Query 023828
Match_columns 276
No_of_seqs 158 out of 1187
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 13:28:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023828.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023828hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lyh_A Cobalamin (vitamin B12) 100.0 8.2E-28 2.8E-32 195.3 13.1 123 122-247 1-123 (126)
2 2xws_A Sirohydrochlorin cobalt 99.9 3.9E-26 1.3E-30 185.8 9.5 121 125-248 2-129 (133)
3 2xwp_A Sirohydrochlorin cobalt 99.9 2.6E-25 8.9E-30 201.8 14.6 141 126-272 2-155 (264)
4 1tjn_A Sirohydrochlorin cobalt 99.9 9.5E-26 3.2E-30 190.7 9.7 121 125-248 23-150 (156)
5 2xvy_A Chelatase, putative; me 99.9 4.8E-24 1.6E-28 192.8 15.5 147 122-271 5-163 (269)
6 2jh3_A Ribosomal protein S2-re 99.8 4.5E-21 1.5E-25 188.1 4.5 141 125-274 2-159 (474)
7 2xwp_A Sirohydrochlorin cobalt 99.8 6.3E-19 2.2E-23 159.8 11.7 118 124-246 135-257 (264)
8 2xvy_A Chelatase, putative; me 99.7 2E-17 6.7E-22 149.4 7.3 121 124-248 144-268 (269)
9 2h1v_A Ferrochelatase; rossman 99.6 2E-15 6.7E-20 140.4 9.3 130 133-267 51-189 (310)
10 1lbq_A Ferrochelatase; rossman 99.5 4E-14 1.4E-18 134.6 12.6 131 133-265 68-208 (362)
11 2jh3_A Ribosomal protein S2-re 99.5 6.4E-15 2.2E-19 144.5 3.9 115 125-247 141-267 (474)
12 2h1v_A Ferrochelatase; rossman 99.2 3.2E-11 1.1E-15 112.0 11.7 121 125-246 174-309 (310)
13 3hcn_A Ferrochelatase, mitocho 99.1 6.8E-10 2.3E-14 105.4 13.7 138 135-273 65-212 (359)
14 1lbq_A Ferrochelatase; rossman 98.4 4.8E-07 1.6E-11 85.9 6.7 117 126-247 196-328 (362)
15 3hcn_A Ferrochelatase, mitocho 98.3 6E-06 2.1E-10 78.3 13.9 121 125-247 190-327 (359)
16 2amj_A Modulator of drug activ 43.2 1.3E+02 0.0045 24.8 9.0 64 127-195 12-82 (204)
17 3g1w_A Sugar ABC transporter; 40.2 65 0.0022 27.2 6.7 68 125-194 3-71 (305)
18 3r6w_A FMN-dependent NADH-azor 37.8 1.7E+02 0.0057 24.0 9.2 37 130-166 4-43 (212)
19 3mtq_A Putative phosphoenolpyr 36.7 1.7E+02 0.0059 23.8 8.8 55 123-183 18-73 (159)
20 1xg8_A Hypothetical protein SA 36.3 26 0.00089 27.6 3.1 64 139-202 26-91 (111)
21 3efb_A Probable SOR-operon reg 33.5 1.9E+02 0.0064 25.2 8.7 113 148-266 50-168 (266)
22 3l49_A ABC sugar (ribose) tran 28.1 1.8E+02 0.0063 24.0 7.5 65 127-193 6-70 (291)
23 3l6u_A ABC-type sugar transpor 28.1 1.8E+02 0.0061 24.1 7.4 65 127-193 9-73 (293)
24 3gdw_A Sigma-54 interaction do 27.4 1E+02 0.0036 24.5 5.5 28 125-155 3-30 (139)
25 3uug_A Multiple sugar-binding 27.2 1.6E+02 0.0056 24.9 7.2 67 126-194 3-69 (330)
26 4aie_A Glucan 1,6-alpha-glucos 27.0 56 0.0019 30.7 4.4 26 173-198 34-59 (549)
27 3m9w_A D-xylose-binding peripl 24.8 2E+02 0.0069 24.2 7.3 64 128-193 4-67 (313)
28 3nze_A Putative transcriptiona 24.3 2.7E+02 0.0091 24.2 8.1 132 128-265 24-162 (267)
29 3o74_A Fructose transport syst 24.1 2.3E+02 0.0079 23.0 7.4 65 128-194 4-68 (272)
30 3bed_A PTS system, IIA compone 23.8 95 0.0032 24.5 4.6 26 126-155 5-30 (142)
31 3jy6_A Transcriptional regulat 23.6 2.1E+02 0.0073 23.5 7.1 68 126-195 7-74 (276)
32 1rli_A Trp repressor binding p 23.0 1.7E+02 0.0059 22.8 6.1 25 130-156 6-30 (184)
33 3tb6_A Arabinose metabolism tr 22.9 2.4E+02 0.0081 23.3 7.3 66 127-194 16-81 (298)
34 3egc_A Putative ribose operon 22.5 2.5E+02 0.0084 23.3 7.3 67 126-194 8-74 (291)
35 3hs3_A Ribose operon repressor 22.3 2.5E+02 0.0084 23.3 7.3 65 126-192 10-75 (277)
36 2z1k_A (NEO)pullulanase; hydro 22.2 89 0.003 29.1 4.8 26 173-198 52-77 (475)
37 4aef_A Neopullulanase (alpha-a 22.2 84 0.0029 30.8 4.8 28 173-200 241-268 (645)
38 3gx1_A LIN1832 protein; APC633 21.4 2.9E+02 0.0098 21.5 7.0 28 125-155 3-30 (130)
39 3e61_A Putative transcriptiona 21.4 2.1E+02 0.0071 23.5 6.5 63 128-192 10-72 (277)
40 1t5b_A Acyl carrier protein ph 21.4 3E+02 0.01 21.6 9.3 37 130-166 4-43 (201)
41 1ea9_C Cyclomaltodextrinase; h 21.0 88 0.003 30.4 4.6 28 173-200 174-201 (583)
42 2hpv_A FMN-dependent NADH-azor 21.0 3.2E+02 0.011 21.8 9.5 37 130-166 4-44 (208)
43 2qs9_A Retinoblastoma-binding 20.9 1E+02 0.0036 23.7 4.3 64 128-191 5-72 (194)
44 1h3d_A ATP-phosphoribosyltrans 20.8 1.5E+02 0.0051 26.9 5.8 90 124-215 189-284 (299)
45 3o1i_D Periplasmic protein TOR 20.6 2.9E+02 0.01 22.8 7.4 67 126-195 5-74 (304)
46 2lnd_A De novo designed protei 20.4 2.8E+02 0.0095 20.8 8.0 89 145-249 15-103 (112)
47 3h75_A Periplasmic sugar-bindi 20.3 3.2E+02 0.011 23.5 7.8 63 127-192 4-70 (350)
48 4fhd_A Spore photoproduct lyas 20.3 1.7E+02 0.0057 27.4 6.1 70 169-241 235-313 (368)
49 1dbq_A Purine repressor; trans 20.2 3.4E+02 0.012 22.3 7.7 64 128-194 9-73 (289)
50 3cf4_G Acetyl-COA decarboxylas 20.2 94 0.0032 25.1 3.9 29 125-153 34-62 (170)
51 4gel_A Mitochondrial cardiolip 20.1 1E+02 0.0034 25.4 4.2 44 141-186 56-99 (220)
52 3kke_A LACI family transcripti 20.0 2.6E+02 0.009 23.5 7.0 65 128-194 17-81 (303)
No 1
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei}
Probab=99.95 E-value=8.2e-28 Score=195.31 Aligned_cols=123 Identities=28% Similarity=0.437 Sum_probs=113.8
Q ss_pred CCCCCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccc
Q 023828 122 GVGDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHW 201 (276)
Q Consensus 122 ~~~~~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~ 201 (276)
|+..+++||||+|||++++++..+..++++|+++. ..|++||+|++.|++++++++|.++|+++|+|+||||++|.|+
T Consensus 1 ~m~~~~alllv~HGS~~~~~~~~~~~l~~~l~~~~--~~V~~a~le~~~P~l~~~l~~l~~~G~~~vvvvPlfl~~G~H~ 78 (126)
T 3lyh_A 1 GMTQPHQIILLAHGSSDARWCETFEKLAEPTVESI--ENAAIAYMELAEPSLDTIVNRAKGQGVEQFTVVPLFLAAGRHL 78 (126)
T ss_dssp ----CEEEEEEECCCSCHHHHHHHHHHHHHHHHHS--TTCEEEESSSSSSBHHHHHHHHHHTTCCEEEEEECCSCCCHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHhhc--CCEEEEEEeCCCCCHHHHHHHHHHcCCCEEEEEecccCCCchh
Confidence 35567899999999999999999999999999998 4799999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhhCCCccEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 023828 202 CQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVDVVNDRIKHCLSH 247 (276)
Q Consensus 202 ~~DIp~~l~~l~~~~p~v~I~va~PLG~~p~L~~lL~dRl~eAl~~ 247 (276)
++|||+.++++++++ ++++++++|||.+|.+++++.+|+++++..
T Consensus 79 ~~Dip~~~~~~~~~~-~~~i~~~~~LG~~p~l~~~l~~ri~~al~~ 123 (126)
T 3lyh_A 79 RKDVPAMIERLEAEH-GVTIRLAEPIGKNPRLGLAIRDVVKEELER 123 (126)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEECCCGGGSHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh-CceEEEcCCCCCChHHHHHHHHHHHHHHhc
Confidence 999999999998877 889999999999999999999999999874
No 2
>2xws_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; 1.60A {Archaeoglobus fulgidus} PDB: 2dj5_A* 2xwq_A
Probab=99.93 E-value=3.9e-26 Score=185.79 Aligned_cols=121 Identities=19% Similarity=0.279 Sum_probs=110.9
Q ss_pred CCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeec-CCCCHHHHHHHHHHcCCCeEEEEeecccccccccc
Q 023828 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMEL-AEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQ 203 (276)
Q Consensus 125 ~~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~-a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~ 203 (276)
++++||||+|||++++++..+..++++|+++.++..|++||||+ +.|++++++++| |+++|+|+|||+++|.|+++
T Consensus 2 m~~alllv~HGS~~~~~~~~~~~la~~l~~~~~~~~V~~a~le~~~~Psl~~~l~~l---g~~~v~v~Plfl~~G~h~~~ 78 (133)
T 2xws_A 2 MRRGLVIVGHGSQLNHYREVMELHRKRIEESGAFDEVKIAFAARKRRPMPDEAIREM---NCDIIYVVPLFISYGLHVTE 78 (133)
T ss_dssp CCEEEEEEECSCCCHHHHHHHHHHHHHHHHHTSSSEEEEEESSTTCSSCHHHHHHHC---CCSEEEEEECCSSCCHHHHT
T ss_pred CcceEEEEECCCCCHHHHHHHHHHHHHHHhhCCCCcEEeeeeecCCCCCHHHHHHHc---CCCEEEEEeeeeCCCcchHh
Confidence 45899999999999999999999999999999888999999999 999999999999 99999999999999999999
Q ss_pred cHHHHHHHHHh------hCCCccEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q 023828 204 DIPSLTAEAAK------EHPGVPYIVTAPLGLHEQLVDVVNDRIKHCLSHA 248 (276)
Q Consensus 204 DIp~~l~~l~~------~~p~v~I~va~PLG~~p~L~~lL~dRl~eAl~~~ 248 (276)
|||+.++++++ +++++++++++|||.+|.+++++.+|+++++...
