Query 023833
Match_columns 276
No_of_seqs 172 out of 1642
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 13:32:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023833.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023833hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 5.6E-50 1.9E-54 342.4 18.5 241 3-275 6-272 (297)
2 2lck_A Mitochondrial uncouplin 100.0 6.5E-50 2.2E-54 342.9 15.7 234 6-275 3-260 (303)
3 2lck_A Mitochondrial uncouplin 100.0 3.6E-39 1.2E-43 276.1 13.2 189 3-224 103-292 (303)
4 1okc_A ADP, ATP carrier protei 100.0 1.1E-37 3.7E-42 266.3 14.8 185 4-218 112-297 (297)
5 3arc_X Photosystem II PSBX pro 40.3 40 0.0014 18.4 3.3 21 1-21 2-22 (39)
6 3bz1_X Photosystem II PSBX pro 26.6 84 0.0029 18.1 3.3 21 1-21 12-32 (50)
7 2acm_A Mucin-1; auto-catalytic 16.9 22 0.00075 21.4 -0.5 20 45-64 40-59 (66)
8 1rfz_A Hypothetical protein AP 16.3 1.6E+02 0.0054 21.9 3.9 47 203-250 114-160 (168)
9 1y9i_A Low temperature require 15.7 1.9E+02 0.0066 21.7 4.2 47 204-251 113-159 (178)
10 2l5r_A Antimicrobial peptide a 13.7 69 0.0024 15.0 0.9 20 52-72 3-22 (26)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=5.6e-50 Score=342.42 Aligned_cols=241 Identities=17% Similarity=0.222 Sum_probs=204.5
Q ss_pred hHHHHHHHHhHHHHHHHHHhchHHHHHHHHhcccccc---cccccccHHHHHHHHHHhhChhhhcccchHHHHHHhhhhh
Q 023833 3 DALINGLAGAGGGIIAQLITYPLQTVNARQQTERDVK---KEKRKLGTVAQMCQVVKHEGWGRLYGGLTPSIVGTAASQG 79 (276)
Q Consensus 3 ~~~~~~~ag~~a~~~~~~~~~Pld~ik~r~q~~~~~~---~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~ 79 (276)
+.+.++++|++||+++.++++|+|+||+|+|++.... ....|++.++++++|+++||++|||||+.+++++.++..+
T Consensus 6 ~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 85 (297)
T 1okc_A 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQA 85 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHH
Confidence 3578999999999999999999999999999986421 2346899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCcchHHHHHHHHHHHHhHhhhcccHHHHHHHHHhccccccCCCCCCCccccc
Q 023833 80 VYYYFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAALAGCVNVLLTNPIWVVVTRMQTHTKTLKKSKPCRSELTSS 159 (276)
Q Consensus 80 ~~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~i~~Pld~vk~r~q~~~~~~~~~~~~~~~~~~~ 159 (276)
++|.+||.+|+.+...... ..+........+++|++||+++.++++|+|+||+|||++....
T Consensus 86 ~~f~~ye~~k~~~~~~~~~-----~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~------------- 147 (297)
T 1okc_A 86 LNFAFKDKYKQIFLGGVDR-----HKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG------------- 147 (297)
T ss_dssp HHHHHHHHHHHHHHTTCCT-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS-------------
T ss_pred HHHHHHHHHHHHhccccCc-----ccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC-------------
Confidence 9999999999854321100 0001123467889999999999999999999999999984311
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHhhcchhhhccccccccc-cccchhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHH
Q 023833 160 EKSSHATVEPPPFATSHAIQEVYDEAGLWGFWRGVFPTLIM-VSNPSIQFMLYETMLKKIKERRALRKKDNSGVTALEIF 238 (276)
Q Consensus 160 ~~~~~~~~~~~y~s~~~~~~~i~~~~G~~glyrG~~~~~~~-~~~~~~~~~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (276)
.....|.++++++++|+++||++|||||+.++++| +|..+++|.+||.+|+.+.+. .+.+.+..+
T Consensus 148 ------~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--------~~~~~~~~~ 213 (297)
T 1okc_A 148 ------AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--------KNVHIIVSW 213 (297)
T ss_dssp ------TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--------GCSCHHHHH
T ss_pred ------CcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC--------CCccHHHHH
Confidence 22457889999999999999999999999999999 889999999999999976432 235677889
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHhh----------------------ccCeeeeeee
Q 023833 239 LLGALAKLGATIVTYPLLVVKVYENKC----------------------VEGVILFYEV 275 (276)
Q Consensus 239 ~~~~~ag~~a~~lt~P~d~vktr~q~~----------------------~~g~~~fy~~ 275 (276)
++|++||++++++++|+|+||+|||++ +||+.||||+
T Consensus 214 ~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG 272 (297)
T 1okc_A 214 MIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKG 272 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTT
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecc
