Query 023834
Match_columns 276
No_of_seqs 142 out of 393
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:59:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04755 PAP_fibrillin: PAP_fi 100.0 2E-40 4.3E-45 289.1 19.4 194 54-269 2-198 (198)
2 PF14869 DUF4488: Domain of un 70.1 45 0.00098 27.7 8.8 68 100-188 2-71 (133)
3 PF12283 Protein_K: Bacterioph 37.8 50 0.0011 22.9 3.2 36 52-90 5-41 (56)
4 TIGR02116 toxin_Txe_YoeB toxin 32.4 57 0.0012 24.0 3.2 32 74-106 17-49 (80)
5 COG3607 Predicted lactoylgluta 32.2 67 0.0014 26.6 3.7 41 72-112 77-129 (133)
6 PF05973 Gp49: Phage derived p 30.8 1.5E+02 0.0033 22.0 5.4 41 73-113 7-50 (91)
7 PF08212 Lipocalin_2: Lipocali 24.8 1.6E+02 0.0034 23.9 4.9 33 241-274 81-116 (143)
8 PHA00097 K protein K 22.9 1.2E+02 0.0027 20.9 3.1 35 53-90 6-41 (56)
9 PF03076 GP3: Equine arteritis 19.7 77 0.0017 26.1 1.9 16 242-257 123-138 (160)
10 TIGR00053 addiction module tox 18.8 1.1E+02 0.0024 22.7 2.5 32 75-106 23-55 (89)
No 1
>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast
Probab=100.00 E-value=2e-40 Score=289.08 Aligned_cols=194 Identities=32% Similarity=0.567 Sum_probs=150.2
Q ss_pred HHHHHHHHhhhcCCCCCCCCHhhHHHHHHHHHHHHhcCCCC-CCCc-cCCCceEEEEEecCCchHHHHHHhccCCceeec
Q 023834 54 NKKHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCNMGE-PIDL-VKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVG 131 (276)
Q Consensus 54 ~lK~~LL~ai~~t~rG~~as~~~r~~I~~lI~~LE~lnpt~-P~~~-~lL~G~W~L~yTS~~~~~~ll~a~~~lp~~~vg 131 (276)
++|++||+++++++||+.+++++|++|+++|++||++||++ |+++ ++|+|+|+|+|||+.++.++++ .+++|.+.+|
T Consensus 2 ~~K~~Ll~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~-~~~~~~~~~~ 80 (198)
T PF04755_consen 2 DLKQELLQAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQ-RGRLPGVRVG 80 (198)
T ss_pred hHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCcccccc-cccccccccc
Confidence 68999999999999999999999999999999999999999 9987 9999999999999999876654 2466778999
Q ss_pred ceeEEEeeeeCCCCceEEEEEEeCC-CccccccCccEEEEEEEEEEccCceEEEEEEEEEEeeccchHHHHHhhCCccCc
Q 023834 132 QIFQKFECRDKSDGGVICNVVRWSV-PPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILP 210 (276)
Q Consensus 132 ~i~Q~Id~~~~~~~~~~~N~v~~~~-p~l~~~~~G~~~~v~a~~~v~s~~Ri~v~F~~~~v~~~~i~~~l~~ll~~~~lp 210 (276)
++||+||.. ++++.|+|+|.. |.+ +| .+.+.+++++.++.|+.++|+++.++...+. +.++++. .
T Consensus 81 ~v~Q~id~~----~~~~~N~v~~~~~~~~----~~-~~~v~a~~~~~~~~rv~v~f~~~~l~~~~~l---~~~l~~~--~ 146 (198)
T PF04755_consen 81 RVFQTIDAD----NGRVENVVELSGFPLL----EG-SVSVRASLEVRSPRRVEVTFERASLKPPSLL---KGVLGPL--K 146 (198)
T ss_pred ceEEEEECC----CceEEEEEEEeccCce----EE-EEEEEEEEEEccccEEEEEEEeeEEccccee---eccchhh--h
Confidence 999999964 678999999875 443 34 8999999999999999999999999654431 1111100 0
Q ss_pred chhhhHHHHHHHhHhhhcCCCCCCCCCCCCcceEEEEEEecCCeEEEeecCCCcEEEEE
Q 023834 211 RSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFT 269 (276)
Q Consensus 211 ~~~~~~q~l~~~~~~~~~~Pl~~~~pg~~~~~g~l~~TYLDedlRI~Rg~~~G~vFVl~ 269 (276)
..+. .+-......+|++...++. .++|||+||||||||||+||+ +|++|||.
