Query 023831
Match_columns 276
No_of_seqs 270 out of 1423
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 06:58:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023831.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023831hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2058 Ypt/Rab GTPase activat 100.0 5.4E-44 1.2E-48 328.6 19.1 218 34-272 88-312 (436)
2 KOG2223 Uncharacterized conser 100.0 5.6E-37 1.2E-41 275.5 11.5 259 1-276 198-476 (586)
3 smart00164 TBC Domain in Tre-2 100.0 1.1E-35 2.4E-40 252.2 15.9 156 114-270 2-159 (199)
4 KOG2221 PDZ-domain interacting 100.0 2.6E-36 5.5E-41 250.2 2.7 208 36-271 46-255 (267)
5 KOG2222 Uncharacterized conser 100.0 6.8E-33 1.5E-37 251.8 9.1 167 103-271 156-325 (848)
6 COG5210 GTPase-activating prot 100.0 1.3E-31 2.8E-36 256.6 15.6 168 103-271 199-371 (496)
7 KOG4347 GTPase-activating prot 100.0 3.3E-30 7.2E-35 242.1 15.5 207 37-272 149-355 (671)
8 PF00566 RabGAP-TBC: Rab-GTPas 99.9 2.3E-26 4.9E-31 196.4 12.9 152 119-271 1-158 (214)
9 KOG4436 Predicted GTPase activ 99.9 1.9E-23 4.1E-28 199.9 13.9 163 104-271 565-735 (948)
10 KOG1092 Ypt/Rab-specific GTPas 99.9 7.4E-24 1.6E-28 190.9 8.6 171 103-275 175-383 (484)
11 KOG4567 GTPase-activating prot 99.9 1.7E-23 3.8E-28 182.2 9.2 166 104-271 23-272 (370)
12 KOG1102 Rab6 GTPase activator 99.9 6.4E-23 1.4E-27 190.6 13.2 162 104-271 133-297 (397)
13 KOG2224 Uncharacterized conser 99.8 6.8E-20 1.5E-24 165.7 8.7 171 103-273 421-638 (781)
14 KOG1093 Predicted protein kina 99.8 2.2E-18 4.9E-23 160.6 12.1 158 106-271 345-504 (725)
15 KOG2197 Ypt/Rab-specific GTPas 99.7 1.4E-18 3E-23 164.8 6.1 156 114-271 175-350 (488)
16 KOG4436 Predicted GTPase activ 99.6 1.1E-15 2.5E-20 147.0 9.2 168 103-271 171-349 (948)
17 KOG2595 Predicted GTPase activ 99.4 4.8E-13 1E-17 118.5 7.6 158 105-271 47-211 (395)
18 KOG1091 Ypt/Rab-specific GTPas 99.3 1.4E-12 2.9E-17 122.1 4.5 116 157-272 103-273 (625)
19 KOG2801 Probable Rab-GAPs [Int 98.4 2.8E-06 6E-11 74.8 9.8 162 105-268 31-198 (559)
20 KOG1648 Uncharacterized conser 96.9 5.5E-05 1.2E-09 70.8 -3.9 121 107-231 549-678 (813)
21 KOG3636 Uncharacterized conser 96.0 0.02 4.3E-07 53.6 6.6 136 116-271 36-177 (669)
22 KOG2224 Uncharacterized conser 85.2 0.3 6.5E-06 45.7 0.4 27 207-233 574-600 (781)
23 KOG2197 Ypt/Rab-specific GTPas 50.1 6 0.00013 38.3 0.3 30 107-136 68-97 (488)
24 TIGR02433 lysidine_TilS_C tRNA 37.4 4.8 0.0001 25.3 -1.7 25 105-129 19-44 (47)
25 PF08109 Antimicrobial14: Lact 32.4 35 0.00077 19.0 1.5 15 199-213 3-17 (31)
26 PF12829 Mhr1: Transcriptional 30.8 12 0.00027 27.5 -0.6 45 105-149 26-73 (91)
27 PF08189 Meleagrin: Meleagrin/ 26.2 28 0.00062 20.9 0.5 11 194-204 4-14 (39)
28 COG5460 Uncharacterized conser 24.6 59 0.0013 23.1 1.9 24 201-224 51-74 (82)
No 1
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-44 Score=328.65 Aligned_cols=218 Identities=40% Similarity=0.623 Sum_probs=175.2
Q ss_pred cccccccCCcccCCcch----HhHHHHHHHHHHHHhHHHHHHHHhhcCCccccccchhhhhhhhhhhcccccCCCCHHHH
Q 023831 34 VKFQDLYGFTVEGNVDD----VNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITL 109 (276)
Q Consensus 34 ~~~~D~yGF~~~~~~~~----~~~~~~~~~~~~~~~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 109 (276)
...+|.|||........ ...+....+...++..+|..+...+ -+|.. +-.....+.+|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~k~~s~~~~~~~r~~~~~~l~~~~~-~~~~~-----------------~~~~~~~s~el 149 (436)
T KOG2058|consen 88 NNGFDQYSLQKLIGLPPSDGYLKWLSSYLAYEERRQLRWELELQSN-IKLHS-----------------PNDFPPRSDEL 149 (436)
T ss_pred cCcccccchhhcccCCcchhhhHHHHHhhhhhhhHHHHHHHHhhhh-hcccc-----------------cccccCCcHHH
Confidence 34679999875433222 1222222333344555777776555 55532 11123468999
Q ss_pred HHHHHhCCCCchHHHHHHHHHcchhhhccCchHHHHHHHHHhcCCCCchhhhhhhcCCCCCCCC-CCCCCch--hHHHHH
Q 023831 110 KKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGH-PWLDTPD--GHATLR 186 (276)
Q Consensus 110 k~l~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~RT~p~~-~~F~~~~--~~~~L~ 186 (276)
|+++|+|||+++|+.||..++|...... . .++|++++.....+.++..++|+.|+.||||++ +.|..++ +++.|+
T Consensus 150 k~liRkGiP~~~R~~VW~~~~g~~~~~~-~-~~~yq~ll~~~~~~~~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~Lr 227 (436)
T KOG2058|consen 150 KRLIRKGIPPELRGEVWWVLSGARRQLN-Y-PGYYQELLRKGDEKKSPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTLR 227 (436)
T ss_pred HHHHHcCCChhhhhHHHHHHhcchhhcc-C-chhHHHHHhcCCCccchHHHHHHhccccccCCCcccCCCCCchHHHHHH
Confidence 9999999999999999999999433322 2 368999988766666689999999999999999 7888754 489999
Q ss_pred HHHhhhhhcCCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHhhcCCccCcCCCchhHHHHHHHHHHHHHHhCHHHHH
Q 023831 187 RVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRYAL 266 (276)
Q Consensus 187 rVL~ays~~~p~iGY~QGm~~Iaa~LLl~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~Ll~~~~P~L~~ 266 (276)
|||.||+.+||+||||||||++||+||++|++||+|||||+.|++++++. ||++++.|.++++.||+.||++.+|+|+.
T Consensus 228 RvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~lp~-Yyt~nL~g~qvDQ~VL~~llre~lPkl~~ 306 (436)
T KOG2058|consen 228 RVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYLPR-YYTPNLIGSQVDQKVLRELLREKLPKLSL 306 (436)
T ss_pred HHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhchh-hcCchhhhhhccHHHHHHHHHHHCHHHHH
Confidence 99999999999999999999999999999977999999999999999854 99999999999999999999999999999
Q ss_pred HHHHhh
Q 023831 267 VYEEFL 272 (276)
Q Consensus 267 hl~~~~ 272 (276)
||+.+.