Confidence 999999999999999999999999975 5789999986
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=6.5e-50 Score=342.85 Aligned_cols=234 Identities=22% Similarity=0.299 Sum_probs=206.1
Q ss_pred HHHHHHhHHHHHHHHHhchHHHHHHHHhccccccc------ccccccHHHHHHHHHHhhChhhhcccchHHHHHHhhhhh
Q 023833 6 INGLAGAGGGIIAQLITYPLQTVNARQQTERDVKK------EKRKLGTVAQMCQVVKHEGWGRLYGGLTPSIVGTAASQG 79 (276)
Q Consensus 6 ~~~~ag~~a~~~~~~~~~Pld~ik~r~q~~~~~~~------~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~ 79 (276)
.++++|++|++++.++++|||+||+|+|++..... ...|++.++++++|+++||+++||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 46899999999999999999999999999875321 246899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCcchHHHHHHHHHHHHhHhhhcccHHHHHHHHHhccccccCCCCCCCccccc
Q 023833 80 VYYYFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAALAGCVNVLLTNPIWVVVTRMQTHTKTLKKSKPCRSELTSS 159 (276)
Q Consensus 80 ~~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~i~~Pld~vk~r~q~~~~~~~~~~~~~~~~~~~ 159 (276)
++|.+||.+|+.+.... ...+....+++|++||+++.++++|+|+||+|||++...
T Consensus 83 i~f~~ye~~k~~~~~~~----------~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~-------------- 138 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGS----------EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA-------------- 138 (303)
T ss_dssp HTTTHHHHHHHHHSCCC----------SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC--------------
T ss_pred HHHHHHHHHHHHHhcCC----------cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc--------------
Confidence 99999999998764210 124678899999999999999999999999999998531
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHhhcchhhhccccccccc-cccchhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHH
Q 023833 160 EKSSHATVEPPPFATSHAIQEVYDEAGLWGFWRGVFPTLIM-VSNPSIQFMLYETMLKKIKERRALRKKDNSGVTALEIF 238 (276)
Q Consensus 160 ~~~~~~~~~~~y~s~~~~~~~i~~~~G~~glyrG~~~~~~~-~~~~~~~~~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (276)
.....|.++++++++|+++||++|||||+.++++| +|..+++|.+||.+|+.+.+.. ....+.+..+
T Consensus 139 ------~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~------~~~~~~~~~~ 206 (303)
T 2lck_A 139 ------GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN------LMTDDLPCHF 206 (303)
T ss_dssp ------CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT------SCCSCHHHHH
T ss_pred ------CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc------CCCCchHHHH
Confidence 12346889999999999999999999999999999 8899999999999999876532 2345677899
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHhh-----------------ccCeeeeeee
Q 023833 239 LLGALAKLGATIVTYPLLVVKVYENKC-----------------VEGVILFYEV 275 (276)
Q Consensus 239 ~~~~~ag~~a~~lt~P~d~vktr~q~~-----------------~~g~~~fy~~ 275 (276)
++|++||++++++++|+|+||+|||++ +||+.||||+
T Consensus 207 ~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG 260 (303)
T 2lck_A 207 TSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKG 260 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSC
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhcc
Confidence 999999999999999999999999975 6899999997
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.6e-39 Score=276.12 Aligned_cols=189 Identities=20% Similarity=0.269 Sum_probs=167.0
Q ss_pred hHHHHHHHHhHHHHHHHHHhchHHHHHHHHhcccccccccccccHHHHHHHHHHhhChhhhcccchHHHHHHhhhhhHHH
Q 023833 3 DALINGLAGAGGGIIAQLITYPLQTVNARQQTERDVKKEKRKLGTVAQMCQVVKHEGWGRLYGGLTPSIVGTAASQGVYY 82 (276)
Q Consensus 3 ~~~~~~~ag~~a~~~~~~~~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~~~f 82 (276)
+.+.++++|++||+++.++++|+|+||+|+|++........|.+.++++++|+++||++|||||+.+++++.++..+++|
T Consensus 103 ~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f 182 (303)
T 2lck_A 103 GIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAEL 182 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999875433446899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCcchHHHHHHHHHHHHhHhhhcccHHHHHHHHHhccccccCCCCCCCcccccccc
Q 023833 83 YFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAALAGCVNVLLTNPIWVVVTRMQTHTKTLKKSKPCRSELTSSEKS 162 (276)
Q Consensus 83 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~i~~Pld~vk~r~q~~~~~~~~~~~~~~~~~~~~~~ 162 (276)
.+||.+|+.+.... ....+....+++|++||+++.++++|+|+||+|||++..
