Query 023828
Match_columns 276
No_of_seqs 158 out of 1187
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 06:56:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023828.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023828hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02757 sirohydrochlorine fer 100.0 2.2E-34 4.7E-39 246.1 18.2 151 117-267 4-154 (154)
2 PRK00923 sirohydrochlorin coba 99.9 3.1E-27 6.8E-32 193.7 13.8 119 126-244 1-126 (126)
3 cd03415 CbiX_CbiC Archaeal sir 99.9 5.2E-27 1.1E-31 194.3 13.8 117 127-244 1-125 (125)
4 PRK02395 hypothetical protein; 99.9 1E-26 2.3E-31 214.9 12.1 144 127-274 2-157 (279)
5 cd03414 CbiX_SirB_C Sirohydroc 99.9 1.2E-25 2.6E-30 181.2 14.6 116 127-244 1-116 (117)
6 PRK05782 bifunctional sirohydr 99.9 4.3E-24 9.3E-29 202.5 15.2 124 123-247 3-134 (335)
7 PF01903 CbiX: CbiX; InterPro 99.9 9.5E-25 2.1E-29 172.7 6.9 105 134-239 1-105 (105)
8 COG2138 Sirohydrochlorin ferro 99.9 8.2E-24 1.8E-28 193.1 11.1 145 126-274 2-146 (245)
9 cd03416 CbiX_SirB_N Sirohydroc 99.9 4.9E-23 1.1E-27 162.2 13.2 101 128-228 1-101 (101)
10 cd03412 CbiK_N Anaerobic cobal 99.8 2E-20 4.4E-25 154.8 13.9 114 127-243 1-125 (127)
11 PRK02395 hypothetical protein; 99.8 1E-19 2.2E-24 168.4 14.5 123 123-249 132-264 (279)
12 cd03413 CbiK_C Anaerobic cobal 99.7 4.4E-18 9.5E-23 136.5 8.5 85 127-214 1-86 (103)
13 cd03409 Chelatase_Class_II Cla 99.7 6E-17 1.3E-21 126.4 11.1 87 128-214 1-88 (101)
14 PRK00035 hemH ferrochelatase; 99.7 1.7E-16 3.6E-21 149.8 13.8 144 130-274 64-211 (333)
15 PF06180 CbiK: Cobalt chelatas 99.6 6.4E-16 1.4E-20 142.6 10.5 137 127-268 1-156 (262)
16 PF06180 CbiK: Cobalt chelatas 99.5 2E-14 4.3E-19 132.7 6.4 119 124-245 139-261 (262)
17 COG4822 CbiK Cobalamin biosynt 99.3 5.1E-12 1.1E-16 113.3 8.3 141 125-270 1-154 (265)
18 COG4822 CbiK Cobalamin biosynt 99.3 9.2E-11 2E-15 105.3 15.0 123 124-249 135-261 (265)
19 PRK12435 ferrochelatase; Provi 99.2 7E-10 1.5E-14 104.8 15.9 114 159-273 79-195 (311)
20 cd00419 Ferrochelatase_C Ferro 99.2 3.9E-10 8.4E-15 94.5 11.7 105 124-228 16-135 (135)
21 PRK00035 hemH ferrochelatase; 99.1 1.2E-09 2.7E-14 103.1 15.0 122 125-247 188-325 (333)
22 PF00762 Ferrochelatase: Ferro 99.1 2.7E-10 5.9E-15 107.7 9.4 129 145-274 75-206 (316)
23 TIGR00109 hemH ferrochelatase. 99.1 1.8E-09 3.8E-14 102.3 14.7 119 143-264 74-199 (322)
24 COG2138 Sirohydrochlorin ferro 99.1 6.1E-10 1.3E-14 102.1 10.3 115 128-247 127-242 (245)
25 COG0276 HemH Protoheme ferro-l 99.0 7E-09 1.5E-13 98.3 14.7 123 143-267 73-198 (320)
26 PLN02449 ferrochelatase 99.0 3.7E-09 8.1E-14 105.1 12.8 141 133-274 153-299 (485)
27 TIGR00109 hemH ferrochelatase. 98.6 1.2E-06 2.7E-11 83.0 14.7 120 126-245 188-321 (322)
28 cd03411 Ferrochelatase_N Ferro 98.5 7.8E-07 1.7E-11 76.1 9.6 97 132-229 60-158 (159)
29 PLN02449 ferrochelatase 98.1 6.2E-05 1.3E-09 75.3 14.8 124 124-247 274-415 (485)
30 PRK12435 ferrochelatase; Provi 98.1 6.6E-05 1.4E-09 71.2 14.0 122 125-247 173-309 (311)
31 PF00762 Ferrochelatase: Ferro 98.0 3.9E-05 8.5E-10 72.8 11.0 121 125-245 182-316 (316)
32 KOG1321 Protoheme ferro-lyase 97.7 0.00097 2.1E-08 63.6 13.8 144 131-275 97-250 (395)
33 COG0276 HemH Protoheme ferro-l 97.1 0.0099 2.1E-07 56.9 13.5 122 124-245 182-318 (320)
34 KOG1321 Protoheme ferro-lyase 87.3 4.1 8.9E-05 39.5 9.1 121 124-247 225-362 (395)
35 PF03808 Glyco_tran_WecB: Glyc 80.6 7.8 0.00017 33.3 7.3 40 204-243 60-99 (172)
36 TIGR00696 wecB_tagA_cpsF bacte 70.5 23 0.00051 30.9 7.7 16 207-222 63-78 (177)
37 COG1748 LYS9 Saccharopine dehy 63.0 31 0.00067 34.1 7.7 53 219-275 115-167 (389)
38 COG0133 TrpB Tryptophan syntha 60.6 34 0.00074 33.5 7.2 76 189-265 155-237 (396)
39 cd06353 PBP1_BmpA_Med_like Per 57.7 1.1E+02 0.0024 27.7 9.9 89 128-231 3-94 (258)
40 TIGR02990 ectoine_eutA ectoine 57.2 76 0.0017 29.0 8.8 99 146-261 89-190 (239)
41 PF04198 Sugar-bind: Putative 54.9 1.5E+02 0.0033 27.1 10.4 121 140-266 33-157 (255)
42 PRK05926 hypothetical protein; 53.3 1.7E+02 0.0037 28.5 11.0 86 126-215 115-219 (370)
43 COG4837 Uncharacterized protei 53.1 75 0.0016 25.7 6.9 64 139-202 23-86 (106)
44 COG1964 Predicted Fe-S oxidore 50.9 1.8E+02 0.0039 29.6 10.7 70 142-217 93-166 (475)
45 PF14606 Lipase_GDSL_3: GDSL-l 50.7 45 0.00097 29.5 5.9 79 150-230 26-105 (178)
46 PLN02428 lipoic acid synthase 49.0 2.7E+02 0.0058 27.2 11.5 99 141-244 164-274 (349)
47 cd06533 Glyco_transf_WecG_TagA 48.3 49 0.0011 28.4 5.7 13 210-222 64-76 (171)
48 PF07315 DUF1462: Protein of u 47.5 20 0.00044 28.5 2.9 68 139-206 16-83 (93)
49 PF02608 Bmp: Basic membrane p 47.0 2.4E+02 0.0052 26.2 10.9 91 129-231 4-98 (306)
50 COG2390 DeoR Transcriptional r 45.2 2.9E+02 0.0063 26.6 13.4 140 123-269 78-223 (321)
51 PF01422 zf-NF-X1: NF-X1 type 43.6 11 0.00024 21.9 0.7 9 22-30 7-15 (20)
52 cd01837 SGNH_plant_lipase_like 43.3 28 0.00061 32.3 3.7 55 173-227 166-243 (315)
53 PLN02618 tryptophan synthase, 42.8 1.5E+02 0.0032 29.5 8.8 83 177-264 162-252 (410)
54 PF01012 ETF: Electron transfe 42.5 2E+02 0.0043 23.9 10.5 108 129-241 3-113 (164)
55 PRK02261 methylaspartate mutas 41.6 2.1E+02 0.0045 23.8 11.9 107 126-243 3-110 (137)
56 PRK08207 coproporphyrinogen II 40.9 4E+02 0.0087 27.0 12.2 103 126-228 218-333 (488)
57 cd03174 DRE_TIM_metallolyase D 40.9 2.4E+02 0.0052 25.0 9.2 88 127-219 89-191 (265)
58 COG1922 WecG Teichoic acid bio 40.8 78 0.0017 29.6 6.1 52 207-267 123-175 (253)
59 KOG3672 Histidine acid phospha 38.5 19 0.00042 35.8 1.8 92 33-139 16-108 (487)
60 PRK13463 phosphatase PhoE; Pro 38.5 2.4E+02 0.0053 24.4 8.7 39 223-264 115-154 (203)
61 PF12048 DUF3530: Protein of u 38.0 77 0.0017 30.0 5.8 33 232-264 171-203 (310)
62 PF08029 HisG_C: HisG, C-termi 36.0 39 0.00085 25.6 2.8 24 170-193 49-72 (75)
63 PRK05660 HemN family oxidoredu 33.9 4.4E+02 0.0096 25.4 10.8 88 126-215 58-155 (378)
64 PRK09627 oorA 2-oxoglutarate-a 32.9 4.7E+02 0.01 25.6 10.4 61 126-193 274-334 (375)
65 TIGR00510 lipA lipoate synthas 32.5 2.2E+02 0.0047 27.1 7.9 10 254-263 210-219 (302)
66 cd00006 PTS_IIA_man PTS_IIA, P 31.8 1.1E+02 0.0023 24.6 5.0 25 128-156 2-26 (122)
67 cd01846 fatty_acyltransferase_ 30.6 1.1E+02 0.0023 27.4 5.3 53 173-225 133-204 (270)
68 PRK08898 coproporphyrinogen II 30.3 5.2E+02 0.011 25.1 12.5 100 126-227 73-182 (394)
69 PRK05481 lipoyl synthase; Prov 30.3 4.6E+02 0.0099 24.5 10.0 91 143-238 180-283 (289)
70 PF13684 Dak1_2: Dihydroxyacet 30.2 2.1E+02 0.0046 27.2 7.4 58 124-193 94-151 (313)
71 smart00438 ZnF_NFX Repressor o 30.1 25 0.00053 21.7 0.7 10 22-31 7-16 (26)
72 COG2885 OmpA Outer membrane pr 29.3 3.7E+02 0.0079 23.0 8.6 74 196-270 89-171 (190)
73 COG3384 Aromatic ring-opening 29.3 5E+02 0.011 24.6 10.3 30 128-157 10-44 (268)
74 TIGR01091 upp uracil phosphori 29.3 1.2E+02 0.0027 26.8 5.4 43 172-223 137-179 (207)
75 PRK08445 hypothetical protein; 29.1 4.5E+02 0.0097 25.3 9.5 119 127-247 91-226 (348)
76 COG1744 Med Uncharacterized AB 28.9 5.3E+02 0.011 24.8 12.6 96 124-230 33-133 (345)
77 PRK03692 putative UDP-N-acetyl 28.8 2.4E+02 0.0052 25.9 7.3 53 162-219 107-160 (243)
78 COG0406 phoE Broad specificity 28.7 3.6E+02 0.0078 23.0 8.1 32 233-264 124-156 (208)
79 PRK14484 phosphotransferase ma 28.6 1.7E+02 0.0036 24.3 5.6 36 127-167 2-37 (124)
80 PRK09057 coproporphyrinogen II 28.4 1.8E+02 0.0038 28.2 6.6 97 126-223 55-160 (380)
81 PF03610 EIIA-man: PTS system 27.7 2.6E+02 0.0056 22.0 6.5 24 128-155 1-24 (116)
82 cd00954 NAL N-Acetylneuraminic 26.5 4.8E+02 0.01 24.0 9.0 90 127-221 37-131 (288)
83 COG0621 MiaB 2-methylthioadeni 26.3 2.3E+02 0.005 28.6 7.1 66 173-239 178-250 (437)
84 cd06312 PBP1_ABC_sugar_binding 26.0 2.7E+02 0.0058 24.3 6.9 18 175-192 48-65 (271)
85 PRK00129 upp uracil phosphorib 25.8 1.8E+02 0.004 25.7 5.8 42 172-222 139-180 (209)
86 COG1707 ACT domain-containing 25.7 2.2E+02 0.0047 25.6 6.0 106 126-238 83-188 (218)
87 PRK05481 lipoyl synthase; Prov 25.3 3.1E+02 0.0067 25.6 7.5 10 254-263 199-208 (289)
88 COG2266 GTP:adenosylcobinamide 24.7 3.7E+02 0.0081 23.9 7.4 87 141-242 26-112 (177)
89 PF12695 Abhydrolase_5: Alpha/ 24.3 1.6E+02 0.0035 22.7 4.7 59 129-193 1-68 (145)
90 cd01575 PBP1_GntR Ligand-bindi 24.2 4.5E+02 0.0097 22.5 7.9 54 138-193 11-64 (268)
91 cd06282 PBP1_GntR_like_2 Ligan 24.1 3.5E+02 0.0075 23.1 7.2 18 175-192 46-63 (266)
92 TIGR03455 HisG_C-term ATP phos 23.8 86 0.0019 24.9 3.0 24 170-193 73-96 (100)
93 COG0540 PyrB Aspartate carbamo 23.7 37 0.0008 32.7 1.0 17 25-41 269-285 (316)
94 PRK10785 maltodextrin glucosid 23.6 95 0.0021 32.1 4.0 28 173-200 181-208 (598)
95 COG0635 HemN Coproporphyrinoge 23.3 7.3E+02 0.016 24.5 11.2 115 125-241 86-214 (416)
96 PRK08659 2-oxoglutarate ferred 23.3 7E+02 0.015 24.3 10.8 62 125-193 272-333 (376)
97 PF06999 Suc_Fer-like: Sucrase 22.9 3.6E+02 0.0077 23.8 7.1 78 125-213 131-217 (230)
98 cd06275 PBP1_PurR Ligand-bindi 22.9 4.6E+02 0.0099 22.6 7.8 57 135-193 8-64 (269)
99 PRK15381 pathogenicity island 22.5 1.4E+02 0.003 29.8 4.7 55 174-228 264-335 (408)
100 cd06292 PBP1_LacI_like_10 Liga 22.4 4.6E+02 0.0099 22.7 7.7 58 134-193 7-64 (273)
101 PRK03359 putative electron tra 22.0 2.6E+02 0.0056 26.0 6.2 48 143-192 39-88 (256)
102 KOG1838 Alpha/beta hydrolase [ 21.9 3.3E+02 0.0072 27.3 7.2 84 126-228 124-208 (409)
103 cd06321 PBP1_ABC_sugar_binding 21.8 3.2E+02 0.0069 23.7 6.6 11 174-184 72-82 (271)
104 PRK11041 DNA-binding transcrip 21.5 5E+02 0.011 23.0 7.9 64 128-193 37-100 (309)
105 cd06301 PBP1_rhizopine_binding 21.5 3.7E+02 0.008 23.2 6.9 56 136-193 9-65 (272)
106 PRK01060 endonuclease IV; Prov 21.3 5.9E+02 0.013 22.7 10.5 19 173-191 14-32 (281)
107 cd06274 PBP1_FruR Ligand bindi 21.3 4.7E+02 0.01 22.5 7.5 56 136-193 9-64 (264)
108 PF06688 DUF1187: Protein of u 21.2 24 0.00051 26.0 -0.6 21 46-66 2-22 (61)
109 cd06283 PBP1_RegR_EndR_KdgR_li 21.2 3.9E+02 0.0085 22.8 7.0 18 175-192 46-63 (267)
110 PF07203 DUF1412: Protein of u 21.2 43 0.00092 23.9 0.6 15 16-30 32-46 (53)
111 PRK08508 biotin synthase; Prov 21.0 6.6E+02 0.014 23.1 11.2 112 127-243 58-177 (279)
112 PF00128 Alpha-amylase: Alpha 20.8 1.1E+02 0.0025 26.9 3.5 25 173-197 6-30 (316)
113 cd06286 PBP1_CcpB_like Ligand- 20.8 5.4E+02 0.012 22.0 7.9 56 136-193 9-64 (260)
114 cd07067 HP_PGM_like Histidine 20.5 1.5E+02 0.0033 23.7 4.0 12 143-154 32-43 (153)
115 TIGR03100 hydr1_PEP hydrolase, 20.3 4.6E+02 0.01 23.6 7.5 31 125-155 25-56 (274)
116 PRK10703 DNA-binding transcrip 20.2 5.3E+02 0.012 23.4 8.0 63 128-192 61-123 (341)
No 1
>PLN02757 sirohydrochlorine ferrochelatase
Probab=100.00 E-value=2.2e-34 Score=246.06 Aligned_cols=151 Identities=79% Similarity=1.309 Sum_probs=141.8
Q ss_pred ccCCCCCCCCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeeccc
Q 023828 117 SSSRDGVGDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLF 196 (276)
Q Consensus 117 ~~~~~~~~~~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~ 196 (276)
|||--+++++.+||||+||||+++++..+++++++|+++.++..|.+||||+++|+++++++++.++|+++|+|+||||+
T Consensus 4 ~~~~~~~~~~~~lllvgHGSrd~~a~~~~~~la~~l~~~~~~~~V~~aFle~~~Psl~eal~~l~~~g~~~vvVvP~FL~ 83 (154)
T PLN02757 4 GGNGNGVGDKDGVVIVDHGSRRKESNLMLEEFVAMYKQKTGHPIVEPAHMELAEPSIKDAFGRCVEQGASRVIVSPFFLS 83 (154)
T ss_pred ccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHhhCCCCcEEEEEEecCCCCHHHHHHHHHHCCCCEEEEEEhhhc
Confidence 34666788999999999999999999999999999999888778999999999999999999999999999999999999
Q ss_pred ccccccccHHHHHHHHHhhCCCccEEEeCCCCCCHHHHHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCc
Q 023828 197 PGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVDVVNDRIKHCLSHAVGDADECVVCAGTDRCRLY 267 (276)
Q Consensus 197 ~G~H~~~DIp~~l~~l~~~~p~v~I~va~PLG~~p~L~~lL~dRl~eAl~~~~~~~~~~~vlvG~Gs~~~~ 267 (276)
+|.|+++|||++++++++++|+++|.+++|||.||.|+++|.+|+++++.....+.++|++|+|+|.|+.|
T Consensus 84 ~G~H~~~DIp~~v~~~~~~~p~~~i~~~~pLG~~p~l~~ll~~Ri~eal~~~~~~~~~~~~~~~~~~~~~~ 154 (154)
T PLN02757 84 PGRHWQEDIPALTAEAAKEHPGVKYLVTAPIGLHELMVDVVNDRIKYCLSHVAGDADECDVCAGTGKCRLY 154 (154)
T ss_pred CCcchHhHHHHHHHHHHHHCCCcEEEECCCCCCCHHHHHHHHHHHHHHhhcccCCCCccceeecccccccC
Confidence 99999999999999999999999999999999999999999999999998765556889999999999875
No 2
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=99.95 E-value=3.1e-27 Score=193.69 Aligned_cols=119 Identities=32% Similarity=0.552 Sum_probs=112.9
Q ss_pred CcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccccH
Q 023828 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDI 205 (276)
Q Consensus 126 ~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DI 205 (276)
++++|||+|||++++++..+.++++.++++.++..|++||||+++|++++++++|.++|+++|+|+||||++|.|+++||
T Consensus 1 ~~~lvlv~hGS~~~~~~~~~~~~~~~l~~~~~~~~v~~afle~~~P~l~~~l~~l~~~g~~~v~vvPlfl~~G~h~~~di 80 (126)
T PRK00923 1 MLGLLLVGHGSRLPYNKEVVTKIAEKIKEKHPFYIVEVGFMEFNEPTIPEALKKLIGTGADKIIVVPVFLAHGVHTKRDI 80 (126)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHhCCCCeEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEchhhccCccccccc
Confidence 36899999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred HHHHH-------HHHhhCCCccEEEeCCCCCCHHHHHHHHHHHHHH
Q 023828 206 PSLTA-------EAAKEHPGVPYIVTAPLGLHEQLVDVVNDRIKHC 244 (276)
Q Consensus 206 p~~l~-------~l~~~~p~v~I~va~PLG~~p~L~~lL~dRl~eA 244 (276)
|+++. .++..+|++++.+++|||.||.+++++.+|+++|
T Consensus 81 p~~~~~~~~~~~~~~~~~~~~~i~~~~~lG~~p~l~~~~~~r~~e~ 126 (126)
T PRK00923 81 PRILGLDEGEKEEIEEDGKDVEIVYAEPLGADERIADIVLKRANEA 126 (126)
T ss_pred chhhhcccccccchhhcCCCeEEEEcCCCCCCHHHHHHHHHHHhhC
Confidence 99887 6777889999999999999999999999999874
No 3
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=99.95 E-value=5.2e-27 Score=194.33 Aligned_cols=117 Identities=26% Similarity=0.348 Sum_probs=106.9
Q ss_pred cEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccccHH
Q 023828 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIP 206 (276)
Q Consensus 127 ~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DIp 206 (276)
++||||+||||++++++.+++++++++++.+ ..|.+||||+++|++.+++++|.++|+++|+|+||||+.|.|++.|||
T Consensus 1 ~~lllvgHGSR~~~~~~~~~~la~~l~~~~~-~~v~~afle~~~P~l~~~l~~l~~~G~~~ivVvPlFL~~G~Hv~~DiP 79 (125)
T cd03415 1 TAIIIITHGSRRNTFNEDMEEWAAYLERKLG-VPVYLTYNEYAEPNWRDLLNELLSEGYGHIIIALAFLGRGNHVARDIM 79 (125)
T ss_pred CEEEEEecCCCChHHHHHHHHHHHHHHhccC-CceEEEEeecCCCCHHHHHHHHHHCCCCEEEEehhhccCCcchHHHHH
Confidence 5899999999999999999999999997554 569999999999999999999999999999999999999999999999
Q ss_pred HHHHHH------HhhC--CCccEEEeCCCCCCHHHHHHHHHHHHHH
Q 023828 207 SLTAEA------AKEH--PGVPYIVTAPLGLHEQLVDVVNDRIKHC 244 (276)
Q Consensus 207 ~~l~~l------~~~~--p~v~I~va~PLG~~p~L~~lL~dRl~eA 244 (276)
+++++. +.++ +++++++++|||.||.+++++.+|++++
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~i~~~~pLG~~p~l~~~l~~r~~~~ 125 (125)
T cd03415 80 GELGVSRFYKWVMSKYGGKEILVYVTEPLADSPLVKLALFYRVKRA 125 (125)
T ss_pred HHHHhhcccchhhhccCCCCceEEEeCCCCCCHHHHHHHHHHHHhC
Confidence 999873 2334 5678999999999999999999999873
No 4
>PRK02395 hypothetical protein; Provisional
Probab=99.94 E-value=1e-26 Score=214.94 Aligned_cols=144 Identities=22% Similarity=0.293 Sum_probs=125.7
Q ss_pred cEEEEEeCCC-CCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccccH
Q 023828 127 DGVIIVDHGS-RRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDI 205 (276)
Q Consensus 127 ~aLLLV~HGS-r~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DI 205 (276)
++||||+||| +++++++.++.++++|+++.++..|.+|||| ++|++.++++++. .++|+|+||||++|.|+++||
T Consensus 2 ~~lllvgHGSrr~~~~~~~~~~la~~l~~~~~~~~v~~~fle-~~P~l~~~l~~l~---~~~ivVvPlfL~~G~Hv~~DI 77 (279)
T PRK02395 2 QALVLVGHGSHLNPDSALPTYAHAETIRARGLFDEVREGFWK-EEPSLRQVLRTVE---SDEVYVVPLFISEGYFTEQVI 77 (279)
T ss_pred ceEEEEeCCCCCCcchHHHHHHHHHHHHhcCCCCeEEEeecc-CCCCHHHHHHhcC---cCcEEEEeeEeccccchhhhh
Confidence 6899999999 5889999999999999999888899999999 9999999999985 589999999999999999999
Q ss_pred HHHHHHH----HhhCC------CccEEEeCCCCCCHHHHHHHHHHHHHHHhhcCCCCCceeEEEecCCCCC-cCCCcccc
Q 023828 206 PSLTAEA----AKEHP------GVPYIVTAPLGLHEQLVDVVNDRIKHCLSHAVGDADECVVCAGTDRCRL-YGAGLANK 274 (276)
Q Consensus 206 p~~l~~l----~~~~p------~v~I~va~PLG~~p~L~~lL~dRl~eAl~~~~~~~~~~~vlvG~Gs~~~-~~~~~~~~ 274 (276)
|+.++.. ..+++ ++++.+++|||.+|.+.+++.+|+++++...+.+.+++++++||||.++ .+|.++|+
T Consensus 78 P~~l~~~~~~~~~~~~~~~~~~~~~i~~~~plG~~p~l~~~l~~ri~e~~~~~~~~~~~alvlvgHGS~~~~~a~~~~~~ 157 (279)
T PRK02395 78 PRELGLGHDGPVADRGTLRALDGKTVHYTGPVGTHPAMADVIAARARSVTGDPDVGEDTALAVVGHGTERNENSAKAIYY 157 (279)
T ss_pred HHHhcCCcCCccccccccccCCCceEEeCCCCCCChHHHHHHHHHHHHhhcCCCCCcCceEEEEecCCCCchhHHHHHHH
Confidence 9998752 12233 8899999999999999999999999988764434567899999999976 46776654
No 5
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=99.94 E-value=1.2e-25 Score=181.24 Aligned_cols=116 Identities=31% Similarity=0.566 Sum_probs=110.4
Q ss_pred cEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccccHH
Q 023828 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIP 206 (276)
Q Consensus 127 ~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DIp 206 (276)
.++||++|||++++++..+++++++++++.++..|++||+|.++|++.++++++.++|+++|+|+||||++|.|++ ||+
T Consensus 1 ~a~llv~HGS~~~~~~~~~~~l~~~l~~~~~~~~v~~afle~~~P~~~~~l~~l~~~g~~~i~vvP~fL~~G~h~~-~i~ 79 (117)
T cd03414 1 TAVVLVGRGSSDPDANADVAKIARLLEEGTGFARVETAFAAATRPSLPEALERLRALGARRVVVLPYLLFTGVLMD-RIE 79 (117)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCHHHHHHHHHHcCCCEEEEEechhcCCchHH-HHH
Confidence 4799999999999999999999999999998778999999998999999999999999999999999999999985 899
Q ss_pred HHHHHHHhhCCCccEEEeCCCCCCHHHHHHHHHHHHHH
Q 023828 207 SLTAEAAKEHPGVPYIVTAPLGLHEQLVDVVNDRIKHC 244 (276)
Q Consensus 207 ~~l~~l~~~~p~v~I~va~PLG~~p~L~~lL~dRl~eA 244 (276)
+.+++++.+ |+.++.+++|||.+|.+++++.+|++++
T Consensus 80 ~~~~~~~~~-~~~~i~~~~pLG~~~~l~~~l~~r~~~~ 116 (117)
T cd03414 80 EQVAELAAE-PGIEFVLAPPLGPHPELAEALLERVREA 116 (117)
T ss_pred HHHHHHHhC-CCceEEECCCCCCCHHHHHHHHHHHHhh
Confidence 999999888 8899999999999999999999999876
No 6
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=99.91 E-value=4.3e-24 Score=202.48 Aligned_cols=124 Identities=26% Similarity=0.370 Sum_probs=112.6
Q ss_pred CCCCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeeccccccccc
Q 023828 123 VGDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWC 202 (276)
Q Consensus 123 ~~~~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~ 202 (276)
+++.++||||+||||++++++.+++++++++++.+ ..|++||||+++|++.+++++|.++|+++|+|+||||++|.|++
T Consensus 3 ~~~~~aiLLvgHGSRdp~~~~~~~~La~~l~~~~~-~~V~~aFLE~~ePsl~eal~~l~~~G~~~IvVvPlFL~~G~Hv~ 81 (335)
T PRK05782 3 RQSNTAIILIGHGSRRETFNSDMEGMANYLKEKLG-VPIYLTYNEFAEPNWRSLLNEIIKEGYRRVIIALAFLGRGNHVF 81 (335)
T ss_pred CCCCceEEEEecCCCChHHHHHHHHHHHHHHhccC-CceEEEEeccCCCCHHHHHHHHHHCCCCEEEEecccccCCcchh
Confidence 35678999999999999999999999999998765 47999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHH--H----hhCCC--ccEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 023828 203 QDIPSLTAEA--A----KEHPG--VPYIVTAPLGLHEQLVDVVNDRIKHCLSH 247 (276)
Q Consensus 203 ~DIp~~l~~l--~----~~~p~--v~I~va~PLG~~p~L~~lL~dRl~eAl~~ 247 (276)
+|||++++.. + +++|+ +++++++|||.||.+++++.+|+++++..