T Consensus 307 ~l~~~~ 312 (436)
T KOG2058|consen 307 HLEGNG 312 (436)
T ss_pred hhhhcC
Confidence 998874
No 2
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=5.6e-37 Score=275.50 Aligned_cols=259 Identities=24% Similarity=0.330 Sum_probs=190.2
Q ss_pred CCCCcccchhhhhhhccccccCCcc-cccccCcCcccccccCCcccCCcchHhHHHHHHHHHHHHhHHHHHHHHhhcCCc
Q 023831 1 MYGTQSKRDLALELQAQIPFLRPSI-HARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANW 79 (276)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~D~yGF~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~w 79 (276)
|||.+||++|.++.++.|++-+||. ..+......++..+|-=++. ..+.++..++++++ +|.+.+..--
T Consensus 198 lfgkrnkQsgflattaliledRPS~LPaKsaeEa~kHrqeyeei~~--------qAkkre~k~~ker~--k~~eer~r~e 267 (586)
T KOG2223|consen 198 LFGKRNKQSGFLATTALILEDRPSNLPAKSAEEAKKHRQEYEEIVK--------QAKKRERKEAKERK--KMVEERNRLE 267 (586)
T ss_pred hhcccccccchhhhhhhhhcCCCCCCCCccHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH--HHHHHHHhHH
Confidence 7999999999999999999999984 55555555555555432221 11111111111111 1111111000
Q ss_pred cccccchhhhhhhhhhhcccccCCCCHHHHHHHHHhCCCCchHHHHHHHHHcchhhhccCchHHHHHHHHH---------
Q 023831 80 YLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKA--------- 150 (276)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~l~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~--------- 150 (276)
+...-....+..+++. +|....++.+++.++|.|||+++||.||...+|+.-... ...|..++.+
T Consensus 268 e~~~~~v~vW~~eILp---nWe~m~~SrR~relWwQGiP~~VRGkvW~laIGNel~it---~elfd~~la~Aker~ak~~ 341 (586)
T KOG2223|consen 268 ERIAYAVNVWENEILP---NWEDMLKSRRVRELWWQGIPPSVRGKVWSLAIGNELNIT---YELFDIALARAKEREAKSL 341 (586)
T ss_pred HHHHHHHHHHHHHhcc---chHHHHhhHHHHHHHHccCChhhcchhhHhhhCcccccC---HHHHHHHHHHHHHHHHHHH
Confidence 0000001112334443 788888999999999999999999999999999853221 2234333322
Q ss_pred ---hcC---CCCchhhhhhhcCCCCCCCCCCCCCch-hHHHHHHHHhhhhhcCCCCCcccchhHHHHHHHHhcCCHHHHH
Q 023831 151 ---VEG---KVTPATKQIDHDLPRTFPGHPWLDTPD-GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAF 223 (276)
Q Consensus 151 ---~~~---~~~~~~~qI~~Dv~RT~p~~~~F~~~~-~~~~L~rVL~ays~~~p~iGY~QGm~~Iaa~LLl~~~~Ee~aF 223 (276)
... .......+|..|+.||||+..+|+.++ -.+.|..+|.||+.|.|+|||+|||++|||+||+.| ++.+||
T Consensus 342 aeq~~~sa~~re~sv~~i~LDisrTfpsl~iFqk~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnm-d~~~AF 420 (586)
T KOG2223|consen 342 AEQMSNSAADREASVELIKLDISRTFPSLSIFQKGGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNM-DLADAF 420 (586)
T ss_pred HhhcccchhhhhcchhheeechhccCcceeeeccCCchHHHHHHHhhhheeecCccccccchHHHHHHHHHcC-CcHHHH
Confidence 210 112457899999999999999999765 489999999999999999999999999999999999 899999
Q ss_pred HHHHHHHhhcCCccCcCCCchhHHHHHHHHHHHHHHhCHHHHHHHHHh---hhhcC
Q 023831 224 WMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRYALVYEEF---LDIYV 276 (276)
Q Consensus 224 ~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~Ll~~~~P~L~~hl~~~---~~~~~ 276 (276)
.||.+|+++.+...+|..+.+.+..++..|+..+++.+|+|+.||+++ +|+|+
T Consensus 421 iafANLLdkp~q~Aff~~d~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiyl 476 (586)
T KOG2223|consen 421 IAFANLLDKPCQQAFFRVDHSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYL 476 (586)
T ss_pred HHHHHHhccHHHHHHHhcCcHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhh
Confidence 999999999888899999999999999999999999999999999988 78885
No 3
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=1.1e-35 Score=252.23 Aligned_cols=156 Identities=38% Similarity=0.653 Sum_probs=140.2
Q ss_pred HhCCCCchHHHHHHHHHcchhhhccCchHHHHHHHHHhcCCCCchhhhhhhcCCCCCCCCCCCCCc--hhHHHHHHHHhh
Q 023831 114 RKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP--DGHATLRRVLVG 191 (276)
Q Consensus 114 ~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~--~~~~~L~rVL~a 191 (276)
++|||+++|+.+|+.++|+.....+.....|+++.+.....+....++|++||.||+|++++|+.. .+++.|.|||.|
T Consensus 2 ~~Gip~~~R~~vW~~ll~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~~ 81 (199)
T smart00164 2 RKGVPPSLRGVVWKLLLNAQPMDTSADKDLYSRLLKETAPKDKSIVHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLKA 81 (199)
T ss_pred CCCCCHHHHHHHHHHHhCCchhhhcccchHHHHHHHhhcCCChhhHHHHhcccCCCCCCchhhcCCCcccHHHHHHHHHH
Confidence 689999999999999999987654333468999988765544446799999999999999999864 489999999999
Q ss_pred hhhcCCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHhhcCCccCcCCCchhHHHHHHHHHHHHHHhCHHHHHHHHH
Q 023831 192 YSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRYALVYEE 270 (276)
Q Consensus 192 ys~~~p~iGY~QGm~~Iaa~LLl~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~Ll~~~~P~L~~hl~~ 270 (276)
|+.+||++|||||||+|||+||+++++|++|||||+++|+++. ..+|.++++++...+.+++.+|++++|+||+||++
T Consensus 82 ~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~~p~l~~~l~~ 159 (199)
T smart00164 82 YALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYG-PNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKD 159 (199)
T ss_pred HHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC-cccCCCChHHHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence 9999999999999999999999999789999999999999987 47789999999999999999999999999999995
No 4
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-36 Score=250.19 Aligned_cols=208 Identities=28% Similarity=0.467 Sum_probs=176.4
Q ss_pred cccccCCcccCCcchHhHHHHHHHHHHHHhHHHHHHHHhhcCCccccccchhhhhhhhhhhcccccCCCCHHHHHHHHHh
Q 023831 36 FQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRK 115 (276)
Q Consensus 36 ~~D~yGF~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~l~~~ 115 (276)
..|++||+...+..+.+.....++..+.|+.+|..|. ++|...+ ....++++.+|++
T Consensus 46 ~pdr~gfi~~~q~a~~~k~~~~~~~L~~ReskwL~ml----dnw~~~m-------------------~kk~~~ir~rcrk 102 (267)
T KOG2221|consen 46 LPDRFGFIEGEQGAQGKKEPETRGELRYRESKWLHML----DNWHEEM-------------------RKKQKKIRPRCRK 102 (267)
T ss_pred CCcccceeecccccccCCCcccHHHHHhhHHHHHHHH----HHHHHHH-------------------Hhccccccchhhc
Confidence 3499999975544444433444566778888999986 5664321 1256789999999
Q ss_pred CCCCchHHHHHHHHHcchhhhccCchHHHHHHHHHhcCCCCchhhhhhhcCCCCCCCCCCCCCch--hHHHHHHHHhhhh
Q 023831 116 GIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPD--GHATLRRVLVGYS 193 (276)
Q Consensus 116 GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~--~~~~L~rVL~ays 193 (276)
|||+++|+.+|.+++|+......++ ..|.++...-. +....+.|.+|++|.||+|.+|.+.. |++.|+|||+||+
T Consensus 103 gippslr~Raw~ylsGa~~~~~~np-~~~~~~~~~pG--~p~t~e~i~kdl~rqfp~hemf~s~~k~gkqelfr~lka~t 179 (267)
T KOG2221|consen 103 GIPPSLRGRAWRYLSGAPSPPPKNP-VVFDELGPAPG--DPKTAEGIHKDLHRQFPFHEMFGSSGKTGKQELFRVLKAYT 179 (267)
T ss_pred CCCcccchhHHHhhcCCCCCCCCCc-chhhhccCCCC--CCcchhhhccccccCCCcccccccccccchHHHHHHHHHHH
Confidence 9999999999999999988777776 46777665432 35678899999999999999998753 7999999999999
Q ss_pred hcCCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHhhcCCccCcCCCchhHHHHHHHHHHHHHHhCHHHHHHHHHh
Q 023831 194 FRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRYALVYEEF 271 (276)
Q Consensus 194 ~~~p~iGY~QGm~~Iaa~LLl~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~Ll~~~~P~L~~hl~~~ 271 (276)
+++|+.||||+-..|||+||++|+ +++|||||+.++++|+ ++||+.++..++.+-.++..|+++.+|-.|.|+...