T Consensus 183 ~~ye~~k~~l~~~~---------~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~------------------ 235 (303)
T 2lck_A 183 VTYDLIKDTLLKAN---------LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL------------------ 235 (303)
T ss_dssp HHHHHHHHTTTTTT---------SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS------------------
T ss_pred HHHHHHHHHHHhcc---------CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc------------------
Confidence 99999998765321 123456788999999999999999999999999999732
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcchhhhccccccccc-cccchhHHHHHHHHHHHHHHHHhh
Q 023833 163 SHATVEPPPFATSHAIQEVYDEAGLWGFWRGVFPTLIM-VSNPSIQFMLYETMLKKIKERRAL 224 (276)
Q Consensus 163 ~~~~~~~~y~s~~~~~~~i~~~~G~~glyrG~~~~~~~-~~~~~~~~~~ye~~~~~~~~~~~~ 224 (276)
..|.++++|+++|+++||++|||||+.++++| +|..+++|.+||.+|+.+......
T Consensus 236 ------~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~~~ 292 (303)
T 2lck_A 236 ------GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQS 292 (303)
T ss_dssp ------SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred ------cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccC
Confidence 25889999999999999999999999999999 789999999999999987655443
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.1e-37 Score=266.29 Aligned_cols=185 Identities=18% Similarity=0.274 Sum_probs=158.1
Q ss_pred HHHHHHHHhHHHHHHHHHhchHHHHHHHHhcccccc-cccccccHHHHHHHHHHhhChhhhcccchHHHHHHhhhhhHHH
Q 023833 4 ALINGLAGAGGGIIAQLITYPLQTVNARQQTERDVK-KEKRKLGTVAQMCQVVKHEGWGRLYGGLTPSIVGTAASQGVYY 82 (276)
Q Consensus 4 ~~~~~~ag~~a~~~~~~~~~Pld~ik~r~q~~~~~~-~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~~~f 82 (276)
.+.++++|++|++++.++++|+|+||+|+|++.... ....|.+.++++++|+++||++|||||+.+++++.++..+++|
T Consensus 112 ~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f 191 (297)
T 1okc_A 112 FAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYF 191 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999985422 2346889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCcchHHHHHHHHHHHHhHhhhcccHHHHHHHHHhccccccCCCCCCCcccccccc
Q 023833 83 YFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAALAGCVNVLLTNPIWVVVTRMQTHTKTLKKSKPCRSELTSSEKS 162 (276)
Q Consensus 83 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~i~~Pld~vk~r~q~~~~~~~~~~~~~~~~~~~~~~ 162 (276)
.+||.+|+.+.+. ...+....+++|++||+++.++++|+|+||+|||++....
