Query 023831
Match_columns 276
No_of_seqs 270 out of 1423
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 13:30:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023831.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023831hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qq8_A TBC1 domain family memb 100.0 1.5E-39 5E-44 296.0 12.4 168 100-271 32-222 (334)
2 3qye_A TBC1 domain family memb 100.0 9.1E-39 3.1E-43 290.4 17.5 163 104-271 47-217 (331)
3 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 8.2E-39 2.8E-43 288.3 13.7 160 105-271 22-183 (310)
4 2qfz_A TBC1 domain family memb 100.0 1.5E-37 5.2E-42 283.9 13.4 164 105-271 39-238 (345)
5 1fkm_A Protein (GYP1P), ORF YO 100.0 6.9E-37 2.4E-41 284.2 16.2 166 104-271 21-225 (396)
6 4hl4_A TBC1 domain family memb 100.0 3.3E-35 1.1E-39 262.6 7.3 159 104-271 32-197 (292)
7 3qwl_A TBC1 domain family memb 99.9 4.2E-22 1.4E-26 177.4 7.6 153 103-272 37-197 (294)
8 1erd_A Pheromone ER-2; NMR {Eu 33.2 12 0.00042 21.2 0.6 17 194-210 12-28 (40)
9 1dxs_A P53-like transcription 24.2 69 0.0024 22.0 3.2 25 109-133 41-65 (80)
10 2js3_A Uncharacterized protein 21.1 26 0.00088 24.0 0.5 11 200-210 17-27 (96)
No 1
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-39 Score=296.04 Aligned_cols=168 Identities=22% Similarity=0.358 Sum_probs=144.4
Q ss_pred ccCCCCHHHHHHHHHhCCCCchHHHHHHHHHcchhhhccCchHHHHHHHHHhcC----------------------CCCc
Q 023831 100 LSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEG----------------------KVTP 157 (276)
Q Consensus 100 ~~~~~~~~~lk~l~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~----------------------~~~~ 157 (276)
|+...++++||+++++|||+++|+.||+.++|+.. ....+.|+.+++.... ...+
T Consensus 32 w~~~~~~~~lr~l~~~GIP~~lR~~vW~~llg~~~---~~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 108 (334)
T 2qq8_A 32 WETMWCSRKVRDLWWQGIPPSVRGKVWSLAIGNEL---NITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADREA 108 (334)
T ss_dssp CC--CCCHHHHHHHHTCCCHHHHHHHHHHHHCCTT---CCCHHHHHHHHHHHHHHC----------------------CC
T ss_pred HHhccChHHHHHHHHCCCCHHHHHHHHHHHhCCcc---ccCHHHHHHHHHHHHHHHHHhccccccCcccccccccccchh
Confidence 33345789999999999999999999999999852 1224567776543210 0135
Q ss_pred hhhhhhhcCCCCCCCCCCCCCc-hhHHHHHHHHhhhhhcCCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHhhcCCc
Q 023831 158 ATKQIDHDLPRTFPGHPWLDTP-DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVN 236 (276)
Q Consensus 158 ~~~qI~~Dv~RT~p~~~~F~~~-~~~~~L~rVL~ays~~~p~iGY~QGm~~Iaa~LLl~~~~Ee~aF~~l~~l~~~~~~~ 236 (276)
..+||++||.||||++++|... .+++.|+|||.||+.+||++|||||||+|||+||+++ +|++|||||++||+++.+.
T Consensus 109 ~~~~I~~Dv~RT~p~~~~F~~~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~~~~~l~~~~~~~ 187 (334)
T 2qq8_A 109 SLELIKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFIAFSNLLNKPCQM 187 (334)
T ss_dssp HHHHHHHHHHTSSGGGCSSSTTSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHhhcCCCchhhcCCCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHHHHHHHHHhhhHH
Confidence 6789999999999999999875 4799999999999999999999999999999999999 7999999999999987667
Q ss_pred cCcCCCchhHHHHHHHHHHHHHHhCHHHHHHHHHh
Q 023831 237 DCYTNNLSGCHVEQRVFKDLLVKQCPRYALVYEEF 271 (276)
Q Consensus 237 ~~f~~~~~~l~~~~~~~~~Ll~~~~P~L~~hl~~~ 271 (276)
++|..++++++..+.+|+.||+.++|+||+||+++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~ 222 (334)
T 2qq8_A 188 AFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKN 222 (334)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHT
T ss_pred hccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHc
Confidence 89999999999999999999999999999999987
No 2
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=9.1e-39 Score=290.39 Aligned_cols=163 Identities=31% Similarity=0.498 Sum_probs=147.1
Q ss_pred CCHHHHHHHHHhCCCCchHHHHHHHHHcchhhhccC------chHHHHHHHHHhcCCCCchhhhhhhcCCCCCCCCCCCC
Q 023831 104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTV------PESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLD 177 (276)
Q Consensus 104 ~~~~~lk~l~~~GIP~~~R~~vW~~llg~~~~~~~~------~~~~y~~l~~~~~~~~~~~~~qI~~Dv~RT~p~~~~F~ 177 (276)
.+.++|++++++|||+++|+.||+.++|+.....+. ..+.|.++.+. ..+..++|++||+||||++++|.