T Consensus 82 ~DIP~~L~~~~~~~~~~~~~~~~~i~i~l~~pLG~~p~l~~ll~~Rv~eal~~ 134 (335)
T PRK05782 82 RDIMGELGVQRLNSWEVSKISGKEVEFYVTEPLSDSPLVGLALYYRLARALDA 134 (335)
T ss_pred hhHHHHHHHhhhcchhhhhcCCCceeEEECCCCCCChHHHHHHHHHHHHHhhc
Confidence 9999998852 2 45544 67799999999999999999999998864
No 7
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=99.91 E-value=9.5e-25 Score=172.69 Aligned_cols=105 Identities=44% Similarity=0.739 Sum_probs=98.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccccHHHHHHHHH
Q 023828 134 HGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAEAA 213 (276)
Q Consensus 134 HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DIp~~l~~l~ 213 (276)
|||++++++..+++++++|+++.+ ..|.+||+|+++|++.+++++|.++|+++|+|+||||++|.|+++|||+++++++
T Consensus 1 HGSr~~~~~~~~~~la~~l~~~~~-~~v~~~fle~~~P~l~~~l~~l~~~g~~~ivvvP~fL~~G~h~~~DIp~~l~~~~ 79 (105)
T PF01903_consen 1 HGSRDPEANAELEDLADRLRERLP-VPVEVAFLEFAEPSLEEALERLVAQGARRIVVVPYFLFPGYHVKRDIPEALAEAR 79 (105)
T ss_dssp -STSSCHHHHHHHHHHHHHHHHTS-SEEEEEESSCCCSCCHHCCHHHHCCTCSEEEEEEESSSSSHHHHCHHHHHHCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcC-CeEEEEEEecCCCCHHHHHHHHHHcCCCeEEEEeeeecCccchHhHHHHHHHHHH
Confidence 999999999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccEEEeCCCCCCHHHHHHHHH
Q 023828 214 KEHPGVPYIVTAPLGLHEQLVDVVND 239 (276)
Q Consensus 214 ~~~p~v~I~va~PLG~~p~L~~lL~d 239 (276)
.++|++++.+++|||.||.|+++|.+
T Consensus 80 ~~~~~~~v~~~~pLG~~p~l~~~l~e 105 (105)
T PF01903_consen 80 ERHPGIEVRVAPPLGPHPLLAELLAE 105 (105)
T ss_dssp HCSTTEEEEE---GGGSCCHHHHHH-
T ss_pred hhCCceEEEECCCCCCCHHHHHHHhC
Confidence 99999999999999999999999875
No 8
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=99.90 E-value=8.2e-24 Score=193.10 Aligned_cols=145 Identities=30% Similarity=0.479 Sum_probs=133.3
Q ss_pred CcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccccH
Q 023828 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDI 205 (276)
Q Consensus 126 ~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DI 205 (276)
..++|+++||||.+.+++.+..+++.++++..+..|..+|+|+++|+++++++.|.++|+++|+|||+||+.|.|+++||
T Consensus 2 ~~~~llvgHGsr~p~~~~~~~~~a~~~~~~~~~~~v~~~f~e~~~P~l~~~~~al~~~G~~~ivvVPlfl~~g~H~~~DI 81 (245)
T COG2138 2 MPALLLVGHGSRLPRGREVAEAIAARLEERGDFPPVRVAFLELAEPSLREALQALVARGVDRIVVVPLFLAAGYHTKRDI 81 (245)
T ss_pred CcceeeeecCCCCccHHHHHHHHHHHHHhhcCCccchhHHHHhcCCCHHHHHHHHHhcCCCeEEEeehhhccCchhhccc
Confidence 46899999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCccEEEeCCCCCCHHHHHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCcCCCcccc
Q 023828 206 PSLTAEAAKEHPGVPYIVTAPLGLHEQLVDVVNDRIKHCLSHAVGDADECVVCAGTDRCRLYGAGLANK 274 (276)
Q Consensus 206 p~~l~~l~~~~p~v~I~va~PLG~~p~L~~lL~dRl~eAl~~~~~~~~~~~vlvG~Gs~~~~~~~~~~~ 274 (276)
|+++...+++++...+. |+|.|+.+.+++.+|+.+.......+. +.+++.++|++++.+|.++|+
T Consensus 82 P~~L~~~~~~~~~~~~~---p~G~~~~~~~~~~~r~~~~~~~~~~~~-~~vv~~~~Gs~~~~~~~~~~~ 146 (245)
T COG2138 82 PAELGLARQAHPQVDLS---PLGTHPAVLDLLGQRLEDAGADEADDA-ERVVLEPRGSSDPIANAAVYR 146 (245)
T ss_pred HHHHHHhhhcCCccccc---ccCCchHHHHHHHHHHHHhcccccccc-ceEEEeccCCCcccchhHHHH
Confidence 99999999998866544 999999999999999999877654222 459999999999999999886
No 9
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=99.90 E-value=4.9e-23 Score=162.24 Aligned_cols=101 Identities=40% Similarity=0.616 Sum_probs=97.5
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccccHHH
Q 023828 128 GVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPS 207 (276)
Q Consensus 128 aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DIp~ 207 (276)
++|||+|||++++++..+..++++++++.++..|+.||+|..+|+++++++++.++|+++|+|+||||++|.|+++|||+
T Consensus 1 ~ivlv~hGS~~~~~~~~~~~l~~~l~~~~~~~~v~~afle~~~p~~~~~l~~l~~~g~~~v~vvPlfl~~G~h~~~dip~ 80 (101)
T cd03416 1 ALLLVGHGSRDPRAAEALEALAERLRERLPGDEVELAFLELAEPSLAEALDELAAQGATRIVVVPLFLLAGGHVKEDIPA 80 (101)
T ss_pred CEEEEEcCCCCHHHHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEeeEeCCCccccccHHH
Confidence 58999999999999999999999999999888999999998899999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCccEEEeCCCC
Q 023828 208 LTAEAAKEHPGVPYIVTAPLG 228 (276)
Q Consensus 208 ~l~~l~~~~p~v~I~va~PLG 228 (276)
++++++++++++++++++|||
T Consensus 81 ~~~~~~~~~~~~~i~~~~plG 101 (101)
T cd03416 81 ALAAARARHPGVRIRYAPPLG 101 (101)
T ss_pred HHHHHHHHCCCeEEEecCCCC
Confidence 999999999999999999997
No 10
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=99.85 E-value=2e-20 Score=154.81 Aligned_cols=114 Identities=14% Similarity=0.185 Sum_probs=104.9
Q ss_pred cEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEee-----------cCCCCHHHHHHHHHHcCCCeEEEEeecc
Q 023828 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHME-----------LAEPSIKDAFGSCVQQGANRVIVSPFFL 195 (276)
Q Consensus 127 ~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE-----------~a~PsL~eaLe~L~a~G~~~VvVVPLFL 195 (276)
+|||||+|||++++++..+..+++.+++++|+..|+.||++ ...|++.++|++|.++|+++|+|+|+|+
T Consensus 1 ~aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l 80 (127)
T cd03412 1 KAILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLHI 80 (127)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCee
Confidence 48999999999999999999999999999999999999996 4589999999999999999999999999
Q ss_pred cccccccccHHHHHHHHHhhCCCccEEEeCCCCCCHHHHHHHHHHHHH
Q 023828 196 FPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVDVVNDRIKH 243 (276)
Q Consensus 196 ~~G~H~~~DIp~~l~~l~~~~p~v~I~va~PLG~~p~L~~lL~dRl~e 243 (276)
++|.|+ +||++.+++++ ++..++.+++||+.++...+.+.+.+.+
T Consensus 81 ~~G~e~-~di~~~v~~~~--~~~~~i~~g~pLl~~~~d~~~v~~al~~ 125 (127)
T cd03412 81 IPGEEY-EKLKREVDAFK--KGFKKIKLGRPLLYSPEDYEEVAAALKD 125 (127)
T ss_pred ECcHHH-HHHHHHHHHHh--CCCceEEEccCCCCCHHHHHHHHHHHHh
Confidence 999996 69999999887 6778999999999999988877776654
No 11
>PRK02395 hypothetical protein; Provisional
Probab=99.82 E-value=1e-19 Score=168.42 Aligned_cols=123 Identities=24% Similarity=0.385 Sum_probs=108.8
Q ss_pred CCCCcEEEEEeCCCCC-chhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccc
Q 023828 123 VGDKDGVIIVDHGSRR-RESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHW 201 (276)
Q Consensus 123 ~~~~~aLLLV~HGSr~-pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~ 201 (276)
+..+.+||||+|||++ +.++..+.+++++++++.++..|.+||+| ..|+++++++++. .++|+|+||||++|.|+
T Consensus 132 ~~~~~alvlvgHGS~~~~~a~~~~~~~a~~l~~~~~~~~V~~~fle-~~P~l~~~l~~l~---~~~V~vvP~fL~~G~H~ 207 (279)
T PRK02395 132 VGEDTALAVVGHGTERNENSAKAIYYHADRLRERGRFAEVEALFLD-EEPEVDDWPDLFE---ADDVVVVPLFIADGFHT 207 (279)
T ss_pred CCcCceEEEEecCCCCchhHHHHHHHHHHHHHhhCCCCeEEEEecc-CCCCHHHHHHHhC---CCeEEEEeeecccCcch
Confidence 4567899999999996 46789999999999998877789999999 7999999998863 58999999999999999
Q ss_pred cccHHHHHHHHHh-----hCC----CccEEEeCCCCCCHHHHHHHHHHHHHHHhhcC
Q 023828 202 CQDIPSLTAEAAK-----EHP----GVPYIVTAPLGLHEQLVDVVNDRIKHCLSHAV 249 (276)
Q Consensus 202 ~~DIp~~l~~l~~-----~~p----~v~I~va~PLG~~p~L~~lL~dRl~eAl~~~~ 249 (276)
++|||++++..++ ++| ++++.+++|||.+|.+++++.+|+++++...+
T Consensus 208 ~~DIp~~~~~~~~~~~g~~~~~~~~~~~i~~~~~LG~~p~l~~i~~~R~~ea~~~~~ 264 (279)
T PRK02395 208 QEDIPEDMGLTDDYRTGYDVPTAVDGHRIWYAGAVGTEPLMADVILERAADAGADVG 264 (279)
T ss_pred HhHHHHHHHHhhccccccCCCcccCCeeEEEecCCCCCHHHHHHHHHHHHHhhcCcc
Confidence 9999999876643 456 78899999999999999999999999988764
No 12
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=99.75 E-value=4.4e-18 Score=136.51 Aligned_cols=85 Identities=20% Similarity=0.350 Sum_probs=76.8
Q ss_pred cEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccccHH
Q 023828 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIP 206 (276)
Q Consensus 127 ~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DIp 206 (276)
.+||||+||||+++ +..++.++++++++.+ ..|++|||| +.|+++++++++.++|+++|+|+||||+.|.|+++|||
T Consensus 1 ~~illvgHGSr~~~-~~~~~~l~~~l~~~~~-~~v~~~~lE-~~P~i~~~l~~l~~~G~~~i~lvPl~L~~G~H~~~Dip 77 (103)
T cd03413 1 EAVVFMGHGTDHPS-NAVYAALEYVLREEDP-ANVFVGTVE-GYPGLDDVLAKLKKAGIKKVTLMPLMLVAGDHAHNDMA 77 (103)
T ss_pred CeEEEEECCCCchh-hhHHHHHHHHHHhcCC-CcEEEEEEc-CCCCHHHHHHHHHHcCCCEEEEEehhheecccchhcCC
Confidence 47999999999987 7899999999998876 679999999 99999999999999999999999999999999999999
Q ss_pred HH-HHHHHh
Q 023828 207 SL-TAEAAK 214 (276)
Q Consensus 207 ~~-l~~l~~ 214 (276)
.. -+.|+.
T Consensus 78 ge~~~SW~~ 86 (103)
T cd03413 78 GDEPDSWKS 86 (103)
T ss_pred CCCchhHHH
Confidence 75 234543
No 13
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=99.72 E-value=6e-17 Score=126.45 Aligned_cols=87 Identities=20% Similarity=0.229 Sum_probs=81.2
Q ss_pred EEEEEeCCCCCc-hhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccccHH
Q 023828 128 GVIIVDHGSRRR-ESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIP 206 (276)
Q Consensus 128 aLLLV~HGSr~p-ea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DIp 206 (276)
+||+|+|||+++ ..+..+..++++|+++.+...|.+||++...|++++++++|.++|+++|+|+|+|+++|.|+..||+
T Consensus 1 ~lllv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvvPl~~~~g~h~~~di~ 80 (101)
T cd03409 1 GLLVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPLAPVSGDEVFYDID 80 (101)
T ss_pred CEEEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeCccccChhhHHHHH
Confidence 689999999998 8889999999999999887889999999669999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 023828 207 SLTAEAAK 214 (276)
Q Consensus 207 ~~l~~l~~ 214 (276)
+.+++..+
T Consensus 81 ~~~~~~~~ 88 (101)
T cd03409 81 SEIGLVRK 88 (101)
T ss_pred HHHHHHHH
Confidence 99887765
No 14
>PRK00035 hemH ferrochelatase; Reviewed
Probab=99.70 E-value=1.7e-16 Score=149.76 Aligned_cols=144 Identities=15% Similarity=0.132 Sum_probs=117.6
Q ss_pred EEEeCCCCCchhH-HHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccccHHHH
Q 023828 130 IIVDHGSRRRESN-LMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSL 208 (276)
Q Consensus 130 LLV~HGSr~pea~-~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DIp~~ 208 (276)
=.++|||+..... ...+.+.+.|.++.+...|..| |+++.|++++++++|.++|+++|+|+|+|++.+.++..++.+.
T Consensus 64 ~~ig~gSPl~~~t~~q~~~L~~~l~~~~~~~~V~~a-m~y~~P~i~eal~~l~~~G~~~IivlPL~p~~s~~t~gs~~~~ 142 (333)
T PRK00035 64 ASIGGGSPLNVITRRQAEALQAELAARGPDLPVYLG-MRYWNPSIEEALEALKADGVDRIVVLPLYPQYSYSTTASYFED 142 (333)
T ss_pred HHcCCCChhHHHHHHHHHHHHHHHhccCCCceEEEe-ecCCCCCHHHHHHHHHhcCCCEEEEEECCCccccccHHHHHHH
Confidence 3568899876444 4455666666554445677777 7999999999999999999999999999999998888788877
Q ss_pred HHHHHhhCC-CccEEEeCCCCCCHHHHHHHHHHHHHHHhhcCCC-CCceeEEEecCCCCCc-CCCcccc
Q 023828 209 TAEAAKEHP-GVPYIVTAPLGLHEQLVDVVNDRIKHCLSHAVGD-ADECVVCAGTDRCRLY-GAGLANK 274 (276)
Q Consensus 209 l~~l~~~~p-~v~I~va~PLG~~p~L~~lL~dRl~eAl~~~~~~-~~~~~vlvG~Gs~~~~-~~~~~~~ 274 (276)
+.+..++++ .+++++.++++.+|.+++++.+++++++...+.+ .++.+|++|||+++.+ .+||.|.
T Consensus 143 i~~~~~~~~~~~~i~~i~~~~~~p~~i~~l~~~I~~~~~~~~~~~~~~~llfs~HG~P~~~~~~gd~Y~ 211 (333)
T PRK00035 143 LARALAKLRLQPEIRFIRSYYDHPGYIEALAESIREALAKHGEDPEPDRLLFSAHGLPQRYIDKGDPYQ 211 (333)
T ss_pred HHHHHHhcCCCCcEEEeCCccCCHHHHHHHHHHHHHHHHhcCcccCCcEEEEecCCCchHHhhcCCChH
Confidence 766655555 5799999999999999999999999999765432 4678999999999998 6888775
No 15
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=99.65 E-value=6.4e-16 Score=142.57 Aligned_cols=137 Identities=17% Similarity=0.261 Sum_probs=97.1
Q ss_pred cEEEEEeCCCCCchhHH-HHHHHHHHHHHHcCCccEEEEEee------------cCCCCHHHHHHHHHHcCCCeEEEEee
Q 023828 127 DGVIIVDHGSRRRESNL-MLKQFVAMFREKTGYLIVEPAHME------------LAEPSIKDAFGSCVQQGANRVIVSPF 193 (276)
Q Consensus 127 ~aLLLV~HGSr~pea~~-~l~~lA~~L~~r~~~~~V~~AfLE------------~a~PsL~eaLe~L~a~G~~~VvVVPL 193 (276)
+|||||++||+.+++.. .+..+.+.+++.+|..+|+.||.. ..-+++.++|++|.++|+++|+|+|+
T Consensus 1 KAIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~~I~~kl~~~~g~~i~~~~eaL~~L~~~G~~~V~VQpl 80 (262)
T PF06180_consen 1 KAILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSRIIRKKLAERDGIKIDSPEEALAKLADEGYTEVVVQPL 80 (262)
T ss_dssp EEEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-HHHHHHHHHCHT-----HHHHHHHHHHCT--EEEEEE-
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHHHHHHHHHhcCCCCcCCHHHHHHHHHHCCCCEEEEeec
Confidence 58999999999999887 999999999999999999999988 23488999999999999999999999
Q ss_pred cccccccccccHHHHHHHHHhhCCCccEEEeCCCCC------CHHHHHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCc
Q 023828 194 FLFPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGL------HEQLVDVVNDRIKHCLSHAVGDADECVVCAGTDRCRLY 267 (276)
Q Consensus 194 FL~~G~H~~~DIp~~l~~l~~~~p~v~I~va~PLG~------~p~L~~lL~dRl~eAl~~~~~~~~~~~vlvG~Gs~~~~ 267 (276)
++.+|..+. +|.+.++.++..|. ++.++.||-. ++.-.+.+++-+.+-+.. ...++++|+||||+.|++
T Consensus 81 hiipG~Ey~-~l~~~v~~~~~~F~--~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~~~--~~~~~a~vlmGHGt~h~a 155 (262)
T PF06180_consen 81 HIIPGEEYE-KLRATVEAYKHDFK--KIVLGRPLLYTMGQENSPEDYEAVAEALAEEFPK--KRKDEAVVLMGHGTPHPA 155 (262)
T ss_dssp -SCSSHHHH-HHHHHHHHHCCCSS--EEEEE--SCSS-----SHHHHHHHHHHHHCCS-T--T-TTEEEEEEE---SCHH
T ss_pred ceeCcHhHH-HHHHHHHHhhccCC--eEEecccccccccccCChHHHHHHHHHHHHhccc--cCCCCEEEEEeCCCCCCc
Confidence 999999986 68888877765554 7899999988 476665555555443222 236789999999999985
Q ss_pred C
Q 023828 268 G 268 (276)
Q Consensus 268 ~ 268 (276)
+
T Consensus 156 n 156 (262)
T PF06180_consen 156 N 156 (262)
T ss_dssp H
T ss_pred c
Confidence 3
No 16
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=99.51 E-value=2e-14 Score=132.71 Aligned_cols=119 Identities=21% Similarity=0.367 Sum_probs=88.9
Q ss_pred CCCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccc
Q 023828 124 GDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQ 203 (276)
Q Consensus 124 ~~~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~ 203 (276)
.++.++|++||||.++ ++..+..+...|++. ++..|++|.+| +.|++++.+++|.+.|+++|.++|||+..|.|+.+
T Consensus 139 ~~~~a~vlmGHGt~h~-an~~Y~~l~~~l~~~-~~~~v~vgtvE-G~P~~~~vi~~L~~~g~k~V~L~PlMlVAGdHa~n 215 (262)
T PF06180_consen 139 RKDEAVVLMGHGTPHP-ANAAYSALQAMLKKH-GYPNVFVGTVE-GYPSLEDVIARLKKKGIKKVHLIPLMLVAGDHAKN 215 (262)
T ss_dssp -TTEEEEEEE---SCH-HHHHHHHHHHHHHCC-T-TTEEEEETT-SSSBHHHHHHHHHHHT-SEEEEEEESSS--HHHHC
T ss_pred CCCCEEEEEeCCCCCC-ccHHHHHHHHHHHhC-CCCeEEEEEeC-CCCCHHHHHHHHHhcCCCeEEEEecccccchhhhh
Confidence 4889999999999986 678899999999984 44569999999 68999999999999999999999999999999999
Q ss_pred cHHH-HHHHHHhhC--CCccE-EEeCCCCCCHHHHHHHHHHHHHHH
Q 023828 204 DIPS-LTAEAAKEH--PGVPY-IVTAPLGLHEQLVDVVNDRIKHCL 245 (276)
Q Consensus 204 DIp~-~l~~l~~~~--p~v~I-~va~PLG~~p~L~~lL~dRl~eAl 245 (276)
||.. .-+.|+.+. .|.++ .+.+.||+.|++.+++.+++++++
T Consensus 216 DmaGde~dSWks~L~~~G~~v~~~l~GLGE~~~i~~ifi~hl~~ai 261 (262)
T PF06180_consen 216 DMAGDEEDSWKSRLEAAGFEVTCVLKGLGEYPAIQQIFIEHLKEAI 261 (262)
T ss_dssp CCCSSSTTSHHHHHHHTT-EEEE----GGGSHHHHHHHHHHHHHHH
T ss_pred hhcCCCcchHHHHHHHCCCEEEEEeccCcCCHHHHHHHHHHHHHHh
Confidence 9964 222333221 13344 478999999999999999999986
No 17
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=99.31 E-value=5.1e-12 Score=113.32 Aligned_cols=141 Identities=16% Similarity=0.200 Sum_probs=115.3
Q ss_pred CCcEEEEEeCCCCCchhHH-HHHHHHHHHHHHcCCccEEEEEeec------------CCCCHHHHHHHHHHcCCCeEEEE
Q 023828 125 DKDGVIIVDHGSRRRESNL-MLKQFVAMFREKTGYLIVEPAHMEL------------AEPSIKDAFGSCVQQGANRVIVS 191 (276)
Q Consensus 125 ~~~aLLLV~HGSr~pea~~-~l~~lA~~L~~r~~~~~V~~AfLE~------------a~PsL~eaLe~L~a~G~~~VvVV 191 (276)
+++|||+|+.|+..++..+ .+..+.+.+.+..|.+.|..||... -..+...||.+|+++|+++|+|.
