BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023835
         (276 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7ZAM3|XERD_OCEIH Tyrosine recombinase XerD OS=Oceanobacillus iheyensis (strain DSM
          14371 / JCM 11309 / KCTC 3954 / HTE831) GN=xerD PE=3
          SV=1
          Length = 297

 Score = 31.6 bits (70), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 24/46 (52%)

Query: 52 RRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHIS 97
          +RD   +LQY+K+H    T  + S   ++ FL  L   GK+   IS
Sbjct: 28 KRDLTNYLQYMKDHDKTATWDKISRTDIMGFLYMLKDQGKSTATIS 73


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.125    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,719,040
Number of Sequences: 539616
Number of extensions: 4162867
Number of successful extensions: 26593
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 137
Number of HSP's that attempted gapping in prelim test: 22429
Number of HSP's gapped (non-prelim): 3427
length of query: 276
length of database: 191,569,459
effective HSP length: 116
effective length of query: 160
effective length of database: 128,974,003
effective search space: 20635840480
effective search space used: 20635840480
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)