Query 023832
Match_columns 276
No_of_seqs 170 out of 1588
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 06:58:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023832.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023832hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0356 Mitochondrial chaperon 100.0 2.6E-76 5.7E-81 566.2 21.0 275 1-275 124-399 (550)
2 PLN03167 Chaperonin-60 beta su 100.0 1.4E-63 3E-68 498.6 29.8 274 1-275 166-439 (600)
3 PRK14104 chaperonin GroEL; Pro 100.0 1.1E-62 2.4E-67 488.2 30.8 275 1-275 111-385 (546)
4 PRK12852 groEL chaperonin GroE 100.0 9.4E-62 2E-66 481.9 31.5 275 1-275 111-385 (545)
5 PTZ00114 Heat shock protein 60 100.0 4.4E-60 9.5E-65 470.7 31.4 275 1-275 122-397 (555)
6 CHL00093 groEL chaperonin GroE 100.0 9.5E-60 2.1E-64 466.1 29.7 274 1-275 110-384 (529)
7 TIGR02348 GroEL chaperonin Gro 100.0 2.4E-59 5.2E-64 462.8 31.0 275 1-275 109-383 (524)
8 PRK00013 groEL chaperonin GroE 100.0 5.4E-59 1.2E-63 461.5 31.9 275 1-275 110-384 (542)
9 PRK12850 groEL chaperonin GroE 100.0 1.7E-58 3.7E-63 458.3 31.0 275 1-275 111-385 (544)
10 PRK12851 groEL chaperonin GroE 100.0 3.2E-58 7E-63 456.0 31.2 275 1-275 111-385 (541)
11 PRK12849 groEL chaperonin GroE 100.0 4.6E-58 1E-62 454.9 31.7 275 1-275 110-384 (542)
12 cd03344 GroEL GroEL_like type 100.0 3.4E-57 7.3E-62 447.0 31.7 275 1-275 108-382 (520)
13 COG0459 GroL Chaperonin GroEL 100.0 9.7E-46 2.1E-50 364.6 9.2 252 1-275 107-369 (524)
14 cd03343 cpn60 cpn60 chaperonin 100.0 3.8E-32 8.2E-37 268.5 19.9 221 1-245 111-389 (517)
15 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1.2E-31 2.6E-36 263.3 16.8 197 1-227 108-325 (484)
16 cd03338 TCP1_delta TCP-1 (CTT 100.0 6.3E-31 1.4E-35 259.7 18.6 226 1-245 104-388 (515)
17 TIGR02339 thermosome_arch ther 100.0 7.2E-31 1.6E-35 259.6 18.6 202 1-226 112-361 (519)
18 TIGR02340 chap_CCT_alpha T-com 100.0 5.4E-30 1.2E-34 254.4 21.3 208 1-227 108-364 (536)
19 cd03335 TCP1_alpha TCP-1 (CTT 100.0 9.8E-30 2.1E-34 252.0 21.3 206 1-225 104-358 (527)
20 TIGR02347 chap_CCT_zeta T-comp 100.0 4E-29 8.6E-34 247.9 22.8 204 1-228 112-369 (531)
21 TIGR02346 chap_CCT_theta T-com 100.0 3.3E-29 7.2E-34 248.5 16.1 226 1-245 114-390 (531)
22 cd03339 TCP1_epsilon TCP-1 (CT 100.0 3.4E-29 7.4E-34 248.1 15.9 190 1-214 119-351 (526)
23 cd03340 TCP1_eta TCP-1 (CTT or 100.0 3E-28 6.5E-33 241.1 22.6 223 1-245 112-391 (522)
24 TIGR02345 chap_CCT_eta T-compl 100.0 2.1E-29 4.5E-34 249.4 13.9 192 1-214 113-346 (522)
25 cd00309 chaperonin_type_I_II c 100.0 4.9E-28 1.1E-32 236.2 21.4 202 1-245 104-338 (464)
26 TIGR02343 chap_CCT_epsi T-comp 100.0 1.5E-28 3.2E-33 243.9 17.9 190 1-214 123-355 (532)
27 TIGR02342 chap_CCT_delta T-com 100.0 2.9E-28 6.3E-33 241.1 19.5 225 1-245 105-389 (517)
28 TIGR02344 chap_CCT_gamma T-com 100.0 3.4E-27 7.5E-32 233.7 19.8 219 1-245 112-393 (525)
29 PTZ00212 T-complex protein 1 s 99.9 1.4E-26 3.1E-31 229.8 16.2 225 1-244 123-397 (533)
30 cd03337 TCP1_gamma TCP-1 (CTT 99.9 3.6E-26 7.7E-31 224.3 17.6 202 1-244 112-351 (480)
31 cd03341 TCP1_theta TCP-1 (CTT 99.9 4.8E-26 1E-30 223.0 18.2 185 1-225 104-309 (472)
32 PF00118 Cpn60_TCP1: TCP-1/cpn 99.9 2.4E-25 5.1E-30 216.9 19.8 220 1-245 85-357 (485)
33 cd03336 TCP1_beta TCP-1 (CTT o 99.9 2.3E-25 4.9E-30 220.5 19.4 189 1-214 111-340 (517)
34 TIGR02341 chap_CCT_beta T-comp 99.9 1.5E-25 3.2E-30 221.9 15.7 195 1-214 112-341 (519)
35 cd03333 chaperonin_like chaper 99.9 1.5E-23 3.2E-28 184.3 15.1 143 32-216 2-158 (209)
36 KOG0364 Chaperonin complex com 99.8 2E-20 4.4E-25 176.8 14.9 220 1-246 115-394 (527)
37 KOG0358 Chaperonin complex com 99.8 3.9E-20 8.4E-25 172.7 12.5 190 1-214 122-358 (534)
38 KOG0361 Chaperonin complex com 99.8 9.5E-20 2.1E-24 170.4 12.1 207 1-228 116-379 (543)
39 KOG0360 Chaperonin complex com 99.8 6.8E-18 1.5E-22 161.0 12.7 195 1-214 115-355 (545)
40 cd03334 Fab1_TCP TCP-1 like do 99.7 6E-17 1.3E-21 147.8 16.8 175 44-243 19-244 (261)
41 KOG0363 Chaperonin complex com 99.7 4E-17 8.6E-22 152.1 14.5 201 2-227 117-374 (527)
42 KOG0359 Chaperonin complex com 99.5 1.6E-13 3.4E-18 130.3 10.2 203 1-228 113-373 (520)
43 KOG0357 Chaperonin complex com 99.4 2.3E-12 5E-17 119.2 8.8 101 123-240 144-262 (400)
44 KOG0362 Chaperonin complex com 99.3 2.6E-10 5.6E-15 110.1 20.3 202 1-228 122-377 (537)
45 KOG0230 Phosphatidylinositol-4 98.3 6.8E-06 1.5E-10 88.4 11.9 160 47-230 336-545 (1598)
46 COG0459 GroL Chaperonin GroEL 97.8 0.00012 2.5E-09 73.3 10.9 107 123-246 259-387 (524)
47 TIGR02345 chap_CCT_eta T-compl 94.3 0.009 2E-07 59.8 -1.0 118 132-275 245-375 (522)
48 PRK13125 trpA tryptophan synth 80.3 4.6 0.0001 36.3 6.1 113 88-204 81-202 (244)
49 PRK14736 atpC F0F1 ATP synthas 70.5 18 0.00039 29.8 6.6 38 228-265 90-127 (133)
50 COG1433 Uncharacterized conser 69.0 13 0.00027 30.4 5.3 43 126-176 57-99 (121)
51 PF07131 DUF1382: Protein of u 66.5 11 0.00025 26.8 3.9 52 1-55 4-55 (61)
52 TIGR01166 cbiO cobalt transpor 56.7 18 0.00038 30.7 4.3 41 105-145 143-188 (190)
53 PF10805 DUF2730: Protein of u 56.2 19 0.00042 28.4 4.1 37 231-267 46-82 (106)
54 cd01461 vWA_interalpha_trypsin 54.5 40 0.00086 27.4 6.0 31 160-193 128-159 (171)
55 PTZ00212 T-complex protein 1 s 54.2 20 0.00042 36.2 4.8 47 44-91 177-228 (533)
56 PF13768 VWA_3: von Willebrand 53.0 41 0.0009 27.2 5.8 66 120-190 77-153 (155)
57 PF01113 DapB_N: Dihydrodipico 51.4 53 0.0012 26.2 6.1 42 111-154 70-111 (124)
58 cd03232 ABC_PDR_domain2 The pl 50.3 33 0.00071 29.2 5.0 41 106-146 125-170 (192)
59 PRK09922 UDP-D-galactose:(gluc 49.8 2.1E+02 0.0046 26.4 11.7 43 220-262 302-352 (359)
60 cd03213 ABCG_EPDR ABCG transpo 49.3 33 0.00072 29.3 4.9 42 106-147 128-174 (194)
61 TIGR00960 3a0501s02 Type II (G 47.1 28 0.00061 30.0 4.1 41 105-145 154-199 (216)
62 PF01985 CRS1_YhbY: CRS1 / Yhb 45.0 36 0.00078 25.5 3.9 66 126-193 8-75 (84)
63 TIGR02673 FtsE cell division A 44.8 30 0.00066 29.7 3.9 41 105-145 153-198 (214)
64 cd03216 ABC_Carb_Monos_I This 44.4 32 0.00069 28.6 3.9 41 105-145 98-143 (163)
65 PRK13538 cytochrome c biogenes 44.0 37 0.0008 29.1 4.3 41 105-145 145-190 (204)
66 cd03218 ABC_YhbG The ABC trans 43.7 31 0.00068 30.0 3.9 40 106-145 150-194 (232)
67 cd03226 ABC_cobalt_CbiO_domain 43.1 32 0.00069 29.4 3.8 40 106-145 143-187 (205)
68 PRK10908 cell division protein 42.5 35 0.00075 29.6 4.0 40 106-145 154-198 (222)
69 cd03219 ABC_Mj1267_LivG_branch 42.3 34 0.00073 29.9 3.9 40 106-145 160-204 (236)
70 COG1121 ZnuC ABC-type Mn/Zn tr 41.8 40 0.00087 30.9 4.4 78 50-145 118-200 (254)
71 COG2876 AroA 3-deoxy-D-arabino 41.6 1.2E+02 0.0026 28.2 7.3 79 109-189 154-244 (286)
72 COG1880 CdhB CO dehydrogenase/ 41.5 41 0.0009 28.8 4.0 39 128-166 30-69 (170)
73 cd03234 ABCG_White The White s 41.3 53 0.0011 28.6 5.0 43 106-148 160-207 (226)
74 cd03235 ABC_Metallic_Cations A 40.4 38 0.00083 29.1 3.9 40 106-145 149-193 (213)
75 TIGR03436 acidobact_VWFA VWFA- 40.4 59 0.0013 29.6 5.3 58 135-192 166-237 (296)
76 PRK09580 sufC cysteine desulfu 39.9 39 0.00085 29.7 4.0 41 105-145 161-206 (248)
77 cd03225 ABC_cobalt_CbiO_domain 39.9 39 0.00085 28.9 3.9 41 105-145 150-195 (211)
78 COG4148 ModC ABC-type molybdat 39.8 35 0.00077 32.3 3.7 43 104-146 143-191 (352)
79 TIGR01216 ATP_synt_epsi ATP sy 39.7 65 0.0014 26.1 4.9 37 226-262 86-122 (130)
80 TIGR01978 sufC FeS assembly AT 39.6 39 0.00085 29.6 3.9 40 106-145 161-205 (243)
81 cd03262 ABC_HisP_GlnQ_permease 39.6 41 0.00089 28.8 4.0 41 105-145 151-196 (213)
82 PRK13539 cytochrome c biogenes 39.5 46 0.001 28.6 4.3 41 105-145 143-188 (207)
83 cd03215 ABC_Carb_Monos_II This 39.1 46 0.001 28.0 4.1 40 106-145 121-165 (182)
84 TIGR02341 chap_CCT_beta T-comp 39.0 41 0.00089 33.8 4.3 46 44-90 166-216 (519)
85 cd03217 ABC_FeS_Assembly ABC-t 39.0 42 0.00092 28.7 3.9 40 106-145 121-165 (200)
86 TIGR03771 anch_rpt_ABC anchore 38.9 42 0.00091 29.3 4.0 41 105-145 129-174 (223)
87 PRK00571 atpC F0F1 ATP synthas 38.7 1.5E+02 0.0032 24.1 7.0 36 226-261 88-123 (135)
88 cd03297 ABC_ModC_molybdenum_tr 38.6 43 0.00094 28.8 4.0 41 105-145 147-193 (214)
89 cd03246 ABCC_Protease_Secretio 38.5 47 0.001 27.7 4.0 41 105-145 112-157 (173)
90 cd03224 ABC_TM1139_LivF_branch 38.5 43 0.00094 28.9 3.9 40 106-145 149-193 (222)
91 TIGR03740 galliderm_ABC gallid 38.4 41 0.0009 29.1 3.8 41 105-145 140-185 (223)
92 PRK13695 putative NTPase; Prov 38.4 1.6E+02 0.0035 24.3 7.4 40 104-143 93-135 (174)
93 cd03268 ABC_BcrA_bacitracin_re 38.1 42 0.00092 28.7 3.8 41 105-145 142-187 (208)
94 cd03265 ABC_DrrA DrrA is the A 37.8 45 0.00098 28.8 4.0 41 105-145 147-193 (220)
95 cd03255 ABC_MJ0796_Lo1CDE_FtsE 37.7 52 0.0011 28.3 4.3 42 105-146 156-203 (218)
96 PRK09493 glnQ glutamine ABC tr 37.3 45 0.00099 29.2 3.9 41 105-145 152-197 (240)
97 TIGR03608 L_ocin_972_ABC putat 37.3 48 0.001 28.2 4.0 41 105-145 150-195 (206)
98 PF03102 NeuB: NeuB family; I 37.3 84 0.0018 28.5 5.7 76 119-203 54-129 (241)
99 PF07820 TraC: TraC-like prote 37.1 52 0.0011 25.6 3.6 30 228-262 3-32 (92)
100 cd03231 ABC_CcmA_heme_exporter 36.6 59 0.0013 27.8 4.5 40 106-145 142-186 (201)
101 cd01463 vWA_VGCC_like VWA Volt 36.6 83 0.0018 26.6 5.4 53 136-191 126-184 (190)
102 CHL00131 ycf16 sulfate ABC tra 36.6 47 0.001 29.3 3.9 40 106-145 168-212 (252)
103 PRK11264 putative amino-acid A 36.3 46 0.001 29.4 3.8 40 106-145 161-205 (250)
104 PRK15056 manganese/iron transp 36.0 46 0.001 30.0 3.8 41 105-145 158-203 (272)
105 cd03257 ABC_NikE_OppD_transpor 36.0 53 0.0012 28.3 4.1 41 105-145 161-207 (228)
106 KOG3633 BAG family molecular c 35.8 71 0.0015 28.0 4.6 45 229-273 51-117 (219)
107 cd03266 ABC_NatA_sodium_export 35.7 49 0.0011 28.5 3.8 41 105-145 152-197 (218)
108 PRK13600 putative ribosomal pr 35.7 1.1E+02 0.0023 23.3 5.2 51 129-189 24-74 (84)
109 cd03269 ABC_putative_ATPase Th 35.6 46 0.001 28.5 3.6 40 106-145 145-189 (210)
110 cd03256 ABC_PhnC_transporter A 35.5 50 0.0011 28.8 3.9 41 105-145 160-206 (241)
111 TIGR03708 poly_P_AMP_trns poly 35.5 4.7E+02 0.01 26.4 11.1 123 123-260 286-426 (493)
112 PRK11614 livF leucine/isoleuci 35.5 47 0.001 29.1 3.7 40 106-145 154-198 (237)
113 PRK10619 histidine/lysine/argi 35.4 49 0.0011 29.5 3.9 41 105-145 168-213 (257)
114 PF13788 DUF4180: Domain of un 35.2 1.7E+02 0.0036 23.6 6.4 56 107-166 5-75 (113)
115 cd03229 ABC_Class3 This class 34.8 54 0.0012 27.5 3.9 40 106-145 117-162 (178)
116 cd01453 vWA_transcription_fact 34.8 1.1E+02 0.0023 26.1 5.7 38 148-193 128-165 (183)
117 TIGR02770 nickel_nikD nickel i 34.7 52 0.0011 28.8 3.9 41 105-145 141-187 (230)
118 PRK10895 lipopolysaccharide AB 34.7 52 0.0011 28.9 3.9 40 106-145 154-198 (241)
119 cd03214 ABC_Iron-Siderophores_ 34.3 59 0.0013 27.3 4.0 41 105-145 113-159 (180)
120 PRK13543 cytochrome c biogenes 34.3 59 0.0013 28.1 4.1 40 106-145 154-198 (214)
121 COG1129 MglA ABC-type sugar tr 34.1 55 0.0012 33.0 4.3 42 105-146 417-463 (500)
122 cd01456 vWA_ywmD_type VWA ywmD 34.1 1.2E+02 0.0026 26.0 6.0 53 135-190 136-196 (206)
123 cd03261 ABC_Org_Solvent_Resist 34.0 55 0.0012 28.6 3.9 41 105-145 152-198 (235)
124 TIGR02324 CP_lyasePhnL phospho 33.9 65 0.0014 27.9 4.3 39 105-143 165-208 (224)
125 COG1122 CbiO ABC-type cobalt t 33.7 58 0.0013 29.3 4.0 56 91-146 135-201 (235)
126 TIGR03873 F420-0_ABC_ATP propo 33.6 55 0.0012 29.1 3.9 40 106-145 154-198 (256)
127 PRK11629 lolD lipoprotein tran 33.5 60 0.0013 28.4 4.1 40 106-145 162-207 (233)
128 cd03292 ABC_FtsE_transporter F 33.5 60 0.0013 27.8 4.0 41 105-145 152-197 (214)
129 PRK13540 cytochrome c biogenes 33.4 67 0.0015 27.4 4.3 40 105-144 143-187 (200)
130 CHL00063 atpE ATP synthase CF1 33.2 2.1E+02 0.0046 23.3 7.0 35 227-261 87-121 (134)
131 PRK13638 cbiO cobalt transport 32.9 57 0.0012 29.4 3.9 41 105-145 152-197 (271)
132 PF06698 DUF1192: Protein of u 32.7 47 0.001 23.7 2.6 24 228-251 22-45 (59)
133 cd03296 ABC_CysA_sulfate_impor 32.7 61 0.0013 28.5 4.0 40 106-145 153-198 (239)
134 PF10410 DnaB_bind: DnaB-helic 32.6 1.4E+02 0.0031 19.9 5.1 38 227-264 16-53 (59)
135 PRK11124 artP arginine transpo 32.6 60 0.0013 28.5 3.9 41 105-145 157-202 (242)
136 TIGR02314 ABC_MetN D-methionin 32.5 60 0.0013 30.8 4.1 40 106-145 157-202 (343)
137 TIGR02315 ABC_phnC phosphonate 32.2 65 0.0014 28.2 4.1 40 106-145 162-207 (243)
138 PRK10575 iron-hydroxamate tran 32.0 63 0.0014 29.0 4.0 41 105-145 163-209 (265)
139 COG0595 mRNA degradation ribon 31.8 96 0.0021 31.7 5.6 30 118-147 236-265 (555)
140 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 31.7 60 0.0013 28.4 3.7 40 106-145 159-203 (224)
141 TIGR02323 CP_lyasePhnK phospho 31.6 65 0.0014 28.5 4.0 40 106-145 165-210 (253)
142 TIGR01184 ntrCD nitrate transp 31.4 65 0.0014 28.2 4.0 40 106-145 131-176 (230)
143 PF00072 Response_reg: Respons 31.4 1.3E+02 0.0028 22.1 5.1 51 106-157 42-94 (112)
144 cd03298 ABC_ThiQ_thiamine_tran 31.1 66 0.0014 27.5 3.9 41 105-145 144-190 (211)
145 PRK11231 fecE iron-dicitrate t 30.9 65 0.0014 28.6 3.9 41 105-145 154-199 (255)
146 PRK10418 nikD nickel transport 30.9 67 0.0015 28.6 4.0 40 106-145 157-202 (254)
147 PRK13541 cytochrome c biogenes 30.8 79 0.0017 26.8 4.3 41 105-145 139-184 (195)
148 cd03301 ABC_MalK_N The N-termi 30.7 70 0.0015 27.4 4.0 41 105-145 146-192 (213)
149 COG0444 DppD ABC-type dipeptid 30.7 71 0.0015 30.3 4.2 41 105-145 169-215 (316)
150 TIGR03864 PQQ_ABC_ATP ABC tran 30.7 73 0.0016 27.9 4.2 40 106-145 149-194 (236)
151 COG3535 Uncharacterized conser 30.7 1.3E+02 0.0028 28.9 5.8 37 30-69 6-49 (357)
152 PRK10247 putative ABC transpor 30.5 75 0.0016 27.7 4.2 41 105-145 153-199 (225)
153 PRK11650 ugpC glycerol-3-phosp 30.4 66 0.0014 30.6 4.1 41 105-145 150-196 (356)
154 TIGR01189 ccmA heme ABC export 30.3 85 0.0019 26.6 4.4 42 104-145 142-188 (198)
155 PRK11701 phnK phosphonate C-P 30.2 67 0.0015 28.6 3.9 40 106-145 168-213 (258)
156 cd01467 vWA_BatA_type VWA BatA 30.2 1.4E+02 0.0031 24.5 5.6 20 174-193 155-174 (180)
157 PRK11144 modC molybdate transp 30.1 66 0.0014 30.5 4.0 40 106-145 145-190 (352)
158 cd03259 ABC_Carb_Solutes_like 29.9 76 0.0016 27.2 4.1 40 106-145 147-192 (213)
159 TIGR02769 nickel_nikE nickel i 29.9 71 0.0015 28.6 4.0 41 105-145 166-212 (265)
160 cd03230 ABC_DR_subfamily_A Thi 29.9 73 0.0016 26.5 3.8 40 106-145 112-156 (173)
161 PF04312 DUF460: Protein of un 29.8 68 0.0015 26.8 3.4 47 123-198 65-111 (138)
162 TIGR02211 LolD_lipo_ex lipopro 29.8 78 0.0017 27.3 4.1 41 105-145 157-203 (221)
163 PRK11831 putative ABC transpor 29.7 71 0.0015 28.8 4.0 40 106-145 160-205 (269)
164 COG1116 TauB ABC-type nitrate/ 29.7 81 0.0018 28.9 4.3 42 105-146 146-193 (248)
165 cd03238 ABC_UvrA The excision 29.7 76 0.0016 27.1 3.9 40 106-145 104-150 (176)
166 KOG2440 Pyrophosphate-dependen 29.5 51 0.0011 34.3 3.3 78 108-193 205-283 (666)
167 PRK13546 teichoic acids export 29.5 66 0.0014 29.1 3.8 11 132-142 159-169 (264)
168 cd03236 ABC_RNaseL_inhibitor_d 29.4 70 0.0015 28.8 3.9 41 105-145 155-200 (255)
169 PRK00539 atpC F0F1 ATP synthas 29.1 3E+02 0.0065 22.5 7.2 50 211-260 67-122 (133)
170 PRK09473 oppD oligopeptide tra 29.0 77 0.0017 29.8 4.2 41 105-145 177-223 (330)
171 PRK14250 phosphate ABC transpo 29.0 74 0.0016 28.0 3.9 40 106-145 148-193 (241)
172 PRK10584 putative ABC transpor 28.5 85 0.0018 27.2 4.2 40 106-145 163-208 (228)
173 cd03293 ABC_NrtD_SsuB_transpor 28.5 83 0.0018 27.1 4.1 40 106-145 148-193 (220)
174 TIGR01277 thiQ thiamine ABC tr 28.5 83 0.0018 27.1 4.1 40 106-145 145-190 (213)
175 COG4525 TauB ABC-type taurine 28.5 1.5E+02 0.0033 26.9 5.6 58 106-173 149-212 (259)
176 TIGR03258 PhnT 2-aminoethylpho 28.3 71 0.0015 30.5 3.9 41 106-146 154-201 (362)
177 PRK13547 hmuV hemin importer A 28.2 78 0.0017 28.8 4.0 39 107-145 172-216 (272)
178 PRK11288 araG L-arabinose tran 28.2 74 0.0016 31.4 4.1 40 106-145 413-457 (501)
179 PRK10343 RNA-binding protein Y 28.2 1.7E+02 0.0036 22.9 5.3 66 126-193 10-77 (97)
180 cd07371 2A5CPDO_AB The alpha a 28.1 1.7E+02 0.0038 26.6 6.3 86 43-145 84-175 (268)
181 PRK15112 antimicrobial peptide 28.0 75 0.0016 28.6 3.8 39 106-144 166-210 (267)
182 PLN02775 Probable dihydrodipic 28.0 2.1E+02 0.0046 26.7 6.8 59 107-172 79-137 (286)
183 PRK13636 cbiO cobalt transport 28.0 76 0.0016 28.9 3.9 42 105-146 157-204 (283)
184 COG2089 SpsE Sialic acid synth 27.9 1.3E+02 0.0027 28.9 5.3 14 228-241 252-265 (347)
185 TIGR02142 modC_ABC molybdenum 27.8 74 0.0016 30.1 3.9 40 106-145 148-193 (354)
186 TIGR03410 urea_trans_UrtE urea 27.8 80 0.0017 27.4 3.9 40 106-145 148-193 (230)
187 PRK13634 cbiO cobalt transport 27.7 77 0.0017 29.0 3.9 40 106-145 162-207 (290)
188 PRK13446 atpC F0F1 ATP synthas 27.7 3.4E+02 0.0073 22.1 7.4 36 226-261 88-123 (136)
189 PRK15093 antimicrobial peptide 27.6 79 0.0017 29.6 4.0 41 105-145 174-220 (330)
190 TIGR01091 upp uracil phosphori 27.5 3.7E+02 0.0079 23.5 8.0 55 104-158 119-174 (207)
191 TIGR01288 nodI ATP-binding ABC 27.3 74 0.0016 29.3 3.7 41 105-145 151-196 (303)
192 PRK13649 cbiO cobalt transport 27.2 77 0.0017 28.6 3.8 40 106-145 162-206 (280)
193 COG1358 RPL8A Ribosomal protei 27.2 1.6E+02 0.0034 23.8 5.1 20 134-153 43-62 (116)
194 PRK11300 livG leucine/isoleuci 27.1 82 0.0018 27.8 3.9 40 106-145 170-215 (255)
195 cd03258 ABC_MetN_methionine_tr 27.0 89 0.0019 27.2 4.0 41 105-145 156-202 (233)
196 cd03290 ABCC_SUR1_N The SUR do 27.0 80 0.0017 27.2 3.7 41 105-145 156-203 (218)
197 PRK13809 orotate phosphoribosy 26.9 1.2E+02 0.0026 26.7 4.8 71 83-168 28-98 (206)
198 PRK13548 hmuV hemin importer A 26.9 88 0.0019 27.9 4.1 39 107-145 158-202 (258)
199 PRK10982 galactose/methyl gala 26.9 76 0.0017 31.2 3.9 40 106-145 408-452 (491)
200 COG0355 AtpC F0F1-type ATP syn 26.9 3E+02 0.0066 22.6 6.9 37 227-263 90-130 (135)
201 PRK11000 maltose/maltodextrin 26.9 76 0.0017 30.3 3.8 40 106-145 150-195 (369)
202 PRK13650 cbiO cobalt transport 26.8 80 0.0017 28.7 3.8 41 105-145 156-202 (279)
203 PRK13631 cbiO cobalt transport 26.7 79 0.0017 29.6 3.8 40 106-145 193-237 (320)
204 PF14532 Sigma54_activ_2: Sigm 26.7 97 0.0021 24.8 3.9 36 120-155 7-43 (138)
205 PRK13881 conjugal transfer pro 26.6 92 0.002 31.1 4.3 40 225-264 177-216 (472)
206 TIGR01187 potA spermidine/putr 26.5 82 0.0018 29.4 3.9 41 105-145 116-162 (325)
207 cd01466 vWA_C3HC4_type VWA C3H 26.5 2E+02 0.0043 23.4 5.8 50 137-191 102-152 (155)
208 TIGR01188 drrA daunorubicin re 26.3 78 0.0017 29.1 3.7 41 105-145 140-185 (302)
209 PRK13642 cbiO cobalt transport 26.2 83 0.0018 28.5 3.8 41 106-146 157-203 (277)
210 PRK11022 dppD dipeptide transp 26.1 93 0.002 29.1 4.2 40 106-145 170-215 (326)
211 PRK11432 fbpC ferric transport 26.0 84 0.0018 29.9 3.9 41 106-146 153-199 (351)
212 PRK11308 dppF dipeptide transp 26.0 89 0.0019 29.3 4.0 40 106-145 171-216 (327)
213 PRK14244 phosphate ABC transpo 26.0 83 0.0018 27.8 3.7 39 106-145 166-209 (251)
214 PRK06683 hypothetical protein; 25.8 2.4E+02 0.0051 21.1 5.6 27 127-153 20-46 (82)
215 PF13519 VWA_2: von Willebrand 25.8 1.3E+02 0.0028 23.8 4.6 69 123-193 86-158 (172)
216 PRK09544 znuC high-affinity zi 25.8 93 0.002 27.8 4.0 40 106-145 137-182 (251)
217 PRK13647 cbiO cobalt transport 25.7 88 0.0019 28.3 3.9 40 106-145 155-199 (274)
218 PRK10771 thiQ thiamine transpo 25.7 99 0.0021 27.0 4.1 41 105-145 145-191 (232)
219 PF03850 Tfb4: Transcription f 25.5 2.1E+02 0.0046 26.4 6.3 63 106-194 143-206 (276)
220 PRK09984 phosphonate/organopho 25.5 93 0.002 27.7 3.9 41 105-145 168-214 (262)
221 PRK15079 oligopeptide ABC tran 25.4 96 0.0021 29.2 4.1 41 105-145 177-223 (331)
222 PRK13549 xylose transporter AT 25.4 84 0.0018 31.1 3.9 40 106-145 422-466 (506)
223 PRK09452 potA putrescine/sperm 25.4 89 0.0019 30.1 4.0 41 105-145 160-206 (375)
224 cd03300 ABC_PotA_N PotA is an 25.4 97 0.0021 27.1 4.0 40 106-145 147-192 (232)
225 PRK10851 sulfate/thiosulfate t 25.4 88 0.0019 29.8 3.9 41 105-145 152-198 (353)
226 COG3962 Acetolactate synthase 25.3 76 0.0016 32.0 3.5 49 108-156 204-256 (617)
227 TIGR03005 ectoine_ehuA ectoine 25.3 94 0.002 27.5 3.9 40 106-145 163-208 (252)
228 PRK13643 cbiO cobalt transport 25.3 92 0.002 28.4 3.9 40 106-145 161-205 (288)
229 TIGR03411 urea_trans_UrtD urea 25.3 89 0.0019 27.3 3.7 40 105-145 159-203 (242)
230 cd03253 ABCC_ATM1_transporter 25.3 73 0.0016 27.7 3.1 39 106-145 154-197 (236)
231 TIGR02982 heterocyst_DevA ABC 25.3 1E+02 0.0023 26.6 4.1 41 105-145 157-203 (220)
232 cd03233 ABC_PDR_domain1 The pl 25.2 1.4E+02 0.003 25.6 4.9 6 62-67 64-69 (202)
233 PRK06893 DNA replication initi 25.1 74 0.0016 28.0 3.2 78 104-184 88-175 (229)
234 cd03295 ABC_OpuCA_Osmoprotecti 25.0 95 0.0021 27.3 3.9 41 105-145 151-197 (242)
235 PRK09700 D-allose transporter 25.0 91 0.002 30.9 4.1 40 106-145 426-470 (510)
236 PRK09536 btuD corrinoid ABC tr 25.0 86 0.0019 30.5 3.8 41 106-146 156-201 (402)
237 PRK13651 cobalt transporter AT 25.0 93 0.002 28.8 3.9 40 106-145 182-226 (305)
238 PRK13644 cbiO cobalt transport 25.0 89 0.0019 28.3 3.7 41 105-145 152-197 (274)
239 PRK03695 vitamin B12-transport 24.8 1E+02 0.0022 27.3 4.1 39 107-145 151-194 (248)
240 PRK14240 phosphate transporter 24.6 92 0.002 27.5 3.7 39 106-145 163-206 (250)
241 PRK14268 phosphate ABC transpo 24.6 96 0.0021 27.6 3.9 39 106-145 171-214 (258)
242 PRK13641 cbiO cobalt transport 24.6 93 0.002 28.4 3.8 40 106-145 162-206 (287)
243 TIGR01837 PHA_granule_1 poly(h 24.5 1.2E+02 0.0026 24.3 4.0 35 229-264 76-110 (118)
244 PRK14273 phosphate ABC transpo 24.5 93 0.002 27.5 3.7 39 106-145 167-210 (254)
245 COG3959 Transketolase, N-termi 24.4 1E+02 0.0022 28.1 3.8 28 118-145 214-242 (243)
246 cd02685 MIT_C MIT_C; domain fo 24.4 47 0.001 28.0 1.7 49 82-137 4-52 (148)
247 cd03294 ABC_Pro_Gly_Bertaine T 24.3 1E+02 0.0022 27.8 3.9 13 106-118 177-189 (269)
248 cd03252 ABCC_Hemolysin The ABC 24.3 75 0.0016 27.7 3.0 39 106-145 155-198 (237)
249 PRK01018 50S ribosomal protein 24.0 2.2E+02 0.0047 22.0 5.3 23 128-150 26-48 (99)
250 COG2450 Uncharacterized conser 24.0 2.4E+02 0.0053 23.1 5.6 71 106-193 37-110 (124)
251 PRK13645 cbiO cobalt transport 24.0 91 0.002 28.4 3.6 40 106-145 167-212 (289)
252 PRK13646 cbiO cobalt transport 23.8 1E+02 0.0023 28.0 4.0 40 106-145 162-207 (286)
253 PRK14247 phosphate ABC transpo 23.8 99 0.0022 27.2 3.8 39 106-145 163-206 (250)
254 cd03267 ABC_NatA_like Similar 23.7 1.1E+02 0.0024 26.9 4.0 40 106-145 170-215 (236)
255 PRK14258 phosphate ABC transpo 23.7 1E+02 0.0023 27.5 3.9 40 106-145 167-212 (261)
256 PF02350 Epimerase_2: UDP-N-ac 23.7 3.8E+02 0.0081 25.3 7.9 140 105-261 178-343 (346)
257 PRK11248 tauB taurine transpor 23.7 1.1E+02 0.0024 27.3 4.1 40 106-145 145-190 (255)
258 TIGR03265 PhnT2 putative 2-ami 23.6 96 0.0021 29.5 3.8 40 106-145 151-196 (353)
259 PF04316 FlgM: Anti-sigma-28 f 23.6 1.5E+02 0.0032 20.4 3.9 34 228-261 22-55 (57)
260 TIGR00968 3a0106s01 sulfate AB 23.6 1.1E+02 0.0023 27.0 3.9 40 106-145 147-192 (237)
261 COG4098 comFA Superfamily II D 23.6 7.1E+02 0.015 24.4 9.8 88 122-214 293-386 (441)
262 PRK11247 ssuB aliphatic sulfon 23.6 1.1E+02 0.0024 27.5 4.0 40 106-145 150-195 (257)
263 PF00158 Sigma54_activat: Sigm 23.5 2.4E+02 0.0052 23.7 5.9 75 120-194 8-101 (168)
264 TIGR00253 RNA_bind_YhbY putati 23.5 2.7E+02 0.0058 21.6 5.6 65 127-193 9-75 (95)
265 PRK14274 phosphate ABC transpo 23.5 95 0.0021 27.6 3.6 39 106-145 172-215 (259)
266 TIGR03586 PseI pseudaminic aci 23.4 2.3E+02 0.005 26.9 6.2 35 106-142 134-168 (327)
267 PRK10253 iron-enterobactin tra 23.1 1.1E+02 0.0023 27.4 3.9 41 105-145 159-205 (265)
268 PRK11288 araG L-arabinose tran 23.1 96 0.0021 30.7 3.8 40 106-145 157-201 (501)
269 TIGR02633 xylG D-xylose ABC tr 23.0 99 0.0021 30.5 3.9 40 106-145 158-202 (500)
270 PRK14238 phosphate transporter 22.9 99 0.0022 27.9 3.6 39 106-145 184-227 (271)
271 cd03222 ABC_RNaseL_inhibitor T 22.8 1.2E+02 0.0025 25.9 3.9 40 106-145 88-133 (177)
272 PRK13639 cbiO cobalt transport 22.8 1.1E+02 0.0024 27.6 3.9 41 105-145 153-198 (275)
273 PRK14242 phosphate transporter 22.8 1.1E+02 0.0023 27.1 3.7 39 106-145 166-209 (253)
274 PRK10419 nikE nickel transport 22.7 1E+02 0.0022 27.8 3.6 40 106-145 168-213 (268)
275 PRK13602 putative ribosomal pr 22.7 2.4E+02 0.0051 21.0 5.1 23 130-152 23-45 (82)
276 KOG1489 Predicted GTP-binding 22.5 1.6E+02 0.0034 28.4 4.9 83 79-167 254-351 (366)
277 PRK14245 phosphate ABC transpo 22.5 1.1E+02 0.0023 27.1 3.7 39 106-145 163-206 (250)
278 KOG3647 Predicted coiled-coil 22.4 1.3E+02 0.0028 28.1 4.1 36 229-264 114-161 (338)
279 TIGR03415 ABC_choXWV_ATP choli 22.4 1.1E+02 0.0024 29.7 3.9 41 105-145 180-226 (382)
280 PRK13633 cobalt transporter AT 22.3 1.2E+02 0.0025 27.6 4.0 40 106-145 161-206 (280)
281 PF01808 AICARFT_IMPCHas: AICA 22.2 81 0.0018 29.9 2.9 29 138-169 196-224 (315)
282 PRK13648 cbiO cobalt transport 22.2 1.2E+02 0.0026 27.2 4.0 40 106-145 159-204 (269)
283 PRK07714 hypothetical protein; 22.1 2.9E+02 0.0062 21.2 5.6 26 127-152 27-52 (100)
284 PRK15439 autoinducer 2 ABC tra 22.1 1.1E+02 0.0023 30.5 4.0 40 106-145 157-201 (510)
285 PRK13549 xylose transporter AT 22.1 1.1E+02 0.0023 30.3 4.0 40 106-145 160-204 (506)
286 PRK14088 dnaA chromosomal repl 22.1 1.9E+02 0.0041 28.5 5.6 77 107-186 194-279 (440)
287 PLN02541 uracil phosphoribosyl 22.0 5.6E+02 0.012 23.3 8.3 60 107-166 157-219 (244)
288 PF10593 Z1: Z1 domain; Inter 22.0 1.1E+02 0.0024 27.5 3.7 74 113-210 89-162 (239)
289 KOG1981 SOK1 kinase belonging 21.9 78 0.0017 31.9 2.8 32 230-261 226-257 (513)
290 cd03249 ABC_MTABC3_MDL1_MDL2 M 21.6 1E+02 0.0022 26.9 3.4 39 106-145 156-199 (238)
291 PRK14241 phosphate transporter 21.5 1.1E+02 0.0025 27.1 3.7 39 106-145 165-208 (258)
292 PF04122 CW_binding_2: Putativ 21.5 2.8E+02 0.006 20.5 5.3 45 119-166 35-79 (92)
293 TIGR00972 3a0107s01c2 phosphat 21.4 1.2E+02 0.0026 26.7 3.8 39 106-145 161-204 (247)
294 PRK15424 propionate catabolism 21.3 2.7E+02 0.0058 28.4 6.6 52 120-171 228-289 (538)
295 PRK10982 galactose/methyl gala 21.3 1.1E+02 0.0024 30.1 3.9 40 106-145 151-195 (491)
296 PRK14270 phosphate ABC transpo 21.3 1.2E+02 0.0027 26.7 3.9 39 106-145 164-207 (251)
297 cd03264 ABC_drug_resistance_li 21.2 1.1E+02 0.0023 26.2 3.3 40 105-145 146-190 (211)
298 TIGR00627 tfb4 transcription f 21.2 2.8E+02 0.0061 25.8 6.2 61 107-192 146-206 (279)
299 PRK13452 atpC F0F1 ATP synthas 21.2 4.7E+02 0.01 21.7 7.1 30 227-256 90-120 (145)
300 PRK06620 hypothetical protein; 21.2 92 0.002 27.4 2.9 72 107-184 85-161 (214)
301 TIGR02633 xylG D-xylose ABC tr 21.2 1.2E+02 0.0025 30.0 3.9 40 106-145 420-464 (500)
302 PRK00129 upp uracil phosphorib 21.1 5.5E+02 0.012 22.3 7.9 63 104-166 121-184 (209)
303 cd03260 ABC_PstB_phosphate_tra 21.1 1.2E+02 0.0026 26.2 3.7 40 105-145 157-201 (227)
304 PRK14261 phosphate ABC transpo 21.0 1.3E+02 0.0027 26.7 3.8 14 106-119 166-179 (253)
305 PRK15439 autoinducer 2 ABC tra 21.0 1.2E+02 0.0025 30.2 3.9 11 107-117 421-431 (510)
306 PRK14267 phosphate ABC transpo 20.9 1.3E+02 0.0028 26.6 3.9 39 106-145 166-209 (253)
307 PHA02675 ORF104 fusion protein 20.9 3E+02 0.0064 21.1 5.1 45 217-263 20-64 (90)
308 COG1124 DppF ABC-type dipeptid 20.9 1.3E+02 0.0027 27.7 3.8 40 106-145 158-203 (252)
309 PRK10762 D-ribose transporter 20.8 1.2E+02 0.0026 30.0 3.9 41 105-145 157-202 (501)
310 cd01451 vWA_Magnesium_chelatas 20.8 2.8E+02 0.0061 23.0 5.8 32 160-192 132-163 (178)
311 PRK10744 pstB phosphate transp 20.7 1.2E+02 0.0026 27.0 3.6 39 106-145 173-216 (260)
312 cd03254 ABCC_Glucan_exporter_l 20.7 1E+02 0.0022 26.6 3.2 40 105-145 155-199 (229)
313 cd03247 ABCC_cytochrome_bd The 20.7 1.1E+02 0.0023 25.6 3.2 39 106-145 115-158 (178)
314 PRK13536 nodulation factor exp 20.7 1.2E+02 0.0025 28.8 3.7 41 105-145 188-233 (340)
315 PLN03211 ABC transporter G-25; 20.6 1.6E+02 0.0035 30.5 5.0 45 106-150 223-272 (659)
316 COG0289 DapB Dihydrodipicolina 20.6 2.1E+02 0.0045 26.5 5.2 51 117-171 76-126 (266)
317 PRK13652 cbiO cobalt transport 20.6 1.3E+02 0.0028 27.2 3.9 40 106-145 154-199 (277)
318 PRK11153 metN DL-methionine tr 20.6 1.2E+02 0.0026 28.6 3.8 40 106-145 157-202 (343)
319 PRK14265 phosphate ABC transpo 20.6 1.2E+02 0.0025 27.5 3.6 39 106-145 178-221 (274)
320 COG1136 SalX ABC-type antimicr 20.5 1.5E+02 0.0032 26.8 4.1 40 105-144 158-203 (226)
321 smart00798 AICARFT_IMPCHas AIC 20.5 2.2E+02 0.0047 27.0 5.4 88 138-233 193-302 (311)
322 PRK09700 D-allose transporter 20.5 1.2E+02 0.0027 29.9 4.0 40 106-145 162-206 (510)
323 PRK13635 cbiO cobalt transport 20.4 1.3E+02 0.0028 27.4 3.8 41 105-145 156-202 (279)
324 COG1534 Predicted RNA-binding 20.3 3.4E+02 0.0074 21.3 5.6 65 127-193 10-76 (97)
325 PRK11239 hypothetical protein; 20.3 6.3E+02 0.014 22.7 8.2 28 228-264 184-211 (215)
326 cd03299 ABC_ModC_like Archeal 20.3 1.4E+02 0.003 26.2 3.9 40 106-145 146-191 (235)
327 PRK14256 phosphate ABC transpo 20.3 1.4E+02 0.0031 26.3 4.0 39 106-145 165-208 (252)
328 PRK14269 phosphate ABC transpo 20.2 1.2E+02 0.0026 26.7 3.5 39 106-145 159-202 (246)
329 PRK08327 acetolactate synthase 20.1 3.3E+02 0.0072 27.5 7.1 26 119-144 206-231 (569)
330 cd03237 ABC_RNaseL_inhibitor_d 20.0 1.4E+02 0.0031 26.6 4.0 41 105-145 131-177 (246)
331 PRK08350 hypothetical protein; 20.0 2E+02 0.0044 27.6 5.1 20 172-191 291-310 (341)
No 1
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-76 Score=566.24 Aligned_cols=275 Identities=59% Similarity=0.932 Sum_probs=272.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccCChHHHHHHhhhcCCCchhHHHHHHHHHHhcccCccEEEecCCcceeeEEEE
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV 80 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~~~~~i~~VA~iSa~~d~~ig~lia~Av~~vg~~G~I~ie~g~~~~~~l~v~ 80 (276)
+||++++||+++|++.+++.|+++|+||+++++|.|||++|+|+|.++|++|++||++||++|+|+|++|++++|+++++
T Consensus 124 ~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiSAngD~~ig~li~~a~~kvG~~GVItv~~gkt~~delev~ 203 (550)
T KOG0356|consen 124 ANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATISANGDKEIGNLISDAMKKVGRKGVITVKDGKTLEDELEVI 203 (550)
T ss_pred CCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCCcHHHHHHHHHHHHHhCcCCeEEeecCCccccchhhh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeEEEeeeccCcccccccccceeeecCceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhccccc
Q 023832 81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAG 160 (276)
Q Consensus 81 eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~ 160 (276)
|||+||+||+||||+|+++++++||+||++|++++||+++++|+|+||...+..+|||||||||++|||++|++|+++++
T Consensus 204 eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~g 283 (550)
T KOG0356|consen 204 EGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGG 283 (550)
T ss_pred hcccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHHHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCC-ccccccCcccCceeeEEEEeCCcEEEEcCCCCHHHHHHHHHHH
Q 023832 161 IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELG-MDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQI 239 (276)
Q Consensus 161 ~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g-~~l~~~~~~~LG~a~~v~v~~~~T~i~~g~g~~~~i~~r~~~l 239 (276)
+||||||+|+|||.|++.|+|||++|||++++++.+ ++|+++++++||.|.++++++++|+++.|.+++++++.||+|+
T Consensus 284 lqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqi 363 (550)
T KOG0356|consen 284 LQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQI 363 (550)
T ss_pred eeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhhcCCeEEEEeCccc
Q 023832 240 RSAIENSTSDYDKEKLQERLAKLSGGVAVLKVCCGF 275 (276)
Q Consensus 240 ~~~~~~~~s~~~~~~L~eRla~L~ggvavi~vGg~~ 275 (276)
+..++.++++|++++|+||++||+||+|+|+|||.+
T Consensus 364 k~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~s 399 (550)
T KOG0356|consen 364 KEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHS 399 (550)
T ss_pred HHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcc
Confidence 999999999999999999999999999999999976
No 2
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1.4e-63 Score=498.59 Aligned_cols=274 Identities=46% Similarity=0.776 Sum_probs=268.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccCChHHHHHHhhhcCCCchhHHHHHHHHHHhcccCccEEEecCCcceeeEEEE
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV 80 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~~~~~i~~VA~iSa~~d~~ig~lia~Av~~vg~~G~I~ie~g~~~~~~l~v~ 80 (276)
.||+.|++||++|++.+++.|+++|+|+++ ++|.+||++|+++|+.+|+|+++|+.+||++|+|++++|++++|+++++
T Consensus 166 i~P~~I~~G~~~A~~~~~~~L~~~s~~v~d-~~L~~vA~tS~~~~~~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v 244 (600)
T PLN03167 166 ANPVQITRGIEKTAKALVKELKKMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVV 244 (600)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcccCCH-HHHHHHHHHhccCcHHHHHHHHHHHHHhccCCcEEeccCCCccceeEEE
Confidence 499999999999999999999999999975 6899999999999999999999999999999999999999999888999
Q ss_pred EeEEEeeeccCcccccccccceeeecCceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhccccc
Q 023832 81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAG 160 (276)
Q Consensus 81 eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~ 160 (276)
+||.||+||+||||+||+++|+++++||+||++|++|++.++++|++|.+.+.|+||||++++|+++||++|+.||++|.