T Consensus 79 di~~~~~~~~~~~s~~~~~~~~~i~~~~pLg~~p~~~~~l~~ri~~a~~~~ 129 (133)
T 2xws_A 79 DLPDLLGFPRGRGIKEGEFEGKKVVICEPIGEDYFVTYAILNSVFRIGRDG 129 (133)
T ss_dssp HHHHHHTCCCSSSCEEEEETTEEEEECCCSTTSHHHHHHHHHHHHCCC---
T ss_pred HHHHHHHHhhccccccccCCCceEEEcCCCCCCHHHHHHHHHHHHHhhcCC
Confidence 99999887655 6788899999999999999999999999887653
No 3
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=99.93 E-value=2.6e-25 Score=201.82 Aligned_cols=141 Identities=11% Similarity=0.068 Sum_probs=127.0
Q ss_pred CcEEEEEeCCCCCchhHH-HHHHHHHHHHHHcCCccEEEEEee------------cCCCCHHHHHHHHHHcCCCeEEEEe
Q 023828 126 KDGVIIVDHGSRRRESNL-MLKQFVAMFREKTGYLIVEPAHME------------LAEPSIKDAFGSCVQQGANRVIVSP 192 (276)
Q Consensus 126 ~~aLLLV~HGSr~pea~~-~l~~lA~~L~~r~~~~~V~~AfLE------------~a~PsL~eaLe~L~a~G~~~VvVVP 192 (276)
+++||||+||||+++++. .++.+++.+++++|.+.|+.||++ ...|++.++|++|.++|+++|+|+|
T Consensus 2 ~~aillv~hGSr~~~~~~~~~~~~~~~v~~~~p~~~V~~af~s~~i~~~l~~~~g~~~psi~~aL~~l~~~G~~~vvV~P 81 (264)
T 2xwp_A 2 KKALLVVSFGTSYHDTCEKNIVACERDLAASCPDRDLFRAFTSGMIIRKLRQRDGIDIDTPLQALQKLAAQGYQDVAIQS 81 (264)
T ss_dssp CEEEEEEECCCSCHHHHHHHHHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHCCCCCCHHHHHHHHHHHTCCEEEEEE
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCeEEeehhhHHHHHHHHHhcCCCCCCHHHHHHHHHhCCCCEEEEEe
Confidence 579999999999999998 999999999999999999999994 3679999999999999999999999
Q ss_pred ecccccccccccHHHHHHHHHhhCCCccEEEeCCCCCCHHHHHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCcCCCcc
Q 023828 193 FFLFPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVDVVNDRIKHCLSHAVGDADECVVCAGTDRCRLYGAGLA 272 (276)
Q Consensus 193 LFL~~G~H~~~DIp~~l~~l~~~~p~v~I~va~PLG~~p~L~~lL~dRl~eAl~~~~~~~~~~~vlvG~Gs~~~~~~~~~ 272 (276)
+|+++|.|+. |||+.+++++..|+ ++++++|||.+|.+++.+.+++.+.+... +.++++|++||||.++ +|+++
T Consensus 82 l~l~~G~~~~-di~~~v~~~~~~~~--~i~~~~pl~~~~~~~~~l~~~l~~~~~~~--~~~~~lvl~gHGs~~~-~~~~~ 155 (264)
T 2xwp_A 82 LHIINGDEYE-KIVREVQLLRPLFT--RLTLGVPLLSSHNDYVQLMQALRQQMPSL--RQTEKVVFMGHGASHH-AFAAY 155 (264)
T ss_dssp CCSSSSHHHH-HHHHHHHHHGGGCS--EEEEECCSSCSHHHHHHHHHHHHTTSCCC--CTTEEEEEEECCCSSG-GGHHH
T ss_pred CcccCcHHHH-HHHHHHHHHHhhCC--ceEEecCCCCCHHHHHHHHHHHHHhcccc--CCCCeEEEEECCCCch-hhHHH
Confidence 9999999986 99999999988887 77899999999999999999888765432 3568999999999999 66554
No 4
>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest consortium for structural genomics, structure initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus} SCOP: c.92.1.3
Probab=99.92 E-value=9.5e-26 Score=190.66 Aligned_cols=121 Identities=19% Similarity=0.279 Sum_probs=111.4
Q ss_pred CCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeec-CCCCHHHHHHHHHHcCCCeEEEEeecccccccccc
Q 023828 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMEL-AEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQ 203 (276)
Q Consensus 125 ~~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~-a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~ 203 (276)
++.+||||+|||++++++..+.+++++|+++.++..|++||||+ ++|++++++++| |+++|+|+||||++|.|+++
T Consensus 23 M~~avlLv~HGS~~p~~~~~~~~la~~l~~~~~~~~V~~afle~~~~Psl~~~l~~l---G~~~VvVvPlfL~~G~h~~~ 99 (156)
T 1tjn_A 23 MRRGLVIVGHGSQLNHYREVMELHRKRIEESGAFDEVKIAFAARKRRPMPDEAIREM---NCDIIYVVPLFISYGLHVTE 99 (156)
T ss_dssp CCEEEEEEECCTTSTTHHHHHHHHHHHHHHHTSSSEEEEEECSSSCSSCHHHHHHHC---CCSEEEEEECCSSCSHHHHT
T ss_pred CCcCEEEEECCCCCHHHHHHHHHHHHHHHhhCCCCeEEEEEecCCCCCCHHHHHHHc---CCCEEEEEechhcCCchhHh
Confidence 45899999999999999999999999999999888999999999 999999999999 99999999999999999999
Q ss_pred cHHHHHHHHHh------hCCCccEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q 023828 204 DIPSLTAEAAK------EHPGVPYIVTAPLGLHEQLVDVVNDRIKHCLSHA 248 (276)
Q Consensus 204 DIp~~l~~l~~------~~p~v~I~va~PLG~~p~L~~lL~dRl~eAl~~~ 248 (276)
|||+.++++++ +++++++++++|||.+|.+++++.+|+++++...
T Consensus 100 DIp~~l~~~~~~~sw~~~~~~~~i~~~~pLG~~p~l~~~l~~ri~ea~~~~ 150 (156)
T 1tjn_A 100 DLPDLLGFPRGRGIKEGEFEGKKVVICEPIGEDYFVTYAILNSVFRIGRDG 150 (156)
T ss_dssp HHHHHHTCCCSSSCEEEEETTEEEEECCCSTTCHHHHHHHHHHHHCCC---
T ss_pred HHHHHHHHHHhcccccccCCCceEEEeCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 99999887655 6788999999999999999999999999887654
No 5
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=99.91 E-value=4.8e-24 Score=192.80 Aligned_cols=147 Identities=18% Similarity=0.171 Sum_probs=124.7
Q ss_pred CCCCCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEee-----------cCCCCHHHHHHHHHHcCCCeEEE
Q 023828 122 GVGDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHME-----------LAEPSIKDAFGSCVQQGANRVIV 190 (276)
Q Consensus 122 ~~~~~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE-----------~a~PsL~eaLe~L~a~G~~~VvV 190 (276)
.+.++++||||+|||++++++..+..+++.++++++..+|+.||++ ++.|++++++++|.++|+++|+|
T Consensus 5 ~~~~~~aillv~hGS~~~~~~~~~~~~~~~l~~~~~~~~V~~af~~~~i~~~l~~~~~~~P~i~~al~~l~~~G~~~ivV 84 (269)
T 2xvy_A 5 PKAQKTGILLVAFGTSVEEARPALDKMGDRVRAAHPDIPVRWAYTAKMIRAKLRAEGIAAPSPAEALAGMAEEGFTHVAV 84 (269)
T ss_dssp ---CCEEEEEEECCCCCTTTTHHHHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCceEEEEeCCCCcHHHHHHHHHHHHHHHHHCCCCeEEeehhhHHHHHHHHHcCCCCCCHHHHHHHHHHCCCCEEEE
Confidence 3566789999999999999999999999999999998899999999 88999999999999999999999
Q ss_pred EeecccccccccccHHHHHHHHHhhCC-CccEEEeCCCCCCHHHHHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCcCC
Q 023828 191 SPFFLFPGRHWCQDIPSLTAEAAKEHP-GVPYIVTAPLGLHEQLVDVVNDRIKHCLSHAVGDADECVVCAGTDRCRLYGA 269 (276)
Q Consensus 191 VPLFL~~G~H~~~DIp~~l~~l~~~~p-~v~I~va~PLG~~p~L~~lL~dRl~eAl~~~~~~~~~~~vlvG~Gs~~~~~~ 269 (276)
+|+|+++|.. .+||++.++.+.+... ..++++++|||.+|.+++++.+++++++... ...++++|++|||+.+ .+|
T Consensus 85 ~Pl~l~~G~~-~~di~~~~~~l~~~~~~~~~i~~~~pl~~~p~~i~~la~~i~~~~~~~-~~~~~~lll~~HGs~~-~~~ 161 (269)
T 2xvy_A 85 QSLHTIPGEE-FHGLLETAHAFQGLPKGLTRVSVGLPLIGTTADAEAVAEALVASLPAD-RKPGEPVVFMGHGTPH-PAD 161 (269)
T ss_dssp EECCSSSSHH-HHHHHHHHHHHTTCTTSCSEEEEECCSSCSHHHHHHHHHHHHHHSCTT-CCTTCCEEEEECCCSS-GGG
T ss_pred EeceeeccHh-HHHHHHHHHHHHHhhccCCeEEEeCCCCCCHHHHHHHHHHHHHhchhh-ccCCceEEEEECCCCh-hhc
Confidence 9999999985 5699998544432211 2588999999999999999999999987542 1345789999999998 555
Q ss_pred Cc
Q 023828 270 GL 271 (276)
Q Consensus 270 ~~ 271 (276)
..