T Consensus 180 i~~pe~g~cq~qapiaa~llmhmp-~rdaf~~~vqicekyl-qgy~~sgleaiq~dg~il~~Llkk~~~p~~rH~~~~ 255 (267)
T KOG2221|consen 180 IYKPEEGYCQAQAPIAAVLLMHMP-ARDAFWCFVQICEKYL-QGYYSSGLEAIQNDGGILEGLLKKASPPPYRHLGGD 255 (267)
T ss_pred HhCchhhhhhhhchHHHHHHhccc-HHHHHHHHHHHHHHHc-ccccccchhhhhcccHHHHHHHHhcCCCCCcccccC
Confidence 999999999999999999999995 8999999999999997 899999999999999999999999999999999866
No 5
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=99.98 E-value=6.8e-33 Score=251.77 Aligned_cols=167 Identities=35% Similarity=0.632 Sum_probs=152.7
Q ss_pred CCCHHHHHHHHHhC-CCCchHHHHHHHHHcchhhhccCchHHHHHHHHHhcCCCCchhhhhhhcCCCCCCCCCCCCCc--
Q 023831 103 LANAITLKKLIRKG-IPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP-- 179 (276)
Q Consensus 103 ~~~~~~lk~l~~~G-IP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~-- 179 (276)
..+.++++.+++.| ||.++|+.+|+.|+|+..++... +.-|+++++.........-+||++|+-|+.|++..|..+
T Consensus 156 ~~ktdk~~~llkeggiphslr~~lw~rlsga~~kkk~a-e~sy~~ilk~~andk~~~~~qiekdllr~lpnn~cf~k~n~ 234 (848)
T KOG2222|consen 156 ELKTDKFEELLKEGGIPHSLRAFLWMRLSGALAKKKDA-ETSYEDILKACANDKLMIGKQIEKDLLRILPNNACFSKKNG 234 (848)
T ss_pred ccchHHHHHHHHcCCCCcchhHHHHHHhhhhhhhhccc-cccHHHHHHHhcccccchhHHHHHHHHHhCCCcceeeCCCC
Confidence 34789999999765 99999999999999987665544 356999998887766778899999999999999999875
Q ss_pred hhHHHHHHHHhhhhhcCCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHhhcCCccCcCCCchhHHHHHHHHHHHHHH
Q 023831 180 DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVK 259 (276)
Q Consensus 180 ~~~~~L~rVL~ays~~~p~iGY~QGm~~Iaa~LLl~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~Ll~~ 259 (276)
.|.+.|+|||++.+...|++||||||.-|+|.||+++ .||.|||++.+|++.+++..||+.++.|++++.++...|++.
T Consensus 235 ~gi~~lrrilk~ia~ifpdigycqg~gviva~lllf~-~ee~afwmmaaiiedilp~nfysqtllgiqaderv~~~li~~ 313 (848)
T KOG2222|consen 235 EGIEALRRILKCIAFIFPDIGYCQGMGVIVACLLLFC-EEENAFWMMAAIIEDILPANFYSQTLLGIQADERVMHHLIAC 313 (848)
T ss_pred cchHHHHHHHhhheeecCCcccccCccHHHHHHHHHh-cchhHHHHHHHHHHHhcCchhhhhhHhccchhHHHHHHHHHh
Confidence 5799999999999999999999999999999999999 699999999999999999999999999999999999999999
Q ss_pred hCHHHHHHHHHh
Q 023831 260 QCPRYALVYEEF 271 (276)
Q Consensus 260 ~~P~L~~hl~~~ 271 (276)
++|+|.+-|+.+
T Consensus 314 ~l~~ldeal~~~ 325 (848)
T KOG2222|consen 314 HLPDLDEALEDH 325 (848)
T ss_pred ccCchhHHHHhc
Confidence 999999998876
No 6
>COG5210 GTPase-activating protein [General function prediction only]
Probab=99.97 E-value=1.3e-31 Score=256.58 Aligned_cols=168 Identities=38% Similarity=0.577 Sum_probs=148.2
Q ss_pred CCCHHHHHHHHHhCCCCchHHHHHHHHHcchhhhccCchHHHHHHHHHhcC-CCC--chhhhhhhcCCCCCCCCCCCCCc
Q 023831 103 LANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEG-KVT--PATKQIDHDLPRTFPGHPWLDTP 179 (276)
Q Consensus 103 ~~~~~~lk~l~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~-~~~--~~~~qI~~Dv~RT~p~~~~F~~~ 179 (276)
.....+++.++++|||+++|+.+|..++|........+ +.|..+...... ... ....+|++||.||||.+..|+..
T Consensus 199 ~~~~~~~~~~i~~gip~~~r~~vw~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~~~i~~Dl~rt~~~~~~f~~~ 277 (496)
T COG5210 199 PVQLSKLRELIRKGIPNELRGDVWEFLLGIGFDLDKNP-GLYERLLNLHREAKIPTQEIISQIEKDLSRTFPDNSLFQTE 277 (496)
T ss_pred hhhHHHHHHHHHhcCChHhhhhhHHHHhccchhhccCc-hHHHHHHHHHHhcCCCcHHHHHHHHccccccccccccccCc
Confidence 34778999999999999999999999999877665543 567776653322 222 36899999999999999999987
Q ss_pred hhHHH--HHHHHhhhhhcCCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHhhcCCccCcCCCchhHHHHHHHHHHHH
Q 023831 180 DGHAT--LRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLL 257 (276)
Q Consensus 180 ~~~~~--L~rVL~ays~~~p~iGY~QGm~~Iaa~LLl~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~Ll 257 (276)
.+... |+|||.||+.+||++|||||||+|||+||++|++|++|||||++||+.+.++++|..++.|++.++.++..++
T Consensus 278 ~s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee~AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~~l~~~v 357 (496)
T COG5210 278 ISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLV 357 (496)
T ss_pred ccccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhHHHHHHHHHHHHhccchhhcccCCcHHHHHHHHHHHHH
Confidence 76555 9999999999999999999999999999999966999999999999976679999999999999999999999
Q ss_pred HHhCHHHHHHHHHh
Q 023831 258 VKQCPRYALVYEEF 271 (276)
Q Consensus 258 ~~~~P~L~~hl~~~ 271 (276)
+..+|+||+||+..
T Consensus 358 ~~~~p~l~~hl~~~ 371 (496)
T COG5210 358 EELDPELYEHLLRE 371 (496)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999875
No 7
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=99.97 E-value=3.3e-30 Score=242.14 Aligned_cols=207 Identities=32% Similarity=0.559 Sum_probs=176.7
Q ss_pred ccccCCcccCCcchHhHHHHHHHHHHHHhHHHHHHHHhhcCCccccccchhhhhhhhhhhcccccCCCCHHHHHHHHHhC
Q 023831 37 QDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKG 116 (276)
Q Consensus 37 ~D~yGF~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~l~~~G 116 (276)
.+.+||......+..... . +.+.+++.|.+.-...|.+ ..+. ...+++++++.|
T Consensus 149 ~~~~~~~~~~~~~~d~~~--l--re~~k~k~W~~~f~~~G~~-------------~~~~---------qt~~~~Klv~~g 202 (671)
T KOG4347|consen 149 ESALGFGEKGKYKIDPRA--L--REWAKEKFWKKYFIKDGPN-------------MNQI---------QTILLRKLLYNG 202 (671)
T ss_pred cchhcccccCCCCCChHH--H--HHHHHHHHHHHHHHHhccc-------------ccHH---------HHHHHHHHHHHh
Confidence 688888765443332222 1 2233444577765444432 2222 678999999999
Q ss_pred CCCchHHHHHHHHHcchhhhccCchHHHHHHHHHhcCCCCchhhhhhhcCCCCCCCCCCCCCchhHHHHHHHHhhhhhcC
Q 023831 117 IPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRD 196 (276)
Q Consensus 117 IP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~L~rVL~ays~~~ 196 (276)
||...|+++|..++|+...+..++ ++|.++++...++.+-+.+.|++|++|..|.|+-|+.+.|...|+|||.||++.|
T Consensus 203 ipe~~rgeiW~l~sGav~~~l~~~-Geygkll~~~~G~~~~a~eEIE~Dl~rsLpEhpA~Q~e~gi~aLR~vL~Aya~~N 281 (671)
T KOG4347|consen 203 FPEDPRGEIWYLASGAVASLLLNP-GEYGKLLHSVTGKRSVATEEIEPDLGRSLPEHPAFQSEPGIAALRRVLTAYAWSN 281 (671)
T ss_pred cCCChHHHHHHhhhHHHHHhhcCc-HHhhhhhhcccCCcccccccccCCCCCCCCcchhhhCCCchhhHHHHHHhhhccC
Confidence 999999999999999988777776 7899999988787788899999999999999999999999999999999999999
Q ss_pred CCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHhhcCCccCcCCCchhHHHHHHHHHHHHHHhCHHHHHHHHHhh
Q 023831 197 SDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRYALVYEEFL 272 (276)
Q Consensus 197 p~iGY~QGm~~Iaa~LLl~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~Ll~~~~P~L~~hl~~~~ 272 (276)
|+|||||.||.+++.+|+++ .||+|||+++.+++.+. ++||+..+.|...++.+|+.|++..+|.|++|+..+.