T Consensus 147 ~~~~-----~v~~~~~~~~~~~~~~~~~-~~~g~l~~tYLDedlRI~Rg~-~G~~fVl~ 198 (198)
T PF04755_consen 147 DALN-----NVPRGISDELPVPLPLPGG-SPKGWLDTTYLDEDLRISRGN-KGSLFVLK 198 (198)
T ss_pred hhhh-----hcccccccccccccccCCC-CCceEEEEEEECCCeEEEEcC-CCCEEEeC
Confidence 0000 0001111223443333332 268999999999999999996 99999984
No 2
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=70.10 E-value=45 Score=27.72 Aligned_cols=68 Identities=22% Similarity=0.388 Sum_probs=43.3
Q ss_pred CCCceEEEE-EecCC-chHHHHHHhccCCceeecceeEEEeeeeCCCCceEEEEEEeCCCccccccCccEEEEEEEEEEc
Q 023834 100 KLDGTWRLQ-YTSAP-DVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVV 177 (276)
Q Consensus 100 lL~G~W~L~-yTS~~-~~~~ll~a~~~lp~~~vg~i~Q~Id~~~~~~~~~~~N~v~~~~p~l~~~~~G~~~~v~a~~~v~ 177 (276)
.|.|-|+++ |-+.. +..+ . +..+.++-++. +.+++.|+.-.. . .|+.++..+.|+..
T Consensus 2 ~l~GVWQ~c~~~~~~~~~~g------~---l~~~~~lKilS-----~Dgtf~Ni~~~~--~-----~~aiIt~~GtY~~~ 60 (133)
T PF14869_consen 2 SLQGVWQLCHYVSESPEVPG------K---LKPSNVLKILS-----DDGTFVNITMIP--K-----SGAIITGYGTYEQP 60 (133)
T ss_pred CceEEEEEEEEeecCcccCc------e---EeecccEEEEc-----CCCcEEEEEEeC--C-----CCcEEEEeEEEEEc
Confidence 478999999 44443 2211 1 22344455554 478999998743 2 24688889999999
Q ss_pred cCceEEEEEEE
Q 023834 178 SVRNIYLQFEE 188 (276)
Q Consensus 178 s~~Ri~v~F~~ 188 (276)
++.-.....++
T Consensus 61 sD~~Y~E~IeK 71 (133)
T PF14869_consen 61 SDNIYVESIEK 71 (133)
T ss_pred CCccceeeecc
Confidence 98755544444
No 3
>PF12283 Protein_K: Bacteriophage protein K; InterPro: IPR020962 This family of proteins is found in the microviridae (isometric ssDNA phages) and are approximately 60 amino acids in length. The function of these proteins are unknown. In phi X174 site-directed mutagenesis of gene K produces small plaques on su- hosts. The mutant phage has an identical latent period, but a more reduced burst size than that of the wild-type phi X174. The reduced burst size in the gene K mutant suggests that the gene K protein, although not essential, has a role in increasing infectivity by increasing the burst size three to six fold [].