T Consensus 162 ~~ 163 (269)
T 2xvy_A 162 IC 163 (269)
T ss_dssp GH
T ss_pred cH
Confidence 43
No 6
>2jh3_A Ribosomal protein S2-related protein; CBIX, SAD phasing, structural genomics, chelatase super-family fold, 4Fe-4S iron-sulphur cluster; 1.9A {Deinococcus radiodurans}
Probab=99.81 E-value=4.5e-21 Score=188.08 Aligned_cols=141 Identities=21% Similarity=0.265 Sum_probs=123.5
Q ss_pred CCcEEEEEeCCC-CCchhHHHHHHHHHHHHHHcC-----CccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeeccccc
Q 023828 125 DKDGVIIVDHGS-RRRESNLMLKQFVAMFREKTG-----YLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPG 198 (276)
Q Consensus 125 ~~~aLLLV~HGS-r~pea~~~l~~lA~~L~~r~~-----~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G 198 (276)
++.+||||+||| +++.++..+..++++|+++.+ +..|+.||+| +.|+++++|++| |+++|+|+|+|+++|
T Consensus 2 mk~alLLVgHGSp~~~~a~~~i~~La~~l~~~~~~~~L~~~~V~~Afle-~~PsI~eaL~~L---G~~rVvVvPLfl~~G 77 (474)
T 2jh3_A 2 ALRSLVLIGHGSHHHGESARATQQVAEALRGRGLAGHLPYDEVLEGYWQ-QEPGLRQVLRTV---AYSDVTVVPVFLSEG 77 (474)
T ss_dssp CBCEEEEEECCCSSCTHHHHHHHHHHHHHHHHHHTTCCSCSEEEEEESS-SSSBTTTGGGGC---CBSEEEEEECCSCCS
T ss_pred CcceEEEEeCCCCCChhHHHHHHHHHHHHHHhCCccccCCCeEEEEEcC-CCCCHHHHHHHc---CcCeEEEEEEehhcc
Confidence 568999999999 589999999999999999876 7789999999 899999999998 999999999999999
Q ss_pred ccccccHHHHHHHHHh----------hCCCccEEEeCCCCCCHHHHHHHHHHHHHHHhhcCCC-CCceeEEEecCCCCCc
Q 023828 199 RHWCQDIPSLTAEAAK----------EHPGVPYIVTAPLGLHEQLVDVVNDRIKHCLSHAVGD-ADECVVCAGTDRCRLY 267 (276)
Q Consensus 199 ~H~~~DIp~~l~~l~~----------~~p~v~I~va~PLG~~p~L~~lL~dRl~eAl~~~~~~-~~~~~vlvG~Gs~~~~ 267 (276)
.|+++|||+.++..+. .+++++|.+++|||.+|.+++++.+|+++++.. +.. .++++|++| +|+
T Consensus 78 ~H~~~DIp~~l~~~~~~~dsw~~~~~~~p~~~I~~~~pLG~~P~lie~la~rI~eal~~-g~~~~~~avvlvg----dp~ 152 (474)
T 2jh3_A 78 YVTETVLPRELGLGHQGPVPTGGVVRVLGGRRVRYTRPLGAHPGMADAIAAQARDTLPE-GTDPADVTLLLLA----ARP 152 (474)
T ss_dssp HHHHTHHHHHHTCCCCSCCCTTCEEEEETTEEEEECCCGGGSTTHHHHHHHHHHHHSCT-TCCGGGCEEEEEE----SST
T ss_pred HhHHHHHHHHHHHhhhccccchhhhhhcCCceEEEeCccCCCHHHHHHHHHHHHHHHhh-ccCcccceEEEec----Cch
Confidence 9999999999876543 467789999999999999999999999999876 322 346899999 888
Q ss_pred CCCcccc
Q 023828 268 GAGLANK 274 (276)
Q Consensus 268 ~~~~~~~ 274 (276)
+|+++.+
T Consensus 153 a~~~~~~ 159 (474)
T 2jh3_A 153 GNAALET 159 (474)
T ss_dssp TCHHHHH
T ss_pred HHHHHHH
Confidence 8776544
No 7
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=99.78 E-value=6.3e-19 Score=159.79 Aligned_cols=118 Identities=15% Similarity=0.213 Sum_probs=102.5
Q ss_pred CCCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccc
Q 023828 124 GDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQ 203 (276)
Q Consensus 124 ~~~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~ 203 (276)
.++.+|||++|||+++ ++..+..++.+++++. . .|++||+|. +|++++++++|.++|+++|+|+||||++|.|+++
T Consensus 135 ~~~~~lvl~gHGs~~~-~~~~~~~~a~~l~~~~-~-~v~~g~~e~-~P~~~~~l~~l~~~G~~~v~v~P~~l~aG~h~~~ 210 (264)
T 2xwp_A 135 RQTEKVVFMGHGASHH-AFAAYACLDHMMTAQR-F-PARVGAVES-YPEVDILIDSLRDEGVTGVHLMPLMLVAGDHAIN 210 (264)
T ss_dssp CTTEEEEEEECCCSSG-GGHHHHHHHHHHHHTT-C-SEEEEESSS-SSCHHHHHHHHHHHTCCEEEEEECSSCCCHHHHH
T ss_pred CCCCeEEEEECCCCch-hhHHHHHHHHHHHhhC-C-CEEEEEeCC-CCCHHHHHHHHHHCCCCEEEEEeeecccCcchhh
Confidence 4678999999999998 8889999999999885 3 799999995 9999999999999999999999999999999999
Q ss_pred cHHHH-----HHHHHhhCCCccEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 023828 204 DIPSL-----TAEAAKEHPGVPYIVTAPLGLHEQLVDVVNDRIKHCLS 246 (276)
Q Consensus 204 DIp~~-----l~~l~~~~p~v~I~va~PLG~~p~L~~lL~dRl~eAl~ 246 (276)
||+.. ...+.+...++. .+.+|||.+|.+++++.+|+++++.
T Consensus 211 Di~~~~~d~~~~~~~~~g~~~~-~~~~~LG~~p~i~~~~~~r~~ea~~ 257 (264)
T 2xwp_A 211 DMASDDGDSWKMRFNAAGIPAT-PWLSGLGENPAIRAMFVAHLHQALN 257 (264)
T ss_dssp HHHSSSTTSHHHHHHHTTCCEE-ECCCCGGGCHHHHHHHHHHHHHHHC
T ss_pred hccccchhHHHHHHHHcCCeEE-EeccCCCCCHHHHHHHHHHHHHHHh
Confidence 99975 233444434333 3579999999999999999999875
No 8
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=99.69 E-value=2e-17 Score=149.38 Aligned_cols=121 Identities=13% Similarity=0.191 Sum_probs=102.4
Q ss_pred CCCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccc
Q 023828 124 GDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQ 203 (276)
Q Consensus 124 ~~~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~ 203 (276)
..+.+|||++|||++ .++..+.+++++|+++. ..++++++| .+|++++++++|.++|+++|+|+|+|+++|.|+++
T Consensus 144 ~~~~~lll~~HGs~~-~~~~~~~~~a~~l~~~~--~~~~~g~~e-~~P~~~~~l~~l~~~G~~~v~v~P~~l~~G~h~~~ 219 (269)
T 2xvy_A 144 KPGEPVVFMGHGTPH-PADICYPGLQYYLWRLD--PDLLVGTVE-GSPSFDNVMAELDVRKAKRVWLMPLMAVAGDHARN 219 (269)
T ss_dssp CTTCCEEEEECCCSS-GGGGHHHHHHHHHHTTC--TTEEEEESS-SSSCHHHHHHHHHHHTCSEEEEEEESSSCCHHHHT
T ss_pred cCCceEEEEECCCCh-hhccHHHHHHHHHHhcC--CCEEEEEcC-CCCCHHHHHHHHHHCCCCEEEEECCccccccchhh
Confidence 356899999999998 77888899999997753 568899999 48999999999999999999999999999999999
Q ss_pred cHHHHH-HHHHhhCC--CccEE-EeCCCCCCHHHHHHHHHHHHHHHhhc
Q 023828 204 DIPSLT-AEAAKEHP--GVPYI-VTAPLGLHEQLVDVVNDRIKHCLSHA 248 (276)
Q Consensus 204 DIp~~l-~~l~~~~p--~v~I~-va~PLG~~p~L~~lL~dRl~eAl~~~ 248 (276)
||+..+ .++++.++ |.++. ++++||.+|.+++++.+|+++++..+
T Consensus 220 di~~~~~~~~~~~~~~~g~~~~~~~~~Lg~~p~~~~~l~~~~~~a~~~~ 268 (269)
T 2xvy_A 220 DMAGDEDDSWTSQLARRGIEAKPVLHGTAESDAVAAIWLRHLDDALARL 268 (269)
T ss_dssp TTTCSSTTSHHHHHHHTTCEEEECCCCGGGCHHHHHHHHHHHHHHHHTT
T ss_pred hcCCCchhHHHHHHHHcCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 988653 33444333 55655 88999999999999999999998653
No 9
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=99.59 E-value=2e-15 Score=140.39 Aligned_cols=130 Identities=10% Similarity=0.042 Sum_probs=103.2
Q ss_pred eCCCCCchhHH-HHHHHHHHHHHHcC--CccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccc----cccccH
Q 023828 133 DHGSRRRESNL-MLKQFVAMFREKTG--YLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGR----HWCQDI 205 (276)
Q Consensus 133 ~HGSr~pea~~-~l~~lA~~L~~r~~--~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~----H~~~DI 205 (276)
+|||+....+. ..+.+.+.|.++.+ ...|++| |+++.|++++++++|.++|+++|+|+|+|+..+. ++.+||
T Consensus 51 g~gSPl~~~t~~q~~~L~~~L~~~~~~~~~~V~~a-mry~~P~i~~~l~~l~~~G~~~ivvlPl~pq~s~st~g~~~~~i 129 (310)
T 2h1v_A 51 GGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIG-LAHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRA 129 (310)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEE-ESSSSSBHHHHHHHHHHTTCCEEEEEESSSSCCTTTHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHhcCCCCCceEeeh-hcCCCCCHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHH
Confidence 68887555543 36667777776653 4679999 6999999999999999999999999999974443 445677
Q ss_pred HHHHHHHHhhCCCccEEEeCCCCCCHHHHHHHHHHHHHHHhhcCC--CCCceeEEEecCCCCCc
Q 023828 206 PSLTAEAAKEHPGVPYIVTAPLGLHEQLVDVVNDRIKHCLSHAVG--DADECVVCAGTDRCRLY 267 (276)
Q Consensus 206 p~~l~~l~~~~p~v~I~va~PLG~~p~L~~lL~dRl~eAl~~~~~--~~~~~~vlvG~Gs~~~~ 267 (276)
++.++.. +++++++.++++.||.+++++.+++++++...+. +.++.+|+++||++..+
T Consensus 130 ~~~l~~~----~~~~i~~i~~~~~~p~~i~a~a~~i~~~l~~~~~~~~~~~~llfs~HG~P~~~ 189 (310)
T 2h1v_A 130 KEEAEKL----GGLTITSVESWYDEPKFVTYWVDRVKETYASMPEDERENAMLIVSAHSLPEKI 189 (310)
T ss_dssp HHHHHHH----CSCEEEECCCCTTCHHHHHHHHHHHHHHHHHSCHHHHTSEEEEEEEECCBGGG
T ss_pred HHHHHhC----CCCeEEEeCCCCCCHHHHHHHHHHHHHHHHhcccccCCCceEEEecCCCchhh
Confidence 7766544 3578999999999999999999999999987642 24578999999987654
No 10
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=99.53 E-value=4e-14 Score=134.58 Aligned_cols=131 Identities=9% Similarity=0.088 Sum_probs=106.0
Q ss_pred eCCCCCchhHH-HHHHHHHHHHHHc---CCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccc----ccccc
Q 023828 133 DHGSRRRESNL-MLKQFVAMFREKT---GYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGR----HWCQD 204 (276)
Q Consensus 133 ~HGSr~pea~~-~l~~lA~~L~~r~---~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~----H~~~D 204 (276)
+|||+...... ..+.+.+.|.++. ....|++| |+++.|++++++++|.++|+++|+|+|+|+..+. |+.+|
T Consensus 68 g~gSPL~~~t~~q~~~L~~~L~~~~~~~~~~~V~~a-mry~~P~i~d~l~~l~~~G~~~ivvlPlyPqyS~~ttgs~~~~ 146 (362)
T 1lbq_A 68 GGGSPIRKWSEYQATEVCKILDKTCPETAPHKPYVA-FRYAKPLTAETYKQMLKDGVKKAVAFSQYPHFSYSTTGSSINE 146 (362)
T ss_dssp TSSCSHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEE-ESSSSSCHHHHHHHHHTTTCCEEEEEESCSSCCTTTHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHhhcccCCCceEEee-cccCCCCHHHHHHHHHHcCCCeEEEEecchhccccchhHHHHH
Confidence 58998665543 3556666666543 24578999 7999999999999999999999999999996443 77889
Q ss_pred HHHHHHHHHhhCCCccEEEeCCCCCCHHHHHHHHHHHHHHHhhcCCC--CCceeEEEecCCCC
Q 023828 205 IPSLTAEAAKEHPGVPYIVTAPLGLHEQLVDVVNDRIKHCLSHAVGD--ADECVVCAGTDRCR 265 (276)
Q Consensus 205 Ip~~l~~l~~~~p~v~I~va~PLG~~p~L~~lL~dRl~eAl~~~~~~--~~~~~vlvG~Gs~~ 265 (276)
|++.+++++ .+|++++++.++++.||.+++++.++|++++...+.+ .+..+|+.+||.+.