T Consensus 1 mKKailiVsFGTty~dtre~tIda~e~~va~efpDydvfrAfTS~kIIkkLK~rdgi~~dTP~~aL~klk~~gy~eviiQ 80 (265)
T COG4822 1 MKKAILIVSFGTTYNDTRELTIDAIEEKVADEFPDYDVFRAFTSRKIIKKLKERDGIDFDTPIQALNKLKDQGYEEVIIQ 80 (265)
T ss_pred CCceEEEEEcCCccchhHHhhHHHHHHHHHHhCccHHHHHHHhHHHHHHHHHhhcCcccCCHHHHHHHHHHccchheeee
Confidence 4789999999999888764 5889999999999988888888761 12345789999999999999999
Q ss_pred eecccccccccccHHHHHHHHHhhCCCccEEEeCCCCCCHHHHHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCcCCC
Q 023828 192 PFFLFPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVDVVNDRIKHCLSHAVGDADECVVCAGTDRCRLYGAG 270 (276)
Q Consensus 192 PLFL~~G~H~~~DIp~~l~~l~~~~p~v~I~va~PLG~~p~L~~lL~dRl~eAl~~~~~~~~~~~vlvG~Gs~~~~~~~ 270 (276)
|++..+|..+. -|-+.++.++..|. ++.+++|+...-.-.+...+.+++.+..+ ..++.+|+||||+.|+.+++
T Consensus 81 ~lhiIpG~EyE-klvr~V~~~~~dF~--~lkig~PlLy~k~DYe~~v~aik~~~ppl--~k~e~~vlmgHGt~h~s~~~ 154 (265)
T COG4822 81 PLHIIPGIEYE-KLVREVNKYSNDFK--RLKIGRPLLYYKNDYEICVEAIKDQIPPL--NKDEILVLMGHGTDHHSNAA 154 (265)
T ss_pred eeeecCchHHH-HHHHHHHHHhhhhh--eeecCCceeechhhHHHHHHHHHHhcCCc--CcCeEEEEEecCCCccHHHH
Confidence 99999999986 58888888877764 78899998887766667777776654433 35789999999999987764
No 18
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=99.29 E-value=9.2e-11 Score=105.30 Aligned_cols=123 Identities=20% Similarity=0.264 Sum_probs=99.2
Q ss_pred CCCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccc
Q 023828 124 GDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQ 203 (276)
Q Consensus 124 ~~~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~ 203 (276)
+++.+++|++|||.++ ++..+.-+-..+.+ .++.+|++|.+| +.|.++.+++.|.+.|.++|.++||+|..|.|+.+
T Consensus 135 ~k~e~~vlmgHGt~h~-s~~~YacLd~~~~~-~~f~~v~v~~ve-~yP~~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha~n 211 (265)
T COG4822 135 NKDEILVLMGHGTDHH-SNAAYACLDHVLDE-YGFDNVFVAAVE-GYPLVDTVIEYLRKNGIKEVHLIPLMLVAGDHAKN 211 (265)
T ss_pred CcCeEEEEEecCCCcc-HHHHHHHHHHHHHh-cCCCceEEEEec-CCCcHHHHHHHHHHcCCceEEEeeeEEeechhhhh
Confidence 4789999999999985 44556666666665 567789999999 79999999999999999999999999999999999
Q ss_pred cHHHH-HHHHHhhC--CCccE-EEeCCCCCCHHHHHHHHHHHHHHHhhcC
Q 023828 204 DIPSL-TAEAAKEH--PGVPY-IVTAPLGLHEQLVDVVNDRIKHCLSHAV 249 (276)
Q Consensus 204 DIp~~-l~~l~~~~--p~v~I-~va~PLG~~p~L~~lL~dRl~eAl~~~~ 249 (276)
||... -..|+..+ .|+++ .+...||+.|++.++..++++.|+....
T Consensus 212 DMasddedswk~il~~~G~~v~~~l~GLGE~~~iq~ifi~Hik~aie~~~ 261 (265)
T COG4822 212 DMASDDEDSWKNILEKNGFKVEVYLHGLGENPAIQAIFIDHIKDAIERDN 261 (265)
T ss_pred hhcccchHHHHHHHHhCCceeEEEeecCCCcHHHHHHHHHHHHHHHhhhh
Confidence 99831 12332211 13333 5789999999999999999999988643
No 19
>PRK12435 ferrochelatase; Provisional
Probab=99.18 E-value=7e-10 Score=104.78 Aligned_cols=114 Identities=13% Similarity=0.094 Sum_probs=89.0
Q ss_pred ccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccccHHHHHHHHHhhCCCccEEEeCCCCCCHHHHHHHH
Q 023828 159 LIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVDVVN 238 (276)
Q Consensus 159 ~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DIp~~l~~l~~~~p~v~I~va~PLG~~p~L~~lL~ 238 (276)
..|+.| |.++.|++++++++|.+.|+++|+++|+|.+....+....-+.+.+..+..+..++++.+++..+|.+++++.
T Consensus 79 ~~V~~a-mry~~P~i~~~l~~l~~~g~~~iv~lpLyPqyS~~Tt~s~~~~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~a 157 (311)
T PRK12435 79 FKLYLG-LKHIEPFIEDAVEQMHNDGIEEAISIVLAPHYSTFSVKSYNKRAKEEAEKLGGPTITSIESWYDEPKFIQYWA 157 (311)
T ss_pred ceEEEE-ecCCCCCHHHHHHHHHHcCCCeEEEEECCCccccccHHHHHHHHHHHhcccCCCeEEEeCCccCChHHHHHHH
Confidence 567777 7889999999999999999999999999998776665444444444333344568899999999999999999
Q ss_pred HHHHHHHhhcCCC--CCceeEEEecCCCCCcC-CCccc
Q 023828 239 DRIKHCLSHAVGD--ADECVVCAGTDRCRLYG-AGLAN 273 (276)
Q Consensus 239 dRl~eAl~~~~~~--~~~~~vlvG~Gs~~~~~-~~~~~ 273 (276)
++|++++...+.. .+..+++..||-..-.- .||-|
T Consensus 158 ~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i~~GDpY 195 (311)
T PRK12435 158 DQIKETFAQIPEEEREKAVLIVSAHSLPEKIIAAGDPY 195 (311)
T ss_pred HHHHHHHHHcCcccccceEEEEecCCCchhHhhCCCCH
Confidence 9999999876432 23579999999874433 44544
No 20
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=99.16 E-value=3.9e-10 Score=94.50 Aligned_cols=105 Identities=24% Similarity=0.269 Sum_probs=89.6
Q ss_pred CCCcEEEEEeCCCCCchh------HHHHHHHHHHHHHHcC--CccEEEEEeecC------CCCHHHHHHHHHHcCCCeEE
Q 023828 124 GDKDGVIIVDHGSRRRES------NLMLKQFVAMFREKTG--YLIVEPAHMELA------EPSIKDAFGSCVQQGANRVI 189 (276)
Q Consensus 124 ~~~~aLLLV~HGSr~pea------~~~l~~lA~~L~~r~~--~~~V~~AfLE~a------~PsL~eaLe~L~a~G~~~Vv 189 (276)
.+...||+.+||.+.... .....+.+++++++.+ ...+.++|++.. +|++.++++++.++|+++|+
T Consensus 16 ~~~~~llfsaHgiP~~~~~~gd~Y~~~~~~~~~~v~~~l~~~~~~~~~~fqS~~g~~~Wl~P~~~~~l~~l~~~G~~~i~ 95 (135)
T cd00419 16 REKDRLLFSAHGLPVRDIKKGDPYPDQCEETARLVAERLGLPFDEYELAYQSRFGPGEWLEPSTDDALEELAKEGVKNVV 95 (135)
T ss_pred CCCCEEEEEcCCCHHHHhhCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCCCCCCCCCHHHHHHHHHHcCCCeEE
Confidence 467899999999985443 6778889999998886 667899999865 89999999999999999999
Q ss_pred EEee-cccccccccccHHHHHHHHHhhCCCccEEEeCCCC
Q 023828 190 VSPF-FLFPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLG 228 (276)
Q Consensus 190 VVPL-FL~~G~H~~~DIp~~l~~l~~~~p~v~I~va~PLG 228 (276)
|+|+ |+..+.++..||+.+.++..++..+..+...+.++
T Consensus 96 v~p~gF~~D~~Etl~di~~e~~~~~~~~G~~~~~rvp~lN 135 (135)
T cd00419 96 VVPIGFVSDHLETLYELDIEYRELAEEAGGENYRRVPCLN 135 (135)
T ss_pred EECCccccccHHHHHHHHHHHHHHHHHcCCceEEEcCCCC
Confidence 9999 99999999999999988877666556777777653
No 21
>PRK00035 hemH ferrochelatase; Reviewed
Probab=99.13 E-value=1.2e-09 Score=103.11 Aligned_cols=122 Identities=18% Similarity=0.246 Sum_probs=97.1
Q ss_pred CCcEEEEEeCCCCCch------hHHHHHHHHHHHHHHcCC--ccEEEEEeec------CCCCHHHHHHHHHHcCCCeEEE
Q 023828 125 DKDGVIIVDHGSRRRE------SNLMLKQFVAMFREKTGY--LIVEPAHMEL------AEPSIKDAFGSCVQQGANRVIV 190 (276)
Q Consensus 125 ~~~aLLLV~HGSr~pe------a~~~l~~lA~~L~~r~~~--~~V~~AfLE~------a~PsL~eaLe~L~a~G~~~VvV 190 (276)
++.+||+++||++.+. ....+.+.++.+.++.+. ..+.+||... .+|+++++|+++.++|+++|+|
T Consensus 188 ~~~~llfs~HG~P~~~~~~gd~Y~~~~~~t~~~l~~~l~~~~~~~~~~fqs~~g~~~Wl~P~~~~~l~~l~~~g~k~V~v 267 (333)
T PRK00035 188 EPDRLLFSAHGLPQRYIDKGDPYQQQCEETARLLAEALGLPDEDYDLTYQSRFGPEPWLEPYTDDTLEELAEKGVKKVVV 267 (333)
T ss_pred CCcEEEEecCCCchHHhhcCCChHHHHHHHHHHHHHHhCCCCCCeEEEeeCCCCCCccCCCCHHHHHHHHHHcCCCeEEE
Confidence 5689999999987543 234567778888888763 5689999975 5699999999999999999999
Q ss_pred Eeecccccccc--cccHHHHHHHHHhhCCCccEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 023828 191 SPFFLFPGRHW--CQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVDVVNDRIKHCLSH 247 (276)
Q Consensus 191 VPLFL~~G~H~--~~DIp~~l~~l~~~~p~v~I~va~PLG~~p~L~~lL~dRl~eAl~~ 247 (276)
+|++++. .|. ..||....++..++.....+.+.+.||.+|.+++++.+++++.+..
T Consensus 268 ~P~~Fv~-D~lEtl~ei~~e~~~~~~~~G~~~~~~~~~ln~~~~~i~~l~~~v~~~~~~ 325 (333)
T PRK00035 268 VPPGFVS-DHLETLEEIDIEYREIAEEAGGEEFRRIPCLNDSPEFIEALADLVRENLQG 325 (333)
T ss_pred ECCeeec-cchhHHHHHHHHHHHHHHHcCCceEEECCCCCCCHHHHHHHHHHHHHHhcC
Confidence 9998666 884 4666666555554443347899999999999999999999997643
No 22
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=99.11 E-value=2.7e-10 Score=107.71 Aligned_cols=129 Identities=17% Similarity=0.199 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccccHHHHHHHHHhh-CCCccEEE
Q 023828 145 LKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAEAAKE-HPGVPYIV 223 (276)
Q Consensus 145 l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DIp~~l~~l~~~-~p~v~I~v 223 (276)
.+.+.+.|.++.....|..| |.|+.|+++++++++.+.|+++|+|+|+|++.+..+...+-+.+.+...+ .+..++++
T Consensus 75 a~~l~~~L~~~~~~~~V~~a-mry~~P~i~~~l~~l~~~g~~~ivvlPLyPqyS~~ttgs~~~~~~~~~~~~~~~~~~~~ 153 (316)
T PF00762_consen 75 AEALQQRLDERGVDVEVYYA-MRYGPPSIEDALEELKADGVDRIVVLPLYPQYSSSTTGSYLDEVERALKKSRPNPKVRF 153 (316)
T ss_dssp HHHHHHHHHHH-EEEEEEEE-ESSSSSBHHHHHHHHHHTT-SEEEEEESSSS--TTTHHHHHHHHHHHHHHTHSSSEEEE
T ss_pred HHHHHHHHHhcCCCeeEEEE-eccCCCCHHHHHHHHHHcCCCeEEEEeCCCchhHhhHHHHHHHHHHHHHhcCCCCeEEE
Confidence 33444444443324678888 67899999999999999999999999999999988876666666655433 35678999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCcC--CCcccc
Q 023828 224 TAPLGLHEQLVDVVNDRIKHCLSHAVGDADECVVCAGTDRCRLYG--AGLANK 274 (276)
Q Consensus 224 a~PLG~~p~L~~lL~dRl~eAl~~~~~~~~~~~vlvG~Gs~~~~~--~~~~~~ 274 (276)
.+++..+|.+++++.++|++++...+....+.+++..||-..-.- +||-|.
T Consensus 154 i~~~~~~p~yi~a~~~~i~~~l~~~~~~~~~~llfSaHglP~~~~~~~GdpY~ 206 (316)
T PF00762_consen 154 IPSFYDHPAYIEALAERIREALERFPRGEPDHLLFSAHGLPQRYVEDKGDPYP 206 (316)
T ss_dssp E---TT-HHHHHHHHHHHHHHHTTS-HCCCEEEEEEEE--BHHHHTCCT-SHH
T ss_pred eCCccCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEccCCCCccccccCCCChH
Confidence 999999999999999999999998752224789999999887554 566664
No 23
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=99.10 E-value=1.8e-09 Score=102.33 Aligned_cols=119 Identities=13% Similarity=0.145 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHcC---CccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccc----cccccccHHHHHHHHHhh
Q 023828 143 LMLKQFVAMFREKTG---YLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFP----GRHWCQDIPSLTAEAAKE 215 (276)
Q Consensus 143 ~~l~~lA~~L~~r~~---~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~----G~H~~~DIp~~l~~l~~~ 215 (276)
...+++++.|+++++ ...|..| |.++.|++++++++|.++|+++|+++|+|++. ..++.+++++.++.+...
T Consensus 74 ~~t~~q~~~l~~~l~~~~~~~V~~a-mry~~P~i~~~l~~l~~~G~~~iv~lPL~PqyS~~t~gs~~~~~~~~l~~~~~~ 152 (322)
T TIGR00109 74 QITEQQAHALEKRLPNEIDFKVYIA-MRYGEPFTEEAVKELLKDGVERAVVLPLYPHFSSSTTGSSFNELAEALKKLRSL 152 (322)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEe-eccCCCCHHHHHHHHHhcCCCeEEEEeCCcccccccHHHHHHHHHHHHHhcccC
Confidence 445566777777775 4678888 58999999999999999999999999999744 445566676666554322
Q ss_pred CCCccEEEeCCCCCCHHHHHHHHHHHHHHHhhcCCCCCceeEEEecCCC
Q 023828 216 HPGVPYIVTAPLGLHEQLVDVVNDRIKHCLSHAVGDADECVVCAGTDRC 264 (276)
Q Consensus 216 ~p~v~I~va~PLG~~p~L~~lL~dRl~eAl~~~~~~~~~~~vlvG~Gs~ 264 (276)
+ .++++.+++..+|.+++++.+++++++...+...+..+++..||-.
T Consensus 153 ~--~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfSaHglP 199 (322)
T TIGR00109 153 R--PTISVIESWYDNPKYIKALADSIKETLASFPEPDNAVLLFSAHGLP 199 (322)
T ss_pred C--CeEEEeCccccCcHHHHHHHHHHHHHHHhcCCcCCcEEEEeCCCCc
Confidence 2 4788999999999999999999999987764332237899999987
No 24
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=99.08 E-value=6.1e-10 Score=102.07 Aligned_cols=115 Identities=25% Similarity=0.354 Sum_probs=101.3
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHHHHHc-CCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccccHH
Q 023828 128 GVIIVDHGSRRRESNLMLKQFVAMFREKT-GYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIP 206 (276)
Q Consensus 128 aLLLV~HGSr~pea~~~l~~lA~~L~~r~-~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DIp 206 (276)
.++++++||+++.++..+..+++.+.+.. .+..+..+|.....|.+.+...++. .++++|+||||+.|.++.++++
T Consensus 127 ~vv~~~~Gs~~~~~~~~~~~va~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~vv~P~fL~~G~l~~~~~~ 203 (245)
T COG2138 127 RVVLEPRGSSDPIANAAVYRVARLLGEGTASWKAVITLFTGVAEPGLAGETARLR---YRRVVVLPYFLFDGLLTDRIRP 203 (245)
T ss_pred eEEEeccCCCcccchhHHHHHHHHHHhccCCceeeeeeeccccCcchhhhhhhcc---cCcEEEEEhhHhCchhhhhhHH
Confidence 39999999999999999999999999988 6667889999989999999888875 8999999999999999987665
Q ss_pred HHHHHHHhhCCCccEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 023828 207 SLTAEAAKEHPGVPYIVTAPLGLHEQLVDVVNDRIKHCLSH 247 (276)
Q Consensus 207 ~~l~~l~~~~p~v~I~va~PLG~~p~L~~lL~dRl~eAl~~ 247 (276)
+.. .+..++...+.+++|+|.+|.+++++.+|+.++...
T Consensus 204 ~~~--~~~~~~~~~i~~~~~lG~~p~l~~~~~~r~~~~~~~ 242 (245)
T COG2138 204 EVE--LRLAVPEGEIALARPLGTHPRLADAVLDRVREARAG 242 (245)
T ss_pred hhh--hhhccCCcceEecCcCCCCHHHHHHHHHHHHHHHhh
Confidence 543 555677789999999999999999999999998764
No 25
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=99.02 E-value=7e-09 Score=98.33 Aligned_cols=123 Identities=15% Similarity=0.174 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHcC--CccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccccHHHHHHHH-HhhCCCc
Q 023828 143 LMLKQFVAMFREKTG--YLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAEA-AKEHPGV 219 (276)
Q Consensus 143 ~~l~~lA~~L~~r~~--~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DIp~~l~~l-~~~~p~v 219 (276)
...+++++.|.++.+ ...|+.| |.|++|++++++++|.++|+++|+++|++...+..+....-+.+.+. ++.....
T Consensus 73 ~~T~~q~~~L~~~L~~~~~~V~~a-mry~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~~~~ 151 (320)
T COG0276 73 VITRAQAAALEERLDLPDFKVYLA-MRYGPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKELRGQP 151 (320)
T ss_pred HHHHHHHHHHHHHhCCCCccEEEe-ecCCCCcHHHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHHHHHHhcCCCC
Confidence 446677888888764 6788888 77899999999999999999999999999998877765444444333 2233457
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCc
Q 023828 220 PYIVTAPLGLHEQLVDVVNDRIKHCLSHAVGDADECVVCAGTDRCRLY 267 (276)
Q Consensus 220 ~I~va~PLG~~p~L~~lL~dRl~eAl~~~~~~~~~~~vlvG~Gs~~~~ 267 (276)
++++.+++..+|.+++++++.|++.+...+ ..+..+++..||=+..+
T Consensus 152 ~i~~I~~~~~~p~yI~a~a~~I~~~~~~~~-~~~~~llfSaHglP~~~ 198 (320)
T COG0276 152 KISTIPDYYDEPLYIEALADSIREKLAKHP-RDDDVLLFSAHGLPKRY 198 (320)
T ss_pred ceEEecCccCChHHHHHHHHHHHHHHHhcC-CCCeEEEEecCCCchhh
Confidence 899999999999999999999999999876 35578999999987743
No 26
>PLN02449 ferrochelatase
Probab=99.00 E-value=3.7e-09 Score=105.08 Aligned_cols=141 Identities=17% Similarity=0.116 Sum_probs=104.0
Q ss_pred eCCCCCchhHH-HHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccccHHHHHHH
Q 023828 133 DHGSRRRESNL-MLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAE 211 (276)
Q Consensus 133 ~HGSr~pea~~-~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DIp~~l~~ 211 (276)
+-||+-.+... ..+.+.+.|.+......|++| |.|..|+++++++++++.|+++|+|+|+|++....+....-+.+++
T Consensus 153 GGgSPL~~iT~~Qa~~Lq~~L~~~~~~~~V~~a-MRY~~P~iedal~~l~~~G~~~iVvLPLYPQyS~sTtgSs~~~l~~ 231 (485)
T PLN02449 153 GGGSPLRKITDEQAEALAKALEAKNLPAKVYVG-MRYWHPFTEEAIDQIKADGITKLVVLPLYPQFSISTSGSSLRLLES 231 (485)
T ss_pred CCCCchHHHHHHHHHHHHHHHhccCCCeEEEEh-hhcCCCCHHHHHHHHHhcCCCeEEEEECCcccccccHHHHHHHHHH
Confidence 55665433322 233444444433334678888 7889999999999999999999999999998877766555555554
Q ss_pred HHhhC---CCccEEEeCCCCCCHHHHHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCc--CCCcccc
Q 023828 212 AAKEH---PGVPYIVTAPLGLHEQLVDVVNDRIKHCLSHAVGDADECVVCAGTDRCRLY--GAGLANK 274 (276)
Q Consensus 212 l~~~~---p~v~I~va~PLG~~p~L~~lL~dRl~eAl~~~~~~~~~~~vlvG~Gs~~~~--~~~~~~~ 274 (276)
+.... ....+++.+.+..+|.+++++.++|++.+...+...+..+++..||-..-+ .+||-|.
