Query 023835
Match_columns 276
No_of_seqs 76 out of 78
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 13:34:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023835.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023835hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xo0_A Recombinase CRE; CRE re 92.2 0.3 1E-05 38.5 6.1 71 49-147 24-95 (324)
2 3nrw_A Phage integrase/site-sp 81.7 4.7 0.00016 28.7 6.4 69 51-146 32-102 (117)
3 1a0p_A Site-specific recombina 79.8 4.4 0.00015 31.3 6.2 70 49-146 25-96 (290)
4 2khq_A Integrase; all-alpha, s 74.1 7.8 0.00027 26.2 5.5 63 53-146 30-94 (110)
5 2oxo_A Integrase; DNA-binding 70.8 11 0.00039 24.1 5.5 63 52-146 28-93 (103)
6 2kkp_A Phage integrase; SAM-li 65.0 9.6 0.00033 25.9 4.4 53 68-146 47-101 (117)
7 2ols_A Phosphoenolpyruvate syn 64.9 5.5 0.00019 39.5 4.3 39 126-164 561-629 (794)
8 2kkv_A Integrase; protein stru 64.5 28 0.00097 24.1 6.9 61 58-146 35-98 (121)
9 2kiw_A INT protein; alpha, str 61.4 34 0.0012 23.0 6.7 50 69-146 39-91 (111)
10 2eqe_A Tumor necrosis factor, 60.3 4.5 0.00015 28.9 2.0 26 87-112 11-36 (48)
11 2x0s_A Pyruvate phosphate diki 60.1 9.6 0.00033 38.6 5.1 24 141-164 683-709 (913)
12 2kj8_A Putative prophage CPS-5 59.8 27 0.00091 24.3 6.0 51 69-146 45-97 (118)
13 2kd1_A DNA integration/recombi 58.7 20 0.00068 24.5 5.1 52 68-146 45-99 (118)
14 2xz9_A Phosphoenolpyruvate-pro 58.3 15 0.00052 32.7 5.6 34 123-156 62-117 (324)
15 2key_A Putative phage integras 57.6 6.7 0.00023 26.8 2.5 51 69-146 47-101 (112)
16 1z19_A Integrase; protein-DNA 56.4 17 0.00059 28.0 4.9 65 51-146 27-93 (283)
17 2zxj_A Transcriptional regulat 55.8 5.1 0.00017 30.9 1.8 21 121-141 76-96 (120)
18 3zq7_A KDP operon transcriptio 52.7 6.9 0.00023 27.8 2.0 21 120-140 67-87 (102)
19 1tac_A TAT protein; transcript 52.4 10 0.00034 29.7 3.0 15 161-175 39-53 (86)
20 2z9m_A Response regulator YYCF 49.1 7.7 0.00026 28.7 1.8 21 120-140 75-95 (120)
21 1vbg_A Pyruvate,orthophosphate 45.9 17 0.00059 36.9 4.3 26 140-165 662-690 (876)
22 2wqd_A Phosphoenolpyruvate-pro 44.4 27 0.00092 33.8 5.2 43 122-164 312-378 (572)
23 2hwg_A Phosphoenolpyruvate-pro 42.2 24 0.00083 34.1 4.5 34 122-155 310-365 (575)
24 3mi9_C Protein TAT; P-TEFB, HI 41.8 7 0.00024 30.6 0.6 16 160-175 38-53 (86)
25 1kbl_A PPDK, pyruvate phosphat 40.8 19 0.00067 36.5 3.8 26 140-165 655-683 (873)
26 3rjp_A COVR; winged helix-turn 39.8 14 0.00049 25.9 1.9 18 120-137 61-78 (96)
27 1h6z_A Pyruvate phosphate diki 38.5 26 0.00088 36.1 4.3 37 121-164 670-709 (913)
28 2khv_A Phage integrase; soluti 37.5 69 0.0024 21.8 5.2 51 67-146 40-94 (106)
29 2kj5_A Phage integrase; GFT PS 37.2 47 0.0016 22.5 4.2 49 70-146 47-98 (116)
30 2kj9_A Integrase; DNA_BRE_C su 33.8 58 0.002 22.9 4.4 49 70-145 51-101 (118)
31 2k4j_A Putative transcriptiona 33.1 31 0.0011 25.6 3.0 21 119-139 79-99 (115)