T Consensus 47 ~~~~~l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~~~~~~~~~~~Y~~l~~~----~~~~~~~I~~Dv~Rt~~~~~~f~ 122 (331)
T 3qye_A 47 FDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKELLKQ----LTSQQHAILIDLGRTFPTHPYFS 122 (331)
T ss_dssp CCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHCCCCSSSCCCCCCHHHHTTS----CCTTHHHHHHHHTTSSTTSTTTC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHhCcchhhhcchhhhhhchHHHHHHHHh----cCCchhHHHHhhcccCCCchhhc
Confidence 478999999999999999999999999986643221 23568887654 34567999999999999999999
Q ss_pred Cc--hhHHHHHHHHhhhhhcCCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHhhcCCccCcCCCchhHHHHHHHHHH
Q 023831 178 TP--DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKD 255 (276)
Q Consensus 178 ~~--~~~~~L~rVL~ays~~~p~iGY~QGm~~Iaa~LLl~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~ 255 (276)
.+ .+++.|+|||.||+.+||++|||||||+|||+||+++ +|++|||||++||+++.++++|.+++++++..+.+|+.
T Consensus 123 ~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (331)
T 3qye_A 123 AQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSR 201 (331)
T ss_dssp STTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHH
Confidence 76 6899999999999999999999999999999999999 79999999999999987789999999999999999999
Q ss_pred HHHHhCHHHHHHHHHh
Q 023831 256 LLVKQCPRYALVYEEF 271 (276)
Q Consensus 256 Ll~~~~P~L~~hl~~~ 271 (276)
||+.++|+||+||+++
T Consensus 202 ll~~~~p~L~~hL~~~ 217 (331)
T 3qye_A 202 LLHDYHRDLYNHLEEH 217 (331)
T ss_dssp HHHHHCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999999986
No 3
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.2e-39 Score=288.26 Aligned_cols=160 Identities=32% Similarity=0.592 Sum_probs=144.6
Q ss_pred CHHHHHHHHHhCCCCchHHHHHHHHHcchhhhccCchHHHHHHHHHhcCCCCchhhhhhhcCCCCCCCCCCCCCc--hhH
Q 023831 105 NAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP--DGH 182 (276)
Q Consensus 105 ~~~~lk~l~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~--~~~ 182 (276)
++++|++++++|||+++|+.||+.++|+...... ...|..+++ ..++..++|++||+||||++++|..+ .++
T Consensus 22 ~~~~l~~l~~~GIP~~lR~~vW~~llg~~~~~~~--~~~Y~~l~~----~~~~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~ 95 (310)
T 3hzj_A 22 RPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQAM--LDRYRILIT----KDSAQESVITRDIHRTFPAHDYFKDTGGDGQ 95 (310)
T ss_dssp CCTTHHHHHHHCCCGGGHHHHHHHHTTCCCCHHH--HHHHHHHTT----SCCTTHHHHHHHHTTSSTTSTTTSSTTSHHH
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHCCCcchhH--HHHHHHHHh----ccCCcHHHHHHHHHhhCCCchhhcCCCchhH
Confidence 6789999999999999999999999998643211 245776643 34677899999999999999999976 579
Q ss_pred HHHHHHHhhhhhcCCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHhhcCCccCcCCCchhHHHHHHHHHHHHHHhCH
Q 023831 183 ATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCP 262 (276)
Q Consensus 183 ~~L~rVL~ays~~~p~iGY~QGm~~Iaa~LLl~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~Ll~~~~P 262 (276)
+.|+|||.||+.+||++|||||||+|||+||+++ +|++|||||+++|+++.++++|.+++++++..+.+++.+|+.++|
T Consensus 96 ~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p 174 (310)
T 3hzj_A 96 ESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLP 174 (310)
T ss_dssp HHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999999999999999 799999999999999877999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 023831 263 RYALVYEEF 271 (276)
Q Consensus 263 ~L~~hl~~~ 271 (276)
+||+||+++
T Consensus 175 ~L~~hL~~~ 183 (310)
T 3hzj_A 175 DLHSHFSDL 183 (310)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999999986
No 4
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=1.5e-37 Score=283.90 Aligned_cols=164 Identities=23% Similarity=0.426 Sum_probs=142.8