T Consensus 147 i~~~l~~~~-~~~~i~i~~i~~~~~~p~~I~ala~~I~~~l~~~~~~~~~~~~llfSaHglP~ 208 (362)
T 1lbq_A 147 LWRQIKALD-SERSISWSVIDRWPTNEGLIKAFSENITKKLQEFPQPVRDKVVLLFSAHSLPM 208 (362)
T ss_dssp HHHHHHHHC-TTCCSEEEEECCCTTCHHHHHHHHHHHHHHHHTSCSTTGGGCEEEEEEECCBH
T ss_pred HHHHHHhcc-cCCCceEEEecCCCCCHHHHHHHHHHHHHHHHhcCcccCCCeEEEEecCCCcc
Confidence 999888773 5678899999999999999999999999999877543 23489999999543
No 11
>2jh3_A Ribosomal protein S2-related protein; CBIX, SAD phasing, structural genomics, chelatase super-family fold, 4Fe-4S iron-sulphur cluster; 1.9A {Deinococcus radiodurans}
Probab=99.50 E-value=6.4e-15 Score=144.49 Aligned_cols=115 Identities=21% Similarity=0.311 Sum_probs=103.1
Q ss_pred CCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCC-----------CHHHHHHHHHHcCCCeEEEEee
Q 023828 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEP-----------SIKDAFGSCVQQGANRVIVSPF 193 (276)
Q Consensus 125 ~~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~P-----------sL~eaLe~L~a~G~~~VvVVPL 193 (276)
.+.+|||++ ++.++..+.++++.|+++.+...|.+||++. .| ++++++++| |+++|+|+|+
T Consensus 141 ~~~avvlvg----dp~a~~~~~~la~~L~e~lg~~~v~vaf~s~-~Pwl~P~~~wleP~l~d~l~~L---G~krVvV~P~ 212 (474)
T 2jh3_A 141 ADVTLLLLA----ARPGNAALETHAQALRERGQFAGVEVVLESR-EALTPESHAASAVPLSEWPSRV---EAGQAVLVPF 212 (474)
T ss_dssp GGCEEEEEE----SSTTCHHHHHHHHHHHHHCCSSEEEEEECCC-C---------CCEEGGGGGGGC---CSSCEEEEEC
T ss_pred ccceEEEec----CchHHHHHHHHHHHHHHhcCCCcEEEEEEeC-CCCCCcccccccCCHHHHHHHc---CCCeEEEEEe
Confidence 356899999 7788899999999999999877899999997 77 999999987 9999999999
Q ss_pred cccccccccccHHHHHHHHHhhCC-CccEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 023828 194 FLFPGRHWCQDIPSLTAEAAKEHP-GVPYIVTAPLGLHEQLVDVVNDRIKHCLSH 247 (276)
Q Consensus 194 FL~~G~H~~~DIp~~l~~l~~~~p-~v~I~va~PLG~~p~L~~lL~dRl~eAl~~ 247 (276)
|+++|.|+.+||+..++.....+| |+++.++++||.+|.++++|.+|+++++..
T Consensus 213 Fl~dG~h~~~DI~~~~~~~~~~~p~G~~v~~~~~LG~~p~~~~ll~~rv~eal~~ 267 (474)
T 2jh3_A 213 LTHLGKHAAERLQQALAQAAERFPQAPPLHVGGPVGEHPAVAEVVLALAAEGRED 267 (474)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHCTTCCCEEECCCGGGSTTHHHHHHHHHHTTCSC
T ss_pred eccCCcchHHHHHHHHHHHHHhccCCcEEEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999998877777777 899999999999999999999999987643
No 12
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=99.25 E-value=3.2e-11 Score=111.97 Aligned_cols=121 Identities=13% Similarity=0.140 Sum_probs=101.6
Q ss_pred CCcEEEEEeCCCCCc------hhHHHHHHHHHHHHHHcCCccEEEEEeec-------CCCCHHHHHHHHHHc-CCCeEEE
Q 023828 125 DKDGVIIVDHGSRRR------ESNLMLKQFVAMFREKTGYLIVEPAHMEL-------AEPSIKDAFGSCVQQ-GANRVIV 190 (276)
Q Consensus 125 ~~~aLLLV~HGSr~p------ea~~~l~~lA~~L~~r~~~~~V~~AfLE~-------a~PsL~eaLe~L~a~-G~~~VvV 190 (276)
.+..||+.+||++.. ..+....+.++.|.++.+...+.+||... .+|++++++++|.++ |+++|+|
T Consensus 174 ~~~~llfs~HG~P~~~~~~gDpY~~~~~~t~~~l~e~l~~~~~~~~fqSrg~g~~~Wl~P~~~~~l~~l~~~~G~k~v~V 253 (310)
T 2h1v_A 174 ENAMLIVSAHSLPEKIKEFGDPYPDQLHESAKLIAEGAGVSEYAVGWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVY 253 (310)
T ss_dssp TSEEEEEEEECCBGGGGGGTCCHHHHHHHHHHHHHHHHTCSCEEEEEESCCCCSSCBSSCBHHHHHHHHHHHHCCSEEEE
T ss_pred CCceEEEecCCCchhhccCCCChHHHHHHHHHHHHHHcCCCCEEEEEEcCCCCCCCcCCCCHHHHHHHHHHHcCCceEEE
Confidence 468999999999753 25778899999999998876899999985 589999999999999 9999999
Q ss_pred Eee-cccccccccccHHHHHHHHHhhCCCccEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 023828 191 SPF-FLFPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVDVVNDRIKHCLS 246 (276)
Q Consensus 191 VPL-FL~~G~H~~~DIp~~l~~l~~~~p~v~I~va~PLG~~p~L~~lL~dRl~eAl~ 246 (276)
+|+ |+....++..||..+.++..... |+++.++++||.+|.++++|.+++.+.+.
T Consensus 254 ~P~~F~sD~lEtl~ei~~e~~e~~~~~-G~~~~~~p~ln~~p~~i~~l~~~v~~~l~ 309 (310)
T 2h1v_A 254 VPVGFVADHLEVLYDNDYECKVVTDDI-GASYYRPEMPNAKPEFIDALATVVLKKLG 309 (310)
T ss_dssp ECTTCCSSCHHHHTTTTTHHHHHHHHH-TCEEECCCCCTTCHHHHHHHHHHHHHHTT
T ss_pred ECCcccccceeeHHHHHHHHHHHHHHc-CCeEEECCCCCCCHHHHHHHHHHHHHHhc
Confidence 998 66666666778877766665443 47899999999999999999999998753
No 13
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=99.11 E-value=6.8e-10 Score=105.43 Aligned_cols=138 Identities=12% Similarity=0.061 Sum_probs=97.9
Q ss_pred CCCCchhH-HHHHHHHHHHHHHcC---CccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccccHHHHH-
Q 023828 135 GSRRRESN-LMLKQFVAMFREKTG---YLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLT- 209 (276)
Q Consensus 135 GSr~pea~-~~l~~lA~~L~~r~~---~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DIp~~l- 209 (276)
||+-.... ..-+.+.+.|.+..+ ...|++| |.|+.|++++++++|.++|+++|+++|+|+..+..+...+-+.+
T Consensus 65 gSPL~~~t~~Q~~~L~~~L~~~~~~~~~~~V~~a-mry~~P~i~~~l~~l~~~G~~~ivvlPlyPqyS~~Ttgs~~~~~~ 143 (359)
T 3hcn_A 65 GSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIG-FRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIY 143 (359)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHCGGGCSEEEEEE-ESSSSSBHHHHHHHHHHTTCSEEEEEESCSSCCTTTHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHhhhcccccCceEEEE-EeeCCCCHHHHHHHHHhcCCCeEEEEECCccccccchhhHHHHHH
Confidence 56543332 223445555554432 2478888 58999999999999999999999999999977755443333333
Q ss_pred HHHHh--hCCCccEEEeCCCCCCHHHHHHHHHHHHHHHhhcCCC--CCceeEEEecCCCCCc-CCCccc
Q 023828 210 AEAAK--EHPGVPYIVTAPLGLHEQLVDVVNDRIKHCLSHAVGD--ADECVVCAGTDRCRLY-GAGLAN 273 (276)
Q Consensus 210 ~~l~~--~~p~v~I~va~PLG~~p~L~~lL~dRl~eAl~~~~~~--~~~~~vlvG~Gs~~~~-~~~~~~ 273 (276)
+.+++ ..+++++++.+++..||.+++++.++|++++...+.+ .+..+|+..||-+.-+ ..||-|
T Consensus 144 ~~~~~~~~~~~~~~~~i~~~~~~p~yI~a~a~~I~~~l~~~~~~~~~~~~LlfSaHgiP~~~~~~GDpY 212 (359)
T 3hcn_A 144 RYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPY 212 (359)
T ss_dssp HHHHHTTCCCSSEEEEECCCTTCHHHHHHHHHHHHHHHTTSCTTTGGGCEEEEEEECCBHHHHTTTCSH
T ss_pred HHHHHhccCCCCceEEeCCccCCHHHHHHHHHHHHHHHHhCCccccCCcEEEEEcCCChHhhcccCCCH
Confidence 23332 2456789999999999999999999999999887543 2357999999975433 234444
No 14
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=98.35 E-value=4.8e-07 Score=85.89 Aligned_cols=117 Identities=10% Similarity=0.067 Sum_probs=88.1
Q ss_pred CcEEEEEeCCCCCch------hHHHHHHHHHHHHHHcCCc-cEEEEEeecC------CCCHHHHHHHHHHcCCCeEEEEe
Q 023828 126 KDGVIIVDHGSRRRE------SNLMLKQFVAMFREKTGYL-IVEPAHMELA------EPSIKDAFGSCVQQGANRVIVSP 192 (276)
Q Consensus 126 ~~aLLLV~HGSr~pe------a~~~l~~lA~~L~~r~~~~-~V~~AfLE~a------~PsL~eaLe~L~a~G~~~VvVVP 192 (276)
+..||+.+||.+... .+....+.++.|.++.+.. .+.++|-... +|+++++|++| ++|+++|+|+|
T Consensus 196 ~~~llfSaHglP~~~~~~GDpY~~q~~~ta~ll~e~lg~~~~~~~~fQSr~G~~~WL~P~t~~~l~~L-~~G~k~vvVvP 274 (362)
T 1lbq_A 196 KVVLLFSAHSLPMDVVNTGDAYPAEVAATVYNIMQKLKFKNPYRLVWQSQVGPKPWLGAQTAEIAEFL-GPKVDGLMFIP 274 (362)
T ss_dssp GCEEEEEEECCBHHHHTTTCSHHHHHHHHHHHHHHHTTTCSCEEEEEECCCSSSCBCSCBHHHHHHHH-GGGCSCEEEEC
T ss_pred CeEEEEecCCCccccccCCCcHHHHHHHHHHHHHHHcCCCCCEEEEEECCCCCcccCCCCHHHHHHHH-HcCCCeEEEEC
Confidence 459999999965321 5567888999999998753 4889998843 69999999999 99999999999
Q ss_pred ecccccccccccHHHH---HHHHHhhCCCccEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 023828 193 FFLFPGRHWCQDIPSL---TAEAAKEHPGVPYIVTAPLGLHEQLVDVVNDRIKHCLSH 247 (276)
Q Consensus 193 LFL~~G~H~~~DIp~~---l~~l~~~~p~v~I~va~PLG~~p~L~~lL~dRl~eAl~~ 247 (276)
.. |.+.|... +.++ .++.. ...|. +.+.+.|+.+|.++++|.+++.+.+..