T Consensus 245 ~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~ 324 (600)
T PLN03167 245 EGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGS 324 (600)
T ss_pred EEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCccccccCcccCceeeEEEEeCCcEEEEcCCCCHHHHHHHHHHHH
Q 023832 161 IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240 (276)
Q Consensus 161 ~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l~~~~~~~LG~a~~v~v~~~~T~i~~g~g~~~~i~~r~~~l~ 240 (276)
+++||||+|+||++|+++|+|||++|||++++++.|++++++++++||+|++|++++++|++++|.|+++.+++|+.+|+
T Consensus 325 ~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~ 404 (600)
T PLN03167 325 LKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIK 404 (600)
T ss_pred ceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhhcCCeEEEEeCccc
Q 023832 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKVCCGF 275 (276)
Q Consensus 241 ~~~~~~~s~~~~~~L~eRla~L~ggvavi~vGg~~ 275 (276)
.+++.++++|++++|++||++|+|++++|+|||+|
T Consensus 405 ~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t 439 (600)
T PLN03167 405 NLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQT 439 (600)
T ss_pred hhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCc
Confidence 99999999999999999999999999999999987
No 3
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=1.1e-62 Score=488.24 Aligned_cols=275 Identities=58% Similarity=0.940 Sum_probs=269.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccCChHHHHHHhhhcCCCchhHHHHHHHHHHhcccCccEEEecCCcceeeEEEE
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV 80 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~~~~~i~~VA~iSa~~d~~ig~lia~Av~~vg~~G~I~ie~g~~~~~~l~v~ 80 (276)
.||+.|++||++|++.+++.|+++|+|+++.+++.+||++|+++|+.+|+++++|+.++|.+|.|+++.+++++++++++
T Consensus 111 i~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~lv~~Av~~vg~~g~i~v~~~~~~~~~~~~~ 190 (546)
T PRK14104 111 MNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKVGNEGVITVEEAKSLETELDVV 190 (546)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhccCCceeeEecccccceEEEE
Confidence 49999999999999999999999999998888899999999999999999999999999999999999998887889999
Q ss_pred EeEEEeeeccCcccccccccceeeecCceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhccccc
Q 023832 81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAG 160 (276)
Q Consensus 81 eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~ 160 (276)
+||.||+||+||||++++++|+++++||+||++|.+++++++++|+|+++.++|+||||++++|+++||++|+.||++|+
T Consensus 191 ~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~ 270 (546)
T PRK14104 191 EGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGG 270 (546)
T ss_pred EEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCccccccCcccCceeeEEEEeCCcEEEEcCCCCHHHHHHHHHHHH
Q 023832 161 IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240 (276)
Q Consensus 161 ~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l~~~~~~~LG~a~~v~v~~~~T~i~~g~g~~~~i~~r~~~l~ 240 (276)
++|||||+|+||++|+++|+|||++|||++++++.|++++++++++||+|++++++++.|++++|.++++++.+|+++|+
T Consensus 271 ~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~ 350 (546)
T PRK14104 271 LKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIK 350 (546)
T ss_pred eeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEcCCEEEEEeCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhhcCCeEEEEeCccc
Q 023832 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKVCCGF 275 (276)
Q Consensus 241 ~~~~~~~s~~~~~~L~eRla~L~ggvavi~vGg~~ 275 (276)
+++++++++|+|++|+|||+||+|++|+|.|||+|
T Consensus 351 ~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t 385 (546)
T PRK14104 351 AQIEETTSDYDREKLQERLAKLAGGVAVIRVGGAT 385 (546)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 99999999999999999999999999999999986
No 4
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=9.4e-62 Score=481.87 Aligned_cols=275 Identities=59% Similarity=0.952 Sum_probs=269.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccCChHHHHHHhhhcCCCchhHHHHHHHHHHhcccCccEEEecCCcceeeEEEE
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV 80 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~~~~~i~~VA~iSa~~d~~ig~lia~Av~~vg~~G~I~ie~g~~~~~~l~v~ 80 (276)
.||+.|++||++|++.+++.|+++|+|+++.+++.+||++|+++|+.+|+|+++|+.+||.+|+|+++.|+++.++++++
T Consensus 111 i~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~eA~~~vg~~g~i~v~~g~~~~~~~~~v 190 (545)
T PRK12852 111 MNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMIAQAMQKVGNEGVITVEENKSLETEVDIV 190 (545)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHHHHHHHHHHhccCCceeeecCCCcceEEEEE
Confidence 49999999999999999999999999999888899999999988999999999999999999999999999987789999
Q ss_pred EeEEEeeeccCcccccccccceeeecCceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhccccc
Q 023832 81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAG 160 (276)
Q Consensus 81 eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~ 160 (276)
+||.||+||+||||++++++|+++++||+||++|++|+++++++|+|+++.++|+||||++++|+++||++|+.||++|+
T Consensus 191 ~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~ 270 (545)
T PRK12852 191 EGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGG 270 (545)
T ss_pred EeEEecCCccCCccccccccceEEecCceEEEecCccCCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCccccccCcccCceeeEEEEeCCcEEEEcCCCCHHHHHHHHHHHH
Q 023832 161 IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240 (276)
Q Consensus 161 ~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l~~~~~~~LG~a~~v~v~~~~T~i~~g~g~~~~i~~r~~~l~ 240 (276)
++|+|||+|+||++|+++|+|||++|||++++++.|++++++++++||+|++|+++++.|++++|.+++++|..|+++|+
T Consensus 271 ~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~ 350 (545)
T PRK12852 271 LKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIK 350 (545)
T ss_pred ceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEccEEEEEeCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhhcCCeEEEEeCccc
Q 023832 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKVCCGF 275 (276)
Q Consensus 241 ~~~~~~~s~~~~~~L~eRla~L~ggvavi~vGg~~ 275 (276)
.+++++.++|++++|+|||+||+|++|+|.|||+|
T Consensus 351 ~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t 385 (545)
T PRK12852 351 AQIEETTSDYDREKLQERLAKLAGGVAVIRVGGAT 385 (545)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 99999999999999999999999999999999987
No 5
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=4.4e-60 Score=470.73 Aligned_cols=275 Identities=63% Similarity=0.981 Sum_probs=269.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccCChHHHHHHhhhcCCCchhHHHHHHHHHHhcccCccEEEecCCcceeeEEEE
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV 80 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~~~~~i~~VA~iSa~~d~~ig~lia~Av~~vg~~G~I~ie~g~~~~~~l~v~ 80 (276)
.||..|++||++|++.+++.|+++|+|+++.+++.++|++|+++++.+|+++++|+.++|.+|.|++++|++++++++++
T Consensus 122 ihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~eAv~~vg~~g~I~~~~g~~~~ds~~~v 201 (555)
T PTZ00114 122 LNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEIGSLIADAMDKVGKDGTITVEDGKTLEDELEVV 201 (555)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCcEEEcCCCCccceEEEE
Confidence 49999999999999999999999999999889999999999988999999999999999999999999999999878999
Q ss_pred EeEEEeeeccCcccccccccceeeecCceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhccccc
Q 023832 81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAG 160 (276)
Q Consensus 81 eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~ 160 (276)
+||.||+||+||||+|++++|+++++||+||++|++|+++++++|+|+++.++|+||||++++|+++||++|+.|+++|+
T Consensus 202 ~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~ 281 (555)
T PTZ00114 202 EGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGG 281 (555)
T ss_pred EEEEEeccccccccccccccCeEEecCCEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEeCCCCccCccchHHhHHhHhCCeEEecC-CCccccccCcccCceeeEEEEeCCcEEEEcCCCCHHHHHHHHHHH
Q 023832 161 IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEE-LGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQI 239 (276)
Q Consensus 161 ~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~-~g~~l~~~~~~~LG~a~~v~v~~~~T~i~~g~g~~~~i~~r~~~l 239 (276)
++|+|||.|+||++|+++|+|||.+|||+++++. .|+.++++++++||+|++|+++++.|++++|.+++++|+.|+++|
T Consensus 282 ~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l 361 (555)
T PTZ00114 282 LKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTKDETVILTGGGDKAEIKERVELL 361 (555)
T ss_pred eEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEeceEEEEeCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhhcCCeEEEEeCccc
Q 023832 240 RSAIENSTSDYDKEKLQERLAKLSGGVAVLKVCCGF 275 (276)
Q Consensus 240 ~~~~~~~~s~~~~~~L~eRla~L~ggvavi~vGg~~ 275 (276)
+.+++.++++|+|++|+|||+||+|++++|.|||+|
T Consensus 362 ~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t 397 (555)
T PTZ00114 362 RSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGAS 397 (555)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCC
Confidence 999999999999999999999999999999999987
No 6
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=9.5e-60 Score=466.06 Aligned_cols=274 Identities=49% Similarity=0.837 Sum_probs=267.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccCChHHHHHHhhhcCCCchhHHHHHHHHHHhcccCccEEEecCCcceeeEEEE
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV 80 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~~~~~i~~VA~iSa~~d~~ig~lia~Av~~vg~~G~I~ie~g~~~~~~l~v~ 80 (276)
.||+.|++||++|++.+++.|+++|+|+++.++|.+||++|+++++.+|+|+++|+.+||.+|.|++++|++.+++++++
T Consensus 110 i~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~~~~~l~~lv~eAv~~vg~~g~i~~~~g~~~~~~~~~v 189 (529)
T CHL00093 110 ANPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVGSMIADAIEKVGREGVISLEEGKSTVTELEIT 189 (529)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhccCCceeecCCCccceeeEEE
Confidence 49999999999999999999999999999999999999999999999999999999999999999999988888899999
Q ss_pred EeEEEeeeccCcccccccccceeeecCceEEEecccCCcH-HHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccc
Q 023832 81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNL-TAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRA 159 (276)
Q Consensus 81 eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~-~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g 159 (276)
+|+.||+||+||||++++++|+++++||+||++|++|+.. ++++|+|+++.++|+||||++++|++++|++|+.|+++|
T Consensus 190 ~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g 269 (529)
T CHL00093 190 EGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRG 269 (529)
T ss_pred eeEEecCccCcCccccCCccceEEecCceehhhcCCCCchHHHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred cceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCccccccCcccCceeeEEEEeCCcEEEEcCCCCHHHHHHHHHHH
Q 023832 160 GIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQI 239 (276)
Q Consensus 160 ~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l~~~~~~~LG~a~~v~v~~~~T~i~~g~g~~~~i~~r~~~l 239 (276)
.++|||||.|+||++|+++|+|||.+|||++++++.|.+++++++++||+|++|+++++.|++++ .|++++|..||+++
T Consensus 270 ~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~~~-~~~~~~i~~~~~~~ 348 (529)
T CHL00093 270 IVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTKDSTTIIA-DGNEEQVKARCEQL 348 (529)
T ss_pred cceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEecCEEEEEe-cCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 78999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhhcCCeEEEEeCccc
Q 023832 240 RSAIENSTSDYDKEKLQERLAKLSGGVAVLKVCCGF 275 (276)
Q Consensus 240 ~~~~~~~~s~~~~~~L~eRla~L~ggvavi~vGg~~ 275 (276)
+++++.++++|+|++|+|||+||+|++++|.+||+|
T Consensus 349 ~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t 384 (529)
T CHL00093 349 RKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAAT 384 (529)
T ss_pred HHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCc
Confidence 999999999999999999999999999999999987
No 7
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=2.4e-59 Score=462.75 Aligned_cols=275 Identities=59% Similarity=0.925 Sum_probs=269.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccCChHHHHHHhhhcCCCchhHHHHHHHHHHhcccCccEEEecCCcceeeEEEE
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV 80 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~~~~~i~~VA~iSa~~d~~ig~lia~Av~~vg~~G~I~ie~g~~~~~~l~v~ 80 (276)
.||..|++||++|.+.++++|+++|+|+++.+++.++|++|+++++.+++++++|+.++|.+|.|.|+.|++.+++++++
T Consensus 109 ihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~~~s~~v 188 (524)
T TIGR02348 109 ANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGSLIAEAMEKVGKDGVITVEESKSLETELEVV 188 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhCcCCcEeeecCCCccccEEEE
Confidence 49999999999999999999999999999889999999999998999999999999999999999999999998899999
Q ss_pred EeEEEeeeccCcccccccccceeeecCceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhccccc
Q 023832 81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAG 160 (276)
Q Consensus 81 eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~ 160 (276)
+|+.||+||.||||++++++|+.+++||+||++|++|+++++++|+|+++.++|+||||++++|+++||++|+.|+++|+
T Consensus 189 ~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~ 268 (524)
T TIGR02348 189 EGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGT 268 (524)
T ss_pred EeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCccccccCcccCceeeEEEEeCCcEEEEcCCCCHHHHHHHHHHHH
Q 023832 161 IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240 (276)
Q Consensus 161 ~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l~~~~~~~LG~a~~v~v~~~~T~i~~g~g~~~~i~~r~~~l~ 240 (276)
++++|||.|+||++|+++|+|||++|||++++++.|++++++++++||+|++|+++++.|++++|.++++++..|+++|+
T Consensus 269 ~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~~~~ri~~l~ 348 (524)
T TIGR02348 269 LNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKARVAQIK 348 (524)
T ss_pred cceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEeecEEEEEcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhhcCCeEEEEeCccc
Q 023832 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKVCCGF 275 (276)
Q Consensus 241 ~~~~~~~s~~~~~~L~eRla~L~ggvavi~vGg~~ 275 (276)
+++++++++|||++|+|||+||+|++++|.+||+|
T Consensus 349 ~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t 383 (524)
T TIGR02348 349 AQIEETTSDYDREKLQERLAKLAGGVAVIKVGAAT 383 (524)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 99999999999999999999999999999999987
No 8
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5.4e-59 Score=461.55 Aligned_cols=275 Identities=59% Similarity=0.922 Sum_probs=268.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccCChHHHHHHhhhcCCCchhHHHHHHHHHHhcccCccEEEecCCcceeeEEEE
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV 80 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~~~~~i~~VA~iSa~~d~~ig~lia~Av~~vg~~G~I~ie~g~~~~~~l~v~ 80 (276)
.||..|++||++|.+.++++|+++|+|+++.+++.++|++|+++++.+++++++|+..+|.+|.|+|+.+.+..++++++
T Consensus 110 i~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls~lv~~Av~~v~~~g~i~i~~~~~~~~~~~~v 189 (542)
T PRK00013 110 ANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIGKLIAEAMEKVGKEGVITVEESKGFETELEVV 189 (542)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHhCcCCcEEEEEcCCCCceEEEE
Confidence 49999999999999999999999999999899999999999988999999999999999999999999887777799999
Q ss_pred EeEEEeeeccCcccccccccceeeecCceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhccccc
Q 023832 81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAG 160 (276)
Q Consensus 81 eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~ 160 (276)
+|+.||+||.||||++++++|+.+++||+||++|++|+++++++|+|+++.++|+||||++++|+++||++|..|+++|.
T Consensus 190 ~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~ 269 (542)
T PRK00013 190 EGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGT 269 (542)
T ss_pred EeEEecCCcccccccccccCCeEEEecCEEEEEcCccCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCccccccCcccCceeeEEEEeCCcEEEEcCCCCHHHHHHHHHHHH
Q 023832 161 IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240 (276)
Q Consensus 161 ~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l~~~~~~~LG~a~~v~v~~~~T~i~~g~g~~~~i~~r~~~l~ 240 (276)
++++|||.|+||++|+++|+|||.+|||++++++.|.+++++++++||+|++|+++++.++++.|.++++.+..|+++|+
T Consensus 270 ~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~ 349 (542)
T PRK00013 270 LKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVAQIK 349 (542)
T ss_pred ceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEecCEEEEEeCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhhcCCeEEEEeCccc
Q 023832 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKVCCGF 275 (276)
Q Consensus 241 ~~~~~~~s~~~~~~L~eRla~L~ggvavi~vGg~~ 275 (276)
+++++++++|||++|+|||+||+|+++.|.|||+|
T Consensus 350 ~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t 384 (542)
T PRK00013 350 AQIEETTSDYDREKLQERLAKLAGGVAVIKVGAAT 384 (542)
T ss_pred HHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 99999999999999999999999999999999987
No 9
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.7e-58 Score=458.32 Aligned_cols=275 Identities=63% Similarity=0.984 Sum_probs=268.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccCChHHHHHHhhhcCCCchhHHHHHHHHHHhcccCccEEEecCCcceeeEEEE
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV 80 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~~~~~i~~VA~iSa~~d~~ig~lia~Av~~vg~~G~I~ie~g~~~~~~l~v~ 80 (276)
.||..|++||++|.+.++++|+++|+|+++.++|.++|++|+++|+.+++++++|+.++|.+|.|.++.++..+++++++
T Consensus 111 ihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~lv~eAv~~vg~~g~i~v~~~~~~g~~~~~v 190 (544)
T PRK12850 111 MNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIGEMIAEAMDKVGKEGVITVEEAKTLGTELDVV 190 (544)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCceeeEEccccCcceEEE
Confidence 49999999999999999999999999999889999999999988999999999999999999999999887777899999
Q ss_pred EeEEEeeeccCcccccccccceeeecCceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhccccc
Q 023832 81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAG 160 (276)
Q Consensus 81 eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~ 160 (276)
+||.||+||.||||++++++|+.+++||+||++|++|++.++++|+|+++.++|+||||++++|+++||++|+.|+++|+
T Consensus 191 ~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~ 270 (544)
T PRK12850 191 EGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGG 270 (544)
T ss_pred EeEEecCccCcCccccccccCeEEEeCCEEEEEecccCCHHHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCccccccCcccCceeeEEEEeCCcEEEEcCCCCHHHHHHHHHHHH
Q 023832 161 IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240 (276)
Q Consensus 161 ~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l~~~~~~~LG~a~~v~v~~~~T~i~~g~g~~~~i~~r~~~l~ 240 (276)
++++|||.|+||++|+++|+|||.+|||++++++.|++++++++++||+|++|+++++.|+++.|.++++++..|+++|+
T Consensus 271 ~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~ 350 (544)
T PRK12850 271 LKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITKENTTIIDGAGDKKNIEARVKQIR 350 (544)
T ss_pred ceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEeeeEEEEeCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhhcCCeEEEEeCccc
Q 023832 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKVCCGF 275 (276)
Q Consensus 241 ~~~~~~~s~~~~~~L~eRla~L~ggvavi~vGg~~ 275 (276)
++++++.++|+|++|+|||+||+|++++|.|||+|
T Consensus 351 ~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t 385 (544)
T PRK12850 351 AQIEETTSDYDREKLQERLAKLAGGVAVIRVGGAT 385 (544)
T ss_pred HHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCc
Confidence 99999999999999999999999999999999987
No 10
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.2e-58 Score=456.04 Aligned_cols=275 Identities=61% Similarity=0.951 Sum_probs=268.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccCChHHHHHHhhhcCCCchhHHHHHHHHHHhcccCccEEEecCCcceeeEEEE
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV 80 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~~~~~i~~VA~iSa~~d~~ig~lia~Av~~vg~~G~I~ie~g~~~~~~l~v~ 80 (276)
.||..|++||++|.+.+++.|+++|+|+++.+++.+||++|+++|+.+++++++|+.++|.+|.|+|+.+.+..++++++
T Consensus 111 ihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~~lv~~Av~~vg~~g~i~i~~~~~~~~~~~~~ 190 (541)
T PRK12851 111 ANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIGRLVAEAMEKVGNEGVITVEESKTAETELEVV 190 (541)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhcccCceEEEEccCCCcceEEE
Confidence 49999999999999999999999999999889999999999988999999999999999999999998877777789999
Q ss_pred EeEEEeeeccCcccccccccceeeecCceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhccccc
Q 023832 81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAG 160 (276)
Q Consensus 81 eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~ 160 (276)
+|+.||+||.||||++++++|+.+++||+||++|+++++.++++|+|+++.++|+||||++++|+++||++|+.|+++|+
T Consensus 191 ~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~ 270 (541)
T PRK12851 191 EGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGG 270 (541)
T ss_pred EEEEecCCccccccccCCCCCeEEecccEEEEEcCCcCcHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCccccccCcccCceeeEEEEeCCcEEEEcCCCCHHHHHHHHHHHH
Q 023832 161 IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240 (276)
Q Consensus 161 ~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l~~~~~~~LG~a~~v~v~~~~T~i~~g~g~~~~i~~r~~~l~ 240 (276)
++|+|||.|+||++|+++|+|||.+|||++++++.+++++++++++||+|++|+++++.|++++|.++++++.+|+++|+
T Consensus 271 ~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~ 350 (541)
T PRK12851 271 LKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVAQIR 350 (541)
T ss_pred eeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEcceEEEEcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998989999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhhcCCeEEEEeCccc
Q 023832 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKVCCGF 275 (276)
Q Consensus 241 ~~~~~~~s~~~~~~L~eRla~L~ggvavi~vGg~~ 275 (276)
++++.++++|+|++|+|||+||+|++++|.+||+|
T Consensus 351 ~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t 385 (541)
T PRK12851 351 AQIEETTSDYDREKLQERLAKLAGGVAVIRVGAST 385 (541)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 99999999999999999999999999999999987
No 11
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4.6e-58 Score=454.90 Aligned_cols=275 Identities=63% Similarity=0.957 Sum_probs=269.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccCChHHHHHHhhhcCCCchhHHHHHHHHHHhcccCccEEEecCCcceeeEEEE
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV 80 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~~~~~i~~VA~iSa~~d~~ig~lia~Av~~vg~~G~I~ie~g~~~~~~l~v~ 80 (276)
.||..|++||++|.+.+++.|+++|+|+++.+++.++|++|+++++.+++++++|+.++|.+|.+.|+.|++++|+++++
T Consensus 110 ihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~Av~~v~~~g~i~i~~g~~~~d~~~~v 189 (542)
T PRK12849 110 ANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEESKTLETELEVT 189 (542)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEeEEeCCCcceeEEEE
Confidence 49999999999999999999999999999899999999999999999999999999999999999999999999889999
Q ss_pred EeEEEeeeccCcccccccccceeeecCceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhccccc
Q 023832 81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAG 160 (276)
Q Consensus 81 eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~ 160 (276)
+|+.||+||.||||++++++|+.+++||+||++|++|+++++++|+|+++.++|+||||++++|+++||++|..|+++|.
T Consensus 190 ~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~ 269 (542)
T PRK12849 190 EGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGG 269 (542)
T ss_pred EeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCccccccCcccCceeeEEEEeCCcEEEEcCCCCHHHHHHHHHHHH
Q 023832 161 IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240 (276)
Q Consensus 161 ~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l~~~~~~~LG~a~~v~v~~~~T~i~~g~g~~~~i~~r~~~l~ 240 (276)
++++|||.|+|+++|+++|+|||.+|||++++++.|.+++++++++||+|++|+++++.|+++.|.+++++|..|+++|+
T Consensus 270 ~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~ 349 (542)
T PRK12849 270 LKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARVAQIR 349 (542)
T ss_pred ccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEeeeeEEEEeCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhhcCCeEEEEeCccc
Q 023832 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKVCCGF 275 (276)
Q Consensus 241 ~~~~~~~s~~~~~~L~eRla~L~ggvavi~vGg~~ 275 (276)
+++++++++|++++|+||++||+|+++.|.+||+|
T Consensus 350 ~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t 384 (542)
T PRK12849 350 RQIEETTSDYDREKLQERLAKLAGGVAVIKVGAAT 384 (542)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 99999999999999999999999999999999987
No 12
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=3.4e-57 Score=447.01 Aligned_cols=275 Identities=64% Similarity=0.973 Sum_probs=269.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccCChHHHHHHhhhcCCCchhHHHHHHHHHHhcccCccEEEecCCcceeeEEEE
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV 80 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~~~~~i~~VA~iSa~~d~~ig~lia~Av~~vg~~G~I~ie~g~~~~~~l~v~ 80 (276)
.||..|++||+.|.+.++++|+++++|+++.+++.++|++|+++|+.+++++++|+.++|.+|.|.++.|++++|+++++
T Consensus 108 i~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~d~~~~~ 187 (520)
T cd03344 108 ANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKTLETELEVV 187 (520)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEEEEeCCCcceeEEEE
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred EeEEEeeeccCcccccccccceeeecCceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhccccc
Q 023832 81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAG 160 (276)
Q Consensus 81 eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~ 160 (276)
+|+.|++||.||||++++++|+.+++||+||++|++++++++++|+|+++.++|+||||++++|+++||++|+.|+++|.
T Consensus 188 ~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~ 267 (520)
T cd03344 188 EGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGG 267 (520)
T ss_pred eeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCccccccCcccCceeeEEEEeCCcEEEEcCCCCHHHHHHHHHHHH
Q 023832 161 IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240 (276)
Q Consensus 161 ~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l~~~~~~~LG~a~~v~v~~~~T~i~~g~g~~~~i~~r~~~l~ 240 (276)
++++|||.|++|++++++|+|||.+|||++++++.|.+++++++++||+|++|+++++.++++.|.+++++|+.|+++|+
T Consensus 268 ~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~ 347 (520)
T cd03344 268 LKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIR 347 (520)
T ss_pred ceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEeeceEEEEeCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998999999999999999999999999999999899999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhhcCCeEEEEeCccc
Q 023832 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKVCCGF 275 (276)
Q Consensus 241 ~~~~~~~s~~~~~~L~eRla~L~ggvavi~vGg~~ 275 (276)
.++++++++|++++|+||++||+|+++.|.|||+|
T Consensus 348 ~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t 382 (520)
T cd03344 348 KQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGAT 382 (520)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCc
Confidence 99999999999999999999999999999999986
No 13
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-46 Score=364.61 Aligned_cols=252 Identities=46% Similarity=0.706 Sum_probs=236.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccCChH-----HHHHHhhhcCCCchhHHHHHHHHHHhccc-----CccEEEecC
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSE-----EIAQVGTISANGEREIGELIAKAMEKVGK-----EGVITIHDG 70 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~~~~-----~i~~VA~iSa~~d~~ig~lia~Av~~vg~-----~G~I~ie~g 70 (276)
+||+.|++||++|++.++++|+++|+|+++.+ .+.++++.|+++++.+|+|+++||.+||. +|+++++++
T Consensus 107 i~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~~~~~t~v~sk~~~~~~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~ 186 (524)
T COG0459 107 IHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEELKIAITSVASKSANSDEEIGELVVEAVEKVGKEQSDLDGIIIVKES 186 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhhheeeeeeccChHHHHHHHHHHHHHhcccccccCCeEEEEec
Confidence 59999999999999999999999999999777 78888888888789999999999999999 899999988
Q ss_pred CcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEecCccchHHH
Q 023832 71 KTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALA 150 (276)
Q Consensus 71 ~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae~i~~~aL~ 150 (276)
++..+++++++||+||+||+||||+++ ++++|||||++|++|+..++.+| ++...+.++||++|++++++++|.
T Consensus 187 gg~~~e~~vveG~~~dkg~~s~~~~~~-----~~~e~~~Ili~d~~l~~~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~ 260 (524)
T COG0459 187 GGSETELEVVEGMVFDKGYLSPYFMPD-----KRLENPKILLLDKKLEIKKPELP-LEIVISSGKPLLIIAEDEEGEALA 260 (524)
T ss_pred CCCccceEEEeeEEecCCccCCCCCCc-----cccccceEEEEccccccccccCc-ceeEecCccHHHHHHHHHHHHHHH
Confidence 887889999999999999999999765 78899999999999999999999 999999999999999999999999
Q ss_pred HHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCccccccCcccCceeeEEEEeCCcEEEEcCCCCHH
Q 023832 151 TLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKK 230 (276)
Q Consensus 151 ~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l~~~~~~~LG~a~~v~v~~~~T~i~~g~g~~~ 230 (276)
+++.|.+++++++|+|++|||+|+|+++|+|++++||+++.++++| + ....+|.|+.+.+.++.|...-|.|
T Consensus 261 ~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~---~--~l~~~~ga~~v~~~~d~t~~~~G~~--- 332 (524)
T COG0459 261 TLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLG---E--RLAKLGGAKIVSVLKDLTTIVLGEG--- 332 (524)
T ss_pred HHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhH---H--HHHHccCceEEeecccCceeecCcc---
Confidence 9999999999999999999999999999999999999999999876 2 7889999999999999999999977
Q ss_pred HHHHHHHHHHHHHHhc-CChhHHHHHHHHHHhhcCCeEEEEeCccc
Q 023832 231 SIEERCEQIRSAIENS-TSDYDKEKLQERLAKLSGGVAVLKVCCGF 275 (276)
Q Consensus 231 ~i~~r~~~l~~~~~~~-~s~~~~~~L~eRla~L~ggvavi~vGg~~ 275 (276)
. +.++++. .++|+++++++|.++ +||+++|++||+|
T Consensus 333 -------~-~~~ve~~~~~~~~~~~~~~~~~~-~~~~~tI~vrgat 369 (524)
T COG0459 333 -------A-AGLVEETKTGDYDMEKLQERKAK-AGGVATILVRGAT 369 (524)
T ss_pred -------c-cceEEEeeccchhhhhhhhhhhc-CCCeEEEEECCcc
Confidence 1 6667776 789999999999999 9999999999987
No 14
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=3.8e-32 Score=268.49 Aligned_cols=221 Identities=18% Similarity=0.325 Sum_probs=187.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccC--ChHHHHHHhhhcCCCc------hhHHHHHHHHHHhcccCcc--------
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMIS--TSEEIAQVGTISANGE------REIGELIAKAMEKVGKEGV-------- 64 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~--~~~~i~~VA~iSa~~d------~~ig~lia~Av~~vg~~G~-------- 64 (276)
.||+.|++||++|.+.+++.|+++|+|++ +.+.+.+||++|.+++ +.+++++++|+.+++.++.
T Consensus 111 i~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~ 190 (517)
T cd03343 111 IHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLD 190 (517)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccHH
Confidence 49999999999999999999999999997 7789999999998754 8899999999999998754
Q ss_pred -EEE--ecCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEeccc-------------CCcHHHHHHHHH
Q 023832 65 -ITI--HDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTAVVRVLE 128 (276)
Q Consensus 65 -I~i--e~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~-------------i~~~~~i~p~le 128 (276)
|+| .+|++++ ++++++|+.|+++|.|||| +..++||+|+++|++ +++.+++.++++
T Consensus 191 ~I~i~k~~Ggs~~-ds~lv~G~v~~~~~~~~~m-------~~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~ 262 (517)
T cd03343 191 NIKIEKKTGGSVD-DTELIRGIVIDKEVVHPGM-------PKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLE 262 (517)
T ss_pred HeeEEeecCcCHH-HcceeeeEEEeccCCCCCC-------ccccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHH
Confidence 888 5899988 6999999999999999985 577899999999998 588888888755
Q ss_pred -----------HHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCc
Q 023832 129 -----------LALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGM 197 (276)
Q Consensus 129 -----------~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~ 197 (276)
.+.+.|.||||++++|+++|+++|..+++- || ++.++++|+|||.+|||+++++
T Consensus 263 ~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~------~v-----~~v~~~~l~~Ia~~tGa~ii~~---- 327 (517)
T cd03343 263 QEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGIL------AV-----RRVKKSDMEKLARATGAKIVTN---- 327 (517)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcE------EE-----EeCCHHHHHHHHHHhCCEEecc----
Confidence 899999999999999999999999877553 77 4888999999999999999998
Q ss_pred cccccCcccCceeeEEEEe---CCcEEEEcCCC------------CHHHHHHHHHHHHHHHHh
Q 023832 198 DLEKVNLDMLGTCKKVTIS---KDDTVILDGAG------------DKKSIEERCEQIRSAIEN 245 (276)
Q Consensus 198 ~l~~~~~~~LG~a~~v~v~---~~~T~i~~g~g------------~~~~i~~r~~~l~~~~~~ 245 (276)
++++++++||+|++|++. ++.+++++|.+ ++..++++-+.++..+..
T Consensus 328 -~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~e~~~~l~Dal~~ 389 (517)
T cd03343 328 -IDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDALRV 389 (517)
T ss_pred -hhhCChhhCCccceEEEEEECCeEEEEEEcCCCCceEEEEEECCcHHHHHHHHHHHHHHHHH
Confidence 899999999999999966 44455554433 234455555555555433
No 15
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.97 E-value=1.2e-31 Score=263.26 Aligned_cols=197 Identities=18% Similarity=0.302 Sum_probs=168.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccC---ChHHHHHHhhhcCCCc------hhHHHHHHHHHHhcccCc------cE
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMIS---TSEEIAQVGTISANGE------REIGELIAKAMEKVGKEG------VI 65 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~---~~~~i~~VA~iSa~~d------~~ig~lia~Av~~vg~~G------~I 65 (276)
.||+.|++||++|.+.+++.|+++|+|++ +++.+.+||++|++++ +.+++++++|+.+++++| .|
T Consensus 108 i~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~I 187 (484)
T cd03342 108 VHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPDEPIDLHMV 187 (484)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhcCCccChhHe
Confidence 49999999999999999999999999997 7899999999998754 889999999999999876 34
Q ss_pred EEe--cCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEecccCCcHHH-HHHHHHHHHHhCCCeEEEec
Q 023832 66 TIH--DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTA-VVRVLELALKRQRPLLIVAE 142 (276)
Q Consensus 66 ~ie--~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~~~-i~p~le~i~~~~~pLlIiae 142 (276)
.|. +|+++. ++++++|+.||+||.|||| +.+++||+|+++|++++..++ +.+.+ -.||||+++
T Consensus 188 ~i~ki~ggs~~-ds~~i~G~~~~~~~~~~~m-------~~~~~n~~Ill~~~~le~~~~~~~~~~------~~~lvi~~~ 253 (484)
T cd03342 188 EIMQMQHKSDS-DTKLIRGLVLDHGARHPDM-------PKRVENAYILTCNVSLEYEKTEVNSGF------FYSVVINQK 253 (484)
T ss_pred EEEEecCCChh-hceEEeeEEEecCCCCCCC-------CccccCceEEEEeCCCCCCccccCcEE------EEEEEEeCC
Confidence 442 566776 6999999999999999985 677899999999999987765 32211 147999999
Q ss_pred CccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCccccccCcccCceeeEE---EEeCCc
Q 023832 143 DVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKV---TISKDD 219 (276)
Q Consensus 143 ~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l~~~~~~~LG~a~~v---~v~~~~ 219 (276)
+|+++|+++|..|+ ++||| +.++++|+|||.+|||+++++ ++++++++||+|++| +++.+.
T Consensus 254 ~I~~~al~~l~~~~------I~av~-----~~~~~~l~~ia~~tGa~ii~~-----l~~~~~~~LG~~~~v~~~~ig~~~ 317 (484)
T cd03342 254 GIDPPSLDMLAKEG------ILALR-----RAKRRNMERLTLACGGVAMNS-----VDDLSPECLGYAGLVYERTLGEEK 317 (484)
T ss_pred CccHHHHHHHHHCC------CeEEE-----eCCHHHHHHHHHHhCCEEecc-----cccCChhhCcccceEEEEEECCeE
Confidence 99999999999995 77995 678999999999999999998 999999999999999 566655
Q ss_pred EEEEcCCC
Q 023832 220 TVILDGAG 227 (276)
Q Consensus 220 T~i~~g~g 227 (276)
+++++|.+
T Consensus 318 ~~~i~~~~ 325 (484)
T cd03342 318 YTFIEGVK 325 (484)
T ss_pred EEEEECCC
Confidence 55555443
No 16
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.97 E-value=6.3e-31 Score=259.75 Aligned_cols=226 Identities=16% Similarity=0.223 Sum_probs=185.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccC--ChHHHHHHhhhcCC------CchhHHHHHHHHHHhcccCcc--------
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMIS--TSEEIAQVGTISAN------GEREIGELIAKAMEKVGKEGV-------- 64 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~--~~~~i~~VA~iSa~------~d~~ig~lia~Av~~vg~~G~-------- 64 (276)
.||+.|++||++|.+.+++.|++++.|++ +.++|.+||++|++ +++.+|+++++|+.++|++|.