Q ss_pred CHHHHHHHHHhCCCCchHHHHHHHHHcchhhhc-------cCchHHHHHHHHHhcC-----CCCchhhhhhhcCCCCCCC
Q 023831 105 NAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKS-------TVPESYYNDLTKAVEG-----KVTPATKQIDHDLPRTFPG 172 (276)
Q Consensus 105 ~~~~lk~l~~~GIP~~~R~~vW~~llg~~~~~~-------~~~~~~y~~l~~~~~~-----~~~~~~~qI~~Dv~RT~p~ 172 (276)
+.++||+++++|||+++|+.||+.++|+..... ......|.+++++... ...+..+||++||.||+|+
T Consensus 39 d~~~Lr~l~~~GiP~~~R~~vW~~llg~~p~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~I~~Dv~RT~p~ 118 (345)
T 2qfz_A 39 DLEELRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRNDEVHQDTYRQIHIDIPRMSPE 118 (345)
T ss_dssp CHHHHHHHHTTCCCGGGHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHGGGCSCH
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHhCcccCCc
Confidence 789999999999999999999999999743211 1113578888876422 1335789999999999999
Q ss_pred CCCCCCchhHHHHHHHHhhhhhcCCCCCcccchhHHHHHHHHhcC------------------------CHHHHHHHHHH
Q 023831 173 HPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK------------------------TEEDAFWMLAV 228 (276)
Q Consensus 173 ~~~F~~~~~~~~L~rVL~ays~~~p~iGY~QGm~~Iaa~LLl~~~------------------------~Ee~aF~~l~~ 228 (276)
++|+.+.+++.|.|||.||+.+||++|||||||+|||+||+++. +|++|||||++
T Consensus 119 -~~F~~~~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~ 197 (345)
T 2qfz_A 119 -ALILQPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSK 197 (345)
T ss_dssp -HHHTSHHHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred -cccCCchHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 99998889999999999999999999999999999999998752 28999999999
Q ss_pred HHhhcCCccCcCCCchhHHHHHHHHHHHHHHhCHHHHHHHHHh
Q 023831 229 LLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRYALVYEEF 271 (276)
Q Consensus 229 l~~~~~~~~~f~~~~~~l~~~~~~~~~Ll~~~~P~L~~hl~~~ 271 (276)
||+++ +++|..+++|++..+.+|+.||+.++|+||+||+++
T Consensus 198 lm~~~--~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~ 238 (345)
T 2qfz_A 198 LLDGI--QDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQH 238 (345)
T ss_dssp HHHTS--GGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHT
T ss_pred HHHcc--ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99986 689999999999999999999999999999999986
No 5
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=6.9e-37 Score=284.19 Aligned_cols=166 Identities=27% Similarity=0.427 Sum_probs=145.6
Q ss_pred CCHHHHHHHHHhCCCCchHHHHHHHHHcchhhhcc-------CchHHHHHHHHHhcC----CCCchhhhhhhcCCCCCCC
Q 023831 104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKST-------VPESYYNDLTKAVEG----KVTPATKQIDHDLPRTFPG 172 (276)
Q Consensus 104 ~~~~~lk~l~~~GIP~~~R~~vW~~llg~~~~~~~-------~~~~~y~~l~~~~~~----~~~~~~~qI~~Dv~RT~p~ 172 (276)
.+.++||+++++|||+.+|+.||+.++|+...... .....|.+++++... ...+..+||++||.||||+
T Consensus 21 ~d~~~Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~qI~~Dv~RT~p~ 100 (396)
T 1fkm_A 21 INQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNPH 100 (396)
T ss_dssp CCHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSCSTHHHHHHHHHHHGGGSSTT
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHhhhhCCC
Confidence 37899999999999999999999999998532211 113578888876432 2345778999999999999
Q ss_pred CCCCCCchhHHHHHHHHhhhhhcCCCCCcccchhHHHHHHHHhcC---------------------C-------HHHHHH
Q 023831 173 HPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK---------------------T-------EEDAFW 224 (276)
Q Consensus 173 ~~~F~~~~~~~~L~rVL~ays~~~p~iGY~QGm~~Iaa~LLl~~~---------------------~-------Ee~aF~ 224 (276)
+++|+.+.+++.|.|||.||+.+||++|||||||+|||+||+++. + |++|||
T Consensus 101 ~~~F~~~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~ 180 (396)
T 1fkm_A 101 IPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFW 180 (396)
