Query 023834
Match_columns 276
No_of_seqs 142 out of 393
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 13:33:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023834.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023834hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4i95_A Putative uncharacterize 82.8 14 0.0005 29.7 10.4 72 98-189 9-81 (142)
2 4gzv_A Hypothetical protein; A 80.8 18 0.00061 29.2 10.3 70 98-188 9-80 (142)
3 2kvu_A MKL/myocardin-like prot 34.4 69 0.0024 23.0 4.9 43 46-94 25-67 (75)
4 3g5o_B Uncharacterized protein 25.3 72 0.0025 23.4 3.9 34 73-108 34-71 (102)
5 3hty_A Hypothetical protein BT 24.4 1.2E+02 0.0043 22.5 5.0 28 242-271 66-93 (94)
6 2a6s_A Toxin YOEB; YEFM, antit 23.3 1E+02 0.0034 21.1 4.2 20 74-94 21-40 (84)
7 1use_A VAsp, vasodilator-stimu 20.4 1.8E+02 0.006 18.8 4.4 19 47-65 4-22 (45)
8 3oei_C RELK (toxin RV3358); to 18.8 1.2E+02 0.0042 22.4 4.0 35 74-109 33-72 (96)
9 1z8m_A Conserved hypothetical 18.2 1E+02 0.0035 21.2 3.3 17 78-94 25-41 (88)
10 1qbj_A Protein (double-strande 16.0 3E+02 0.01 19.4 5.5 56 54-111 10-73 (81)
No 1
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=82.82 E-value=14 Score=29.66 Aligned_cols=72 Identities=21% Similarity=0.305 Sum_probs=49.6
Q ss_pred ccCCCceEEEEEecCCchHHHHHHhccCCc-eeecceeEEEeeeeCCCCceEEEEEEeCCCccccccCccEEEEEEEEEE
Q 023834 98 LVKLDGTWRLQYTSAPDVLVLFEAAARLPF-FKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDV 176 (276)
Q Consensus 98 ~~lL~G~W~L~yTS~~~~~~ll~a~~~lp~-~~vg~i~Q~Id~~~~~~~~~~~N~v~~~~p~l~~~~~G~~~~v~a~~~v 176 (276)
...|.|-|+|+.-.+... ..|. +.-++.+-++. +.+++.|++-. |. .++.+...++|+.
T Consensus 9 ~~~L~GvWQ~C~y~s~~p--------d~~g~L~psn~lKIlS-----dDgtF~Ni~m~--~~-----~~aiIt~~GtY~~ 68 (142)
T 4i95_A 9 PAHLQGIWQLCHYVSENP--------DIPGVLKPSNTFKVLS-----DDGRIVNFTIR--PG-----TDAIITGYGTYRQ 68 (142)
T ss_dssp CCSCCEEEEEEEEECSST--------TSCCEEEEEEEEEEEC-----TTSEEEEEECC--TT-----SCCEEEEEEEEEE
T ss_pred cccceeEeEEEEEecCCC--------CCceEeccCccEEEEc-----CCCcEEEEEEe--cC-----CCcEEEEeEEEEe
Confidence 357999999987665431 1232 34456676665 57899999876 22 3468899999999
Q ss_pred ccCceEEEEEEEE
Q 023834 177 VSVRNIYLQFEEV 189 (276)
Q Consensus 177 ~s~~Ri~v~F~~~ 189 (276)
.++.......++.
