
T ss_pred EEEEECCCCCCchhHHHHHHHHHHCCCEEEEEE
Confidence 455556664455666777777777887766554
No 142
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=20.62 E-value=3.8e+02 Score=22.91 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=26.0
Q ss_pred HHHHHCCCCEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcCCC
Q 023827 187 NFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGND 238 (276)
Q Consensus 187 ~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg~d 238 (276)
..|+..++|.++++-.+. ....-.+..++||.+++.+++..
T Consensus 89 ~~a~~~G~~~~iv~p~~~-----------~~~~k~~~~~~~GA~v~~~~~~~ 129 (325)
T 1j0a_A 89 LAAKKLGLDAILVLRGKE-----------ELKGNYLLDKIMGIETRVYDAKD 129 (325)
T ss_dssp HHHHHTTCEEEEEEESCC-----------CSCHHHHHHHHTTCEEEEESCCS
T ss_pred HHHHHhCCcEEEEECCCC-----------CCCchHHHHHHCCCEEEEeCcch
Confidence 344568889888886543 01123346778888888887643
No 143
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=20.38 E-value=1.5e+02 Score=24.41 Aligned_cols=80 Identities=20% Similarity=0.078 Sum_probs=44.5
Q ss_pred ceEEEEECCCcCCcchHHHHHHHHHHCCC--CEEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEcC---CCHH
Q 023827 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEA--PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG---NDAL 240 (276)
Q Consensus 166 ~~vv~~~GDG~~~~G~~~Eal~~A~~~~L--pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdg---~d~~ 240 (276)
+++|.+.|.|+. .+++--+...++ .++.|+.|+. . ...++|+.+|+|++.++- .+-+
T Consensus 14 ri~vl~SG~gsn-----l~all~~~~~~~~~eI~~Vis~~~-a------------~~~~~A~~~gIp~~~~~~~~~~~r~ 75 (215)
T 3da8_A 14 RLVVLASGTGSL-----LRSLLDAAVGDYPARVVAVGVDRE-C------------RAAEIAAEASVPVFTVRLADHPSRD 75 (215)
T ss_dssp EEEEEESSCCHH-----HHHHHHHSSTTCSEEEEEEEESSC-C------------HHHHHHHHTTCCEEECCGGGSSSHH
T ss_pred EEEEEEeCChHH-----HHHHHHHHhccCCCeEEEEEeCCc-h------------HHHHHHHHcCCCEEEeCcccccchh
Confidence 455555676654 344544433245 4666666543 1 135689999999998852 2333
Q ss_pred HHHHHHHHHHHHhHccCCCEEEEEEEe
Q 023827 241 AIYSAVHAAREMAIGEGRPILIEVKCL 267 (276)
Q Consensus 241 ~v~~a~~~a~~~~r~~~~P~lIe~~t~ 267 (276)
+..+.+.+.++ .-+|=+|.+--|
T Consensus 76 ~~d~~~~~~l~----~~~~Dlivlagy 98 (215)
T 3da8_A 76 AWDVAITAATA----AHEPDLVVSAGF 98 (215)
T ss_dssp HHHHHHHHHHH----TTCCSEEEEEEC
T ss_pred hhhHHHHHHHH----hhCCCEEEEcCc
Confidence 44444444443 246766666555
No 144
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=20.14 E-value=1.1e+02 Score=26.77 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=37.1
Q ss_pred EEEEEEeCCcccccccc--C--ccCCcchhhhHhhcCceEEEEcCCCHHHHHHHHHHHHH
Q 023827 196 VIFICRNNGWAISTPIS--D--QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAARE 251 (276)
Q Consensus 196 vi~vv~nN~~~~~~~~~--~--~~~~~~~~~~a~a~G~~~~~vdg~d~~~v~~a~~~a~~ 251 (276)
+.+||.|..|.-..... . ......+.+.++.+|+.+....--+..++.+++++..+
T Consensus 71 ~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~ 130 (305)
T 1f1j_A 71 KCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASE 130 (305)
T ss_dssp EEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTEEEEEEESCCHHHHHHHHHHHHH
T ss_pred EEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHH
Confidence 45555555565322111 1 11234577888999999998888889999999988654
No 145
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=20.08 E-value=4.3e+02 Score=22.88 Aligned_cols=52 Identities=8% Similarity=-0.063 Sum_probs=33.7
Q ss_pred CceEEEEECCCcCCcchHHHHHHHHHHCC-CC--EEEEEEeCCccccccccCccCCcchhhhHhhcCceEEEEc
Q 023827 165 DACAVTYFGDGGTSEGDFHAALNFSAVTE-AP--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (276)
Q Consensus 165 ~~~vv~~~GDG~~~~G~~~Eal~~A~~~~-Lp--vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vd 235 (276)
.+++|...|.|+ ..++|..+.+.+ +| +..|+.|+. +...+|+.+|+|+..++
T Consensus 106 ~ri~vl~Sg~g~-----nl~~ll~~~~~g~l~~~I~~Visn~~--------------~~~~~A~~~gIp~~~~~ 160 (302)
T 3o1l_A 106 KRVVLMASRESH-----CLADLLHRWHSDELDCDIACVISNHQ--------------DLRSMVEWHDIPYYHVP 160 (302)
T ss_dssp CEEEEEECSCCH-----HHHHHHHHHHTTCSCSEEEEEEESSS--------------TTHHHHHTTTCCEEECC
T ss_pred cEEEEEEeCCch-----hHHHHHHHHHCCCCCcEEEEEEECcH--------------HHHHHHHHcCCCEEEcC
Confidence 456666677654 445666665543 54 666776652 24467899999999884
Done!