T Consensus 104 i~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~~~~~~d~~~ 183 (515)
T cd03338 104 IHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKD 183 (515)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhcccccCcCCHHH
Confidence 49999999999999999999999999997 77899999999987 578899999999999998774
Q ss_pred --EEEecCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEecccC-------------------CcH---
Q 023832 65 --ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKI-------------------SNL--- 120 (276)
Q Consensus 65 --I~ie~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i-------------------~~~--- 120 (276)
|..+.|+++++ +++++|+.|+++|.|||+ |+..++||+|+++++++ .++
T Consensus 184 i~i~~~~Ggs~~d-s~lv~Giv~~k~~~~~~~------~p~~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~ 256 (515)
T cd03338 184 IRIVKKLGGTIED-TELVDGLVFTQKASKKAG------GPTRIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILRE 256 (515)
T ss_pred eEEEEecCCChhh-ceeeeeEEEeccccCcCC------CCccccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHH
Confidence 55568999885 799999999999999762 23345556666555533 222
Q ss_pred --HHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCcc
Q 023832 121 --TAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMD 198 (276)
Q Consensus 121 --~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~ 198 (276)
+++.++++++++.|.||||++++|++++++.++.|.+++ .+|+||+ ++++++|+|||.+|||+++++
T Consensus 257 E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~-~~I~av~-----~~~~~~LerIa~~tGa~ii~s----- 325 (515)
T cd03338 257 ERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAK-LKIMVVK-----DIEREEIEFICKTIGCKPVAS----- 325 (515)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHH-CCceEEe-----cCCHHHHHHHHHHHCCEEecc-----
Confidence 668899999999999999999999777777777777775 7889995 889999999999999999998
Q ss_pred ccccCcccCceeeEEEEeC-----------------CcEEEEcCCCCHHHHHHHHHHHHHHHHh
Q 023832 199 LEKVNLDMLGTCKKVTISK-----------------DDTVILDGAGDKKSIEERCEQIRSAIEN 245 (276)
Q Consensus 199 l~~~~~~~LG~a~~v~v~~-----------------~~T~i~~g~g~~~~i~~r~~~l~~~~~~ 245 (276)
++++++++||+|++|++.+ .+|+++||+ +...++++-+.++..+..
T Consensus 326 l~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~-t~~~l~e~~r~i~Dal~~ 388 (515)
T cd03338 326 IDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGS-NKLVLDEAERSLHDALCV 388 (515)
T ss_pred cccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCC-cHHHHHHHHHHHHHHHHH
Confidence 8999999999999998552 236677764 446666666666666544
No 17
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=99.97 E-value=7.2e-31 Score=259.63 Aligned_cols=202 Identities=19% Similarity=0.345 Sum_probs=177.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccCC--hHHHHHHhhhcCCCc-------hhHHHHHHHHHHhccc---Ccc----
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMIST--SEEIAQVGTISANGE-------REIGELIAKAMEKVGK---EGV---- 64 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~~--~~~i~~VA~iSa~~d-------~~ig~lia~Av~~vg~---~G~---- 64 (276)
.||+.|++||++|.+.+++.|+++|+|++. .+.+.++|++|.+++ +.+++|+++|+.++++ +|.
T Consensus 112 i~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~ 191 (519)
T TIGR02339 112 IHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVD 191 (519)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccC
Confidence 499999999999999999999999999974 588999999998644 7799999999999985 675
Q ss_pred ---EEE--ecCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEeccc-------------CCcHHHHHHH
Q 023832 65 ---ITI--HDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTAVVRV 126 (276)
Q Consensus 65 ---I~i--e~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~-------------i~~~~~i~p~ 126 (276)
|.| ..|++++ ++++++|+.|+++|.|| +|+.+++||+|+++|++ +++++++.|+
T Consensus 192 ~~~I~i~k~~Ggs~~-ds~lv~G~vi~~~~~~~-------~m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~ 263 (519)
T TIGR02339 192 LDNIKIEKKTGGSID-DTELVEGIVVDKEPVHP-------GMPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKF 263 (519)
T ss_pred HHHeEEEEccCcChh-cceeEeeEEEecCCCCC-------CCccccCCCcEEEEeccccccccccceEEEECCHHHHHHH
Confidence 446 4788888 69999999999999998 58889999999999998 7888999999
Q ss_pred HH-----------HHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCC
Q 023832 127 LE-----------LALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEEL 195 (276)
Q Consensus 127 le-----------~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~ 195 (276)
++ .+.+.|.||||++++|+++|+++|..+++- +| .+.++++|+|||.+|||+++++
T Consensus 264 l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~------~v-----~~v~~~~L~rIa~~tGa~ii~~-- 330 (519)
T TIGR02339 264 LDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGIL------AV-----RRVKKSDIEKLARATGAKIVSS-- 330 (519)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCE------EE-----ecCCHHHHHHHHHHhCCEEeCc--
Confidence 88 899999999999999999999999877553 56 5888999999999999999998
Q ss_pred CccccccCcccCceeeEEEEeC---CcEEEEcCC
Q 023832 196 GMDLEKVNLDMLGTCKKVTISK---DDTVILDGA 226 (276)
Q Consensus 196 g~~l~~~~~~~LG~a~~v~v~~---~~T~i~~g~ 226 (276)
++++++++||+|++|++.+ +.++++.|.
T Consensus 331 ---~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~ 361 (519)
T TIGR02339 331 ---IKEITESDLGYAGLVEERKVGDDKMTFVEGC 361 (519)
T ss_pred ---hhhCChhhccCCceEEEEEECCeEEEEEEcC
Confidence 8899999999999999764 555555443
No 18
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.97 E-value=5.4e-30 Score=254.36 Aligned_cols=208 Identities=16% Similarity=0.273 Sum_probs=176.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhc-CcccC--ChHHHHHHhhhcCC------CchhHHHHHHHHHHhcc---cCccE---
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSR-ARMIS--TSEEIAQVGTISAN------GEREIGELIAKAMEKVG---KEGVI--- 65 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~-s~~v~--~~~~i~~VA~iSa~------~d~~ig~lia~Av~~vg---~~G~I--- 65 (276)
.||+.|++||+.|++.+++.|+++ ++|++ +.+++.+||++|.+ +++.+++++++|+.+++ .+|.+
T Consensus 108 i~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~ 187 (536)
T TIGR02340 108 VHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYP 187 (536)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccc
Confidence 499999999999999999999985 99998 77889999999975 67899999999999997 34543
Q ss_pred ----EE--ecCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEecccCCcHH------------------
Q 023832 66 ----TI--HDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLT------------------ 121 (276)
Q Consensus 66 ----~i--e~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~~------------------ 121 (276)
.+ ..|++++ ++++++||.|++||.|| +|+.+++||+|+++|++++..+
T Consensus 188 ~~~I~i~k~~G~s~~-~s~~i~Gi~i~~~~~~~-------~m~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~ 259 (536)
T TIGR02340 188 IKAVNILKAHGGSAR-ESYLVKGYALNCTRASQ-------QMPKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGI 259 (536)
T ss_pred hHHeEEEEecCCCcc-ccEEEEEEEEecccCCC-------CCcceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHH
Confidence 33 4888885 79999999999999998 6889999999999999886543
Q ss_pred ------HHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCC
Q 023832 122 ------AVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEEL 195 (276)
Q Consensus 122 ------~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~ 195 (276)
.+.+.++.+.+.|.+|+|..++|++.|+++|+.+++ .++ ++.++++|+|||.+|||+++++..
T Consensus 260 ~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I------~~i-----~rv~~~~LerIa~~tGa~ii~~~~ 328 (536)
T TIGR02340 260 RQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGA------MGV-----RRCKKEDLKRIAKATGGTLVSTLA 328 (536)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCc------EEE-----ecCCHHHHHHHHHHhCCEEecchh
Confidence 244778888899999988888999999999999954 466 577799999999999999999976
Q ss_pred Cc-cccccCcccCceeeEEE---EeCCcEEEEcCCC
Q 023832 196 GM-DLEKVNLDMLGTCKKVT---ISKDDTVILDGAG 227 (276)
Q Consensus 196 g~-~l~~~~~~~LG~a~~v~---v~~~~T~i~~g~g 227 (276)
++ ..+++++++||+|++|+ ++++.++++.|.+
T Consensus 329 ~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~ 364 (536)
T TIGR02340 329 DLEGEETFDASYLGFADEVVEERIADDECILIKGTK 364 (536)
T ss_pred hcCccccccccccccCceEEEEEECCeEEEEEEcCC
Confidence 65 45667888899999999 7666666665544
No 19
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.97 E-value=9.8e-30 Score=252.00 Aligned_cols=206 Identities=17% Similarity=0.282 Sum_probs=173.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHh-cCcccC--ChHHHHHHhhhcCC------CchhHHHHHHHHHHhcc---cCcc----
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKS-RARMIS--TSEEIAQVGTISAN------GEREIGELIAKAMEKVG---KEGV---- 64 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~-~s~~v~--~~~~i~~VA~iSa~------~d~~ig~lia~Av~~vg---~~G~---- 64 (276)
.||+.|++||++|.+.+++.|++ +++|++ +++.+.++|++|.+ +++.+++++++|+.+++ .+|.
T Consensus 104 i~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~ 183 (527)
T cd03335 104 IHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYP 183 (527)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccC
Confidence 49999999999999999999996 899998 78889999999964 34889999999999996 3343
Q ss_pred ---EEE--ecCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEecccCCcH-------------------
Q 023832 65 ---ITI--HDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNL------------------- 120 (276)
Q Consensus 65 ---I~i--e~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~------------------- 120 (276)
|.| ..|++++ ++++++|+.|++||.|| +|+.+++||+|+++|++++..
T Consensus 184 ~~~I~i~~~~Ggs~~-~s~li~Givi~~~~~~~-------~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~ 255 (527)
T cd03335 184 IKAVNILKAHGKSAK-ESYLVNGYALNCTRASQ-------GMPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKI 255 (527)
T ss_pred HHHeEEEEecCcChh-hcceeeeEEEecccCCC-------CCcccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHH
Confidence 344 3788888 69999999999999998 588899999999999988652
Q ss_pred -----HHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCC
Q 023832 121 -----TAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEEL 195 (276)
Q Consensus 121 -----~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~ 195 (276)
+.+.+.++.+.+.|.||||++++|+++|+++|..++ +.++ .+.++++|+|||.+|||+++++..
T Consensus 256 ~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~------I~~v-----~~v~~~~lerIa~~tGa~ii~~~~ 324 (527)
T cd03335 256 RQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAG------AMAV-----RRVKKEDLRRIAKATGATLVSTLA 324 (527)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC------cEEE-----EeCCHHHHHHHHHHhCCEEecChh
Confidence 124477889999999999999999999999999984 4477 588999999999999999999965
Q ss_pred Cc-cccccCcccCceeeEEE---EeCCcEEEEcC
Q 023832 196 GM-DLEKVNLDMLGTCKKVT---ISKDDTVILDG 225 (276)
Q Consensus 196 g~-~l~~~~~~~LG~a~~v~---v~~~~T~i~~g 225 (276)
++ ..+++++++||+|++|+ ++.+.+++++|
T Consensus 325 ~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g 358 (527)
T cd03335 325 NLEGEETFDPSYLGEAEEVVQERIGDDELILIKG 358 (527)
T ss_pred hcCcccccCHhhCccCceEEEEEECCeEEEEEEc
Confidence 54 33556777999999999 66555555544
No 20
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.97 E-value=4e-29 Score=247.92 Aligned_cols=204 Identities=17% Similarity=0.292 Sum_probs=168.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCccc---CChHHHHHHhhhcCC------CchhHHHHHHHHHHhcccCcc------E
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMI---STSEEIAQVGTISAN------GEREIGELIAKAMEKVGKEGV------I 65 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v---~~~~~i~~VA~iSa~------~d~~ig~lia~Av~~vg~~G~------I 65 (276)
.||+.|++||++|.+.+++.|+++++|+ .+.+.+.++|++|.+ .++.+++++++|+.+++++|. |
T Consensus 112 ihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I 191 (531)
T TIGR02347 112 IHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEQIDLFMV 191 (531)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhcCCCCChhHe
Confidence 4999999999999999999999999774 477889999999974 378999999999999998764 3
Q ss_pred EE-e-cCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEecccCCcHH----------------------
Q 023832 66 TI-H-DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLT---------------------- 121 (276)
Q Consensus 66 ~i-e-~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~~---------------------- 121 (276)
.+ + .|++.. ++++++|+.||+||.|||| +.+++||+||++|++++..+
T Consensus 192 ~i~k~~g~s~~-ds~~v~Giv~~~~~~~~~~-------~~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E 263 (531)
T TIGR02347 192 EIMEMKHKSAT-DTTLIRGLVLDHGARHPDM-------PRRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAE 263 (531)
T ss_pred EEEEecCCCcc-ccEEEeeEEEecCcCCCCC-------ceeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHH
Confidence 44 2 466665 6999999999999999985 56899999999999886442
Q ss_pred --HHHHHHHHHHHhC---------CC-eEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCe
Q 023832 122 --AVVRVLELALKRQ---------RP-LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGD 189 (276)
Q Consensus 122 --~i~p~le~i~~~~---------~p-LlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~ 189 (276)
.+...++++.+.| .+ |++..++|++.++++|..+++ +|+ ++.++++|+|||.+|||+
T Consensus 264 ~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I------~~i-----~rv~~~~le~ia~~tGa~ 332 (531)
T TIGR02347 264 RKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGI------MAL-----RRAKRRNMERLTLACGGE 332 (531)
T ss_pred HHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCc------eEE-----ccCCHHHHHHHHHHhCCE
Confidence 2344567777655 13 677778999999999999855 477 577799999999999999
Q ss_pred EEecCCCccccccCcccCceeeEE---EEeCCcEEEEcCCCC
Q 023832 190 LITEELGMDLEKVNLDMLGTCKKV---TISKDDTVILDGAGD 228 (276)
Q Consensus 190 vi~~~~g~~l~~~~~~~LG~a~~v---~v~~~~T~i~~g~g~ 228 (276)
++++ ++++++++||+|++| +++++.++++.|.++
T Consensus 333 ~i~~-----l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~ 369 (531)
T TIGR02347 333 ALNS-----VEDLTPECLGWAGLVYETSIGEEKYTFIEEVKN 369 (531)
T ss_pred Eecc-----cccCCccccccceEEEEEEECCeEEEEEEcCCC
Confidence 9988 999999999999999 677666666665443
No 21
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.96 E-value=3.3e-29 Score=248.51 Aligned_cols=226 Identities=16% Similarity=0.233 Sum_probs=183.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCc-ccCC---hHHHHHHhhhc--C---CCchhHHHHHHHHHHhcccCc--cEEEe-
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRAR-MIST---SEEIAQVGTIS--A---NGEREIGELIAKAMEKVGKEG--VITIH- 68 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~-~v~~---~~~i~~VA~iS--a---~~d~~ig~lia~Av~~vg~~G--~I~ie- 68 (276)
.||+.|++||+.|++.+++.|++++. |+++ .+.+.++|.+| + ++++.+++|+++|+.++|++| .+.++
T Consensus 114 i~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~~ 193 (531)
T TIGR02346 114 LHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQYGNEDFLAQLVAKACSTVMPKNPENFNVDN 193 (531)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHhhcCCCcCChhH
Confidence 49999999999999999999999996 8754 67899996655 3 348999999999999999766 44443
Q ss_pred ------cCCcceeeEEEEEeEEEeee---------------ccCcccccccc-cceeeecCceEEEecccCCcHHHHHHH
Q 023832 69 ------DGKTLYNELEVVEGMKLDRG---------------YISPYFITNQK-NQKCELEDPLILVHEKKISNLTAVVRV 126 (276)
Q Consensus 69 ------~g~~~~~~l~v~eG~~fd~g---------------y~spyfvt~~~-~~~~~l~~p~Ill~d~~i~~~~~i~p~ 126 (276)
.|++++ ++++++|+.||+| |.+|||+++++ ++.+++++|+.+....+. ..+.+.++
T Consensus 194 I~i~ki~G~s~~-ds~li~Gi~~~~~~~~~~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-e~~~i~~~ 271 (531)
T TIGR02346 194 IRVSKIMGGSIS-NSEVLKGMVFNREAEGSVKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKG-EENQIEAY 271 (531)
T ss_pred eeEEEecCCChh-hceeEeeeEEeccCCCCceeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHH-HHHHHHHH
Confidence 788888 6999999999999 88888888877 778888888888744443 35789999
Q ss_pred HHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCccccccCccc
Q 023832 127 LELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDM 206 (276)
Q Consensus 127 le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l~~~~~~~ 206 (276)
++++.+.|+||||.+++|+++++++|..+ +|+|||.|+++ +|+|||.+|||+++++ ++++++++
T Consensus 272 l~~i~~~g~~lvi~~~~I~d~~~~~l~~~------~I~av~~~~~~-----~l~~Ia~~tGa~ii~~-----l~~~~~~~ 335 (531)
T TIGR02346 272 IKAIADSGVNVIVTGGSVGDMALHYCEKY------NIMVLKIPSKF-----ELRRLCKTVGATPLAR-----LGAPQPEE 335 (531)
T ss_pred HHHHHHcCCcEEEECCCcCHHHHHHHHHC------CcEEEecCCHH-----HHHHHHHHHCCEEecc-----cccCCHhH
Confidence 99999999999999889999999999866 56799888866 7889999999999988 89999999
Q ss_pred CceeeEEEEeC-----------------CcEEEEcCCCCHHHHHHHHHHHHHHHHh
Q 023832 207 LGTCKKVTISK-----------------DDTVILDGAGDKKSIEERCEQIRSAIEN 245 (276)
Q Consensus 207 LG~a~~v~v~~-----------------~~T~i~~g~g~~~~i~~r~~~l~~~~~~ 245 (276)
||+|++|++.+ ..|++++| ++...++++-+.++..+..
T Consensus 336 LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG-~t~~~l~E~er~i~DAl~~ 390 (531)
T TIGR02346 336 IGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRG-STKNLLDDIERAIDDGVNV 390 (531)
T ss_pred ccccceEEEEEECCEEEEEEEccCCCCCeEEEEEEC-CCHHHHHHHHHHHHHHHHH
Confidence 99999998652 13555555 3334455555555554433
No 22
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.96 E-value=3.4e-29 Score=248.10 Aligned_cols=190 Identities=22% Similarity=0.339 Sum_probs=157.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccC----ChHHHHHHhhhcCCC------chhHHHHHHHHHHhcccC-------c
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMIS----TSEEIAQVGTISANG------EREIGELIAKAMEKVGKE-------G 63 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~----~~~~i~~VA~iSa~~------d~~ig~lia~Av~~vg~~-------G 63 (276)
.||..|++||++|.+.+++.|+++|+|++ +.+.+.++|++|.+. .+.+++++.+|+..+... .
T Consensus 119 i~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~ 198 (526)
T cd03339 119 IHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFE 198 (526)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchH
Confidence 49999999999999999999999999996 568899999999762 244677777777665321 2
Q ss_pred cEEEe--cCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEecc-----------c--CCcHHH------
Q 023832 64 VITIH--DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK-----------K--ISNLTA------ 122 (276)
Q Consensus 64 ~I~ie--~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~-----------~--i~~~~~------ 122 (276)
.|.|+ .|++++ ++++++|+.|++||.||||.+ .++||+|+++++ + ++++++
T Consensus 199 ~I~i~ki~Ggs~~-dS~~v~Givi~~~~~~~~m~~-------~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~ 270 (526)
T cd03339 199 LIKVEGKVGGRLE-DTKLVKGIVIDKDFSHPQMPK-------EVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQE 270 (526)
T ss_pred HeEEEEecCcCHH-HcceeeeEEEecccCCCCCCc-------eecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHH
Confidence 45554 688887 599999999999999998754 445666666664 3 566655
Q ss_pred -----HHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCc
Q 023832 123 -----VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGM 197 (276)
Q Consensus 123 -----i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~ 197 (276)
+.++++.+.+.|.||||++++|+++|+++|..|++. |||. ..+.+|+|||.+|||+++++
T Consensus 271 ~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~------av~~-----v~~~~LerIa~~tGa~ii~~---- 335 (526)
T cd03339 271 YEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLP------AVRW-----VGGVEIELIAIATGGRIVPR---- 335 (526)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCE------EEEe-----CCHHHHHHHHHHhCCEEecc----
Confidence 888899999999999999999999999999999886 8864 45677999999999999998
Q ss_pred cccccCcccCceeeEEE
Q 023832 198 DLEKVNLDMLGTCKKVT 214 (276)
Q Consensus 198 ~l~~~~~~~LG~a~~v~ 214 (276)
++++++++||+|+.|+
T Consensus 336 -l~~l~~~~LG~~~~v~ 351 (526)
T cd03339 336 -FEDLSPEKLGKAGLVR 351 (526)
T ss_pred -hhhCChhhcccCceEE
Confidence 9999999999999987
No 23
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.96 E-value=3e-28 Score=241.11 Aligned_cols=223 Identities=20% Similarity=0.307 Sum_probs=188.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccCC------hHHHHHHhhhcCC------CchhHHHHHHHHHHhcccCc---cE
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMIST------SEEIAQVGTISAN------GEREIGELIAKAMEKVGKEG---VI 65 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~~------~~~i~~VA~iSa~------~d~~ig~lia~Av~~vg~~G---~I 65 (276)
.||+.|++||++|.+.+++.|+++|+|+++ .+.+.++|++|.+ +++.+++++++|+.++++++ .|
T Consensus 112 i~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~I 191 (522)
T cd03340 112 VHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDDDLDLDMI 191 (522)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHhcccCChhHh
Confidence 499999999999999999999999999975 5669999999854 67899999999999999877 55
Q ss_pred EEe--cCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEecccC-------------CcHHH--------
Q 023832 66 TIH--DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKI-------------SNLTA-------- 122 (276)
Q Consensus 66 ~ie--~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i-------------~~~~~-------- 122 (276)
.|+ .|++++ ++++++|+.|+++|.+|||.+. +..++||+||++++++ +++.+
T Consensus 192 ~i~~i~Ggs~~-ds~lv~Giv~~k~~~~~~~~~~----~~~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E 266 (522)
T cd03340 192 GIKKVPGGSLE-DSQLVNGVAFKKTFSYAGFEQQ----PKKFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAE 266 (522)
T ss_pred eEeeecCCChh-hceeeeeEEEecccCccccccC----CccccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHH
Confidence 554 788888 4999999999999999998754 4569999999999984 44333
Q ss_pred ---HHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCccc
Q 023832 123 ---VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDL 199 (276)
Q Consensus 123 ---i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l 199 (276)
+.+.++.+.+.|.++++....|++.++++|..+++- ++ ++.++++|++||.+|||+++++ +
T Consensus 267 ~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~------~~-----~~v~~~~l~rIa~~tGa~ii~~-----l 330 (522)
T cd03340 267 WKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIF------CA-----GRVPEEDLKRVAQATGGSIQTT-----V 330 (522)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcE------EE-----EeCCHHHHHHHHHHHCCEEeec-----c
Confidence 677789999999888888889999999999999663 56 6778999999999999999999 8
Q ss_pred cccCcccCceeeEEE---E-------------eCCcEEEEcCCCCHHHHHHHHHHHHHHHHh
Q 023832 200 EKVNLDMLGTCKKVT---I-------------SKDDTVILDGAGDKKSIEERCEQIRSAIEN 245 (276)
Q Consensus 200 ~~~~~~~LG~a~~v~---v-------------~~~~T~i~~g~g~~~~i~~r~~~l~~~~~~ 245 (276)
+++++++||+|++|+ + .+.+|++++|+. ...++++-+.++..+..
T Consensus 331 ~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t-~~~l~E~er~i~Dal~~ 391 (522)
T cd03340 331 SNITDDVLGTCGLFEERQVGGERYNIFTGCPKAKTCTIILRGGA-EQFIEEAERSLHDAIMI 391 (522)
T ss_pred ccCCccccccceEEEEEEECCEEEEEEECCCCCceEEEEEECCC-HHHHHHHHHHHHHHHHH
Confidence 999999999999998 4 467899999964 45577766666665543
No 24
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.96 E-value=2.1e-29 Score=249.44 Aligned_cols=192 Identities=17% Similarity=0.270 Sum_probs=161.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccC-----ChHHHHHHhhhcCC------CchhHHHHHHHHHHhcccC-------
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMIS-----TSEEIAQVGTISAN------GEREIGELIAKAMEKVGKE------- 62 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~-----~~~~i~~VA~iSa~------~d~~ig~lia~Av~~vg~~------- 62 (276)
.||+.|++||++|.+.+++.|+++|+|++ +.+.+.++|++|.+ +++.+++++++|+.+++++
T Consensus 113 i~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~~I 192 (522)
T TIGR02345 113 VHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDIDDLDLKLI 192 (522)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhccCChhHh
Confidence 49999999999999999999999999998 55789999999965 6899999999999999875
Q ss_pred ccEEEecCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEecccCCcH-------------HH-------
Q 023832 63 GVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNL-------------TA------- 122 (276)
Q Consensus 63 G~I~ie~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~-------------~~------- 122 (276)
+++++ +|+++++ +++++|+.|++||.||||.+ |+..++||+||++|++++.. ++
T Consensus 193 ~i~ki-~Ggs~~d-s~~v~Giv~~~~~~~~~~~~----~~~~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~ 266 (522)
T TIGR02345 193 GVKKV-QGGSLQD-SVLVNGVAFKKTFSYAGFEQ----QPKKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDA 266 (522)
T ss_pred eEEee-cCCCHHh-cceecceEEecccCcccccc----CCceeccceEEEEecCcccCccccceEEEECCHHHHHHHHHH
Confidence 34444 7888885 88999999999999999975 44679999999999987432 22
Q ss_pred ----HHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCcc
Q 023832 123 ----VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMD 198 (276)
Q Consensus 123 ----i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~ 198 (276)
+...++.+.+.|.+++++...|++.++++|..+++- ++ ++..+.++++||.+|||+++++
T Consensus 267 e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~------~~-----~~v~~~dl~ria~~tga~ii~~----- 330 (522)
T TIGR02345 267 EWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIF------CA-----GRVSDEDLKRVVKACGGSIQST----- 330 (522)
T ss_pred HHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcE------EE-----ecCCHHHHHHHHHHhCCeEEcc-----
Confidence 344466677778777777778999999999888553 55 6777888999999999999998
Q ss_pred ccccCcccCceeeEEE
Q 023832 199 LEKVNLDMLGTCKKVT 214 (276)
Q Consensus 199 l~~~~~~~LG~a~~v~ 214 (276)
++++++++||+|+.++
T Consensus 331 ~~~l~~~~LG~~~~ie 346 (522)
T TIGR02345 331 TSDLEADVLGTCALFE 346 (522)
T ss_pred hhhCChhhccCCceEE
Confidence 8999999999999875
No 25
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.96 E-value=4.9e-28 Score=236.21 Aligned_cols=202 Identities=33% Similarity=0.524 Sum_probs=173.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcc--cCChHHHHHHhhhcCC------CchhHHHHHHHHHHhccc------CccEE
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARM--ISTSEEIAQVGTISAN------GEREIGELIAKAMEKVGK------EGVIT 66 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~--v~~~~~i~~VA~iSa~------~d~~ig~lia~Av~~vg~------~G~I~ 66 (276)
.||+.|++||+.|.+.+++.|+++++| +.+.+++.++|++|.+ +++.+++++++|+.++++ .+.|+
T Consensus 104 i~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~~~~~~~I~ 183 (464)
T cd00309 104 IHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGDVDLGVIR 183 (464)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccccchHHHHHHHHHHHHHhccccCccccceEE
Confidence 499999999999999999999999999 6688999999999987 789999999999999998 68999
Q ss_pred Ee--cCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEecC-
Q 023832 67 IH--DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAED- 143 (276)
Q Consensus 67 ie--~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae~- 143 (276)
|+ .|+++. +++++.|+.|++||.+||| +.+++||+|++++++++. ||++++
T Consensus 184 i~k~~gg~~~-ds~li~Gi~~~~~~~~~~m-------~~~~~n~~Ili~~~~Le~------------------lIi~~~~ 237 (464)
T cd00309 184 VEKKKGGSLE-DSELVVGMVFDKGYLSPYM-------PKRLENAKILLLDCKLEY------------------VVIAEKG 237 (464)
T ss_pred EEecCCCCcc-cceeeeeEEEecCCCCCCC-------ceeecCceEEEEecCcce------------------EEecCCC
Confidence 97 577777 5899999999999999985 778999999999999987 788885
Q ss_pred ccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCccccccCcccCceeeEEEEeC------
Q 023832 144 VESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISK------ 217 (276)
Q Consensus 144 i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l~~~~~~~LG~a~~v~v~~------ 217 (276)
|+++|+++|..+ +++||+ +.++++|+|||.+|||+++++ ++++++++||+|++|++.+
T Consensus 238 I~~~al~~L~~~------~I~~v~-----~~~~~~L~~Ia~~tGa~ii~~-----~~~~~~~~lG~~~~v~~~~~g~~~~ 301 (464)
T cd00309 238 IDDEALHYLAKL------GIMAVR-----RVRKEDLERIAKATGATIVSR-----LEDLTPEDLGTAGLVEETKIGDEKY 301 (464)
T ss_pred cCHHHHHHHHHC------CeEEEE-----eCCHHHHHHHHHHhCCEEecc-----cccCCcccCccccEEEEEEEcCeeE
Confidence 999999999996 567885 688999999999999999998 8889999999999988652
Q ss_pred ----------CcEEEEcCCCCHHHHHHHHHHHHHHHHh
Q 023832 218 ----------DDTVILDGAGDKKSIEERCEQIRSAIEN 245 (276)
Q Consensus 218 ----------~~T~i~~g~g~~~~i~~r~~~l~~~~~~ 245 (276)
-+|++++|+ +...++++-+.++..+..
T Consensus 302 ~~~~~~~~~~~~TIllrG~-t~~~l~e~~r~i~dal~~ 338 (464)
T cd00309 302 TFIEGCKGGKVATILLRGA-TEVELDEAERSLHDALCA 338 (464)
T ss_pred EEEEecCCCCEEEEEEeCC-cHHHHHHHHHHHHHHHHH
Confidence 346666653 445566666666665544
No 26
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.96 E-value=1.5e-28 Score=243.88 Aligned_cols=190 Identities=22% Similarity=0.351 Sum_probs=156.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccCC----hHHHHHHhhhcCCC------chhHHHHHHHHHHhcccC-------c
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMIST----SEEIAQVGTISANG------EREIGELIAKAMEKVGKE-------G 63 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~~----~~~i~~VA~iSa~~------d~~ig~lia~Av~~vg~~-------G 63 (276)
.||+.|++||+.|.+.+++.|+++++|++. .+.+.++|++|.+. .+.+++++.+|+..+... .
T Consensus 123 ihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~ 202 (532)
T TIGR02343 123 IHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFD 202 (532)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHH
Confidence 499999999999999999999999999853 57899999999751 234666666666665321 1
Q ss_pred cEEEe--cCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEecc-----------c--CCcHHHH-----
Q 023832 64 VITIH--DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEK-----------K--ISNLTAV----- 123 (276)
Q Consensus 64 ~I~ie--~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~-----------~--i~~~~~i----- 123 (276)
.|.|+ .|+++++ +++++|+.|++||.||||. ..++||+|+++++ + +++++++
T Consensus 203 ~I~i~ki~Ggs~~d-s~~v~Gi~i~~~~~~~~m~-------~~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~ 274 (532)
T TIGR02343 203 LIKVEGKVGGSLED-TKLIKGIIIDKDFSHPQMP-------KEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQK 274 (532)
T ss_pred HeeEEEecCCCccc-ceeEeeEEEecCcCCCCCC-------eeecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHH
Confidence 45554 6888885 7999999999999999865 4455677766665 3 5666665
Q ss_pred ------HHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCc
Q 023832 124 ------VRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGM 197 (276)
Q Consensus 124 ------~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~ 197 (276)
.++|+++.+.|.||||++++|+++|+++|..|++. +|| +..+++|+|||.+|||+++++
T Consensus 275 ~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~------~v~-----~~~~~~l~~Ia~~tGa~~i~~---- 339 (532)
T TIGR02343 275 YEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLP------AVR-----WVGGHELELIAIATGGRIVPR---- 339 (532)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcE------EEE-----cCCHHHHHHHHHHhCCEEecc----
Confidence 88999999999999999999999999999999776 675 445677999999999999998
Q ss_pred cccccCcccCceeeEEE
Q 023832 198 DLEKVNLDMLGTCKKVT 214 (276)
Q Consensus 198 ~l~~~~~~~LG~a~~v~ 214 (276)
++++++++||+|++|+
T Consensus 340 -l~~~~~~~LG~a~~v~ 355 (532)
T TIGR02343 340 -FEELSEDKLGKAGLVR 355 (532)
T ss_pred -cccCCHhHCcccceEE
Confidence 9999999999999887
No 27
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.96 E-value=2.9e-28 Score=241.07 Aligned_cols=225 Identities=19% Similarity=0.279 Sum_probs=180.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccC--ChHHHHHHhhhcCCCch-------hHHHHHHHHHHhccc---Cc-----
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMIS--TSEEIAQVGTISANGER-------EIGELIAKAMEKVGK---EG----- 63 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~--~~~~i~~VA~iSa~~d~-------~ig~lia~Av~~vg~---~G----- 63 (276)
.||+.|++||++|.+.+++.|+++++|++ +.+.+.++|++|.+ ++ .|++++++|+.+++. +|
T Consensus 105 i~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~-sK~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~ 183 (517)
T TIGR02342 105 IHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSATTSLS-SKVVSQYSSLLAPLAVDAVLKVIDPENDKNVDLN 183 (517)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHhccccCCccCHH
Confidence 49999999999999999999999999997 77889999999975 44 459999999999986 34
Q ss_pred cEEEe--cCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEecccCCc----------------------
Q 023832 64 VITIH--DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISN---------------------- 119 (276)
Q Consensus 64 ~I~ie--~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~---------------------- 119 (276)
.|.|. .|++++ ++++++|+.|+++|.|+. .|+..++||+|+++++.++.
T Consensus 184 ~i~i~k~~Ggs~~-ds~li~Givl~k~~~~~~------~mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~ 256 (517)
T TIGR02342 184 DIKVVKKLGGTID-DTELIEGLVFTQKASRSA------GGPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLK 256 (517)
T ss_pred HeeEEeccCCChh-hcEEEeeEEEeccccccC------CCCccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHH
Confidence 34443 566666 699999999999999841 35556778888888775532
Q ss_pred --HHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCc
Q 023832 120 --LTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGM 197 (276)
Q Consensus 120 --~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~ 197 (276)
.+++.++++++.+.|.||||++++|++++++.++.|.+.+ .+|+||+ ++++++|+|||.+|||+++++
T Consensus 257 ~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~-~~I~av~-----~v~~~~LerIa~~tGa~ii~~---- 326 (517)
T TIGR02342 257 EERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAK-MKIMVVK-----DIEREEVEFICKTIGCKPIAS---- 326 (517)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhh-CCceEEe-----cCCHHHHHHHHHHHCCEEEcc----
Confidence 2568899999999999999999999777777777777766 7888995 889999999999999999998
Q ss_pred cccccCcccCceeeEEE-Ee----------------CCcEEEEcCCCCHHHHHHHHHHHHHHHHh
Q 023832 198 DLEKVNLDMLGTCKKVT-IS----------------KDDTVILDGAGDKKSIEERCEQIRSAIEN 245 (276)
Q Consensus 198 ~l~~~~~~~LG~a~~v~-v~----------------~~~T~i~~g~g~~~~i~~r~~~l~~~~~~ 245 (276)
++++++++||+|+.|+ ++ +..|+++|| +++..++++-+.++..+..
T Consensus 327 -~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG-~t~~~l~E~er~i~DAl~~ 389 (517)
T TIGR02342 327 -IDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRG-SNKLVIDEAERSLHDALCV 389 (517)
T ss_pred -hhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeC-CcHHHHHHHHHHHHHHHHH
Confidence 8999999999999998 33 233666666 3445566666666655543
No 28
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.95 E-value=3.4e-27 Score=233.73 Aligned_cols=219 Identities=18% Similarity=0.282 Sum_probs=177.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccC--ChHHHHHHhhhc--CC----CchhHHHHHHHHHHhcccCc---------
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMIS--TSEEIAQVGTIS--AN----GEREIGELIAKAMEKVGKEG--------- 63 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~--~~~~i~~VA~iS--a~----~d~~ig~lia~Av~~vg~~G--------- 63 (276)
.||..|++||++|.+.+++.|+++++|++ +.+.+.++|+++ ++ +++.+++++++|+..++.++
T Consensus 112 i~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~ 191 (525)
T TIGR02344 112 IHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDI 191 (525)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccCh
Confidence 49999999999999999999999999997 667899999655 33 36889999999999998754
Q ss_pred --cEEEe--cCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEecccCCc-------------HHHHHHH
Q 023832 64 --VITIH--DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISN-------------LTAVVRV 126 (276)
Q Consensus 64 --~I~ie--~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~-------------~~~i~p~ 126 (276)
+|+|+ .|++++| +++++|+.|++++.++ +|+.+++||+||+++++++. ++++.++
T Consensus 192 ~~~I~i~ki~Gg~~~d-S~lv~Gvvi~k~~~~~-------~m~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~ 263 (525)
T TIGR02344 192 KRYAKVEKIPGGDIED-SCVLKGVMINKDVTHP-------KMRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRI 263 (525)
T ss_pred hhceEEEEecCCChHh-cCcccceEEecccCCC-------CCccccCCCCEEEEecccccccccccceEEeCCHHHHHHH
Confidence 36776 5999986 9999999999987665 68889999999999998865 4778887
Q ss_pred HH-----------HHHHhCCCeEEEec-CccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecC
Q 023832 127 LE-----------LALKRQRPLLIVAE-DVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEE 194 (276)
Q Consensus 127 le-----------~i~~~~~pLlIiae-~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~ 194 (276)
++ ++.+.| |+||+++ .|++.++++|..+++ +|+ +++++++|+|||.+|||+++++
T Consensus 264 l~~E~~~l~~~v~~i~~~~-~~vIi~~k~I~dla~~~l~~~~I------~av-----~~v~~~~LerIa~~tGa~ii~~- 330 (525)
T TIGR02344 264 LQMEEEYVQLMCEDIIAVK-PDLVITEKGVSDLAQHYLLKANI------SAI-----RRVRKTDNNRIARACGATIVNR- 330 (525)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCEEEeCCCccHHHHHHHhHCCc------eEE-----ecCCHHHHHHHHHHhCCeEecc-
Confidence 66 777766 8888886 899999999988744 476 7999999999999999999998
Q ss_pred CCccccccCcccCce-eeEEEEe---CCc-------------EEEEcCCCCHHHHHHHHHHHHHHHHh
Q 023832 195 LGMDLEKVNLDMLGT-CKKVTIS---KDD-------------TVILDGAGDKKSIEERCEQIRSAIEN 245 (276)
Q Consensus 195 ~g~~l~~~~~~~LG~-a~~v~v~---~~~-------------T~i~~g~g~~~~i~~r~~~l~~~~~~ 245 (276)
++++++++||+ |+.|++. .+. |+++||+ +...++++-+.++..+..
T Consensus 331 ----l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~~~~TIlLrG~-t~~~l~E~er~l~DAl~~ 393 (525)
T TIGR02344 331 ----PEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGA-SKDVLNEIERNLQDAMAV 393 (525)
T ss_pred ----hhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCCCEEEEEEEcC-CHHHHHHHHHHHHHHHHH
Confidence 89999999998 9878762 233 5555552 334555555555555533
No 29
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=99.94 E-value=1.4e-26 Score=229.75 Aligned_cols=225 Identities=19% Similarity=0.284 Sum_probs=165.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccCC-----hHHHHHHhhhcCCCchhHHHHHHHHHHhcccCccEEEecCCccee
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMIST-----SEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYN 75 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~~-----~~~i~~VA~iSa~~d~~ig~lia~Av~~vg~~G~I~ie~g~~~~~ 75 (276)
.||+.|++||++|.+.+++.|+++|+|+++ .+.|.+||++|.+ . .++...++++.+++.+++++++++..+++
T Consensus 123 i~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l~-s-k~~~~~~~~l~~i~~~av~~i~~~~~~~~ 200 (533)
T PTZ00212 123 IHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLS-S-KLLTVEKDHFAKLAVDAVLRLKGSGNLDY 200 (533)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHhc-c-cccchhHHHHHHHHHHHHHHHhccCCccc
Confidence 499999999999999999999999999975 5789999986532 1 14444455555555555555544444443
Q ss_pred -eEEEEEeEEEeeeccCcccccccc---cceeeecCceEEEecccC--------------CcHHHHHH-----------H
Q 023832 76 -ELEVVEGMKLDRGYISPYFITNQK---NQKCELEDPLILVHEKKI--------------SNLTAVVR-----------V 126 (276)
Q Consensus 76 -~l~v~eG~~fd~gy~spyfvt~~~---~~~~~l~~p~Ill~d~~i--------------~~~~~i~p-----------~ 126 (276)
++.-+.|..|+.+|++|||+++.+ .|+.+++||+||++|+++ ++++++.. .
T Consensus 201 I~i~ki~Ggsi~ds~lv~G~v~~~~~~~~~~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~ 280 (533)
T PTZ00212 201 IQIIKKPGGTLRDSYLEDGFILEKKIGVGQPKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNK 280 (533)
T ss_pred eEEEEecCcCccccEEEEeEEEecccCCCCCccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHH
Confidence 445555777777777777776665 689999999999999987 66655332 3
Q ss_pred HHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCccccccCccc
Q 023832 127 LELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDM 206 (276)
Q Consensus 127 le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l~~~~~~~ 206 (276)
++.+.+.|..+++....|++.++++|..+++ +||| +..+.+++|||.+|||+++++ ++++++++
T Consensus 281 v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I------~avr-----~v~~~~l~rIa~~tGa~iis~-----l~~~~~~~ 344 (533)
T PTZ00212 281 VDKILAHGCNVFINRQLIYNYPEQLFAEAGI------MAIE-----HADFDGMERLAAALGAEIVST-----FDTPEKVK 344 (533)
T ss_pred HHHHHhcCCeEEEeCCCccHHHHHHHHHCCC------EEEe-----cCCHHHHHHHHHHhCCEEeec-----CCCCCHHH
Confidence 7778888977777777999999999999955 5885 566788999999999999998 89999999
Q ss_pred CceeeEEE---EeCCc-------------EEEEcCCCCHHHHHHHHHHHHHHHH
Q 023832 207 LGTCKKVT---ISKDD-------------TVILDGAGDKKSIEERCEQIRSAIE 244 (276)
Q Consensus 207 LG~a~~v~---v~~~~-------------T~i~~g~g~~~~i~~r~~~l~~~~~ 244 (276)
||+|++|+ ++.+. |+++||+ +...++++-+.++..+.