T Consensus 232 ~~~~~~~~~~~~~~~I~~~~~~p~yI~A~a~~I~~~l~~~~~~~~~~LlFSAHGlP~~~v~~~GDpY~ 299 (485)
T PLN02449 232 IFREDEYLVNMQHTVIPSWYQREGYVKAMADLIKKELAKFSDPEEVHIFFSAHGVPVSYVEEAGDPYK 299 (485)
T ss_pred HHhhcccccCCeeEEeccccCChHHHHHHHHHHHHHHHhccCcCCcEEEEecCCChhhhhhhcCCChH
Confidence 43222 245789999999999999999999999998764444567999999998763 5678775
No 27
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=98.59 E-value=1.2e-06 Score=83.03 Aligned_cols=120 Identities=16% Similarity=0.178 Sum_probs=87.9
Q ss_pred CcEEEEEeCCCCCc------hhHHHHHHHHHHHHHHcC-CccEEEEEeec------CCCCHHHHHHHHHHcCCCeEEEEe
Q 023828 126 KDGVIIVDHGSRRR------ESNLMLKQFVAMFREKTG-YLIVEPAHMEL------AEPSIKDAFGSCVQQGANRVIVSP 192 (276)
Q Consensus 126 ~~aLLLV~HGSr~p------ea~~~l~~lA~~L~~r~~-~~~V~~AfLE~------a~PsL~eaLe~L~a~G~~~VvVVP 192 (276)
+..||+-+||-+.. .......+.++.|.++.+ ...+.+||... -+|++++.|+++.++|+++|+|+|
T Consensus 188 ~~~llfSaHglP~~~~~~Gd~Y~~~~~~ta~~l~~~l~~~~~~~~~fQS~~g~~~Wl~P~~~~~l~~l~~~G~k~V~vvP 267 (322)
T TIGR00109 188 NAVLLFSAHGLPQSYVDEGDPYPAECEATTRLIAEKLGFPNEYRLTWQSRVGPEPWLGPYTEELLEKLGEQGVQHIVVVP 267 (322)
T ss_pred CcEEEEeCCCCchhHhhCCCChHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcCCCCHHHHHHHHHHcCCceEEEEC
Confidence 34789999998721 123567888888888876 34688999884 379999999999999999999998
Q ss_pred e-cccccccccccHHHHHHHHHhhCCCccEEEeCCCCCCHHHHHHHHHHHHHHH
Q 023828 193 F-FLFPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVDVVNDRIKHCL 245 (276)
Q Consensus 193 L-FL~~G~H~~~DIp~~l~~l~~~~p~v~I~va~PLG~~p~L~~lL~dRl~eAl 245 (276)
+ |+.....+..||.-+.++...+..+-.+.+.+.|+.+|.++++|.+++++.+
T Consensus 268 ~gFv~D~lETl~ei~~e~~~~~~~~G~~~~~~vp~lN~~p~fi~~l~~~v~~~~ 321 (322)
T TIGR00109 268 IGFTADHLETLYEIDEEYREVAEDAGGDKYQRCPALNAKPEFIEAMATLVKKKL 321 (322)
T ss_pred CcccccchhHHHhhhHHHHHHHHHcCCCeEEECCCCCCCHHHHHHHHHHHHHhh
Confidence 8 2233333334444333344433333349999999999999999999998864
No 28
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=98.50 E-value=7.8e-07 Score=76.07 Aligned_cols=97 Identities=20% Similarity=0.181 Sum_probs=67.3
Q ss_pred EeCCCCCchhH-HHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccccHHHHHH
Q 023828 132 VDHGSRRRESN-LMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTA 210 (276)
Q Consensus 132 V~HGSr~pea~-~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DIp~~l~ 210 (276)
+++||+-.... ...+.+.+.|.+......|..| |+++.|+++++++++.+.|+++|+|+|+|++....+.....+.+.
T Consensus 60 ig~~SPL~~~t~~q~~~l~~~L~~~~~~~~v~~a-mry~~P~i~~~l~~l~~~g~~~iivlPl~P~~S~~Tt~s~~~~~~ 138 (159)
T cd03411 60 IGGGSPLNEITRAQAEALEKALDERGIDVKVYLA-MRYGPPSIEEALEELKADGVDRIVVLPLYPQYSASTTGSYLDEVE 138 (159)
T ss_pred cCCCCccHHHHHHHHHHHHHHHhccCCCcEEEeh-HhcCCCCHHHHHHHHHHcCCCEEEEEECCcccccccHHHHHHHHH
Confidence 45588754333 3344555555443323567776 999999999999999999999999999999999887766666655
Q ss_pred HHHhhC-CCccEEEeCCCCC
Q 023828 211 EAAKEH-PGVPYIVTAPLGL 229 (276)
Q Consensus 211 ~l~~~~-p~v~I~va~PLG~ 229 (276)
+...+. ...++++.+++..
T Consensus 139 ~~~~~~~~~~~~~~i~~~~~ 158 (159)
T cd03411 139 RALKKLRPAPELRVIRSFYD 158 (159)
T ss_pred HHHHhcCCCCcEEEeCcccc
Confidence 443332 2356677766654
No 29
>PLN02449 ferrochelatase
Probab=98.13 E-value=6.2e-05 Score=75.33 Aligned_cols=124 Identities=15% Similarity=0.146 Sum_probs=94.0
Q ss_pred CCCcEEEEEeCCCCCc---h----hHHHHHHHHHHHHHHcCC----ccEEEEEee-cC-----CCCHHHHHHHHHHcCCC
Q 023828 124 GDKDGVIIVDHGSRRR---E----SNLMLKQFVAMFREKTGY----LIVEPAHME-LA-----EPSIKDAFGSCVQQGAN 186 (276)
Q Consensus 124 ~~~~aLLLV~HGSr~p---e----a~~~l~~lA~~L~~r~~~----~~V~~AfLE-~a-----~PsL~eaLe~L~a~G~~ 186 (276)
.++..||+-+||-+.. + .....++.++.+.++.+. ..+.+||-. .+ .|+++++|++|.++|++
T Consensus 274 ~~~~~LlFSAHGlP~~~v~~~GDpY~~q~~~ta~lI~~~L~~~~~~~~~~layQSR~Gp~eWL~P~t~d~L~~L~~~Gvk 353 (485)
T PLN02449 274 PEEVHIFFSAHGVPVSYVEEAGDPYKAQMEECVDLIMEELKARGILNRHTLAYQSRVGPVEWLKPYTDETIVELGKKGVK 353 (485)
T ss_pred cCCcEEEEecCCChhhhhhhcCCChHHHHHHHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 4567899999998743 1 235677777888777653 347888877 33 69999999999999999
Q ss_pred eEEEEee-cccccccccccHHHHHHHHHhhCCCccEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 023828 187 RVIVSPF-FLFPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVDVVNDRIKHCLSH 247 (276)
Q Consensus 187 ~VvVVPL-FL~~G~H~~~DIp~~l~~l~~~~p~v~I~va~PLG~~p~L~~lL~dRl~eAl~~ 247 (276)
+|+|+|. |......+..||--+.++...+.....+...+.|+.+|.+++.|.+.+.+++..
T Consensus 354 ~VlvvPigFvSDhiETL~EiDiE~re~a~e~G~~~~~rVP~LN~~p~FI~~La~lV~~~l~~ 415 (485)
T PLN02449 354 SLLAVPISFVSEHIETLEEIDMEYRELALESGIENWGRVPALGCEPTFISDLADAVIEALPY 415 (485)
T ss_pred eEEEECCcccccchHHHHHHHHHHHHHHHHcCCceEEEcCCCCCCHHHHHHHHHHHHHHhhc
Confidence 9999987 444445555556555555555544446899999999999999999999998874
No 30
>PRK12435 ferrochelatase; Provisional
Probab=98.11 E-value=6.6e-05 Score=71.17 Aligned_cols=122 Identities=15% Similarity=0.132 Sum_probs=92.2
Q ss_pred CCcEEEEEeCCCCCc------hhHHHHHHHHHHHHHHcCCccEEEEEeec-C------CCCHHHHHHHHHHc-CCCeEEE
Q 023828 125 DKDGVIIVDHGSRRR------ESNLMLKQFVAMFREKTGYLIVEPAHMEL-A------EPSIKDAFGSCVQQ-GANRVIV 190 (276)
Q Consensus 125 ~~~aLLLV~HGSr~p------ea~~~l~~lA~~L~~r~~~~~V~~AfLE~-a------~PsL~eaLe~L~a~-G~~~VvV 190 (276)
++..||+.+||-+.. .......+.++.+.++.+...+.++|-.. . +|++.+.|+++.++ |+++|+|
T Consensus 173 ~~~~llfSaHslP~~~i~~GDpY~~q~~~t~~~v~~~l~~~~~~l~yQSr~~g~~~WL~P~t~d~l~~l~~~~G~k~v~v 252 (311)
T PRK12435 173 EKAVLIVSAHSLPEKIIAAGDPYPDQLEETADLIAEQANVEHYAIGWQSEGNTPDPWLGPDVQDLTRDLYEEHGYKSFIY 252 (311)
T ss_pred cceEEEEecCCCchhHhhCCCCHHHHHHHHHHHHHHHcCCCCCeEeeecCCCCCCCCCCCCHHHHHHHHHHhcCCceEEE
Confidence 346899999998743 13355677777787777655577888774 2 58999999999887 9999999
Q ss_pred Ee-ecccccccccccHHHHHHHHHhhCCCccEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 023828 191 SP-FFLFPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVDVVNDRIKHCLSH 247 (276)
Q Consensus 191 VP-LFL~~G~H~~~DIp~~l~~l~~~~p~v~I~va~PLG~~p~L~~lL~dRl~eAl~~ 247 (276)
+| -|......+..||--+.++..++. |.++...+.++.+|.+++.|.+.+++.+..
T Consensus 253 vpigFvsDhlETl~Eldie~~e~a~~~-G~~~~r~~~lN~~p~fi~~La~lv~~~~~~ 309 (311)
T PRK12435 253 TPVGFVAEHLEVLYDNDYECKVVTDEI-GAKYYRPEMPNADPLFIDALADVVLKKLKS 309 (311)
T ss_pred ECCchhhhhHHHHHHHHHHHHHHHHHc-CCcEEeccCCCCCHHHHHHHHHHHHHHHhc
Confidence 98 566666776666765555554443 356788889999999999999999987643
No 31
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=98.04 E-value=3.9e-05 Score=72.77 Aligned_cols=121 Identities=20% Similarity=0.256 Sum_probs=87.2
Q ss_pred CCcEEEEEeCCCCCch-------hHHHHHHHHHHHHHHcCCccEEEEEeec------CCCCHHHHHHHHHHcCCCeEEEE
Q 023828 125 DKDGVIIVDHGSRRRE-------SNLMLKQFVAMFREKTGYLIVEPAHMEL------AEPSIKDAFGSCVQQGANRVIVS 191 (276)
Q Consensus 125 ~~~aLLLV~HGSr~pe-------a~~~l~~lA~~L~~r~~~~~V~~AfLE~------a~PsL~eaLe~L~a~G~~~VvVV 191 (276)
+...+|+-+||-+... ......+.++.++++.+...+.+||-.. -.|++++.++++.++|+++|+|+
T Consensus 182 ~~~~llfSaHglP~~~~~~~GdpY~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G~~~V~v~ 261 (316)
T PF00762_consen 182 EPDHLLFSAHGLPQRYVEDKGDPYPAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELAKEGVKRVVVV 261 (316)
T ss_dssp CCEEEEEEEE--BHHHHTCCT-SHHHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHHHCT-SEEEEE
T ss_pred CCCEEEEccCCCCccccccCCCChHHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHHhcCCCeEEEE
Confidence 3689999999987421 2356788888899998877799999862 25899999999999999999999
Q ss_pred ee-cccccccccccHHHHHHHHHhhCCCccEEEeCCCCCCHHHHHHHHHHHHHHH
Q 023828 192 PF-FLFPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVDVVNDRIKHCL 245 (276)
Q Consensus 192 PL-FL~~G~H~~~DIp~~l~~l~~~~p~v~I~va~PLG~~p~L~~lL~dRl~eAl 245 (276)
|. |......+..||.-+.++..++..+-.+.+.+.++.+|.+++.|.+.+++.+
T Consensus 262 p~gFv~D~lETl~eidie~re~~~~~G~~~~~~ip~lN~~~~fi~~La~~v~~~~ 316 (316)
T PF00762_consen 262 PPGFVSDCLETLYEIDIEYRELAEEAGGEEFVRIPCLNDSPEFIEALADLVREHL 316 (316)
T ss_dssp ETT-SSSSHHHHCCCCCHHHHHHHHHTCCEEEE---STT-HHHHHHHHHHHHHHH
T ss_pred CCccccccHhHHHHHHHHHHHHHHHcCCceEEEeCCCCCCHHHHHHHHHHHHhCc
Confidence 76 5566666666775455555444333488999999999999999999998764
No 32
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=97.70 E-value=0.00097 Score=63.57 Aligned_cols=144 Identities=12% Similarity=0.104 Sum_probs=103.5
Q ss_pred EEeCCCCCchhHHH-HHHHHHHHHHHcCC---ccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeeccccccccc-ccH
Q 023828 131 IVDHGSRRRESNLM-LKQFVAMFREKTGY---LIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWC-QDI 205 (276)
Q Consensus 131 LV~HGSr~pea~~~-l~~lA~~L~~r~~~---~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~-~DI 205 (276)
=||=||+-..+.+. -..+...|.+..|. -.+++|| .|..|.-+++++++.+.|++++|+.|.+....-.+. ..+
T Consensus 97 ~IGGGSPir~wT~~Q~~~m~k~Ld~~~petaphk~YVgf-RY~~PlTEea~~qikkd~v~r~VafsqYPQyS~sTsGSSl 175 (395)
T KOG1321|consen 97 EIGGGSPIRKWTEYQAEEMCKILDKKCPETAPHKPYVGF-RYAHPLTEEALEQIKKDGVTRAVAFSQYPQYSCSTSGSSL 175 (395)
T ss_pred hccCCCchhHHHHHHHHHHHHHHHhcCcccCCccceeee-eecCcccHHHHHHHHhcCceeEEeeccCCceeeecCcccH
Confidence 46788887666543 55666667666643 2467784 578999999999999999999999999996553332 223
Q ss_pred HHHHHHHHhh--CCCccEEEeCCCCCCHHHHHHHHHHHHHHHhhcCCCC--CceeEEEecCCCCCc-CCCccccC
Q 023828 206 PSLTAEAAKE--HPGVPYIVTAPLGLHEQLVDVVNDRIKHCLSHAVGDA--DECVVCAGTDRCRLY-GAGLANKT 275 (276)
Q Consensus 206 p~~l~~l~~~--~p~v~I~va~PLG~~p~L~~lL~dRl~eAl~~~~~~~--~~~~vlvG~Gs~~~~-~~~~~~~~ 275 (276)
.++...+++. -++++..+..-++.++.+++.++++|++-|...+.+. +-.+++..||-.--+ +.||.|+.
T Consensus 176 n~l~r~~r~~~~~~~~~wsiIdrW~t~~glIkafA~~I~keL~~F~~~~r~~VVIlFSAHslPms~Vn~GDpY~~ 250 (395)
T KOG1321|consen 176 NELWRQFREDGYERDIKWSIIDRWPTREGLIKAFAENIEKELQTFPEPVRDDVVILFSAHSLPMSVVNAGDPYPA 250 (395)
T ss_pred HHHHHHHHhcCcccCCceEeeccccccchHHHHHHHHHHHHHHhcCCcccccEEEEEecCCCcHHHHhcCCCcHH
Confidence 3333444432 2467888999999999999999999999999988763 346778888754332 34566653
No 33
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=97.15 E-value=0.0099 Score=56.87 Aligned_cols=122 Identities=20% Similarity=0.259 Sum_probs=91.9
Q ss_pred CCCcEEEEEeCCCCCch------hHHHHHHHHHHHHHHcC--CccEEEEEee------cCCCCHHHHHHHHHHcCCCeEE
Q 023828 124 GDKDGVIIVDHGSRRRE------SNLMLKQFVAMFREKTG--YLIVEPAHME------LAEPSIKDAFGSCVQQGANRVI 189 (276)
Q Consensus 124 ~~~~aLLLV~HGSr~pe------a~~~l~~lA~~L~~r~~--~~~V~~AfLE------~a~PsL~eaLe~L~a~G~~~Vv 189 (276)
.++.-+|+=+||=+... .....++.++.|+++.+ .....++|-. =-+|+.++.+++|.++|+++|+
T Consensus 182 ~~~~~llfSaHglP~~~~~~GDpY~~q~~~t~~li~e~lg~~~~~~~~~~QS~~G~~~WL~P~t~~~l~~L~~~g~k~ii 261 (320)
T COG0276 182 RDDDVLLFSAHGLPKRYIDEGDPYPQQCQETTRLIAEALGLPEEEYDLTFQSRFGPEPWLQPYTDDLLEELGEKGVKKII 261 (320)
T ss_pred CCCeEEEEecCCCchhhhhcCCchHHHHHHHHHHHHHHcCCCchheeEEeecCCCCCCCCCCCHHHHHHHHHhcCCCeEE
Confidence 36778999999987532 23567778888888887 4456666655 2268999999999999999999
Q ss_pred EEee-cccccccccccHHHHHHHHHhhCCCccEEEeCCCCCCHHHHHHHHHHHHHHH
Q 023828 190 VSPF-FLFPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVDVVNDRIKHCL 245 (276)
Q Consensus 190 VVPL-FL~~G~H~~~DIp~~l~~l~~~~p~v~I~va~PLG~~p~L~~lL~dRl~eAl 245 (276)
|+|. |...-..+..||-.+..+......+..+...+.++.+|++++.+++-+++.+
T Consensus 262 v~pigFvsDhlETL~Eid~e~~e~~~~~Gg~~y~rip~lN~~p~fi~~la~lv~~~~ 318 (320)
T COG0276 262 VVPIGFVSDHLETLYEIDHEYRELAEEAGGKKYVRIPCLNDSPEFIDALADLVRELL 318 (320)
T ss_pred EECCchhhhhHHHHHHHHHHHHHHHHHhCCccEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 9987 3333344445665555555555556889999999999999999999888764
No 34
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=87.28 E-value=4.1 Score=39.46 Aligned_cols=121 Identities=12% Similarity=0.180 Sum_probs=76.7
Q ss_pred CCCcEEEEEeCCCCCchh------HHHHHHHHHHHHHH----cCCc---cEEEEEeecCCCCHHHHHHHHHHcCCCeEEE
Q 023828 124 GDKDGVIIVDHGSRRRES------NLMLKQFVAMFREK----TGYL---IVEPAHMELAEPSIKDAFGSCVQQGANRVIV 190 (276)
Q Consensus 124 ~~~~aLLLV~HGSr~pea------~~~l~~lA~~L~~r----~~~~---~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvV 190 (276)
.++.-|++-+||-+.... ..++...++.+.++ .++. .-.++=+.--.|.-+++++.|-.+|.+.+++
T Consensus 225 r~~VVIlFSAHslPms~Vn~GDpY~~Ei~atv~~iMeeL~~~N~y~lawQSkVGP~pWL~p~Tde~i~~lgk~g~knll~ 304 (395)
T KOG1321|consen 225 RDDVVILFSAHSLPMSVVNAGDPYPAEIAATVDLIMEELKYKNPYRLAWQSKVGPLPWLGPATDEVIEGLGKKGVKNLLL 304 (395)
T ss_pred cccEEEEEecCCCcHHHHhcCCCcHHHHHHHHHHHHHHhccCCcchhhhhcccCCccccccchHHHHHHHHhhcccceEE
Confidence 356778888999764322 23444444444444 4432 1233444444688899999999999999999
Q ss_pred EeecccccccccccHHHH----HHHHHhhCCCccEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 023828 191 SPFFLFPGRHWCQDIPSL----TAEAAKEHPGVPYIVTAPLGLHEQLVDVVNDRIKHCLSH 247 (276)
Q Consensus 191 VPLFL~~G~H~~~DIp~~----l~~l~~~~p~v~I~va~PLG~~p~L~~lL~dRl~eAl~~ 247 (276)
||.-+. ..|.. .+.++ .+++.+..- -.+.-++.|+.+|.+++.+++-+.+.+..
T Consensus 305 VPIaFv-SeHIE-TL~EiD~ey~e~a~k~gv-e~~~Rv~sln~~p~fI~~lADlV~ehL~s 362 (395)
T KOG1321|consen 305 VPIAFV-SEHIE-TLHEIDIEYIEEALKKGV-ENWKRVESLNGNPTFIEGLADLVAEHLKS 362 (395)
T ss_pred Eeehhh-hHHHH-HHHHhhHHHHHHHHHHhh-hhheeccCCCCCccHHHHHHHHHHHhhhh
Confidence 998664 44543 23332 122222211 15578899999999988888888887764
No 35
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=80.56 E-value=7.8 Score=33.34 Aligned_cols=40 Identities=15% Similarity=0.171 Sum_probs=21.3
Q ss_pred cHHHHHHHHHhhCCCccEEEeCCCCCCHHHHHHHHHHHHH
Q 023828 204 DIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVDVVNDRIKH 243 (276)
Q Consensus 204 DIp~~l~~l~~~~p~v~I~va~PLG~~p~L~~lL~dRl~e 243 (276)
.+.+..+.++++||++++.-..+-..++.-.+.+.++|++
T Consensus 60 ~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~ 99 (172)
T PF03808_consen 60 VLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINA 99 (172)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHH
Confidence 3444555566667766665443333355555555555544
No 36
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=70.47 E-value=23 Score=30.91 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=8.2
Q ss_pred HHHHHHHhhCCCccEE
Q 023828 207 SLTAEAAKEHPGVPYI 222 (276)
Q Consensus 207 ~~l~~l~~~~p~v~I~ 222 (276)
+..+.++++||++++.
