BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023835
         (276 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
           Decarboxylase
          Length = 343

 Score = 28.9 bits (63), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 69  LTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCAC 113
           L LA+  GA ++      + +G  +VH     Y+GH NP  P AC
Sbjct: 126 LGLAKRVGARLL-LASTSEVYGDPEVHPQSEDYWGHVNPIGPRAC 169


>pdb|4EF7|A Chain A, Udp-Xylose Synthase
 pdb|4EF7|B Chain B, Udp-Xylose Synthase
 pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
 pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
          Length = 337

 Score = 28.9 bits (63), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 69  LTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCAC 113
           L LA+  GA ++      + +G  +VH     Y+GH NP  P AC
Sbjct: 104 LGLAKRVGARLL-LASTSEVYGDPEVHPQSEDYWGHVNPIGPRAC 147


>pdb|3RNL|A Chain A, Crystal Structure Of Sulfotransferase From
           Alicyclobacillus Acidocaldarius
          Length = 311

 Score = 28.9 bits (63), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 62  LKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHI 96
           ++ H  PL   R  G +  +  +YLD FG+ +V +
Sbjct: 151 IRQHYEPLWYYRAVGLYAAQVKRYLDVFGREQVKV 185


>pdb|3BIY|A Chain A, Crystal Structure Of P300 Histone Acetyltransferase Domain
           In Complex With A Bisubstrate Inhibitor, Lys-Coa
          Length = 380

 Score = 27.7 bits (60), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 51  KRRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHISGCP------YFGH 104
           +RR + ++L  +   +P           +I +L+Y+ + G T  HI  CP      Y  H
Sbjct: 104 QRRVYISYLDSVHFFRPKCLRTAVYHEILIGYLEYVKKLGYTTGHIWACPPSEGDDYIFH 163

Query: 105 PNPP 108
            +PP
Sbjct: 164 CHPP 167


>pdb|2QYG|A Chain A, Crystal Structure Of A Rubisco-Like Protein Rlp2 From
           Rhodopseudomonas Palustris
 pdb|2QYG|B Chain B, Crystal Structure Of A Rubisco-Like Protein Rlp2 From
           Rhodopseudomonas Palustris
 pdb|2QYG|C Chain C, Crystal Structure Of A Rubisco-Like Protein Rlp2 From
           Rhodopseudomonas Palustris
 pdb|2QYG|D Chain D, Crystal Structure Of A Rubisco-Like Protein Rlp2 From
           Rhodopseudomonas Palustris
          Length = 452

 Score = 27.3 bits (59), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 9/53 (16%)

Query: 96  ISGCPYFGHPNPPAPCACPLKQAWGSLDALI---------GRLRAAYEENGGR 139
           + G   FGHP  PA  A  ++QAW ++ A I           L AA    GGR
Sbjct: 400 VPGRGVFGHPMGPAAGATSIRQAWDAIAAGIPVPDHAASHPELAAALRAFGGR 452


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,009,371
Number of Sequences: 62578
Number of extensions: 206498
Number of successful extensions: 367
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 363
Number of HSP's gapped (non-prelim): 5
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)