T Consensus 345 LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~-t~~~l~E~er~i~DAl~ 397 (533)
T PTZ00212 345 LGHCDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGA-STHILDEAERSLHDALC 397 (533)
T ss_pred ccCCceEEEEEECCeEEEEEEccCCCCEEEEEEECC-ChhHHHHHHHHHHHHHH
Confidence 99999998 54333 4445542 33445555555554443
No 30
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.94 E-value=3.6e-26 Score=224.34 Aligned_cols=202 Identities=18% Similarity=0.294 Sum_probs=167.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccC--ChHHHHHHhhhcCC------CchhHHHHHHHHHHhcccC--c-------
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMIS--TSEEIAQVGTISAN------GEREIGELIAKAMEKVGKE--G------- 63 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~--~~~~i~~VA~iSa~------~d~~ig~lia~Av~~vg~~--G------- 63 (276)
.||..|++||++|.+.+++.|+++++|++ +.+.+.++|++|.+ +++.+++++++|+..++.+ |
T Consensus 112 i~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~ 191 (480)
T cd03337 112 IHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDI 191 (480)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCCh
Confidence 49999999999999999999999999998 78889999998865 5578999999999999864 4
Q ss_pred --cEEEe--cCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEecccCCcHHHHHHHHHHHHHhCCCeEE
Q 023832 64 --VITIH--DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 139 (276)
Q Consensus 64 --~I~ie--~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlI 139 (276)
.|.|+ +|+++.+ +++++|+.|++++.+| +|+.+++||+||+++++++. |+|
T Consensus 192 ~~~I~i~ki~Ggs~~d-s~li~Gvvi~k~~~~~-------~m~~~~~n~kIlll~~~Le~-----------------lvi 246 (480)
T cd03337 192 KRYAKVEKIPGGEIED-SRVLDGVMLNKDVTHP-------KMRRRIENPRIVLLDCPLEY-----------------LVI 246 (480)
T ss_pred hhceEEEEecCCCHHh-cccccceEEeccCCCC-------CCCcEecCCCEEEEecCcce-----------------EEE
Confidence 26675 5888885 9999999999999887 68899999999999998875 888
Q ss_pred EecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCccccccCcccCceee-EEEE---
Q 023832 140 VAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCK-KVTI--- 215 (276)
Q Consensus 140 iae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l~~~~~~~LG~a~-~v~v--- 215 (276)
++++|+++|+++|..| +|+||+ ++++++|+|||.+|||+++++ ++++++++||+|. .++.
T Consensus 247 ~~k~I~d~al~~L~~~------~I~~v~-----~v~~~~L~rIa~~tGa~ii~~-----~~~l~~~~LG~~~~~~~~~~~ 310 (480)
T cd03337 247 TEKGVSDLAQHYLVKA------GITALR-----RVRKTDNNRIARACGATIVNR-----PEELTESDVGTGAGLFEVKKI 310 (480)
T ss_pred eCCCccHHHHHHHHHC------CcEEEE-----eCCHHHHHHHHHHHCCEEecc-----hhhCCHHHcCCcccEEEEEEe
Confidence 8889999999999999 556884 788999999999999999999 8999999999954 3331
Q ss_pred e-------------CCcEEEEcCCCCHHHHHHHHHHHHHHHH
Q 023832 216 S-------------KDDTVILDGAGDKKSIEERCEQIRSAIE 244 (276)
Q Consensus 216 ~-------------~~~T~i~~g~g~~~~i~~r~~~l~~~~~ 244 (276)
+ +.+|+++||+ +...+++.-+.+...+.
T Consensus 311 ~~~~~~~i~~~~~~~~~TIllrG~-t~~~l~e~er~l~DAl~ 351 (480)
T cd03337 311 GDEYFTFITECKDPKACTILLRGA-SKDVLNEVERNLQDAMA 351 (480)
T ss_pred CCeEEEEEEcCCCCCEEEEEEECC-CHHHHHHHHHHHHHHHH
Confidence 1 2336666663 33455555555555543
No 31
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.94 E-value=4.8e-26 Score=223.00 Aligned_cols=185 Identities=18% Similarity=0.240 Sum_probs=153.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcc-cC---ChHHHHHHhhhc-----CCCchhHHHHHHHHHHhcccC--ccEEEe-
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARM-IS---TSEEIAQVGTIS-----ANGEREIGELIAKAMEKVGKE--GVITIH- 68 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~-v~---~~~~i~~VA~iS-----a~~d~~ig~lia~Av~~vg~~--G~I~ie- 68 (276)
.||+.|++||+.|.+.+++.|++++.+ ++ +.+.+.+++.+| +++++.+++++++|+.+++++ |.+.++
T Consensus 104 i~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~~ 183 (472)
T cd03341 104 LHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSPLVAEACISVLPENIGNFNVDN 183 (472)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhhccCCcCChhH
Confidence 499999999999999999999999976 54 346677777666 246889999999999999976 644432
Q ss_pred ------cCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEec
Q 023832 69 ------DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAE 142 (276)
Q Consensus 69 ------~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae 142 (276)
+|+++++ +++++|+.|++.. ..|..+++||+|++++++++. |.||||+++
T Consensus 184 i~i~ki~Gg~~~d-s~lv~Giv~~~~~---------~~~~~~~~n~~Ili~~~~Le~--------------g~~lvi~~~ 239 (472)
T cd03341 184 IRVVKILGGSLED-SKVVRGMVFKREP---------EGSVKRVKKAKVAVFSCPFDI--------------GVNVIVAGG 239 (472)
T ss_pred eEEEEecCCCccc-ceEEeeEEEcccc---------CCCceeccCCcEEEEeccccC--------------CCeEEEECC
Confidence 7888885 8999999998642 234588999999999999987 889999999
Q ss_pred CccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCccccccCcccCceeeEEEEeC---Cc
Q 023832 143 DVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISK---DD 219 (276)
Q Consensus 143 ~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l~~~~~~~LG~a~~v~v~~---~~ 219 (276)
+|+++|+++|..+ +|+|||.|+ +.+|+|||.+|||+++++ ++++++++||+|++|++.+ +.
T Consensus 240 ~I~d~al~~l~~~------~I~av~~~~-----~~~Le~Ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~ig~~~ 303 (472)
T cd03341 240 SVGDLALHYCNKY------GIMVIKINS-----KFELRRLCRTVGATPLPR-----LGAPTPEEIGYCDSVYVEEIGDTK 303 (472)
T ss_pred CCCHHHHHHHHHC------CeEEEEeCC-----HHHHHHHHHHhCCEEecc-----cccCCHhHCCCceEEEEEEECCee
Confidence 9999999997754 678998777 677999999999999999 8889999999999998764 44
Q ss_pred EEEEcC
Q 023832 220 TVILDG 225 (276)
Q Consensus 220 T~i~~g 225 (276)
++++.|
T Consensus 304 ~~~~~~ 309 (472)
T cd03341 304 VVVFRQ 309 (472)
T ss_pred EEEEEc
Confidence 444443
No 32
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=99.94 E-value=2.4e-25 Score=216.86 Aligned_cols=220 Identities=25% Similarity=0.434 Sum_probs=184.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccCCh-HHHHHHhhhcCCCc------hhHHHHHHHHH------HhcccCccEEE
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTS-EEIAQVGTISANGE------REIGELIAKAM------EKVGKEGVITI 67 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~~~-~~i~~VA~iSa~~d------~~ig~lia~Av------~~vg~~G~I~i 67 (276)
.||..|++||+.|.+.+++.|+++|+|+++. +.+.++|.++.+++ +.+++++.+|+ ..++..+++.+
T Consensus 85 i~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~~~i~i~~i 164 (485)
T PF00118_consen 85 IHPQEIIRGLQEALKIILEYLEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDLDNIKIIKI 164 (485)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHGGGEEEEEE
T ss_pred ccccchhhhhhhhhhhhhhhhhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccccchhhhhh
Confidence 4899999999999999999999999999987 99999999998766 79999999999 33444444444
Q ss_pred ecCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEecccCCcHHH-----------------------HH
Q 023832 68 HDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTA-----------------------VV 124 (276)
Q Consensus 68 e~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~~~-----------------------i~ 124 (276)
. |+.++ ++++++|+.|+++|.+| .|+..++||+|+++++.++..+. +.
T Consensus 165 ~-g~~~~-dS~li~Giv~~~~~~~~-------~~~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~ 235 (485)
T PF00118_consen 165 P-GGSIS-DSELINGIVLDKGFSSP-------NMPKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLK 235 (485)
T ss_dssp E-SSSSG-GEEEESEEEESSSBSST-------TSBSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHH
T ss_pred c-ccccc-ccccccceeeecccccc-------ccccccccceEEeeecccccccccccccchhhHHHHHHHHhhhhhhhc
Confidence 4 44555 59999999999999998 57788899999999999988877 99
Q ss_pred HHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCccccccCc
Q 023832 125 RVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNL 204 (276)
Q Consensus 125 p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l~~~~~ 204 (276)
++++++.+.|.|++|++++|++.++++|..|++. ++ .+.++.+|++||.+|||+++++ +++++.
T Consensus 236 ~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~------~i-----~~v~~~~l~~i~~~tg~~ii~~-----~~~l~~ 299 (485)
T PF00118_consen 236 KILEKIINLGVNLIISQKSIDDEALQYLNKNGIL------VI-----RRVSKEDLERIARATGASIISS-----LDDLSD 299 (485)
T ss_dssp HHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHE------EE-----SSEHHHHHHHHHHHHTSBEBSS-----CGGSTG
T ss_pred cccceEeeeccceeeeecccccccchhhhhhhhh------cc-----ccchHHHHHhhhcccCCcEecc-----cccccc
Confidence 9999999999999999999999999999999775 45 6779999999999999999999 788888
Q ss_pred ccCceeeEE---EEeCCcEEEEcC--------------CCCHHHHHHHHHHHHHHHHh
Q 023832 205 DMLGTCKKV---TISKDDTVILDG--------------AGDKKSIEERCEQIRSAIEN 245 (276)
Q Consensus 205 ~~LG~a~~v---~v~~~~T~i~~g--------------~g~~~~i~~r~~~l~~~~~~ 245 (276)
++||+|+.+ +++.+.++++.+ +.+...++++.+.+...+..
T Consensus 300 ~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~i~dal~~ 357 (485)
T PF00118_consen 300 EDLGFCKSVEEREIGNKKYIFIEGIGCLSSKICTILLRGPTEFELEERERSIHDALKV 357 (485)
T ss_dssp GGSEEEEEEEEEEETSSEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhcccccccccccccccccccCceEEEeccccchhHHHHHHHHHHHHHH
Confidence 889999999 666666666553 13455666666666665544
No 33
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.93 E-value=2.3e-25 Score=220.46 Aligned_cols=189 Identities=23% Similarity=0.301 Sum_probs=154.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccC-----ChHHHHHHhhhc--CC----CchhHHHHHHHHHHhcccC---ccEE
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMIS-----TSEEIAQVGTIS--AN----GEREIGELIAKAMEKVGKE---GVIT 66 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~-----~~~~i~~VA~iS--a~----~d~~ig~lia~Av~~vg~~---G~I~ 66 (276)
.||..|++||++|.+.+++.|+++++|++ +.+.|.++|++| ++ +++.+++++++|+.+++.. ..|.
T Consensus 111 i~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~~~~~~~i~ 190 (517)
T cd03336 111 IHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKGSGNLDAIQ 190 (517)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhccCCcccee
Confidence 49999999999999999999999999994 247899999844 54 6789999999999998632 2455
Q ss_pred Ee--cCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEecccCC--------------cHHHH-------
Q 023832 67 IH--DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS--------------NLTAV------- 123 (276)
Q Consensus 67 ie--~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~--------------~~~~i------- 123 (276)
++ .|++++ ++.+++|+.|++++.+ .|+.+++||+|+++|++++ +++++
T Consensus 191 i~ki~G~s~~-ds~l~~G~v~~~~~~~--------~~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E 261 (517)
T cd03336 191 IIKKLGGSLK-DSYLDEGFLLDKKIGV--------NQPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAE 261 (517)
T ss_pred EEEccCCCcc-ceEEEeeEEEecccCC--------CCCCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHH
Confidence 54 577777 4777777777776532 2578899999999999775 45544
Q ss_pred ----HHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCccc
Q 023832 124 ----VRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDL 199 (276)
Q Consensus 124 ----~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l 199 (276)
...++.+.+.|.++++....|++.++++|..+++ +|||.|++ .+|+|||.+|||+++++ +
T Consensus 262 ~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I------~av~~v~~-----~~L~rIa~~tGa~ii~~-----l 325 (517)
T cd03336 262 KEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGI------MAIEHADF-----DGVERLALVTGGEIAST-----F 325 (517)
T ss_pred HHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCc------EEEecCCH-----HHHHHHHHHhCCEEecc-----c
Confidence 3347888899988888777999999999999954 59976664 45999999999999998 8
Q ss_pred cccCcccCceeeEEE
Q 023832 200 EKVNLDMLGTCKKVT 214 (276)
Q Consensus 200 ~~~~~~~LG~a~~v~ 214 (276)
+++++++||+|++|+
T Consensus 326 ~~~~~~~LG~~~~v~ 340 (517)
T cd03336 326 DHPELVKLGTCKLIE 340 (517)
T ss_pred CCCCcccccccceEE
Confidence 999999999998887
No 34
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.93 E-value=1.5e-25 Score=221.91 Aligned_cols=195 Identities=17% Similarity=0.292 Sum_probs=161.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccCC-----hHHHHHHhhhcCCCchhHHHHHHHHHHhcccCccEEEecCCccee
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMIST-----SEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYN 75 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~~-----~~~i~~VA~iSa~~d~~ig~lia~Av~~vg~~G~I~ie~g~~~~~ 75 (276)
.||+.|++||++|.+.+++.|+++++|+++ .++|.++|++|.+ + +++...++++.+++.++++.++++...+
T Consensus 112 ihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~-s-ki~~~~~~~~s~l~~~av~~i~~~~~~~- 188 (519)
T TIGR02341 112 IHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLS-S-KILSQHKDHFAQLAVDAVLRLKGSGNLD- 188 (519)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhh-h-hhhhhHHHHHHHHHHHHHHHhccCCChh-
Confidence 499999999999999999999999999963 4789999999986 4 5777778888888877777776655554
Q ss_pred eEEEE--EeEEEeeeccCcccccccc---cceeeecCceEEEecccCCc--------------HHH-----------HHH
Q 023832 76 ELEVV--EGMKLDRGYISPYFITNQK---NQKCELEDPLILVHEKKISN--------------LTA-----------VVR 125 (276)
Q Consensus 76 ~l~v~--eG~~fd~gy~spyfvt~~~---~~~~~l~~p~Ill~d~~i~~--------------~~~-----------i~p 125 (276)
.+++. .|..|+.+|++|||+.+.+ .|+.+++||+|+++|++++. .++ +..
T Consensus 189 ~i~i~k~~G~s~~~s~l~~G~v~~~~~~~~~~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~ 268 (519)
T TIGR02341 189 AIQIIKKLGGSLNDSYLDEGFLLEKKIGVNQPKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKE 268 (519)
T ss_pred heEEEEccCCCcccceEEeeEEEeccCCCCCceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHH
Confidence 37777 4888888888888887765 68899999999999998864 212 222
Q ss_pred HHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCccccccCcc
Q 023832 126 VLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLD 205 (276)
Q Consensus 126 ~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l~~~~~~ 205 (276)
.++.+.+.|..+++....|++.++++|..+++ +||+.|+ +.+|+|||.+|||+++++ +++++++
T Consensus 269 ~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I------~~v~~~~-----~~~l~~ia~~tGa~ii~~-----~~~~~~~ 332 (519)
T TIGR02341 269 KVEKILKHNINCFINRQLIYNYPEQLFADAGV------MAIEHAD-----FEGIERLALVTGGEIVST-----FDHPELV 332 (519)
T ss_pred HHHHHHHcCCcEEEECCcCCHHHHHHHHHCCc------EEEecCC-----HHHHHHHHHHhCCEEecc-----cccCCcc
Confidence 37788888977777777999999999999855 5997666 558999999999999998 8999999
Q ss_pred cCceeeEEE
Q 023832 206 MLGTCKKVT 214 (276)
Q Consensus 206 ~LG~a~~v~ 214 (276)
+||+|++|+
T Consensus 333 ~lG~~~~v~ 341 (519)
T TIGR02341 333 KLGSCDLIE 341 (519)
T ss_pred ccccCceEE
Confidence 999999887
No 35
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.91 E-value=1.5e-23 Score=184.27 Aligned_cols=143 Identities=32% Similarity=0.504 Sum_probs=126.6
Q ss_pred HHHHHHhhhcCC-----CchhHHHHHHHHHHhccc------CccEEEe--cCCcceeeEEEEEeEEEeeeccCccccccc
Q 023832 32 EEIAQVGTISAN-----GEREIGELIAKAMEKVGK------EGVITIH--DGKTLYNELEVVEGMKLDRGYISPYFITNQ 98 (276)
Q Consensus 32 ~~i~~VA~iSa~-----~d~~ig~lia~Av~~vg~------~G~I~ie--~g~~~~~~l~v~eG~~fd~gy~spyfvt~~ 98 (276)
+.+.++|++|.+ +++.+++++++|+..+++ .+.|.|+ .|+++. ++++++|+.|+++|.+|+
T Consensus 2 ~~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~-ds~li~Gv~~~~~~~~~~----- 75 (209)
T cd03333 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLE-DSELVVGVVFDKGYASPY----- 75 (209)
T ss_pred hHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChh-hceeEeeEEEeccccCCC-----
Confidence 568899999877 789999999999999998 5789886 677777 599999999999999997
Q ss_pred ccceeeecCceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEec-CccchHHHHHHHhcccccceeeEEeCCCCccCccc
Q 023832 99 KNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAE-DVESEALATLILNKLRAGIKVCAIKAPGFGENRKA 177 (276)
Q Consensus 99 ~~~~~~l~~p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae-~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~ 177 (276)
|+.+++||+||+++++++. ||+++ +|+++|+++|..++ ++||+ +.++.
T Consensus 76 --m~~~~~n~~Ill~~~~le~------------------vii~~~~I~~~al~~l~~~~------I~~v~-----~~~~~ 124 (209)
T cd03333 76 --MPKRLENAKILLLDCPLEY------------------VVIAEKGIDDLALHYLAKAG------IMAVR-----RVKKE 124 (209)
T ss_pred --CCeEcCCCcEEEEeCCeeE------------------EEEecCcccHHHHHHHHHCC------CEEEE-----eCCHH
Confidence 4789999999999999887 66677 59999999999974 45884 68899
Q ss_pred hHHhHHhHhCCeEEecCCCccccccCcccCceeeEEEEe
Q 023832 178 NMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS 216 (276)
Q Consensus 178 ~LedIA~~TGg~vi~~~~g~~l~~~~~~~LG~a~~v~v~ 216 (276)
+|+|||.+|||+++++ ++++++++||+|+++++.
T Consensus 125 ~l~~ia~~tga~ii~~-----~~~~~~~~lG~~~~v~~~ 158 (209)
T cd03333 125 DLERIARATGATIVSS-----LEDLTPEDLGTAELVEET 158 (209)
T ss_pred HHHHHHHHHCCEEecc-----cccCChhhceeeeEEEEE
Confidence 9999999999999999 889999999999999866
No 36
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2e-20 Score=176.83 Aligned_cols=220 Identities=19% Similarity=0.274 Sum_probs=184.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccC--ChHHHHHHhhhcC------CCchhHHHHHHHHHHhcccC-c-------c
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMIS--TSEEIAQVGTISA------NGEREIGELIAKAMEKVGKE-G-------V 64 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~--~~~~i~~VA~iSa------~~d~~ig~lia~Av~~vg~~-G-------~ 64 (276)
.||+.+++++.+|++..+..+.+++.|++ +...+..+...|- .++..++.+..+|+++||.+ | +
T Consensus 115 ~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y 194 (527)
T KOG0364|consen 115 IHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRY 194 (527)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhh
Confidence 49999999999999999999999999887 5577777777663 35678999999999999976 4 3
Q ss_pred EEEe--cCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEecccCCcH----------------------
Q 023832 65 ITIH--DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNL---------------------- 120 (276)
Q Consensus 65 I~ie--~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~---------------------- 120 (276)
.++| +|+-++ ++++++|..+++...+| +|+..++||+|+++|+++..-
T Consensus 195 ~kveKvpgg~l~-~s~vl~Gv~~nkdv~Hp-------kmrr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqi 266 (527)
T KOG0364|consen 195 AKVEKVPGGLLE-DSCVLKGVMINKDVTHP-------KMRRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQI 266 (527)
T ss_pred ccccccCccccc-ccceecceeeccccCcH-------HHHHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHh
Confidence 3454 788888 59999999999999999 688899999999999976221
Q ss_pred --HHHHHHHHHHHHhCCCeEEEec-CccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCc
Q 023832 121 --TAVVRVLELALKRQRPLLIVAE-DVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGM 197 (276)
Q Consensus 121 --~~i~p~le~i~~~~~pLlIiae-~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~ 197 (276)
+++..+++.+.... |-|+|+| ++++.|.++|..+++. +.++.||.+..+||.+||++++++
T Consensus 267 eee~v~~mc~~Ii~v~-pDlVitekG~sdla~hyl~k~~iT-----------~~rr~rKtDn~ria~acga~iv~r---- 330 (527)
T KOG0364|consen 267 EEEQVQAMCEVIIAVK-PDLVITEKGVSDLAQHYLLKANIT-----------AIRRLRKTDNNRIARACGARIVNR---- 330 (527)
T ss_pred hHHHHHHHHHHHHeec-ccEEEeccchhHHHHHHHHhcCch-----------hhhhhhccccchhhhhcCceeccC----
Confidence 34566788888777 8888888 9999999999999554 458999999999999999999999
Q ss_pred cccccCcccCce-eeEEEEe----------------CCcEEEEcCCCCHHHHHHHHHHHHHHHHhc
Q 023832 198 DLEKVNLDMLGT-CKKVTIS----------------KDDTVILDGAGDKKSIEERCEQIRSAIENS 246 (276)
Q Consensus 198 ~l~~~~~~~LG~-a~~v~v~----------------~~~T~i~~g~g~~~~i~~r~~~l~~~~~~~ 246 (276)
.+++...+.|+ |+.+++. |.||+++|| ++++-+..=.+.|+....-+
T Consensus 331 -pedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pkaCtillrg-~skdil~e~ernlqda~~va 394 (527)
T KOG0364|consen 331 -PEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPKACTILLRG-PSKDILNEVERNLQDAMGVA 394 (527)
T ss_pred -hhhCchhccCcccceeeeeccCchhhhhhhhcCCCcceEEEecc-CchhHHHHHHHHhhhHHHHH
Confidence 99999999994 8898866 789999998 56677777777777665443
No 37
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.9e-20 Score=172.69 Aligned_cols=190 Identities=18% Similarity=0.205 Sum_probs=161.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccC--ChHHHHHHhhhcCC------CchhHHHHHHHHHHhcccC--------cc
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMIS--TSEEIAQVGTISAN------GEREIGELIAKAMEKVGKE--------GV 64 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~--~~~~i~~VA~iSa~------~d~~ig~lia~Av~~vg~~--------G~ 64 (276)
.||+.|...++.|....++.|.+||.|++ +++.|.+-|++|.| .+..+++|+.+|+.++-.. ..
T Consensus 122 iHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKvvSq~s~llapmAVdAV~kv~dp~~~~nvdlkd 201 (534)
T KOG0358|consen 122 IHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLAPMAVDAVLKVIDPENATNVDLKD 201 (534)
T ss_pred CCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccchHHHHHHHhccCcccccccchhh
Confidence 39999999999999999999999999987 67889999999964 5667899999999988652 25
Q ss_pred EEE--ecCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEecccCCcH----------------------
Q 023832 65 ITI--HDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNL---------------------- 120 (276)
Q Consensus 65 I~i--e~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~---------------------- 120 (276)
|+| +.|++++ +.++++|+.|++...-. ..+...++++|-+..+.||.+
T Consensus 202 IkivkklGgtvd-Dte~i~glvl~~~~~~~-------~gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilke 273 (534)
T KOG0358|consen 202 IKIVKKLGGTVD-DTELIKGLVLTQKASKS-------AGPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKE 273 (534)
T ss_pred hhhHHhhCCccc-hhhhhcceEEeeecccC-------CCcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHH
Confidence 666 4799998 59999999998765422 156688999999999988766
Q ss_pred --HHHHHHHHHHHHhCCCeEEEecCc-----cchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEec
Q 023832 121 --TAVVRVLELALKRQRPLLIVAEDV-----ESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITE 193 (276)
Q Consensus 121 --~~i~p~le~i~~~~~pLlIiae~i-----~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~ 193 (276)
++|+.+|++++++|+++|+|.+.| +|.|||+|.+-+ +.+| .|..++++|+|+..+|++++++
T Consensus 274 ER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klk------imvi-----kdieRediefick~l~c~Pia~ 342 (534)
T KOG0358|consen 274 ERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLK------IMVI-----KDIEREDIEFICKTLGCKPIAD 342 (534)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCc------EEEE-----ccccHhhHHHHHhhcCCeecch
Confidence 459999999999999999998865 777788876654 4477 5999999999999999999999
Q ss_pred CCCccccccCcccCceeeEEE
Q 023832 194 ELGMDLEKVNLDMLGTCKKVT 214 (276)
Q Consensus 194 ~~g~~l~~~~~~~LG~a~~v~ 214 (276)
+|.++++.||+|+.++
T Consensus 343 -----id~f~~d~Lg~adlve 358 (534)
T KOG0358|consen 343 -----IDHFTADKLGSADLVE 358 (534)
T ss_pred -----hhhcChhhcCcchhhh
Confidence 9999999999988776
No 38
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=9.5e-20 Score=170.36 Aligned_cols=207 Identities=16% Similarity=0.260 Sum_probs=174.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccCC------hHHHHHHhhhcC------CCchhHHHHHHHHHHhcccC---ccE
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMIST------SEEIAQVGTISA------NGEREIGELIAKAMEKVGKE---GVI 65 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~~------~~~i~~VA~iSa------~~d~~ig~lia~Av~~vg~~---G~I 65 (276)
.||.-|+++|++|...+++.|++++..++. ++-|...|.++. ++...+++|++||+..+..+ ..|
T Consensus 116 v~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mI 195 (543)
T KOG0361|consen 116 VHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMI 195 (543)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhc
Confidence 389999999999999999999999999882 366777887763 35678999999999998844 467
Q ss_pred EEe--cCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEecccC-------------CcHHH--------
Q 023832 66 TIH--DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKI-------------SNLTA-------- 122 (276)
Q Consensus 66 ~ie--~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i-------------~~~~~-------- 122 (276)
-|+ .|+.+++ +.++.|+.|.+-|....| +.++..|.||+||+++-++ +++++
T Consensus 196 GIKKV~GG~~~d-S~lv~GVAFkKtFsYAGf----EqqPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAE 270 (543)
T KOG0361|consen 196 GIKKVPGGAMED-SLLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAE 270 (543)
T ss_pred ceeecCCCccch-hhhccceeeeehccccch----hhCccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHH
Confidence 775 8999995 889999999999988777 4778899999999999854 33333
Q ss_pred ---HHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCccc
Q 023832 123 ---VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDL 199 (276)
Q Consensus 123 ---i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l 199 (276)
|...|+++..+|.++++-.-.|.|.|.+||....+ .+-|+..+++|.+...++||.+.+. .
T Consensus 271 W~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdi-----------FCAGRV~~eDl~Rv~~acGGsi~tt-----~ 334 (543)
T KOG0361|consen 271 WNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDI-----------FCAGRVPEEDLNRVMQACGGSIQTT-----V 334 (543)
T ss_pred HHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCc-----------eecCcCCHHHHHHHHHhcCcchhhh-----h
Confidence 55569999999977777666999999999999955 4458999999999999999999998 7
Q ss_pred cccCcccCceeeEEEEe----------------CCcEEEEcCCCC
Q 023832 200 EKVNLDMLGTCKKVTIS----------------KDDTVILDGAGD 228 (276)
Q Consensus 200 ~~~~~~~LG~a~~v~v~----------------~~~T~i~~g~g~ 228 (276)
.++.++.||+|..++-. +.+|.|+||+++
T Consensus 335 ~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliLRGgae 379 (543)
T KOG0361|consen 335 SDIKEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLILRGGAE 379 (543)
T ss_pred hhcchhhcchhhhHHHHhhcchhhhhhcCCCccceeEEEEeccHH
Confidence 88999999999998822 789999999664
No 39
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=6.8e-18 Score=161.03 Aligned_cols=195 Identities=14% Similarity=0.232 Sum_probs=159.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHh-cCcccC--ChHHHHHHhhhcC------CCchhHHHHHHHHHHhccc---Cc-----
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKS-RARMIS--TSEEIAQVGTISA------NGEREIGELIAKAMEKVGK---EG----- 63 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~-~s~~v~--~~~~i~~VA~iSa------~~d~~ig~lia~Av~~vg~---~G----- 63 (276)
.||+.++.||+.|+..+++++++ ++.|++ +++-+.++|.+|. +..+.+++++++|+..+-. +|
T Consensus 115 ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~yp 194 (545)
T KOG0360|consen 115 IHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYP 194 (545)
T ss_pred CcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceecc
Confidence 38999999999999999999987 788988 5688999999883 3568899999999996532 23
Q ss_pred --cEEE-e-cCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEecccC-------------CcHHHHHHH
Q 023832 64 --VITI-H-DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKI-------------SNLTAVVRV 126 (276)
Q Consensus 64 --~I~i-e-~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i-------------~~~~~i~p~ 126 (276)
.+.| + .|++.- |+.++.|+.++....|. .|+..+.||+|+++|+.+ .+++.+..+
T Consensus 195 i~~vnILkahG~s~~-eS~l~~GyaLnc~~asq-------~m~~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~i 266 (545)
T KOG0360|consen 195 INSVNILKAHGKSQI-ESMLLPGYALNCSVASQ-------MMPLRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQI 266 (545)
T ss_pred ccceeEEecCCccch-hheeecceeeeccHhhh-------ccccccccceeeeEecccccccccccceEEEcChHHHHHH
Confidence 4455 3 677766 69999999999998886 478888899999999954 344433333
Q ss_pred -----------HHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCC
Q 023832 127 -----------LELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEEL 195 (276)
Q Consensus 127 -----------le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~ 195 (276)
++++..+|.++++.+.+|+|.++++|+..+. .+.++..|++|+.||.+||++++++-.
T Consensus 267 r~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veaga-----------mAVrR~~k~dlk~iakatGat~~sSla 335 (545)
T KOG0360|consen 267 RQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGA-----------MAVRRCKKEDLKRIAKATGATLLSSLA 335 (545)
T ss_pred HHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcch-----------hhhHHHHHHHHHHHHHhhCCeeeehhh
Confidence 7788999999999999999999999999944 444899999999999999999999944
Q ss_pred Ccc-ccccCcccCceeeEEE
Q 023832 196 GMD-LEKVNLDMLGTCKKVT 214 (276)
Q Consensus 196 g~~-l~~~~~~~LG~a~~v~ 214 (276)
.++ -|.+.+..||+|++|.
T Consensus 336 ~l~geetf~~~~lG~a~evv 355 (545)
T KOG0360|consen 336 NLEGEETFEPASLGSADEVV 355 (545)
T ss_pred ccccccccChhhccchhHHH
Confidence 332 2478889999999987
No 40
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.74 E-value=6e-17 Score=147.77 Aligned_cols=175 Identities=17% Similarity=0.288 Sum_probs=136.8
Q ss_pred CchhHHHHHHHHHHhcccC---c-------cEEEe--cCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEE
Q 023832 44 GEREIGELIAKAMEKVGKE---G-------VITIH--DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLIL 111 (276)
Q Consensus 44 ~d~~ig~lia~Av~~vg~~---G-------~I~ie--~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Il 111 (276)
+.+.+++++++|+..+-.+ + .|.|+ .|++++ ++++++||.|++...++ +|+..++||+|+
T Consensus 19 ~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~-dS~li~Gvvi~k~~~~~-------~m~~~i~n~kIl 90 (261)
T cd03334 19 WLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPS-DSEVVDGVVFTKNVAHK-------RMPSKIKNPRIL 90 (261)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHH-HcEEEeeEEEeCCCCCc-------cCCcccCCCcEE
Confidence 3577999999999988522 1 47775 799998 59999999999998876 588899999999
Q ss_pred EecccCCcH-----------------HHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccC
Q 023832 112 VHEKKISNL-----------------TAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGEN 174 (276)
Q Consensus 112 l~d~~i~~~-----------------~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~ 174 (276)
++++.++.. +.+...++++...|..++++.++|++.|+++|..+++. +| .+.
T Consensus 91 ll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~------~v-----~~v 159 (261)
T cd03334 91 LLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGIT------LV-----LNV 159 (261)
T ss_pred EEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCE------EE-----Eec
Confidence 999987442 23666799999999777777779999999999999664 66 688
Q ss_pred ccchHHhHHhHhCCeEEecCCCccc-cccCcccCceeeEEEEe---------------------CCcEEEEcCCCCHHHH
Q 023832 175 RKANMQDLAVLTGGDLITEELGMDL-EKVNLDMLGTCKKVTIS---------------------KDDTVILDGAGDKKSI 232 (276)
Q Consensus 175 rk~~LedIA~~TGg~vi~~~~g~~l-~~~~~~~LG~a~~v~v~---------------------~~~T~i~~g~g~~~~i 232 (276)
.+.+|++||.+|||+++++ + ++++++.||+|++|++. +..|+++||+ +...+
T Consensus 160 ~~~dl~rIa~~tGa~ii~~-----i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~~~TIlLRG~-t~~~l 233 (261)
T cd03334 160 KPSVLERISRCTGADIISS-----MDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKELGCTILLRGG-DLEEL 233 (261)
T ss_pred CHHHHHHHHHHhCCEEecC-----hhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCCceeEEEEECC-CHHHH
Confidence 8999999999999999998 4 36788899999877742 2347888874 33444
Q ss_pred HHHHHHHHHHH
Q 023832 233 EERCEQIRSAI 243 (276)
Q Consensus 233 ~~r~~~l~~~~ 243 (276)
++--+-+...+
T Consensus 234 de~eR~i~Dal 244 (261)
T cd03334 234 KKVKRVVEFMV 244 (261)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 41
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4e-17 Score=152.11 Aligned_cols=201 Identities=21% Similarity=0.292 Sum_probs=165.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCcccCC-----hHHHHHHhhhcC------CCchhHHHHHHHHHHhcccCc---cEEE
Q 023832 2 NAMDLRRGITMAVDAVVTNLKSRARMIST-----SEEIAQVGTISA------NGEREIGELIAKAMEKVGKEG---VITI 67 (276)
Q Consensus 2 ~P~~i~rGi~~A~~~v~~~L~~~s~~v~~-----~~~i~~VA~iSa------~~d~~ig~lia~Av~~vg~~G---~I~i 67 (276)
||+.|++||+.|.+.+.+.|.+.|+.-++ +++|.++|++.. .+.++|++|+.+|+.++.-.+ .|.|
T Consensus 117 HPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLkGs~nL~~IqI 196 (527)
T KOG0363|consen 117 HPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLKGSTNLEAIQI 196 (527)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCCccceee
Confidence 99999999999999999999988876442 489999998873 356889999999999875443 5666
Q ss_pred --ecCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEecccCCcH-------------------------
Q 023832 68 --HDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNL------------------------- 120 (276)
Q Consensus 68 --e~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~------------------------- 120 (276)
..|++++| +.+-||+-+|+-+-- .++..++||+||+.+..+.+-
T Consensus 197 IK~~Gg~l~d-SfLDeGFlL~K~igv--------~qpkriena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEk 267 (527)
T KOG0363|consen 197 IKKLGGKLED-SFLDEGFLLDKKIGV--------NQPKRIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEK 267 (527)
T ss_pred ehhcCCcccc-ccccccceeccccCC--------CCcccccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHH
Confidence 48989995 889999999875532 356689999999998855331
Q ss_pred HHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCcccc
Q 023832 121 TAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE 200 (276)
Q Consensus 121 ~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l~ 200 (276)
+.+...++++.++|.+++|-..=|.+.+.++|...++. |+ -+...+-+|++|..|||.++|. ++
T Consensus 268 eKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~------aI-----EHADFdGiERLalvtGGeI~ST-----Fd 331 (527)
T KOG0363|consen 268 EKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIM------AI-----EHADFDGIERLALVTGGEIVST-----FD 331 (527)
T ss_pred HHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcc------ee-----ecccchhHHHHhhcccceeeec-----cC
Confidence 23555699999999999998889999999999988665 66 6777889999999999999999 99
Q ss_pred ccCcccCceeeEEE---E-------------eCCcEEEEcCCC
Q 023832 201 KVNLDMLGTCKKVT---I-------------SKDDTVILDGAG 227 (276)
Q Consensus 201 ~~~~~~LG~a~~v~---v-------------~~~~T~i~~g~g 227 (276)
+++...||+|+.++ + .+.||++++|+.
T Consensus 332 ~p~~~klG~C~~IeeimiGed~li~FSGv~~GeActIVlrGat 374 (527)
T KOG0363|consen 332 NPELVKLGECDLIEEIMIGEDKLIKFSGVKLGEACTIVLRGAT 374 (527)
T ss_pred CcchhccccchhhHHHhcCccceeeecccccccceEEEEeccc
Confidence 99999999999876 2 268899999854
No 42
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.6e-13 Score=130.29 Aligned_cols=203 Identities=17% Similarity=0.333 Sum_probs=157.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccCChHHHHHHhhhcCC--Cc----hhHHHHHHHHHHhcc-cCccEEE------
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISAN--GE----REIGELIAKAMEKVG-KEGVITI------ 67 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~~~~~i~~VA~iSa~--~d----~~ig~lia~Av~~vg-~~G~I~i------ 67 (276)
.||--|..|++.|...++++|++.+++++ ++.|.+||.+|.+ -+ +.+.+++.+|+..+- +++.|-+
T Consensus 113 lhprii~~gfe~a~~~~l~~L~k~~~~~~-~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~~~~~idl~mveim 191 (520)
T KOG0359|consen 113 LHPRIITEGFEAAKNKALEFLEKVSREVD-RETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRRQEEPIDLFMVEIM 191 (520)
T ss_pred CCcchhhhHHHHHHHHHHhhhhccccchh-HHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeeccCCCCcchhHHHhh
Confidence 48999999999999999999998888885 7889999999954 22 346777888888766 3443322
Q ss_pred e-cCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEecccCCc-------------HHH-----------
Q 023832 68 H-DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISN-------------LTA----------- 122 (276)
Q Consensus 68 e-~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~-------------~~~----------- 122 (276)
+ .-++. .+..+++|..+|+|-.|| .|+..++|+|||+++..+.. .++
T Consensus 192 ~mq~~s~-~dT~~v~glvLdhg~rHp-------dmp~~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~F 263 (520)
T KOG0359|consen 192 EMQHKSL-HDTSLVQGLVLDHGARHP-------DMPRRVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKF 263 (520)
T ss_pred hhccCch-hhhHHhhhhhccCCCCCc-------ccccchhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHH
Confidence 2 12233 357899999999999999 58899999999999985422 111
Q ss_pred HHHHHHHHHHhC---CCeEEEec-CccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCcc
Q 023832 123 VVRVLELALKRQ---RPLLIVAE-DVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMD 198 (276)
Q Consensus 123 i~p~le~i~~~~---~pLlIiae-~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~ 198 (276)
+..-+.++.+.+ +-+++|.+ +|++.-|..|..+++- |. ++..+..+|++..+|||..+++
T Consensus 264 i~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIl------aL-----RRAKRRNmERL~lacGG~a~ns----- 327 (520)
T KOG0359|consen 264 IDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGIL------AL-----RRAKRRNMERLVLACGGEAVNS----- 327 (520)
T ss_pred HHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchH------HH-----HHHhhhhHHHHHHhhccceecc-----
Confidence 333456666555 34677766 9999999999999653 44 6777888999999999999999
Q ss_pred ccccCcccCceeeEEEEe----------------CCcEEEEcCCCC
Q 023832 199 LEKVNLDMLGTCKKVTIS----------------KDDTVILDGAGD 228 (276)
Q Consensus 199 l~~~~~~~LG~a~~v~v~----------------~~~T~i~~g~g~ 228 (276)
+++++++.||.|+.|-.- +.+|++++|+..
T Consensus 328 vddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p~S~TiLikgpnk 373 (520)
T KOG0359|consen 328 VDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNPSSVTILIKGPNK 373 (520)
T ss_pred cccCChhhccccceeEEeeccceeeEeeecCCCCcceEEEEeCCcc
Confidence 999999999999998632 778889998664
No 43
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.3e-12 Score=119.25 Aligned_cols=101 Identities=25% Similarity=0.345 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCcccccc
Q 023832 123 VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKV 202 (276)
Q Consensus 123 i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l~~~ 202 (276)
+..++++++++|..|.|+.++++|||.|+|..|++ |..+|..--++|-||++|||+++.+ ++++
T Consensus 144 f~emi~~vK~~ga~l~icqwgfddeanhll~~n~l-----------pavrwVGGpEiEliAiaT~grIVpr-----F~eL 207 (400)
T KOG0357|consen 144 FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNL-----------PAVRWVGGPEIELIAIATGGRIVPR-----FSEL 207 (400)
T ss_pred HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCC-----------CceeecCCcceEEEEeecCCeeecc-----Hhhh
Confidence 56678899999999999999999999999999966 5557889999999999999999999 9999
Q ss_pred CcccCceeeEEE-Ee-----------------CCcEEEEcCCCCHHHHHHHHHHHH
Q 023832 203 NLDMLGTCKKVT-IS-----------------KDDTVILDGAGDKKSIEERCEQIR 240 (276)
Q Consensus 203 ~~~~LG~a~~v~-v~-----------------~~~T~i~~g~g~~~~i~~r~~~l~ 240 (276)
+.++||+|+.|. ++ |.-|+++|| |++=-|++-.+.|.