T Consensus 63 ~~~~~l~~~yP~l~i~ 78 (177)
T TIGR00696 63 QLKVKLIKEYPKLKIV 78 (177)
T ss_pred HHHHHHHHHCCCCEEE
Confidence 3344455556655544
No 37
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=62.97 E-value=31 Score=34.12 Aligned_cols=53 Identities=11% Similarity=0.046 Sum_probs=41.6
Q ss_pred ccEEEeCCCCCCHHHHHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCcCCCccccC
Q 023828 219 VPYIVTAPLGLHEQLVDVVNDRIKHCLSHAVGDADECVVCAGTDRCRLYGAGLANKT 275 (276)
Q Consensus 219 v~I~va~PLG~~p~L~~lL~dRl~eAl~~~~~~~~~~~vlvG~Gs~~~~~~~~~~~~ 275 (276)
..++.....|.+|.+.+++..++.+-..+ .-++..+++|.+..|+ .|..-|++
T Consensus 115 Agit~v~~~G~dPGi~nv~a~~a~~~~~~---~i~si~iy~g~~g~~~-~~~l~ya~ 167 (389)
T COG1748 115 AGITAVLGCGFDPGITNVLAAYAAKELFD---EIESIDIYVGGLGEHG-DNPLGYAT 167 (389)
T ss_pred cCeEEEcccCcCcchHHHHHHHHHHHhhc---cccEEEEEEecCCCCC-CCCcccee
Confidence 46788899999999999999887765553 4568899999999998 55555543
No 38
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=60.58 E-value=34 Score=33.47 Aligned_cols=76 Identities=17% Similarity=0.209 Sum_probs=53.1
Q ss_pred EEEeecccccccccccHHHHHHHHHhhCCCccEEEeCCCCCCH------HHHHHHHHHHHHHHh-hcCCCCCceeEEEec
Q 023828 189 IVSPFFLFPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLHE------QLVDVVNDRIKHCLS-HAVGDADECVVCAGT 261 (276)
Q Consensus 189 vVVPLFL~~G~H~~~DIp~~l~~l~~~~p~v~I~va~PLG~~p------~L~~lL~dRl~eAl~-~~~~~~~~~~vlvG~ 261 (276)
-|+|+--..+.. ++.+.+.++.|...+.+.-+.+....|+|| .+..+|-+..++.+. .-+..+|..+.|||=
T Consensus 155 ~V~pV~sGs~TL-KDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vIG~E~k~Qile~egrlPD~vvACVGG 233 (396)
T COG0133 155 EVVPVTSGSGTL-KDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGG 233 (396)
T ss_pred eEEEeccCCchH-HHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccC
Confidence 567775544444 445778899998877776778899999996 455566666665543 345567888999998
Q ss_pred CCCC
Q 023828 262 DRCR 265 (276)
Q Consensus 262 Gs~~ 265 (276)
||--
T Consensus 234 GSNA 237 (396)
T COG0133 234 GSNA 237 (396)
T ss_pred Ccch
Confidence 8843
No 39
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=57.72 E-value=1.1e+02 Score=27.72 Aligned_cols=89 Identities=16% Similarity=0.101 Sum_probs=55.3
Q ss_pred EEEEEeCCCC-CchhHHHHHHHHHHHHHHcCCccEEEEEeecC-CC-CHHHHHHHHHHcCCCeEEEEeeccccccccccc
Q 023828 128 GVIIVDHGSR-RRESNLMLKQFVAMFREKTGYLIVEPAHMELA-EP-SIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQD 204 (276)
Q Consensus 128 aLLLV~HGSr-~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a-~P-sL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~D 204 (276)
++|+ . |.. +..++....+=..++++..+ +++-+.|-. .+ ..++.++.+.++|++=|+. .|. .
T Consensus 3 a~l~-~-g~~~D~~~n~~~~~G~~~~~~~~g---v~~~~~e~~~~~~~~~~~i~~~~~~g~dlIi~------~g~----~ 67 (258)
T cd06353 3 AFVY-V-GPIGDQGWNYAHDEGRKAAEKALG---VEVTYVENVPEGADAERVLRELAAQGYDLIFG------TSF----G 67 (258)
T ss_pred EEEE-e-CCCCccchhHHHHHHHHHHHHhcC---CeEEEEecCCchHhHHHHHHHHHHcCCCEEEE------Cch----h
Confidence 4444 3 554 66788776666666666543 455556633 22 3688899999999876666 222 2
Q ss_pred HHHHHHHHHhhCCCccEEEeCCCCCCH
Q 023828 205 IPSLTAEAAKEHPGVPYIVTAPLGLHE 231 (276)
Q Consensus 205 Ip~~l~~l~~~~p~v~I~va~PLG~~p 231 (276)
+.+.+.+..++||+..+.+.......|
T Consensus 68 ~~~~~~~vA~~~p~~~F~~~d~~~~~~ 94 (258)
T cd06353 68 FMDAALKVAKEYPDVKFEHCSGYKTAP 94 (258)
T ss_pred hhHHHHHHHHHCCCCEEEECCCCCCCC
Confidence 334556667788988887755433333
No 40
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=57.25 E-value=76 Score=29.04 Aligned_cols=99 Identities=15% Similarity=0.170 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEE-eecccccccccccHHHHHHHHHhhCCCccEEEe
Q 023828 146 KQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVS-PFFLFPGRHWCQDIPSLTAEAAKEHPGVPYIVT 224 (276)
Q Consensus 146 ~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVV-PLFL~~G~H~~~DIp~~l~~l~~~~p~v~I~va 224 (276)
.++.+.+++..+..++.. | ....++.|.+.|+++|.|+ || ..|+.+.+.++-+. .|+++.-.
T Consensus 89 ~~~~~~i~~~~~g~p~tt-------~-~~A~~~AL~alg~~RIalvTPY--------~~~v~~~~~~~l~~-~G~eV~~~ 151 (239)
T TIGR02990 89 DEVTRAINAAKPGTPVVT-------P-SSAAVDGLAALGVRRISLLTPY--------TPETSRPMAQYFAV-RGFEIVNF 151 (239)
T ss_pred HHHHHHHHhcCCCCCeeC-------H-HHHHHHHHHHcCCCEEEEECCC--------cHHHHHHHHHHHHh-CCcEEeee
Confidence 356667766444444422 2 5566777777899999887 64 45677766655433 25666555
Q ss_pred CCCCCC--HHHHHHHHHHHHHHHhhcCCCCCceeEEEec
Q 023828 225 APLGLH--EQLVDVVNDRIKHCLSHAVGDADECVVCAGT 261 (276)
Q Consensus 225 ~PLG~~--p~L~~lL~dRl~eAl~~~~~~~~~~~vlvG~ 261 (276)
..+|.. ..+.++=-+.+.++..++..+.-+++++.+.
T Consensus 152 ~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCT 190 (239)
T TIGR02990 152 TCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCT 190 (239)
T ss_pred eccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 556652 2344444445555555443222356666543
No 41
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=54.90 E-value=1.5e+02 Score=27.07 Aligned_cols=121 Identities=12% Similarity=-0.010 Sum_probs=69.0
Q ss_pred hhHHHHHHH-HHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccccHHHHHHHHHhhCCC
Q 023828 140 ESNLMLKQF-VAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAEAAKEHPG 218 (276)
Q Consensus 140 ea~~~l~~l-A~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DIp~~l~~l~~~~p~ 218 (276)
.....+.+. ++.|.+..... -.+|.. ..-++.+.++.+.....+.+.|||+.=..|.....+..+....+.+++.+
T Consensus 33 ~~~~~l~~~aA~~L~~~l~~~-~~iGv~--wG~Tl~~~~~~l~~~~~~~~~vV~l~Gg~~~~~~~~~~~i~~~lA~~~g~ 109 (255)
T PF04198_consen 33 DILESLGEAAAEYLSELLKDG-DVIGVG--WGRTLYAVANHLPPKSLPNVTVVPLIGGVGNSNSYQANEIARRLAEKLGG 109 (255)
T ss_dssp HHHHHHHHHHHHHHHHH--TT-EEEEE---TSHHHHHHHHTS--SSSSCEEEEESBSBTTTSSGGSHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhCCCC-CEEEEc--chHHHHHHHHhcCccCCCCcEEEECCCCCCCCCCcCHHHHHHHHHHHhCC
Confidence 333444443 34555554322 234422 34568888888877668899999998777765445666667777666544
Q ss_pred c-cEEEeCCCCCCHHHHHHHHHH--HHHHHhhcCCCCCceeEEEecCCCCC
Q 023828 219 V-PYIVTAPLGLHEQLVDVVNDR--IKHCLSHAVGDADECVVCAGTDRCRL 266 (276)
Q Consensus 219 v-~I~va~PLG~~p~L~~lL~dR--l~eAl~~~~~~~~~~~vlvG~Gs~~~ 266 (276)
- .+..+|-+-.++.+.+.+.+. +++.+..... -=++++|-|+..+
T Consensus 110 ~~~~l~aP~~~~s~~~~~~l~~~~~i~~~l~~~~~---~dial~giG~~~~ 157 (255)
T PF04198_consen 110 KYYFLPAPAFVDSPELRDALLAEPSIREVLDLARK---ADIALVGIGSPSS 157 (255)
T ss_dssp EEE---SBSB-SSHHHHHHHHTSHHHHHHHHHHCT----SEEEEEEEEHHH
T ss_pred cEEEEeCCccCCCHHHHHHHHhChHHHHHHHHHHh---CCEEEEecCCCCC
Confidence 3 334566677889887776643 5555554321 1277888887665
No 42
>PRK05926 hypothetical protein; Provisional
Probab=53.34 E-value=1.7e+02 Score=28.51 Aligned_cols=86 Identities=14% Similarity=0.124 Sum_probs=51.9
Q ss_pred CcEEEEEeCCCCCch-hHHHHHHHHHHHHHHcCCccEEEEEe---ec------CCCCHHHHHHHHHHcCCCeEEEE----
Q 023828 126 KDGVIIVDHGSRRRE-SNLMLKQFVAMFREKTGYLIVEPAHM---EL------AEPSIKDAFGSCVQQGANRVIVS---- 191 (276)
Q Consensus 126 ~~aLLLV~HGSr~pe-a~~~l~~lA~~L~~r~~~~~V~~AfL---E~------a~PsL~eaLe~L~a~G~~~VvVV---- 191 (276)
-+-+.||+ |-. |+ .-+.+.++.+.+++.+|. +.++.+ |+ ..-+.++.+++|++.|.+++.-.
T Consensus 115 ~~ei~iv~-G~~-p~~~~e~~~e~i~~Ik~~~p~--i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi 190 (370)
T PRK05926 115 ITETHIVA-GCF-PSCNLAYYEELFSKIKQNFPD--LHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEI 190 (370)
T ss_pred CCEEEEEe-CcC-CCCCHHHHHHHHHHHHHhCCC--eeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchh
Confidence 45577775 543 43 335577888889988775 444433 21 12357999999999999876542
Q ss_pred -----eecccccccccccHHHHHHHHHhh
Q 023828 192 -----PFFLFPGRHWCQDIPSLTAEAAKE 215 (276)
Q Consensus 192 -----PLFL~~G~H~~~DIp~~l~~l~~~ 215 (276)
.=++.++..+..+--+.++.+++.
T Consensus 191 ~~e~~r~~~~p~~~t~~e~l~~i~~a~~~ 219 (370)
T PRK05926 191 LVDEIRETLAPGRLSSQGFLEIHKTAHSL 219 (370)
T ss_pred cCHHHHHhhCCCCCCHHHHHHHHHHHHHc
Confidence 323455555433343445555543
No 43
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.05 E-value=75 Score=25.66 Aligned_cols=64 Identities=9% Similarity=0.067 Sum_probs=51.2
Q ss_pred chhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeeccccccccc
Q 023828 139 RESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWC 202 (276)
Q Consensus 139 pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~ 202 (276)
|.+....+.+...|+.++|..+..+-|++...|..++...++...=..+=...|+.+..+.-+.
T Consensus 23 PtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivvedeiVa 86 (106)
T COG4837 23 PTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVEDEIVA 86 (106)
T ss_pred CcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEEcceEee
Confidence 5667789999999999999988999999998888888888876554556678888886665543
No 44
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=50.89 E-value=1.8e+02 Score=29.58 Aligned_cols=70 Identities=11% Similarity=0.152 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHH----HHcCCCeEEEEeecccccccccccHHHHHHHHHhhCC
Q 023828 142 NLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSC----VQQGANRVIVSPFFLFPGRHWCQDIPSLTAEAAKEHP 217 (276)
Q Consensus 142 ~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L----~a~G~~~VvVVPLFL~~G~H~~~DIp~~l~~l~~~~p 217 (276)
-+.++.+.+.|+...|...+.+=|. .++|++.+-|-++ .+.|+++|.+- +.|.+..+| ++..+.++..+.
T Consensus 93 ~eqi~~Ml~~lk~e~p~~~~aIq~t-GGEPTvr~DL~eiv~~a~e~g~~hVqin----TnGirlA~~-~~~~~~l~~ag~ 166 (475)
T COG1964 93 LEQIREMLRNLKKEHPVGANAVQFT-GGEPTLRDDLIEIIKIAREEGYDHVQLN----TNGIRLAFD-PEYVKKLREAGV 166 (475)
T ss_pred HHHHHHHHHHHHhcCCCCCceeEec-CCCccchhhHHHHHHHHhhcCccEEEEc----cCceeeccC-HHHHHHHHhcCC
Confidence 3668888888988877544555444 4899987666555 45689999864 578776654 677777776653
No 45
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=50.72 E-value=45 Score=29.48 Aligned_cols=79 Identities=10% Similarity=0.214 Sum_probs=38.8
Q ss_pred HHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeeccc-ccccccccHHHHHHHHHhhCCCccEEEeCCCC
Q 023828 150 AMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLF-PGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLG 228 (276)
Q Consensus 150 ~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~-~G~H~~~DIp~~l~~l~~~~p~v~I~va~PLG 228 (276)
..+..+.+...+-.+|-- .--++..+.+++++---+++++=+..- .-..+..-+...++.+++.+|+..|.+..++.
T Consensus 26 ~~~aR~l~~~~iNLGfsG--~~~le~~~a~~ia~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~ 103 (178)
T PF14606_consen 26 AILARRLGLDVINLGFSG--NGKLEPEVADLIAEIDADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVSPIP 103 (178)
T ss_dssp HHHHHHHT-EEEEEE-TC--CCS--HHHHHHHHHS--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE---
T ss_pred HHHHHHcCCCeEeeeecC--ccccCHHHHHHHhcCCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCC
Confidence 344455555556677643 223444443333332237777766664 22333344556678889999999998888666
Q ss_pred CC
Q 023828 229 LH 230 (276)
Q Consensus 229 ~~ 230 (276)
..
T Consensus 104 ~~ 105 (178)
T PF14606_consen 104 YP 105 (178)
T ss_dssp -T
T ss_pred cc
Confidence 53
No 46
>PLN02428 lipoic acid synthase
Probab=48.96 E-value=2.7e+02 Score=27.22 Aligned_cols=99 Identities=12% Similarity=0.092 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHHcCCccEEEEEeecCCCCH---HHHHHHHHHcCCCeEEEEeec---ccc----cccccccHHHHHH
Q 023828 141 SNLMLKQFVAMFREKTGYLIVEPAHMELAEPSI---KDAFGSCVQQGANRVIVSPFF---LFP----GRHWCQDIPSLTA 210 (276)
Q Consensus 141 a~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL---~eaLe~L~a~G~~~VvVVPLF---L~~----G~H~~~DIp~~l~ 210 (276)
....+.++.+.|++..|.. .+.++ .|++ .+.|+.|.+.|.+.+..-+=. +.+ -.+..++.-+.++
T Consensus 164 ga~~~~elir~Ir~~~P~i--~Ie~L---~pdf~~d~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~ 238 (349)
T PLN02428 164 GSGHFAETVRRLKQLKPEI--LVEAL---VPDFRGDLGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLK 238 (349)
T ss_pred cHHHHHHHHHHHHHhCCCc--EEEEe---CccccCCHHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHH
Confidence 3456888888999887753 33333 2332 689999999998775544221 111 1223345556666
Q ss_pred HHHhhCCCccE--EEeCCCCCCHHHHHHHHHHHHHH
Q 023828 211 EAAKEHPGVPY--IVTAPLGLHEQLVDVVNDRIKHC 244 (276)
Q Consensus 211 ~l~~~~p~v~I--~va~PLG~~p~L~~lL~dRl~eA 244 (276)
.+++..||+.+ .+.=.||+.++-+.-+.+.+++.
T Consensus 239 ~ak~~~pGi~tkSg~MvGLGET~Edv~e~l~~Lrel 274 (349)
T PLN02428 239 HAKESKPGLLTKTSIMLGLGETDEEVVQTMEDLRAA 274 (349)
T ss_pred HHHHhCCCCeEEEeEEEecCCCHHHHHHHHHHHHHc
Confidence 67766677654 34445688777666666666654
No 47
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=48.30 E-value=49 Score=28.37 Aligned_cols=13 Identities=15% Similarity=0.365 Sum_probs=6.2
Q ss_pred HHHHhhCCCccEE
Q 023828 210 AEAAKEHPGVPYI 222 (276)
Q Consensus 210 ~~l~~~~p~v~I~ 222 (276)
+.++++||++.+.
T Consensus 64 ~~l~~~yp~l~i~ 76 (171)
T cd06533 64 ERLRARYPGLKIV 76 (171)
T ss_pred HHHHHHCCCcEEE
Confidence 3444455555443
No 48
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=47.48 E-value=20 Score=28.53 Aligned_cols=68 Identities=12% Similarity=0.099 Sum_probs=43.7
Q ss_pred chhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccccHH
Q 023828 139 RESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIP 206 (276)
Q Consensus 139 pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DIp 206 (276)
|.+...++.|...|+.++|...+.+-|+++..|.-.+.-+++..+=.++=...|+.+..|.-+..--|
T Consensus 16 PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~EGnp 83 (93)
T PF07315_consen 16 PSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAEGNP 83 (93)
T ss_dssp --HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEESS-
T ss_pred CCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEecCCc
Confidence 67778899999999999999999999999888866554445543323455788998888876654333
No 49
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=46.96 E-value=2.4e+02 Score=26.16 Aligned_cols=91 Identities=19% Similarity=0.170 Sum_probs=58.0
Q ss_pred EEEEeCCCC-CchhHHHHHHHHHHHHHHcCCccEEEEEeecCC---CCHHHHHHHHHHcCCCeEEEEeeccccccccccc
Q 023828 129 VIIVDHGSR-RRESNLMLKQFVAMFREKTGYLIVEPAHMELAE---PSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQD 204 (276)
Q Consensus 129 LLLV~HGSr-~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~---PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~D 204 (276)
+.++.-|.. +..++....+=..++++.++ .+.+.+.|... ....++++.+.++|++=|++. |....
T Consensus 4 v~~~~~g~~~D~g~n~~~~~G~~~~~~~~~--~i~~~~~e~~~~~~~~~~~~~~~~~~~g~dlIi~~------g~~~~-- 73 (306)
T PF02608_consen 4 VALLDPGGINDKGFNQSAYEGLKRAEKELD--GIEIIYVENVPETDADYEEAIRQLADQGYDLIIGH------GFEYS-- 73 (306)
T ss_dssp EEEESSS-CCCSSHHHHHHHHHHHHHHHCT--TEEEEEEES-S-TCHHHHHHHHHHHHTT-SEEEEE------SGGGH--
T ss_pred EEEEECCCCCCccHHHHHHHHHHHHHHHcC--CceEEEEecCCccHHHHHHHHHHHHHcCCCEEEEc------cHHHH--
Confidence 455566665 66788887777788888773 37888888543 247888999998998655543 32222
Q ss_pred HHHHHHHHHhhCCCccEEEeCCCCCCH
Q 023828 205 IPSLTAEAAKEHPGVPYIVTAPLGLHE 231 (276)
Q Consensus 205 Ip~~l~~l~~~~p~v~I~va~PLG~~p 231 (276)
+.+.++.++||++.+.+.......+
T Consensus 74 --~~~~~vA~~yPd~~F~~~d~~~~~~ 98 (306)
T PF02608_consen 74 --DALQEVAKEYPDTKFIIIDGYIDAP 98 (306)
T ss_dssp --HHHHHHHTC-TTSEEEEESS---ST
T ss_pred --HHHHHHHHHCCCCEEEEEecCcCCC
Confidence 3456677889999988876655544
No 50
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=45.23 E-value=2.9e+02 Score=26.59 Aligned_cols=140 Identities=8% Similarity=0.022 Sum_probs=82.7
Q ss_pred CCCCcEEEEEeCCCCCchhHHHHHHHH-HHHHHHc-CCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeeccccc-c
Q 023828 123 VGDKDGVIIVDHGSRRRESNLMLKQFV-AMFREKT-GYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPG-R 199 (276)
Q Consensus 123 ~~~~~aLLLV~HGSr~pea~~~l~~lA-~~L~~r~-~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G-~ 199 (276)
++-+.++|+-..+-..+.....+...+ +.|.+.. +...|.+++ .-++...++.+-....+++.|||+.=.-| .
T Consensus 78 fgL~~a~VVp~~~~~~~~~~~~lg~aaA~~l~~~l~~gdvigV~w----GrTv~a~~~~l~~~~~~~~~vV~l~GG~~~~ 153 (321)
T COG2390 78 FGLKEAIVVPSDSDADDSILRRLGRAAAQYLESLLKPGDVIGVGW----GRTLSAVVDNLPPAPLRDVKVVQLTGGVGHA 153 (321)
T ss_pred cCCCeEEEEcCCCCCchHHHHHHHHHHHHHHHHhCCCCCEEEEec----cHHHHHHHHhcCcCccCCeEEEECCCCCCCC
Confidence 455667777665444444444344444 4455544 333444442 34688888888666688899999976666 2
Q ss_pred cccccHHHHHHHHHhhCCC-ccEEEeCCCCCCHHHHHHHHH-H-HHHHHhhcCCCCCceeEEEecCCCCCcCC
Q 023828 200 HWCQDIPSLTAEAAKEHPG-VPYIVTAPLGLHEQLVDVVND-R-IKHCLSHAVGDADECVVCAGTDRCRLYGA 269 (276)
Q Consensus 200 H~~~DIp~~l~~l~~~~p~-v~I~va~PLG~~p~L~~lL~d-R-l~eAl~~~~~~~~~~~vlvG~Gs~~~~~~ 269 (276)
+.....-.....+.+++.+ ..+-.+|-+-.++++.++|.+ + +++.+.... . --+.++|-|+..+..-
T Consensus 154 ~~~~~~~~~~~~~A~k~~~~~~~l~aP~~~~s~e~r~~l~~e~~v~~vl~~~~-~--ad~alvGIG~~~~~~~ 223 (321)
T COG2390 154 DGSYNANTIALRLAEKLGAESYLLPAPLVASSPELREALLQEPSVREVLDLAR-S--ADLALVGIGSLSANST 223 (321)
T ss_pred ccccCHHHHHHHHHHHhCCcEEeeecCccCCCHHHHHHHHhCcHHHHHHHHHH-h--CCEEEEecCCCcccch
Confidence 3332233333444444432 234567778889999999983 3 555554321 1 1278899998876543
No 51
>PF01422 zf-NF-X1: NF-X1 type zinc finger; InterPro: IPR000967 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a domain presumed to be a zinc binding domain. The following pattern describes the zinc finger: C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C where X can be any amino acid, and numbers in brackets indicate the number of residues. The two position can be either His or Cys. This domain is found in the human transcriptional repressor NK-X1, a repressor of HLA-DRA transcription; the Drosophila shuttle craft protein, which plays an essential role during the late stages of embryonic neurogenesis; and a yeast hypothetical protein YNL023C. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=43.61 E-value=11 Score=21.85 Aligned_cols=9 Identities=67% Similarity=1.372 Sum_probs=7.2
Q ss_pred ccccCCCCc
Q 023828 22 QFPCHPGPV 30 (276)
Q Consensus 22 ~~~~~~~~~ 30 (276)
+.+||+||-
T Consensus 7 ~~~CH~G~C 15 (20)
T PF01422_consen 7 QQLCHPGPC 15 (20)
T ss_pred CCcccCCcC
Confidence 568999985
No 52
>cd01837 SGNH_plant_lipase_like SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=43.32 E-value=28 Score=32.30 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCCeEEEE--------eeccccc---------------ccccccHHHHHHHHHhhCCCccEEEeCCC
Q 023828 173 IKDAFGSCVQQGANRVIVS--------PFFLFPG---------------RHWCQDIPSLTAEAAKEHPGVPYIVTAPL 227 (276)
Q Consensus 173 L~eaLe~L~a~G~~~VvVV--------PLFL~~G---------------~H~~~DIp~~l~~l~~~~p~v~I~va~PL 227 (276)
+.+.|++|.+.|+++|+|. |.+.... ......+.+.++++++++++++|.+..-.