T Consensus 282 p~vGYcQaMNIV~s~lll~~-~EEeafwll~~lce~~i-p~yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~ 355 (671)
T KOG4347|consen 282 PEVGYCQAMNIVGSELLLFC-KEEEAFWLLSKLCEIYI-PDYYSKTVVGTLIDQSVFEELVEDTLPVLGEHLAVLG 355 (671)
T ss_pred CchhHHHHHHHHHHhhhhhh-ccchHHHHHHHHHHHhc-ccccchhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhc
Confidence 99999999999999999999 79999999999999986 8999999999999999999999999999999998875
No 8
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=99.94 E-value=2.3e-26 Score=196.44 Aligned_cols=152 Identities=31% Similarity=0.492 Sum_probs=123.0
Q ss_pred CchHHHHHHHHHcchh-hhcc-----CchHHHHHHHHHhcCCCCchhhhhhhcCCCCCCCCCCCCCchhHHHHHHHHhhh
Q 023831 119 PVLRPKVWFSLSGAAK-KKST-----VPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGY 192 (276)
Q Consensus 119 ~~~R~~vW~~llg~~~-~~~~-----~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~L~rVL~ay 192 (276)
+++|+.+|+.++|... .... .....+............+..++|++||.||++++..+....+++.|.+||.+|
T Consensus 1 ~~~R~~vW~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~rt~~~~~~~~~~~~~~~l~~iL~~~ 80 (214)
T PF00566_consen 1 HSLRGQVWKILLGIEPNYSNNYQDEKNQWEQIESKSSNSNKLDNKIFEQIDKDVNRTFPNSFLFKNEQNQKSLERILSAY 80 (214)
T ss_dssp -CCHHHHHHHHCTCSCHHHHHHHHHHHHHHHHHHHHHHCTSTCHTCHHHHHHHHCTSSTSCCCSTTHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHccchhhhhhHHHHhhhhhhhhHHHHHhccccchHHHHHHHhhhhhcccchhhhhcchHHHHHHHHHHh
Confidence 4689999999999853 0000 000112222222333445679999999999999778888888999999999999
Q ss_pred hhcCCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHhhcCCccCcCCCchhHHHHHHHHHHHHHHhCHHHHHHHHHh
Q 023831 193 SFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRYALVYEEF 271 (276)
Q Consensus 193 s~~~p~iGY~QGm~~Iaa~LLl~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~Ll~~~~P~L~~hl~~~ 271 (276)
+.++|++||||||++|++++++++.+|++||||++.+++. .++.+|..+.++++..+..++.++++++|+|++||++.
T Consensus 81 ~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~ 158 (214)
T PF00566_consen 81 AKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLNY-YLPDFFQPNFKGLQKILKIFEQLLKKHDPELYNHLKQL 158 (214)
T ss_dssp HHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHTH-HGGGGTSTTHHHHHHHHHHHHHHHHHHTHHHHHHHHHT
T ss_pred ccccccccccchhhhhhhhhhhhcccccchhccccchhcc-cccccccccccccchhhhhHHHHHHhhhhhhhhhhhhh
Confidence 9999999999999999999997666899999999999943 45899999999999999999999999999999999885
No 9
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.90 E-value=1.9e-23 Score=199.85 Aligned_cols=163 Identities=31% Similarity=0.496 Sum_probs=144.9
Q ss_pred CCHHHHHHHHHhCCCCchHHHHHHHHHcchhhh------ccCchHHHHHHHHHhcCCCCchhhhhhhcCCCCCCCCCCCC
Q 023831 104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKK------STVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLD 177 (276)
Q Consensus 104 ~~~~~lk~l~~~GIP~~~R~~vW~~llg~~~~~------~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~RT~p~~~~F~ 177 (276)
.+.+.+...++.|+|.+-|+.+|.++.-..... ..++.--|++++++. ++..+.|..|+.||||+|++|+
T Consensus 565 ~d~ed~~~~l~~gvprsrrgeiwtflA~q~~~~~~l~~~kr~~~~p~~~llkqL----te~qhAi~idlgrtfp~h~~~~ 640 (948)
T KOG4436|consen 565 KDMEDLHSALRTGVPRSRRGEIWTFLAEQHSLNHALPDKKRPPDFPYKELLKQL----TEQQHAILIDLGRTFPTHPYFS 640 (948)
T ss_pred ccHHHHHHHHHccCchhhhHHHHHHHHHHHHHhccCCcccCCCCCChHHHHHHH----HHHHHHHHHhhccccCCCHHHH
Confidence 478899999999999999999999997643222 223333478888874 4567889999999999999998
Q ss_pred Cc--hhHHHHHHHHhhhhhcCCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHhhcCCccCcCCCchhHHHHHHHHHH
Q 023831 178 TP--DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKD 255 (276)
Q Consensus 178 ~~--~~~~~L~rVL~ays~~~p~iGY~QGm~~Iaa~LLl~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~ 255 (276)
.. .|+..|+++|+||+..+|++|||||+.+|||+||++| +||.||-++-.||-..+++.-|.++|..++..++.+..
T Consensus 641 ~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~-~e~~afellk~LM~~r~~r~qy~pdm~~lq~qmyqLsr 719 (948)
T KOG4436|consen 641 DQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHM-SEENAFELLKFLMFDRGMRKQYRPDMKKLQIQMYQLSR 719 (948)
T ss_pred hhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhc-chhhHHHHHHHHHHHHhhHhhhchHHHHHHHHHHHHHH
Confidence 74 5899999999999999999999999999999999999 89999999999999888888999999999999999999
Q ss_pred HHHHhCHHHHHHHHHh
Q 023831 256 LLVKQCPRYALVYEEF 271 (276)
Q Consensus 256 Ll~~~~P~L~~hl~~~ 271 (276)
+++.+.|+||+|++++
T Consensus 720 l~hd~hrdlyn~le~~ 735 (948)
T KOG4436|consen 720 LLHDYHRDLYNHLEEN 735 (948)
T ss_pred HHHHHhHHHHHHHHhc
Confidence 9999999999999985
No 10
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=7.4e-24 Score=190.85 Aligned_cols=171 Identities=27% Similarity=0.415 Sum_probs=145.5
Q ss_pred CCCHHHHHHHHHhCCCCchHHHHHHHHHcchhhhcc-------CchHHHHHHHHHhcC------CCCchhhhhhhcCCCC
Q 023831 103 LANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKST-------VPESYYNDLTKAVEG------KVTPATKQIDHDLPRT 169 (276)
Q Consensus 103 ~~~~~~lk~l~~~GIP~~~R~~vW~~llg~~~~~~~-------~~~~~y~~l~~~~~~------~~~~~~~qI~~Dv~RT 169 (276)
.++-++|++++|.|||..+|+.+|+.++|+-....+ .....|.+++.+... ...+..+||..|+.||
T Consensus 175 ~id~~~Lr~l~w~Gvp~~~Rp~~Wkll~gylp~n~~rr~~~l~~Kr~eY~~~v~~~~~~~~~~~~~~d~~rQI~id~prm 254 (484)
T KOG1092|consen 175 IIDLEKLRKLCWNGVPSKMRPIVWKLLSGYLPPNSDRREGTLQRKRKEYVDSVVQYFDSLTNGDEDQDTWRQIPIDIPRM 254 (484)
T ss_pred cccHHHHHHHccCCCCccccCccceeeecccCcchhhhhhhHHHHHHHHHHHHHHHhccCCCccccCccccccccCCCCC
Confidence 458899999999999999999999999997433221 112346666655432 2335679999999999
Q ss_pred CCCCCCCCCchhHHHHHHHHhhhhhcCCCCCcccchhHHHHHHHHhc-------------------------CCHHHHHH
Q 023831 170 FPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVM-------------------------KTEEDAFW 224 (276)
Q Consensus 170 ~p~~~~F~~~~~~~~L~rVL~ays~~~p~iGY~QGm~~Iaa~LLl~~-------------------------~~Ee~aF~ 224 (276)
.|..++|..+.-++.+.|||..+++++|..||+||.|+++.+++.++ .-|++|||
T Consensus 255 ~p~~~l~q~~~vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~~~~iEADsyW 334 (484)
T KOG1092|consen 255 NPHIPLFQQKIVQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAENAEDIEADAYW 334 (484)
T ss_pred CccccchhhHHHHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhccHHHHhhhhhhHHH
Confidence 99999999888999999999999999999999999999999888765 15789999
Q ss_pred HHHHHHhhcCCccCcCCCchhHHHHHHHHHHHHHHhCHHHHHHHHHhhhhc
Q 023831 225 MLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRYALVYEEFLDIY 275 (276)
Q Consensus 225 ~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~Ll~~~~P~L~~hl~~~~~~~ 275 (276)
|+..|++.+ .+.|+...+|++.....++.|++..++.||+||+++..-|
T Consensus 335 ClskLLD~I--QDNYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~~gvey 383 (484)
T KOG1092|consen 335 CLSKLLDGI--QDNYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEY 383 (484)
T ss_pred HHHHHHHHh--hhhhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHH
Confidence 999999988 6899999999999999999999999999999999985443
No 11
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=99.89 E-value=1.7e-23 Score=182.24 Aligned_cols=166 Identities=28% Similarity=0.442 Sum_probs=129.9
Q ss_pred CCHHHHHHHHHhCCC--CchHHHHHHHHHcchhhhcc-------CchHHHHHHHHHhcC---------------------
Q 023831 104 ANAITLKKLIRKGIP--PVLRPKVWFSLSGAAKKKST-------VPESYYNDLTKAVEG--------------------- 153 (276)
Q Consensus 104 ~~~~~lk~l~~~GIP--~~~R~~vW~~llg~~~~~~~-------~~~~~y~~l~~~~~~--------------------- 153 (276)
.+.++|++++..|+| .++|+.+|++++|+...... .....|.........