T Consensus 208 ~~~kLG~aglVrE~sfgttkdkmlviEqc~nskaVTifvRg-~Nkmii~Eakrslh 262 (400)
T KOG0357|consen 208 TAEKLGFAGLVREISFGTTKDKMLVIEQCKNSKAVTIFVRG-GNKMIIEEAKRSLH 262 (400)
T ss_pred CHhhccccceEEEEecccccceEEEEEecCCCceEEEEEec-CcceeHHHHHHHhh
Confidence 999999999887 22 677888998 44444554444443
No 44
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.6e-10 Score=110.10 Aligned_cols=202 Identities=19% Similarity=0.209 Sum_probs=150.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcc-cC---ChHHHHHHhhhcC--CCchhHHHHHHHHHHhcccCc-----cEEEe-
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARM-IS---TSEEIAQVGTISA--NGEREIGELIAKAMEKVGKEG-----VITIH- 68 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~-v~---~~~~i~~VA~iSa--~~d~~ig~lia~Av~~vg~~G-----~I~ie- 68 (276)
++|.+|+.||+.|...+.+.|.++... +. +++.....+..|- .+++.+.+++++|--.+.+.+ +|.|-
T Consensus 122 l~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ed~l~~lVa~ac~si~p~~~FnvdnIrVcK 201 (537)
T KOG0362|consen 122 LTPAEISEGYETATKEALEILPELVVQSIGDLEDKEWALRSVIMSKQYGNEDFLTKLVAKACVSILPLMSFNVDNIRVCK 201 (537)
T ss_pred CCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcccccccccceEEEE
Confidence 479999999999999999999997543 22 4443333332221 357889999999999888774 45552
Q ss_pred -cCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEeccc-------------CCcHHHHH----------
Q 023832 69 -DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTAVV---------- 124 (276)
Q Consensus 69 -~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~-------------i~~~~~i~---------- 124 (276)
.|+++++ +.++.||.|++.-. .....-.+++|.+..|+ |+++++++
T Consensus 202 i~Gg~l~~-S~Vv~GmVfkr~~e---------G~v~~ak~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~ll 271 (537)
T KOG0362|consen 202 ILGGGLED-SCVVCGMVFKRDPE---------GEVKSAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALL 271 (537)
T ss_pred EecCCccc-ceeeEEEEeccccC---------CcccccccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHH
Confidence 7889985 99999999987433 22234466788888887 56665543
Q ss_pred -HHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCccccccC
Q 023832 125 -RVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVN 203 (276)
Q Consensus 125 -p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l~~~~ 203 (276)
..++.+...|-.+++....|++.+|++|-..++ .++++|. |-+|.+++...||++.++ +....
T Consensus 272 e~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~I------mVlqi~S-----k~eLrrlcrtvGA~~l~r-----l~~P~ 335 (537)
T KOG0362|consen 272 EEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKI------MVLQINS-----KFDLRRLCRTVGATALPR-----LFPPA 335 (537)
T ss_pred HHHHHHHHhcCCeEEEecCccchhhhhhhccccE------EEEEecc-----HhhHHHHHHHcCCccchh-----ccCCC
Confidence 447777777866666666999999999966544 5887665 889999999999999999 88888
Q ss_pred cccCceeeEEEEe-----------------CCcEEEEcCCCC
Q 023832 204 LDMLGTCKKVTIS-----------------KDDTVILDGAGD 228 (276)
Q Consensus 204 ~~~LG~a~~v~v~-----------------~~~T~i~~g~g~ 228 (276)
++.||.|.+|... +-.|+++||+-+
T Consensus 336 ~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~ 377 (537)
T KOG0362|consen 336 PEELGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQ 377 (537)
T ss_pred CccccccceeeeeecCCceEEEEeeccCCCceeEEEEcccch
Confidence 9999999977633 335899998544
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=98.27 E-value=6.8e-06 Score=88.36 Aligned_cols=160 Identities=18% Similarity=0.297 Sum_probs=118.5
Q ss_pred hHHHHHHHHHHhcccC----------ccEEEe--cCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEec
Q 023832 47 EIGELIAKAMEKVGKE----------GVITIH--DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHE 114 (276)
Q Consensus 47 ~ig~lia~Av~~vg~~----------G~I~ie--~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d 114 (276)
.+-.+.-+|...+-++ +.+.|+ .|+... +++++.|+.|-|-..+- +|..++++|+||++.
T Consensus 336 ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~-dS~vi~Gvv~sKn~~~k-------~M~~~~e~prilll~ 407 (1598)
T KOG0230|consen 336 IITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRV-DSEVIKGVVCSKNVAHK-------RMATKYENPRILLLG 407 (1598)
T ss_pred HHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcc-cceeeeEEEeecchhhh-------hhhhhccCCceEEEe
Confidence 3555566666654433 477775 666655 69999999998866554 688899999999998
Q ss_pred cc---------CCcHHH--------HHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccc
Q 023832 115 KK---------ISNLTA--------VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKA 177 (276)
Q Consensus 115 ~~---------i~~~~~--------i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~ 177 (276)
+. +++++. +-+.+..+...+..+|.+-..|++.|..+|....+. -|. +..+.
T Consensus 408 g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~---lvl--------nvK~s 476 (1598)
T KOG0230|consen 408 GPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGIS---LVL--------NVKRS 476 (1598)
T ss_pred cchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeE---EEE--------eccHH
Confidence 84 334333 344455655555455666669999999999887664 222 55688
Q ss_pred hHHhHHhHhCCeEEecCCCccccccCcccCceeeEEEEe---------------------CCcEEEEcCCCCHH
Q 023832 178 NMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS---------------------KDDTVILDGAGDKK 230 (276)
Q Consensus 178 ~LedIA~~TGg~vi~~~~g~~l~~~~~~~LG~a~~v~v~---------------------~~~T~i~~g~g~~~ 230 (276)
.|++||..||+.++.+ ++.++.-.||.|+.+++. ..+|++++|...++
T Consensus 477 ~leRIsR~tga~I~~s-----iDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~lG~TiLLrG~~~~e 545 (1598)
T KOG0230|consen 477 LLERISRCTGADIVPS-----VDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPLGCTILLRGDSLEE 545 (1598)
T ss_pred HHHHHHHHhcCceecc-----hhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCCCceEEecCCCHHH
Confidence 9999999999999988 888999999999999854 67899999865443
No 46
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00012 Score=73.33 Aligned_cols=107 Identities=19% Similarity=0.247 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhCCC-eEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchH-HhHHhHhCCeEEecCCCcccc
Q 023832 123 VVRVLELALKRQRP-LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANM-QDLAVLTGGDLITEELGMDLE 200 (276)
Q Consensus 123 i~p~le~i~~~~~p-LlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~L-edIA~~TGg~vi~~~~g~~l~ 200 (276)
+..+++.+.+.|.+ +++.+.+|+|.++++|..+.+ ..+|+..++++ ++|+.+|||+.++. ++
T Consensus 259 l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~I-----------lt~~~v~~~dl~~~l~~~~ga~~v~~-----~~ 322 (524)
T COG0459 259 LATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAI-----------LTGRRVKKEDLGERLAKLGGAKIVSV-----LK 322 (524)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcc-----------eecceecchhhHHHHHHccCceEEee-----cc
Confidence 44456777788999 667777999999999999944 44578888999 79999999999999 89
Q ss_pred ccCcccCce--eeEEEEe------------------CCcEEEEcCCCCHHHHHHHHHHHHHHHHhc
Q 023832 201 KVNLDMLGT--CKKVTIS------------------KDDTVILDGAGDKKSIEERCEQIRSAIENS 246 (276)
Q Consensus 201 ~~~~~~LG~--a~~v~v~------------------~~~T~i~~g~g~~~~i~~r~~~l~~~~~~~ 246 (276)
+.++..+|. |.+++.+ +.+|++++|+. .-.++++-+.+...+...
T Consensus 323 d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgat-e~~ldE~er~i~DAL~~~ 387 (524)
T COG0459 323 DLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGAT-EVELDEKERRIEDALNVV 387 (524)
T ss_pred cCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCcc-HhHHHHHHHHHHHHHHHH
Confidence 999999999 9998854 24777777754 455677777777777554
No 47
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=94.25 E-value=0.009 Score=59.77 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=83.1
Q ss_pred HhCCCeEEEecCccc-----hHHHHHHHhcccccc----eeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCcccccc
Q 023832 132 KRQRPLLIVAEDVES-----EALATLILNKLRAGI----KVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKV 202 (276)
Q Consensus 132 ~~~~pLlIiae~i~~-----~aL~~Lv~n~~~g~~----~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~l~~~ 202 (276)
+...|+.|+++++++ +++..++.|++++.+ +||+++.| |++.+.++|+|.+++|+.++..++++.-..-.
T Consensus 245 ~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~t 323 (522)
T TIGR02345 245 AEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLP-IGDLATQYFADHNIFCAGRVSDEDLKRVVKAC 323 (522)
T ss_pred ccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCC-ccHHHHHHHHHCCcEEEecCCHHHHHHHHHHh
Confidence 344689999999999 999999999999844 99999999 99999999999999999988777532211111
Q ss_pred CcccCceeeEEEEeCCcEEEEcCCCCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCC----eEEEEeCccc
Q 023832 203 NLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGG----VAVLKVCCGF 275 (276)
Q Consensus 203 ~~~~LG~a~~v~v~~~~T~i~~g~g~~~~i~~r~~~l~~~~~~~~s~~~~~~L~eRla~L~gg----vavi~vGg~~ 275 (276)
....+.+...+ +.+ .+-.+..=++++++.+|+.+|+|+ ++.|.++|+|
T Consensus 324 ga~ii~~~~~l--~~~-----------------------~LG~~~~ie~~~~~~~r~~~~~g~~~~~~~TI~lrG~t 375 (522)
T TIGR02345 324 GGSIQSTTSDL--EAD-----------------------VLGTCALFEERQIGSERYNYFTGCPHAKTCTIILRGGA 375 (522)
T ss_pred CCeEEcchhhC--Chh-----------------------hccCCceEEEEEECCeEEEEEEcCCCCceEEEEEECCC
Confidence 11111111111 110 011111224567788999999999 9999999986
No 48
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=80.34 E-value=4.6 Score=36.32 Aligned_cols=113 Identities=13% Similarity=0.195 Sum_probs=67.3
Q ss_pred eccCcccccccccceeeecC---ceEEEecccCCcHHHHHHHHHHHHHhC-CCeEEEecCccchHHHHHHHhccccccee
Q 023832 88 GYISPYFITNQKNQKCELED---PLILVHEKKISNLTAVVRVLELALKRQ-RPLLIVAEDVESEALATLILNKLRAGIKV 163 (276)
Q Consensus 88 gy~spyfvt~~~~~~~~l~~---p~Ill~d~~i~~~~~i~p~le~i~~~~-~pLlIiae~i~~~aL~~Lv~n~~~g~~~v 163 (276)
.|.+| |++++++.-..+.+ -.+++.|-.+...+++..+++.+.+.| ++.+.+...-+.+.+..+... .. .+-+
T Consensus 81 ~y~n~-~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~-~~-~~l~ 157 (244)
T PRK13125 81 TYLED-YVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKL-SP-LFIY 157 (244)
T ss_pred Eecch-hhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh-CC-CEEE
Confidence 68899 57777763333322 234555655655678889999999999 466666666666666666543 33 3344
Q ss_pred eEEeCCCCccCc----cchHHhHHhHhCCeEEecCCCc-cccccCc
Q 023832 164 CAIKAPGFGENR----KANMQDLAVLTGGDLITEELGM-DLEKVNL 204 (276)
Q Consensus 164 ~aVkaP~~g~~r----k~~LedIA~~TGg~vi~~~~g~-~l~~~~~ 204 (276)
+.| -|++|..= .+.++.+...+....+.-+.|+ +.+++..
T Consensus 158 msv-~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~ 202 (244)
T PRK13125 158 YGL-RPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARD 202 (244)
T ss_pred EEe-CCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHH
Confidence 565 48887521 1233444455543445566777 6565543
No 49
>PRK14736 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=70.53 E-value=18 Score=29.79 Aligned_cols=38 Identities=11% Similarity=0.230 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCC
Q 023832 228 DKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGG 265 (276)
Q Consensus 228 ~~~~i~~r~~~l~~~~~~~~s~~~~~~L~eRla~L~gg 265 (276)
|.++.++..+..+++++.+.++..|++++.|+.+|+..
T Consensus 90 D~~~a~~a~~~Ae~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (133)
T PRK14736 90 TPEMIDREIEAVEMERDATQDLDKREALNAQIVQMQEA 127 (133)
T ss_pred CHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHH
Confidence 77888888888999898888999999999999998754
No 50
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=69.00 E-value=13 Score=30.36 Aligned_cols=43 Identities=21% Similarity=0.376 Sum_probs=35.0
Q ss_pred HHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCcc
Q 023832 126 VLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRK 176 (276)
Q Consensus 126 ~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk 176 (276)
+.+.+...| .-++|+..+.+-|+++|-...++ ++++|+ ++.+.
T Consensus 57 ~a~~l~~~g-vdvvi~~~iG~~a~~~l~~~GIk------v~~~~~-~~V~e 99 (121)
T COG1433 57 IAELLVDEG-VDVVIASNIGPNAYNALKAAGIK------VYVAPG-GTVEE 99 (121)
T ss_pred HHHHHHHcC-CCEEEECccCHHHHHHHHHcCcE------EEecCC-CCHHH
Confidence 467777788 77788999999999999999888 778888 66653
No 51
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=66.48 E-value=11 Score=26.80 Aligned_cols=52 Identities=19% Similarity=0.296 Sum_probs=36.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccCChHHHHHHhhhcCCCchhHHHHHHHH
Q 023832 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKA 55 (276)
Q Consensus 1 ~~P~~i~rGi~~A~~~v~~~L~~~s~~v~~~~~i~~VA~iSa~~d~~ig~lia~A 55 (276)
++|.+|++.++.|-..+---++=-..||.+.++..+.+..-+ ..+-.|.++|
T Consensus 4 asPv~LR~~lE~A~~La~~GIRFVpiPv~~dee~~~L~s~~~---~kLe~ma~~a 55 (61)
T PF07131_consen 4 ASPVDLRKALEMAHSLAHIGIRFVPIPVVTDEEFHTLSSQLS---QKLERMAAEA 55 (61)
T ss_pred ccHHHHHHHHHHHHHHHHcCceeeccccccHHHHHHHHHHHH---HHHHHHHHHH
Confidence 589999999999865444334445678888888887765443 3566666655
No 52
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=56.71 E-value=18 Score=30.68 Aligned_cols=41 Identities=17% Similarity=0.290 Sum_probs=31.9
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|....+.|+.++++..+.+
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 143 AMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 3789999999987654 4577788887777788888877764
No 53
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=56.19 E-value=19 Score=28.37 Aligned_cols=37 Identities=24% Similarity=0.370 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCeE
Q 023832 231 SIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVA 267 (276)
Q Consensus 231 ~i~~r~~~l~~~~~~~~s~~~~~~L~eRla~L~ggva 267 (276)
..+.|+..+..+++.-++..|-.+|+-+|+++.|.+.
T Consensus 46 ~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~ 82 (106)
T PF10805_consen 46 EHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELK 82 (106)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHH
Confidence 3499999999999999999999999999999999764
No 54
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=54.46 E-value=40 Score=27.38 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=21.1
Q ss_pred cceeeEEeCCCCcc-CccchHHhHHhHhCCeEEec
Q 023832 160 GIKVCAIKAPGFGE-NRKANMQDLAVLTGGDLITE 193 (276)
Q Consensus 160 ~~~v~aVkaP~~g~-~rk~~LedIA~~TGg~vi~~ 193 (276)
..++.+| +||. .....|++||-.|||+.+.-
T Consensus 128 ~i~i~~i---~~g~~~~~~~l~~ia~~~gG~~~~~ 159 (171)
T cd01461 128 RIRLFTF---GIGSDVNTYLLERLAREGRGIARRI 159 (171)
T ss_pred CceEEEE---EeCCccCHHHHHHHHHcCCCeEEEe
Confidence 4455555 3343 34678999999999997654
No 55
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=54.22 E-value=20 Score=36.15 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=37.0
Q ss_pred CchhHHHHHHHHHHhcccC---ccEEEe--cCCcceeeEEEEEeEEEeeeccC
Q 023832 44 GEREIGELIAKAMEKVGKE---GVITIH--DGKTLYNELEVVEGMKLDRGYIS 91 (276)
Q Consensus 44 ~d~~ig~lia~Av~~vg~~---G~I~ie--~g~~~~~~l~v~eG~~fd~gy~s 91 (276)
..+.+++++.+|+..+... ..|.++ +|++++ ++.+++|+.|++++.+
T Consensus 177 ~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~-ds~lv~G~v~~~~~~~ 228 (533)
T PTZ00212 177 EKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLR-DSYLEDGFILEKKIGV 228 (533)
T ss_pred hHHHHHHHHHHHHHHHhccCCccceEEEEecCcCcc-ccEEEEeEEEecccCC
Confidence 4578999999999887432 355664 799998 5999999999998643
No 56
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=53.05 E-value=41 Score=27.18 Aligned_cols=66 Identities=24% Similarity=0.409 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHh------CCCeEEEecCc--cc--hHHHHHHHhcccccceeeEEeCCCCcc-CccchHHhHHhHhCC
Q 023832 120 LTAVVRVLELALKR------QRPLLIVAEDV--ES--EALATLILNKLRAGIKVCAIKAPGFGE-NRKANMQDLAVLTGG 188 (276)
Q Consensus 120 ~~~i~p~le~i~~~------~~pLlIiae~i--~~--~aL~~Lv~n~~~g~~~v~aVkaP~~g~-~rk~~LedIA~~TGg 188 (276)
-.++.+.|+.+.+. -+.++++.++. ++ +.+..+ .+ -++.+++-++ ++|. .....|+.||..+||
T Consensus 77 ~t~l~~aL~~a~~~~~~~~~~~~IilltDG~~~~~~~~i~~~v-~~-~~~~~~i~~~---~~g~~~~~~~L~~LA~~~~G 151 (155)
T PF13768_consen 77 GTDLLAALRAALALLQRPGCVRAIILLTDGQPVSGEEEILDLV-RR-ARGHIRIFTF---GIGSDADADFLRELARATGG 151 (155)
T ss_pred CccHHHHHHHHHHhcccCCCccEEEEEEeccCCCCHHHHHHHH-Hh-cCCCceEEEE---EECChhHHHHHHHHHHcCCC
Confidence 45677888887775 24567788755 22 333333 22 2355666666 4565 567999999999999
Q ss_pred eE
Q 023832 189 DL 190 (276)
Q Consensus 189 ~v 190 (276)
..
T Consensus 152 ~~ 153 (155)
T PF13768_consen 152 SF 153 (155)
T ss_pred EE
Confidence 74
No 57
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=51.43 E-value=53 Score=26.17 Aligned_cols=42 Identities=33% Similarity=0.325 Sum_probs=31.9
Q ss_pred EEecccCCcHHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHH
Q 023832 111 LVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLIL 154 (276)
Q Consensus 111 ll~d~~i~~~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~ 154 (276)
.+.|+. +++.....++.+.+.|.|+++-.-+++++-+..|..
T Consensus 70 VvIDfT--~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~ 111 (124)
T PF01113_consen 70 VVIDFT--NPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEE 111 (124)
T ss_dssp EEEEES---HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHH
T ss_pred EEEEcC--ChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH
Confidence 445653 788899999999999999999888998888777765
No 58
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=50.31 E-value=33 Score=29.22 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=28.9
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCccc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVES 146 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~~ 146 (276)
.+|.++++|.+.+.. +.+..++....+.++.++++..+.+.
T Consensus 125 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~ 170 (192)
T cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSA 170 (192)
T ss_pred cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChH
Confidence 678888888876554 44666777766667777777777653
No 59
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=49.77 E-value=2.1e+02 Score=26.38 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=24.8
Q ss_pred EEEEcCCCCHHHHHHHHHHHHHHH--------HhcCChhHHHHHHHHHHhh
Q 023832 220 TVILDGAGDKKSIEERCEQIRSAI--------ENSTSDYDKEKLQERLAKL 262 (276)
Q Consensus 220 T~i~~g~g~~~~i~~r~~~l~~~~--------~~~~s~~~~~~L~eRla~L 262 (276)
+-++-..+|.+++.+.+.++-..- ...-..|.++++..|+.++
T Consensus 302 ~G~lv~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (359)
T PRK09922 302 NGELYTPGNIDEFVGKLNKVISGEVKYQHDAIPNSIERFYEVLYFKNLNNA 352 (359)
T ss_pred ceEEECCCCHHHHHHHHHHHHhCcccCCHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333335689999999888763222 1222345566666666554
No 60
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=49.27 E-value=33 Score=29.30 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=28.0
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCccch
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVESE 147 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~~~ 147 (276)
.+|.++++|.+.+.. +.+..+|+...+.++.+++++.+.+.+
T Consensus 128 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 174 (194)
T cd03213 128 SNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSE 174 (194)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHH
Confidence 678888888876553 446666766655566777777776543
No 61
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=47.11 E-value=28 Score=30.01 Aligned_cols=41 Identities=22% Similarity=0.488 Sum_probs=31.9
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|....+.|+.+++++.|.+
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~ 199 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN 199 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3789999999987664 4577778777666778888888765
No 62
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=44.97 E-value=36 Score=25.55 Aligned_cols=66 Identities=17% Similarity=0.247 Sum_probs=40.3
Q ss_pred HHHHHHHhCCCeEEEec-CccchHHHHHH-HhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEec
Q 023832 126 VLELALKRQRPLLIVAE-DVESEALATLI-LNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITE 193 (276)
Q Consensus 126 ~le~i~~~~~pLlIiae-~i~~~aL~~Lv-~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~ 193 (276)
.|......-.|++.|.. ++++..+..+- .-.-+..++|-+-+ ...+.+++..+.||-.|||.++..
T Consensus 8 ~Lr~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~~eLvKVk~~~--~~~~~~~~~~~~l~~~t~~~~V~~ 75 (84)
T PF01985_consen 8 FLRKLAHHLKPVVQIGKNGLTDGVIEEIDDALEKHELVKVKVLG--NCREDRKEIAEQLAEKTGAEVVQV 75 (84)
T ss_dssp HHHHHHTTC--SEEE-TTSS-HHHHHHHHHHHHHHSEEEEEETT----HHHHHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHhCCeeEEEEcc--CCHHHHHHHHHHHHHHhCCEEEEE
Confidence 34554445579999988 88887777543 12223344544433 155668899999999999999875
No 63
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=44.79 E-value=30 Score=29.70 Aligned_cols=41 Identities=20% Similarity=0.440 Sum_probs=31.0
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+++...+.++.+++++.+.+
T Consensus 153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 198 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS 198 (214)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3789999999987664 4577778777666777888877765
No 64
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=44.43 E-value=32 Score=28.57 Aligned_cols=41 Identities=7% Similarity=0.267 Sum_probs=31.1
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|....+.+..+++++.+.+
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4899999999987654 4577778777666777777777765
No 65
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=43.98 E-value=37 Score=29.13 Aligned_cols=41 Identities=5% Similarity=0.137 Sum_probs=29.8
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|+...+.+..+++++.+.+
T Consensus 145 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 190 (204)
T PRK13538 145 LTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL 190 (204)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh
Confidence 3789999999987654 4567777776666777777777655
No 66
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=43.69 E-value=31 Score=30.00 Aligned_cols=40 Identities=15% Similarity=0.391 Sum_probs=30.3
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|+.+.+.++.+++++.+.+
T Consensus 150 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~ 194 (232)
T cd03218 150 TNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR 194 (232)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 689999999987654 4577778777766777777777765
No 67
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=43.07 E-value=32 Score=29.44 Aligned_cols=40 Identities=15% Similarity=0.306 Sum_probs=30.5
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+.|+.+++++.+.+
T Consensus 143 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 187 (205)
T cd03226 143 SGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE 187 (205)
T ss_pred hCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 789999999987654 4577777777666777788777765
No 68
>PRK10908 cell division protein FtsE; Provisional
Probab=42.51 E-value=35 Score=29.61 Aligned_cols=40 Identities=20% Similarity=0.420 Sum_probs=30.6
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|..+.+.+..+++++.+.+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (222)
T PRK10908 154 NKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG 198 (222)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 789999999987654 4577778877666777888877765
No 69
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=42.26 E-value=34 Score=29.90 Aligned_cols=40 Identities=20% Similarity=0.416 Sum_probs=31.0
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|..+.+.|+.+++++.+.+
T Consensus 160 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~ 204 (236)
T cd03219 160 TDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD 204 (236)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 689999999987654 4577778777766778888887776
No 70
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=41.79 E-value=40 Score=30.93 Aligned_cols=78 Identities=18% Similarity=0.357 Sum_probs=54.2
Q ss_pred HHHHHHHHhcccCccEEEecCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEecccCCcH-----HHHH
Q 023832 50 ELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNL-----TAVV 124 (276)
Q Consensus 50 ~lia~Av~~vg~~G~I~ie~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~-----~~i~ 124 (276)
+.+-+|+++||-.+...= . +.=+-|=+++|-++. ++=..+|.+|++|.+...+ .+|.
T Consensus 118 ~~v~~aL~~Vgm~~~~~r----~----i~~LSGGQ~QRV~lA----------RAL~~~p~lllLDEP~~gvD~~~~~~i~ 179 (254)
T COG1121 118 EKVDEALERVGMEDLRDR----Q----IGELSGGQKQRVLLA----------RALAQNPDLLLLDEPFTGVDVAGQKEIY 179 (254)
T ss_pred HHHHHHHHHcCchhhhCC----c----ccccCcHHHHHHHHH----------HHhccCCCEEEecCCcccCCHHHHHHHH
Confidence 788899999986533211 1 111123344444443 2334789999999998765 5699
Q ss_pred HHHHHHHHhCCCeEEEecCcc
Q 023832 125 RVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 125 p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|....+.|+-+|++.-|++
T Consensus 180 ~lL~~l~~eg~tIl~vtHDL~ 200 (254)
T COG1121 180 DLLKELRQEGKTVLMVTHDLG 200 (254)
T ss_pred HHHHHHHHCCCEEEEEeCCcH
Confidence 999999999999999999986
No 71
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=41.56 E-value=1.2e+02 Score=28.25 Aligned_cols=79 Identities=18% Similarity=0.274 Sum_probs=52.1
Q ss_pred eEEEecccCCcHHHHHHHHHHHHHhCCCeEEEec-Cc---cc-----hHHHHHHHhcccccceeeEEeCCCCccCccchH
Q 023832 109 LILVHEKKISNLTAVVRVLELALKRQRPLLIVAE-DV---ES-----EALATLILNKLRAGIKVCAIKAPGFGENRKANM 179 (276)
Q Consensus 109 ~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae-~i---~~-----~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~L 179 (276)
-|||....-.++++++-.-|++...|.|-+|.|| +| +. .=++....-|-.--|+|++= |.=+.-|++.+
T Consensus 154 PvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~THLPVivD--pSH~~Grr~lv 231 (286)
T COG2876 154 PVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQETHLPVIVD--PSHATGRRDLV 231 (286)
T ss_pred CeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhhcCCCEEEC--CCCcccchhhH
Confidence 3555666677899999999999999999999999 66 21 12333343444445677665 55555566665
Q ss_pred HhH---HhHhCCe
Q 023832 180 QDL---AVLTGGD 189 (276)
Q Consensus 180 edI---A~~TGg~ 189 (276)
+=+ |++.|+-
T Consensus 232 ~pla~AA~AaGAd 244 (286)
T COG2876 232 EPLAKAAIAAGAD 244 (286)
T ss_pred HHHHHHHHhccCC
Confidence 544 4556654
No 72
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=41.53 E-value=41 Score=28.82 Aligned_cols=39 Identities=28% Similarity=0.301 Sum_probs=30.0
Q ss_pred HHHHHhCCCeEEEecCc-cchHHHHHHHhcccccceeeEE
Q 023832 128 ELALKRQRPLLIVAEDV-ESEALATLILNKLRAGIKVCAI 166 (276)
Q Consensus 128 e~i~~~~~pLlIiae~i-~~~aL~~Lv~n~~~g~~~v~aV 166 (276)
..+.+.+|||+|+.... ++|.+-..++=.-+..++++|-
T Consensus 30 mmIkkAkrPLlivGp~~~dee~~E~~vKi~ekfnipivaT 69 (170)
T COG1880 30 MMIKKAKRPLLIVGPLALDEELLELAVKIIEKFNIPIVAT 69 (170)
T ss_pred HHHHhcCCceEEecccccCHHHHHHHHHHHHhcCCceEec
Confidence 34668899999999954 5888888877766667777775
No 73
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=41.28 E-value=53 Score=28.59 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=28.4
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCccchH
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVESEA 148 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~~~a 148 (276)
.+|.++++|.+.+.. +.+..++....+.+..+++++.+..+++
T Consensus 160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~ 207 (226)
T cd03234 160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDL 207 (226)
T ss_pred hCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHH
Confidence 678888888876543 4566677766655666677766664343
No 74
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=40.43 E-value=38 Score=29.09 Aligned_cols=40 Identities=18% Similarity=0.391 Sum_probs=29.9
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+.++.+++++.+.+
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~ 193 (213)
T cd03235 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG 193 (213)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 789999999987654 4577777777666777777777765
No 75
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=40.36 E-value=59 Score=29.60 Aligned_cols=58 Identities=24% Similarity=0.426 Sum_probs=33.2
Q ss_pred CCeEEEecCccch---HHHHHHHhcccccceeeEEeCCCC-----cc------CccchHHhHHhHhCCeEEe
Q 023832 135 RPLLIVAEDVESE---ALATLILNKLRAGIKVCAIKAPGF-----GE------NRKANMQDLAVLTGGDLIT 192 (276)
Q Consensus 135 ~pLlIiae~i~~~---aL~~Lv~n~~~g~~~v~aVkaP~~-----g~------~rk~~LedIA~~TGg~vi~ 192 (276)
+.++++.++.+.. .+.-++..-.+..+.+-+|-.++. |. ...+.|++||..|||+++.
T Consensus 166 k~iIllTDG~~~~~~~~~~~~~~~~~~~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~ 237 (296)
T TIGR03436 166 KALIVISDGGDNRSRDTLERAIDAAQRADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGRAFY 237 (296)
T ss_pred eEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCeEec
Confidence 4567777765432 222222211233456666654421 11 2457899999999999876
No 76
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=39.91 E-value=39 Score=29.71 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=29.5
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.+|++|.+.+.. +.+..++..+.+.++.++++..|.+
T Consensus 161 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~ 206 (248)
T PRK09580 161 VLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206 (248)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 3789999999887654 4566777776666667777777754
No 77
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=39.89 E-value=39 Score=28.93 Aligned_cols=41 Identities=22% Similarity=0.421 Sum_probs=30.6
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|....+.|+.+++++.+.+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~ 195 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD 195 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3789999999987664 4577777776666777888877765
No 78
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=39.76 E-value=35 Score=32.28 Aligned_cols=43 Identities=21% Similarity=0.410 Sum_probs=36.2
Q ss_pred eecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCccc
Q 023832 104 ELEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVES 146 (276)
Q Consensus 104 ~l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~~ 146 (276)
=+..|.+|+.|.++++. .+++|.||...+. +-|.|-+...+++
T Consensus 143 LLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~E 191 (352)
T COG4148 143 LLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDE 191 (352)
T ss_pred HhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHH
Confidence 45899999999999875 5799999998754 6799999988873
No 79
>TIGR01216 ATP_synt_epsi ATP synthase, F1 epsilon subunit (delta in mitochondria). This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation.
Probab=39.74 E-value=65 Score=26.08 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 023832 226 AGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKL 262 (276)
Q Consensus 226 ~g~~~~i~~r~~~l~~~~~~~~s~~~~~~L~eRla~L 262 (276)
.=|.++.+.+.+..++++..+.++.++.+.+.+|.|.
T Consensus 86 ~id~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~a 122 (130)
T TIGR01216 86 DIDEAEAEKALEAAEKLLESAEDDKDLAEALLKLKKA 122 (130)
T ss_pred cCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Confidence 3488999999999999999888888988888877664
No 80
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=39.62 E-value=39 Score=29.57 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=30.4
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+.|+.+++++.+.+
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~ 205 (243)
T TIGR01978 161 LEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR 205 (243)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH
Confidence 789999999987654 4577778777666777777777765
No 81
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=39.57 E-value=41 Score=28.78 Aligned_cols=41 Identities=15% Similarity=0.327 Sum_probs=29.8
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|..+.+.|+.+++++.+.+
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~ 196 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG 196 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3789999999987654 4577777777666767777766654
No 82
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=39.50 E-value=46 Score=28.63 Aligned_cols=41 Identities=7% Similarity=0.108 Sum_probs=31.9
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|....+.|+.+++++.+.+
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 188 (207)
T PRK13539 143 VSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL 188 (207)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 3789999999987664 5677888877667888888877765
No 83
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=39.08 E-value=46 Score=28.00 Aligned_cols=40 Identities=13% Similarity=0.440 Sum_probs=28.2
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..++....+.++.+++++.+.+
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 165 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD 165 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 789999999877654 4577777776665666666666653
No 84
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=39.04 E-value=41 Score=33.76 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=36.6
Q ss_pred CchhHHHHHHHHHHhccc---CccEEEe--cCCcceeeEEEEEeEEEeeecc
Q 023832 44 GEREIGELIAKAMEKVGK---EGVITIH--DGKTLYNELEVVEGMKLDRGYI 90 (276)
Q Consensus 44 ~d~~ig~lia~Av~~vg~---~G~I~ie--~g~~~~~~l~v~eG~~fd~gy~ 90 (276)
..+.+++++.+|+..+-. ...|.+. .|++++ ++.+++|+.||+.+.
T Consensus 166 ~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~-~s~l~~G~v~~~~~~ 216 (519)
T TIGR02341 166 HKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLN-DSYLDEGFLLEKKIG 216 (519)
T ss_pred HHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcc-cceEEeeEEEeccCC
Confidence 457799999999998732 1357776 799998 599999999998753
No 85
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=39.00 E-value=42 Score=28.73 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=27.1
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+.++.+++++.+.+
T Consensus 121 ~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~ 165 (200)
T cd03217 121 LEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR 165 (200)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 688888888876553 4466667666555666777766654
No 86
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=38.88 E-value=42 Score=29.29 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=30.8
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|..+.+.|..++++..+.+
T Consensus 129 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~ 174 (223)
T TIGR03771 129 ATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLA 174 (223)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 4789999999987654 4577778777666767777777765
No 87
>PRK00571 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=38.74 E-value=1.5e+02 Score=24.08 Aligned_cols=36 Identities=33% Similarity=0.374 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 023832 226 AGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAK 261 (276)
Q Consensus 226 ~g~~~~i~~r~~~l~~~~~~~~s~~~~~~L~eRla~ 261 (276)
.-|.++.+.+.+..++++....++.++.+.+.+|.|
T Consensus 88 ~id~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~ 123 (135)
T PRK00571 88 DIDEARAEEAKERAEEALENKHDDVDYARAQAALAR 123 (135)
T ss_pred hCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Confidence 347889999999999999887777777766555544
No 88
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.63 E-value=43 Score=28.81 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=30.9
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..++....+. |+.+++++.+.+
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 193 (214)
T cd03297 147 AAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS 193 (214)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH
Confidence 3789999999987654 4577777777665 778888887765
No 89
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=38.54 E-value=47 Score=27.71 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=30.2
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|....+.|+.++++..+.+
T Consensus 112 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 112 YGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred hcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 3789999999987653 4577777777666777777777764
No 90
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=38.51 E-value=43 Score=28.85 Aligned_cols=40 Identities=13% Similarity=0.287 Sum_probs=30.0
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+.++.++++..+.+
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 193 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR 193 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 689999999987654 4577778777666777788777765
No 91
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=38.39 E-value=41 Score=29.14 Aligned_cols=41 Identities=10% Similarity=0.252 Sum_probs=27.7
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|....+.|+.+++++.+.+
T Consensus 140 ~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~ 185 (223)
T TIGR03740 140 LNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS 185 (223)
T ss_pred hcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 3678888888876654 4466677666555666777666654
No 92
>PRK13695 putative NTPase; Provisional
Probab=38.37 E-value=1.6e+02 Score=24.35 Aligned_cols=40 Identities=18% Similarity=0.383 Sum_probs=29.9
Q ss_pred eecCceEEEecc--cCCc-HHHHHHHHHHHHHhCCCeEEEecC
Q 023832 104 ELEDPLILVHEK--KISN-LTAVVRVLELALKRQRPLLIVAED 143 (276)
Q Consensus 104 ~l~~p~Ill~d~--~i~~-~~~i~p~le~i~~~~~pLlIiae~ 143 (276)
.+.+|.+++.|. .... ...+...++.+.+.++|++++..+
T Consensus 93 ~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~ 135 (174)
T PRK13695 93 ALEEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHR 135 (174)
T ss_pred ccCCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECc
Confidence 456899999997 3332 245778888888889999988875
No 93
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=38.11 E-value=42 Score=28.70 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=29.5
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|....+.++.+++++.+.+
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 187 (208)
T cd03268 142 LGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS 187 (208)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 3789999999987653 4577777777666667777766665
No 94
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.78 E-value=45 Score=28.82 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=30.3
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|....+. ++.++++..+.+
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~ 193 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME 193 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3789999999987654 4577777776665 777888777765
No 95
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=37.68 E-value=52 Score=28.29 Aligned_cols=42 Identities=26% Similarity=0.408 Sum_probs=32.3
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHH-hCCCeEEEecCccc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALK-RQRPLLIVAEDVES 146 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~-~~~pLlIiae~i~~ 146 (276)
+.+|.+|++|.+.+.. +.+..+|....+ .++.++++..+.+.
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 203 (218)
T cd03255 156 ANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL 203 (218)
T ss_pred ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 4789999999988664 457777887766 47788888888753
No 96
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=37.29 E-value=45 Score=29.25 Aligned_cols=41 Identities=17% Similarity=0.366 Sum_probs=30.5
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|....+.++.+++++.+.+
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 197 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG 197 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3789999999987654 4577777777666777788777765
No 97
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=37.26 E-value=48 Score=28.18 Aligned_cols=41 Identities=24% Similarity=0.439 Sum_probs=31.7
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|....+.+..+++++.+.+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 195 (206)
T TIGR03608 150 LKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE 195 (206)
T ss_pred HcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3799999999987664 4577778777666778888887764
No 98
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=37.25 E-value=84 Score=28.49 Aligned_cols=76 Identities=14% Similarity=0.065 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCcc
Q 023832 119 NLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMD 198 (276)
Q Consensus 119 ~~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~ 198 (276)
+.+++..+.+.+.+.| +..++.-++.+++.+|..-+.. ++|.+++-=.-...|+.+|. ||-.+|-+--+-+
T Consensus 54 ~~e~~~~L~~~~~~~g--i~f~stpfd~~s~d~l~~~~~~------~~KIaS~dl~n~~lL~~~A~-tgkPvIlSTG~st 124 (241)
T PF03102_consen 54 SEEQHKELFEYCKELG--IDFFSTPFDEESVDFLEELGVP------AYKIASGDLTNLPLLEYIAK-TGKPVILSTGMST 124 (241)
T ss_dssp -HHHHHHHHHHHHHTT---EEEEEE-SHHHHHHHHHHT-S------EEEE-GGGTT-HHHHHHHHT-T-S-EEEE-TT--
T ss_pred CHHHHHHHHHHHHHcC--CEEEECCCCHHHHHHHHHcCCC------EEEeccccccCHHHHHHHHH-hCCcEEEECCCCC
Confidence 4567888888887766 7788889999999999776544 99999965556677888887 8888776532224
Q ss_pred ccccC
Q 023832 199 LEKVN 203 (276)
Q Consensus 199 l~~~~ 203 (276)
++++.
T Consensus 125 l~EI~ 129 (241)
T PF03102_consen 125 LEEIE 129 (241)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 99
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=37.11 E-value=52 Score=25.58 Aligned_cols=30 Identities=20% Similarity=0.450 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 023832 228 DKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKL 262 (276)
Q Consensus 228 ~~~~i~~r~~~l~~~~~~~~s~~~~~~L~eRla~L 262 (276)
....|.+.++.|++++.... .+.-|||+|+
T Consensus 3 ~~s~I~~eIekLqe~lk~~e-----~keaERigr~ 32 (92)
T PF07820_consen 3 SSSKIREEIEKLQEQLKQAE-----TKEAERIGRI 32 (92)
T ss_pred cHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 45678999999999987754 5666888776
No 100
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=36.62 E-value=59 Score=27.80 Aligned_cols=40 Identities=5% Similarity=0.066 Sum_probs=27.7
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.+++.|.+.+.. +.+..+|....+.|+.+++++.+..
T Consensus 142 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 186 (201)
T cd03231 142 SGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL 186 (201)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 688888888877654 4566667666555767777766544
No 101
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=36.61 E-value=83 Score=26.55 Aligned_cols=53 Identities=11% Similarity=0.165 Sum_probs=33.5
Q ss_pred CeEEEecCccchHHHHHHHhc-ccc---cceeeEEeCCCCccC--ccchHHhHHhHhCCeEE
Q 023832 136 PLLIVAEDVESEALATLILNK-LRA---GIKVCAIKAPGFGEN--RKANMQDLAVLTGGDLI 191 (276)
Q Consensus 136 pLlIiae~i~~~aL~~Lv~n~-~~g---~~~v~aVkaP~~g~~--rk~~LedIA~~TGg~vi 191 (276)
.++++.++.+...-..+...+ .++ .++|..| |||.. ....|+.||..+||+..