32 3lys_A Prophage PI2 protein 01 32.1 1.2E+02 0.0042 20.7 6.5 61 55-146 36-98 (112)
33 2lpy_A Matrix protein P10; GAG 30.6 2.2E+02 0.0074 23.1 7.7 70 54-147 9-78 (124)
34 2hqn_A Putative transcriptiona 30.5 23 0.00077 25.5 1.8 21 119-139 67-87 (109)
35 1z1b_A Integrase; protein-DNA 30.3 71 0.0024 25.8 4.8 62 54-146 103-166 (356)
36 1opc_A OMPR, OMPRC; transcript 30.2 21 0.00073 25.6 1.6 20 120-139 70-89 (110)
37 3qfs_A CPR, P450R, NADPH--cyto 28.6 38 0.0013 31.4 3.4 45 75-119 108-152 (458)
38 2a25_A Ubiquitin ligase SIAH1; 28.4 12 0.0004 30.8 -0.1 35 90-131 23-61 (193)
39 3a2a_A Voltage-gated hydrogen 26.5 28 0.00096 25.6 1.6 22 122-143 37-58 (58)
40 1gxq_A PHOB, phosphate regulon 26.3 34 0.0012 24.5 2.1 20 119-138 69-88 (106)
41 2pjp_A Selenocysteine-specific 26.0 28 0.00096 26.0 1.6 38 55-93 68-111 (121)
42 2kob_A Uncharacterized protein 25.8 73 0.0025 21.0 3.6 29 118-146 62-92 (108)
43 2pk2_A Cyclin-T1, protein TAT; 25.7 15 0.0005 32.9 0.0 35 136-179 308-347 (358)
44 1h1j_S THO1 protein; SAP domai 25.3 49 0.0017 23.0 2.6 26 119-144 25-50 (51)
45 2hwv_A DNA-binding response re 24.3 32 0.0011 25.7 1.7 20 120-139 82-101 (121)
46 2kzy_A ZNF216-A20, zfand5 prot 24.3 32 0.0011 25.3 1.6 21 93-113 14-34 (62)
47 3qe2_A CPR, P450R, NADPH--cyto 23.9 51 0.0017 31.3 3.3 46 75-120 268-313 (618)
48 2e1f_A Werner syndrome ATP-dep 23.6 51 0.0017 25.0 2.7 23 147-169 14-36 (103)
49 2dkz_A Hypothetical protein LO 22.0 45 0.0015 25.8 2.1 20 66-85 10-29 (84)
50 2l4d_A SCO1/SENC family protei 21.6 43 0.0015 22.9 1.8 24 65-88 75-98 (110)
51 2e8o_A SAM domain and HD domai 20.8 59 0.002 24.1 2.5 20 66-85 22-41 (103)
52 4a8e_A XER A, probable tyrosin 20.6 1.3E+02 0.0044 23.2 4.5 51 52-137 34-84 (292)
53 3q9v_A DNA-binding response re 20.5 67 0.0023 24.6 2.8 19 120-138 99-117 (133)
No 1
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...
Probab=92.21 E-value=0.3 Score=38.50 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=52.8
Q ss_pred hhhhhhHHHHHHHHHhCCCCcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHH
Q 023835 49 SQKRRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGR 128 (276)
Q Consensus 49 sQKRRDWnTF~QyL~NhrPPlsLs~CSgaHVleFLryLDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGR 128 (276)
.+-+++|+.|..|+..+. +.+...+..||.+|+.++-+.| .+..++...+..
T Consensus 24 ~~y~~~l~~~~~~~~~~~--~~~~~i~~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~ 75 (324)
T 1xo0_A 24 KMLLSVCRSWAAWCKLNN--RKWFPAEPEDVRDYLLYLQARG--------------------------LAVKTIQQHLGQ 75 (324)
T ss_dssp HHHHHHHHHHHHHHHHHT--CCCSSCCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC--CCCCCCCHHHHHHHHHHHHhcC--------------------------cCHHHHHHHHHH
Confidence 344678999999998763 2455678999999999875322 355788999999
Q ss_pred HHHHHHHhCCC-CCCCCccc
Q 023835 129 LRAAYEENGGR-PESNPFGA 147 (276)
Q Consensus 129 LRAAfEE~GG~-PEsNPFaA 147 (276)
|++.|+-.+.. +..||+..