T Consensus 23 id~kelr~~~~~g~p~~~~lR~~~WkllL~Yl~~er~~w~s~La~~R~~Y~q~i~e~v~epg~~~~~~~v~~~D~~~dhP 102 (370)
T KOG4567|consen 23 IDLKELRKLCFYGVPDDASLRPLVWKLLLGYLPPERSKWTSFLAKKRSLYKQFIEEIVDEPGKKDNSKKVDSNDTDEDHP 102 (370)
T ss_pred hhHHHHHHHhhcCCCCccchhHhHHHHHHhhcChhhhhhHHHHHHHHHHHHHHHHHhccCccccccccccccCcccccCC
Confidence 578999999999999 69999999999998432211 112334444432100
Q ss_pred -------------CCCchhhhhhhcCCCCCCCCCCCCCch-------------------------h--HHHHHHHHhhhh
Q 023831 154 -------------KVTPATKQIDHDLPRTFPGHPWLDTPD-------------------------G--HATLRRVLVGYS 193 (276)
Q Consensus 154 -------------~~~~~~~qI~~Dv~RT~p~~~~F~~~~-------------------------~--~~~L~rVL~ays 193 (276)
++++...||++||.||.|+..+|+... | .....|||..||
T Consensus 103 ls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~erilfiyA 182 (370)
T KOG4567|consen 103 LSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAAERILFIYA 182 (370)
T ss_pred CCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHHHHHHHHHh
Confidence 123456899999999999998886411 1 234578999999
Q ss_pred hcCCCCCcccchhHHHHHHHHhcC----------CHHHHHHHHHHHHhhcCCccCcC----CCchhHHHHHHHHHHHHHH
Q 023831 194 FRDSDVGYCQGLNYVAALLLLVMK----------TEEDAFWMLAVLLENVLVNDCYT----NNLSGCHVEQRVFKDLLVK 259 (276)
Q Consensus 194 ~~~p~iGY~QGm~~Iaa~LLl~~~----------~Ee~aF~~l~~l~~~~~~~~~f~----~~~~~l~~~~~~~~~Ll~~ 259 (276)
..||.|||+||||.|+|+++.++. .|++||.||+.||..+ ++.|. ...-|++..+..+..+|++
T Consensus 183 KLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMsei--rDnf~k~LDdS~~GI~~~Msr~~~~lk~ 260 (370)
T KOG4567|consen 183 KLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEI--RDNFIKTLDDSVGGIHFLMSRLSELLKK 260 (370)
T ss_pred hcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHH--HHHHHHhccccccchHHHHHHHHHHHHH
Confidence 999999999999999999999882 5789999999999987 57773 3445888889999999999
Q ss_pred hCHHHHHHHHHh
Q 023831 260 QCPRYALVYEEF 271 (276)
Q Consensus 260 ~~P~L~~hl~~~ 271 (276)
++-+||.||+..
T Consensus 261 ~D~EL~~~L~~~ 272 (370)
T KOG4567|consen 261 HDEELWRHLEEK 272 (370)
T ss_pred hhHHHHHHHHhc
Confidence 999999999854
No 12
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.89 E-value=6.4e-23 Score=190.65 Aligned_cols=162 Identities=31% Similarity=0.452 Sum_probs=135.3
Q ss_pred CCHHHHHHHHHhCCCCchHHHHHHHHHcchhhhc-cCchHHHHHHHHHhcCCCCchhhhhhhcCCCCCCCCCCCCCc--h
Q 023831 104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKS-TVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP--D 180 (276)
Q Consensus 104 ~~~~~lk~l~~~GIP~~~R~~vW~~llg~~~~~~-~~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~--~ 180 (276)
.+..++...+..|||.++|+.+|..+++...... ......|.. ...........+| +|+.||||.|..|... .
T Consensus 133 ~~~~~l~~~~~~gip~~~r~~~W~l~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~-~d~~Rt~~~~~~f~~~~~~ 208 (397)
T KOG1102|consen 133 RRPLKLSRRVLVGIPDELRGLVWQLLLYAVEESLFDSLDELYRL---QLDEPEPHESEII-RDLSRTFPAHLLFRKRYGV 208 (397)
T ss_pred ccHHHHHHHhhccccHHHHHHHHHHhcccHhhhhhhhHHHHHHH---hhccCCCchhHHH-hhccCcCcchhhhhhhcCc
Confidence 4778999999999999999999999998732211 111112221 2222334445666 9999999999999873 5
Q ss_pred hHHHHHHHHhhhhhcCCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHhhcCCccCcCCCchhHHHHHHHHHHHHHHh
Q 023831 181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQ 260 (276)
Q Consensus 181 ~~~~L~rVL~ays~~~p~iGY~QGm~~Iaa~LLl~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~Ll~~~ 260 (276)
+++.|.+||.||+.++|++||||||.++|+++|+++ .||+|||+++.+|..+. .+.|..++++++..+..++.+++..
T Consensus 209 ~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~-~ee~af~~lv~l~~~~~-~~~~~~~~~~l~~~~~~~~~l~~~~ 286 (397)
T KOG1102|consen 209 GQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYL-PEEEAFPLLVKLMKNYG-LDLLSPGFSGLQRSFRQLQRLLKEL 286 (397)
T ss_pred ccccccccchhhcccCCCcccccchhhHhhhhhccC-chhhhhhhhhhhhhccc-hhcccccCCchhhhHHHHHHHHHHh
Confidence 799999999999999999999999999999999999 59999999999999987 5666999999999999999999999
Q ss_pred CHHHHHHHHHh
Q 023831 261 CPRYALVYEEF 271 (276)
Q Consensus 261 ~P~L~~hl~~~ 271 (276)
.|+++.|+...
T Consensus 287 ~p~~~~~~~~~ 297 (397)
T KOG1102|consen 287 IPKLLDHLLPQ 297 (397)
T ss_pred Chhhhhhcccc
Confidence 99999999876
No 13
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.81 E-value=6.8e-20 Score=165.72 Aligned_cols=171 Identities=20% Similarity=0.386 Sum_probs=125.3
Q ss_pred CCCHHHHHHHH-HhCCCCchHHHHHHHHHcchhhhccCc---------hHHHHHHHHHhcCCCCc---------hhhhhh
Q 023831 103 LANAITLKKLI-RKGIPPVLRPKVWFSLSGAAKKKSTVP---------ESYYNDLTKAVEGKVTP---------ATKQID 163 (276)
Q Consensus 103 ~~~~~~lk~l~-~~GIP~~~R~~vW~~llg~~~~~~~~~---------~~~y~~l~~~~~~~~~~---------~~~qI~ 163 (276)
..+.-+|++.+ ..||..++|+.||++|+..+...++.. ...|+++.++---..++ ..-.++
T Consensus 421 iedd~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrlysmspeeh~~fwknvq~tvd 500 (781)
T KOG2224|consen 421 IEDDLKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRLYSMSPEEHIAFWKNVQFTVD 500 (781)
T ss_pred chhHHHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhheEEEEe
Confidence 34556787777 689999999999999998765444322 23466654331100111 123467
Q ss_pred hcCCCCCCCCCCCCCch--hHHHHHHHHhhhhhcCCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHhhc--------
Q 023831 164 HDLPRTFPGHPWLDTPD--GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENV-------- 233 (276)
Q Consensus 164 ~Dv~RT~p~~~~F~~~~--~~~~L~rVL~ays~~~p~iGY~QGm~~Iaa~LLl~~~~Ee~aF~~l~~l~~~~-------- 233 (276)
+||.||.+++++|...+ +.+.++|||..|+.|||.+||.|||+++.|+.|.-..+|.++||||+.||...