Probab=37.82 E-value=50 Score=22.90 Aligned_cols=36 Identities=25% Similarity=0.171 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhhcCCC-CCCCCHhhHHHHHHHHHHHHhc
Q 023834 52 LENKKHDLLSTIQGTQR-GQNTNADQRSIIEEALVGLEGC 90 (276)
Q Consensus 52 ~~~lK~~LL~ai~~t~r-G~~as~~~r~~I~~lI~~LE~l 90 (276)
..-+|++||-+....|| |+.+.. ++|...+.+||.+
T Consensus 5 ~tli~qellll~yelnrsgllven---e~i~~~l~~le~l 41 (56)
T PF12283_consen 5 TTLIKQELLLLTYELNRSGLLVEN---EEIQSQLKQLEKL 41 (56)
T ss_pred HHHHHHHHHHHHHHhccccccccc---HHHHHHHHHHHHH
Confidence 34579999999999987 766533 4577888888875
No 4
>TIGR02116 toxin_Txe_YoeB toxin-antitoxin system, toxin component, Txe/YoeB family. The Axe-Txe pair in Enterococcus faecium and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This model describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by matches to TIGR01552 and/or pfam02604.
Probab=32.36 E-value=57 Score=23.95 Aligned_cols=32 Identities=13% Similarity=0.047 Sum_probs=20.7
Q ss_pred HhhHHHHHHHHHHHHhcCCCC-CCCccCCCceEE
Q 023834 74 ADQRSIIEEALVGLEGCNMGE-PIDLVKLDGTWR 106 (276)
Q Consensus 74 ~~~r~~I~~lI~~LE~lnpt~-P~~~~lL~G~W~ 106 (276)
++.+..|.++|++|+ .||.+ ......|.|.|.
T Consensus 17 ~~~~~~i~~~i~~l~-~~P~~~~~~~~~L~G~~~ 49 (80)
T TIGR02116 17 KKLKKKINELIKDVR-RDPFKGKGKPEPLKGDLS 49 (80)
T ss_pred HHHHHHHHHHHHHHH-cCCCCCCCCcccCCCCCC
Confidence 457788999999887 46654 233445666543
No 5
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=32.15 E-value=67 Score=26.64 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=28.9
Q ss_pred CCHhhHHHHHHHHHHHHhcCCCC---CCC--------ccCCCc-eEEEEEecC
Q 023834 72 TNADQRSIIEEALVGLEGCNMGE---PID--------LVKLDG-TWRLQYTSA 112 (276)
Q Consensus 72 as~~~r~~I~~lI~~LE~lnpt~---P~~--------~~lL~G-~W~L~yTS~ 112 (276)
.+..-|++|+++|+.--+.+..+ |.+ ..-++| .|+++|-..
T Consensus 77 ls~~s~eevd~~v~ka~eaGGk~~~~~~d~gfMYg~~fqDpDGh~wE~l~m~~ 129 (133)
T COG3607 77 LSAGSREEVDELVDKALEAGGKPANEPQDEGFMYGRSFQDPDGHVWEFLWMDP 129 (133)
T ss_pred eccCcHHHHHHHHHHHHHcCCCCCCCccccccccceeeeCCCCCeEEEEEeCH
Confidence 45566889999998776666554 343 245677 799999764
No 6
>PF05973 Gp49: Phage derived protein Gp49-like (DUF891); InterPro: IPR009241 This entry consists of several hypothetical viral and bacterial proteins some are annotated as addiction module killer proteins.
Probab=30.81 E-value=1.5e+02 Score=22.02 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=29.9
Q ss_pred CHhhHHHHHHHHHHHHhcCCCC-CCCccCC--CceEEEEEecCC
Q 023834 73 NADQRSIIEEALVGLEGCNMGE-PIDLVKL--DGTWRLQYTSAP 113 (276)
Q Consensus 73 s~~~r~~I~~lI~~LE~lnpt~-P~~~~lL--~G~W~L~yTS~~ 113 (276)
++..+.+|...++.|+..+|.. +-....| +|-|+|......