T Consensus 126 ~iillTDG~~~~~~~~~~~~~~~~~~~~~v~i~ti---giG~~~~d~~~L~~lA~~~~G~~~ 184 (190)
T cd01463 126 AIMLITDGVPENYKEIFDKYNWDKNSEIPVRVFTY---LIGREVTDRREIQWMACENKGYYS 184 (190)
T ss_pred EEEEEeCCCCCcHhHHHHHhcccccCCCcEEEEEE---ecCCccccchHHHHHHhhcCCeEE
Confidence 477788877654444343322 122 3555555 45753 47899999999999865
No 102
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=36.59 E-value=47 Score=29.34 Aligned_cols=40 Identities=8% Similarity=0.192 Sum_probs=27.8
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|..+.+.|+.+++++.+.+
T Consensus 168 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~ 212 (252)
T CHL00131 168 LDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR 212 (252)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 688888888877654 4466667666665667777766654
No 103
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=36.30 E-value=46 Score=29.37 Aligned_cols=40 Identities=18% Similarity=0.401 Sum_probs=29.2
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+|+.+.+.|+.+++++.+.+
T Consensus 161 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~ 205 (250)
T PRK11264 161 MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS 205 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 788999999877654 4577777777666767777776765
No 104
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=36.02 E-value=46 Score=30.04 Aligned_cols=41 Identities=5% Similarity=0.276 Sum_probs=30.6
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|....+.|+.++++..+.+
T Consensus 158 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~ 203 (272)
T PRK15056 158 AQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG 203 (272)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 3789999999987664 4577777777666777777777765
No 105
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=36.02 E-value=53 Score=28.34 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=28.8
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|....+. |+.+++++.+.+
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 207 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG 207 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3788889998887654 4466777766654 667777777765
No 106
>KOG3633 consensus BAG family molecular chaperone regulator 2 [Posttranslational modification, protein turnover, chaperones]
Probab=35.81 E-value=71 Score=28.01 Aligned_cols=45 Identities=29% Similarity=0.369 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHh----------------------cCChhHHHHHHHHHHhhcCCeEEEEeCc
Q 023832 229 KKSIEERCEQIRSAIEN----------------------STSDYDKEKLQERLAKLSGGVAVLKVCC 273 (276)
Q Consensus 229 ~~~i~~r~~~l~~~~~~----------------------~~s~~~~~~L~eRla~L~ggvavi~vGg 273 (276)
-+.++.|+++||+..-+ --|+-|||.+.-=+.||+|..+.+.|-=
T Consensus 51 LD~lelrVE~LRk~A~~le~eKe~lL~s~~~I~~~~~M~~~se~eREEi~l~~~Rl~~Rt~TVev~V 117 (219)
T KOG3633|consen 51 LDSLELRVEKLRKDALNLEEEKEYLLMSMDLIKSNEMMQNMSEAEREEIILYLQRLSSRTATVEVRV 117 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHhcccceEEEEE
Confidence 36789999998874322 1267788888888999999999887743
No 107
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=35.74 E-value=49 Score=28.48 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=30.7
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.+|++|.+.+.. +.+..+|....+.++.+++++.+.+
T Consensus 152 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 197 (218)
T cd03266 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ 197 (218)
T ss_pred hcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3789999999987664 4577777777666777777777765
No 108
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=35.69 E-value=1.1e+02 Score=23.29 Aligned_cols=51 Identities=25% Similarity=0.238 Sum_probs=33.7
Q ss_pred HHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCe
Q 023832 129 LALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGD 189 (276)
Q Consensus 129 ~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~ 189 (276)
.+.+...-+++||+|+++....-|..---...++++=| +. .++|..+||-.
T Consensus 24 ai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V------~s----~~~LGkAcgi~ 74 (84)
T PRK13600 24 ALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFF------KS----KHALGKHVGIN 74 (84)
T ss_pred HHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE------CC----HHHHHHHhCCC
Confidence 33345567999999999998876665555556667666 22 25666666543
No 109
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.56 E-value=46 Score=28.49 Aligned_cols=40 Identities=18% Similarity=0.385 Sum_probs=29.9
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|+...+.++.++++..+.+
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~ 189 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME 189 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 789999999987654 4577778777666767777777765
No 110
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.53 E-value=50 Score=28.82 Aligned_cols=41 Identities=12% Similarity=0.391 Sum_probs=30.1
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
+.+|.+|++|.+.+.. +.+..+|....+. |+.+++++.+.+
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~ 206 (241)
T cd03256 160 MQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD 206 (241)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3789999999987654 4577777776653 777888777765
No 111
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=35.48 E-value=4.7e+02 Score=26.41 Aligned_cols=123 Identities=13% Similarity=0.125 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhCCCeEEEecCcc----chHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCcc
Q 023832 123 VVRVLELALKRQRPLLIVAEDVE----SEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMD 198 (276)
Q Consensus 123 i~p~le~i~~~~~pLlIiae~i~----~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~ 198 (276)
|..+-..+.+.+.|+||+=++.+ |-++..|..+=---.++|.++++|.--+.+..+|.+.-..+-+. ++
T Consensus 286 L~~lq~~l~~~~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~~~Pt~~E~~~~~lwRf~~~lP~~--G~----- 358 (493)
T TIGR03708 286 LAKLQRDPRFRKRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPIAAPTDEEKAQHYLWRFWRHIPRR--GR----- 358 (493)
T ss_pred HHHHHHHHHhCCCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeCCCcCHHHHcCcHHHHHHHhCCCC--Ce-----
Confidence 44444445567789999988664 46777777765566899999999999999999999988765432 00
Q ss_pred ccccCcccCceeeEEEEeCCcEEEEcCCCCHHHHHHHHHHHHH---HHHhc-----------CChhHHHHHHHHHH
Q 023832 199 LEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRS---AIENS-----------TSDYDKEKLQERLA 260 (276)
Q Consensus 199 l~~~~~~~LG~a~~v~v~~~~T~i~~g~g~~~~i~~r~~~l~~---~~~~~-----------~s~~~~~~L~eRla 260 (276)
+-=++-+..|.+---.| .|.-+.+..+.|.++|+. +|... +.++.+++|++|+.
T Consensus 359 i~iFdRSwY~~vlverv--------~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~LhIsk~EQ~~R~~~r~~ 426 (493)
T TIGR03708 359 ITIFDRSWYGRVLVERV--------EGFCSEAEWLRAYGEINDFEEQLTEHGAIVVKFWLHIDKEEQLRRFEEREN 426 (493)
T ss_pred EEEEcCCccCCcceeee--------cCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEcCHHHHHHHHHHHhc
Confidence 11133455555421112 254568899999999876 22211 23555788888763
No 112
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=35.46 E-value=47 Score=29.07 Aligned_cols=40 Identities=13% Similarity=0.311 Sum_probs=26.8
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.|+++|.+.+.. +.+..+|....+.|+.+++++.+.+
T Consensus 154 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (237)
T PRK11614 154 SQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN 198 (237)
T ss_pred hCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH
Confidence 688888888876553 3466667666655666666666654
No 113
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=35.43 E-value=49 Score=29.46 Aligned_cols=41 Identities=17% Similarity=0.433 Sum_probs=31.0
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|..+.+.|+.++++..+.+
T Consensus 168 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~ 213 (257)
T PRK10619 168 AMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG 213 (257)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4789999999987654 4577777777766778888877765
No 114
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=35.19 E-value=1.7e+02 Score=23.62 Aligned_cols=56 Identities=11% Similarity=0.193 Sum_probs=41.3
Q ss_pred CceEEEec---ccCCcHHHHHHHHHHHHHhCCCeEEEec-C-----------ccchHHHHHHHhcccccceeeEE
Q 023832 107 DPLILVHE---KKISNLTAVVRVLELALKRQRPLLIVAE-D-----------VESEALATLILNKLRAGIKVCAI 166 (276)
Q Consensus 107 ~p~Ill~d---~~i~~~~~i~p~le~i~~~~~pLlIiae-~-----------i~~~aL~~Lv~n~~~g~~~v~aV 166 (276)
+-+|+.+. ..|++.++.+.++-.+-.++...+++-+ . +-++.||-|+-.+++ ++.|
T Consensus 5 ~~~v~~~~s~~~~i~~~qdalDLi~~~~~~~~~~i~l~~~~l~~dFF~L~TglAGeiLQKf~NY~ik----lAiv 75 (113)
T PF13788_consen 5 GIRVAEVSSDEPLISDEQDALDLIGTAYEHGADRIILPKEALSEDFFDLRTGLAGEILQKFVNYRIK----LAIV 75 (113)
T ss_pred CeEEEEEeCCCCeecchhHHHHHHHHHHHcCCCEEEEEhHHCCHHHHHhhcchHHHHHHHHHhhcee----EEEE
Confidence 34444443 3688999999999999888999888844 2 367788888888775 5555
No 115
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.83 E-value=54 Score=27.47 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=28.2
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+. ++.+++++.+.+
T Consensus 117 ~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 162 (178)
T cd03229 117 MDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD 162 (178)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 788888888877654 4466777776665 567777776654
No 116
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=34.81 E-value=1.1e+02 Score=26.13 Aligned_cols=38 Identities=13% Similarity=0.223 Sum_probs=24.5
Q ss_pred HHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEec
Q 023832 148 ALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITE 193 (276)
Q Consensus 148 aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~ 193 (276)
+...+..++++ +.++++ |. .-..|+.||..|||+.+.-
T Consensus 128 ~~~~l~~~~I~--v~~Igi-----G~-~~~~L~~ia~~tgG~~~~~ 165 (183)
T cd01453 128 TIDKLKKENIR--VSVIGL-----SA-EMHICKEICKATNGTYKVI 165 (183)
T ss_pred HHHHHHHcCcE--EEEEEe-----ch-HHHHHHHHHHHhCCeeEee
Confidence 34445455442 455555 32 2357999999999998865
No 117
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=34.75 E-value=52 Score=28.75 Aligned_cols=41 Identities=20% Similarity=0.413 Sum_probs=29.3
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|....+. ++.++++..+.+
T Consensus 141 ~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 187 (230)
T TIGR02770 141 LLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG 187 (230)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3789999999987664 3466777776654 667777766765
No 118
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=34.72 E-value=52 Score=28.92 Aligned_cols=40 Identities=15% Similarity=0.333 Sum_probs=28.8
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+++.+.+.|+.+++++.+.+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 198 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR 198 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH
Confidence 789999999987654 4466777776666777777776654
No 119
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=34.35 E-value=59 Score=27.27 Aligned_cols=41 Identities=20% Similarity=0.428 Sum_probs=29.0
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+++...+. ++.+++++.+.+
T Consensus 113 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 113 AQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3789999999987554 4577777776655 666777766655
No 120
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=34.33 E-value=59 Score=28.12 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=25.4
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|+...+.|+-+++++.+.+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (214)
T PRK13543 154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY 198 (214)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 678888888776554 3455666665565666666655554
No 121
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=34.10 E-value=55 Score=33.01 Aligned_cols=42 Identities=12% Similarity=0.353 Sum_probs=36.2
Q ss_pred ecCceEEEecccCC-----cHHHHHHHHHHHHHhCCCeEEEecCccc
Q 023832 105 LEDPLILVHEKKIS-----NLTAVVRVLELALKRQRPLLIVAEDVES 146 (276)
Q Consensus 105 l~~p~Ill~d~~i~-----~~~~i~p~le~i~~~~~pLlIiae~i~~ 146 (276)
..+|+||++|.+-. ...+|..++...++.|.++|+|+.+..+
T Consensus 417 ~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpE 463 (500)
T COG1129 417 ATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPE 463 (500)
T ss_pred hcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence 37899999999754 4478999999999999999999988763
No 122
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=34.05 E-value=1.2e+02 Score=25.97 Aligned_cols=53 Identities=23% Similarity=0.410 Sum_probs=30.6
Q ss_pred CCeEEEecCccch---HHH---HHHHhc-ccccceeeEEeCCCCccC-ccchHHhHHhHhCCeE
Q 023832 135 RPLLIVAEDVESE---ALA---TLILNK-LRAGIKVCAIKAPGFGEN-RKANMQDLAVLTGGDL 190 (276)
Q Consensus 135 ~pLlIiae~i~~~---aL~---~Lv~n~-~~g~~~v~aVkaP~~g~~-rk~~LedIA~~TGg~v 190 (276)
+-++++.++.+.. ... .+.... ....+++-.| +||.. ....|+.||..|||++
T Consensus 136 ~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~i~i~~i---giG~~~~~~~l~~iA~~tgG~~ 196 (206)
T cd01456 136 NVVVLITDGEDTCGPDPCEVARELAKRRTPAPPIKVNVI---DFGGDADRAELEAIAEATGGTY 196 (206)
T ss_pred ceEEEEcCCCccCCCCHHHHHHHHHHhcCCCCCceEEEE---EecCcccHHHHHHHHHhcCCeE
Confidence 4567777754321 222 222221 1134555555 44543 5688999999999997
No 123
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.04 E-value=55 Score=28.61 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=30.7
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|....+. |+.+++++.+.+
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~ 198 (235)
T cd03261 152 ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD 198 (235)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 3689999999987664 4577777776653 778888887776
No 124
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=33.89 E-value=65 Score=27.88 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=29.0
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecC
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAED 143 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~ 143 (276)
+.+|.++++|.+.+.. +.+..+|....+.|+.+++++.+
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~ 208 (224)
T TIGR02324 165 IADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHD 208 (224)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3789999999987654 45777777776667778887776
No 125
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=33.66 E-value=58 Score=29.34 Aligned_cols=56 Identities=20% Similarity=0.442 Sum_probs=40.2
Q ss_pred Ccccccccccceeee-----cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCccc
Q 023832 91 SPYFITNQKNQKCEL-----EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVES 146 (276)
Q Consensus 91 spyfvt~~~~~~~~l-----~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~~ 146 (276)
+||-.+.-+++++-+ -+|.|+++|.+-+.. .+++.++....+. |.-++++..|++.
T Consensus 135 ~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~ 201 (235)
T COG1122 135 PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLEL 201 (235)
T ss_pred CccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH
Confidence 455555556665555 689999999987764 5688888888777 4567777778764
No 126
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=33.56 E-value=55 Score=29.12 Aligned_cols=40 Identities=10% Similarity=0.253 Sum_probs=31.1
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|..+.+.+..+++++.+.+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (256)
T TIGR03873 154 QEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN 198 (256)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 789999999987653 4577888887766777888877766
No 127
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=33.48 E-value=60 Score=28.37 Aligned_cols=40 Identities=18% Similarity=0.449 Sum_probs=29.6
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHH-hCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALK-RQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~-~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+ .|+.++++..+.+
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~ 207 (233)
T PRK11629 162 NNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ 207 (233)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 789999999987654 457777777665 3677788777765
No 128
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=33.47 E-value=60 Score=27.79 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=30.1
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+++...+.++-+++++.+.+
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~ 197 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE 197 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 4789999999987664 4577777776666767777777654
No 129
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=33.38 E-value=67 Score=27.37 Aligned_cols=40 Identities=5% Similarity=0.198 Sum_probs=29.2
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDV 144 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i 144 (276)
+.+|.++++|.+.+.. +.+..+|....+.+..+++++.+.
T Consensus 143 ~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 187 (200)
T PRK13540 143 MSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQD 187 (200)
T ss_pred hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCc
Confidence 4799999999987664 457777777666676777776654
No 130
>CHL00063 atpE ATP synthase CF1 epsilon subunit
Probab=33.15 E-value=2.1e+02 Score=23.32 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 023832 227 GDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAK 261 (276)
Q Consensus 227 g~~~~i~~r~~~l~~~~~~~~s~~~~~~L~eRla~ 261 (276)
=|.++.+...+..++++..+.++.++.+.+.+|.|
T Consensus 87 ID~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~r 121 (134)
T CHL00063 87 IDPQEAQQTLEIAEANLEKAEGKKQKIEANLALKR 121 (134)
T ss_pred CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 47888888889999999887777776666555544
No 131
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=32.88 E-value=57 Score=29.36 Aligned_cols=41 Identities=12% Similarity=0.325 Sum_probs=30.3
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|..+.+.|..++++..|.+
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~ 197 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID 197 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3789999999987654 4577777777666767777777765
No 132
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=32.71 E-value=47 Score=23.67 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhH
Q 023832 228 DKKSIEERCEQIRSAIENSTSDYD 251 (276)
Q Consensus 228 ~~~~i~~r~~~l~~~~~~~~s~~~ 251 (276)
+-+.++.||+.|+.+|++....-.
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999988754433
No 133
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.69 E-value=61 Score=28.47 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=26.0
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+. |+.+++++.+.+
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~ 198 (239)
T cd03296 153 VEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE 198 (239)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 678888888876654 3466666666554 566666666654
No 134
>PF10410 DnaB_bind: DnaB-helicase binding domain of primase; InterPro: IPR019475 This entry represents the C-terminal region three-helical domain of DNA primase []. Primases synthesise short RNA strands on single-stranded DNA templates, thereby generating the hybrid duplexes required for the initiation of synthesis by DNA polymerases. Primases are recruited to single-stranded DNA by helicases - this domain binds DnaB-helicase []. It is associated with the Toprim domain IPR006171 from INTERPRO, which is the central catalytic core. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=32.62 E-value=1.4e+02 Score=19.95 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcC
Q 023832 227 GDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSG 264 (276)
Q Consensus 227 g~~~~i~~r~~~l~~~~~~~~s~~~~~~L~eRla~L~g 264 (276)
++++.-..=++.+...+....++.+|+-+-+++|+..|
T Consensus 16 ~~~egk~~~~~~~~~~i~~i~~~i~r~~y~~~la~~~~ 53 (59)
T PF10410_consen 16 DTPEGKAEAVREAAPLIAQIPDPIERELYIRELAERLG 53 (59)
T ss_dssp TSHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 45555566667777788888899999999999999887
No 135
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=32.57 E-value=60 Score=28.51 Aligned_cols=41 Identities=20% Similarity=0.404 Sum_probs=29.3
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+++.+.+.|+.+++++.+.+
T Consensus 157 ~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 202 (242)
T PRK11124 157 MMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE 202 (242)
T ss_pred hcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3689999999887654 3466777776666767777777765
No 136
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=32.48 E-value=60 Score=30.84 Aligned_cols=40 Identities=18% Similarity=0.468 Sum_probs=32.7
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. ++++.+|..+.+. |..++++..+.+
T Consensus 157 ~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~ 202 (343)
T TIGR02314 157 SNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD 202 (343)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 799999999988764 4688888888765 788898888765
No 137
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=32.16 E-value=65 Score=28.19 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=28.2
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+|+...+. |+.++++..+.+
T Consensus 162 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~ 207 (243)
T TIGR02315 162 QQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD 207 (243)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 789999999887654 3466777776553 667777776665
No 138
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=32.04 E-value=63 Score=29.00 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=30.7
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
+.+|.+|++|.+.+.. +.+..+|..+.+. |..+|+++.+.+
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~ 209 (265)
T PRK10575 163 AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN 209 (265)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3789999999987664 4567778777654 777888877765
No 139
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=31.79 E-value=96 Score=31.71 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=21.6
Q ss_pred CcHHHHHHHHHHHHHhCCCeEEEecCccch
Q 023832 118 SNLTAVVRVLELALKRQRPLLIVAEDVESE 147 (276)
Q Consensus 118 ~~~~~i~p~le~i~~~~~pLlIiae~i~~~ 147 (276)
|++.-|.-+++.+.+.||++++...+..-.
T Consensus 236 Sni~Ri~~i~~~A~~~gR~vvv~GrSm~~~ 265 (555)
T COG0595 236 SNIERIQTIIDAAEKLGRKVVVTGRSMERL 265 (555)
T ss_pred hhHHHHHHHHHHHHHcCCeEEEEcHhHHHH
Confidence 444557777888888899999887766543
No 140
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=31.68 E-value=60 Score=28.39 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=26.0
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|+...+.++.+++++.+.+
T Consensus 159 ~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~ 203 (224)
T cd03220 159 LEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS 203 (224)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 678888888876554 3466667666555556666666654
No 141
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=31.55 E-value=65 Score=28.51 Aligned_cols=40 Identities=15% Similarity=0.333 Sum_probs=24.9
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+|+...+. +..+++++.+.+
T Consensus 165 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~ 210 (253)
T TIGR02323 165 TRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG 210 (253)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 678888888776554 3466666665543 556666665544
No 142
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=31.39 E-value=65 Score=28.21 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=29.1
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+. |+.+++++.+.+
T Consensus 131 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 176 (230)
T TIGR01184 131 IRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD 176 (230)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 789999999987654 4577777666554 667777777765
No 143
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=31.36 E-value=1.3e+02 Score=22.10 Aligned_cols=51 Identities=12% Similarity=0.298 Sum_probs=35.1
Q ss_pred cCceEEEecccCCcHHHHHHHHHHHHHhC--CCeEEEecCccchHHHHHHHhcc
Q 023832 106 EDPLILVHEKKISNLTAVVRVLELALKRQ--RPLLIVAEDVESEALATLILNKL 157 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~~~i~p~le~i~~~~--~pLlIiae~i~~~aL~~Lv~n~~ 157 (276)
.+|-++++|..++. .+.+.+++.+.+.+ .|+++++..-+..........+.
T Consensus 42 ~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~ 94 (112)
T PF00072_consen 42 HPPDLIIIDLELPD-GDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGA 94 (112)
T ss_dssp STESEEEEESSSSS-SBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTE
T ss_pred cCceEEEEEeeecc-ccccccccccccccccccEEEecCCCCHHHHHHHHHCCC
Confidence 44889999988887 45556667766654 68888887766555555555544
No 144
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.14 E-value=66 Score=27.52 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=28.5
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|....+. ++.++++..+.+
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 190 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE 190 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 3789999999887654 4566777766543 667777766664
No 145
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=30.94 E-value=65 Score=28.64 Aligned_cols=41 Identities=12% Similarity=0.303 Sum_probs=29.8
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|....+.++.++|++.+.+
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~ 199 (255)
T PRK11231 154 AQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN 199 (255)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 3789999999987664 4466777766656777777777765
No 146
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=30.91 E-value=67 Score=28.55 Aligned_cols=40 Identities=15% Similarity=0.391 Sum_probs=20.2
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+|+...+. |+.+++++.+.+
T Consensus 157 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~ 202 (254)
T PRK10418 157 CEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG 202 (254)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 566666666655443 2344555554432 445555544443
No 147
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=30.84 E-value=79 Score=26.83 Aligned_cols=41 Identities=7% Similarity=0.050 Sum_probs=27.8
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..++....+.++.+++++.+.+
T Consensus 139 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 184 (195)
T PRK13541 139 ACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES 184 (195)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence 3789999999887654 3455556544455677777777665
No 148
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=30.73 E-value=70 Score=27.36 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=29.0
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..++....+. ++.+++++.+.+
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~ 192 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV 192 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3789999999987654 3466777766553 667777777764
No 149
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=30.69 E-value=71 Score=30.33 Aligned_cols=41 Identities=15% Similarity=0.416 Sum_probs=34.2
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHH-hCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALK-RQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~-~~~pLlIiae~i~ 145 (276)
.-+|++|+.|.+-+.. .+|+.+|+.+.+ .|..+++|.-|+.
T Consensus 169 a~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~ 215 (316)
T COG0444 169 ALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG 215 (316)
T ss_pred hCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3799999999976654 479999998886 7889999999876
No 150
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=30.68 E-value=73 Score=27.89 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=26.5
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHH-hCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALK-RQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~-~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+ .|+.+++++.+.+
T Consensus 149 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 194 (236)
T TIGR03864 149 HRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD 194 (236)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 678888888876654 446666666654 3666677666654
No 151
>COG3535 Uncharacterized conserved protein [Function unknown]
Probab=30.66 E-value=1.3e+02 Score=28.93 Aligned_cols=37 Identities=35% Similarity=0.530 Sum_probs=24.5
Q ss_pred ChHHHHHHhhhcC------CCchhHHHHHHH-HHHhcccCccEEEec
Q 023832 30 TSEEIAQVGTISA------NGEREIGELIAK-AMEKVGKEGVITIHD 69 (276)
Q Consensus 30 ~~~~i~~VA~iSa------~~d~~ig~lia~-Av~~vg~~G~I~ie~ 69 (276)
+.++|.++|.=++ ++|+.+|.+.+. ||++.+ -|.|..
T Consensus 6 ~~~di~~la~Ga~iLGtGGGGdpyig~lm~~~~~~~~~---~i~vl~ 49 (357)
T COG3535 6 SEEDIENLAIGAAILGTGGGGDPYIGKLMALRAMKEGG---PIKVLD 49 (357)
T ss_pred cHhHHHHHhhhheeeccCCCCCchHHHHHHHHHHHhcC---CeEEee
Confidence 3578888887664 489999997665 555444 444443
No 152
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=30.49 E-value=75 Score=27.67 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=29.3
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.... +.+..+|....+. |..+++++.+.+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~ 199 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD 199 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH
Confidence 3789999999987553 4566777776553 667778777765
No 153
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=30.40 E-value=66 Score=30.62 Aligned_cols=41 Identities=20% Similarity=0.362 Sum_probs=32.9
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
..+|.+|++|.+.+.. +.+...|..+.+. |.+.+++..|.+
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 196 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV 196 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3799999999999876 4577778877664 788888888764
No 154
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=30.33 E-value=85 Score=26.63 Aligned_cols=42 Identities=14% Similarity=0.175 Sum_probs=29.5
Q ss_pred eecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 104 ELEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 104 ~l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
-+.+|.+++.|.+.+.. +.+..++....+.|..++++..+-.
T Consensus 142 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 142 WLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 34789999999987654 4577777766666767777766543
No 155
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=30.24 E-value=67 Score=28.59 Aligned_cols=40 Identities=15% Similarity=0.343 Sum_probs=24.6
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+|..+.+. |..+++++.+.+
T Consensus 168 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~ 213 (258)
T PRK11701 168 THPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA 213 (258)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 678888888876553 3455666655543 555666655554
No 156
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=30.22 E-value=1.4e+02 Score=24.49 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=16.4
Q ss_pred CccchHHhHHhHhCCeEEec
Q 023832 174 NRKANMQDLAVLTGGDLITE 193 (276)
Q Consensus 174 ~rk~~LedIA~~TGg~vi~~ 193 (276)
...+.|+.||-.|||++..-
T Consensus 155 ~~~~~l~~la~~tgG~~~~~ 174 (180)
T cd01467 155 LDEDSLVEIADKTGGRIFRA 174 (180)
T ss_pred CCHHHHHHHHHhcCCEEEEe
Confidence 45678999999999987654
No 157
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=30.08 E-value=66 Score=30.47 Aligned_cols=40 Identities=20% Similarity=0.444 Sum_probs=32.0
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|..+.+. |.++++++.|.+
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~ 190 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD 190 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Confidence 799999999998765 4577778777665 788999888875
No 158
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.92 E-value=76 Score=27.19 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=27.5
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHH-hCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALK-RQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~-~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+ .|+.+++++.+.+
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 192 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE 192 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 788888888877553 446666766654 3667777776654
No 159
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=29.91 E-value=71 Score=28.64 Aligned_cols=41 Identities=20% Similarity=0.407 Sum_probs=29.0
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
+.+|.+|++|.+.+.. +.+..+|+...+. |+-+++++.+.+
T Consensus 166 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~ 212 (265)
T TIGR02769 166 AVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR 212 (265)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 3689999999887664 3467777776654 666777776765
No 160
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.86 E-value=73 Score=26.51 Aligned_cols=40 Identities=23% Similarity=0.352 Sum_probs=27.8
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|+...+.|.-++++..+.+
T Consensus 112 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~ 156 (173)
T cd03230 112 HDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE 156 (173)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 689999999877654 4577777777665655666655644
No 161
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=29.82 E-value=68 Score=26.81 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecCCCcc
Q 023832 123 VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMD 198 (276)
Q Consensus 123 i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~~g~~ 198 (276)
.-.+++.+.+.|+|++| |-|+.+. -+..+.||...|+..+..+-.++
T Consensus 65 ~~evi~~I~~~G~PviV-AtDV~p~----------------------------P~~V~Kia~~f~A~ly~P~~dls 111 (138)
T PF04312_consen 65 RSEVIEWISEYGKPVIV-ATDVSPP----------------------------PETVKKIARSFNAVLYTPERDLS 111 (138)
T ss_pred HHHHHHHHHHcCCEEEE-EecCCCC----------------------------cHHHHHHHHHhCCcccCCCCcCC
Confidence 44456788899999755 6677632 23467789999998887754444
No 162
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=29.79 E-value=78 Score=27.26 Aligned_cols=41 Identities=17% Similarity=0.409 Sum_probs=30.3
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|....+. ++.++++..+.+
T Consensus 157 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~ 203 (221)
T TIGR02211 157 VNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE 203 (221)
T ss_pred hCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3789999999988764 4577777776654 667777777765
No 163
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=29.75 E-value=71 Score=28.77 Aligned_cols=40 Identities=13% Similarity=0.251 Sum_probs=29.1
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+. |+.++++..|.+
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~ 205 (269)
T PRK11831 160 LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP 205 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 789999999987654 4566777776554 677888777754
No 164
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=29.72 E-value=81 Score=28.90 Aligned_cols=42 Identities=26% Similarity=0.456 Sum_probs=32.0
Q ss_pred ecCceEEEecccCCcHHHHHHH------HHHHHHhCCCeEEEecCccc
Q 023832 105 LEDPLILVHEKKISNLTAVVRV------LELALKRQRPLLIVAEDVES 146 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~~~i~p~------le~i~~~~~pLlIiae~i~~ 146 (276)
..+|.+|+.|.+.+..+.+-.. ++.+.+.++-.|.|..||++
T Consensus 146 ~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~E 193 (248)
T COG1116 146 ATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDE 193 (248)
T ss_pred hcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH
Confidence 3789999999999887543322 55556778889999999984
No 165
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=29.66 E-value=76 Score=27.09 Aligned_cols=40 Identities=5% Similarity=0.315 Sum_probs=29.4
Q ss_pred cC--ceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 ED--PLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~--p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+ |.++++|.+.+.. +.+...+..+.+.|+.++++..+.+
T Consensus 104 ~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~ 150 (176)
T cd03238 104 SEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150 (176)
T ss_pred hCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 67 9999999987654 4566777776666777777777765
No 166
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=29.53 E-value=51 Score=34.32 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=52.0
Q ss_pred ceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccc-cceeeEEeCCCCccCccchHHhHHhHh
Q 023832 108 PLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRA-GIKVCAIKAPGFGENRKANMQDLAVLT 186 (276)
Q Consensus 108 p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g-~~~v~aVkaP~~g~~rk~~LedIA~~T 186 (276)
=+|+....+..+.+++-.+|+.+.+.|-+-|||+++..+.-.+-+..+.++. .+++..+ +.|+..+.||-.
T Consensus 205 D~i~~pe~~~~~~~q~~~~l~~~r~~Gln~viVigG~~~~~ga~i~ae~vk~~~~k~lv~------g~p~TilGdvqr-- 276 (666)
T KOG2440|consen 205 DTIFIPERPGEDPEQLCEILDSIRKRGLNIVIVIGGAIDNTGAPIIAEEVKERKLKVLVV------GVPKTILGDVQR-- 276 (666)
T ss_pred CEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCcccHHHHHHhhhheeee------cceeeecCcccc--
Confidence 4788888899999999999999999999999999954333333333333333 3455555 556666666543
Q ss_pred CCeEEec
Q 023832 187 GGDLITE 193 (276)
Q Consensus 187 Gg~vi~~ 193 (276)
|++..+-
T Consensus 277 gg~p~af 283 (666)
T KOG2440|consen 277 GGVPSAF 283 (666)
T ss_pred CCccccc
Confidence 4444433
No 167
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=29.52 E-value=66 Score=29.13 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=5.0
Q ss_pred HhCCCeEEEec
Q 023832 132 KRQRPLLIVAE 142 (276)
Q Consensus 132 ~~~~pLlIiae 142 (276)
..+.++||+-|
T Consensus 159 ~~~p~iLlLDE 169 (264)
T PRK13546 159 TVNPDILVIDE 169 (264)
T ss_pred hhCCCEEEEeC
Confidence 33444555444
No 168
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=29.40 E-value=70 Score=28.84 Aligned_cols=41 Identities=17% Similarity=0.236 Sum_probs=32.1
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..++..+.+.++.++++..+.+
T Consensus 155 ~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~ 200 (255)
T cd03236 155 ARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA 200 (255)
T ss_pred HhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 3789999999988765 3477778887777778888888865
No 169
>PRK00539 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=29.13 E-value=3e+02 Score=22.50 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=32.6
Q ss_pred eEEEEeCCcEEEEcC------CCCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 023832 211 KKVTISKDDTVILDG------AGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLA 260 (276)
Q Consensus 211 ~~v~v~~~~T~i~~g------~g~~~~i~~r~~~l~~~~~~~~s~~~~~~L~eRla 260 (276)
+-++|+++..+|+-. .=|.+..+.+.+..+++++...++.++.+.+..|.
T Consensus 67 Gf~ev~~n~v~Ilad~ae~~eeID~~~a~~a~erAe~~L~~~~~~~~~~~a~~~L~ 122 (133)
T PRK00539 67 GLLLIKKTEAKIFTENFVFADELDYDETLKRKKELERKIKHTKDTKLNIKIEQNLM 122 (133)
T ss_pred eEEEEECCEEEEEECeEEchhhCCHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHH
Confidence 344566666666533 23677888888889999987766666655554443
No 170
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=29.03 E-value=77 Score=29.78 Aligned_cols=41 Identities=15% Similarity=0.412 Sum_probs=33.3
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. .+++.+|..+.+. |..+|+|..|++
T Consensus 177 ~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~ 223 (330)
T PRK09473 177 LCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG 223 (330)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 3899999999987664 4688888887765 788999988886
No 171
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=29.00 E-value=74 Score=28.02 Aligned_cols=40 Identities=13% Similarity=0.317 Sum_probs=24.6
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+. |+.+++++.+.+
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~ 193 (241)
T PRK14250 148 NNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME 193 (241)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH
Confidence 677777777766543 3455556655543 666666666654
No 172
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=28.53 E-value=85 Score=27.22 Aligned_cols=40 Identities=20% Similarity=0.352 Sum_probs=27.6
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+. |..+++++.+.+
T Consensus 163 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 208 (228)
T PRK10584 163 GRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ 208 (228)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 688888888877654 4466667666543 666777777765
No 173
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.53 E-value=83 Score=27.15 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=26.3
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHH-hCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALK-RQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~-~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..++....+ .++.+++++.+.+
T Consensus 148 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~ 193 (220)
T cd03293 148 VDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID 193 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 678888888877654 346666666544 3666777666654
No 174
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=28.52 E-value=83 Score=27.06 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=28.2
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+++...+. ++.+++++.+.+
T Consensus 145 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~ 190 (213)
T TIGR01277 145 RPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190 (213)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 688888888876654 4477777776654 667777776654
No 175
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=28.50 E-value=1.5e+02 Score=26.85 Aligned_cols=58 Identities=22% Similarity=0.507 Sum_probs=41.1
Q ss_pred cCceEEEecccCCcHHH-----HHH-HHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCcc
Q 023832 106 EDPLILVHEKKISNLTA-----VVR-VLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGE 173 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~~~-----i~p-~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~ 173 (276)
-+|..|++|.++...+- +.. +|+.+.++|+-+++|..||++. .|+..++ .|=+|+=|+
T Consensus 149 ~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEA---lflatrL-------vvlsp~pgR 212 (259)
T COG4525 149 VEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEA---LFLATRL-------VVLSPGPGR 212 (259)
T ss_pred cCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHH---Hhhhhee-------EEecCCCce
Confidence 57999999998876532 222 3788889999999999999843 3444544 455666554
No 176
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=28.32 E-value=71 Score=30.54 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=32.9
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh--CCCeEEEecCccc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR--QRPLLIVAEDVES 146 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~--~~pLlIiae~i~~ 146 (276)
.+|.+|++|.+.+.. +++...|..+.+. |.++|++..|.++
T Consensus 154 ~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~e 201 (362)
T TIGR03258 154 IEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDD 201 (362)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHH
Confidence 799999999999875 4577778777765 6788988888763
No 177
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=28.24 E-value=78 Score=28.75 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=30.9
Q ss_pred CceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 107 DPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 107 ~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
+|.+|++|.+.+.. +.+..+|..+.+. +..+|+++.+.+
T Consensus 172 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~ 216 (272)
T PRK13547 172 PPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN 216 (272)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 89999999987664 4577788877765 778888888765
No 178
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=28.22 E-value=74 Score=31.45 Aligned_cols=40 Identities=15% Similarity=0.264 Sum_probs=27.4
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..++....+.|..+++++.|.+
T Consensus 413 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~ 457 (501)
T PRK11288 413 EDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP 457 (501)
T ss_pred cCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 678888888876553 4566666666666777777776664
No 179
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=28.16 E-value=1.7e+02 Score=22.89 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=44.3
Q ss_pred HHHHHHHhCCCeEEEec-CccchHHHHHHH-hcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEec
Q 023832 126 VLELALKRQRPLLIVAE-DVESEALATLIL-NKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITE 193 (276)
Q Consensus 126 ~le~i~~~~~pLlIiae-~i~~~aL~~Lv~-n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~ 193 (276)
.|......=.|++.|.. ++++..+..+-. -.-+..++|=.. ...++.|++..+.||-.||+.++..
T Consensus 10 ~LR~~ah~l~Pvv~IGk~Glt~~vi~ei~~aL~~hELIKvkv~--~~~~~~~~e~~~~i~~~~~ae~Vq~ 77 (97)
T PRK10343 10 HLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIA--TEDRETKTLIVEAIVRETGACNVQV 77 (97)
T ss_pred HHHHhcCCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEec--CCChhHHHHHHHHHHHHHCCEEEee
Confidence 34544444479999988 888888875542 122334455422 3456678899999999999998755
No 180
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=28.11 E-value=1.7e+02 Score=26.56 Aligned_cols=86 Identities=10% Similarity=0.150 Sum_probs=49.6
Q ss_pred CCchhHHHHHHHHHHhcccCccEEEecCCcceeeEEEEEeEEEeeeccCcccccccccceeeecCceEEEe-cccCCcHH
Q 023832 43 NGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVH-EKKISNLT 121 (276)
Q Consensus 43 ~~d~~ig~lia~Av~~vg~~G~I~ie~g~~~~~~l~v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~-d~~i~~~~ 121 (276)
.+|+++++-|++...+-|-+ +.... ...+.+|+|...|...-.++ .+-|.|.++ ++...+.+
T Consensus 84 ~g~~eLA~~i~~~~~~~gi~--~~~~~----------~~~~~lDHG~~vPL~~l~p~-----~~ipvV~vs~~~~~~~~~ 146 (268)
T cd07371 84 NVDVELAEACVEEGRKAGLV--TRMMR----------YPRFPIDTGTITALTLMRPG-----TDIPPVVISANNLYLSGE 146 (268)
T ss_pred CCCHHHHHHHHHHHHHCCCc--EEEec----------CCCCCCCchhHHHHHHhcCC-----CCCCeEEEEecCcCCCHH
Confidence 35888999888887755433 11000 13466899999994332222 355777776 55444555
Q ss_pred H---HHHHHH-HHHHhCCCeEEEec-Ccc
Q 023832 122 A---VVRVLE-LALKRQRPLLIVAE-DVE 145 (276)
Q Consensus 122 ~---i~p~le-~i~~~~~pLlIiae-~i~ 145 (276)
+ +-.+|. .+.+.++-.+||+- +.+
T Consensus 147 ~~~~lG~al~~~l~~~~~rv~iIgSG~ls 175 (268)
T cd07371 147 ETEGEMDLAGKATRDAGKRVAVLGSGGLS 175 (268)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecCcc
Confidence 4 444464 33455566777765 443
No 181
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=27.98 E-value=75 Score=28.57 Aligned_cols=39 Identities=8% Similarity=0.313 Sum_probs=20.0
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDV 144 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i 144 (276)
.+|.+|++|.+.+.. +.+..+|....+. |..+|+++.+.
T Consensus 166 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~ 210 (267)
T PRK15112 166 LRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL 210 (267)
T ss_pred hCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH
Confidence 466666666665443 2344445554432 44555555454
No 182
>PLN02775 Probable dihydrodipicolinate reductase
Probab=27.96 E-value=2.1e+02 Score=26.71 Aligned_cols=59 Identities=24% Similarity=0.244 Sum_probs=46.5
Q ss_pred CceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCc
Q 023832 107 DPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFG 172 (276)
Q Consensus 107 ~p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g 172 (276)
.|-..+.|+ +.++-....++.+.+.|.|+||=..+++++-+..+... -.+.+|-+|-|.
T Consensus 79 ~~~~VvIDF--T~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~-----~~i~vv~apNfS 137 (286)
T PLN02775 79 YPNLIVVDY--TLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEE-----SGVYAVIAPQMG 137 (286)
T ss_pred CCCEEEEEC--CChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhc-----CCccEEEECccc
Confidence 477667775 57788999999999999999999999999977766542 235678888885
No 183
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=27.96 E-value=76 Score=28.89 Aligned_cols=42 Identities=19% Similarity=0.417 Sum_probs=29.0
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCccc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVES 146 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~~ 146 (276)
+.+|.+|++|.+.+.. +.+..+|....+. |+-+|+++.+.+.
T Consensus 157 ~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~ 204 (283)
T PRK13636 157 VMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI 204 (283)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 3788888888876654 3466777766654 6677777767663
No 184
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=27.94 E-value=1.3e+02 Score=28.92 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=7.8
Q ss_pred CHHHHHHHHHHHHH
Q 023832 228 DKKSIEERCEQIRS 241 (276)
Q Consensus 228 ~~~~i~~r~~~l~~ 241 (276)
+|+....=++++|.