T Consensus 166 i~~~v~~L~~~GAr~~~v~~lpplgc~P~~~~~~~~~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~~~~i~~~D~y 243 (315)
T cd01837 166 ISSAIKRLYDLGARKFVVPGLGPLGCLPSQRTLFGGDGGGCLEELNELARLFNAKLKKLLAELRRELPGAKFVYADIY 243 (315)
T ss_pred HHHHHHHHHhCCCcEEEecCCCCcCccHHHHhhcCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEehh
Confidence 4567888889999999885 3333211 01112233445566667788887766543
No 53
>PLN02618 tryptophan synthase, beta chain
Probab=42.84 E-value=1.5e+02 Score=29.54 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=42.0
Q ss_pred HHHHHHcCCCeEEEEeeccccccccccc-HHHHHHHHHhhCCCccEEEeCCCCCCHH--H----HHHHHHHHHHH-Hhhc
Q 023828 177 FGSCVQQGANRVIVSPFFLFPGRHWCQD-IPSLTAEAAKEHPGVPYIVTAPLGLHEQ--L----VDVVNDRIKHC-LSHA 248 (276)
Q Consensus 177 Le~L~a~G~~~VvVVPLFL~~G~H~~~D-Ip~~l~~l~~~~p~v~I~va~PLG~~p~--L----~~lL~dRl~eA-l~~~ 248 (276)
+..+...|+ +|+.+| .|.....| +.+.+++|.++..+.-+.+....|+||. + ...+..-+++. +.+.
T Consensus 162 v~~mr~lGA-~Vi~v~----~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~~~~v~~~q~tig~Ei~~Q~~~~~ 236 (410)
T PLN02618 162 VFRMRLLGA-EVRPVH----SGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKW 236 (410)
T ss_pred HHHHHHCCC-EEEEEe----CCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCCHHHHHHhhHHHHHHHHHHHHHHh
Confidence 346666787 466666 23222223 3344555655433333344444555542 2 22222233322 2334
Q ss_pred CCCCCceeEEEecCCC
Q 023828 249 VGDADECVVCAGTDRC 264 (276)
Q Consensus 249 ~~~~~~~~vlvG~Gs~ 264 (276)
+...|..++|||-|+.
T Consensus 237 g~~pD~VV~~VGgGg~ 252 (410)
T PLN02618 237 GGKPDVLVACVGGGSN 252 (410)
T ss_pred CCCCCEEEEEeCchHH
Confidence 4456889999999874
No 54
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=42.49 E-value=2e+02 Score=23.90 Aligned_cols=108 Identities=14% Similarity=0.125 Sum_probs=59.4
Q ss_pred EEEEeCCCC-CchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHH-cCCCeEEEEeecccccccccccHH
Q 023828 129 VIIVDHGSR-RRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQ-QGANRVIVSPFFLFPGRHWCQDIP 206 (276)
Q Consensus 129 LLLV~HGSr-~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a-~G~~~VvVVPLFL~~G~H~~~DIp 206 (276)
++++-|... -.+...++-..+.+|++..+. .|....+- ..+...+.+.++.+ .|+++|+.+.--........ ...
T Consensus 3 lv~~e~~~~~l~~~~~e~l~~A~~La~~~g~-~v~av~~G-~~~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~-~~a 79 (164)
T PF01012_consen 3 LVFAEHRDGRLNPVSLEALEAARRLAEALGG-EVTAVVLG-PAEEAAEALRKALAKYGADKVYHIDDPALAEYDPE-AYA 79 (164)
T ss_dssp EEEE-EETCEE-HHHHHHHHHHHHHHHCTTS-EEEEEEEE-TCCCHHHHHHHHHHSTTESEEEEEE-GGGTTC-HH-HHH
T ss_pred EEEEECCCCccCHHHHHHHHHHHHHHhhcCC-eEEEEEEe-cchhhHHHHhhhhhhcCCcEEEEecCccccccCHH-HHH
Confidence 344444322 234456677888899987753 56555553 33789999888877 89999999976544433321 234
Q ss_pred HHHHHHH-hhCCCccEEEeCCCCCCHHHHHHHHHHH
Q 023828 207 SLTAEAA-KEHPGVPYIVTAPLGLHEQLVDVVNDRI 241 (276)
Q Consensus 207 ~~l~~l~-~~~p~v~I~va~PLG~~p~L~~lL~dRl 241 (276)
+.+.++- +..| ++.+...=-....+.-.+..|+
T Consensus 80 ~~l~~~~~~~~~--~lVl~~~t~~g~~la~~lA~~L 113 (164)
T PF01012_consen 80 DALAELIKEEGP--DLVLFGSTSFGRDLAPRLAARL 113 (164)
T ss_dssp HHHHHHHHHHT---SEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--CEEEEcCcCCCCcHHHHHHHHh
Confidence 4444443 3334 4555544333333444444444
No 55
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=41.57 E-value=2.1e+02 Score=23.83 Aligned_cols=107 Identities=13% Similarity=0.155 Sum_probs=59.1
Q ss_pred CcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccccH
Q 023828 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDI 205 (276)
Q Consensus 126 ~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DI 205 (276)
+.-+|+...|.-.-+ ..+.-++..|+ ..++..+ |+- ..-+.++.++...+.++ +++.+..+.. .+ ..++
T Consensus 3 ~~~vl~~~~~gD~H~--lG~~iv~~~lr-~~G~eVi---~LG-~~vp~e~i~~~a~~~~~-d~V~lS~~~~--~~-~~~~ 71 (137)
T PRK02261 3 KKTVVLGVIGADCHA--VGNKILDRALT-EAGFEVI---NLG-VMTSQEEFIDAAIETDA-DAILVSSLYG--HG-EIDC 71 (137)
T ss_pred CCEEEEEeCCCChhH--HHHHHHHHHHH-HCCCEEE---ECC-CCCCHHHHHHHHHHcCC-CEEEEcCccc--cC-HHHH
Confidence 345666666653211 12334444455 4554333 343 23448888888877655 4555555554 33 3467
Q ss_pred HHHHHHHHhh-CCCccEEEeCCCCCCHHHHHHHHHHHHH
Q 023828 206 PSLTAEAAKE-HPGVPYIVTAPLGLHEQLVDVVNDRIKH 243 (276)
Q Consensus 206 p~~l~~l~~~-~p~v~I~va~PLG~~p~L~~lL~dRl~e 243 (276)
++.++.+++. .+++.+.++-.+...+.......+++++
T Consensus 72 ~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~ 110 (137)
T PRK02261 72 RGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKE 110 (137)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHH
Confidence 7777888766 4477777877765444444444455554
No 56
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=40.94 E-value=4e+02 Score=26.99 Aligned_cols=103 Identities=18% Similarity=0.185 Sum_probs=66.4
Q ss_pred CcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCC-ccEEEEEeecCCCC-H-HHHHHHHHHcCCCeEEEEeecccc-----
Q 023828 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGY-LIVEPAHMELAEPS-I-KDAFGSCVQQGANRVIVSPFFLFP----- 197 (276)
Q Consensus 126 ~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~-~~V~~AfLE~a~Ps-L-~eaLe~L~a~G~~~VvVVPLFL~~----- 197 (276)
...-|.++-|++.--....+.++.+.+.+..+. ..+..-.+|.+.|. + .+.++.|.+.|+.+|-|-|==+.+
T Consensus 218 ~v~tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~ 297 (488)
T PRK08207 218 KITTIYFGGGTPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKA 297 (488)
T ss_pred ceeEEEEeCCCccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHH
Confidence 445688888997655567788999988877632 22333335644564 3 788999999999998887654421
Q ss_pred -c-ccccccHHHHHHHHHhhCC-Cc--cEEEeCCCC
Q 023828 198 -G-RHWCQDIPSLTAEAAKEHP-GV--PYIVTAPLG 228 (276)
Q Consensus 198 -G-~H~~~DIp~~l~~l~~~~p-~v--~I~va~PLG 228 (276)
| .|...++-+.++.+++... .+ .+.++-|--
T Consensus 298 igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgE 333 (488)
T PRK08207 298 IGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGE 333 (488)
T ss_pred hCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCC
Confidence 3 3666677777777765432 23 444555533
No 57
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=40.85 E-value=2.4e+02 Score=25.02 Aligned_cols=88 Identities=20% Similarity=0.241 Sum_probs=53.5
Q ss_pred cEEEEEeCCC---------CCchhH-HHHHHHHHHHHHHcCCccEEEEEeecCC-----CCHHHHHHHHHHcCCCeEEEE
Q 023828 127 DGVIIVDHGS---------RRRESN-LMLKQFVAMFREKTGYLIVEPAHMELAE-----PSIKDAFGSCVQQGANRVIVS 191 (276)
Q Consensus 127 ~aLLLV~HGS---------r~pea~-~~l~~lA~~L~~r~~~~~V~~AfLE~a~-----PsL~eaLe~L~a~G~~~VvVV 191 (276)
..+-+...+| +..+.. ..+....+.+++. + ..|.+.+..... ..+.+.++++.+.|++.|.+.
T Consensus 89 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~-G-~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~ 166 (265)
T cd03174 89 DEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEA-G-LEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK 166 (265)
T ss_pred CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC-C-CeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 5566777777 222221 2344444444543 3 345555433222 125677788888899999877
Q ss_pred eecccccccccccHHHHHHHHHhhCCCc
Q 023828 192 PFFLFPGRHWCQDIPSLTAEAAKEHPGV 219 (276)
Q Consensus 192 PLFL~~G~H~~~DIp~~l~~l~~~~p~v 219 (276)
.. .|.-+-.++.+.++.+++..+++
T Consensus 167 Dt---~G~~~P~~v~~li~~l~~~~~~~ 191 (265)
T cd03174 167 DT---VGLATPEEVAELVKALREALPDV 191 (265)
T ss_pred hh---cCCcCHHHHHHHHHHHHHhCCCC
Confidence 66 56666678888888888877643
No 58
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=40.81 E-value=78 Score=29.59 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=30.2
Q ss_pred HHHHHHHhhCCCccEEEeC-CCCCCHHHHHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCc
Q 023828 207 SLTAEAAKEHPGVPYIVTA-PLGLHEQLVDVVNDRIKHCLSHAVGDADECVVCAGTDRCRLY 267 (276)
Q Consensus 207 ~~l~~l~~~~p~v~I~va~-PLG~~p~L~~lL~dRl~eAl~~~~~~~~~~~vlvG~Gs~~~~ 267 (276)
+....+++++|++.|.-.. ++-...+- +.|.++|.+. ...+++||-|.++.+
T Consensus 123 ~a~~~l~~~~p~l~ivg~h~GYf~~~e~-~~i~~~I~~s--------~pdil~VgmG~P~QE 175 (253)
T COG1922 123 QAAAKLRAKYPGLKIVGSHDGYFDPEEE-EAIVERIAAS--------GPDILLVGMGVPRQE 175 (253)
T ss_pred HHHHHHHHHCCCceEEEecCCCCChhhH-HHHHHHHHhc--------CCCEEEEeCCCchhH
Confidence 3455677788877766555 22222222 5666666442 234788888877653
No 59
>KOG3672 consensus Histidine acid phosphatase [General function prediction only]
Probab=38.52 E-value=19 Score=35.83 Aligned_cols=92 Identities=18% Similarity=0.185 Sum_probs=63.3
Q ss_pred ccccchhhhhhhhhhhccccCCCCCCCchhhhhcCChhhhcCCcceeeeccccCccCCCCCcccCCCCCccccCCCcccc
Q 023828 33 IVSLSSSIALILCKITSSLHKPSETPNSWKADQNMSVESLALSPQFTVKRCSIGEVGTKNPIWVHPNSLNFQRGPSRTKH 112 (276)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (276)
.|-|+.-|+|...-|+--.-.|.++|+++ ++ +-+.++.. +++-+.|+=+..++....-|..|...
T Consensus 16 ~v~L~~wi~lvv~~~~~y~~~~~sTp~~G-----~~------Sss~~~~~----p~~~~ep~~t~~~f~~~~~~~~p~~q 80 (487)
T KOG3672|consen 16 RVRLIDWILLVVIFITIYTILHNSTPNEG-----IE------SSSVQLEK----PIWKKEPIRTMCQFLEHEVTGEPGDQ 80 (487)
T ss_pred HHHHHHHHHHHHHHHhheeeccccCCCCC-----Cc------CCCceeec----CCCCCCCchhHHHHHHHHHhCChHHH
Confidence 46677888888888888878899999998 22 22233333 67777777677778888888888776
Q ss_pred cccccc-CCCCCCCCcEEEEEeCCCCCc
Q 023828 113 LSIKSS-SRDGVGDKDGVIIVDHGSRRR 139 (276)
Q Consensus 113 l~~~~~-~~~~~~~~~aLLLV~HGSr~p 139 (276)
+...++ -..+|.-..-.+++=||-|.|
T Consensus 81 ~~~~~dh~~~~~KL~gV~vviRHGdR~P 108 (487)
T KOG3672|consen 81 WVKGNDHYEKKLKLRGVTVVIRHGDRSP 108 (487)
T ss_pred HhhcccccccceEEEEEEEEEEcCCcCC
Confidence 554422 333455556678888998865
No 60
>PRK13463 phosphatase PhoE; Provisional
Probab=38.46 E-value=2.4e+02 Score=24.41 Aligned_cols=39 Identities=10% Similarity=0.178 Sum_probs=23.6
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHhhcCC-CCCceeEEEecCCC
Q 023828 223 VTAPLGLHEQLVDVVNDRIKHCLSHAVG-DADECVVCAGTDRC 264 (276)
Q Consensus 223 va~PLG~~p~L~~lL~dRl~eAl~~~~~-~~~~~~vlvG~Gs~ 264 (276)
+..|-|++. +-+.+|+..++..+.. ..++.+++|+||..
T Consensus 115 ~~~~~gEs~---~~~~~R~~~~l~~i~~~~~~~~vlvVsHg~~ 154 (203)
T PRK13463 115 FQSTSGENF---EAVHKRVIEGMQLLLEKHKGESILIVSHAAA 154 (203)
T ss_pred cCCCCCeEH---HHHHHHHHHHHHHHHHhCCCCEEEEEeChHH
Confidence 445556543 2456777777665422 23456899999964
No 61
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=37.97 E-value=77 Score=29.96 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCceeEEEecCCC
Q 023828 232 QLVDVVNDRIKHCLSHAVGDADECVVCAGTDRC 264 (276)
Q Consensus 232 ~L~~lL~dRl~eAl~~~~~~~~~~~vlvG~Gs~ 264 (276)
...+-+..|+..++.........-+|++|||++
T Consensus 171 ~~~~~~~ari~Aa~~~~~~~~~~~ivlIg~G~g 203 (310)
T PF12048_consen 171 AYEERLFARIEAAIAFAQQQGGKNIVLIGHGTG 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEEEEeChh
Confidence 566777888888777553323344899999985
No 62
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=36.01 E-value=39 Score=25.61 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHcCCCeEEEEee
Q 023828 170 EPSIKDAFGSCVQQGANRVIVSPF 193 (276)
Q Consensus 170 ~PsL~eaLe~L~a~G~~~VvVVPL 193 (276)
+-.+.+.+++|++.|++.|+|+|+
T Consensus 49 ~~~~~~~~~~Lk~~GA~~Ilv~pi 72 (75)
T PF08029_consen 49 EKQVWDLMDKLKAAGASDILVLPI 72 (75)
T ss_dssp CCCHHHHHHHHHCTT-EEEEEEE-
T ss_pred HHHHHHHHHHHHHcCCCEEEEEec
Confidence 557999999999999999999996
No 63
>PRK05660 HemN family oxidoreductase; Provisional
Probab=33.89 E-value=4.4e+02 Score=25.41 Aligned_cols=88 Identities=18% Similarity=0.194 Sum_probs=56.5
Q ss_pred CcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCc-cEEEEEeecCCCC-H-HHHHHHHHHcCCCeEEEEeecc-------
Q 023828 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYL-IVEPAHMELAEPS-I-KDAFGSCVQQGANRVIVSPFFL------- 195 (276)
Q Consensus 126 ~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~-~V~~AfLE~a~Ps-L-~eaLe~L~a~G~~~VvVVPLFL------- 195 (276)
..--|.++-|++.--....+.++.+.+++..+.. ..++. +| +.|. + .+.++.+++.|+.+|.|-.==+
T Consensus 58 ~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit-~e-~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~ 135 (378)
T PRK05660 58 EVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEIT-ME-ANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKR 135 (378)
T ss_pred ceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEE-EE-eCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHH
Confidence 3457888888876555678899999999876532 12332 55 3444 2 6778888888888887754333
Q ss_pred cccccccccHHHHHHHHHhh
Q 023828 196 FPGRHWCQDIPSLTAEAAKE 215 (276)
Q Consensus 196 ~~G~H~~~DIp~~l~~l~~~ 215 (276)
....|...++-+.++.+++.
T Consensus 136 l~r~~~~~~~~~ai~~~~~~ 155 (378)
T PRK05660 136 LGRIHGPDEAKRAAKLAQGL 155 (378)
T ss_pred hCCCCCHHHHHHHHHHHHHc
Confidence 22345555566666666543
No 64
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=32.89 E-value=4.7e+02 Score=25.58 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=37.4
Q ss_pred CcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEee
Q 023828 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (276)
Q Consensus 126 ~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPL 193 (276)
+.-++||+-||..... ++.++.|+++. ..|.+--+..-.|.-.+.+.++.+ ++++|+|+=.
T Consensus 274 dAd~~IV~~GSt~~~~----keAv~~lr~~G--~kvg~l~~~~~~PfP~~~i~~~l~-~~k~viVvE~ 334 (375)
T PRK09627 274 DAEILIIAYGSVSLSA----KEAIKRLREEG--IKVGLFRPITLWPSPAKKLKEIGD-KFEKILVIEL 334 (375)
T ss_pred CCCEEEEEeCCCHHHH----HHHHHHHHhcC--CeEEEEEeCeEECCCHHHHHHHHh-cCCEEEEEcC
Confidence 4569999999976444 44455565532 223332222346877777777754 6888888744
No 65
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=32.52 E-value=2.2e+02 Score=27.05 Aligned_cols=10 Identities=10% Similarity=0.205 Sum_probs=7.4
Q ss_pred ceeEEEecCC
Q 023828 254 ECVVCAGTDR 263 (276)
Q Consensus 254 ~~~vlvG~Gs 263 (276)
.+.+.+|+|-
T Consensus 210 ~TgiIVGlGE 219 (302)
T TIGR00510 210 KSGIMVGLGE 219 (302)
T ss_pred cceEEEECCC
Confidence 4688899964
No 66
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=31.75 E-value=1.1e+02 Score=24.55 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=16.2
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHHHHHc
Q 023828 128 GVIIVDHGSRRRESNLMLKQFVAMFREKT 156 (276)
Q Consensus 128 aLLLV~HGSr~pea~~~l~~lA~~L~~r~ 156 (276)
.+||++|| + ....+...++++....
T Consensus 2 ~ili~sHG-~---~A~gi~~~~~~i~G~~ 26 (122)
T cd00006 2 GIIIATHG-G---FASGLLNSAEMILGEQ 26 (122)
T ss_pred eEEEEcCH-H---HHHHHHHHHHHhcCCC
Confidence 58999999 3 3344666666665433
No 67
>cd01846 fatty_acyltransferase_like Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.
Probab=30.61 E-value=1.1e+02 Score=27.35 Aligned_cols=53 Identities=25% Similarity=0.381 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCCeEEEE--------eeccccccc-----------ccccHHHHHHHHHhhCCCccEEEeC
Q 023828 173 IKDAFGSCVQQGANRVIVS--------PFFLFPGRH-----------WCQDIPSLTAEAAKEHPGVPYIVTA 225 (276)
Q Consensus 173 L~eaLe~L~a~G~~~VvVV--------PLFL~~G~H-----------~~~DIp~~l~~l~~~~p~v~I~va~ 225 (276)
+.+.+++|.+.|.++|+|+ |.+...... ...-+.+.++++++.+++..+.+..
T Consensus 133 ~~~~i~~l~~~g~~~i~v~~~p~~~~~P~~~~~~~~~~~~~~~~~~~~N~~L~~~l~~l~~~~~~~~i~~~D 204 (270)
T cd01846 133 LFQALQRLYAAGARNFLVLNLPDLGLTPAFQAQGDAVAARATALTAAYNAKLAEKLAELKAQHPGVNILLFD 204 (270)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCCCCcccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 5677788888899998876 444332221 1112333445566677877777644
No 68
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=30.34 E-value=5.2e+02 Score=25.10 Aligned_cols=100 Identities=18% Similarity=0.158 Sum_probs=64.4
Q ss_pred CcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCcc-EEEEEeecCCCC-H-HHHHHHHHHcCCCeEEEEee-----cc-c
Q 023828 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLI-VEPAHMELAEPS-I-KDAFGSCVQQGANRVIVSPF-----FL-F 196 (276)
Q Consensus 126 ~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~-V~~AfLE~a~Ps-L-~eaLe~L~a~G~~~VvVVPL-----FL-~ 196 (276)
...-|.++-|++.-=..+.+.++.+.+++..+... .++. +|. .|. + .+-++.+.+.|+++|.|=-= .| .
T Consensus 73 ~i~siy~GGGTPs~L~~~~L~~ll~~i~~~~~~~~~~eit-~E~-~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~ 150 (394)
T PRK08898 73 QVHTVFIGGGTPSLLSAAGLDRLLSDVRALLPLDPDAEIT-LEA-NPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKA 150 (394)
T ss_pred ceeEEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEE-EEE-CCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHH
Confidence 45578999999876666789999999999886532 2333 553 443 3 67899999999999887532 22 2
Q ss_pred cc-ccccccHHHHHHHHHhhCCCccEEEeCCC
Q 023828 197 PG-RHWCQDIPSLTAEAAKEHPGVPYIVTAPL 227 (276)
Q Consensus 197 ~G-~H~~~DIp~~l~~l~~~~p~v~I~va~PL 227 (276)
-| .|...++.+.++.+++.+..+.+.+.-.|
T Consensus 151 l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~Gl 182 (394)
T PRK08898 151 LGRIHDGAEARAAIEIAAKHFDNFNLDLMYAL 182 (394)
T ss_pred hCCCCCHHHHHHHHHHHHHhCCceEEEEEcCC
Confidence 22 24445566666666655554544444444
No 69
>PRK05481 lipoyl synthase; Provisional
Probab=30.29 E-value=4.6e+02 Score=24.47 Aligned_cols=91 Identities=14% Similarity=0.168 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHcCCccEE----EEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccc-cccccHHHHH--------
Q 023828 143 LMLKQFVAMFREKTGYLIVE----PAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGR-HWCQDIPSLT-------- 209 (276)
Q Consensus 143 ~~l~~lA~~L~~r~~~~~V~----~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~-H~~~DIp~~l-------- 209 (276)
+...++.+.+++..|+..+. +||-| ..-.+.+.++.+.+.+.+.+.|.||+. ++. +. +||+.+
T Consensus 180 e~~le~i~~ar~~~pgi~~~t~~IvGfGE-T~ed~~~tl~~lrel~~d~v~if~Ys~-pa~k~~--~v~~~~k~~r~~~l 255 (289)
T PRK05481 180 ERSLELLKRAKELHPGIPTKSGLMVGLGE-TDEEVLEVMDDLRAAGVDILTIGQYLQ-PSRKHL--PVERYVTPEEFDEY 255 (289)
T ss_pred HHHHHHHHHHHHhCCCCeEeeeeEEECCC-CHHHHHHHHHHHHhcCCCEEEEEccCC-CccccC--CCCCcCCHHHHHHH
Confidence 44566667777776655444 35433 233467777788889999999999999 555 54 455332
Q ss_pred HHHHhhCCCccEEEeCCCCCCHHHHHHHH
Q 023828 210 AEAAKEHPGVPYIVTAPLGLHEQLVDVVN 238 (276)
Q Consensus 210 ~~l~~~~p~v~I~va~PLG~~p~L~~lL~ 238 (276)
..++.. -|+...++-|+-.+.-.++...