T Consensus 7 ~~~~~~~i~~~l~~l~~~G~~l~~~~~k~l~~~~i~ElR~~~~~ 50 (91)
T PF05973_consen 7 PDKERAKILAQLERLEEHGPSLGEPLFKHLKGDGIYELRVRGGS 50 (91)
T ss_pred CHHHHHHHHHHHHHHHhcCCccCCCcccccCcCCeEEEEEeecC
Confidence 5677899999999999887543 2222333 699999998765
No 7
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=24.77 E-value=1.6e+02 Score=23.94 Aligned_cols=33 Identities=18% Similarity=0.457 Sum_probs=25.9
Q ss_pred cceEEEEEEecCC---eEEEeecCCCcEEEEEecCCC
Q 023834 241 VGGLYYLSYLDNN---MLLGRAVGGGGVFVFTKAQPL 274 (276)
Q Consensus 241 ~~g~l~~TYLDed---lRI~Rg~~~G~vFVl~R~~~~ 274 (276)
+.+-+.|.|+|.| .-|+-.+ .-.+|||.|...+
T Consensus 81 ~~~~YwVl~~D~dY~~~iv~~~~-~~~~WILsR~p~~ 116 (143)
T PF08212_consen 81 PKGNYWVLYTDYDYSWAIVGSPD-REYLWILSRTPQL 116 (143)
T ss_dssp EEEEEEEEEEBTTSSEEEEEECC-CCEEEEEESSSS-
T ss_pred CCcceEEEEEcCCccEEEEecCC-CCEEEEEeCCCCC
Confidence 4678999999988 5566664 7889999998754
No 8
>PHA00097 K protein K
Probab=22.87 E-value=1.2e+02 Score=20.89 Aligned_cols=35 Identities=23% Similarity=0.143 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhcCCC-CCCCCHhhHHHHHHHHHHHHhc
Q 023834 53 ENKKHDLLSTIQGTQR-GQNTNADQRSIIEEALVGLEGC 90 (276)
Q Consensus 53 ~~lK~~LL~ai~~t~r-G~~as~~~r~~I~~lI~~LE~l 90 (276)
.-++++||-+....|| |+.+. .++|...+.+||.+
T Consensus 6 tli~qelllltyelnrsgllve---neeiqs~lk~le~l 41 (56)
T PHA00097 6 TLILQELLLLTYELNRSGLLVE---NEEIQSQLKKLEKL 41 (56)
T ss_pred HHHHHHHHHHHHhhccccceec---cHHHHHHHHHHHHH
Confidence 4578999999999987 76653 34577777888875
No 9
>PF03076 GP3: Equine arteritis virus GP3; InterPro: IPR004310 This entry contains proteins encoded by ORF3 of Equine arteritis virus. They are possible envelope glcoproteins.
Probab=19.67 E-value=77 Score=26.09 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=13.7
Q ss_pred ceEEEEEEecCCeEEE
Q 023834 242 GGLYYLSYLDNNMLLG 257 (276)
Q Consensus 242 ~g~l~~TYLDedlRI~ 257 (276)
-|.+..+|+|||||+.
T Consensus 123 lg~~sfsfidedlrlh 138 (160)
T PF03076_consen 123 LGQLSFSFIDEDLRLH 138 (160)
T ss_pred cceEEEEEecccceee
Confidence 4778899999999974
No 10
>TIGR00053 addiction module toxin component, YafQ family. This model represents a cluster of eubacterial proteins and a cluster of archaeal proteins, all of which are uncharacterized, from 85 to 102 residues in length, and similar in sequence. These include YafQ, a ribosome-associated endoribonuclease that serves as part of a toxin-antitoxin system, for which DinJ is the antidote component.
Probab=18.84 E-value=1.1e+02 Score=22.70 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHhcCCCC-CCCccCCCceEE
Q 023834 75 DQRSIIEEALVGLEGCNMGE-PIDLVKLDGTWR 106 (276)
Q Consensus 75 ~~r~~I~~lI~~LE~lnpt~-P~~~~lL~G~W~ 106 (276)
.+...|.++|+.|...+|.| ......|.|.|.
T Consensus 23 ~~~~~i~~~i~~l~~~~~~p~~~~~~~L~G~~~ 55 (89)
T TIGR00053 23 KDLKKLLKKMEELINTLPLPEHYKDHPLRGPWK 55 (89)
T ss_pred ccHHHHHHHHHHHHcCCCCCcccCCccCcCCcC
Confidence 34567888888888755554 233446666554
Done!