T ss_dssp SGGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHH
T ss_pred cccccCchHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHH
Confidence 999999889999999999999999999999999999999998641 1 899999
Q ss_pred HHHHHHhhcCCccCcCCCchhHHHHHHHHHHHHHHhCHHHHHHHHHh
Q 023831 225 MLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRYALVYEEF 271 (276)
Q Consensus 225 ~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~Ll~~~~P~L~~hl~~~ 271 (276)
||++||+++ +++|..+++|++..+.+|+.||+.++|+||+||+++
T Consensus 181 ~f~~lm~~~--~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~ 225 (396)
T 1fkm_A 181 CLTKLLEQI--TDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNE 225 (396)
T ss_dssp HHHHHHGGG--GGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHT
T ss_pred HHHHHHHHH--HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999985 789999999999999999999999999999999987
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=3.3e-35 Score=262.64 Aligned_cols=159 Identities=15% Similarity=0.182 Sum_probs=137.1
Q ss_pred CCHHHHHHHHHhC---CCCchHHHHHHHHHcchhhhccCchHHHHHHHHHhcCCCCchhhhhhhcCCCCCCCCCCCCCc-
Q 023831 104 ANAITLKKLIRKG---IPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP- 179 (276)
Q Consensus 104 ~~~~~lk~l~~~G---IP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~- 179 (276)
.+.++||++++.| +|+++|+.||+.++|+....... .|..... ..++..+||++||+||||+++.|...
T Consensus 32 ~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~---~~~~~~~----~~~~~~~qI~~Dv~RT~~~~~~~~~~~ 104 (292)
T 4hl4_A 32 TDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPP---ISGKNLR----QMSKDYQQVLLDVRRSLRRFPPGMPEE 104 (292)
T ss_dssp CCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCS---CCCTTHH----HHCTTHHHHHHHHHTTGGGSCTTSCHH
T ss_pred ccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCC---chhhhhc----ccchhHHHHHHhhhhhhhhccCCCCHH
Confidence 4789999999754 89999999999999987654322 2322211 13578999999999999999998753
Q ss_pred ---hhHHHHHHHHhhhhhcCCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHhhcCCccCcCCCchhHHHHHHHHHHH
Q 023831 180 ---DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDL 256 (276)
Q Consensus 180 ---~~~~~L~rVL~ays~~~p~iGY~QGm~~Iaa~LLl~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~L 256 (276)
.+++.|.|||.||+.+||++|||||||+|||+||+++ +|++|||||+++|+..+ +++|.+++++++..+.+++.+
T Consensus 105 ~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF~~l~~l~~~~l-~~~~~~~~~~~~~~~~~l~~l 182 (292)
T 4hl4_A 105 QREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVV-GERLATSLVEKLSTHHL-RDFMDPTMDNTKHILNYLMPI 182 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHHHHHHHHHHTTT-TGGGCSSSCTTTGGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHHHHHHHHHHHHH-HHhcccchHHHHHHHHHHHHH
Confidence 3688999999999999999999999999999999999 79999999999999764 899999999999999999999
Q ss_pred HHHhCHHHHHHHHHh
Q 023831 257 LVKQCPRYALVYEEF 271 (276)
Q Consensus 257 l~~~~P~L~~hl~~~ 271 (276)
|+.++|+||+||+++
T Consensus 183 l~~~~P~L~~hL~~~ 197 (292)
T 4hl4_A 183 IDQVNPELHDFMQSA 197 (292)
T ss_dssp HHHHCHHHHHHHC-C
T ss_pred HHHHCHHHHHHHHHc
Confidence 999999999999875
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=99.85 E-value=4.2e-22 Score=177.43 Aligned_cols=153 Identities=14% Similarity=0.146 Sum_probs=107.2
Q ss_pred CCCHHHHHHHHHhC-CCCchHHHHHHHHHcchhhhcc-------CchHHHHHHHHHhcCCCCchhhhhhhcCCCCCCCCC
Q 023831 103 LANAITLKKLIRKG-IPPVLRPKVWFSLSGAAKKKST-------VPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHP 174 (276)
Q Consensus 103 ~~~~~~lk~l~~~G-IP~~~R~~vW~~llg~~~~~~~-------~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~RT~p~~~ 174 (276)
..+.++||+++|+| ||+.+|+.||++|+|+.....+ .....|++++++. ...++|. +..|.+.