T Consensus 275 ~g-FvsD~lET-L~eid~e~~e~~-~~~G~-~~~~p~Ln~~p~fi~~L~~lv~~~l~~ 328 (362)
T 1lbq_A 275 IA-FTSDHIET-LHEIDLGVIGES-EYKDK-FKRCESLNGNQTFIEGMADLVKSHLQS 328 (362)
T ss_dssp TT-CSSCCHHH-HTCCCCCCCTTC-TTGGG-EEECCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred Ce-echhhHhh-HHHHHHHHHHHH-HhCCC-EEEcCCCCCCHHHHHHHHHHHHHHhcc
Confidence 74 44555431 2111 11111 12344 899999999999999999999998875
No 15
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=98.34 E-value=6e-06 Score=78.30 Aligned_cols=121 Identities=12% Similarity=0.127 Sum_probs=90.2
Q ss_pred CCcEEEEEeCCCCCc------hhHHHHHHHHHHHHHHcCCc-cEEEEEeec-C-----CCCHHHHHHHHHHcCCCeEEEE
Q 023828 125 DKDGVIIVDHGSRRR------ESNLMLKQFVAMFREKTGYL-IVEPAHMEL-A-----EPSIKDAFGSCVQQGANRVIVS 191 (276)
Q Consensus 125 ~~~aLLLV~HGSr~p------ea~~~l~~lA~~L~~r~~~~-~V~~AfLE~-a-----~PsL~eaLe~L~a~G~~~VvVV 191 (276)
.+..||+.+||-+.. .......+.++.|.++.+.. .+.++|-.. + +|++++.|++|.++|+++|+|+
T Consensus 190 ~~~~LlfSaHgiP~~~~~~GDpY~~q~~~t~~lv~e~Lg~~~~~~l~~QSr~G~~~WL~P~t~d~l~~L~~~G~k~vvv~ 269 (359)
T 3hcn_A 190 SEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLV 269 (359)
T ss_dssp GGCEEEEEEECCBHHHHTTTCSHHHHHHHHHHHHHHHTTTCSCEEEEEECCSCSSCBSSSBHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEcCCChHhhcccCCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Confidence 345899999998532 24566888888898888643 478888652 2 5999999999999999999999
Q ss_pred eeccccccccc--ccHHHHH-HHHHhhCCCc-cEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 023828 192 PFFLFPGRHWC--QDIPSLT-AEAAKEHPGV-PYIVTAPLGLHEQLVDVVNDRIKHCLSH 247 (276)
Q Consensus 192 PLFL~~G~H~~--~DIp~~l-~~l~~~~p~v-~I~va~PLG~~p~L~~lL~dRl~eAl~~ 247 (276)
|..++ +.|.. .||-.+. ++...+ .|. .+...+.|+.+|.+++.|.+.+.+.+..
T Consensus 270 P~gFv-sD~lETL~Eid~E~~~e~a~e-~G~~~~~rip~LNd~p~fi~~La~lv~~~l~~ 327 (359)
T 3hcn_A 270 PIAFT-SDHIETLYELDIEYSQVLAKE-CGVENIRRAESLNGNPLFSKALADLVHSHIQS 327 (359)
T ss_dssp CTTCC-SCCCCCHHHHCHHHHHHHHHH-TCCCEEEECCCSTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccc-hhhHHhHHHHHHHHHHHHHHh-CCCceEEEcCCCCCCHHHHHHHHHHHHHHHhc
Confidence 97543 36653 3443333 233333 345 6999999999999999999999998875
No 16
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=43.18 E-value=1.3e+02 Score=24.84 Aligned_cols=64 Identities=14% Similarity=0.160 Sum_probs=37.5
Q ss_pred cEEEEEeCCCCC----chhH--HHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEE-eecc
Q 023828 127 DGVIIVDHGSRR----RESN--LMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVS-PFFL 195 (276)
Q Consensus 127 ~aLLLV~HGSr~----pea~--~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVV-PLFL 195 (276)
.+-|||.-||++ +.++ ...+.+++.+++. ...|.+-.+. ..+.+.+..+++.+ ++.|+++ |++.
T Consensus 12 ~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~--g~~v~~~dL~-~~~d~~~~~~~l~~--AD~iV~~~P~y~ 82 (204)
T 2amj_A 12 SSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDL--GHDVRIVRAD-SDYDVKAEVQNFLW--ADVVIWQMPGWW 82 (204)
T ss_dssp CCEEEEEECCC------CHHHHHHHHHHHHHHHHT--TCEEEEEESS-SCCCHHHHHHHHHH--CSEEEEEEECBT
T ss_pred CcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHc--CCEEEEEeCC-ccccHHHHHHHHHh--CCEEEEECCccc
Confidence 344566667766 2232 2355556666654 3457776665 34668888888876 6665544 8776
No 17
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=40.17 E-value=65 Score=27.22 Aligned_cols=68 Identities=10% Similarity=0.042 Sum_probs=41.9
Q ss_pred CCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCC-CHHHHHHHHHHcCCCeEEEEeec
Q 023828 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEP-SIKDAFGSCVQQGANRVIVSPFF 194 (276)
Q Consensus 125 ~~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~P-sL~eaLe~L~a~G~~~VvVVPLF 194 (276)
++..|.+|.+...++-....+..+.+.+++. + +.+.+.+.....+ .-.+.++.+.+.+++-|++.|..
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~-g-~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 71 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQAL-N-VTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAID 71 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHHH-T-CEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSS
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHHc-C-CEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 4566788888887777777777777777764 3 3344422211111 13456777788889888887753
No 18
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=37.82 E-value=1.7e+02 Score=23.97 Aligned_cols=37 Identities=30% Similarity=0.370 Sum_probs=24.3
Q ss_pred EEEeCCCCCch---hHHHHHHHHHHHHHHcCCccEEEEEe
Q 023828 130 IIVDHGSRRRE---SNLMLKQFVAMFREKTGYLIVEPAHM 166 (276)
Q Consensus 130 LLV~HGSr~pe---a~~~l~~lA~~L~~r~~~~~V~~AfL 166 (276)
||+..||++.+ .....+.+++.+++..+...|.+--+
T Consensus 4 iLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL 43 (212)
T 3r6w_A 4 ILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREV 43 (212)
T ss_dssp EEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 45566776652 33557788888888866556666544
No 19
>3mtq_A Putative phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) permease...; PTS system fructose IIA component; 1.70A {Klebsiella pneumoniae subsp}
Probab=36.75 E-value=1.7e+02 Score=23.82 Aligned_cols=55 Identities=22% Similarity=0.148 Sum_probs=32.5
Q ss_pred CCCCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCC-CHHHHHHHHHHc
Q 023828 123 VGDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEP-SIKDAFGSCVQQ 183 (276)
Q Consensus 123 ~~~~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~P-sL~eaLe~L~a~ 183 (276)
.....+|||++||. ....+...++++-...+. ...+++.. ..+ .+.+.+++..++
T Consensus 18 ~~~~~~iII~sHG~----~A~gl~~s~~~i~G~~~~-v~av~~~~-~~~~~~~~~~~~~i~~ 73 (159)
T 3mtq_A 18 QGMKRHYIFASHGS----FANGLLNSVELILGKQPD-IHTLCAYV-EEEVDLTQQVEALVAR 73 (159)
T ss_dssp SSCCEEEEEEEETT----HHHHHHHHHHHHHCCCTT-EEEEEETS-CSSSCHHHHHHHHHHT
T ss_pred hccCceEEEEeCcH----HHHHHHHHHHHHcCCCCC-eEEEECCC-CCHHHHHHHHHHHHHh
Confidence 34678999999996 345566667776644332 12334322 234 577767666553
No 20
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=36.35 E-value=26 Score=27.58 Aligned_cols=64 Identities=6% Similarity=0.064 Sum_probs=44.9
Q ss_pred chhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHH--HHHHHHHHcCCCeEEEEeeccccccccc
Q 023828 139 RESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIK--DAFGSCVQQGANRVIVSPFFLFPGRHWC 202 (276)
Q Consensus 139 pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~--eaLe~L~a~G~~~VvVVPLFL~~G~H~~ 202 (276)
|.+...++.|...|+.++|......-|+++..|.-. +.-+++..+=.++=...|+-+..|.-+.
T Consensus 26 PSSkeTyEWLqAal~RKyp~~~f~~~YIDI~~~~~~l~d~~~~~ae~I~ede~FYPlV~indeiVa 91 (111)
T 1xg8_A 26 PTSKDIYDWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYPLITMNDEYVA 91 (111)
T ss_dssp CCHHHHHHHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSSEEEETTEEEE
T ss_pred CCchhHHHHHHHHHhCcCCCCceEEEEEeccCCccchhHHHHHHHHHHhhccccceEEEECCEEee
Confidence 677889999999999999988999999998877544 4344443322334467788876665543
No 21
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8
Probab=33.46 E-value=1.9e+02 Score=25.16 Aligned_cols=113 Identities=12% Similarity=-0.023 Sum_probs=63.6
Q ss_pred HHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCC-CeEEEEeeccc-cc-ccccccHHHHHHHHHhhCCCccEE-E
Q 023828 148 FVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGA-NRVIVSPFFLF-PG-RHWCQDIPSLTAEAAKEHPGVPYI-V 223 (276)
Q Consensus 148 lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~-~~VvVVPLFL~-~G-~H~~~DIp~~l~~l~~~~p~v~I~-v 223 (276)
.|+.|.+..... -.+|.. ..-++....+.|..... +.+.++|+.=. .| .+...+.......+.+++.+-... .
