Query 023834
Match_columns 276
No_of_seqs 142 out of 393
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 13:33:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023834.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023834hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gyc31 a.108.1.1 (3:2-48) Rib 22.4 47 0.0034 20.0 3.5 28 56-92 3-30 (47)
2 d2gu3a1 d.17.1.6 (A:99-161) Un 19.3 23 0.0017 22.9 1.7 14 242-255 31-44 (63)
3 d1mu2a2 e.8.1.2 (A:3-429) HIV- 17.4 47 0.0034 29.1 3.9 41 70-110 22-74 (427)
4 d2ywqa1 d.204.1.1 (A:1-95) Rib 15.3 39 0.0029 22.6 2.3 28 66-93 7-34 (95)
5 d2q22a1 d.365.1.1 (A:8-138) Un 12.8 1.8E+02 0.013 21.0 5.6 55 47-103 23-81 (131)
6 d1imua_ d.204.1.1 (A:) Ribosom 11.5 1.2E+02 0.0087 20.4 4.1 28 66-93 6-33 (107)
7 d2bkfa1 d.15.2.2 (A:1-85) Next 10.6 54 0.004 22.3 1.7 9 245-253 44-52 (85)
8 d2dk8a1 a.4.5.85 (A:8-75) DNA- 10.3 1.9E+02 0.014 18.6 4.3 21 50-70 3-23 (68)
9 d1wmia1 d.298.1.2 (A:1-88) Hyp 9.9 90 0.0065 20.3 2.7 21 73-94 19-39 (88)
10 d1wzaa1 b.71.1.1 (A:437-515) B 9.9 62 0.0045 20.8 1.7 19 95-113 34-52 (79)
No 1
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=22.35 E-value=47 Score=20.04 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=21.9
Q ss_pred HHHHHHhhhcCCCCCCCCHhhHHHHHHHHHHHHhcCC
Q 023834 56 KHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCNM 92 (276)
Q Consensus 56 K~~LL~ai~~t~rG~~as~~~r~~I~~lI~~LE~lnp 92 (276)
|+++|++|+.-. --+|.++|..+|..-.
T Consensus 3 ke~Ileaia~MS---------VmdvveLi~amEEKFG 30 (47)
T d2gyc31 3 KDQIIEAVAAMS---------VMDVVELISAMEEKFG 30 (47)
T ss_dssp HHHHHHHHHHSC---------HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhh---------HHHHHHHHHHHHHHhC
Confidence 889999998652 3568899999987644
No 2
>d2gu3a1 d.17.1.6 (A:99-161) Uncharacterized protein YpmB {Bacillus subtilis [TaxId: 1423]}
Probab=19.32 E-value=23 Score=22.87 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=10.8
Q ss_pred ceEEEEEEecCCeE
Q 023834 242 GGLYYLSYLDNNML 255 (276)
Q Consensus 242 ~g~l~~TYLDedlR 255 (276)
.-.|++||+|++=|
T Consensus 31 ~pvWEVtY~~~~~~ 44 (63)
T d2gu3a1 31 VLLWEVTYLDKEGQ 44 (63)
T ss_dssp EEEEEEEEECTTSC
T ss_pred EEEEEEEEEeCCCC
Confidence 45799999998643
No 3
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=17.36 E-value=47 Score=29.07 Aligned_cols=41 Identities=12% Similarity=0.200 Sum_probs=26.2
Q ss_pred CCCCHhhHHHHHHHHHHHHhcCCC-----C-CCCccCC------CceEEEEEe
Q 023834 70 QNTNADQRSIIEEALVGLEGCNMG-----E-PIDLVKL------DGTWRLQYT 110 (276)
Q Consensus 70 ~~as~~~r~~I~~lI~~LE~lnpt-----~-P~~~~lL------~G~W~L~yT 110 (276)
...++++.+++.+.|++|+..+-- . |-.++.+ .|+||++--
T Consensus 22 ~pl~~ek~~al~~~i~ell~~G~I~~~ps~Sp~~sPvf~V~KKd~gk~Rl~vD 74 (427)
T d1mu2a2 22 WPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLID 74 (427)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTSEEECCTTCCCBBCEEECCCCC----CEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCeEEeCCCCCcCcCceEEEEcCCCCCcEEEEc
Confidence 356899999999999999998632 2 3333332 489999853
No 4
>d2ywqa1 d.204.1.1 (A:1-95) Ribosome binding protein Y (YfiA homologue) {Thermus thermophilus [TaxId: 274]}
Probab=15.35 E-value=39 Score=22.59 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=24.4
Q ss_pred CCCCCCCCHhhHHHHHHHHHHHHhcCCC
Q 023834 66 TQRGQNTNADQRSIIEEALVGLEGCNMG 93 (276)
Q Consensus 66 t~rG~~as~~~r~~I~~lI~~LE~lnpt 93 (276)
++|++..|+.-++.|++.++.|+...+.