T Consensus 501 kdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgmsdlvapil 580 (781)
T KOG2224|consen 501 KDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMSDLVAPIL 580 (781)
T ss_pred cceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccchhhhhhhhhccchhhhhhHH
Confidence 99999999999999765 58999999999999999999998888888877776666777777777776521
Q ss_pred ---------------CCc-cCc--CCCchhHHHHHHHHHHHHHHhCHHHHHHHHHhhh
Q 023831 234 ---------------LVN-DCY--TNNLSGCHVEQRVFKDLLVKQCPRYALVYEEFLD 273 (276)
Q Consensus 234 ---------------~~~-~~f--~~~~~~l~~~~~~~~~Ll~~~~P~L~~hl~~~~~ 273 (276)
+++ .+| ++.-..+-..+..+..|++...|..|+||.++++
T Consensus 581 aevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~e 638 (781)
T KOG2224|consen 581 AEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGE 638 (781)
T ss_pred HhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCc
Confidence 001 233 4445566777888999999999999999999874
No 14
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.77 E-value=2.2e-18 Score=160.59 Aligned_cols=158 Identities=24% Similarity=0.376 Sum_probs=135.3
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHcchhhhccCchHHHHHHHHHhcCCCCchhhhhhhcCCCCCCCCCCCCCchhHHHH
Q 023831 106 AITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATL 185 (276)
Q Consensus 106 ~~~lk~l~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~L 185 (276)
...+-+..+.|+|+-+|+.+|..|++..... ...|..+-+ ..+.+..+||+.|++|+.......+++.|+++|
T Consensus 345 ~~qI~r~a~vdvpp~~R~~iW~aLL~l~e~~----~a~y~~IDk---~Ts~~tdrqievdiprchQyd~~lsSp~~~r~l 417 (725)
T KOG1093|consen 345 RLQILREAYVDVPPLYRGFIWAALLQLEENH----TAFYTLIDK---GTSHSTDRQIEVDIPRCHQYDELLSSPKGHRKL 417 (725)
T ss_pred HHHHHHHhccCCChhHhHHHHHHHhcCcccc----chhhhhhhc---CCCCcchhhhhcccchhhhcccccCCHHHHHHH
Confidence 4555666688999999999999999876432 355654432 334588999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCCcccchhHHHHHHHH-hcCCHHHHHHHHHHHHhhcCCccCcCC-CchhHHHHHHHHHHHHHHhCHH
Q 023831 186 RRVLVGYSFRDSDVGYCQGLNYVAALLLL-VMKTEEDAFWMLAVLLENVLVNDCYTN-NLSGCHVEQRVFKDLLVKQCPR 263 (276)
Q Consensus 186 ~rVL~ays~~~p~iGY~QGm~~Iaa~LLl-~~~~Ee~aF~~l~~l~~~~~~~~~f~~-~~~~l~~~~~~~~~Ll~~~~P~ 263 (276)
+|||+||+...|..-|.||+..+|++||. ++++|+-||.|+..++-+|+ +.+|.. +..-++..+..|.++++.++|+
T Consensus 418 rRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kyc-q~fflkdns~vikeyLs~f~~l~AfhDpe 496 (725)
T KOG1093|consen 418 RRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYC-QHFFLKDNSNVIKEYLSMFSQLLAFHDPE 496 (725)
T ss_pred HHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHH-HHHHhhcCchhHHHHHHHHHHHHHhcCHH
Confidence 99999999999999999999999998774 67789999999999999997 566654 5667788999999999999999
Q ss_pred HHHHHHHh
Q 023831 264 YALVYEEF 271 (276)
Q Consensus 264 L~~hl~~~ 271 (276)
|++||..+
T Consensus 497 L~qHl~~~ 504 (725)
T KOG1093|consen 497 LLQHLIDI 504 (725)
T ss_pred HHHHHHHc
Confidence 99999887
No 15
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=99.74 E-value=1.4e-18 Score=164.79 Aligned_cols=156 Identities=25% Similarity=0.420 Sum_probs=127.2
Q ss_pred HhCCCCchHHHHHHHHHcchhhhccCch--------HHHHHHHHHhcCCCC----------chhhhhhhcCCCCCCCCCC
Q 023831 114 RKGIPPVLRPKVWFSLSGAAKKKSTVPE--------SYYNDLTKAVEGKVT----------PATKQIDHDLPRTFPGHPW 175 (276)
Q Consensus 114 ~~GIP~~~R~~vW~~llg~~~~~~~~~~--------~~y~~l~~~~~~~~~----------~~~~qI~~Dv~RT~p~~~~ 175 (276)
..|+-..+|+.+|+.+.+.........+ ..|............ .....|.+||.||.+.+.+
T Consensus 175 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~qW~~~~~~~~~~~~~~~~~~~~i~~dv~rtDr~~~~ 254 (488)
T KOG2197|consen 175 SGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKLTDEYFRLKLQWSSTSPEQSPESEGYLERKSRIEKDVGRTDRSLEF 254 (488)
T ss_pred ccccccchhhhhhhhhhcccCcccccccccccccccccHhhhhhhheeccccccccccchhhhhhhhhhhccccchhhhh
Confidence 5567669999999999887554433211 123333333211111 2336799999999999999
Q ss_pred CCCchh--HHHHHHHHhhhhhcCCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHhhcCCccCcCCCchhHHHHHHHH
Q 023831 176 LDTPDG--HATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVF 253 (276)
Q Consensus 176 F~~~~~--~~~L~rVL~ays~~~p~iGY~QGm~~Iaa~LLl~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~ 253 (276)
+..... ...|..||.+|+.+|+++||||||+++.++++.++++|.+|||||+.+|++. +.-|..+..|++..+..+
T Consensus 255 ~~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de~~aFwcFv~fm~~~--~~nF~~d~~~~~~Ql~~~ 332 (488)
T KOG2197|consen 255 YEGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDEVEAFWCFVGFMDRL--RHNFRIDQSGMQTQLAQL 332 (488)
T ss_pred hhcccccCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCchHHHHHHHHHHHHH--hhcCccccccHHHHhhhh
Confidence 987777 9999999999999999999999999999999999999999999999999985 466777889999999999
Q ss_pred HHHHHHhCHHHHHHHHHh
Q 023831 254 KDLLVKQCPRYALVYEEF 271 (276)
Q Consensus 254 ~~Ll~~~~P~L~~hl~~~ 271 (276)
..+++..+|.||.||+++
T Consensus 333 ~~li~~~dp~l~~hLe~~ 350 (488)
T KOG2197|consen 333 SSLIQELDPRLYQHLEKL 350 (488)
T ss_pred hhhccccCHHHHhhcccc
Confidence 999999999999999876
No 16
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.62 E-value=1.1e-15 Score=146.97 Aligned_cols=168 Identities=23% Similarity=0.279 Sum_probs=140.7
Q ss_pred CCCHHHHHHHHHhCCCCchHHHHHHHHHcchhhhccCchHHHHHHHHHhcCC-CCchhhhhhhcCCCCCCCCCCCCCch-
Q 023831 103 LANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGK-VTPATKQIDHDLPRTFPGHPWLDTPD- 180 (276)
Q Consensus 103 ~~~~~~lk~l~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~-~~~~~~qI~~Dv~RT~p~~~~F~~~~- 180 (276)
..+..+|+.+|.+|||+..|..+|..++.........-...|+++....... .....-.|.+|+.||.|.|.+|....
T Consensus 171 ~~s~~~l~e~Ve~~~p~~frli~~qlLssatd~~q~~I~e~~sdl~~~s~~~Ek~~~~~~Irrdi~~~~~eh~~fke~~s 250 (948)
T KOG4436|consen 171 KKSLHKLKELVEGGIPMHFRLIRWQLLSSATDREQALIFEDYSDLAPCSSQQEKELHIGIIRRDIERTYPEHYFFKEQSS 250 (948)
T ss_pred hhchhhhHHHHhcCCchHHHHHHHHHhcccccchhhHHHHHHHHHhhhcchhhhhHHHHHHHHHhhccCcceeeeccCcc
Confidence 4567899999999999999999999999876543211123455555432111 11233489999999999999998632
Q ss_pred --------hHHHHHHHHhhhhhcCCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHhhcCCccCcCCCchhHHHHHHH
Q 023831 181 --------GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRV 252 (276)
Q Consensus 181 --------~~~~L~rVL~ays~~~p~iGY~QGm~~Iaa~LLl~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~ 252 (276)
+++.|+++.++|+..+-++|||||=|++++.+++.+ ++|.||..++.+|..+..+..+.+.+..+...+..
T Consensus 251 ~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~-~~E~assv~~~lm~~~rl~~l~kpe~~~l~~~~~q 329 (948)
T KOG4436|consen 251 TVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQM-PVEEASSVKVQLMILYRLRELSKPEMEPLGLCMFQ 329 (948)
T ss_pred CCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcC-cHHHHHHHHHHHHHhhcccccCCcccchhHHHHHh
Confidence 499999999999999999999999999999999999 69999999999999999999999999999999999
Q ss_pred HHHHHHHhCH-HHHHHHHHh
Q 023831 253 FKDLLVKQCP-RYALVYEEF 271 (276)
Q Consensus 253 ~~~Ll~~~~P-~L~~hl~~~ 271 (276)
++...+...| .|+.|+.+.
T Consensus 330 ~e~~~q~~sp~dl~sH~~eq 349 (948)
T KOG4436|consen 330 LECTNQDQSPMDLFSHFPEQ 349 (948)
T ss_pred hcccccccchhHHhhccccc
Confidence 9999999999 999999754
No 17
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.41 E-value=4.8e-13 Score=118.48 Aligned_cols=158 Identities=16% Similarity=0.174 Sum_probs=120.6
Q ss_pred CHHHHHHHHH--hC-CCCchHHHHHHHHHcchhhhccCchHHHHHHHHHhcCCCCchhhhhhhcCCCCCCCCCC---CCC
Q 023831 105 NAITLKKLIR--KG-IPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPW---LDT 178 (276)
Q Consensus 105 ~~~~lk~l~~--~G-IP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~RT~p~~~~---F~~ 178 (276)
+-+.|+.... .| +-+++|+.+|..|+|..-.... ...+.+..+ ..+...|+..|++|+|...+. +..