T Consensus 252 dP~efk~mv~~ir~ 265 (347)
T COG2089 252 DPDEFKEMVDAIRQ 265 (347)
T ss_pred CHHHHHHHHHHHHH
Confidence 45555555555554
No 185
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=27.80 E-value=74 Score=30.10 Aligned_cols=40 Identities=20% Similarity=0.391 Sum_probs=32.2
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+|..+.+. |+.+++++.+.+
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~ 193 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ 193 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 699999999998775 4577778877665 788888888876
No 186
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=27.78 E-value=80 Score=27.42 Aligned_cols=40 Identities=15% Similarity=0.312 Sum_probs=28.0
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+. ++.++++..+.+
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 193 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD 193 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH
Confidence 688888888877654 4567777776653 667777766664
No 187
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=27.74 E-value=77 Score=28.99 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=30.3
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. ..++.+|..+.+. |..+++++.|.+
T Consensus 162 ~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~ 207 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME 207 (290)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 789999999987654 4577778777654 777888877776
No 188
>PRK13446 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=27.65 E-value=3.4e+02 Score=22.12 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 023832 226 AGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAK 261 (276)
Q Consensus 226 ~g~~~~i~~r~~~l~~~~~~~~s~~~~~~L~eRla~ 261 (276)
.=|.+..+...+..+++++...++.++.+.+.+|.|
T Consensus 88 ~iD~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~ 123 (136)
T PRK13446 88 EIDVERARAALERAEQRLKKLTPEDDSARAEAALER 123 (136)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 447889999999999999887777776666555443
No 189
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=27.56 E-value=79 Score=29.59 Aligned_cols=41 Identities=15% Similarity=0.437 Sum_probs=32.7
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHH-hCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALK-RQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~-~~~pLlIiae~i~ 145 (276)
+.+|.+|++|.+.+.. .+++.+|..+.+ .|..+|+|+.|.+
T Consensus 174 ~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~ 220 (330)
T PRK15093 174 ANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ 220 (330)
T ss_pred HCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 3789999999988764 468888888776 4788899988864
No 190
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=27.53 E-value=3.7e+02 Score=23.45 Aligned_cols=55 Identities=13% Similarity=0.205 Sum_probs=43.1
Q ss_pred eecCceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEecC-ccchHHHHHHHhccc
Q 023832 104 ELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAED-VESEALATLILNKLR 158 (276)
Q Consensus 104 ~l~~p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae~-i~~~aL~~Lv~n~~~ 158 (276)
.+++-.|++.|--+.+-..+..+++.+.+.|.+-++++-= ..++++..+..+.-.
T Consensus 119 ~i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~v~~ll~~~~gl~~l~~~~p~ 174 (207)
T TIGR01091 119 DIDERTVIVLDPMLATGGTMIAALDLLKKRGAKKIKVLSIVAAPEGIEAVEKAHPD 174 (207)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHHHHcCCCEEEEEEEecCHHHHHHHHHHCCC
Confidence 4567789999999999999999999999999666665553 377888887765443
No 191
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=27.27 E-value=74 Score=29.29 Aligned_cols=41 Identities=22% Similarity=0.415 Sum_probs=32.2
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|....+.|..++++..+.+
T Consensus 151 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~ 196 (303)
T TIGR01288 151 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME 196 (303)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 3799999999988764 4577778877777778888877775
No 192
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=27.24 E-value=77 Score=28.61 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=22.9
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+|....+.++.+++++.+.+
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~ 206 (280)
T PRK13649 162 MEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD 206 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 567777777766543 3355555555444555566555543
No 193
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=27.19 E-value=1.6e+02 Score=23.77 Aligned_cols=20 Identities=35% Similarity=0.596 Sum_probs=14.5
Q ss_pred CCCeEEEecCccchHHHHHH
Q 023832 134 QRPLLIVAEDVESEALATLI 153 (276)
Q Consensus 134 ~~pLlIiae~i~~~aL~~Lv 153 (276)
..-|+|||+|++++-+-..+
T Consensus 43 ~a~LVviA~Dv~P~~~~~~l 62 (116)
T COG1358 43 KAKLVVIAEDVSPEELVKHL 62 (116)
T ss_pred CCcEEEEecCCCHHHHHHHH
Confidence 36899999999955554443
No 194
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=27.12 E-value=82 Score=27.81 Aligned_cols=40 Identities=15% Similarity=0.324 Sum_probs=27.1
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+|....+. |+.+++++.+.+
T Consensus 170 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~ 215 (255)
T PRK11300 170 TQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK 215 (255)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence 788888888877654 3466666666554 666666666654
No 195
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.02 E-value=89 Score=27.17 Aligned_cols=41 Identities=15% Similarity=0.383 Sum_probs=29.1
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..++....+. |+-++++..+.+
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~ 202 (233)
T cd03258 156 ANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME 202 (233)
T ss_pred hcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 4789999999987664 3466677766554 677777777764
No 196
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=26.96 E-value=80 Score=27.20 Aligned_cols=41 Identities=17% Similarity=0.404 Sum_probs=28.2
Q ss_pred ecCceEEEecccCCcH-----HHHHH--HHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVR--VLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p--~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.++. +++...+.+..+++++.+.+
T Consensus 156 ~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~ 203 (218)
T cd03290 156 YQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ 203 (218)
T ss_pred hhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH
Confidence 4789999999987654 33455 55565555677777777765
No 197
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=26.93 E-value=1.2e+02 Score=26.75 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=40.5
Q ss_pred EEEeeeccCcccccccccceeeecCceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccce
Q 023832 83 MKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIK 162 (276)
Q Consensus 83 ~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~ 162 (276)
+.+-.|..||||+. ....+.+|..+ +.+...+-...+....-+|++-+..+..+++.+..++. ++
T Consensus 28 F~L~SG~~S~~y~D----~~~i~~~p~~l---------~~i~~~l~~~~~~~~~d~IvG~~~~Gi~~A~~vA~~l~--~p 92 (206)
T PRK13809 28 FILASGEETPIYVD----MRLVISSPEVL---------QTIATLIWRLRPSFNSSLLCGVPYTALTLATSISLKYN--IP 92 (206)
T ss_pred EEECCcCCCCEEEE----ChhhccCHHHH---------HHHHHHHHHHhccCCCCEEEEecCccHHHHHHHHHHhC--CC
Confidence 66788999999872 22233333221 12222222212222356788889999999988877653 45
Q ss_pred eeEEeC
Q 023832 163 VCAIKA 168 (276)
Q Consensus 163 v~aVka 168 (276)
.+-++-
T Consensus 93 ~~~~RK 98 (206)
T PRK13809 93 MVLRRK 98 (206)
T ss_pred EEEEeC
Confidence 555554
No 198
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=26.91 E-value=88 Score=27.94 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=28.6
Q ss_pred CceEEEecccCCcH-----HHHHHHHHHHH-HhCCCeEEEecCcc
Q 023832 107 DPLILVHEKKISNL-----TAVVRVLELAL-KRQRPLLIVAEDVE 145 (276)
Q Consensus 107 ~p~Ill~d~~i~~~-----~~i~p~le~i~-~~~~pLlIiae~i~ 145 (276)
+|.++++|.+.+.. +.+..+|.... +.|..+++++.+.+
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 202 (258)
T PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN 202 (258)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 78999999987664 34677777766 55677777777765
No 199
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=26.91 E-value=76 Score=31.24 Aligned_cols=40 Identities=13% Similarity=0.380 Sum_probs=27.7
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.||++|.+.+.. +.+..+++...+.|..+++++.|.+
T Consensus 408 ~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~ 452 (491)
T PRK10982 408 TQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP 452 (491)
T ss_pred cCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH
Confidence 478888888876543 4566667666666777777777765
No 200
>COG0355 AtpC F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) [Energy production and conversion]
Probab=26.89 E-value=3e+02 Score=22.63 Aligned_cols=37 Identities=30% Similarity=0.352 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCChhHH----HHHHHHHHhhc
Q 023832 227 GDKKSIEERCEQIRSAIENSTSDYDK----EKLQERLAKLS 263 (276)
Q Consensus 227 g~~~~i~~r~~~l~~~~~~~~s~~~~----~~L~eRla~L~ 263 (276)
=|.+.++.+.+..++.++.+.++.+. .+|...+++|.
T Consensus 90 id~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~al~~L~ 130 (135)
T COG0355 90 IDEARAEEAKERAEKELESAKDDKDYRRAEAALARALARLR 130 (135)
T ss_pred CCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhh
Confidence 47799999999999999887665543 44555666664
No 201
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=26.89 E-value=76 Score=30.31 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=31.5
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+|..+.+. |..++++..|.+
T Consensus 150 ~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~ 195 (369)
T PRK11000 150 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195 (369)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence 799999999998775 3467777777654 778888887775
No 202
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=26.84 E-value=80 Score=28.66 Aligned_cols=41 Identities=15% Similarity=0.304 Sum_probs=31.8
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
+.+|.+|++|.+.+.. +.+..++..+.+. |+.+++++.+.+
T Consensus 156 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~ 202 (279)
T PRK13650 156 AMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD 202 (279)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 4889999999987653 4577888877664 778888888876
No 203
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=26.66 E-value=79 Score=29.59 Aligned_cols=40 Identities=15% Similarity=0.370 Sum_probs=29.2
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+|....+.|+.+++++.+.+
T Consensus 193 ~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~ 237 (320)
T PRK13631 193 IQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME 237 (320)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 789999999887654 3466777666556777788777766
No 204
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=26.65 E-value=97 Score=24.75 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEEec-CccchHHHHHHHh
Q 023832 120 LTAVVRVLELALKRQRPLLIVAE-DVESEALATLILN 155 (276)
Q Consensus 120 ~~~i~p~le~i~~~~~pLlIiae-~i~~~aL~~Lv~n 155 (276)
++.+..-++.+.+++.|++|..| +.....++-.+..
T Consensus 7 ~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~ 43 (138)
T PF14532_consen 7 MRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHR 43 (138)
T ss_dssp HHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHH
T ss_pred HHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHh
Confidence 45677778888899999999999 6666655544433
No 205
>PRK13881 conjugal transfer protein TrbI; Provisional
Probab=26.65 E-value=92 Score=31.10 Aligned_cols=40 Identities=25% Similarity=0.378 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcC
Q 023832 225 GAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSG 264 (276)
Q Consensus 225 g~g~~~~i~~r~~~l~~~~~~~~s~~~~~~L~eRla~L~g 264 (276)
.....++.-+|++.+|.+++...++.=...+++||+.|.|
T Consensus 177 ~~~~~~e~la~~a~~~~~~~~~~~~d~~~~y~~~l~~~~~ 216 (472)
T PRK13881 177 TPQTRDEMLARIAAVRQQIDAQRSNDPTAAYQARLAQLRG 216 (472)
T ss_pred CCCchHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHh
Confidence 3457889999999999999998887778899999999986
No 206
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=26.54 E-value=82 Score=29.42 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=32.5
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
..+|.++++|.+.+.. +.+...|..+.+. |..+++++.|.+
T Consensus 116 ~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~ 162 (325)
T TIGR01187 116 VFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE 162 (325)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3799999999998775 3477777777654 788999888876
No 207
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=26.52 E-value=2e+02 Score=23.42 Aligned_cols=50 Identities=20% Similarity=0.377 Sum_probs=28.6
Q ss_pred eEEEecCccchHHHHHHHhcccccceeeEEeCCCCc-cCccchHHhHHhHhCCeEE
Q 023832 137 LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFG-ENRKANMQDLAVLTGGDLI 191 (276)
Q Consensus 137 LlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g-~~rk~~LedIA~~TGg~vi 191 (276)
++++.++-+..--..+. .....++|-.| +|| +...+.|+.||-.|||+..
T Consensus 102 iillTDG~~~~~~~~~~--~~~~~v~v~~i---gig~~~~~~~l~~iA~~t~G~~~ 152 (155)
T cd01466 102 IMLLSDGQDNHGAVVLR--ADNAPIPIHTF---GLGASHDPALLAFIAEITGGTFS 152 (155)
T ss_pred EEEEcCCCCCcchhhhc--ccCCCceEEEE---ecCCCCCHHHHHHHHhccCceEE
Confidence 66777654322111111 11224444444 567 4566889999999999864
No 208
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=26.29 E-value=78 Score=29.10 Aligned_cols=41 Identities=15% Similarity=0.272 Sum_probs=31.9
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.+|++|.+.+.. +.+..+|....+.|+.++++..+.+
T Consensus 140 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~ 185 (302)
T TIGR01188 140 IHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYME 185 (302)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 4799999999988764 4577778887777777777777765
No 209
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=26.22 E-value=83 Score=28.48 Aligned_cols=41 Identities=22% Similarity=0.403 Sum_probs=29.9
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCccc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVES 146 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~~ 146 (276)
.+|.++++|.+.+.. +.+..+|..+.+. |..+|++..+.+.
T Consensus 157 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~ 203 (277)
T PRK13642 157 LRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE 203 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 788999999877654 4577777777664 7777777777764
No 210
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=26.07 E-value=93 Score=29.15 Aligned_cols=40 Identities=15% Similarity=0.368 Sum_probs=32.6
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHH-hCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALK-RQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~-~~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. .+++.+|..+.+ .|.-+|+|..|++
T Consensus 170 ~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~ 215 (326)
T PRK11022 170 CRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA 215 (326)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 799999999987765 458888888765 4788999988876
No 211
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=26.01 E-value=84 Score=29.91 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=32.2
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCccc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVES 146 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~~ 146 (276)
.+|.+|++|.+.+.. +++...|..+.+. |.+.|++..|.++
T Consensus 153 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e 199 (351)
T PRK11432 153 LKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSE 199 (351)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 799999999999875 3466777777654 7889998887753
No 212
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=26.00 E-value=89 Score=29.33 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=32.1
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. ++++.+|..+.+. |..+|+|+.|++
T Consensus 171 ~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~ 216 (327)
T PRK11308 171 LDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS 216 (327)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 799999999987664 4688888877664 788899988875
No 213
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=25.96 E-value=83 Score=27.81 Aligned_cols=39 Identities=15% Similarity=0.339 Sum_probs=26.4
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|..+.+ ++.+|+++.+.+
T Consensus 166 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~ 209 (251)
T PRK14244 166 VKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK 209 (251)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH
Confidence 688888888876643 446666666543 667777777665
No 214
>PRK06683 hypothetical protein; Provisional
Probab=25.79 E-value=2.4e+02 Score=21.12 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=19.1
Q ss_pred HHHHHHhCCCeEEEecCccchHHHHHH
Q 023832 127 LELALKRQRPLLIVAEDVESEALATLI 153 (276)
Q Consensus 127 le~i~~~~~pLlIiae~i~~~aL~~Lv 153 (276)
++.+.+...-|+|||+|.++...+-+.
T Consensus 20 ~kaik~gkaklViiA~Da~~~~~~~i~ 46 (82)
T PRK06683 20 LEAIKNGIVKEVVIAEDADMRLTHVII 46 (82)
T ss_pred HHHHHcCCeeEEEEECCCCHHHHHHHH
Confidence 344444556899999999988766554
No 215
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=25.79 E-value=1.3e+02 Score=23.83 Aligned_cols=69 Identities=16% Similarity=0.276 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhC---CCeEEEecCcc-chHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEec
Q 023832 123 VVRVLELALKRQ---RPLLIVAEDVE-SEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITE 193 (276)
Q Consensus 123 i~p~le~i~~~~---~pLlIiae~i~-~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~ 193 (276)
+..+.+.....+ +-+++|+++-+ +.....+-.-+ +..+++.+|-...-... .+.|+.||..|||+++.-
T Consensus 86 l~~a~~~~~~~~~~~~~iv~iTDG~~~~~~~~~~~~~~-~~~i~i~~v~~~~~~~~-~~~l~~la~~tgG~~~~~ 158 (172)
T PF13519_consen 86 LQEAAKMLASSDNRRRAIVLITDGEDNSSDIEAAKALK-QQGITIYTVGIGSDSDA-NEFLQRLAEATGGRYFHV 158 (172)
T ss_dssp HHHHHHHHHC-SSEEEEEEEEES-TTHCHHHHHHHHHH-CTTEEEEEEEES-TT-E-HHHHHHHHHHTEEEEEEE
T ss_pred HHHHHHHHHhCCCCceEEEEecCCCCCcchhHHHHHHH-HcCCeEEEEEECCCccH-HHHHHHHHHhcCCEEEEe
Confidence 444444444332 45677787543 22222222112 23355655543332222 368999999999998875
No 216
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=25.75 E-value=93 Score=27.84 Aligned_cols=40 Identities=18% Similarity=0.395 Sum_probs=20.8
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+. ++.+++++.+.+
T Consensus 137 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~ 182 (251)
T PRK09544 137 NRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH 182 (251)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 566666666655443 2344445544433 455555555543
No 217
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.68 E-value=88 Score=28.30 Aligned_cols=40 Identities=18% Similarity=0.465 Sum_probs=28.3
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+|..+.+.|..+|++..+.+
T Consensus 155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~ 199 (274)
T PRK13647 155 MDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD 199 (274)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 788888888876553 4577777776655667777766665
No 218
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=25.67 E-value=99 Score=26.97 Aligned_cols=41 Identities=22% Similarity=0.394 Sum_probs=23.9
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|....+. |+.+++++.+.+
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~ 191 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE 191 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 3677777777765543 3355666655443 555666655554
No 219
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=25.48 E-value=2.1e+02 Score=26.43 Aligned_cols=63 Identities=21% Similarity=0.310 Sum_probs=44.8
Q ss_pred cCceEEE-ecccCCcHHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHh
Q 023832 106 EDPLILV-HEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAV 184 (276)
Q Consensus 106 ~~p~Ill-~d~~i~~~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~ 184 (276)
-+++||+ ....=+...+.+|+++.+..+. |.+=.+.||++ |......||..|-
T Consensus 143 ~~~RILv~~s~s~d~~~QYi~~MN~iFaAq---------------------k~~v~IDv~~L-----~~~~s~fLqQa~d 196 (276)
T PF03850_consen 143 LKSRILVIVSGSPDSSSQYIPLMNCIFAAQ---------------------KQKVPIDVCKL-----GGKDSTFLQQASD 196 (276)
T ss_pred cCccEEEEEecCCCccHHHHHHHHHHHHHh---------------------cCCceeEEEEe-----cCCchHHHHHHHH
Confidence 3478888 4544445677888888765443 44444578888 5567789999999
Q ss_pred HhCCeEEecC
Q 023832 185 LTGGDLITEE 194 (276)
Q Consensus 185 ~TGg~vi~~~ 194 (276)
+|||..+.-.
T Consensus 197 ~T~G~y~~~~ 206 (276)
T PF03850_consen 197 ITGGIYLKVS 206 (276)
T ss_pred HhCceeeccC
Confidence 9999988653
No 220
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=25.45 E-value=93 Score=27.72 Aligned_cols=41 Identities=12% Similarity=0.290 Sum_probs=28.2
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|+...+. |..++++..+.+
T Consensus 168 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~ 214 (262)
T PRK09984 168 MQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD 214 (262)
T ss_pred hcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3688888888877654 4567777776643 666777766665
No 221
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=25.43 E-value=96 Score=29.20 Aligned_cols=41 Identities=22% Similarity=0.481 Sum_probs=32.9
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
..+|.+|++|.+.+.. .+++.+|..+.+. |..+|+|..|.+
T Consensus 177 ~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~ 223 (331)
T PRK15079 177 ILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA 223 (331)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3899999999988664 4688888887664 788899988876
No 222
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=25.43 E-value=84 Score=31.10 Aligned_cols=40 Identities=8% Similarity=0.372 Sum_probs=22.5
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+|....+.|+.+++++.|.+
T Consensus 422 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~ 466 (506)
T PRK13549 422 LNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP 466 (506)
T ss_pred hCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 466666666665443 3455555555555555555555554
No 223
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=25.43 E-value=89 Score=30.08 Aligned_cols=41 Identities=20% Similarity=0.376 Sum_probs=32.8
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
+.+|.+|++|.+.++. +.+...|..+.+. |.+.+++..|.+
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ 206 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE 206 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3799999999999876 4577888887764 788888887765
No 224
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.36 E-value=97 Score=27.07 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=22.9
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.++++|.+-+.. +.+..+|....+. ++-++|++.+.+
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~ 192 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE 192 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 667777777665543 3455555555543 555666655553
No 225
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=25.35 E-value=88 Score=29.77 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=32.4
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
+.+|.+|++|.+.+.. +++...|..+.+. |..++++..|.+
T Consensus 152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ 198 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE 198 (353)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3899999999998775 4577788877665 778888887775
No 226
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=25.34 E-value=76 Score=32.03 Aligned_cols=49 Identities=14% Similarity=0.208 Sum_probs=39.6
Q ss_pred ceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEecCc----cchHHHHHHHhc
Q 023832 108 PLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDV----ESEALATLILNK 156 (276)
Q Consensus 108 p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae~i----~~~aL~~Lv~n~ 156 (276)
+++.-.+.+..+..++..+++.++.+++||+|...++ ..++|..|+.++
T Consensus 204 ~rv~~~rR~~Pd~~eL~~A~~lik~ak~PlIvaGGGv~YS~A~~~L~af~E~~ 256 (617)
T COG3962 204 KRVWRIRRPPPDERELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFAETH 256 (617)
T ss_pred hhhhhccCCCCCHHHHHHHHHHHHhcCCCEEEecCceeechHHHHHHHHHHhc
Confidence 5666677778889999999999999999999887776 457777777653
No 227
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=25.31 E-value=94 Score=27.49 Aligned_cols=40 Identities=18% Similarity=0.347 Sum_probs=28.5
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. ..+..+|..+.+. |..++++..+.+
T Consensus 163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~ 208 (252)
T TIGR03005 163 MRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG 208 (252)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 688999999877654 3566777776654 667777777765
No 228
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.30 E-value=92 Score=28.45 Aligned_cols=40 Identities=15% Similarity=0.351 Sum_probs=25.7
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. ..+..+|+.+.+.|+-+|+++.|.+
T Consensus 161 ~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~ 205 (288)
T PRK13643 161 MEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD 205 (288)
T ss_pred hCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 677888888766543 3466666666555666666666654
No 229
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=25.28 E-value=89 Score=27.34 Aligned_cols=40 Identities=18% Similarity=0.471 Sum_probs=26.8
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|....+ ++.+++++.+.+
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~ 203 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME 203 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH
Confidence 3788888888887654 346666666554 556777666654
No 230
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.27 E-value=73 Score=27.74 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=23.9
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+ |..++++..+.+
T Consensus 154 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~ 197 (236)
T cd03253 154 KNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS 197 (236)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH
Confidence 677788888776543 345566665554 555566555554
No 231
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=25.27 E-value=1e+02 Score=26.56 Aligned_cols=41 Identities=20% Similarity=0.393 Sum_probs=31.4
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHH-hCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALK-RQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~-~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|+...+ .++.+++++.+.+
T Consensus 157 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~ 203 (220)
T TIGR02982 157 VHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR 203 (220)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3799999999987654 457888887776 4778888888764
No 232
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.23 E-value=1.4e+02 Score=25.55 Aligned_cols=6 Identities=50% Similarity=0.573 Sum_probs=3.5
Q ss_pred CccEEE
Q 023832 62 EGVITI 67 (276)
Q Consensus 62 ~G~I~i 67 (276)
.|.|.+
T Consensus 64 ~G~i~i 69 (202)
T cd03233 64 EGDIHY 69 (202)
T ss_pred ceEEEE
Confidence 466655
No 233
>PRK06893 DNA replication initiation factor; Validated
Probab=25.13 E-value=74 Score=28.04 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=50.2
Q ss_pred eecCceEEEecccCCc-------HHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccc---eeeEEeCCCCcc
Q 023832 104 ELEDPLILVHEKKISN-------LTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGI---KVCAIKAPGFGE 173 (276)
Q Consensus 104 ~l~~p~Ill~d~~i~~-------~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~---~v~aVkaP~~g~ 173 (276)
.+.++.+|+.|. +.. .+.+..+++...+.|++++|++.+..+..++.+ ...++..+ .++-++.|.. +
T Consensus 88 ~~~~~dlLilDD-i~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~-~~~L~sRl~~g~~~~l~~pd~-e 164 (229)
T PRK06893 88 NLEQQDLVCLDD-LQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIK-LPDLASRLTWGEIYQLNDLTD-E 164 (229)
T ss_pred hcccCCEEEEeC-hhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHcccc-chhHHHHHhcCCeeeCCCCCH-H
Confidence 356778888887 322 135778888888878888888888777766532 12233323 3667888874 4
Q ss_pred CccchHHhHHh
Q 023832 174 NRKANMQDLAV 184 (276)
Q Consensus 174 ~rk~~LedIA~ 184 (276)
.|...|+..|.
T Consensus 165 ~~~~iL~~~a~ 175 (229)
T PRK06893 165 QKIIVLQRNAY 175 (229)
T ss_pred HHHHHHHHHHH
Confidence 55666776665
No 234
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.05 E-value=95 Score=27.26 Aligned_cols=41 Identities=15% Similarity=0.371 Sum_probs=28.1
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|....+. |+-+++++.+.+
T Consensus 151 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~ 197 (242)
T cd03295 151 AADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID 197 (242)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 4788889998887653 4466777776654 666667666654
No 235
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=25.03 E-value=91 Score=30.87 Aligned_cols=40 Identities=10% Similarity=0.328 Sum_probs=24.9
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+|....+.|..+++++.|.+
T Consensus 426 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~ 470 (510)
T PRK09700 426 CCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP 470 (510)
T ss_pred cCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 567777777766543 3466666665555666666666654
No 236
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=25.01 E-value=86 Score=30.53 Aligned_cols=41 Identities=7% Similarity=0.225 Sum_probs=32.4
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCccc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVES 146 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~~ 146 (276)
.+|.+|++|.+.+.. .+++.+|....+.|.-+|++..|++.
T Consensus 156 ~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~ 201 (402)
T PRK09536 156 QATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDL 201 (402)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 899999999988764 46888888887767777777777763
No 237
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=24.98 E-value=93 Score=28.85 Aligned_cols=40 Identities=18% Similarity=0.462 Sum_probs=30.0
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.++.+|..+.+.|..++++..|.+
T Consensus 182 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~ 226 (305)
T PRK13651 182 MEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD 226 (305)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH
Confidence 789999999987654 4577777777666777778777765
No 238
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=24.97 E-value=89 Score=28.28 Aligned_cols=41 Identities=17% Similarity=0.336 Sum_probs=30.5
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. ..+..+|....+.|.-+|+++.+.+
T Consensus 152 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~ 197 (274)
T PRK13644 152 TMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE 197 (274)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 3789999999987654 4577777776666777777777766
No 239
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=24.77 E-value=1e+02 Score=27.32 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=27.7
Q ss_pred CceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 107 DPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 107 ~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+|.++++|.+.+.. +.+..+|....+.+..+|+++.+.+
T Consensus 151 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~ 194 (248)
T PRK03695 151 AGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN 194 (248)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 56889998887654 4577777776666667777777765
No 240
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=24.63 E-value=92 Score=27.47 Aligned_cols=39 Identities=18% Similarity=0.367 Sum_probs=24.1
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+ ++.+++++.+.+
T Consensus 163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~ 206 (250)
T PRK14240 163 VEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ 206 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH
Confidence 677788887776553 345566666533 556666666654
No 241
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.61 E-value=96 Score=27.61 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=23.8
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|+...+ ++.+|+++.+.+
T Consensus 171 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~ 214 (258)
T PRK14268 171 VKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ 214 (258)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH
Confidence 677777777776543 335565665543 556666666654
No 242
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=24.55 E-value=93 Score=28.36 Aligned_cols=40 Identities=15% Similarity=0.347 Sum_probs=26.5
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+|....+.|.-+|+++.+.+
T Consensus 162 ~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~ 206 (287)
T PRK13641 162 YEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD 206 (287)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 678888888876553 4466667766555666666666654
No 243
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=24.53 E-value=1.2e+02 Score=24.30 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcC
Q 023832 229 KKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSG 264 (276)
Q Consensus 229 ~~~i~~r~~~l~~~~~~~~s~~~~~~L~eRla~L~g 264 (276)
.+.++.|++++-..+.-. +..|-+.|++||++|.-
T Consensus 76 e~~~~~~v~~~L~~lg~~-tk~ev~~L~~RI~~Le~ 110 (118)
T TIGR01837 76 EKAFDERVEQALNRLNIP-SREEIEALSAKIEQLAV 110 (118)
T ss_pred HHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHH
Confidence 457778887777777554 56788899999988853
No 244
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.52 E-value=93 Score=27.55 Aligned_cols=39 Identities=13% Similarity=0.296 Sum_probs=27.1
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+ +..+++++.+.+
T Consensus 167 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~ 210 (254)
T PRK14273 167 IEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ 210 (254)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 788899998877654 446677777643 566777766665
No 245
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=24.41 E-value=1e+02 Score=28.10 Aligned_cols=28 Identities=32% Similarity=0.546 Sum_probs=23.1
Q ss_pred CcHHHHHHHHHHHHHhC-CCeEEEecCcc
Q 023832 118 SNLTAVVRVLELALKRQ-RPLLIVAEDVE 145 (276)
Q Consensus 118 ~~~~~i~p~le~i~~~~-~pLlIiae~i~ 145 (276)
+++++|.+.+++..+.+ +|-+|||+-+-
T Consensus 214 ~d~~~i~~a~~~~~~~~~rP~~IIa~Tvk 242 (243)
T COG3959 214 HDIEEIVEALEKAKGSKGRPTVIIAKTVK 242 (243)
T ss_pred cCHHHHHHHHHhhhccCCCCeEEEEeccc
Confidence 55788999999998855 99999998653
No 246
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=24.41 E-value=47 Score=28.03 Aligned_cols=49 Identities=29% Similarity=0.494 Sum_probs=30.8
Q ss_pred eEEEeeeccCcccccccccceeeecCceEEEecccCCcHHHHHHHHHHHHHhCCCe
Q 023832 82 GMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPL 137 (276)
Q Consensus 82 G~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i~~~~~i~p~le~i~~~~~pL 137 (276)
|+.+|+ ...||+- ..-.++.+++|||= .-..+.-++.+||.+++.-.++
T Consensus 4 G~sYd~-LFg~Yl~--d~~~~I~ieDPYir----~~hQi~Nl~~F~El~vk~~~~~ 52 (148)
T cd02685 4 GFSYDR-LFGPYLD--DGVTEITVEDPYIR----NFHQIRNFLRFCELVVKPPCEL 52 (148)
T ss_pred cccHHH-HHHHHHh--CCceEEEEeCcccc----chHHHHHHHHHHHHHhcCccce
Confidence 555554 3468872 22335677888863 2334667888999999755555
No 247
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.34 E-value=1e+02 Score=27.81 Aligned_cols=13 Identities=38% Similarity=0.554 Sum_probs=6.5
Q ss_pred cCceEEEecccCC
Q 023832 106 EDPLILVHEKKIS 118 (276)
Q Consensus 106 ~~p~Ill~d~~i~ 118 (276)
.+|.+|++|.+.+
T Consensus 177 ~~p~illLDEPt~ 189 (269)
T cd03294 177 VDPDILLMDEAFS 189 (269)
T ss_pred cCCCEEEEcCCCc
Confidence 4455555555443
No 248
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=24.29 E-value=75 Score=27.73 Aligned_cols=39 Identities=26% Similarity=0.459 Sum_probs=25.8
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+ |+.+++++.+.+
T Consensus 155 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~ 198 (237)
T cd03252 155 HNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS 198 (237)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH
Confidence 678888888876654 346666666543 666666666665
No 249
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=24.02 E-value=2.2e+02 Score=21.98 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=14.2
Q ss_pred HHHHHhCCCeEEEecCccchHHH
Q 023832 128 ELALKRQRPLLIVAEDVESEALA 150 (276)
Q Consensus 128 e~i~~~~~pLlIiae~i~~~aL~ 150 (276)
+.+.+....|||+|+|+++.-..
T Consensus 26 kai~~gkaklViiA~D~~~~~~~ 48 (99)
T PRK01018 26 KAIKLGKAKLVIVASNCPKDIKE 48 (99)
T ss_pred HHHHcCCceEEEEeCCCCHHHHH
Confidence 33444556788888887654433
No 250
>COG2450 Uncharacterized conserved protein [Function unknown]
Probab=23.99 E-value=2.4e+02 Score=23.11 Aligned_cols=71 Identities=18% Similarity=0.274 Sum_probs=43.6
Q ss_pred cCceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEec--Ccc-chHHHHHHHhcccccceeeEEeCCCCccCccchHHhH
Q 023832 106 EDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAE--DVE-SEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDL 182 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae--~i~-~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedI 182 (276)
+.+.+.+-=+.+++..|+..+.+.+-+ | ++|| |+ .+. ++-+..=+..++| +.+.+.-.||
T Consensus 37 e~~~~~Ikvaei~~~~Dl~~~~~eiy~-G-NIvI-aDit~l~~d~~~~~~V~e~lr--------------~~a~~~ggdi 99 (124)
T COG2450 37 EEAKVYIKVAEISSYEDLEEAKREIYA-G-NIVI-ADITPLERDDDLFERVIEELR--------------DTAEEVGGDI 99 (124)
T ss_pred CCCeEEEEEEEeCCHHHHHHHHHHHhc-C-CEEE-EEcCCcccChhHHHHHHHHHH--------------HHHHHhCchh
Confidence 677888888889999999999998765 4 3443 43 444 4444444444443 3334444555
Q ss_pred HhHhCCeEEec
Q 023832 183 AVLTGGDLITE 193 (276)
Q Consensus 183 A~~TGg~vi~~ 193 (276)
|.+++-.++-.
T Consensus 100 ~~l~~n~viIT 110 (124)
T COG2450 100 AKLGDNVVIIT 110 (124)
T ss_pred hhhcCCEEEEC
Confidence 55555555544
No 251
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.95 E-value=91 Score=28.37 Aligned_cols=40 Identities=18% Similarity=0.339 Sum_probs=26.4
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+|....+. ++.+++++.+.+
T Consensus 167 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~ 212 (289)
T PRK13645 167 MDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD 212 (289)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 678888888876554 3466666666553 666666666654
No 252
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.77 E-value=1e+02 Score=28.01 Aligned_cols=40 Identities=23% Similarity=0.469 Sum_probs=29.0
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHH-hCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALK-RQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~-~~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. ..+..++..+.+ .|..+|+++.+.+
T Consensus 162 ~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~ 207 (286)
T PRK13646 162 MNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN 207 (286)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 788999999887654 346677776654 4677788777766
No 253
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.76 E-value=99 Score=27.24 Aligned_cols=39 Identities=15% Similarity=0.235 Sum_probs=25.8
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|+...+ ++.+++++.+.+
T Consensus 163 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~ 206 (250)
T PRK14247 163 FQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ 206 (250)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 678888888876554 446666666543 566677666654
No 254
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=23.73 E-value=1.1e+02 Score=26.90 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=19.9
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+. ++.+++++.+.+
T Consensus 170 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~ 215 (236)
T cd03267 170 HEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK 215 (236)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence 566666666655443 2344445444332 444455444443
No 255
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.73 E-value=1e+02 Score=27.48 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=24.1
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHH-hCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALK-RQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~-~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|..+.+ .++.+++++.+.+
T Consensus 167 ~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~ 212 (261)
T PRK14258 167 VKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH 212 (261)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 677888888776553 345555555443 3556666666654
No 256
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=23.72 E-value=3.8e+02 Score=25.31 Aligned_cols=140 Identities=22% Similarity=0.347 Sum_probs=78.4
Q ss_pred ecCceEEEecccCCcH------HHHHHHHHHHHHh-CCCeEEEec--CccchHHHHHHHhcccccceeeEEeCCCCccCc
Q 023832 105 LEDPLILVHEKKISNL------TAVVRVLELALKR-QRPLLIVAE--DVESEALATLILNKLRAGIKVCAIKAPGFGENR 175 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~------~~i~p~le~i~~~-~~pLlIiae--~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~r 175 (276)
..++++|+|-.+.++. +++..+|+.+.+. +.|+++... |-....+. +.+...=++..++..+
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~----~~l~~~~~v~~~~~l~----- 248 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGSDIII----EKLKKYDNVRLIEPLG----- 248 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHH----HHHTT-TTEEEE---------
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHH----HHhcccCCEEEECCCC-----
Confidence 6889999998765543 4688889988888 667888766 44444442 2222111666775443
Q ss_pred cchHHhHHhHhCCeEEecCCCcccc-ccCcccCceeeEEEE----------eCCcEEEEcCCCCHHHHHHHHHHHHHH--
Q 023832 176 KANMQDLAVLTGGDLITEELGMDLE-KVNLDMLGTCKKVTI----------SKDDTVILDGAGDKKSIEERCEQIRSA-- 242 (276)
Q Consensus 176 k~~LedIA~~TGg~vi~~~~g~~l~-~~~~~~LG~a~~v~v----------~~~~T~i~~g~g~~~~i~~r~~~l~~~-- 242 (276)
..+.++.+-.+.++-.+.| .+- +.. .||.- -+.+ .....++++ .++++|.+-++++...
T Consensus 249 --~~~~l~ll~~a~~vvgdSs-GI~eEa~--~lg~P-~v~iR~~geRqe~r~~~~nvlv~--~~~~~I~~ai~~~l~~~~ 320 (346)
T PF02350_consen 249 --YEEYLSLLKNADLVVGDSS-GIQEEAP--SLGKP-VVNIRDSGERQEGRERGSNVLVG--TDPEAIIQAIEKALSDKD 320 (346)
T ss_dssp --HHHHHHHHHHESEEEESSH-HHHHHGG--GGT---EEECSSS-S-HHHHHTTSEEEET--SSHHHHHHHHHHHHH-HH
T ss_pred --HHHHHHHHhcceEEEEcCc-cHHHHHH--HhCCe-EEEecCCCCCHHHHhhcceEEeC--CCHHHHHHHHHHHHhChH
Confidence 3567777777887766654 432 322 45531 2223 245555533 7899999988877753
Q ss_pred ----HHhcCChhHHHHHHHHHHh
Q 023832 243 ----IENSTSDYDKEKLQERLAK 261 (276)
Q Consensus 243 ----~~~~~s~~~~~~L~eRla~ 261 (276)
+....++|-..+=-+||..
T Consensus 321 ~~~~~~~~~npYgdG~as~rI~~ 343 (346)
T PF02350_consen 321 FYRKLKNRPNPYGDGNASERIVE 343 (346)
T ss_dssp HHHHHHCS--TT-SS-HHHHHHH
T ss_pred HHHhhccCCCCCCCCcHHHHHHH
Confidence 3344567777777777765
No 257
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=23.69 E-value=1.1e+02 Score=27.34 Aligned_cols=40 Identities=18% Similarity=0.408 Sum_probs=20.9
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHH-hCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALK-RQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~-~~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+|..+.+ .|+.+++++.+.+
T Consensus 145 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~ 190 (255)
T PRK11248 145 ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE 190 (255)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 566666666665543 335555555432 3455555555543
No 258
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=23.65 E-value=96 Score=29.51 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=32.2
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.++. .++...|..+.+. +.+.++++.|.+
T Consensus 151 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ 196 (353)
T TIGR03265 151 TSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE 196 (353)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 799999999999876 4577777777654 788888888876
No 259
>PF04316 FlgM: Anti-sigma-28 factor, FlgM; InterPro: IPR007412 FlgM binds and inhibits the activity of the transcription factor sigma 28. Inhibition of sigma 28 prevents the expression of genes from flagellar transcriptional class 3, which include genes for the filament and chemotaxis. Correctly assembled basal body-hook structures export FlgM, relieving inhibition of sigma 28 and allowing expression of class 3 genes. NMR studies show that free FlgM is mostly unfolded, which may facilitate its export. The C-terminal half of FlgM adopts a tertiary structure when it binds to sigma 28. All mutations in FlgM that prevent sigma 28 inhibition affect the C-terminal domain and is the region thought to constitute the binding domain. A minimal binding domain has been identified between Glu 64 and Arg 88 in Salmonella typhimurium (P26477 from SWISSPROT).The N-terminal portion remains unstructured and may be necessary for recognition by the export machinery [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0019861 flagellum; PDB: 1RP3_B 1SC5_B.
Probab=23.64 E-value=1.5e+02 Score=20.40 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 023832 228 DKKSIEERCEQIRSAIENSTSDYDKEKLQERLAK 261 (276)
Q Consensus 228 ~~~~i~~r~~~l~~~~~~~~s~~~~~~L~eRla~ 261 (276)
.++.=.+||++|+.+|+.=+-..+-+++-++|-.
T Consensus 22 ~~~vr~~kV~~ik~~I~~G~Y~vd~~~iA~~ml~ 55 (57)
T PF04316_consen 22 MPDVRAEKVAEIKAAIASGTYKVDAEKIAEKMLD 55 (57)
T ss_dssp HHHCSHHHHHHHHHHHHTT-----HHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 3444468999999999997777778888777654
No 260
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=23.62 E-value=1.1e+02 Score=26.95 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=29.1
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|+.+.+. ++.+|+++.+.+
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~ 192 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE 192 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 789999999987665 4577777776665 667777776654
No 261
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=23.59 E-value=7.1e+02 Score=24.45 Aligned_cols=88 Identities=24% Similarity=0.355 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCe---EEec---CC
Q 023832 122 AVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGD---LITE---EL 195 (276)
Q Consensus 122 ~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~---vi~~---~~ 195 (276)
.+...||+-.++|+|+||+...|+-.---+=+..+.=+..++++|.+- .+.-.|++-.+-.|. .|+. |-
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~-----d~~R~EkV~~fR~G~~~lLiTTTILER 367 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE-----DQHRKEKVEAFRDGKITLLITTTILER 367 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc-----CccHHHHHHHHHcCceEEEEEeehhhc
Confidence 356668888899999999999885221111112122344566777432 233345555544443 1222 24
Q ss_pred CccccccCcccCceeeEEE
Q 023832 196 GMDLEKVNLDMLGTCKKVT 214 (276)
Q Consensus 196 g~~l~~~~~~~LG~a~~v~ 214 (276)
|.++.+++.-.||.-.++.