T Consensus 37 ~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~~~~~l~~kr~eY~~l~~~~-----~~~r~I~----~~tP~~~ 107 (294)
T 3qwl_A 37 RLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHESHAKVMMYRKEQYLDVLHAL-----KVVRFVS----DATPQAE 107 (294)
T ss_dssp BCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHH-----HHTTSCC----TTSCHHH
T ss_pred CCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHhh-----hhhhhhh----ccCchHH
Confidence 45899999999999 9999999999999998322111 1135688887762 2233333 3333222
Q ss_pred CCCCchhHHHHHHHHhhhhhcCCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHhhcCCccCcCCCchhHHHHHHHHH
Q 023831 175 WLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFK 254 (276)
Q Consensus 175 ~F~~~~~~~~L~rVL~ays~~~p~iGY~QGm~~Iaa~LLl~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~ 254 (276)
.|...-..+. .....+|. .+++. ++|||+.|||++|+++.+|++|||||++||++. +++|.++++|++.. ++
T Consensus 108 vfl~~~~~~~-~~l~~~~~-~~~~~-~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~l--~~~f~~~~~gl~~~---l~ 179 (294)
T 3qwl_A 108 VYLRMYQLES-GKLPRSPS-FPLEP-DDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQL--NTKYRDSLPQLPKA---FE 179 (294)
T ss_dssp HHHHHHHHHH-TCCCSSTT-SCCCH-HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH--HTTTTTTGGGHHHH---HH
T ss_pred HHHHHHHccc-cccccccc-CCccc-chhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HHhhCCChhHHHHH---HH
Confidence 2221110000 00112221 13443 569999999999988889999999999999985 69999999999765 48
Q ss_pred HHHHHhCHHHHHHHHHhh
Q 023831 255 DLLVKQCPRYALVYEEFL 272 (276)
Q Consensus 255 ~Ll~~~~P~L~~hl~~~~ 272 (276)
.||+.++|+|++||++..
T Consensus 180 ~LL~~~dP~L~~HL~~~~ 197 (294)
T 3qwl_A 180 QYLNLEDGRLLTHLRMCS 197 (294)
T ss_dssp HHHHHHCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCC
Confidence 999999999999999874
No 8
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=33.15 E-value=12 Score=21.19 Aligned_cols=17 Identities=35% Similarity=0.763 Sum_probs=11.4
Q ss_pred hcCCCCCcccchhHHHH
Q 023831 194 FRDSDVGYCQGLNYVAA 210 (276)
Q Consensus 194 ~~~p~iGY~QGm~~Iaa 210 (276)
..+.-.|||||--+...
T Consensus 12 cehtmcgycqgplymtc 28 (40)
T 1erd_A 12 CEHTMCGYCQGPLYMTC 28 (40)
T ss_dssp TCGGGGGGSCHHHHHHH
T ss_pred ccccccccccCCeeEEE
Confidence 34556899999655443
No 9
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=24.15 E-value=69 Score=21.96 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=19.5
Q ss_pred HHHHHHhCCCCchHHHHHHHHHcch
Q 023831 109 LKKLIRKGIPPVLRPKVWFSLSGAA 133 (276)
Q Consensus 109 lk~l~~~GIP~~~R~~vW~~llg~~ 133 (276)
+-.+..-.||.+.|-.+|+-+....
T Consensus 41 ledL~~mkIpe~~R~kIWk~l~e~~ 65 (80)
T 1dxs_A 41 IEDLGALKIPEQYRMTIWRGLQDLK 65 (80)
T ss_dssp HHHHHHTTCCTTTHHHHHHHHHHC-
T ss_pred HHHHHhCCCCHHHHHHHHhhHHHhc
Confidence 3445577899999999999988654
No 10
>2js3_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural G PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris}
Probab=21.06 E-value=26 Score=24.03 Aligned_cols=11 Identities=45% Similarity=0.522 Sum_probs=8.8
Q ss_pred CcccchhHHHH
Q 023831 200 GYCQGLNYVAA 210 (276)
Q Consensus 200 GY~QGm~~Iaa 210 (276)
=|.|||.++++
T Consensus 17 lyfqgM~~~a~ 27 (96)
T 2js3_A 17 LYFQGMTDTAA 27 (96)
T ss_dssp BTTBSTTTHHH
T ss_pred eeeccccccCH
Confidence 49999988764
Done!