T Consensus 76 l~~~~~~~~~~~~~~np~~~ 95 (324)
T 1xo0_A 76 LNMLHRRSGLPRPSDSNAVS 95 (324)
T ss_dssp HHHHHHHHTSCCGGGSHHHH
T ss_pred HHHHHHHcCCCCCCcCHHHH
Confidence 99999988653 35688754
No 2
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=81.65 E-value=4.7 Score=28.67 Aligned_cols=69 Identities=10% Similarity=0.072 Sum_probs=48.5
Q ss_pred hhhhHHHHHHHHHhCCCCcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHH
Q 023835 51 KRRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLR 130 (276)
Q Consensus 51 KRRDWnTF~QyL~NhrPPlsLs~CSgaHVleFLryLDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLR 130 (276)
-+++++.|..||.... -..+...+..||.+|+.|+-.. ..+..|+-..+.-||
T Consensus 32 Y~~~l~~f~~~l~~~~-~~~l~~it~~~i~~y~~~l~~~--------------------------~~s~~Ti~~~ls~lr 84 (117)
T 3nrw_A 32 FRYRLKHFVEWAEERD-ITAMRELTGWKLDEYETFRRGS--------------------------DVSPATLNGEMQTLK 84 (117)
T ss_dssp HHHHHHHHHHHHHHTT-CCSGGGCCHHHHHHHHHHHHTS--------------------------SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CCChHHCCHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHH
Confidence 3578889999997642 1256677899999999987431 134567888888888
Q ss_pred HHHHHh--CCCCCCCCcc
Q 023835 131 AAYEEN--GGRPESNPFG 146 (276)
Q Consensus 131 AAfEE~--GG~PEsNPFa 146 (276)
+.|.-. -|--+.||+.
T Consensus 85 ~f~~~l~~~g~i~~nP~~ 102 (117)
T 3nrw_A 85 NWLEYLARIDVVDEDLPE 102 (117)
T ss_dssp HHHHHHHHTTSSCTTSGG
T ss_pred HHHHHHHHcCCcccCHHH
Confidence 888743 2445688875
No 3
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=79.81 E-value=4.4 Score=31.35 Aligned_cols=70 Identities=20% Similarity=0.190 Sum_probs=48.3
Q ss_pred hhhhhhHHHHHHHHHhCCCCcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHH
Q 023835 49 SQKRRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGR 128 (276)
Q Consensus 49 sQKRRDWnTF~QyL~NhrPPlsLs~CSgaHVleFLryLDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGR 128 (276)
..-++.++.|..|+... .+.+..-+..||.+|+.++-.. ..+..++...+.-
T Consensus 25 ~~y~~~l~~~~~~~~~~--~~~~~~i~~~~i~~~~~~l~~~--------------------------~~s~~t~~~~~~~ 76 (290)
T 1a0p_A 25 NAYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERLEG--------------------------GYKATSSARLLSA 76 (290)
T ss_dssp HHHHHHHHHHHHHHHHT--SCCTTTCCHHHHHHHHHSCC---------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--CCChhhCCHHHHHHHHHHHHhc--------------------------CCCHHHHHHHHHH
Confidence 34457788899999887 3467778899999999885321 1245678889999
Q ss_pred HHHHHHHhC--CCCCCCCcc
Q 023835 129 LRAAYEENG--GRPESNPFG 146 (276)
Q Consensus 129 LRAAfEE~G--G~PEsNPFa 146 (276)
|+++|+..- +..+.|||.
T Consensus 77 l~~~~~~~~~~~~i~~np~~ 96 (290)
T 1a0p_A 77 VRRLFQYLYREKFREDDPSA 96 (290)
T ss_dssp HHHHHHHHHHTTSSSSCTTS
T ss_pred HHHHHHHHHhCCCccCChhh
Confidence 999988542 345678985
No 4
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=74.06 E-value=7.8 Score=26.16 Aligned_cols=63 Identities=14% Similarity=0.245 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHhCCCCcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHH
Q 023835 53 RDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAA 132 (276)
Q Consensus 53 RDWnTF~QyL~NhrPPlsLs~CSgaHVleFLryLDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRAA 132 (276)
+.++.|..|+.+ +.|..-+..||.+|+.++.+ +.+..++..++..||++
T Consensus 30 ~~~~~~~~~~g~----~~l~~it~~~i~~~~~~l~~---------------------------~~s~~t~~~~~~~l~~~ 78 (110)
T 2khq_A 30 SAYKHIKDHFRH----KLLKDIKRTEYQKFLNEYGL---------------------------THSYETIRKLNSYIRNA 78 (110)
T ss_dssp HHHHHHHHHCSS----CBGGGCCHHHHHHHHHHHHH---------------------------HSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCc----CCHhhCCHHHHHHHHHHHHH---------------------------HhhHHHHHHHHHHHHHH
Confidence 445557777753 45667789999999988631 12456888999999999
Q ss_pred HHHh--CCCCCCCCcc
Q 023835 133 YEEN--GGRPESNPFG 146 (276)
Q Consensus 133 fEE~--GG~PEsNPFa 146 (276)
|+-. -|--+.||+.