T Consensus 50 aA~~L~~~l~~~-~vIGv~--wG~Tl~~v~~~l~~~~~~~~~~~V~l~Gg~~~~~~~~~~~n~i~~~lA~~~~~~~~~l~ 126 (266)
T 3efb_A 50 GAQLLDRLLEPG-DIVGFS--WGRAVSALVENLPQAGQSRQLICVPIIGGPSGKLESRYHVNTLTYSAAAKLKGESHLAD 126 (266)
T ss_dssp HHHHHHHHCCTT-CEEEEC--CSHHHHHHHHTCCCCSSCCCCEEEESBCBCTTSSCGGGCHHHHHHHHHHHTTCEECCCC
T ss_pred HHHHHHHhCCCC-CEEEEc--ccHHHHHHHHhcCccCCCCCeEEEEcCCCCCCCCccccCHHHHHHHHHHHhCCeEEEEe
Confidence 344555555322 234432 23457777777743332 36888998754 33 344555556666666665432222 3
Q ss_pred eCCCCCCHHHHHHHH--HHHHHHHhhcCCCCCceeEEEecCCCCC
Q 023828 224 TAPLGLHEQLVDVVN--DRIKHCLSHAVGDADECVVCAGTDRCRL 266 (276)
Q Consensus 224 a~PLG~~p~L~~lL~--dRl~eAl~~~~~~~~~~~vlvG~Gs~~~ 266 (276)
+|-+-.++++.+.+. ..+++.+..... -=+.++|-|+..+
T Consensus 127 aP~~~~~~~~~~~l~~~~~i~~vl~~~~~---aDiai~GIG~~~~ 168 (266)
T 3efb_A 127 FPALLDNPLIRNGIMQSQHFKTISAYWDN---LDIALVGIGSPAI 168 (266)
T ss_dssp SBSBCSSHHHHHHHHTSHHHHHHHHHHHT---CSEEEECCBCCC-
T ss_pred CCeecCCHHHHHHHHhChHHHHHHHHHhc---CCEEEEecCCCCC
Confidence 444556678878776 556666654321 1278889998754
No 22
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=28.08 E-value=1.8e+02 Score=24.02 Aligned_cols=65 Identities=9% Similarity=-0.000 Sum_probs=37.5
Q ss_pred cEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEee
Q 023828 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (276)
Q Consensus 127 ~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPL 193 (276)
..|-++..+..++-....+..+.+.+++. + +.+.+...+.....-.+.++.+.+.+++-|++.|.
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-g-~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 70 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERL-G-GTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLG 70 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHT-T-CEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESS
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHc-C-CEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 34556666665655555566666666653 3 34444433211111356677788888888888776
No 23
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=28.06 E-value=1.8e+02 Score=24.14 Aligned_cols=65 Identities=9% Similarity=0.055 Sum_probs=39.9
Q ss_pred cEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEee
Q 023828 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (276)
Q Consensus 127 ~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPL 193 (276)
..|-++.....++-....+..+.+.+++. + +.+.+...+.......+.++.+.+.+++-|++.|.
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-g-~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (293)
T 3l6u_A 9 NIVGFTIVNDKHEFAQRLINAFKAEAKAN-K-YEALVATSQNSRISEREQILEFVHLKVDAIFITTL 73 (293)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHT-T-CEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred cEEEEEEecCCcHHHHHHHHHHHHHHHHc-C-CEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 45566666666666666666666666654 4 34555443321112346778888889999998875
No 24
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=27.35 E-value=1e+02 Score=24.47 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=19.5
Q ss_pred CCcEEEEEeCCCCCchhHHHHHHHHHHHHHH
Q 023828 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFREK 155 (276)
Q Consensus 125 ~~~aLLLV~HGSr~pea~~~l~~lA~~L~~r 155 (276)
.+.++||++||..- ...+...++++-..
T Consensus 3 ~~igiiIvtHG~s~---A~~l~~~a~~i~G~ 30 (139)
T 3gdw_A 3 ANVGVFVLMHGDST---ASSMLKTAQELLGT 30 (139)
T ss_dssp CCCEEEEEEESSSH---HHHHHHHHHHHHTC
T ss_pred CceeEEEEcCCHHH---HHHHHHHHHHHcCc
Confidence 46799999999843 34466667776644
No 25
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=27.17 E-value=1.6e+02 Score=24.94 Aligned_cols=67 Identities=13% Similarity=0.070 Sum_probs=38.7
Q ss_pred CcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeec
Q 023828 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF 194 (276)
Q Consensus 126 ~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLF 194 (276)
+..|-++.....++-+...+..+.+.+++. + +.+.+...+.....-.+.++.+.+++++-|++.|.-
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-g-~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~ 69 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEA-G-YKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASID 69 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHT-T-CEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSS
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHc-C-CEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 344555666666666666666666666653 3 345554432111112456777778888888887753
No 26
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=26.99 E-value=56 Score=30.67 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=21.5
Q ss_pred HHHHHHHHHHcCCCeEEEEeeccccc
Q 023828 173 IKDAFGSCVQQGANRVIVSPFFLFPG 198 (276)
Q Consensus 173 L~eaLe~L~a~G~~~VvVVPLFL~~G 198 (276)
+.+-|+-|++.|++.|.+.|+|-+++
T Consensus 34 i~~kLdYLk~LGvt~I~L~Pi~~~~~ 59 (549)
T 4aie_A 34 IISRLDYLEKLGIDAIWLSPVYQSPG 59 (549)
T ss_dssp HHTTHHHHHHHTCSEEEECCCEECCC
T ss_pred HHHhhHHHHHCCCCEEEeCCCcCCCC
Confidence 44556778899999999999998876
No 27
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=24.82 E-value=2e+02 Score=24.25 Aligned_cols=64 Identities=13% Similarity=0.109 Sum_probs=33.1
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEee
Q 023828 128 GVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (276)
Q Consensus 128 aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPL 193 (276)
.|-++.....++-+...+..+.+.+++. + +.+.+...+.....-.+.++.+.+++++-|++.|.
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~-g-~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 67 (313)
T 3m9w_A 4 KIGMAIDDLRLERWQKDRDIFVKKAESL-G-AKVFVQSANGNEETQMSQIENMINRGVDVLVIIPY 67 (313)
T ss_dssp EEEEEESCCSSSTTHHHHHHHHHHHHHT-S-CEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHc-C-CEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3444445445555555555665555553 3 33444333211111235566677777777777765
No 28
>3nze_A Putative transcriptional regulator, sugar-binding; structural genomics, PSI-2, protein structure initiative; 1.70A {Arthrobacter aurescens} SCOP: c.124.1.0
Probab=24.26 E-value=2.7e+02 Score=24.23 Aligned_cols=132 Identities=5% Similarity=-0.112 Sum_probs=69.3
Q ss_pred EEEEEeCCCCCch-hHHHHHHHH-HHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccc-ccc-c
Q 023828 128 GVIIVDHGSRRRE-SNLMLKQFV-AMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGR-HWC-Q 203 (276)
Q Consensus 128 aLLLV~HGSr~pe-a~~~l~~lA-~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~-H~~-~ 203 (276)
.+++...+..+.+ ....+.+.+ +.|.+..... -.+|.. ..-++....+.|.....+.+.|||+.=.-|. +.. .
T Consensus 24 ~~vV~~~~~~~~~~~~~~lg~~aA~~L~~~l~~~-~viGv~--wG~T~~~v~~~l~~~~~~~~~vV~l~Gg~~~~~~~~~ 100 (267)
T 3nze_A 24 VHVVPVLDTLNEAETLDRVAMQAARTIGPLVDSN-AIIGVA--WGATLSAVSRHLTRKMTHDSIVVQLNGAGNMQTTGIT 100 (267)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHGGGCCSS-CEEEEC--CSHHHHHHHHTCCCCCCSSCEEEECSCCCCTTSCSHH
T ss_pred EEEEeCCCCCChHHHHHHHHHHHHHHHHHhCCCC-CEEEEC--CCHHHHHHHHhcCccCCCCCEEEECCCCCCCCccccc
Confidence 4445444443322 233444433 4455544322 234432 2235777777775555678999998654332 211 1
Q ss_pred cHHHHHHHHHhhCCCccEEEeCCCCC-CHHHHHHHH--HHHHHHHhhcCCCCCceeEEEecCCCC
Q 023828 204 DIPSLTAEAAKEHPGVPYIVTAPLGL-HEQLVDVVN--DRIKHCLSHAVGDADECVVCAGTDRCR 265 (276)
Q Consensus 204 DIp~~l~~l~~~~p~v~I~va~PLG~-~p~L~~lL~--dRl~eAl~~~~~~~~~~~vlvG~Gs~~ 265 (276)
........+.+++.+-...+--|.+. +++..+.+. ..+++.+..... . =+.++|-|+..
T Consensus 101 ~~n~i~~~lA~~~~~~~~~l~~P~~~~s~~~~~~l~~~~~i~~~l~~~~~-~--Diai~GIG~~~ 162 (267)
T 3nze_A 101 YASDIMRRFGSAYGARVEQFPVPAFFDHASTKTAMWNERSVQRILDLQAR-M--SIAIFGVGSVD 162 (267)
T ss_dssp HHHHHHHHHHHHHTCEEECCCSCSSCSSHHHHHHHTTCHHHHHHHHHHHT-C--SEEEECCEECC
T ss_pred cHHHHHHHHHHHhCCeEEEeeCCEEcCCHHHHHHHHhChHHHHHHHHHhc-C--CEEEEecCCCC
Confidence 11234455555544333344456554 788888776 556666654321 1 27788888776
No 29
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=24.11 E-value=2.3e+02 Score=23.03 Aligned_cols=65 Identities=11% Similarity=0.010 Sum_probs=38.6
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeec
Q 023828 128 GVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF 194 (276)
Q Consensus 128 aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLF 194 (276)
.|-++.....++-....+..+.+.+++. + +.+.+...+.......+.++.+.+.+++-|++.|..
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~-g-~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 4 TLGFILPDLENPSYARIAKQLEQGARAR-G-YQLLIASSDDQPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHT-T-CEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred EEEEEeCCCcChhHHHHHHHHHHHHHHC-C-CEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 3455555555666666666666666654 4 345554333211113456777888889998888764
No 30
>3bed_A PTS system, IIA component; mannose/sorbose, phosphotransferase system, structural genom APC28805, PSI-2, protein structure initiative; HET: MSE MLY; 1.45A {Enterococcus faecalis} SCOP: c.54.1.1
Probab=23.80 E-value=95 Score=24.46 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=18.2
Q ss_pred CcEEEEEeCCCCCchhHHHHHHHHHHHHHH
Q 023828 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREK 155 (276)
Q Consensus 126 ~~aLLLV~HGSr~pea~~~l~~lA~~L~~r 155 (276)
..++||++||. ....+...++++-..
T Consensus 5 ~i~iiivsHG~----~A~gl~~~~~~i~G~ 30 (142)
T 3bed_A 5 XPKLILMSHGR----MAEETLASTQMIVGE 30 (142)
T ss_dssp CSEEEEEEETT----HHHHHHHHHHHHHCT
T ss_pred cccEEEEcChH----HHHHHHHHHHHHcCC
Confidence 36899999994 345566777777543
No 31
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=23.58 E-value=2.1e+02 Score=23.54 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=40.5
Q ss_pred CcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecc
Q 023828 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFL 195 (276)
Q Consensus 126 ~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL 195 (276)
...|-++.....++-....+..+.+.+++. + +.+.+...+.......+.++.+.+.+++-|++.|...