T Consensus 368 GVTfp~vdV~Vlgaeh~vf 386 (441)
T COG4098 368 GVTFPNVDVFVLGAEHRVF 386 (441)
T ss_pred ccccccceEEEecCCcccc
Confidence 8888888888888766554
No 262
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=23.58 E-value=1.1e+02 Score=27.54 Aligned_cols=40 Identities=20% Similarity=0.359 Sum_probs=19.2
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHH-hCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALK-RQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~-~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+ .++.++++..|.+
T Consensus 150 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~ 195 (257)
T PRK11247 150 HRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS 195 (257)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 456666666655443 234444444432 2445555544443
No 263
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=23.51 E-value=2.4e+02 Score=23.73 Aligned_cols=75 Identities=20% Similarity=0.244 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhCCCeEEEec-CccchHHHHHHHhccc-ccceeeEEeCCCCc----------cCc-------cchHH
Q 023832 120 LTAVVRVLELALKRQRPLLIVAE-DVESEALATLILNKLR-AGIKVCAIKAPGFG----------ENR-------KANMQ 180 (276)
Q Consensus 120 ~~~i~p~le~i~~~~~pLlIiae-~i~~~aL~~Lv~n~~~-g~~~v~aVkaP~~g----------~~r-------k~~Le 180 (276)
.+++...++.+..+..|+||..| +...+.++-.+.+... ..-+.+.|....+. ..+ +...-
T Consensus 8 m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G 87 (168)
T PF00158_consen 8 MKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKG 87 (168)
T ss_dssp HHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEH
T ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCC
Confidence 45667777777778899999999 8888888888877543 45677788877652 221 11224
Q ss_pred hHHhHhCCeEEecC
Q 023832 181 DLAVLTGGDLITEE 194 (276)
Q Consensus 181 dIA~~TGg~vi~~~ 194 (276)
-+..+-||+++-++
T Consensus 88 ~l~~A~~GtL~Ld~ 101 (168)
T PF00158_consen 88 LLEQANGGTLFLDE 101 (168)
T ss_dssp HHHHTTTSEEEEET
T ss_pred ceeeccceEEeecc
Confidence 56677788877664
No 264
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=23.49 E-value=2.7e+02 Score=21.59 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=43.7
Q ss_pred HHHHHHhCCCeEEEec-CccchHHHHHHH-hcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEec
Q 023832 127 LELALKRQRPLLIVAE-DVESEALATLIL-NKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITE 193 (276)
Q Consensus 127 le~i~~~~~pLlIiae-~i~~~aL~~Lv~-n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~ 193 (276)
|......=.|.+.|.. ++++..+.-+-. -.-+..++|=.. ....+.+++..+.||-.||+.++..
T Consensus 9 Lr~~ah~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVkvl--~~~~~~~~e~a~~i~~~~~a~~Vq~ 75 (95)
T TIGR00253 9 LRGKAHHLKPVVLVGKNGLTEGVIKEIEQALEHRELIKVKVA--TEDREDKTLIAEALVKETGACNVQV 75 (95)
T ss_pred HHHHhCCCCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEEec--CCChhHHHHHHHHHHHHHCCEEEEE
Confidence 4443333379999988 888888875542 233344555433 2345678899999999999998855
No 265
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.49 E-value=95 Score=27.62 Aligned_cols=39 Identities=15% Similarity=0.333 Sum_probs=22.4
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|..+.+ ++.+++++.+.+
T Consensus 172 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~ 215 (259)
T PRK14274 172 TNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ 215 (259)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH
Confidence 577777777765443 345555555543 455566555544
No 266
>TIGR03586 PseI pseudaminic acid synthase.
Probab=23.38 E-value=2.3e+02 Score=26.93 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=19.0
Q ss_pred cCceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEec
Q 023832 106 EDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAE 142 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae 142 (276)
..|-||=+-. +++++|..+++.+.+.|.+-+++..
T Consensus 134 gkPvilstG~--~t~~Ei~~Av~~i~~~g~~~i~Llh 168 (327)
T TIGR03586 134 GKPIIMSTGI--ATLEEIQEAVEACREAGCKDLVLLK 168 (327)
T ss_pred CCcEEEECCC--CCHHHHHHHHHHHHHCCCCcEEEEe
Confidence 3444433332 5666666666666666654455533
No 267
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=23.12 E-value=1.1e+02 Score=27.44 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=28.6
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|....+. +..++++..+.+
T Consensus 159 ~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~ 205 (265)
T PRK10253 159 AQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN 205 (265)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3789999999877654 3466777776654 666777766665
No 268
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=23.12 E-value=96 Score=30.65 Aligned_cols=40 Identities=20% Similarity=0.342 Sum_probs=32.2
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+|....+.|+.+++++.|.+
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~ 201 (501)
T PRK11288 157 RNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME 201 (501)
T ss_pred hCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 799999999988664 4577777777677888888888876
No 269
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=23.00 E-value=99 Score=30.49 Aligned_cols=40 Identities=8% Similarity=0.194 Sum_probs=31.8
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|..+.+.|+.++++..|.+
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~ 202 (500)
T TIGR02633 158 KQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN 202 (500)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH
Confidence 789999999988764 4577778777777778888887765
No 270
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=22.88 E-value=99 Score=27.87 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=23.2
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|..+.+ ++.++++..+.+
T Consensus 184 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~ 227 (271)
T PRK14238 184 IEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ 227 (271)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH
Confidence 577777777766553 345555665544 455555555544
No 271
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=22.83 E-value=1.2e+02 Score=25.93 Aligned_cols=40 Identities=13% Similarity=0.253 Sum_probs=28.9
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhC-CCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQ-RPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~-~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..++....+.+ ..+++++.+.+
T Consensus 88 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~ 133 (177)
T cd03222 88 RNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA 133 (177)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 789999999987664 34667777766554 67777777664
No 272
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.82 E-value=1.1e+02 Score=27.64 Aligned_cols=41 Identities=24% Similarity=0.359 Sum_probs=28.6
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|....+.|.-+|++..+.+
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~ 198 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD 198 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 4788888888876554 4566777776655667777776755
No 273
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=22.77 E-value=1.1e+02 Score=27.14 Aligned_cols=39 Identities=15% Similarity=0.348 Sum_probs=22.1
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|..+.+ ++.++++..+.+
T Consensus 166 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~ 209 (253)
T PRK14242 166 VEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ 209 (253)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH
Confidence 567777777766543 335555555533 455555555544
No 274
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=22.71 E-value=1e+02 Score=27.75 Aligned_cols=40 Identities=25% Similarity=0.512 Sum_probs=26.6
Q ss_pred cCceEEEecccCCcHH-----HHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNLT-----AVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~~-----~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+..+ .+..+|+...+. +..+++++.+.+
T Consensus 168 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~ 213 (268)
T PRK10419 168 VEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR 213 (268)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH
Confidence 7888888888776542 466777766554 556666666654
No 275
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=22.65 E-value=2.4e+02 Score=21.01 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=16.2
Q ss_pred HHHhCCCeEEEecCccchHHHHH
Q 023832 130 ALKRQRPLLIVAEDVESEALATL 152 (276)
Q Consensus 130 i~~~~~pLlIiae~i~~~aL~~L 152 (276)
+.+...-|+|+|+|+++....-+
T Consensus 23 i~~gkaklViiA~D~~~~~~~~i 45 (82)
T PRK13602 23 LKRGSVKEVVVAEDADPRLTEKV 45 (82)
T ss_pred HHcCCeeEEEEECCCCHHHHHHH
Confidence 33445689999999998754433
No 276
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=22.49 E-value=1.6e+02 Score=28.38 Aligned_cols=83 Identities=25% Similarity=0.361 Sum_probs=44.1
Q ss_pred EEEeEEEeeeccCcccccccccceeeecCceEEEecccC----CcHHHHHHH---HHHHH--HhCCCeEEEecCccc-hH
Q 023832 79 VVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKI----SNLTAVVRV---LELAL--KRQRPLLIVAEDVES-EA 148 (276)
Q Consensus 79 v~eG~~fd~gy~spyfvt~~~~~~~~l~~p~Ill~d~~i----~~~~~i~p~---le~i~--~~~~pLlIiae~i~~-~a 148 (276)
+++|-..|||.-+-+ ..+ .|..+-..++.|..= +..+++.-+ ||.-- -+.+|-+|+|.-+|- |+
T Consensus 254 iI~GAh~nkGlG~~F-LrH-----iER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea 327 (366)
T KOG1489|consen 254 IIEGAHMNKGLGYKF-LRH-----IERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA 327 (366)
T ss_pred ccccccccCcccHHH-HHH-----HHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH
Confidence 678888999876543 322 233444555556521 222333333 33322 124799999996655 55
Q ss_pred HHHH---HHhcccc--cceeeEEe
Q 023832 149 LATL---ILNKLRA--GIKVCAIK 167 (276)
Q Consensus 149 L~~L---v~n~~~g--~~~v~aVk 167 (276)
-..+ ...++++ .++++|+.
T Consensus 328 e~~~l~~L~~~lq~~~V~pvsA~~ 351 (366)
T KOG1489|consen 328 EKNLLSSLAKRLQNPHVVPVSAKS 351 (366)
T ss_pred HHHHHHHHHHHcCCCcEEEeeecc
Confidence 4444 1233443 37777774
No 277
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.47 E-value=1.1e+02 Score=27.12 Aligned_cols=39 Identities=21% Similarity=0.360 Sum_probs=27.1
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+ ++.+++++.+.+
T Consensus 163 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~ 206 (250)
T PRK14245 163 VSPSVLLMDEPASALDPISTAKVEELIHELKK-DYTIVIVTHNMQ 206 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH
Confidence 688888888877654 456677776643 566777766665
No 278
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=22.43 E-value=1.3e+02 Score=28.13 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhcCChh------------HHHHHHHHHHhhcC
Q 023832 229 KKSIEERCEQIRSAIENSTSDY------------DKEKLQERLAKLSG 264 (276)
Q Consensus 229 ~~~i~~r~~~l~~~~~~~~s~~------------~~~~L~eRla~L~g 264 (276)
-.+|..|+++.+.++++..|++ |-|+++.||++|..
T Consensus 114 Iq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lqs 161 (338)
T KOG3647|consen 114 IQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQS 161 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678889999999998877654 34567778888764
No 279
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=22.35 E-value=1.1e+02 Score=29.65 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=32.2
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
..+|.||+.|.+.+.. .++...|..+.+. ++.+++++.|.+
T Consensus 180 a~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~ 226 (382)
T TIGR03415 180 AMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD 226 (382)
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3799999999998765 4577777776654 788899888877
No 280
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=22.33 E-value=1.2e+02 Score=27.57 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=25.9
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|..+.+. |+.+|++..+.+
T Consensus 161 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~ 206 (280)
T PRK13633 161 MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME 206 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH
Confidence 678888888876553 3466666666543 666666666665
No 281
>PF01808 AICARFT_IMPCHas: AICARFT/IMPCHase bienzyme; InterPro: IPR002695 This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase 2.1.2.3 from EC (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate []. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase 3.5.4.10 from EC (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP [].; GO: 0003937 IMP cyclohydrolase activity, 0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity, 0006164 purine nucleotide biosynthetic process; PDB: 1ZCZ_A 1PL0_D 1PKX_C 1P4R_B 1G8M_B 2IU3_B 2B1I_A 2B1G_D 1OZ0_B 1M9N_B ....
Probab=22.19 E-value=81 Score=29.90 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=22.3
Q ss_pred EEEecCccchHHHHHHHhcccccceeeEEeCC
Q 023832 138 LIVAEDVESEALATLILNKLRAGIKVCAIKAP 169 (276)
Q Consensus 138 lIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP 169 (276)
+|||.|++++||..|... .+++++.++.+
T Consensus 196 viiAP~f~~eAleiL~~K---KnlRll~~~~~ 224 (315)
T PF01808_consen 196 VIIAPDFTPEALEILKKK---KNLRLLKLPDP 224 (315)
T ss_dssp EEEESEB-HHHHHHHHCT---CCGEEEEEEES
T ss_pred EEEeCCCCHHHHHHHHhc---CCeEEEEeccc
Confidence 699999999999999765 36777777543
No 282
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.17 E-value=1.2e+02 Score=27.18 Aligned_cols=40 Identities=10% Similarity=0.296 Sum_probs=25.5
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+. |+-+++++.+.+
T Consensus 159 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~ 204 (269)
T PRK13648 159 LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS 204 (269)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch
Confidence 678888888876553 3466666665543 556666666654
No 283
>PRK07714 hypothetical protein; Provisional
Probab=22.12 E-value=2.9e+02 Score=21.19 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=16.4
Q ss_pred HHHHHHhCCCeEEEecCccchHHHHH
Q 023832 127 LELALKRQRPLLIVAEDVESEALATL 152 (276)
Q Consensus 127 le~i~~~~~pLlIiae~i~~~aL~~L 152 (276)
++.+.+....|||+|+|+++.--.-+
T Consensus 27 ~~al~~g~~~lViiA~D~s~~~~~ki 52 (100)
T PRK07714 27 LKEVRSGKAKLVLLSEDASVNTTKKI 52 (100)
T ss_pred HHHHHhCCceEEEEeCCCCHHHHHHH
Confidence 33444445678888888887755544
No 284
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=22.10 E-value=1.1e+02 Score=30.47 Aligned_cols=40 Identities=13% Similarity=0.267 Sum_probs=31.6
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+|....+.|..+|++..|.+
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~ 201 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP 201 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 799999999988764 4577778777777778888877765
No 285
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=22.09 E-value=1.1e+02 Score=30.34 Aligned_cols=40 Identities=5% Similarity=0.213 Sum_probs=31.5
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+|....+.|..++++..|.+
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~ 204 (506)
T PRK13549 160 KQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN 204 (506)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH
Confidence 799999999988765 4577778777666777888877765
No 286
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=22.09 E-value=1.9e+02 Score=28.45 Aligned_cols=77 Identities=14% Similarity=0.265 Sum_probs=50.2
Q ss_pred CceEEEeccc--CCc----HHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccce---eeEEeCCCCccCccc
Q 023832 107 DPLILVHEKK--ISN----LTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIK---VCAIKAPGFGENRKA 177 (276)
Q Consensus 107 ~p~Ill~d~~--i~~----~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~---v~aVkaP~~g~~rk~ 177 (276)
+|.+|+.|.- +.. -++++.+++...+.++++|+.++ -.+.-+..+. .+++..+. ++-++.|.+ +.|.+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd-~~p~~l~~l~-~rL~SR~~~gl~v~i~~pd~-e~r~~ 270 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD-REPQKLSEFQ-DRLVSRFQMGLVAKLEPPDE-ETRKK 270 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECC-CCHHHHHHHH-HHHhhHHhcCceEeeCCCCH-HHHHH
Confidence 6889999873 211 24677888888888877666544 5555555542 34444443 778888985 56777
Q ss_pred hHHhHHhHh
Q 023832 178 NMQDLAVLT 186 (276)
Q Consensus 178 ~LedIA~~T 186 (276)
.|+..+..-
T Consensus 271 IL~~~~~~~ 279 (440)
T PRK14088 271 IARKMLEIE 279 (440)
T ss_pred HHHHHHHhc
Confidence 888777643
No 287
>PLN02541 uracil phosphoribosyltransferase
Probab=22.05 E-value=5.6e+02 Score=23.26 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=44.2
Q ss_pred CceEEEecccCCcHHHHHHHHHHHHHhCCC---eEEEecCccchHHHHHHHhcccccceeeEE
Q 023832 107 DPLILVHEKKISNLTAVVRVLELALKRQRP---LLIVAEDVESEALATLILNKLRAGIKVCAI 166 (276)
Q Consensus 107 ~p~Ill~d~~i~~~~~i~p~le~i~~~~~p---LlIiae~i~~~aL~~Lv~n~~~g~~~v~aV 166 (276)
+-.++|+|--|.+-..+..+++.+.+.|.+ +.+++==-+++.++.+..+.-.=.+-+++|
T Consensus 157 ~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~v~~ias~~Gl~~i~~~fP~v~I~ta~I 219 (244)
T PLN02541 157 GSRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRVVCAVAAPPALKKLSEKFPGLHVYAGII 219 (244)
T ss_pred CCEEEEECcchhhhHHHHHHHHHHHHcCCCcccEEEEEEEECHHHHHHHHHHCcCCEEEEEEE
Confidence 347999999999999999999999999965 333333447788888887755545566666
No 288
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=21.98 E-value=1.1e+02 Score=27.52 Aligned_cols=74 Identities=12% Similarity=0.263 Sum_probs=46.4
Q ss_pred ecccCCcHHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEe
Q 023832 113 HEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLIT 192 (276)
Q Consensus 113 ~d~~i~~~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~ 192 (276)
+.....+.++|.+.|..+...+-.++++-.+-+.+.|.+ . +.....+ -.|+-||..++
T Consensus 89 ~~~~~~s~~ei~~~l~~~~~~~~~v~~vNS~~~~~~ldy---~-----------------~~~~~~~--~~I~VGGn~Ls 146 (239)
T PF10593_consen 89 TDPDPPSWEEIKPELPKAISDGIEVVVVNSGSSDDSLDY---D-----------------DGENLGL--NVIAVGGNKLS 146 (239)
T ss_pred ccCCCcCHHHHHHHHHHHHhcCceEEEEeCCCccccccc---c-----------------ccccCCc--eEEEECCcccc
Confidence 444567889999999998886556666653333332211 1 1111011 44566999999
Q ss_pred cCCCccccccCcccCcee
Q 023832 193 EELGMDLEKVNLDMLGTC 210 (276)
Q Consensus 193 ~~~g~~l~~~~~~~LG~a 210 (276)
+ |+++|.++.+-+.+-
T Consensus 147 R--GlTleGL~vsYf~R~ 162 (239)
T PF10593_consen 147 R--GLTLEGLTVSYFLRN 162 (239)
T ss_pred C--ceeECCcEEEEecCC
Confidence 9 999999887765543
No 289
>KOG1981 consensus SOK1 kinase belonging to the STE20/SPS1/GC kinase family [Signal transduction mechanisms]
Probab=21.92 E-value=78 Score=31.92 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 023832 230 KSIEERCEQIRSAIENSTSDYDKEKLQERLAK 261 (276)
Q Consensus 230 ~~i~~r~~~l~~~~~~~~s~~~~~~L~eRla~ 261 (276)
+--.-||+.+|-.|.....+|||++.++||++
T Consensus 226 DiaN~~I~~lrp~L~~~sveyEkk~Fqk~l~~ 257 (513)
T KOG1981|consen 226 DIANYQIRILRPALQENSVEYEKKKFQKLLGQ 257 (513)
T ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhh
Confidence 34456899999999988899999999999984
No 290
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=21.61 E-value=1e+02 Score=26.88 Aligned_cols=39 Identities=26% Similarity=0.467 Sum_probs=26.3
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|.... .|+.++++..+.+
T Consensus 156 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~ 199 (238)
T cd03249 156 RNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS 199 (238)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH
Confidence 688888888876654 45666676664 5666666666654
No 291
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=21.47 E-value=1.1e+02 Score=27.08 Aligned_cols=39 Identities=18% Similarity=0.349 Sum_probs=24.3
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|..+.+ ++.+++++.+.+
T Consensus 165 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~ 208 (258)
T PRK14241 165 VEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ 208 (258)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH
Confidence 678888888776554 346666666543 456666665554
No 292
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=21.47 E-value=2.8e+02 Score=20.51 Aligned_cols=45 Identities=29% Similarity=0.337 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEE
Q 023832 119 NLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAI 166 (276)
Q Consensus 119 ~~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aV 166 (276)
+..|.+..--.+.+.+.|+|++.++++.....+|-.++. -++..|
T Consensus 35 ~~~Dalsa~~~a~~~~~PIll~~~~l~~~~~~~l~~~~~---~~v~ii 79 (92)
T PF04122_consen 35 NFADALSASPLAAKNNAPILLVNNSLPSSVKAFLKSLNI---KKVYII 79 (92)
T ss_pred chhhhhhhHHHHHhcCCeEEEECCCCCHHHHHHHHHcCC---CEEEEE
Confidence 355666666666778889999887788777777776633 356555
No 293
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=21.38 E-value=1.2e+02 Score=26.66 Aligned_cols=39 Identities=18% Similarity=0.369 Sum_probs=26.8
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+ ++.+++++.+.+
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~ 204 (247)
T TIGR00972 161 VEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ 204 (247)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH
Confidence 688888888887654 346677776655 356677666655
No 294
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=21.34 E-value=2.7e+02 Score=28.37 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEEec-CccchHHHHHHHhc---------ccccceeeEEeCCCC
Q 023832 120 LTAVVRVLELALKRQRPLLIVAE-DVESEALATLILNK---------LRAGIKVCAIKAPGF 171 (276)
Q Consensus 120 ~~~i~p~le~i~~~~~pLlIiae-~i~~~aL~~Lv~n~---------~~g~~~v~aVkaP~~ 171 (276)
++++...++.+.+++.|+||..| +...+.++-.+.+. .+..-+.++|.+..+
T Consensus 228 m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal 289 (538)
T PRK15424 228 MEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAI 289 (538)
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccC
Confidence 45677777788888999999999 78888888887765 445567777776654
No 295
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=21.26 E-value=1.1e+02 Score=30.05 Aligned_cols=40 Identities=13% Similarity=0.274 Sum_probs=31.9
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+|....+.|..++++..|.+
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~ 195 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME 195 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 799999999988764 4577778777777878888887775
No 296
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.26 E-value=1.2e+02 Score=26.67 Aligned_cols=39 Identities=15% Similarity=0.298 Sum_probs=24.6
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. ..+..+|....+ ++.+++++.+.+
T Consensus 164 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~ 207 (251)
T PRK14270 164 VKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ 207 (251)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH
Confidence 678888888776653 446666666554 456666666554
No 297
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.25 E-value=1.1e+02 Score=26.22 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=28.3
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|+...+ +..+++++.+.+
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~ 190 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE 190 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH
Confidence 3789999999987654 457777777765 456667666665
No 298
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.23 E-value=2.8e+02 Score=25.78 Aligned_cols=61 Identities=21% Similarity=0.300 Sum_probs=42.8
Q ss_pred CceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHh
Q 023832 107 DPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLT 186 (276)
Q Consensus 107 ~p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~T 186 (276)
+++||+.+..=+...+..|+++.+....+ +++ .+.||.+. ++..-..|+.++-.|
T Consensus 146 ~~RIlii~~s~~~~~qYi~~mn~Ifaaqk-------------------~~I--~Idv~~L~----~e~~~~~lqQa~~~T 200 (279)
T TIGR00627 146 KSRILVISITPDMALQYIPLMNCIFSAQK-------------------QNI--PIDVVSIG----GDFTSGFLQQAADIT 200 (279)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHHH-------------------cCc--eEEEEEeC----CccccHHHHHHHHHh
Confidence 68999998866667788888887654432 222 24666772 233467899999999
Q ss_pred CCeEEe
Q 023832 187 GGDLIT 192 (276)
Q Consensus 187 Gg~vi~ 192 (276)
||....
T Consensus 201 gG~Y~~ 206 (279)
T TIGR00627 201 GGSYLH 206 (279)
T ss_pred CCEEec
Confidence 998764
No 299
>PRK13452 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=21.21 E-value=4.7e+02 Score=21.69 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHHHHHh-cCChhHHHHHH
Q 023832 227 GDKKSIEERCEQIRSAIEN-STSDYDKEKLQ 256 (276)
Q Consensus 227 g~~~~i~~r~~~l~~~~~~-~~s~~~~~~L~ 256 (276)
=|.++.+.+.+..+++++. ..++.++++.+
T Consensus 90 ID~~~ae~a~~~Ae~~L~~~~~~~~~~~~a~ 120 (145)
T PRK13452 90 LNQAEAEKARARAKEVLKNPDASKLDIEAAN 120 (145)
T ss_pred CCHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3788888888889999977 33444444433
No 300
>PRK06620 hypothetical protein; Validated
Probab=21.16 E-value=92 Score=27.36 Aligned_cols=72 Identities=19% Similarity=0.228 Sum_probs=47.9
Q ss_pred CceEEEecccCCcHH--HHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccce---eeEEeCCCCccCccchHHh
Q 023832 107 DPLILVHEKKISNLT--AVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIK---VCAIKAPGFGENRKANMQD 181 (276)
Q Consensus 107 ~p~Ill~d~~i~~~~--~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~---v~aVkaP~~g~~rk~~Led 181 (276)
+..+|+.|. |...+ .+.-+++.+.+.|+++||-+. -.+.-+. | ..++..+. ++.++.|...+ +...++.
T Consensus 85 ~~d~lliDd-i~~~~~~~lf~l~N~~~e~g~~ilits~-~~p~~l~-l--~~L~SRl~~gl~~~l~~pd~~~-~~~~l~k 158 (214)
T PRK06620 85 KYNAFIIED-IENWQEPALLHIFNIINEKQKYLLLTSS-DKSRNFT-L--PDLSSRIKSVLSILLNSPDDEL-IKILIFK 158 (214)
T ss_pred cCCEEEEec-cccchHHHHHHHHHHHHhcCCEEEEEcC-CCccccc-h--HHHHHHHhCCceEeeCCCCHHH-HHHHHHH
Confidence 345677765 55443 577788888899987666554 3333332 2 66777777 88999999755 6677777
Q ss_pred HHh
Q 023832 182 LAV 184 (276)
Q Consensus 182 IA~ 184 (276)
.+.
T Consensus 159 ~~~ 161 (214)
T PRK06620 159 HFS 161 (214)
T ss_pred HHH
Confidence 665
No 301
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=21.15 E-value=1.2e+02 Score=30.01 Aligned_cols=40 Identities=8% Similarity=0.351 Sum_probs=18.4
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+|....+.|..++++..|.+
T Consensus 420 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~ 464 (500)
T TIGR02633 420 TNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA 464 (500)
T ss_pred hCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 355555555554432 2344444444444444444444443
No 302
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=21.14 E-value=5.5e+02 Score=22.31 Aligned_cols=63 Identities=16% Similarity=0.199 Sum_probs=44.8
Q ss_pred eecCceEEEecccCCcHHHHHHHHHHHHHhCCCeEEEec-CccchHHHHHHHhcccccceeeEE
Q 023832 104 ELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAE-DVESEALATLILNKLRAGIKVCAI 166 (276)
Q Consensus 104 ~l~~p~Ill~d~~i~~~~~i~p~le~i~~~~~pLlIiae-~i~~~aL~~Lv~n~~~g~~~v~aV 166 (276)
.+++-.|++.|--+.+-..+.-+++.+.+.|..-+.++- =..++++..+..+.-.=.+-+++|
T Consensus 121 ~i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~~~~ll~~~~gl~~l~~~~p~v~i~~~~i 184 (209)
T PRK00129 121 DIDERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIKVLCLVAAPEGIKALEEAHPDVEIYTAAI 184 (209)
T ss_pred cCCCCEEEEECCcccchHHHHHHHHHHHHcCCCEEEEEEEecCHHHHHHHHHHCCCcEEEEEee
Confidence 566778999999999999999999999998843343333 446788888876654433334444
No 303
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=21.06 E-value=1.2e+02 Score=26.19 Aligned_cols=40 Identities=18% Similarity=0.364 Sum_probs=27.7
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|....+. +.++++..+.+
T Consensus 157 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~ 201 (227)
T cd03260 157 ANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ 201 (227)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH
Confidence 3789999999987654 3466667766554 56677666665
No 304
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.98 E-value=1.3e+02 Score=26.68 Aligned_cols=14 Identities=14% Similarity=0.373 Sum_probs=6.9
Q ss_pred cCceEEEecccCCc
Q 023832 106 EDPLILVHEKKISN 119 (276)
Q Consensus 106 ~~p~Ill~d~~i~~ 119 (276)
.+|.++++|.+.+.
T Consensus 166 ~~p~lllLDEP~~g 179 (253)
T PRK14261 166 VNPEVILMDEPCSA 179 (253)
T ss_pred cCCCEEEEeCCccc
Confidence 44555555554433
No 305
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=20.97 E-value=1.2e+02 Score=30.23 Aligned_cols=11 Identities=18% Similarity=0.519 Sum_probs=4.8
Q ss_pred CceEEEecccC
Q 023832 107 DPLILVHEKKI 117 (276)
Q Consensus 107 ~p~Ill~d~~i 117 (276)
+|.+|++|.+.
T Consensus 421 ~p~lLlLDEPt 431 (510)
T PRK15439 421 SPQLLIVDEPT 431 (510)
T ss_pred CCCEEEECCCC
Confidence 44444444433
No 306
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.95 E-value=1.3e+02 Score=26.57 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=23.7
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+ ++.+++++.+.+
T Consensus 166 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~ 209 (253)
T PRK14267 166 MKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA 209 (253)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH
Confidence 677888888776543 346666666544 455666655544
No 307
>PHA02675 ORF104 fusion protein; Provisional
Probab=20.94 E-value=3e+02 Score=21.11 Aligned_cols=45 Identities=29% Similarity=0.324 Sum_probs=31.9
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 023832 217 KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLS 263 (276)
Q Consensus 217 ~~~T~i~~g~g~~~~i~~r~~~l~~~~~~~~s~~~~~~L~eRla~L~ 263 (276)
.+.-+.--|+.+++.++.|.-.|........ ..-..+.+||-||-
T Consensus 20 ~~~~vy~ag~~~~esle~RL~~L~k~~~~i~--~cC~~~~~~L~RLE 64 (90)
T PHA02675 20 DDNGVYAAGAPSKESVEERLVSLLDSYKTIT--DCCRETGARLDRLE 64 (90)
T ss_pred CCCceeecCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 4556777788899999999988886665543 33456667777663
No 308
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=20.92 E-value=1.3e+02 Score=27.75 Aligned_cols=40 Identities=20% Similarity=0.384 Sum_probs=30.4
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhC-CCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQ-RPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~-~pLlIiae~i~ 145 (276)
-+|++|++|..+|.. .+|+.+|..+.+.. --.|+|+.|+.
T Consensus 158 ~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~ 203 (252)
T COG1124 158 PEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA 203 (252)
T ss_pred cCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH
Confidence 689999999998775 36888888877654 35677777764
No 309
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=20.80 E-value=1.2e+02 Score=30.02 Aligned_cols=41 Identities=10% Similarity=0.267 Sum_probs=32.1
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.+|++|.+.+.. +.+..+|....+.|..++++..|.+
T Consensus 157 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~ 202 (501)
T PRK10762 157 SFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK 202 (501)
T ss_pred hcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3799999999988764 4577778887666777888877775
No 310
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=20.79 E-value=2.8e+02 Score=23.01 Aligned_cols=32 Identities=31% Similarity=0.459 Sum_probs=20.9
Q ss_pred cceeeEEeCCCCccCccchHHhHHhHhCCeEEe
Q 023832 160 GIKVCAIKAPGFGENRKANMQDLAVLTGGDLIT 192 (276)
Q Consensus 160 ~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~ 192 (276)
.+.+..|-..+. ......|+.||-.|||+.+.
T Consensus 132 gi~v~~I~~~~~-~~~~~~l~~iA~~tgG~~~~ 163 (178)
T cd01451 132 GISALVIDTEGR-PVRRGLAKDLARALGGQYVR 163 (178)
T ss_pred CCcEEEEeCCCC-ccCccHHHHHHHHcCCeEEE
Confidence 355566632221 12567899999999999764
No 311
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=20.70 E-value=1.2e+02 Score=27.04 Aligned_cols=39 Identities=15% Similarity=0.287 Sum_probs=21.1
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+|....+ +..+++++.+.+
T Consensus 173 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~ 216 (260)
T PRK10744 173 IRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ 216 (260)
T ss_pred CCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH
Confidence 567777777765543 335555555532 444555555543
No 312
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.68 E-value=1e+02 Score=26.63 Aligned_cols=40 Identities=30% Similarity=0.521 Sum_probs=27.8
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|..+. .++.++++..+.+
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~ 199 (229)
T cd03254 155 LRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS 199 (229)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH
Confidence 3789999999887654 34667777664 3666777766664
No 313
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=20.68 E-value=1.1e+02 Score=25.58 Aligned_cols=39 Identities=13% Similarity=0.333 Sum_probs=21.3
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+|.... .++-++++..+.+
T Consensus 115 ~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~ 158 (178)
T cd03247 115 QDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT 158 (178)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH
Confidence 677777777765543 33555555443 2444555555544
No 314
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=20.66 E-value=1.2e+02 Score=28.80 Aligned_cols=41 Identities=22% Similarity=0.415 Sum_probs=31.0
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
+.+|.+|++|.+.+.. .++..+|....+.|+.++++..+.+
T Consensus 188 ~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~ 233 (340)
T PRK13536 188 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME 233 (340)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 3789999999988764 4577778777666777777766665
No 315
>PLN03211 ABC transporter G-25; Provisional
Probab=20.62 E-value=1.6e+02 Score=30.53 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=35.0
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCccchHHH
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVESEALA 150 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~~~aL~ 150 (276)
.+|.||++|.+-+.. ..+..+|....+.|+.++++..+.+.++..
T Consensus 223 ~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~ 272 (659)
T PLN03211 223 INPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQ 272 (659)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHH
Confidence 799999999987664 468888888777788888888787754443
No 316
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=20.62 E-value=2.1e+02 Score=26.54 Aligned_cols=51 Identities=29% Similarity=0.404 Sum_probs=40.1
Q ss_pred CCcHHHHHHHHHHHHHhCCCeEEEecCccchHHHHHHHhcccccceeeEEeCCCC
Q 023832 117 ISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGF 171 (276)
Q Consensus 117 i~~~~~i~p~le~i~~~~~pLlIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~ 171 (276)
.+.++-.+..++.+.+.+.|++|=..+++++-++.|..---+ +-+|.+|-|
T Consensus 76 FT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~----v~vv~a~Nf 126 (266)
T COG0289 76 FTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEK----VPVVIAPNF 126 (266)
T ss_pred CCCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhh----CCEEEeccc
Confidence 467788899999999999999998889999988877644222 557777776
No 317
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.62 E-value=1.3e+02 Score=27.20 Aligned_cols=40 Identities=13% Similarity=0.294 Sum_probs=25.5
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+|..+.+. |+-+++++.+.+
T Consensus 154 ~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~ 199 (277)
T PRK13652 154 MEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD 199 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 678888888876543 4466666666554 556666655554
No 318
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=20.61 E-value=1.2e+02 Score=28.56 Aligned_cols=40 Identities=13% Similarity=0.403 Sum_probs=30.9
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+|..+.+. |+.+++++.+.+
T Consensus 157 ~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~ 202 (343)
T PRK11153 157 SNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD 202 (343)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 799999999988764 4577778777654 777888877765
No 319
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.59 E-value=1.2e+02 Score=27.49 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=23.8
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+ ++.++++..+.+
T Consensus 178 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~ 221 (274)
T PRK14265 178 MKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ 221 (274)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 678888888776553 345566665543 455666655554
No 320
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=20.53 E-value=1.5e+02 Score=26.79 Aligned_cols=40 Identities=23% Similarity=0.466 Sum_probs=29.4
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDV 144 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i 144 (276)
..+|.|++.|.+..+. +.++.+|....+. |+-++++..|-
T Consensus 158 ~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~ 203 (226)
T COG1136 158 INNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP 203 (226)
T ss_pred hcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 4789999999986553 5688888887655 66777776653
No 321
>smart00798 AICARFT_IMPCHas AICARFT/IMPCHase bienzyme. This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP.
Probab=20.53 E-value=2.2e+02 Score=27.02 Aligned_cols=88 Identities=23% Similarity=0.389 Sum_probs=49.5
Q ss_pred EEEecCccchHHHHHHHhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEecC-CC-cc---ccccC-----cc--
Q 023832 138 LIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEE-LG-MD---LEKVN-----LD-- 205 (276)
Q Consensus 138 lIiae~i~~~aL~~Lv~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~~-~g-~~---l~~~~-----~~-- 205 (276)
+|||.+++++||..|...| ++++.-+ |...+. .-.++--..||-++-+. .. .+ ++-+| ++
T Consensus 193 viiAP~f~~eAleiL~~KK---nlRll~~--~~~~~~---~~~~~r~v~GG~LvQ~~D~~~~~~~~~~vvt~~~pt~~e~ 264 (311)
T smart00798 193 VIIAPDFDEEALEILSKKK---NLRLLEL--GPLPDP---DGLEFKSVSGGLLVQDRDNGGIDPEDLKVVTKRQPTEEEL 264 (311)
T ss_pred EEEcCCCCHHHHHHHhhCC---CEEEEEe--CCCCCC---CceEEEEEeeEEEEECCCCCCCCHHHCEecCCCCCCHHHH
Confidence 6999999999999998765 3455544 211111 11234445777665442 11 11 11111 11
Q ss_pred ----------cCceeeEEEEeCCcEEEEcCCCCHHHHH
Q 023832 206 ----------MLGTCKKVTISKDDTVILDGAGDKKSIE 233 (276)
Q Consensus 206 ----------~LG~a~~v~v~~~~T~i~~g~g~~~~i~ 233 (276)
..-+..-|.+.++..++=-|+|....|.
T Consensus 265 ~dL~FAwkv~k~vKSNAIv~ak~~~tvGiGaGQ~sRVd 302 (311)
T smart00798 265 KDLLFAWKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVD 302 (311)
T ss_pred HHhHHHHHHHhhcccceEEEEeCCeEEEecCCCccHHH
Confidence 2233445566788888878888876554
No 322
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=20.49 E-value=1.2e+02 Score=29.94 Aligned_cols=40 Identities=10% Similarity=0.255 Sum_probs=31.8
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.+|++|.+.+.. +.+..+|..+.+.|..+|++..|.+
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~ 206 (510)
T PRK09700 162 LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA 206 (510)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 799999999988764 4577788887777777888877764
No 323
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.38 E-value=1.3e+02 Score=27.35 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=28.6
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. +.+..+|....+. |+-+|+++.+.+
T Consensus 156 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~ 202 (279)
T PRK13635 156 ALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD 202 (279)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 3788888888877654 4577777776654 666777766765
No 324
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]
Probab=20.35 E-value=3.4e+02 Score=21.29 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=44.8
Q ss_pred HHHHHHhCCCeEEEec-CccchHHHHHH-HhcccccceeeEEeCCCCccCccchHHhHHhHhCCeEEec
Q 023832 127 LELALKRQRPLLIVAE-DVESEALATLI-LNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITE 193 (276)
Q Consensus 127 le~i~~~~~pLlIiae-~i~~~aL~~Lv-~n~~~g~~~v~aVkaP~~g~~rk~~LedIA~~TGg~vi~~ 193 (276)
|..-+.+-.|.+.|.. ++++..+.-+- .-.-++.++|=..+ ...+.|++..+.||-.||+.++-.
T Consensus 10 Lrs~Ah~l~piv~IGk~Glte~vi~Ei~~aL~~reLIKVkvl~--~~~edr~eia~~l~~~~~a~lVqv 76 (97)
T COG1534 10 LRSKAHHLKPIVQIGKNGLTEGVIKEIDRALEARELIKVKVLQ--NAREDKKEIAEALAEETGAELVQV 76 (97)
T ss_pred HHHhhccCCceEEecCCccCHHHHHHHHHHHHhCCcEEEEeec--cchhhHHHHHHHHHHHhCCEEeee
Confidence 3443444579999988 78888877543 22345667776664 334578899999999999987643
No 325
>PRK11239 hypothetical protein; Provisional
Probab=20.32 E-value=6.3e+02 Score=22.67 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcC
Q 023832 228 DKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSG 264 (276)
Q Consensus 228 ~~~~i~~r~~~l~~~~~~~~s~~~~~~L~eRla~L~g 264 (276)
..+++++|++.|+.+. ..|++++++|.+
T Consensus 184 ~~~~Le~rv~~Le~ev---------a~L~~~l~~l~~ 211 (215)
T PRK11239 184 VDGDLQARVEALEIEV---------AELKQRLDSLLA 211 (215)
T ss_pred hHHHHHHHHHHHHHHH---------HHHHHHHHHHHH
Confidence 3466889999998777 445666666543
No 326
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.26 E-value=1.4e+02 Score=26.20 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=28.1
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHh-CCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKR-QRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~-~~pLlIiae~i~ 145 (276)
.+|.++++|.+-+.. +.+..+|....+. ++.+|+++.+.+
T Consensus 146 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~ 191 (235)
T cd03299 146 VNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE 191 (235)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 688999999876554 4566777766554 777777776664
No 327
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.25 E-value=1.4e+02 Score=26.30 Aligned_cols=39 Identities=15% Similarity=0.349 Sum_probs=25.2
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|+.+.+ +..+++++.+.+
T Consensus 165 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~ 208 (252)
T PRK14256 165 VKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ 208 (252)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 678888888876643 456666766654 456666666654
No 328
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.22 E-value=1.2e+02 Score=26.71 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=22.1
Q ss_pred cCceEEEecccCCcH-----HHHHHHHHHHHHhCCCeEEEecCcc
Q 023832 106 EDPLILVHEKKISNL-----TAVVRVLELALKRQRPLLIVAEDVE 145 (276)
Q Consensus 106 ~~p~Ill~d~~i~~~-----~~i~p~le~i~~~~~pLlIiae~i~ 145 (276)
.+|.++++|.+.+.. +.+..+|....+ ++-+++++.+.+
T Consensus 159 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~ 202 (246)
T PRK14269 159 IKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ 202 (246)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH
Confidence 677777777766543 335555555433 555566555543
No 329
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=20.15 E-value=3.3e+02 Score=27.47 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHHHHhCCCeEEEecCc
Q 023832 119 NLTAVVRVLELALKRQRPLLIVAEDV 144 (276)
Q Consensus 119 ~~~~i~p~le~i~~~~~pLlIiae~i 144 (276)
+..++..+++.+.++++|++++..++
T Consensus 206 ~~~~~~~~~~~L~~AkrPvi~~G~g~ 231 (569)
T PRK08327 206 DPEDIARAAEMLAAAERPVIITWRAG 231 (569)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeccc
Confidence 44678888899989999999987765
No 330
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=20.04 E-value=1.4e+02 Score=26.57 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=30.3
Q ss_pred ecCceEEEecccCCcH-----HHHHHHHHHHHH-hCCCeEEEecCcc
Q 023832 105 LEDPLILVHEKKISNL-----TAVVRVLELALK-RQRPLLIVAEDVE 145 (276)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~i~p~le~i~~-~~~pLlIiae~i~ 145 (276)
+.+|.++++|.+.+.. ..+..++..+.+ .++.++++..|.+
T Consensus 131 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~ 177 (246)
T cd03237 131 SKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDII 177 (246)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3889999999987664 446667776654 3678888887865
No 331
>PRK08350 hypothetical protein; Provisional
Probab=20.02 E-value=2e+02 Score=27.61 Aligned_cols=20 Identities=20% Similarity=0.082 Sum_probs=15.3
Q ss_pred ccCccchHHhHHhHhCCeEE
Q 023832 172 GENRKANMQDLAVLTGGDLI 191 (276)
Q Consensus 172 g~~rk~~LedIA~~TGg~vi 191 (276)
|+.....+-|||+.+|+.-|
T Consensus 291 GETeD~~IAdLaVa~~agqI 310 (341)
T PRK08350 291 YESADEALPHLAVGLRCPAM 310 (341)
T ss_pred CCCcchhHHHHHHHhCCCcc
Confidence 67777888888888887644
Done!