T Consensus 69 ~SD~~Y~E~IeKn 81 (142)
T 4i95_A 69 ISAAAYKESIEKN 81 (142)
T ss_dssp EETTEEEEEEEEE
T ss_pred cCCcceeeeeccc
Confidence 9997766655554
No 2
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=80.76 E-value=18 Score=29.25 Aligned_cols=70 Identities=20% Similarity=0.293 Sum_probs=45.4
Q ss_pred ccCCCceEEEEE-ecCCchHHHHHHhccCCc-eeecceeEEEeeeeCCCCceEEEEEEeCCCccccccCccEEEEEEEEE
Q 023834 98 LVKLDGTWRLQY-TSAPDVLVLFEAAARLPF-FKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFD 175 (276)
Q Consensus 98 ~~lL~G~W~L~y-TS~~~~~~ll~a~~~lp~-~~vg~i~Q~Id~~~~~~~~~~~N~v~~~~p~l~~~~~G~~~~v~a~~~ 175 (276)
..-|.|-|++++ .+... ..|. +..+..+-+|. +.|++.|.+-.. . .++.+...++|+
T Consensus 9 ~~~L~GvWQ~c~y~~~~~---------~~~~~l~~s~~~KIlS-----~DgtF~N~~m~~--~-----~~aiIt~yGtY~ 67 (142)
T 4gzv_A 9 AADLKGIWQLCHYVSESP---------DVPGALKPSNTFKVLS-----DDGRIVNFTIIP--G-----ADAIITGYGTYK 67 (142)
T ss_dssp SCCCCEEEEEEEEEESST---------TSCCEEEEEEEEEEEC-----TTSEEEEEECCT--T-----SCCEEEEEEEEE
T ss_pred cccceEEeEEeeEeecCC---------CCCceEeecCceEEEC-----CCCcEEEEEEeC--C-----CCcEEEEeEEEE
Confidence 468999999884 44322 1121 33455666665 478999998532 2 246788899999
Q ss_pred EccCceEEEEEEE
Q 023834 176 VVSVRNIYLQFEE 188 (276)
Q Consensus 176 v~s~~Ri~v~F~~ 188 (276)
..++.......++
T Consensus 68 l~SD~~Y~E~i~k 80 (142)
T 4gzv_A 68 QLTDDSYKESIEK 80 (142)
T ss_dssp EEETTEEEEEEEE
T ss_pred ecCCCeeeeeecc
Confidence 9999765544443
No 3
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=34.39 E-value=69 Score=22.99 Aligned_cols=43 Identities=12% Similarity=0.147 Sum_probs=30.8
Q ss_pred ccchhhHHHHHHHHHHhhhcCCCCCCCCHhhHHHHHHHHHHHHhcCCCC
Q 023834 46 QVSEFELENKKHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCNMGE 94 (276)
Q Consensus 46 ~~~~~e~~~lK~~LL~ai~~t~rG~~as~~~r~~I~~lI~~LE~lnpt~ 94 (276)
....+.+.+||++|-. ||+.++-.+.+-|+.+.+.++..++.+
T Consensus 25 ~l~klkVaeLK~eLk~------RGL~~sG~KaeLIeRL~~~~~~~~~~~ 67 (75)
T 2kvu_A 25 NLDDMKVAELKQELKL------RSLPVSGTKTELIERLRAYQDQISPVP 67 (75)
T ss_dssp TTTTSCHHHHHHHHHH------TTCCCCSCHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHCcHHHHHHHHHH------cCCCCCCCHHHHHHHHHHHHHccCCCC
Confidence 3677888999997755 677776666666777777777666554
No 4
>3g5o_B Uncharacterized protein RV2866; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=25.32 E-value=72 Score=23.41 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=20.5
Q ss_pred CHhhHHHHHHHH-HHHHhcCCCC---CCCccCCCceEEEE
Q 023834 73 NADQRSIIEEAL-VGLEGCNMGE---PIDLVKLDGTWRLQ 108 (276)
Q Consensus 73 s~~~r~~I~~lI-~~LE~lnpt~---P~~~~lL~G~W~L~ 108 (276)
....+..|.+.| +.|. .||.+ +.. ..+.|.|++.
T Consensus 34 ~~~~~~~I~~~I~~~L~-~~P~~~gk~L~-g~~~g~~r~R 71 (102)
T 3g5o_B 34 PPRILAAVVEFAFGDLS-REPLRVGKPLR-RELAGTFSAR 71 (102)
T ss_dssp CHHHHHHHHHHHTTHHH-HCTTTSSEECC-GGGTTCEEEE
T ss_pred CHHHHHHHHHHHHHHHH-hCcccCCeecc-CCCceEEEEE
Confidence 356678888988 7775 56654 221 2245566654
No 5
>3hty_A Hypothetical protein BT_0869; NP_809782.1, structural genomics, joint cente structural genomics, JCSG; HET: MSE GOL; 1.95A {Bacteroides thetaiotaomicron vpi-5482}
Probab=24.39 E-value=1.2e+02 Score=22.51 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=23.9
Q ss_pred ceEEEEEEecCCeEEEeecCCCcEEEEEec
Q 023834 242 GGLYYLSYLDNNMLLGRAVGGGGVFVFTKA 271 (276)
Q Consensus 242 ~g~l~~TYLDedlRI~Rg~~~G~vFVl~R~ 271 (276)
.-.|+|-+|+.|-.+-.. .|..|+|+|.