T Consensus 192 ~~ye~~k~~~~~~-----------~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~---------------- 244 (297)
T 1okc_A 192 GVYDTAKGMLPDP-----------KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRK---------------- 244 (297)
T ss_dssp HHHHHHHHSSCGG-----------GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC----------------
T ss_pred HHHHHHHHHhccC-----------CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCC----------------
Confidence 9999999865321 1235677889999999999999999999999999974311
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcchhhhccccccccccccchhHHHHHHHHHHHH
Q 023833 163 SHATVEPPPFATSHAIQEVYDEAGLWGFWRGVFPTLIMVSNPSIQFMLYETMLKKI 218 (276)
Q Consensus 163 ~~~~~~~~y~s~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~~~ye~~~~~~ 218 (276)
.....|.++++|+++|+++||++|||||+.++++|.+..+++|.+||.+|+++
T Consensus 245 ---~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 245 ---GADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp ---GGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHHHHHHHHHHHHHTC----
T ss_pred ---CCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhhccceeeehHHHHHHhhC
Confidence 12347899999999999999999999999999999667899999999988753
No 5
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=40.28 E-value=40 Score=18.44 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=16.7
Q ss_pred CchHHHHHHHHhHHHHHHHHH
Q 023833 1 MSDALINGLAGAGGGIIAQLI 21 (276)
Q Consensus 1 ~~~~~~~~~ag~~a~~~~~~~ 21 (276)
|++.+.+++.+.++|.+-..+
T Consensus 2 mTpSL~nFl~Sl~aG~vvvv~ 22 (39)
T 3arc_X 2 ITPSLKGFFIGLLSGAVVLGL 22 (39)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHHHHH
Confidence 788899999999998875333
No 6
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=26.60 E-value=84 Score=18.14 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=16.6
Q ss_pred CchHHHHHHHHhHHHHHHHHH
Q 023833 1 MSDALINGLAGAGGGIIAQLI 21 (276)
Q Consensus 1 ~~~~~~~~~ag~~a~~~~~~~ 21 (276)
|++.+.+++.+.++|.+-..+
T Consensus 12 mTpSL~NFl~SlvaG~vVvv~ 32 (50)
T 3bz1_X 12 ITPSLKGFFIGLLSGAVVLGL 32 (50)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 678899999999988875443
No 7
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=16.91 E-value=22 Score=21.40 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=16.9
Q ss_pred ccHHHHHHHHHHhhChhhhc
Q 023833 45 LGTVAQMCQVVKHEGWGRLY 64 (276)
Q Consensus 45 ~~~~~~~~~i~~~~G~~gly 64 (276)
+++...+.+||+++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 56788889999999988876
No 8
>1rfz_A Hypothetical protein APC35681; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.80A {Geobacillus stearothermophilus} SCOP: a.195.1.1
Probab=16.34 E-value=1.6e+02 Score=21.91 Aligned_cols=47 Identities=9% Similarity=-0.060 Sum_probs=29.9
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHHH
Q 023833 203 NPSIQFMLYETMLKKIKERRALRKKDNSGVTALEIFLLGALAKLGATI 250 (276)
Q Consensus 203 ~~~~~~~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~a~~ 250 (276)
..-+.|-.||..|.....+..+. .+..-...+.+.++|.+|++++.+
T Consensus 114 ~gf~~Fr~fDi~KPgpI~~ld~~-~~gg~gimlDDivAgi~A~~~~~l 160 (168)
T 1rfz_A 114 IGFTNYGYIDKQKPGILQYLNDK-STGKCNTFLDDIVGAIAAAASSRL 160 (168)
T ss_dssp THHHHHHHHHHHCCTHHHHHHCS-SSSCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhHHHhhcc-cCCCCcchHHHHHHHHHHHHHHHH
Confidence 34556888888888766654321 122334677788888888776643
No 9
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=15.68 E-value=1.9e+02 Score=21.69 Aligned_cols=47 Identities=9% Similarity=-0.027 Sum_probs=30.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHHHH
Q 023833 204 PSIQFMLYETMLKKIKERRALRKKDNSGVTALEIFLLGALAKLGATIV 251 (276)
Q Consensus 204 ~~~~~~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~a~~l 251 (276)
..+.|-.||..|.....+..+. .+..-...+.++++|.+|++++.++
T Consensus 113 gf~~Fr~fDi~KPgpI~~ld~~-~~gg~gimlDDivAgi~A~~~~~l~ 159 (178)
T 1y9i_A 113 GFTNYGYIDKVKPGILAKLNEH-DGIAVHTFLDDIVGAIAAAAASRLA 159 (178)
T ss_dssp GHHHHHHHHHHCCTHHHHTTCC-CSSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHhhhcc-cCCCCcchHHHHHHHHHHHHHHHHH
Confidence 3456888888888777654211 1122345777888888888766443
No 10
>2l5r_A Antimicrobial peptide alyteserin-1C; alpha helix, antimicrobial protein; NMR {Alytes obstetricans}
Probab=13.71 E-value=69 Score=15.04 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=11.8
Q ss_pred HHHHHhhChhhhcccchHHHH
Q 023833 52 CQVVKHEGWGRLYGGLTPSIV 72 (276)
Q Consensus 52 ~~i~~~~G~~glyrG~~~~l~ 72 (276)
++|++ .|+.+|-+|+.+.+.
T Consensus 3 keifk-aglgslvkgiaahva 22 (26)
T 2l5r_A 3 KEIFK-AGLGSLVKGIAAHVA 22 (26)
T ss_dssp HHHHH-HHHHHHHHHHHHHHC
T ss_pred HHHHH-HhHHHHHHHHHHHHh
Confidence 34444 466777777666543
Done!