T Consensus 79 ~~~a~~~~~i~~NP~~ 94 (110)
T 2khq_A 79 FDDAIHEGYVIKNPTY 94 (110)
T ss_dssp HHHHHHTTCCCCCGGG
T ss_pred HHHHHHCCCcccCccc
Confidence 9742 1334689984
No 5
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=70.75 E-value=11 Score=24.14 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHhCCCCcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHH
Q 023835 52 RRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRA 131 (276)
Q Consensus 52 RRDWnTF~QyL~NhrPPlsLs~CSgaHVleFLryLDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRA 131 (276)
+..++.|..|+.+ +.|..-+..||.+|+.++...| +..++...+..||+
T Consensus 28 ~~~~~~~~~~~g~----~~l~~it~~~i~~~~~~l~~~~---------------------------~~~t~~~~~~~l~~ 76 (103)
T 2oxo_A 28 MSKIKAIRRGLPD----APLEDITTKEIAAMLNGYIDEG---------------------------KAASAKLIRSTLSD 76 (103)
T ss_dssp HHHHHHHHHHSCS----CBGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc----CchhhCCHHHHHHHHHHHHHCC---------------------------CHHHHHHHHHHHHH
Confidence 3445556666643 4566778999999998864211 24578889999999
Q ss_pred HHHH---hCCCCCCCCcc
Q 023835 132 AYEE---NGGRPESNPFG 146 (276)
Q Consensus 132 AfEE---~GG~PEsNPFa 146 (276)
+|+- .|. -+.||+.
T Consensus 77 ~~~~a~~~~~-i~~nP~~ 93 (103)
T 2oxo_A 77 AFREAIAEGH-ITTNHVA 93 (103)
T ss_dssp HHHHHHHTTS-CSSCTTC
T ss_pred HHHHHHHcCC-CCCChHh
Confidence 9874 344 4579985
No 6
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=64.97 E-value=9.6 Score=25.88 Aligned_cols=53 Identities=13% Similarity=0.038 Sum_probs=37.5
Q ss_pred CcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHHhC--CCCCCCCc
Q 023835 68 PLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAYEENG--GRPESNPF 145 (276)
Q Consensus 68 PlsLs~CSgaHVleFLryLDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRAAfEE~G--G~PEsNPF 145 (276)
-+.|..-+..||.+|+.++-.. ..+..++...+..||++|+-.= |--+.||+
T Consensus 47 ~~~l~~It~~~i~~~~~~l~~~--------------------------~~s~~t~~~~~~~l~~~~~~A~~~~~i~~nP~ 100 (117)
T 2kkp_A 47 SIPLKKLQPADIQRLYASKLES--------------------------GLSPTRVRYIHVVLHEAMSQARESGLLLQNPT 100 (117)
T ss_dssp TSCTTTCCHHHHHHHHHHHHHT--------------------------TCCHHHHHHHHHHHHHHHHHHHTTTSCSSCGG
T ss_pred ceEHHHCCHHHHHHHHHHHHHc--------------------------CCCHHHHHHHHHHHHHHHHHHHHCCCcccCcc
Confidence 3456777899999999886421 1245688899999999998531 23457998
Q ss_pred c
Q 023835 146 G 146 (276)
Q Consensus 146 a 146 (276)
.