T Consensus 256 ~~~~~~-i~~~~~~~~~~~~~~~~~~~~~ 283 (289)
T PRK05481 256 KEIALE-LGFLHVASGPLVRSSYHADEQA 283 (289)
T ss_pred HHHHHH-cCchheEecCccccchhhHHHH
Confidence 222322 3566678888877766665543
No 70
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=30.16 E-value=2.1e+02 Score=27.19 Aligned_cols=58 Identities=29% Similarity=0.449 Sum_probs=35.3
Q ss_pred CCCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEee
Q 023828 124 GDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (276)
Q Consensus 124 ~~~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPL 193 (276)
..+.++|-|+-|. .+++.++ ..+...|-.+ -.-..||.++.++.+.+.++++|+|+|=
T Consensus 94 ~~~~~vVAv~~g~----------g~~~lf~-~~Gv~~vi~g-gqt~nPS~~dl~~Ai~~~~a~~VivLPN 151 (313)
T PF13684_consen 94 EKDRGVVAVAPGE----------GLAELFR-SLGVDVVISG-GQTMNPSTEDLLNAIEKVGADEVIVLPN 151 (313)
T ss_pred cCCeEEEEEecCc----------cHHHHHH-hCCCeEEEeC-CCCCCCCHHHHHHHHHhCCCCeEEEEeC
Confidence 3456888887654 2344553 3342222221 1113688888888888888889998884
No 71
>smart00438 ZnF_NFX Repressor of transcription.
Probab=30.09 E-value=25 Score=21.72 Aligned_cols=10 Identities=60% Similarity=1.182 Sum_probs=7.4
Q ss_pred ccccCCCCcc
Q 023828 22 QFPCHPGPVN 31 (276)
Q Consensus 22 ~~~~~~~~~~ 31 (276)
+-+||+||--
T Consensus 7 ~~~CH~G~C~ 16 (26)
T smart00438 7 QKLCHPGPCP 16 (26)
T ss_pred CCCCCCCcCc
Confidence 4579999854
No 72
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=29.29 E-value=3.7e+02 Score=23.05 Aligned_cols=74 Identities=18% Similarity=0.127 Sum_probs=45.5
Q ss_pred cccccccccHHHHHHH---HHhhCCCccEEE---eCCCCCCHHHHHHHHHH---HHHHHhhcCCCCCceeEEEecCCCCC
Q 023828 196 FPGRHWCQDIPSLTAE---AAKEHPGVPYIV---TAPLGLHEQLVDVVNDR---IKHCLSHAVGDADECVVCAGTDRCRL 266 (276)
Q Consensus 196 ~~G~H~~~DIp~~l~~---l~~~~p~v~I~v---a~PLG~~p~L~~lL~dR---l~eAl~~~~~~~~~~~vlvG~Gs~~~ 266 (276)
+...-.+.+....++. +-+++|...|.+ +...|.+..=..+=.+| ++++|...+-.++ .+-.+|.|..+|
T Consensus 89 ~ds~~l~p~~~~~L~~~a~~L~~~p~~~i~V~GHTD~~Gs~~yN~~LS~rRA~aV~~~L~~~Gv~~~-~i~~~G~G~~~P 167 (190)
T COG2885 89 FDSSVLKPKAQATLDELAKYLKKNPITRILVEGHTDSTGSDEYNQALSERRAEAVADYLVSQGVVAD-RISTVGYGEEKP 167 (190)
T ss_pred CCccccCHhHHHHHHHHHHHHHhCCCcEEEEEecCCCCCCHHHhHHHHHHHHHHHHHHHHHcCCCcc-cEEEEEcCcCCC
Confidence 3333333333334433 334677666654 67788877666666666 4455555553444 899999999999
Q ss_pred cCCC
Q 023828 267 YGAG 270 (276)
Q Consensus 267 ~~~~ 270 (276)
.+..
T Consensus 168 ia~n 171 (190)
T COG2885 168 IASN 171 (190)
T ss_pred CCCC
Confidence 8753
No 73
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]
Probab=29.28 E-value=5e+02 Score=24.59 Aligned_cols=30 Identities=17% Similarity=0.177 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCc-----hhHHHHHHHHHHHHHHcC
Q 023828 128 GVIIVDHGSRRR-----ESNLMLKQFVAMFREKTG 157 (276)
Q Consensus 128 aLLLV~HGSr~p-----ea~~~l~~lA~~L~~r~~ 157 (276)
-.|+++|||+.- .+...++++.+.+.+..|
T Consensus 10 p~LflshgsP~~~~~~n~~~~~l~~lG~~~~e~rp 44 (268)
T COG3384 10 PALFLSHGSPMLALEDNAATRGLRELGRELPELRP 44 (268)
T ss_pred cceeecCCCcccccCccHHHHHHHHHHHhhhhcCC
Confidence 468999999842 344568888888887333
No 74
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=29.25 E-value=1.2e+02 Score=26.77 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEeecccccccccccHHHHHHHHHhhCCCccEEE
Q 023828 172 SIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAEAAKEHPGVPYIV 223 (276)
Q Consensus 172 sL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DIp~~l~~l~~~~p~v~I~v 223 (276)
++..+++.|++.|+++|.++=++. -++.++.+.+.||++++..
T Consensus 137 Tl~~ai~~L~~~G~~~I~v~~ll~---------~~~gl~~l~~~~p~v~i~~ 179 (207)
T TIGR01091 137 TMIAALDLLKKRGAKKIKVLSIVA---------APEGIEAVEKAHPDVDIYT 179 (207)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEec---------CHHHHHHHHHHCCCCEEEE
Confidence 355666667667777666665522 1233445555667666543
No 75
>PRK08445 hypothetical protein; Provisional
Probab=29.07 E-value=4.5e+02 Score=25.28 Aligned_cols=119 Identities=9% Similarity=0.046 Sum_probs=61.1
Q ss_pred cEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEee--------cCCCCHHHHHHHHHHcCCCeEE-E-------
Q 023828 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHME--------LAEPSIKDAFGSCVQQGANRVI-V------- 190 (276)
Q Consensus 127 ~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE--------~a~PsL~eaLe~L~a~G~~~Vv-V------- 190 (276)
..+++++ |-...-..+.+.++.+.++++.|...+ .||.. ...-+.++.+++|++.|.+++. +
T Consensus 91 ~~i~~~g-g~~~~~~~e~~~~l~~~Ik~~~p~i~~-~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~~g~glE~~~d 168 (348)
T PRK08445 91 TQILFQG-GVHPKLKIEWYENLVSHIAQKYPTITI-HGFSAVEIDYIAKISKISIKEVLERLQAKGLSSIPGAGAEILSD 168 (348)
T ss_pred CEEEEec-CCCCCCCHHHHHHHHHHHHHHCCCcEE-EEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCCCCCceeeCCH
Confidence 3666665 322222345688899999999886432 23221 1233568999999999998763 3
Q ss_pred -EeecccccccccccHHHHHHHHHhhCCCccEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 023828 191 -SPFFLFPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVDVVNDRIKHCLSH 247 (276)
Q Consensus 191 -VPLFL~~G~H~~~DIp~~l~~l~~~~p~v~I~va~PLG~~p~L~~lL~dRl~eAl~~ 247 (276)
+.=.+++......+--+.++.+++..-.+.-.+.=.+|+.++-.--...++++...+
T Consensus 169 ~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G~~Et~edr~~~l~~lreLq~~ 226 (348)
T PRK08445 169 RVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMFGTVENDEEIIEHWERIRDLQDE 226 (348)
T ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 112222433333232344555554322122223334566544333334445555443
No 76
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=28.93 E-value=5.3e+02 Score=24.80 Aligned_cols=96 Identities=20% Similarity=0.274 Sum_probs=63.6
Q ss_pred CCCcEEEEEeCCCC-CchhHHHHHHHHHHHHHHcCCccEEEEEeecCC----CCHHHHHHHHHHcCCCeEEEEeeccccc
Q 023828 124 GDKDGVIIVDHGSR-RRESNLMLKQFVAMFREKTGYLIVEPAHMELAE----PSIKDAFGSCVQQGANRVIVSPFFLFPG 198 (276)
Q Consensus 124 ~~~~aLLLV~HGSr-~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~----PsL~eaLe~L~a~G~~~VvVVPLFL~~G 198 (276)
.+...+.++.+|.. +..++.....=...+++.++ ..+...|.|..+ ..++++++++.+.|. ++++. .|
T Consensus 33 ~~~~~~~~~~~g~~~D~s~n~~~~~g~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~-~lI~~-----~g 105 (345)
T COG1744 33 GKKKKVAVIDVGGIDDKSFNQSAYEGLLKAKKELG-LKVETYYWEYVQSDSEADYERALRALAEDGY-DLIFG-----TG 105 (345)
T ss_pred ccceEEEEEecCCCCccchhHHHHHHHHHHHHHhC-CceEeeeeeecCCcchhHHHHHHHHHHhcCC-CEEEE-----ec
Confidence 45667888888987 45678776666678888776 356776666333 347888889988888 33332 23
Q ss_pred ccccccHHHHHHHHHhhCCCccEEEeCCCCCC
Q 023828 199 RHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLH 230 (276)
Q Consensus 199 ~H~~~DIp~~l~~l~~~~p~v~I~va~PLG~~ 230 (276)
.-.. +.+.++..++|++.+.+.......
T Consensus 106 f~~~----d~~~~va~~~Pd~~F~iid~~~~~ 133 (345)
T COG1744 106 FAFS----DALEKVAAEYPDVKFVIIDGVVKK 133 (345)
T ss_pred cchh----hHHHHHHHHCCCCEEEEecCccCC
Confidence 2222 345566667899988877775543
No 77
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=28.83 E-value=2.4e+02 Score=25.92 Aligned_cols=53 Identities=9% Similarity=-0.022 Sum_probs=25.0
Q ss_pred EEEEeecCCCCH-HHHHHHHHHcCCCeEEEEeecccccccccccHHHHHHHHHhhCCCc
Q 023828 162 EPAHMELAEPSI-KDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAEAAKEHPGV 219 (276)
Q Consensus 162 ~~AfLE~a~PsL-~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DIp~~l~~l~~~~p~v 219 (276)
.+.|+- +.|.+ +++.+.+.++ + .+.|+=+ .+|.....+..+.++.+.+..|++
T Consensus 107 ~v~llG-~~~~v~~~a~~~l~~~-y-~l~i~g~--~~Gyf~~~e~~~i~~~I~~s~~di 160 (243)
T PRK03692 107 PVFLVG-GKPEVLAQTEAKLRTQ-W-NVNIVGS--QDGYFTPEQRQALFERIHASGAKI 160 (243)
T ss_pred eEEEEC-CCHHHHHHHHHHHHHH-h-CCEEEEE--eCCCCCHHHHHHHHHHHHhcCCCE
Confidence 344443 55553 5555555543 4 4444321 234443333444556666555553
No 78
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=28.74 E-value=3.6e+02 Score=23.02 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCC-ceeEEEecCCC
Q 023828 233 LVDVVNDRIKHCLSHAVGDAD-ECVVCAGTDRC 264 (276)
Q Consensus 233 L~~lL~dRl~eAl~~~~~~~~-~~~vlvG~Gs~ 264 (276)
-..-+.+|+..++.++..... ..+++|.||..
T Consensus 124 s~~~~~~R~~~~~~~~~~~~~~~~vlvVsHg~~ 156 (208)
T COG0406 124 SLADVSKRVVAALAELLRSPPGNNVLVVSHGGV 156 (208)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCeEEEEEChHH
Confidence 344556777777776543222 26999999864
No 79
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=28.57 E-value=1.7e+02 Score=24.34 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEee
Q 023828 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHME 167 (276)
Q Consensus 127 ~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE 167 (276)
.+||||+||-.- ...+..+++++. .....+..++.+
T Consensus 2 vGIVlVSHs~~l---A~gl~~~~~~i~--~~~~i~~~gg~~ 37 (124)
T PRK14484 2 VGIVIVSHSKKI---AEGVKDLIKQMA--PDVPIIYAGGTE 37 (124)
T ss_pred eeEEEEeCcHHH---HHHHHHHHHHhh--CCCCEEEecCCC
Confidence 479999999533 344556666665 222234445444
No 80
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=28.37 E-value=1.8e+02 Score=28.16 Aligned_cols=97 Identities=18% Similarity=0.149 Sum_probs=58.4
Q ss_pred CcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCC-H-HHHHHHHHHcCCCeEEEEeecc------cc
Q 023828 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPS-I-KDAFGSCVQQGANRVIVSPFFL------FP 197 (276)
Q Consensus 126 ~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~Ps-L-~eaLe~L~a~G~~~VvVVPLFL------~~ 197 (276)
...-|.++-|++.--....+.++.+.+++..+.....--.+| +.|. + .+-++.|.+.|+++|-+=-==+ .-
T Consensus 55 ~i~tiy~GGGTPs~l~~~~L~~ll~~i~~~f~~~~~~eit~E-~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l 133 (380)
T PRK09057 55 TLTSIFFGGGTPSLMQPETVAALLDAIARLWPVADDIEITLE-ANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFL 133 (380)
T ss_pred CcCeEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCccEEEE-ECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHc
Confidence 345789999998765667788999999887654321122356 3453 3 4778888888888877642221 11
Q ss_pred c-ccccccHHHHHHHHHhhCCCccEEE
Q 023828 198 G-RHWCQDIPSLTAEAAKEHPGVPYIV 223 (276)
Q Consensus 198 G-~H~~~DIp~~l~~l~~~~p~v~I~v 223 (276)
| .|...++-+.++.+++.+..+.+.+
T Consensus 134 ~R~~~~~~~~~ai~~~~~~~~~v~~dl 160 (380)
T PRK09057 134 GRLHSVAEALAAIDLAREIFPRVSFDL 160 (380)
T ss_pred CCCCCHHHHHHHHHHHHHhCccEEEEe
Confidence 2 3334455555555555454444433
No 81
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=27.71 E-value=2.6e+02 Score=21.98 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=16.4
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHHHHH
Q 023828 128 GVIIVDHGSRRRESNLMLKQFVAMFREK 155 (276)
Q Consensus 128 aLLLV~HGSr~pea~~~l~~lA~~L~~r 155 (276)
+|||++||. ....+...++++...
T Consensus 1 giii~sHG~----~A~g~~~~~~~i~G~ 24 (116)
T PF03610_consen 1 GIIIASHGS----LAEGLLESAEMILGE 24 (116)
T ss_dssp EEEEEEETT----HHHHHHHHHHHHHTS
T ss_pred CEEEEECcH----HHHHHHHHHHHHcCC
Confidence 589999993 334466667776655
No 82
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=26.49 E-value=4.8e+02 Score=24.01 Aligned_cols=90 Identities=13% Similarity=0.143 Sum_probs=47.7
Q ss_pred cEEEEEeCCCCCc-hhHHHHHHHHHHHHHHcC-CccEEEEEeecCCCCHHHHHHHH---HHcCCCeEEEEeecccccccc
Q 023828 127 DGVIIVDHGSRRR-ESNLMLKQFVAMFREKTG-YLIVEPAHMELAEPSIKDAFGSC---VQQGANRVIVSPFFLFPGRHW 201 (276)
Q Consensus 127 ~aLLLV~HGSr~p-ea~~~l~~lA~~L~~r~~-~~~V~~AfLE~a~PsL~eaLe~L---~a~G~~~VvVVPLFL~~G~H~ 201 (276)
.++++.|+-.-.. =..++..++.+...+... ..+|..+ .+..+++++++.. .+.|++-|.++|-+.+. ..
T Consensus 37 ~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viag---v~~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~--~~ 111 (288)
T cd00954 37 DGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAH---VGSLNLKESQELAKHAEELGYDAISAITPFYYK--FS 111 (288)
T ss_pred CEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEec---cCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC--CC
Confidence 5666665433221 123445555554444433 2344444 2346777777644 56799999887655443 23
Q ss_pred cccHHHHHHHHHhhCCCccE
Q 023828 202 CQDIPSLTAEAAKEHPGVPY 221 (276)
Q Consensus 202 ~~DIp~~l~~l~~~~p~v~I 221 (276)
.+.|-+-.+.+.+.-|+..+
T Consensus 112 ~~~i~~~~~~v~~a~~~lpi 131 (288)
T cd00954 112 FEEIKDYYREIIAAAASLPM 131 (288)
T ss_pred HHHHHHHHHHHHHhcCCCCE
Confidence 44566666666554433444
No 83
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.33 E-value=2.3e+02 Score=28.56 Aligned_cols=66 Identities=20% Similarity=0.396 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCeEEEEeecc-ccccccc---ccHHHHHHHHHhhCCCc---cEEEeCCCCCCHHHHHHHHH
Q 023828 173 IKDAFGSCVQQGANRVIVSPFFL-FPGRHWC---QDIPSLTAEAAKEHPGV---PYIVTAPLGLHEQLVDVVND 239 (276)
Q Consensus 173 L~eaLe~L~a~G~~~VvVVPLFL-~~G~H~~---~DIp~~l~~l~~~~p~v---~I~va~PLG~~p~L~~lL~d 239 (276)
+-+-+++|+++|+++|+++--=. ..|.-.. .++++.++.+.+ .+|. ++.+..|....+.+++++.+
T Consensus 178 Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~-I~G~~riR~~~~~P~~~~d~lI~~~~~ 250 (437)
T COG0621 178 ILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSK-IPGIERIRFGSSHPLEFTDDLIEAIAE 250 (437)
T ss_pred HHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhc-CCCceEEEEecCCchhcCHHHHHHHhc
No 84
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.05 E-value=2.7e+02 Score=24.33 Aligned_cols=18 Identities=6% Similarity=0.222 Sum_probs=9.8
Q ss_pred HHHHHHHHcCCCeEEEEe
Q 023828 175 DAFGSCVQQGANRVIVSP 192 (276)
Q Consensus 175 eaLe~L~a~G~~~VvVVP 192 (276)
+.++.+..++++-|++.|
T Consensus 48 ~~i~~l~~~~vdgiii~~ 65 (271)
T cd06312 48 RLIEAAIAAKPDGIVVTI 65 (271)
T ss_pred HHHHHHHHhCCCEEEEeC
Confidence 444555555555555555
No 85
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=25.79 E-value=1.8e+02 Score=25.70 Aligned_cols=42 Identities=21% Similarity=0.206 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHcCCCeEEEEeecccccccccccHHHHHHHHHhhCCCccEE
Q 023828 172 SIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAEAAKEHPGVPYI 222 (276)
Q Consensus 172 sL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DIp~~l~~l~~~~p~v~I~ 222 (276)
++..+++.|++.|.++|.++=++.. ++.++.+.+.+|++.|.
T Consensus 139 Tl~~ai~~L~~~G~~~I~~~~ll~~---------~~gl~~l~~~~p~v~i~ 180 (209)
T PRK00129 139 SAIAAIDLLKKRGAKNIKVLCLVAA---------PEGIKALEEAHPDVEIY 180 (209)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEecC---------HHHHHHHHHHCCCcEEE
Confidence 3556666666666666666654221 23344555566666553
No 86
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=25.69 E-value=2.2e+02 Score=25.56 Aligned_cols=106 Identities=19% Similarity=0.255 Sum_probs=59.6
Q ss_pred CcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccccH
Q 023828 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDI 205 (276)
Q Consensus 126 ~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DI 205 (276)
.+-+++++-|.-..+...-.-.=|++=.-|.....|.+--+ .++-.+.+++..... ..++-+ +...|......|
T Consensus 83 GKRvIiiGGGAqVsqVA~GAIsEADRHNiRGERISvDTiPl-VGEE~laEAVkAV~r--LpRv~i---LVLAGslMGGkI 156 (218)
T COG1707 83 GKRVIIIGGGAQVSQVARGAISEADRHNIRGERISVDTIPL-VGEEELAEAVKAVAR--LPRVGI---LVLAGSLMGGKI 156 (218)
T ss_pred CcEEEEECCchhHHHHHHhhcchhhhcccccceeeeecccc-cChHHHHHHHHHHhc--ccccee---EEEecccccchH
Confidence 46788888776543332111111111111111222322111 134456666665533 223332 233677777789
Q ss_pred HHHHHHHHhhCCCccEEEeCCCCCCHHHHHHHH
Q 023828 206 PSLTAEAAKEHPGVPYIVTAPLGLHEQLVDVVN 238 (276)
Q Consensus 206 p~~l~~l~~~~p~v~I~va~PLG~~p~L~~lL~ 238 (276)
.+.++++++.+ ++.+.-..-+|.-|.+++++.
T Consensus 157 teaVk~lr~~h-gI~VISL~M~GSVpdVADlVv 188 (218)
T COG1707 157 TEAVKELREEH-GIPVISLNMFGSVPDVADLVV 188 (218)
T ss_pred HHHHHHHHHhc-CCeEEEeccCCCCcchhheee
Confidence 99999998775 578888888999999988876
No 87
>PRK05481 lipoyl synthase; Provisional
Probab=25.31 E-value=3.1e+02 Score=25.61 Aligned_cols=10 Identities=10% Similarity=0.162 Sum_probs=7.6
Q ss_pred ceeEEEecCC
Q 023828 254 ECVVCAGTDR 263 (276)
Q Consensus 254 ~~~vlvG~Gs 263 (276)
.+.+++|+|-
T Consensus 199 ~t~~IvGfGE 208 (289)
T PRK05481 199 KSGLMVGLGE 208 (289)
T ss_pred eeeeEEECCC
Confidence 5689999953
No 88
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=24.71 E-value=3.7e+02 Score=23.87 Aligned_cols=87 Identities=14% Similarity=0.176 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccccHHHHHHHHHhhCCCcc
Q 023828 141 SNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAEAAKEHPGVP 220 (276)
Q Consensus 141 a~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DIp~~l~~l~~~~p~v~ 220 (276)
+...+.+..+.+++.-. .+.++. .|+-...-..+.+.| ++++-++|.-+.+|+...++.+.. | +=
T Consensus 26 GkpLI~~v~~al~~~~d--~i~v~i----sp~tp~t~~~~~~~g------v~vi~tpG~GYv~Dl~~al~~l~~--P-~l 90 (177)
T COG2266 26 GKPLIDRVLEALRKIVD--EIIVAI----SPHTPKTKEYLESVG------VKVIETPGEGYVEDLRFALESLGT--P-IL 90 (177)
T ss_pred CccHHHHHHHHHHhhcC--cEEEEe----CCCCHhHHHHHHhcC------ceEEEcCCCChHHHHHHHHHhcCC--c-eE
Confidence 34456666777776333 355552 343333333333334 788889999888899888886643 3 11
Q ss_pred EEEeCCCCCCHHHHHHHHHHHH
Q 023828 221 YIVTAPLGLHEQLVDVVNDRIK 242 (276)
Q Consensus 221 I~va~PLG~~p~L~~lL~dRl~ 242 (276)
+.-+.=..-.|.+++.+.++..
T Consensus 91 vvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 91 VVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred EEecccccCCHHHHHHHHHHHh
Confidence 1122223345888988888876
No 89
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=24.30 E-value=1.6e+02 Score=22.68 Aligned_cols=59 Identities=15% Similarity=0.298 Sum_probs=32.9
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeec--CC-----CCHHHHHHHHHH--cCCCeEEEEee
Q 023828 129 VIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMEL--AE-----PSIKDAFGSCVQ--QGANRVIVSPF 193 (276)
Q Consensus 129 LLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~--a~-----PsL~eaLe~L~a--~G~~~VvVVPL 193 (276)
+||+.||.... ...+..+++.+.+. ++ .|. ..++ .. +.++++++.+.+ .+.++|+++=+
T Consensus 1 ~vv~~HG~~~~--~~~~~~~~~~l~~~-G~-~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~ 68 (145)
T PF12695_consen 1 VVVLLHGWGGS--RRDYQPLAEALAEQ-GY-AVV--AFDYPGHGDSDGADAVERVLADIRAGYPDPDRIILIGH 68 (145)
T ss_dssp EEEEECTTTTT--THHHHHHHHHHHHT-TE-EEE--EESCTTSTTSHHSHHHHHHHHHHHHHHCTCCEEEEEEE
T ss_pred CEEEECCCCCC--HHHHHHHHHHHHHC-CC-EEE--EEecCCCCccchhHHHHHHHHHHHhhcCCCCcEEEEEE
Confidence 57899999764 33477888888876 43 222 2331 11 224444554321 35677777644
No 90
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=24.21 E-value=4.5e+02 Score=22.45 Aligned_cols=54 Identities=6% Similarity=0.095 Sum_probs=24.8
Q ss_pred CchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEee
Q 023828 138 RRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (276)
Q Consensus 138 ~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPL 193 (276)
++-....+..+.+.+++ .+ +.+.+.+.....-...+.++.+..++++-|++.|.