T Consensus 47 dv~~Lr~i~l~p~Glv~dslRk~vWp~L~~~~~n~~~--~~~~~~~~q-----~hkd~nQV~LDv~RSl~rfppg~p~~~ 119 (395)
T KOG2595|consen 47 DVDALRYIGLSPGGLVNDSLRKDVWPELLALNINHLD--ATSTLTPVQ-----KHKDYNQVILDVERSLGRFPPGIPKEL 119 (395)
T ss_pred cHHHHHHhccCCCccccHHHHHHHHHHHhccccCCCc--ccccCChhh-----hCcccceEEEehhhhhccCCCCCCHHH
Confidence 4556666553 33 5779999999999997533221 112222222 256789999999999855432 111
Q ss_pred c-hhHHHHHHHHhhhhhcCCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHhhcCCccCcCCCchhHHHHHHHHHHHH
Q 023831 179 P-DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLL 257 (276)
Q Consensus 179 ~-~~~~~L~rVL~ays~~~p~iGY~QGm~~Iaa~LLl~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~Ll 257 (276)
+ .-++.|..++......+|+..|.||.++||.+||+++ .|.+|+-.+..|-..++ ++|..+++.+....+..+..++
T Consensus 120 R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~-gE~~Al~l~E~L~~~~l-rdfM~~Tld~t~~qL~~i~~iI 197 (395)
T KOG2595|consen 120 RLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVV-GELEALSLMEELSTLHL-RDFMLPTLDFTVRQLRLISPII 197 (395)
T ss_pred HHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhh-hhHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2366666666666678899999999999999999999 69999999999987664 8999999999999999999999
Q ss_pred HHhCHHHHHHHHHh
Q 023831 258 VKQCPRYALVYEEF 271 (276)
Q Consensus 258 ~~~~P~L~~hl~~~ 271 (276)
+..+|+||+.|++-
T Consensus 198 k~~nP~Ly~~l~~a 211 (395)
T KOG2595|consen 198 KEVNPELYQFLQSA 211 (395)
T ss_pred hhcChHHHHHHHhh
Confidence 99999999999864
No 18
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.4e-12 Score=122.13 Aligned_cols=116 Identities=28% Similarity=0.391 Sum_probs=88.1
Q ss_pred chhhhhhhcCCCCCCCC-CCCCCchhHHHHHHHHhhhhhcCCCCCcccchhHHHHHHHHhcC------------------
Q 023831 157 PATKQIDHDLPRTFPGH-PWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK------------------ 217 (276)
Q Consensus 157 ~~~~qI~~Dv~RT~p~~-~~F~~~~~~~~L~rVL~ays~~~p~iGY~QGm~~Iaa~LLl~~~------------------ 217 (276)
+..+.|+.||.||||.| .+|+.+.-+..|++||..|+..+|.+||-|||+.+.|++++++-
T Consensus 103 EL~~~i~qDvsRtfPe~~~fFqs~~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~se~~~~~l~ 182 (625)
T KOG1091|consen 103 ELEKTIDQDVSRTFPEHSLFFQSPEVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVSESLFDKLG 182 (625)
T ss_pred HHHHhhcchhhccCcchhhhhcCchhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHHHhhhhhcC
Confidence 45789999999999999 88988888999999999999999999999999999999998761
Q ss_pred -CHHH-----------HH--HHHHHHHhh--cC--------------------CccCcCCCchhHHHHHHHHHHHHHHhC
Q 023831 218 -TEED-----------AF--WMLAVLLEN--VL--------------------VNDCYTNNLSGCHVEQRVFKDLLVKQC 261 (276)
Q Consensus 218 -~Ee~-----------aF--~~l~~l~~~--~~--------------------~~~~f~~~~~~l~~~~~~~~~Ll~~~~ 261 (276)
.|.+ ++ -+++.+|.. +. +.+-+..+.+-+-.....+..+|.+.+
T Consensus 183 f~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~lL~~~D 262 (625)
T KOG1091|consen 183 FEERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHLLAKVD 262 (625)
T ss_pred cchhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhhhhhcc
Confidence 1111 11 123333321 10 011123345566667788899999999
Q ss_pred HHHHHHHHHhh
Q 023831 262 PRYALVYEEFL 272 (276)
Q Consensus 262 P~L~~hl~~~~ 272 (276)
+.||.||.++.
T Consensus 263 ~~Lh~HL~~l~ 273 (625)
T KOG1091|consen 263 KSLHSHLVELG 273 (625)
T ss_pred HHHHHHHHhcC
Confidence 99999999874
No 19
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=2.8e-06 Score=74.80 Aligned_cols=162 Identities=23% Similarity=0.303 Sum_probs=117.6
Q ss_pred CHHHHHHHHHhCC---CCchHHHHHHHHHcchhhhccCc-hHHHHHHHHHhcCCCCchhhhhhhcCCCCC-CCCCCCCCc
Q 023831 105 NAITLKKLIRKGI---PPVLRPKVWFSLSGAAKKKSTVP-ESYYNDLTKAVEGKVTPATKQIDHDLPRTF-PGHPWLDTP 179 (276)
Q Consensus 105 ~~~~lk~l~~~GI---P~~~R~~vW~~llg~~~~~~~~~-~~~y~~l~~~~~~~~~~~~~qI~~Dv~RT~-p~~~~F~~~ 179 (276)
.-.+||++.+.|- ...+|+.|+..++.-...+...| ...|.+++-..-++.++.--.+..-|+.|- |.. ..+.
T Consensus 31 elqelkqlarqgywaqshalrgkvyqrlirdipcrtvtpdasvysdivgkivgkhsssclplpefvdntqvpsy--clna 108 (559)
T KOG2801|consen 31 ELQELKQLARQGYWAQSHALRGKVYQRLIRDIPCRTVTPDASVYSDIVGKIVGKHSSSCLPLPEFVDNTQVPSY--CLNA 108 (559)
T ss_pred hHHHHHHHHhcchHHhhhhhhhHHHHHHHhcCCccccCCchhHHHHHHHHHhccCCcccccchhhcccCcCchh--hhcC
Confidence 4578999999995 77899999999987554443333 356888876654443332222222233331 221 2224
Q ss_pred hhHHHHHHHHhhhhhcCCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-ccCcCCCchhHHHHHHHHHHHHH
Q 023831 180 DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLV-NDCYTNNLSGCHVEQRVFKDLLV 258 (276)
Q Consensus 180 ~~~~~L~rVL~ays~~~p~iGY~QGm~~Iaa~LLl~~~~Ee~aF~~l~~l~~~~~~-~~~f~~~~~~l~~~~~~~~~Ll~ 258 (276)
.|.-..++||.+.+...|+|.+|+.+..++|+||.+.-+|+++|--.+.|+....+ +.+...++..+...+..|.+|+.
T Consensus 109 rgegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacrilacndpgrrlidqsflafesscmtfgdlvn 188 (559)
T KOG2801|consen 109 RGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRRLIDQSFLAFESSCMTFGDLVN 188 (559)
T ss_pred cCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheeeeecCcchhhhhhHHHHHHhhhhhHHHHHH
Confidence 46678899999999999999999999999999999988999999988888754332 45566777788888899999999
Q ss_pred HhCHHHHHHH
Q 023831 259 KQCPRYALVY 268 (276)
Q Consensus 259 ~~~P~L~~hl 268 (276)
+++...|+.+
T Consensus 189 kycqaahklm 198 (559)
T KOG2801|consen 189 KYCQAAHKLM 198 (559)
T ss_pred HHHHHHHHHh
Confidence 9988777655
No 20
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=96.91 E-value=5.5e-05 Score=70.82 Aligned_cols=121 Identities=19% Similarity=0.233 Sum_probs=88.5
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHcchhhh------ccCc---hHHHHHHHHHhcCCCCchhhhhhhcCCCCCCCCCCCC
Q 023831 107 ITLKKLIRKGIPPVLRPKVWFSLSGAAKKK------STVP---ESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLD 177 (276)
Q Consensus 107 ~~lk~l~~~GIP~~~R~~vW~~llg~~~~~------~~~~---~~~y~~l~~~~~~~~~~~~~qI~~Dv~RT~p~~~~F~ 177 (276)
.-+..-+++|+....|+.+|+...+..... .++. ...|+..+.... ......|++|+.|...+..+|.