T Consensus 101 ~ 101 (117)
T 2kkp_A 101 E 101 (117)
T ss_dssp G
T ss_pred c
Confidence 4
No 7
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis}
Probab=64.93 E-value=5.5 Score=39.53 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCC-------------------------CCCCc-cchhHHHHHH----HHhHHHHhh
Q 023835 126 IGRLRAAYEENGGRP-------------------------ESNPF-GARAVRIYLR----EVRESQAKA 164 (276)
Q Consensus 126 IGRLRAAfEE~GG~P-------------------------EsNPF-aAraVRlYLR----eVRd~QAKA 164 (276)
..-++.+++.++++| |.||| +.|.+|+||+ |+=+.|.+|
T Consensus 561 ~~~~~~~~~~~~~~pv~iR~~D~~~~~~~~~~gg~~~~~~E~NP~lG~Rg~r~~~~~p~~~~~~~ql~A 629 (794)
T 2ols_A 561 AEGVATLAASVYPRKTIVRMSDFKSNEYANLVGGNVYEPHEENPMLGFRGAARYVADNFKDCFALECKA 629 (794)
T ss_dssp HHHHHHHHHHHTTSEEEEECCCCCHHHHHTSBTCGGGSCCCSCGGGSSCTHHHHHCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcEEEEeCCCCchhhHHHhcCccccccccCCCcCccceeeeeccchhHHHHHHHHH
Confidence 356677778777764 68997 7899999998 566667665
No 8
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=64.48 E-value=28 Score=24.10 Aligned_cols=61 Identities=21% Similarity=0.234 Sum_probs=40.1
Q ss_pred HHHHHHhCCCCcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH--
Q 023835 58 FLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAYEE-- 135 (276)
Q Consensus 58 F~QyL~NhrPPlsLs~CSgaHVleFLryLDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRAAfEE-- 135 (276)
|..||.....-+.|..-+..||.+||..+...| +..++..++.-||++|+-
T Consensus 35 l~~~i~~~~g~~~l~~It~~~i~~~~~~l~~~~---------------------------s~~t~~~~~~~l~~~~~~A~ 87 (121)
T 2kkv_A 35 LELYIFPHIGSSDIRQLKTSHLLAPIKEVDTSG---------------------------KHDVAQRLQQRVTAIMRYAV 87 (121)
T ss_dssp HHHHHSSSSTTSCTTCCCSGGGHHHHHHHHHTT---------------------------THHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCchhcCCCHHHcCHHHHHHHHHHHHHcC---------------------------CHHHHHHHHHHHHHHHHHHH
Confidence 333443333335567778999999998753211 345788899999999874
Q ss_pred -hCCCCCCCCcc
Q 023835 136 -NGGRPESNPFG 146 (276)
Q Consensus 136 -~GG~PEsNPFa 146 (276)
.|. -+.||+.
T Consensus 88 ~~~~-i~~NP~~ 98 (121)
T 2kkv_A 88 QNDY-IDSNPAS 98 (121)
T ss_dssp HTTS-SCSCSCS
T ss_pred HcCC-cccCcHH
Confidence 343 4589974
No 9
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=61.39 E-value=34 Score=23.02 Aligned_cols=50 Identities=6% Similarity=0.084 Sum_probs=36.3
Q ss_pred cccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCCCCc
Q 023835 69 LTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAYEE---NGGRPESNPF 145 (276)
Q Consensus 69 lsLs~CSgaHVleFLryLDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRAAfEE---~GG~PEsNPF 145 (276)
+.|..-+..||.+|+.++.+ +.+..++..++..||++|.- .|. -+.||+
T Consensus 39 ~~l~~It~~~i~~~~~~l~~---------------------------~~s~~t~~~~~~~lr~~~~~A~~~~~-i~~nP~ 90 (111)
T 2kiw_A 39 KPIQTIKKHDYQRFVDDISA---------------------------QYSKNYVDSIVASTNMIFKYAYDTRL-IKAMPS 90 (111)
T ss_dssp SCGGGCCHHHHHHHHHHHHT---------------------------TSCHHHHHHHHHHHHHHHHHHHHTTS-CSCCTT
T ss_pred CcHHHcCHHHHHHHHHHHHh---------------------------hhCHHHHHHHHHHHHHHHHHHHHhCC-hhhCcc
Confidence 45667789999999988641 12446888899999999874 343 468998
Q ss_pred c
Q 023835 146 G 146 (276)
Q Consensus 146 a 146 (276)
.