T Consensus 11 ~~~~~~~~~gi~~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (268)
T cd01575 11 NSVFADVLQGISDVLEA-AG-YQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGL 64 (268)
T ss_pred chhHHHHHHHHHHHHHH-cC-CEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCC
Confidence 33333444444444444 22 33444333222222345566666666666666654
No 91
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=24.05 E-value=3.5e+02 Score=23.15 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=9.0
Q ss_pred HHHHHHHHcCCCeEEEEe
Q 023828 175 DAFGSCVQQGANRVIVSP 192 (276)
Q Consensus 175 eaLe~L~a~G~~~VvVVP 192 (276)
+.++.+.+.+++-|++.|
T Consensus 46 ~~~~~l~~~~vdgiii~~ 63 (266)
T cd06282 46 DAVETLLRQRVDGLILTV 63 (266)
T ss_pred HHHHHHHhcCCCEEEEec
Confidence 444455555555555444
No 92
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=23.84 E-value=86 Score=24.95 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHcCCCeEEEEee
Q 023828 170 EPSIKDAFGSCVQQGANRVIVSPF 193 (276)
Q Consensus 170 ~PsL~eaLe~L~a~G~~~VvVVPL 193 (276)
+..+.+.+++|.+.|++.|.|.|.
T Consensus 73 ~~~v~~~~~~Lk~~GA~~Ilv~~i 96 (100)
T TIGR03455 73 EKVVNELIDKLKAAGARDILVLPI 96 (100)
T ss_pred HHHHHHHHHHHHHcCCCeEEEech
Confidence 445789999999999999999986
No 93
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=23.73 E-value=37 Score=32.74 Aligned_cols=17 Identities=41% Similarity=0.757 Sum_probs=14.4
Q ss_pred cCCCCcccccccchhhh
Q 023828 25 CHPGPVNDIVSLSSSIA 41 (276)
Q Consensus 25 ~~~~~~~~~~~~~~~~~ 41 (276)
-||||||-.+.+++.++
T Consensus 269 mHP~PvnR~~EI~~~v~ 285 (316)
T COG0540 269 MHPLPVNRVVEIASEVD 285 (316)
T ss_pred ECCCCccCCCcCchhhh
Confidence 49999999999887763
No 94
>PRK10785 maltodextrin glucosidase; Provisional
Probab=23.60 E-value=95 Score=32.11 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=24.7
Q ss_pred HHHHHHHHHHcCCCeEEEEeeccccccc
Q 023828 173 IKDAFGSCVQQGANRVIVSPFFLFPGRH 200 (276)
Q Consensus 173 L~eaLe~L~a~G~~~VvVVPLFL~~G~H 200 (276)
|.+-|+.|++.|++.|.+-|+|-.++.|
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~h 208 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVH 208 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCC
Confidence 6677788899999999999999988877
No 95
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=23.31 E-value=7.3e+02 Score=24.52 Aligned_cols=115 Identities=18% Similarity=0.180 Sum_probs=77.2
Q ss_pred CCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcC-Cc-cEEEEEeecCCCC-H-HHHHHHHHHcCCCeEEEEeecc-----
Q 023828 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFREKTG-YL-IVEPAHMELAEPS-I-KDAFGSCVQQGANRVIVSPFFL----- 195 (276)
Q Consensus 125 ~~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~-~~-~V~~AfLE~a~Ps-L-~eaLe~L~a~G~~~VvVVPLFL----- 195 (276)
..-.-|.+|+|++.-=..+.++++-..|++..+ .. ..+.. +|. .|. + .+-++.+.+.|+.||=+-.-=+
T Consensus 86 ~~v~ti~~GGGTPslL~~~~l~~ll~~l~~~~~~~~~~~Eit-iE~-nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~l 163 (416)
T COG0635 86 REVKTIYFGGGTPSLLSPEQLERLLKALRELFNDLDPDAEIT-IEA-NPGTVEAEKFKALKEAGVNRISLGVQSFNDEVL 163 (416)
T ss_pred CeEEEEEECCCccccCCHHHHHHHHHHHHHhcccCCCCceEE-EEe-CCCCCCHHHHHHHHHcCCCEEEeccccCCHHHH
Confidence 357789999999876677889999999998884 22 24554 785 565 4 7888999999999987653322
Q ss_pred -ccc-ccccccHHHHHHHHHhh-CCC--ccEEEeCCCCCCHHHHHHHHHHH
Q 023828 196 -FPG-RHWCQDIPSLTAEAAKE-HPG--VPYIVTAPLGLHEQLVDVVNDRI 241 (276)
Q Consensus 196 -~~G-~H~~~DIp~~l~~l~~~-~p~--v~I~va~PLG~~p~L~~lL~dRl 241 (276)
.-| .|...++.+.+..+++. ++. +.+.++-|....+.+.+-+..-+
T Consensus 164 k~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~~~~~l~~a~ 214 (416)
T COG0635 164 KALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQTLESLKEDLEQAL 214 (416)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHH
Confidence 223 23334444555555543 443 46678888888877776655443
No 96
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=23.26 E-value=7e+02 Score=24.27 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=39.4
Q ss_pred CCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEee
Q 023828 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (276)
Q Consensus 125 ~~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPL 193 (276)
++.-++||+-||......+. ++.|++.. ..|.+.-+..-.|.-.+.+.++. +++++|+|+=-
T Consensus 272 ~~ad~~iv~~Gs~~~~a~eA----v~~Lr~~G--~~v~~l~~~~l~Pfp~~~i~~~~-~~~k~VivvEe 333 (376)
T PRK08659 272 EDAEVVVVAYGSVARSARRA----VKEAREEG--IKVGLFRLITVWPFPEEAIRELA-KKVKAIVVPEM 333 (376)
T ss_pred CCCCEEEEEeCccHHHHHHH----HHHHHhcC--CceEEEEeCeecCCCHHHHHHHH-hcCCEEEEEeC
Confidence 45669999999976555443 44455432 23444444444687777888876 47899888644
No 97
>PF06999 Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: IPR009737 This family contains a number of bacterial and eukaryotic proteins approximately 400 residues long that resemble ferredoxin and appear to have sucrolytic activity [].
Probab=22.90 E-value=3.6e+02 Score=23.85 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=50.9
Q ss_pred CCcEEEEEeCCCCCch----hHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEE----eeccc
Q 023828 125 DKDGVIIVDHGSRRRE----SNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVS----PFFLF 196 (276)
Q Consensus 125 ~~~aLLLV~HGSr~pe----a~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVV----PLFL~ 196 (276)
.+.-||+.+||+||.. +.....+|.+.++++.-.. ..+.+..+-.- .++ +..|+|+ |-..-
T Consensus 131 ~~~~iLVCtHg~RD~rCg~~Gp~l~~~l~~~~~~~~l~~-~~V~~iSHiGG------Hkf----AgNvIiy~~~~p~g~w 199 (230)
T PF06999_consen 131 DKPLILVCTHGKRDKRCGILGPPLARELEKELRERGLSR-DRVWEISHIGG------HKF----AGNVIIYSKPKPDGIW 199 (230)
T ss_pred CCCEEEEcCCCCcCCchhcccHHHHHHHHHHhhhcCCcc-ceEEEeccccc------cee----cCeEEEEecCCCcEEE
Confidence 4667899999999864 4556677777777653211 11333332000 011 3478999 99999
Q ss_pred ccccccccHHHHHHH-HH
Q 023828 197 PGRHWCQDIPSLTAE-AA 213 (276)
Q Consensus 197 ~G~H~~~DIp~~l~~-l~ 213 (276)
.|+-.-.|++.++++ +.
T Consensus 200 yGrv~p~~v~~iv~~t~~ 217 (230)
T PF06999_consen 200 YGRVTPEDVEGIVDATIL 217 (230)
T ss_pred EEeeCHHHHHHHHHHHHh
Confidence 999988889998887 44
No 98
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=22.87 E-value=4.6e+02 Score=22.55 Aligned_cols=57 Identities=9% Similarity=-0.029 Sum_probs=32.4
Q ss_pred CCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEee
Q 023828 135 GSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (276)
Q Consensus 135 GSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPL 193 (276)
...++-+...+..+.+.+++. + +.+.+.+.+...-...+.++.+.+.+++-|++.|.
T Consensus 8 ~~~~~~~~~~~~gi~~~~~~~-g-~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (269)
T cd06275 8 TSTNPFFAEVVRGVEQYCYRQ-G-YNLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCS 64 (269)
T ss_pred CCCcchHHHHHHHHHHHHHHc-C-CEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 344455555566666666653 3 33444433322122346677777778888888775
No 99
>PRK15381 pathogenicity island 2 effector protein SseJ; Provisional
Probab=22.51 E-value=1.4e+02 Score=29.76 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCCeEEEE--------eecccccc--c-------ccccHHHHHHHHHhhCCCccEEEeCCCC
Q 023828 174 KDAFGSCVQQGANRVIVS--------PFFLFPGR--H-------WCQDIPSLTAEAAKEHPGVPYIVTAPLG 228 (276)
Q Consensus 174 ~eaLe~L~a~G~~~VvVV--------PLFL~~G~--H-------~~~DIp~~l~~l~~~~p~v~I~va~PLG 228 (276)
.+.|++|.+.|+++|+|. |+...... . ...-+.+.++++++++|++.+.+..-..
T Consensus 264 ~~~l~~Ly~lGARk~vV~nlpPlGC~P~~~~~~~~~~~N~~a~~fN~~L~~~L~~L~~~~pg~~ivy~D~y~ 335 (408)
T PRK15381 264 IDDIEKIISGGVNNVLVMGIPDLSLTPYGKHSDEKRKLKDESIAHNALLKTNVEELKEKYPQHKICYYETAD 335 (408)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEhHH
Confidence 455678888999999997 44432110 0 0112333455566678888887665433
No 100
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.36 E-value=4.6e+02 Score=22.67 Aligned_cols=58 Identities=12% Similarity=0.007 Sum_probs=30.1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEee
Q 023828 134 HGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (276)
Q Consensus 134 HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPL 193 (276)
....++-....+..+.+.+++ .+ +.+.+...........+.++.+...+++-|++.|.
T Consensus 7 ~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06292 7 PELSNPIFPAFAEAIEAALAQ-YG-YTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISS 64 (273)
T ss_pred CCCcCchHHHHHHHHHHHHHH-CC-CEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 334444455555555555555 33 23433333222222346667777777777777664
No 101
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=21.99 E-value=2.6e+02 Score=25.97 Aligned_cols=48 Identities=10% Similarity=0.196 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHcCCccEEEEEeecCCCCHH--HHHHHHHHcCCCeEEEEe
Q 023828 143 LMLKQFVAMFREKTGYLIVEPAHMELAEPSIK--DAFGSCVQQGANRVIVSP 192 (276)
Q Consensus 143 ~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~--eaLe~L~a~G~~~VvVVP 192 (276)
..--+.|-+|+++++...|.+ +..+.|+.+ ++|+++.+.|+++.+++-
T Consensus 39 ~~AlE~Alrlke~~~g~~Vtv--vs~Gp~~a~~~~~lr~aLAmGaD~avli~ 88 (256)
T PRK03359 39 LNAIEAACQLKQQAAEAQVTA--LSVGGKALTNAKGRKDVLSRGPDELIVVI 88 (256)
T ss_pred HHHHHHHHHHhhhcCCCEEEE--EEECCcchhhHHHHHHHHHcCCCEEEEEe
Confidence 344556777888764334544 344777755 789999999999999885
No 102
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=21.92 E-value=3.3e+02 Score=27.26 Aligned_cols=84 Identities=18% Similarity=0.268 Sum_probs=55.3
Q ss_pred CcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccccH
Q 023828 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDI 205 (276)
Q Consensus 126 ~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DI 205 (276)
..-++++.||-....-..-++.++..++++. + .+. .|- .+|+..+-+.-==++.+.++ .||
T Consensus 124 ~~P~vvilpGltg~S~~~YVr~lv~~a~~~G-~-r~V-VfN---------------~RG~~g~~LtTpr~f~ag~t-~Dl 184 (409)
T KOG1838|consen 124 TDPIVVILPGLTGGSHESYVRHLVHEAQRKG-Y-RVV-VFN---------------HRGLGGSKLTTPRLFTAGWT-EDL 184 (409)
T ss_pred CCcEEEEecCCCCCChhHHHHHHHHHHHhCC-c-EEE-EEC---------------CCCCCCCccCCCceeecCCH-HHH
Confidence 4578999999887555566888888887753 3 222 222 24544444443333445554 489
Q ss_pred HHHHHHHHhhCCCccE-EEeCCCC
Q 023828 206 PSLTAEAAKEHPGVPY-IVTAPLG 228 (276)
Q Consensus 206 p~~l~~l~~~~p~v~I-~va~PLG 228 (276)
.+.++.++++||..++ .++..+|
T Consensus 185 ~~~v~~i~~~~P~a~l~avG~S~G 208 (409)
T KOG1838|consen 185 REVVNHIKKRYPQAPLFAVGFSMG 208 (409)
T ss_pred HHHHHHHHHhCCCCceEEEEecch
Confidence 9999999999997744 5777788
No 103
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.79 E-value=3.2e+02 Score=23.70 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=5.4
Q ss_pred HHHHHHHHHcC
Q 023828 174 KDAFGSCVQQG 184 (276)
Q Consensus 174 ~eaLe~L~a~G 184 (276)
.+.++++.+.|
T Consensus 72 ~~~i~~~~~~~ 82 (271)
T cd06321 72 APAVKRAQAAG 82 (271)
T ss_pred HHHHHHHHHCC
Confidence 44555554444
No 104
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=21.49 E-value=5e+02 Score=22.99 Aligned_cols=64 Identities=6% Similarity=0.032 Sum_probs=39.1
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEee
Q 023828 128 GVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (276)
Q Consensus 128 aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPL 193 (276)
.|-+|.....++-....+..+.+.+++. + +.+.+...+...-.-.+.++.+.+.+++-|+|.|.
T Consensus 37 ~ig~v~~~~~~~~~~~~~~gi~~~~~~~-g-~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 100 (309)
T PRK11041 37 TILVIVPDICDPFFSEIIRGIEVTAAEH-G-YLVLIGDCAHQNQQEKTFVNLIITKQIDGMLLLGS 100 (309)
T ss_pred EEEEEeCCCcCccHHHHHHHHHHHHHHC-C-CEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 4555555555556666677777777764 3 34444433221111346778888889999999864
No 105
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=21.48 E-value=3.7e+02 Score=23.24 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=25.6
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCC-HHHHHHHHHHcCCCeEEEEee
Q 023828 136 SRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPS-IKDAFGSCVQQGANRVIVSPF 193 (276)
Q Consensus 136 Sr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~Ps-L~eaLe~L~a~G~~~VvVVPL 193 (276)
..++-+......+.+.+++..+ +.+.++... ..+. ..+.++.+.+.+++-++|.|.
T Consensus 9 ~~~~~~~~~~~gi~~~~~~~~~-~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~ 65 (272)
T cd06301 9 FDDNFLTLLRNAMKEHAKVLGG-VELQFEDAK-NDVATQLSQVENFIAQGVDAIIVVPV 65 (272)
T ss_pred cCCHHHHHHHHHHHHHHHHcCC-cEEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3444444444555555554122 233333221 1222 235555666666666666654
No 106
>PRK01060 endonuclease IV; Provisional
Probab=21.35 E-value=5.9e+02 Score=22.74 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=11.4
Q ss_pred HHHHHHHHHHcCCCeEEEE
Q 023828 173 IKDAFGSCVQQGANRVIVS 191 (276)
Q Consensus 173 L~eaLe~L~a~G~~~VvVV 191 (276)
++++++.+.+.|++.|-+.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~ 32 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIF 32 (281)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 5666666666666655543
No 107
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=21.27 E-value=4.7e+02 Score=22.54 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=30.5
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEee
Q 023828 136 SRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (276)
Q Consensus 136 Sr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPL 193 (276)
..++-....+..+.+.+++ .+ +.+.+...........+.++.+...+++-|++.|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~-~g-~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (264)
T cd06274 9 LENRSFARIAKRLEALARE-RG-YQLLIACSDDDPETERETVETLIARQVDALIVAGS 64 (264)
T ss_pred ccCchHHHHHHHHHHHHHH-CC-CEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3445555555555555555 33 33444333322222456677777777877777764
No 108
>PF06688 DUF1187: Protein of unknown function (DUF1187); InterPro: IPR009572 This family consists of several short, hypothetical bacterial proteins of around 62 residues in length. Members of this family are found in Escherichia coli and Salmonella typhi. The function of this family is unknown.
Probab=21.23 E-value=24 Score=26.01 Aligned_cols=21 Identities=38% Similarity=0.748 Sum_probs=18.8
Q ss_pred hhhccccCCCCCCCchhhhhc
Q 023828 46 KITSSLHKPSETPNSWKADQN 66 (276)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~ 66 (276)
|||...+||-..|-+|.+-+.
T Consensus 2 kItAtI~KpG~~Pv~W~rys~ 22 (61)
T PF06688_consen 2 KITATIIKPGNTPVNWTRYSD 22 (61)
T ss_pred ceEEEEEcCCCCCeeeEEecC
Confidence 789999999999999998664
No 109
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=21.19 E-value=3.9e+02 Score=22.80 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=8.9
Q ss_pred HHHHHHHHcCCCeEEEEe
Q 023828 175 DAFGSCVQQGANRVIVSP 192 (276)
Q Consensus 175 eaLe~L~a~G~~~VvVVP 192 (276)
+.++.+...+++-|++.|
T Consensus 46 ~~~~~l~~~~~dgiii~~ 63 (267)
T cd06283 46 EYLESLLAYQVDGLIVNP 63 (267)
T ss_pred HHHHHHHHcCcCEEEEeC
Confidence 444445445555555544
No 110
>PF07203 DUF1412: Protein of unknown function (DUF1412); InterPro: IPR009853 This family consists of several Caenorhabditis elegans proteins of around 70-75 residues in length. The function of this family is unknown.
Probab=21.18 E-value=43 Score=23.91 Aligned_cols=15 Identities=47% Similarity=0.775 Sum_probs=12.7
Q ss_pred ccccccccccCCCCc
Q 023828 16 YSLSWAQFPCHPGPV 30 (276)
Q Consensus 16 ~~~~~~~~~~~~~~~ 30 (276)
-||.|||.|-|-.|.
T Consensus 32 tslGWaQVph~~SPm 46 (53)
T PF07203_consen 32 TSLGWAQVPHVYSPM 46 (53)
T ss_pred cccchhhCccccCcc
Confidence 589999999987774
No 111
>PRK08508 biotin synthase; Provisional
Probab=21.03 E-value=6.6e+02 Score=23.12 Aligned_cols=112 Identities=13% Similarity=0.004 Sum_probs=57.7
Q ss_pred cEEEEEeCCCCCc-hhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEE----eeccccc---
Q 023828 127 DGVIIVDHGSRRR-ESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVS----PFFLFPG--- 198 (276)
Q Consensus 127 ~aLLLV~HGSr~p-ea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVV----PLFL~~G--- 198 (276)
..+.++.-|-..+ ...+.+.++.+.++++.+...+. ++. +.. -.+.+++|++.|++.+.+- +-+ ++.
T Consensus 58 ~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~-~s~--G~~-~~e~l~~Lk~aGld~~~~~lEt~~~~-~~~i~~ 132 (279)
T PRK08508 58 LGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLI-ACN--GTA-SVEQLKELKKAGIFSYNHNLETSKEF-FPKICT 132 (279)
T ss_pred CEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEE-ecC--CCC-CHHHHHHHHHcCCCEEcccccchHHH-hcCCCC
Confidence 4566665555322 23355677778888876643222 222 222 3789999999999877631 211 111
Q ss_pred ccccccHHHHHHHHHhhCCCccEEEeCCCCCCHHHHHHHHHHHHH
Q 023828 199 RHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVDVVNDRIKH 243 (276)
Q Consensus 199 ~H~~~DIp~~l~~l~~~~p~v~I~va~PLG~~p~L~~lL~dRl~e 243 (276)
.|.-.++-+.++.+++.+-.+.-.+.-.+|+.++-..-....+++
T Consensus 133 ~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed~~~~l~~lr~ 177 (279)
T PRK08508 133 THTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSLAS 177 (279)
T ss_pred CCCHHHHHHHHHHHHHcCCeecceeEEecCCCHHHHHHHHHHHHc
Confidence 122234444555555443222223444567776544333344443
No 112
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=20.84 E-value=1.1e+02 Score=26.94 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=21.1
Q ss_pred HHHHHHHHHHcCCCeEEEEeecccc
Q 023828 173 IKDAFGSCVQQGANRVIVSPFFLFP 197 (276)
Q Consensus 173 L~eaLe~L~a~G~~~VvVVPLFL~~ 197 (276)
|.+-|+.|++.|++.|.+.|+|-.+
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~~~ 30 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFESP 30 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EESS
T ss_pred HHHhhHHHHHcCCCceecccccccc
Confidence 5667888999999999999999976
No 113
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=20.83 E-value=5.4e+02 Score=22.02 Aligned_cols=56 Identities=5% Similarity=-0.032 Sum_probs=27.6
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEee
Q 023828 136 SRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (276)
Q Consensus 136 Sr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPL 193 (276)
..++-....+..+.+.+++. + +.+.+...+.......+.++.+.+.+++-|++.|.
T Consensus 9 ~~~~~~~~i~~gi~~~~~~~-g-~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (260)
T cd06286 9 INHPYFSQLVDGIEKAALKH-G-YKVVLLQTNYDKEKELEYLELLKTKQVDGLILCSR 64 (260)
T ss_pred CCCchHHHHHHHHHHHHHHc-C-CEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 33444444555555555553 3 23333222211112345666666667777777664
No 114
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=20.47 E-value=1.5e+02 Score=23.72 Aligned_cols=12 Identities=8% Similarity=0.069 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 023828 143 LMLKQFVAMFRE 154 (276)
Q Consensus 143 ~~l~~lA~~L~~ 154 (276)
.....+++.|..
T Consensus 32 ~qa~~~~~~l~~ 43 (153)
T cd07067 32 EQARALGKRLKE 43 (153)
T ss_pred HHHHHHHHHHHh
Confidence 344555555554
No 115
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=20.31 E-value=4.6e+02 Score=23.57 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=19.9
Q ss_pred CCcEEEEEeCCCCCch-hHHHHHHHHHHHHHH
Q 023828 125 DKDGVIIVDHGSRRRE-SNLMLKQFVAMFREK 155 (276)
Q Consensus 125 ~~~aLLLV~HGSr~pe-a~~~l~~lA~~L~~r 155 (276)
.+.++|++.||+.... .......+++.|.++
T Consensus 25 ~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~ 56 (274)
T TIGR03100 25 HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEA 56 (274)
T ss_pred CCCeEEEEeCCccccCCchhHHHHHHHHHHHC
Confidence 3467888888875432 334456778888764
No 116
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=20.21 E-value=5.3e+02 Score=23.38 Aligned_cols=63 Identities=8% Similarity=-0.003 Sum_probs=34.7
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEe
Q 023828 128 GVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSP 192 (276)
Q Consensus 128 aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVP 192 (276)
.|-++..+..++-+...+..+.+.+++. + +.+.+.+.........+.++.+.+.+++-|++.|
T Consensus 61 ~i~vi~~~~~~~~~~~~~~gi~~~~~~~-g-~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~ 123 (341)
T PRK10703 61 SIGLLATSSEAPYFAEIIEAVEKNCYQK-G-YTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMC 123 (341)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHHHC-C-CEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 3444444555555655566666666653 3 3344443332112234667777777777777776
Done!