T Consensus 549 ~~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~~---~~~~~~~~kd~e~~~~~~~~fs 625 (813)
T KOG1648|consen 549 RVLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITLF---RANLHRIDKDVERCDRNLMFFS 625 (813)
T ss_pred HHHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHHH---hhheeeecchhhhCcchheeec
Confidence 444555588999999999999987753211 1111 123554333222 2346789999999999999999
Q ss_pred CchhHHHHHHHHhhhhhcCCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023831 178 TPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLE 231 (276)
Q Consensus 178 ~~~~~~~L~rVL~ays~~~p~iGY~QGm~~Iaa~LLl~~~~Ee~aF~~l~~l~~ 231 (276)
+.++.+. +++...|...|-+-||.|||.++.++++.-++||...--|+.-+|-
T Consensus 626 ~~~~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s~~~~ 678 (813)
T KOG1648|consen 626 NKDNLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSLLML 678 (813)
T ss_pred CCcchhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCcHHHH
Confidence 8888887 8999999999999999999999999999888776655555554443
No 21
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=95.96 E-value=0.02 Score=53.61 Aligned_cols=136 Identities=18% Similarity=0.273 Sum_probs=88.7
Q ss_pred CCCCchHHHHHHHHHcchhhhccCchHHHHHHHHHhcCCCCchhhhhhhcCCCCCCCCCCCCCc---hhHHHHHHHHhhh
Q 023831 116 GIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP---DGHATLRRVLVGY 192 (276)
Q Consensus 116 GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~---~~~~~L~rVL~ay 192 (276)
|=|.+. |+.++|+..+. ++-..+..+. +-+...+|..|-.|---.. --..+ .-...|..++.-|
T Consensus 36 G~~~~~----W~~~L~V~~K~--d~l~~wd~iy------dLp~Q~~lr~DC~~~~d~l-~n~ee~~v~vv~dlES~iTfY 102 (669)
T KOG3636|consen 36 GNDKSD----WMRLLGVSMKP--NPLDDWDQIY------DLPNQCALRNDCRKLADGL-KNKEEDKVPVVSDLESFITFY 102 (669)
T ss_pred CCCHHH----HHHHhcccCCC--CchhhHHHHh------CCchhhHHHHHHHHHHhhc-CCchhhccchhHhhhhHhhhh
Confidence 555555 99999986543 2223455443 2355566777754332111 01111 1245788888777
Q ss_pred hhcCCCCCcccchhHHHH---HHHHhcCCHHHHHHHHHHHHhhcCCccCcCCCchhHHHHHHHHHHHHHHhCHHHHHHHH
Q 023831 193 SFRDSDVGYCQGLNYVAA---LLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRYALVYE 269 (276)
Q Consensus 193 s~~~p~iGY~QGm~~Iaa---~LLl~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~Ll~~~~P~L~~hl~ 269 (276)
+. +.++.|....+.|.- ++++.+ +-.+.|-||-+++++|.|+++=..+ .-+..|..||+.++|+|..||.
T Consensus 103 CK-~Rn~~Y~~d~gWi~lL~pl~~L~l-prsd~fN~F~ai~~kYIPkdcrpkg-----~~Fh~FRLLlqYHdPelc~~Ld 175 (669)
T KOG3636|consen 103 CK-KRNMDYIKDIGWITLLEPLLLLNL-PRSDEFNVFFAITTKYIPKDCRPKG-----QIFHLFRLLLQYHDPELCNHLD 175 (669)
T ss_pred hh-ccCCcccccccHHHHHHHHHHhcC-CcchhhhhhHhhhhcccCCCCCCCC-----ccchHHHHHHHhcCHHHhhhhh
Confidence 65 566788887776554 345556 4689999999999999887765554 2346789999999999999997
Q ss_pred Hh
Q 023831 270 EF 271 (276)
Q Consensus 270 ~~ 271 (276)
..
T Consensus 176 tk 177 (669)
T KOG3636|consen 176 TK 177 (669)
T ss_pred cc
Confidence 54
No 22
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=85.24 E-value=0.3 Score=45.69 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 023831 207 YVAALLLLVMKTEEDAFWMLAVLLENV 233 (276)
Q Consensus 207 ~Iaa~LLl~~~~Ee~aF~~l~~l~~~~ 233 (276)
+++|++|.-.-+|.++||||+.||.+.
T Consensus 574 dlvapilaevldesdtfwcfvglmqna 600 (781)
T KOG2224|consen 574 DLVAPILAEVLDESDTFWCFVGLMQNA 600 (781)
T ss_pred hhhhhHHHhhhccccchhhhhhhhcce
Confidence 678877765458999999999999864
No 23
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=50.08 E-value=6 Score=38.33 Aligned_cols=30 Identities=37% Similarity=0.505 Sum_probs=24.2
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHcchhhh
Q 023831 107 ITLKKLIRKGIPPVLRPKVWFSLSGAAKKK 136 (276)
Q Consensus 107 ~~lk~l~~~GIP~~~R~~vW~~llg~~~~~ 136 (276)
+.++....+||++++|+.+|..|+|.+...
T Consensus 68 ~~l~~i~~~gi~psir~evw~fll~~y~~~ 97 (488)
T KOG2197|consen 68 KLLKLIILGGIDPSIRGEVWEFLLGCYDLD 97 (488)
T ss_pred hhheeeecCCCCCcccchhHHHHhcccCCC
Confidence 445555589999999999999999986643
No 24
>TIGR02433 lysidine_TilS_C tRNA(Ile)-lysidine synthetase, C-terminal domain. TIGRFAMs model TIGR02432 describes the family of the N-terminal domain of tRNA(Ile)-lysidine synthetase. This family (TIGR02433) describes a small C-terminal domain of about 50 residues present in about half the members of family TIGR02432,and in no other protein. Characterized examples of tRNA(Ile)-lysidine synthetase from E. coli and Bacillus subtilis both contain this domain.
Probab=37.36 E-value=4.8 Score=25.29 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=20.0
Q ss_pred CHHHHHHHH-HhCCCCchHHHHHHHH
Q 023831 105 NAITLKKLI-RKGIPPVLRPKVWFSL 129 (276)
Q Consensus 105 ~~~~lk~l~-~~GIP~~~R~~vW~~l 129 (276)
.+++||++. ..+||+..|..+|.++
T Consensus 19 ~~k~lkk~~~e~kiP~~~R~~~pll~ 44 (47)
T TIGR02433 19 GSKKLKKLFIDAKVPPWLRDRIPLLF 44 (47)
T ss_pred CCchHHHHHHHcCCCHHHHcCccEEE
Confidence 467899988 6899999998866543
No 25
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=32.39 E-value=35 Score=19.00 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=10.6
Q ss_pred CCcccchhHHHHHHH
Q 023831 199 VGYCQGLNYVAALLL 213 (276)
Q Consensus 199 iGY~QGm~~Iaa~LL 213 (276)
.||.||+.+..--.|
T Consensus 3 sgyiqgipdflkgyl 17 (31)
T PF08109_consen 3 SGYIQGIPDFLKGYL 17 (31)
T ss_pred cccccccHHHHHHHH
Confidence 489999887655444
No 26
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=30.81 E-value=12 Score=27.51 Aligned_cols=45 Identities=29% Similarity=0.362 Sum_probs=29.0
Q ss_pred CHHHHHHHHH---hCCCCchHHHHHHHHHcchhhhccCchHHHHHHHH
Q 023831 105 NAITLKKLIR---KGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTK 149 (276)
Q Consensus 105 ~~~~lk~l~~---~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~ 149 (276)
...-++++.+ +-.|+++|...|.-++-+.-...+.....|+.|.+
T Consensus 26 ~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lre 73 (91)
T PF12829_consen 26 NNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLRE 73 (91)
T ss_pred hhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHHH
Confidence 4455566664 55899999999998876532222222345777765
No 27
>PF08189 Meleagrin: Meleagrin/Cygnin family; InterPro: IPR012573 This family consists of meleagrin and cygnin basic peptides that are isolated from turkey and black swan respectively. Both peptides are low in molecular weight and contain three disulphide bonds with high concentrations of aromatic residues. These peptides show similarity to transferrins and probably play some vital role in avian eggs but the exact function is still unknown [].
Probab=26.20 E-value=28 Score=20.92 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=8.8
Q ss_pred hcCCCCCcccc
Q 023831 194 FRDSDVGYCQG 204 (276)
Q Consensus 194 ~~~p~iGY~QG 204 (276)
.|.|.+|||-.
T Consensus 4 kycpkiGYCS~ 14 (39)
T PF08189_consen 4 KYCPKIGYCSS 14 (39)
T ss_pred hhCcccceecc
Confidence 47899999954
No 28
>COG5460 Uncharacterized conserved protein [Function unknown]
Probab=24.59 E-value=59 Score=23.10 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=17.3
Q ss_pred cccchhHHHHHHHHhcCCHHHHHH
Q 023831 201 YCQGLNYVAALLLLVMKTEEDAFW 224 (276)
Q Consensus 201 Y~QGm~~Iaa~LLl~~~~Ee~aF~ 224 (276)
|.||+++-.|++.--+.+-+++-|
T Consensus 51 YNQGi~da~a~i~ekl~d~te~l~ 74 (82)
T COG5460 51 YNQGIKDARAVIEEKLADMTEELF 74 (82)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHH
Confidence 899999999998876644344333
Done!