T Consensus 91 ~ 91 (111)
T 2kiw_A 91 E 91 (111)
T ss_dssp T
T ss_pred c
Confidence 4
No 10
>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=60.26 E-value=4.5 Score=28.86 Aligned_cols=26 Identities=38% Similarity=0.874 Sum_probs=21.3
Q ss_pred cccCceeeeecCCCCCCCCCCCCCCC
Q 023835 87 DQFGKTKVHISGCPYFGHPNPPAPCA 112 (276)
Q Consensus 87 DqfGKTKVH~~~C~ffG~p~ppapC~ 112 (276)
|+.|-.|-..++|+|||.|.-..=|.
T Consensus 11 ~~~gt~kCRk~GC~fFGTpen~GFCT 36 (48)
T 2eqe_A 11 DRTGTSKCRKAGCVYFGTPENKGFCT 36 (48)
T ss_dssp SSCCSSBCSSTTCCSBCCTTTTTCCH
T ss_pred cccccchhhhcCCCcccCcccCceee
Confidence 67788888899999999998666663
No 11
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}
Probab=60.09 E-value=9.6 Score=38.60 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=20.2
Q ss_pred CCCCc-cchhHHHHHH--HHhHHHHhh
Q 023835 141 ESNPF-GARAVRIYLR--EVRESQAKA 164 (276)
Q Consensus 141 EsNPF-aAraVRlYLR--eVRd~QAKA 164 (276)
|.||| |.|++|+||. |+=+.|.+|
T Consensus 683 E~NPmLG~RGiR~~l~~peif~~Q~rA 709 (913)
T 2x0s_A 683 ELNPMLGHRGCRLGITYPEIYNMQVRA 709 (913)
T ss_dssp CSSGGGSSCHHHHHHHSCHHHHHHHHH
T ss_pred CCChhhhccchhhhccCcHHHHHHHHH
Confidence 66998 8999999998 777788765
No 12
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=59.82 E-value=27 Score=24.32 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=35.9
Q ss_pred cccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHHh--CCCCCCCCcc
Q 023835 69 LTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAYEEN--GGRPESNPFG 146 (276)
Q Consensus 69 lsLs~CSgaHVleFLryLDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRAAfEE~--GG~PEsNPFa 146 (276)
+.|..-+..||.+|+..+.+.| +..++..++.-||++|+-. -|.-+.||+.
T Consensus 45 ~~l~~It~~~i~~~~~~l~~~~---------------------------s~~t~~~~~~~l~~~~~~Av~~~~i~~NP~~ 97 (118)
T 2kj8_A 45 LEIQDIEPMQLLEVIRRFEDRG---------------------------AMERANKARRRCGEVFRYAIVTGRAKYNPAP 97 (118)
T ss_dssp SBTTSCCHHHHHHHHHHHHTTT---------------------------CHHHHHHHHHHHHHHHHHHHHTTSCSCCSHH
T ss_pred CcHHHCCHHHHHHHHHHHHHcC---------------------------CHHHHHHHHHHHHHHHHHHHHcCCcccCcHH
Confidence 4566778999999998753211 3457888999999999742 2334689973
No 13
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=58.75 E-value=20 Score=24.48 Aligned_cols=52 Identities=19% Similarity=0.290 Sum_probs=37.1
Q ss_pred CcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCCCC
Q 023835 68 PLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAYEE---NGGRPESNP 144 (276)
Q Consensus 68 PlsLs~CSgaHVleFLryLDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRAAfEE---~GG~PEsNP 144 (276)
-+.|..-+..||.+|+.++-..| .+..++..++..||++|+- .|. -+.||
T Consensus 45 ~~~l~~it~~~i~~~~~~l~~~g--------------------------~s~~t~~~~~~~l~~~~~~a~~~~~-i~~nP 97 (118)
T 2kd1_A 45 NIKLAKLTSLHMQNYVNSLRDEG--------------------------LKRGTIEKIIKVIRNSLEHAIDLEL-ITKNV 97 (118)
T ss_dssp SSBGGGCCHHHHHHHHHHHHHHT--------------------------CCHHHHHHHHHHHHHHHHHHHHTTS-CSSCT
T ss_pred cCCHHhCCHHHHHHHHHHHHHcC--------------------------CCHHHHHHHHHHHHHHHHHHHHcCC-cccCc
Confidence 34677788999999998864311 2456888899999999874 343 45799
Q ss_pred cc
Q 023835 145 FG 146 (276)
Q Consensus 145 Fa 146 (276)
+.
