BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023829
(276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L0Y|A Chain A, Crystal Structure Of Scp1 Phosphatase D98a Mutant
pdb|3L0Y|B Chain B, Crystal Structure Of Scp1 Phosphatase D98a Mutant
Length = 184
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Query: 147 INHVTVFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTS 206
++ V V +RP + EFL+++ E + +LFTA L YA P+ D +D F RL+R S
Sbjct: 52 VHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVF 111
Query: 207 TEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIP 245
+VKDLS L +DL R LI+DN+P S++ P N +P
Sbjct: 112 HR-GNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVP 149
>pdb|2GHQ|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHQ|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
Length = 181
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Query: 147 INHVTVFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTS 206
++ V V +RP + EFL+++ E + +LFTA L YA P+ D +D F RL+R S
Sbjct: 49 VHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVF 108
Query: 207 TEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIP 245
+VKDLS L +DL R LI+DN+P S++ P N +P
Sbjct: 109 HR-GNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVP 146
>pdb|1TA0|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein With Associated Ligand
Length = 197
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Query: 147 INHVTVFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTS 206
++ V V +RP + EFL+++ E + +LFTA L YA P+ D +D F RL+R S
Sbjct: 49 VHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCV- 107
Query: 207 TEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIP 245
+VKDLS L +DL R LI+DN+P S++ P N +P
Sbjct: 108 FHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVP 146
>pdb|3PGL|A Chain A, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
pdb|3PGL|B Chain B, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
Length = 180
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Query: 147 INHVTVFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTS 206
++ V V +RP + EFL+++ E + +LFTA L YA P+ D +D F RL+R S
Sbjct: 48 VHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVF 107
Query: 207 TEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIP 245
+VKDLS L +DL R LI+DN+P S++ P N +P
Sbjct: 108 HR-GNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVP 145
>pdb|2Q5E|A Chain A, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|B Chain B, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|C Chain C, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|D Chain D, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|E Chain E, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|F Chain F, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|G Chain G, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|H Chain H, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
Length = 187
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 65/106 (61%), Gaps = 3/106 (2%)
Query: 140 ECEGKPKINHVTVFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRL 199
E EG + V V +RP + EFL+++ E + +LFTA L YA P+ D +D +F RL
Sbjct: 46 EIEGT--THQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRARL 103
Query: 200 YRPSTTSTEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIP 245
+R S + +VKDLS L +DL +TLI+DN+P S++ P N +P
Sbjct: 104 FRESCVFHQ-GCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVP 148
>pdb|1T9Z|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein
Length = 197
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
Query: 147 INHVTVFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTS 206
++ V V +RP + EFL++ E + +LFTA L YA P+ D +D F RL+R S
Sbjct: 49 VHQVYVLKRPHVDEFLQRXGELFECVLFTASLAKYADPVADXLDKWGAFRARLFRESCV- 107
Query: 207 TEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIP 245
+VKDLS L +DL R LI DN+P S++ P N +P
Sbjct: 108 FHRGNYVKDLSRLGRDLRRVLIXDNSPASYVFHPDNAVP 146
>pdb|2HHL|A Chain A, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|B Chain B, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|C Chain C, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|D Chain D, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
Length = 195
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Query: 147 INHVTVFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTS 206
I+ V V +RP + EFL+++ + + +LFTA L YA P+ D +D +F RL+R S
Sbjct: 62 IHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCV- 120