T Consensus 7 tgr~~~lt~al~~~ve~kl~kL~k~~~~ 34 (95)
T d2ywqa1 7 IGRNLEITDAIRDYVEKKLARLDRYQDG 34 (95)
T ss_dssp EEETSCCCHHHHHHHHHHHHGGGGSCSS
T ss_pred EEECCccCHHHHHHHHHHHHHHHHhCCC
Confidence 4678899999999999999999998654
No 5
>d2q22a1 d.365.1.1 (A:8-138) Uncharacterized protein Ava3019 {Anabaena variabilis [TaxId: 1172]}
Probab=12.77 E-value=1.8e+02 Score=21.00 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=34.6
Q ss_pred cchhhHHHHHHHHHHhhhcCCC---CCCCCHhhHHHHHHHHHHHHhcCCCC-CCCccCCCc
Q 023834 47 VSEFELENKKHDLLSTIQGTQR---GQNTNADQRSIIEEALVGLEGCNMGE-PIDLVKLDG 103 (276)
Q Consensus 47 ~~~~e~~~lK~~LL~ai~~t~r---G~~as~~~r~~I~~lI~~LE~lnpt~-P~~~~lL~G 103 (276)
-+..+++.++++|...+...+. |+.|..++ ++ .+++.++++.-.-+ +.+.+..+|
T Consensus 23 Ls~~q~~~L~~eL~~~~~~adw~tiGImA~s~~-~A-i~ALrs~~~~~~~~~~~d~~~~~G 81 (131)
T d2q22a1 23 LKPSEKESVRRALILITKLSDYQILGICADTAD-EG-LLAMKTYSHALGYEVPIDLPVVEG 81 (131)
T ss_dssp CCHHHHHHHHHHHHHHHHTSSEEEEEEEESSHH-HH-HHHHHHHHHHTTCCCC-CCCCCSS
T ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCHH-HH-HHHHHHHHHHhCCCccCCCCCCCC
Confidence 6677899999999999999875 77776553 33 34444555444333 444433344
No 6
>d1imua_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue) {Haemophilus influenzae [TaxId: 727]}
Probab=11.49 E-value=1.2e+02 Score=20.42 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=24.5
Q ss_pred CCCCCCCCHhhHHHHHHHHHHHHhcCCC
Q 023834 66 TQRGQNTNADQRSIIEEALVGLEGCNMG 93 (276)
Q Consensus 66 t~rG~~as~~~r~~I~~lI~~LE~lnpt 93 (276)
+.+++..|+.-++.|++.++.|+...+.
T Consensus 6 ~~r~~~lt~al~~~i~~kl~kl~k~~~~ 33 (107)
T d1imua_ 6 TSKQMDITPAIREHLEERLAKLGKWQTQ 33 (107)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHHHTSSCC
T ss_pred EEEcCcCCHHHHHHHHHHHHHHHhhCCC
Confidence 5688999999999999999999997644
No 7
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.57 E-value=54 Score=22.26 Aligned_cols=9 Identities=33% Similarity=0.696 Sum_probs=8.1
Q ss_pred EEEEEecCC
Q 023834 245 YYLSYLDNN 253 (276)
Q Consensus 245 l~~TYLDed 253 (276)
+.+.|+|+|
T Consensus 44 ~~lkY~Ddd 52 (85)
T d2bkfa1 44 IQIKYLDEE 52 (85)
T ss_dssp EEEEEECTT
T ss_pred ceEEEEcCC
Confidence 789999986
No 8
>d2dk8a1 a.4.5.85 (A:8-75) DNA-directed RNA polymerase III subunit RPC6, RPO3F {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.29 E-value=1.9e+02 Score=18.61 Aligned_cols=21 Identities=5% Similarity=0.060 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHhhhcCCCCC
Q 023834 50 FELENKKHDLLSTIQGTQRGQ 70 (276)
Q Consensus 50 ~e~~~lK~~LL~ai~~t~rG~ 70 (276)
+|..++-+++|+++.+...|+
T Consensus 3 ~~~~~ie~~Ilel~k~~P~Gi 23 (68)
T d2dk8a1 3 ADPVEIENRIIELCHQFPHGI 23 (68)
T ss_dssp SCHHHHHHHHHHHHHHCSSCE
T ss_pred ccHHhHHHHHHHHHHhCCCCC
Confidence 456678899999999998887
No 9
>d1wmia1 d.298.1.2 (A:1-88) Hypothetical protein PHS013 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=9.90 E-value=90 Score=20.32 Aligned_cols=21 Identities=14% Similarity=-0.260 Sum_probs=15.7
Q ss_pred CHhhHHHHHHHHHHHHhcCCCC
Q 023834 73 NADQRSIIEEALVGLEGCNMGE 94 (276)
Q Consensus 73 s~~~r~~I~~lI~~LE~lnpt~ 94 (276)
.+..+..|.+.++.|+. ||.+
T Consensus 19 ~~~~~~~I~~~l~~L~~-~P~~ 39 (88)
T d1wmia1 19 PKAHYRRFLEFRDILEY-EPVP 39 (88)
T ss_dssp CHHHHHHHHHHHHHHTT-CSCC
T ss_pred CHHHHHHHHHHHHHHHh-CcCc
Confidence 46678889999988865 6655
No 10
>d1wzaa1 b.71.1.1 (A:437-515) Bacterial alpha-Amylase {Halothermothrix orenii [TaxId: 31909]}
Probab=9.90 E-value=62 Score=20.76 Aligned_cols=19 Identities=26% Similarity=0.719 Sum_probs=14.4
Q ss_pred CCCccCCCceEEEEEecCC
Q 023834 95 PIDLVKLDGTWRLQYTSAP 113 (276)
Q Consensus 95 P~~~~lL~G~W~L~yTS~~ 113 (276)
|.....-+|.|.|+|.|..
T Consensus 34 pvkikvasgnwtllfnsgd 52 (79)
T d1wzaa1 34 PVKIKVASGNWTLLFNSGD 52 (79)
T ss_dssp CEEEEEESSCEEEEEESSS
T ss_pred cEEEEEecCcEEEEEccCC
Confidence 4444566899999999874
Done!