T Consensus 7 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-g-~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 74 (276)
T 3jy6_A 7 SKLIAVIVANIDDYFSTELFKGISSILESR-G-YIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN 74 (276)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHTT-T-CEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHHHC-C-CEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 345556665555665666666666666654 3 3455544332111124567788888999999988643
No 32
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=22.99 E-value=1.7e+02 Score=22.82 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=14.5
Q ss_pred EEEeCCCCCchhHHHHHHHHHHHHHHc
Q 023828 130 IIVDHGSRRRESNLMLKQFVAMFREKT 156 (276)
Q Consensus 130 LLV~HGSr~pea~~~l~~lA~~L~~r~ 156 (276)
+|+..||++..++ -.++++.+.+..
T Consensus 6 ilii~~S~r~~g~--t~~la~~~~~~~ 30 (184)
T 1rli_A 6 IAVINGGTRSGGN--TDVLAEKAVQGF 30 (184)
T ss_dssp EEEEESSCSSCCH--HHHHHHHHHTTT
T ss_pred EEEEECCCCCCcc--HHHHHHHHHcCC
Confidence 5666678665444 345666665544
No 33
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=22.95 E-value=2.4e+02 Score=23.27 Aligned_cols=66 Identities=9% Similarity=0.074 Sum_probs=42.3
Q ss_pred cEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeec
Q 023828 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF 194 (276)
Q Consensus 127 ~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLF 194 (276)
..|-++.....++-....+..+.+.+++. + +.+.+...+.....-.+.++.+.+.+++-|++.|..
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-g-~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 81 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQ-G-YSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTK 81 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHT-T-CEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSS
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHC-C-CEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeccc
Confidence 45666666666776767777777777664 4 345554433111113467788888899999998864
No 34
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=22.46 E-value=2.5e+02 Score=23.32 Aligned_cols=67 Identities=15% Similarity=0.069 Sum_probs=40.3
Q ss_pred CcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeec
Q 023828 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF 194 (276)
Q Consensus 126 ~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLF 194 (276)
...|-++.....++-....+..+.+.+++. + +.+.+...........+.++.+.+.+++-|++.|..
T Consensus 8 ~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~-g-~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (291)
T 3egc_A 8 SNVVGLIVSDIENVFFAEVASGVESEARHK-G-YSVLLANTAEDIVREREAVGQFFERRVDGLILAPSE 74 (291)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHT-T-CEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCS
T ss_pred CcEEEEEECCCcchHHHHHHHHHHHHHHHC-C-CEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 345556666655665666666666666653 4 345554433211113457778888899999988864
No 35
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=22.29 E-value=2.5e+02 Score=23.30 Aligned_cols=65 Identities=9% Similarity=0.082 Sum_probs=39.4
Q ss_pred CcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCcc-EEEEEeecCCCCHHHHHHHHHHcCCCeEEEEe
Q 023828 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLI-VEPAHMELAEPSIKDAFGSCVQQGANRVIVSP 192 (276)
Q Consensus 126 ~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~-V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVP 192 (276)
...|-++.....++-....+..+.+.+++. + +. +.++..+.....-.+.++.+.+.+++-|++.|
T Consensus 10 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-g-~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 10 SKMIGIIIPDLNNRFYAQIIDGIQEVIQKE-G-YTALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHT-T-CEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCEEEEEeCCCCChhHHHHHHHHHHHHHHC-C-CCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 345666666666666666666666666654 4 34 44443321111134567888889999999987
No 36
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=22.24 E-value=89 Score=29.09 Aligned_cols=26 Identities=12% Similarity=0.341 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCCCeEEEEeeccccc
Q 023828 173 IKDAFGSCVQQGANRVIVSPFFLFPG 198 (276)
Q Consensus 173 L~eaLe~L~a~G~~~VvVVPLFL~~G 198 (276)
+.+.|+.|++.|++.|.+.|+|-.+.
T Consensus 52 i~~~LdyL~~LGv~~I~l~Pi~~~~~ 77 (475)
T 2z1k_A 52 VAEKLPYLLDLGVEAIYLNPVFASTA 77 (475)
T ss_dssp HHHTHHHHHHHTCCEEEECCCEEESS
T ss_pred HHHHhHHHHHcCCCEEEECCCcCCCC
Confidence 55667788889999999999987654
No 37
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=22.16 E-value=84 Score=30.84 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=23.2
Q ss_pred HHHHHHHHHHcCCCeEEEEeeccccccc
Q 023828 173 IKDAFGSCVQQGANRVIVSPFFLFPGRH 200 (276)
Q Consensus 173 L~eaLe~L~a~G~~~VvVVPLFL~~G~H 200 (276)
|.+-|+-|++.|++.|.+.|+|-.++.|
T Consensus 241 i~~kLdYLk~LGvt~I~L~Pif~s~~~~ 268 (645)
T 4aef_A 241 IKEKIDHLVNLGINAIYLTPIFSSLTYH 268 (645)
T ss_dssp HHHTHHHHHHHTCCEEEECCCEEESSTT
T ss_pred HHHhhHHHHHcCCCEEEECCCCCCCCCC
Confidence 5566778899999999999999877655
No 38
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=21.44 E-value=2.9e+02 Score=21.47 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=19.6
Q ss_pred CCcEEEEEeCCCCCchhHHHHHHHHHHHHHH
Q 023828 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFREK 155 (276)
Q Consensus 125 ~~~aLLLV~HGSr~pea~~~l~~lA~~L~~r 155 (276)
.+.++||++||..- ...+...++++-..
T Consensus 3 ~~igiiivsHG~~~---A~~l~~~a~~i~G~ 30 (130)
T 3gx1_A 3 AQVEVIVMMHGRST---ATSMVETVQELLSI 30 (130)
T ss_dssp SSCEEEEEEESSSH---HHHHHHHHHHHHTC
T ss_pred CceEEEEEcCCHHH---HHHHHHHHHHHcCc
Confidence 45789999999843 34466667776654
No 39
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=21.43 E-value=2.1e+02 Score=23.54 Aligned_cols=63 Identities=8% Similarity=0.006 Sum_probs=39.2
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEe
Q 023828 128 GVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSP 192 (276)
Q Consensus 128 aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVP 192 (276)
.|-++.....++-....+..+.+.+++. + +.+.+...+.....-.+.++.+.+.+++-|++.|
T Consensus 10 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-g-~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~ 72 (277)
T 3e61_A 10 LIGLLLPDMSNPFFTLIARGVEDVALAH-G-YQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTA 72 (277)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHHHHHT-T-CCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECG
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHC-C-CEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 4555555555666666677777777664 4 3455544332111134677888888999999988
No 40
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=21.38 E-value=3e+02 Score=21.63 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=22.8
Q ss_pred EEEeCCCCCc-hhH--HHHHHHHHHHHHHcCCccEEEEEe
Q 023828 130 IIVDHGSRRR-ESN--LMLKQFVAMFREKTGYLIVEPAHM 166 (276)
Q Consensus 130 LLV~HGSr~p-ea~--~~l~~lA~~L~~r~~~~~V~~AfL 166 (276)
+|+..||+++ .++ ...+.+++.+++..+...|.+--+
T Consensus 4 ilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl 43 (201)
T 1t5b_A 4 VLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDL 43 (201)
T ss_dssp EEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEET
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 5666788774 233 446777788887754445665444
No 41
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=21.01 E-value=88 Score=30.35 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=23.0
Q ss_pred HHHHHHHHHHcCCCeEEEEeeccccccc
Q 023828 173 IKDAFGSCVQQGANRVIVSPFFLFPGRH 200 (276)
Q Consensus 173 L~eaLe~L~a~G~~~VvVVPLFL~~G~H 200 (276)
+.+.|+.|++.|++.|.+.|+|-.+..|
T Consensus 174 i~~~LdyLk~LGvt~I~L~Pi~~~~~~~ 201 (583)
T 1ea9_C 174 VIDHLDHLSKLGVNAVYFTPLFKATTNH 201 (583)
T ss_dssp HHHTHHHHHHHTCSEEEECCCSSCSSSS
T ss_pred HHHhhHHHHHcCCCEEEECCCccCCCCC
Confidence 5566788899999999999999876543
No 42
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=20.97 E-value=3.2e+02 Score=21.84 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=23.5
Q ss_pred EEEeCCCCCc--hhH--HHHHHHHHHHHHHcCCccEEEEEe
Q 023828 130 IIVDHGSRRR--ESN--LMLKQFVAMFREKTGYLIVEPAHM 166 (276)
Q Consensus 130 LLV~HGSr~p--ea~--~~l~~lA~~L~~r~~~~~V~~AfL 166 (276)
||+..||+++ .++ ...+.+++.+++..+...|.+-.+
T Consensus 4 ilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL 44 (208)
T 2hpv_A 4 LLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDV 44 (208)
T ss_dssp EEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEET
T ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeC
Confidence 5666678774 333 446778888888765455665544
No 43
>2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein, BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics, PSI-2; 1.72A {Homo sapiens}
Probab=20.91 E-value=1e+02 Score=23.73 Aligned_cols=64 Identities=5% Similarity=-0.004 Sum_probs=31.7
Q ss_pred EEEEEeCCCCCch--hHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHc-CC-CeEEEE
Q 023828 128 GVIIVDHGSRRRE--SNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQ-GA-NRVIVS 191 (276)
Q Consensus 128 aLLLV~HGSr~pe--a~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~-G~-~~VvVV 191 (276)
..||+.||..... .......+++.|.++.++..+.+-+-....+++.+.++.+.+. +. ++++++
T Consensus 5 p~vv~lHG~~~~~~~~~~~~~~~~~~l~~~~g~~vi~~d~~g~~~~~~~~~~~~~~~~l~~~~~~~lv 72 (194)
T 2qs9_A 5 SKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPITARESIWLPFMETELHCDEKTIII 72 (194)
T ss_dssp CEEEEECCSSSSCTTTSTTHHHHHHHHTTSTTCCEEECCCSSTTTCCHHHHHHHHHHTSCCCTTEEEE
T ss_pred CEEEEECCCCCCCcccchHHHHHHHHHhhccCceEEEeeCCCCCcccHHHHHHHHHHHhCcCCCEEEE
Confidence 4577779976432 1112223566666531332222211112345677777777653 55 566655
No 44
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=20.83 E-value=1.5e+02 Score=26.93 Aligned_cols=90 Identities=9% Similarity=0.033 Sum_probs=51.0
Q ss_pred CCCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeeccccc---cc
Q 023828 124 GDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPG---RH 200 (276)
Q Consensus 124 ~~~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G---~H 200 (276)
-+-.+.|++...+-++.-+..++.+..+|+.......-....+..-.-.++++.+-+ -|.+.-.|.|+.-..+ .|
T Consensus 189 ~~SsA~LI~n~~s~~~~k~~~i~~l~~rl~~v~~A~~~~~~~~n~p~~~l~~v~~~l--Pg~~~PTVs~l~~~~~wvAV~ 266 (299)
T 1h3d_A 189 YRSKACLIQRDGEMEESKQQLIDKLLTRIQGVIQARESKYIMMHAPTERLDEVIALL--PGAERPTILPLAGDQQRVAMH 266 (299)
T ss_dssp EEECEEEEEESSCCCHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCTTTHHHHHHHS--CCSSCCCBCCCC-------BE
T ss_pred EeeEEEEEEeccccChhHHHHHHHHHHHHHHHHHhhceeEEEEeCCHHHHHHHHHhc--CCCCCCccccccCCCCEEEEE
Confidence 345789999988855444456666666665443211123333443334466666554 4777888888865443 22
Q ss_pred c---cccHHHHHHHHHhh
Q 023828 201 W---CQDIPSLTAEAAKE 215 (276)
Q Consensus 201 ~---~~DIp~~l~~l~~~ 215 (276)
+ +.++.+.+.++++.