Query: 207 TEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPC 246
+VKDLS L ++L + +IVDN+P S++ P N +P
Sbjct: 121 FHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPV 160
>pdb|3L0B|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant
Phosphory Intermediate
pdb|3L0B|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant
Phosphory Intermediate
Length = 184
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 147 INHVTVFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTS 206
++ V V +RP + EFL+++ E + +LFTA L YA P+ D +D F RL+R S
Sbjct: 52 VHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVF 111
Query: 207 TEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIP 245
+VKDLS L +DL R LI+ N+P S++ P N +P
Sbjct: 112 HR-GNYVKDLSRLGRDLRRVLILANSPASYVFHPDNAVP 149
>pdb|3L0C|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
pdb|3L0C|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
Length = 184
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 147 INHVTVFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTS 206
++ V V +RP + EFL+++ E + +LFTA L YA P+ D +D F RL+R S
Sbjct: 52 VHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVF 111
Query: 207 TEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIP 245
+VKDLS L +DL R LI+ N+P S++ P N +P
Sbjct: 112 HR-GNYVKDLSRLGRDLRRVLILANSPASYVFHPDNAVP 149
>pdb|3QLE|A Chain A, Structural Basis For The Function Of Tim50 In The
Mitochondrial Presequence Translocase
Length = 204
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 72/119 (60%), Gaps = 8/119 (6%)
Query: 154 ERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLF-SLRLYRPSTTSTEYRE- 211
+RPG FL LS++ +++LF++ Y+ + +++D + F S L++ Y++
Sbjct: 60 KRPGADYFLGYLSQYYEIVLFSSNYMMYSDKIAEKLDPIHAFVSYNLFKEHCV---YKDG 116
Query: 212 -HVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQVLTNVTLLKFL 269
H+KDLS L++DL + +I+D +P S+ LQP N IP P++ D++++ + L++L
Sbjct: 117 VHIKDLSKLNRDLSKVIIIDTDPNSYKLQPENAIPMEPWNGEA--DDKLVRLIPFLEYL 173
>pdb|3EF0|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 372
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 155 RPGLREFLKQLSEFADLILFTAGLEGYARPLVDRID-GENLFSLR-LYRPSTTSTEYREH 212
RPGL +FL+++SE +L ++T G + YA+ + ID LF R L R + S +
Sbjct: 77 RPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLAQKSL 136
Query: 213 VKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPF 249
+ C D +++D+ + P N I +P+
Sbjct: 137 RRLFPC---DTSMVVVIDDRGDVWDWNP-NLIKVVPY 169
>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 442
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 155 RPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGE-NLFSLR-LYRPSTTSTEYREH 212
RPGL +FL+++SE +L ++T G + YA+ + ID LF R L R + S +
Sbjct: 85 RPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLAQKSL 144
Query: 213 VKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPF 249
+ C D +++D+ + P N I +P+
Sbjct: 145 RRLFPC---DTSMVVVIDDRGDVWDWNP-NLIKVVPY 177
>pdb|2H8G|A Chain A, 5'-Methylthioadenosine Nucleosidase From Arabidopsis
Thaliana
pdb|2H8G|B Chain B, 5'-Methylthioadenosine Nucleosidase From Arabidopsis
Thaliana
pdb|2QSU|A Chain A, Structure Of Arabidopsis Thaliana 5'-Methylthioadenosine
Nucleosidase In Apo Form
pdb|2QSU|B Chain B, Structure Of Arabidopsis Thaliana 5'-Methylthioadenosine
Nucleosidase In Apo Form
pdb|2QTG|A Chain A, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With 5'-
Methylthiotubercidin
pdb|2QTG|B Chain B, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With 5'-
Methylthiotubercidin
pdb|2QTT|A Chain A, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With
Formycin A
pdb|2QTT|B Chain B, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With
Formycin A
pdb|3LGS|A Chain A, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
pdb|3LGS|B Chain B, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
pdb|3LGS|C Chain C, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
pdb|3LGS|D Chain D, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
Length = 267
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 154 ERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSL 197
++P EFL+ L+ + TA LEG A +++ I+G NL L
Sbjct: 230 DKPTAEEFLQNLT------VVTAALEGTATKVINFINGRNLSDL 267
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,397,315
Number of Sequences: 62578
Number of extensions: 267504
Number of successful extensions: 558
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 535
Number of HSP's gapped (non-prelim): 14
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)