T Consensus 66 tdTf~I~~l~~dsL~L~~--~~~~~~Y~r~ 93 (94)
T 3hty_A 66 VDTMDIKRLTADSLVLDN--QGMEIRYAKQ 93 (94)
T ss_dssp EEEEEEEEECSSEEEEEE--TTEEEEEEEC
T ss_pred EEEEEEEecCCceEEEEc--CCeEEEEEec
Confidence 346899999999999954 7999999995
No 6
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=23.30 E-value=1e+02 Score=21.06 Aligned_cols=20 Identities=15% Similarity=-0.056 Sum_probs=14.0
Q ss_pred HhhHHHHHHHHHHHHhcCCCC
Q 023834 74 ADQRSIIEEALVGLEGCNMGE 94 (276)
Q Consensus 74 ~~~r~~I~~lI~~LE~lnpt~ 94 (276)
......|.++|+.|.. ||-+
T Consensus 21 ~~~~~~i~~~i~~l~~-~P~~ 40 (84)
T 2a6s_A 21 KRIVKKINELIKDTRR-TPFE 40 (84)
T ss_dssp HHHHHHHHHHHHHHHH-STTS
T ss_pred HHHHHHHHHHHHHHHh-CCCC
Confidence 3446778889988865 5654
No 7
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=20.44 E-value=1.8e+02 Score=18.80 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=15.2
Q ss_pred cchhhHHHHHHHHHHhhhc
Q 023834 47 VSEFELENKKHDLLSTIQG 65 (276)
Q Consensus 47 ~~~~e~~~lK~~LL~ai~~ 65 (276)
.+..+.+.+|+++|+-+..
T Consensus 4 ~~~~dle~~KqEIL~E~Rk 22 (45)
T 1use_A 4 SDYSDLQRVKQELLEEVKK 22 (45)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 4557889999999988764
No 8
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=18.79 E-value=1.2e+02 Score=22.35 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=21.5
Q ss_pred HhhHHHHHHHHHHHHhcCCCCC-C---Cc-cCCCceEEEEE
Q 023834 74 ADQRSIIEEALVGLEGCNMGEP-I---DL-VKLDGTWRLQY 109 (276)
Q Consensus 74 ~~~r~~I~~lI~~LE~lnpt~P-~---~~-~lL~G~W~L~y 109 (276)
+..+..|.++|++|+. ||-.+ - .+ ..|.|.|+..-
T Consensus 33 k~~~krI~~~I~~l~~-nP~~g~gK~e~Lkg~l~g~~s~RI 72 (96)
T 3oei_C 33 RKTARRITRLIGEIQR-DPFSGIGKPEPLQGELSGYWSRRI 72 (96)
T ss_dssp HHHHHHHHHHHHHHHH-CTTSSTTCCEECCGGGTTCEEEES
T ss_pred HHHHHHHHHHHHHHHh-CCCcCCCchhhcCCCCCCcEEEEC
Confidence 4567889999999874 66431 1 11 23566676544
No 9
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=18.23 E-value=1e+02 Score=21.24 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhcCCCC
Q 023834 78 SIIEEALVGLEGCNMGE 94 (276)
Q Consensus 78 ~~I~~lI~~LE~lnpt~ 94 (276)
..+.++++.|...||-+
T Consensus 25 ~~~~~~i~~l~~~~p~~ 41 (88)
T 1z8m_A 25 SVLNEVILTLRKKEPLD 41 (88)
T ss_dssp HHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHhcCCCCc
Confidence 45788888886546654
No 10
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=15.99 E-value=3e+02 Score=19.35 Aligned_cols=56 Identities=14% Similarity=0.265 Sum_probs=33.6
Q ss_pred HHHHHHHHhhhcCCCCCCCCHhh--------HHHHHHHHHHHHhcCCCCCCCccCCCceEEEEEec
Q 023834 54 NKKHDLLSTIQGTQRGQNTNADQ--------RSIIEEALVGLEGCNMGEPIDLVKLDGTWRLQYTS 111 (276)
Q Consensus 54 ~lK~~LL~ai~~t~rG~~as~~~--------r~~I~~lI~~LE~lnpt~P~~~~lL~G~W~L~yTS 111 (276)
+..+++|+++...+-|-.++..+ +..|+..+..||..+--.-. ..=.|.|.+.-..
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~--g~~~~~W~i~~~~ 73 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE--AGTPPLWKIAVST 73 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--SSSSCEEEEC---
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec--CCCCCeeEEeCcH
Confidence 45677888888765444333222 56899999999997633211 1112899987554
Done!