T Consensus 267 ~vv~~~~~~~~~~~Lk~~ 284 (299)
T 1h3d_A 267 MVSSETLFWETMEKLKAL 284 (299)
T ss_dssp EEESSCCCHHHHHHHHHT
T ss_pred EEEcHHHHHHHHHHHHHc
Confidence 2 35577777777654
No 45
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=20.58 E-value=2.9e+02 Score=22.84 Aligned_cols=67 Identities=13% Similarity=0.138 Sum_probs=41.0
Q ss_pred CcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCC---HHHHHHHHHHcCCCeEEEEeecc
Q 023828 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPS---IKDAFGSCVQQGANRVIVSPFFL 195 (276)
Q Consensus 126 ~~aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~Ps---L~eaLe~L~a~G~~~VvVVPLFL 195 (276)
...|-++.....++-....+..+.+.+++. + +.+.+...+ ...+ -.+.++.+.+.+++-|++.|...
T Consensus 5 ~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~-g-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vdgiii~~~~~ 74 (304)
T 3o1i_D 5 DEKICAIYPHLKDSYWLSVNYGMVSEAEKQ-G-VNLRVLEAG-GYPNKSRQEQQLALCTQWGANAIILGTVDP 74 (304)
T ss_dssp CCEEEEEESCSCSHHHHHHHHHHHHHHHHH-T-CEEEEEECS-STTCHHHHHHHHHHHHHHTCSEEEECCSST
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHHc-C-CeEEEEcCC-CCCCHHHHHHHHHHHHHcCCCEEEEeCCCh
Confidence 344555666555665666666666666654 4 345554433 1113 34677788888999999988643
No 46
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=20.44 E-value=2.8e+02 Score=20.84 Aligned_cols=89 Identities=21% Similarity=0.283 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeecccccccccccHHHHHHHHHhhCCCccEEEe
Q 023828 145 LKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAEAAKEHPGVPYIVT 224 (276)
Q Consensus 145 l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLFL~~G~H~~~DIp~~l~~l~~~~p~v~I~va 224 (276)
+....++-+..+|...++++. ....+.+.+..+++.|-.-|+. ..|.. .+|+.+.-.+.++. ++.+.+.
T Consensus 15 issvqerakhnypgryirtat---ssqdirdiiksmkdngkplvvf-----vngas-qndvnefqneakke--gvsydvl 83 (112)
T 2lnd_A 15 ISSVQERAKHNYPGRYIRTAT---SSQDIRDIIKSMKDNGKPLVVF-----VNGAS-QNDVNEFQNEAKKE--GVSYDVL 83 (112)
T ss_dssp HHHHHHHHHHHSCTTTEEEEC---SHHHHHHHHHHHTTCCSCEEEE-----ECSCC-HHHHHHHHHHHHHH--TCEEEEE
T ss_pred HHHHHHHhhcCCCCceeeecc---chhhHHHHHHHHHhcCCeEEEE-----ecCcc-cccHHHHHHHHHhc--Ccchhhh
Confidence 444555666677877788873 2345889999988776533322 23443 57888776666655 4677776
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhcC
Q 023828 225 APLGLHEQLVDVVNDRIKHCLSHAV 249 (276)
Q Consensus 225 ~PLG~~p~L~~lL~dRl~eAl~~~~ 249 (276)
..-. |+ -+.+|+++.+...+
T Consensus 84 kstd--pe---eltqrvreflktag 103 (112)
T 2lnd_A 84 KSTD--PE---ELTQRVREFLKTAG 103 (112)
T ss_dssp ECCC--HH---HHHHHHHHHHHHTT
T ss_pred ccCC--HH---HHHHHHHHHHHhcc
Confidence 6543 32 34678888887654
No 47
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=20.27 E-value=3.2e+02 Score=23.45 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=38.4
Q ss_pred cEEEEEeCCCCC-chhHHHHHHHHHHHHHHcCCccEEEEEeecCCCC-HHHHHHHHHH--cCCCeEEEEe
Q 023828 127 DGVIIVDHGSRR-RESNLMLKQFVAMFREKTGYLIVEPAHMELAEPS-IKDAFGSCVQ--QGANRVIVSP 192 (276)
Q Consensus 127 ~aLLLV~HGSr~-pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~Ps-L~eaLe~L~a--~G~~~VvVVP 192 (276)
..|.++..+... +-+...+..+.+.+++. + +.+.+...+. .+. -.+.++.+.+ ++++-|+++|
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~-g-~~~~~~~~~~-~~~~~~~~i~~~i~~~~~vDgiIi~~ 70 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARDL-G-LDLRILYAER-DPQNTLQQARELFQGRDKPDYLMLVN 70 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHHH-T-CEEEEEECTT-CHHHHHHHHHHHHHSSSCCSEEEEEC
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHHc-C-CeEEEEECCC-CHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 456667777665 66666666676666664 4 3455543331 111 2356777777 5898888876
No 48
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*
Probab=20.26 E-value=1.7e+02 Score=27.39 Aligned_cols=70 Identities=16% Similarity=0.242 Sum_probs=42.3
Q ss_pred CCCCHH---HHHHHHHHcCCC-eEEEEeecccccccccccHHHHHHHHHhhCC-----CccEEEeCCCCCCHHHHHHHHH
Q 023828 169 AEPSIK---DAFGSCVQQGAN-RVIVSPFFLFPGRHWCQDIPSLTAEAAKEHP-----GVPYIVTAPLGLHEQLVDVVND 239 (276)
Q Consensus 169 a~PsL~---eaLe~L~a~G~~-~VvVVPLFL~~G~H~~~DIp~~l~~l~~~~p-----~v~I~va~PLG~~p~L~~lL~d 239 (276)
..|+++ +++++|.+.|+. .|.+-|++++.|.. .|..+.++++.+..+ ++.+.+. .+=..+.+.+.+.+
T Consensus 235 ~aps~~~RL~Ai~~l~~aGipv~v~iaPIiP~~~~~--e~y~~lle~l~~~l~~~~~~~v~~e~i-~lR~~~~~~~~i~~ 311 (368)
T 4fhd_A 235 GTSSFDGRLAAARKVAGAGYKLGFVVAPIYRHEGWE--RGYFELFQELARQLEGMDLSDLTFELI-QHRFTKPAKRVIEQ 311 (368)
T ss_dssp TSCCHHHHHHHHHHHHHTTCEEEEEEEEECCCTTHH--HHHHHHHHHHHHHTTTSCCTTCEEEEE-ECCBCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEEEEeCcCCCCCCH--HHHHHHHHHHHHhhchhhcceEEEEEE-EEEcCHHHHHHHHH
Confidence 456665 556677788986 68888999987664 467777777765443 2232221 22233566655554
Q ss_pred HH
Q 023828 240 RI 241 (276)
Q Consensus 240 Rl 241 (276)
+.
T Consensus 312 ~~ 313 (368)
T 4fhd_A 312 RY 313 (368)
T ss_dssp HS
T ss_pred hC
Confidence 43
No 49
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=20.23 E-value=3.4e+02 Score=22.29 Aligned_cols=64 Identities=8% Similarity=-0.014 Sum_probs=36.3
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCC-HHHHHHHHHHcCCCeEEEEeec
Q 023828 128 GVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPS-IKDAFGSCVQQGANRVIVSPFF 194 (276)
Q Consensus 128 aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~Ps-L~eaLe~L~a~G~~~VvVVPLF 194 (276)
.|-++.....++-....+..+.+.+++. + +.+.+...+ ..+. ..+.++.+.+.+++-|++.|..
T Consensus 9 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-g-~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 9 SIGLLATSSEAAYFAEIIEAVEKNCFQK-G-YTLILGNAW-NNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHH-T-CEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHc-C-CeEEEEcCC-CChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 4555555555555555566666666654 4 344443322 1121 2355777778888888887753
No 50
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=20.16 E-value=94 Score=25.10 Aligned_cols=29 Identities=10% Similarity=-0.044 Sum_probs=22.9
Q ss_pred CCcEEEEEeCCCCCchhHHHHHHHHHHHH
Q 023828 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFR 153 (276)
Q Consensus 125 ~~~aLLLV~HGSr~pea~~~l~~lA~~L~ 153 (276)
.+.-+|+++.|.+..++.+++.++++++.
T Consensus 34 AkrPvil~G~g~~~~~a~~~l~~lae~~~ 62 (170)
T 3cf4_G 34 AKRPLLMVGTLALDPELLDRVVKISKAAN 62 (170)
T ss_dssp CSSEEEEECSTTCCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEECCCccchhHHHHHHHHHHHhC
Confidence 47889999999988777777777776653
No 51
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=20.13 E-value=1e+02 Score=25.41 Aligned_cols=44 Identities=14% Similarity=0.149 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCC
Q 023828 141 SNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGAN 186 (276)
Q Consensus 141 a~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~ 186 (276)
....++++.+.|.+.. ..+.+++..+..+.|.++|.+..++|++
T Consensus 56 ~~~~~~~ii~~I~~A~--~sI~i~~Y~~~~~~I~~aL~~Aa~RGV~ 99 (220)
T 4gel_A 56 SLRNVAKIVEQIDRAV--YSIDLAIYTFTSLFLADSIKRALQRGVI 99 (220)
T ss_dssp HHHHHHHHHHHHHTCS--SEEEEECSCBCCHHHHHHHHHHHHHTCE
T ss_pred cHHHHHHHHHHHHHhh--hEEEEEEEEeCCHHHHHHHHHHHHcCCe
Confidence 4456888888888754 3578887777777899999988889986
No 52
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=20.02 E-value=2.6e+02 Score=23.47 Aligned_cols=65 Identities=5% Similarity=-0.085 Sum_probs=41.3
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHHHHHcCCccEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEeec
Q 023828 128 GVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF 194 (276)
Q Consensus 128 aLLLV~HGSr~pea~~~l~~lA~~L~~r~~~~~V~~AfLE~a~PsL~eaLe~L~a~G~~~VvVVPLF 194 (276)
.|-+|.....++-....+..+.+.+++. + +.+.+...+.......+.++.+.+.+++-|++.|..
T Consensus 17 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~-g-~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 81 (303)
T 3kke_A 17 TIGLIVPDVNNAVFADMFSGVQMAASGH-S-TDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRRE 81 (303)
T ss_dssp CEEEEESCTTSTTHHHHHHHHHHHHHHT-T-CCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCT
T ss_pred EEEEEeCCCcChHHHHHHHHHHHHHHHC-C-CEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3555555556666666677777777764 4 345555544222223567788888899999998763
Done!