T Consensus 98 ~~ 99 (118)
T 2kd1_A 98 AA 99 (118)
T ss_dssp TT
T ss_pred cc
Confidence 73
No 14
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=58.30 E-value=15 Score=32.70 Aligned_cols=34 Identities=41% Similarity=0.753 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhCCCC---------------------CCCCc-cchhHHHHHHH
Q 023835 123 DALIGRLRAAYEENGGRP---------------------ESNPF-GARAVRIYLRE 156 (276)
Q Consensus 123 DALIGRLRAAfEE~GG~P---------------------EsNPF-aAraVRlYLRe 156 (276)
+...--++.+++.++++| |.||| |.|+||+||..
T Consensus 62 ~~q~~~~~~~~~~~~~~~v~VR~~d~g~dk~~~~~~~~~E~nP~LG~RgiR~~l~~ 117 (324)
T 2xz9_A 62 EEQFEAYKEVVEKMGGRPVTIRTLDIGGDKELPYLDMPKEMNPFLGYRAIRLCLDR 117 (324)
T ss_dssp HHHHHHHHHHHHHTTTSCEEEECCCCBGGGCCTTTCCCCCSCGGGSSBTHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCceEEEeCCCCcchhhhhhccccccCcccccceeeeeccc
Confidence 444456677777766652 67998 99999999983
No 15
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=57.56 E-value=6.7 Score=26.77 Aligned_cols=51 Identities=16% Similarity=0.314 Sum_probs=36.5
Q ss_pred cccccccchhHhHHhhhhcc-cCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCCCC
Q 023835 69 LTLARCSGAHVIEFLKYLDQ-FGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAYEE---NGGRPESNP 144 (276)
Q Consensus 69 lsLs~CSgaHVleFLryLDq-fGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRAAfEE---~GG~PEsNP 144 (276)
+.|...+..+|.+|+.||-. .| .+-.|+...+..||++|+- .|. -+.||
T Consensus 47 ~~l~~it~~~i~~~~~~l~~~~~--------------------------~s~~Ti~~~~~~lr~~~~~a~~~~~-i~~nP 99 (112)
T 2key_A 47 LQFHELTEDFLRDYLIYMKKTLC--------------------------NADSTAQRNLSTIKIYVSAAIKKGY-MENDP 99 (112)
T ss_dssp CCTTTCCHHHHHHHHHHHHHTSC--------------------------CCHHHHHHHHHHHHHHHHHHHHTTS-CCSCH
T ss_pred CCHHHcCHHHHHHHHHHHHHccC--------------------------cchhhHHHHHHHHHHHHHHHHHCCC-cccCC
Confidence 35667788999999998753 11 2346888999999999874 344 34688
Q ss_pred cc
Q 023835 145 FG 146 (276)
Q Consensus 145 Fa 146 (276)
+.
T Consensus 100 ~~ 101 (112)
T 2key_A 100 FK 101 (112)
T ss_dssp HH
T ss_pred cc
Confidence 74
No 16
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=56.36 E-value=17 Score=28.01 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=46.0
Q ss_pred hhhhHHHHHHHHHhCCCCcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHH
Q 023835 51 KRRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLR 130 (276)
Q Consensus 51 KRRDWnTF~QyL~NhrPPlsLs~CSgaHVleFLryLDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLR 130 (276)
-++.++.|..|+.+. .|..-+..||.+|+.++-+.| +..++...+.-|+
T Consensus 27 y~~~~~~~~~~~~~~----~~~~i~~~~i~~~~~~l~~~~---------------------------~~~t~~~~~~~l~ 75 (283)
T 1z19_A 27 YMSKIKAIRRGLPDA----PLEDITTKEIAAMLNGYIDEG---------------------------KAASAKLIRSTLS 75 (283)
T ss_dssp HHHHHHHHHHHSCSC----BGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC----cHHhCCHHHHHHHHHHHhhcC---------------------------chhhHHHHHHHHH
Confidence 356677888888653 466678999999999865321 2357888899999
Q ss_pred HHHHHhC--CCCCCCCcc
Q 023835 131 AAYEENG--GRPESNPFG 146 (276)
Q Consensus 131 AAfEE~G--G~PEsNPFa 146 (276)
++|+..- +.-+.|||.
T Consensus 76 ~~~~~a~~~~~i~~np~~ 93 (283)
T 1z19_A 76 DAFREAIAEGHITTNHVA 93 (283)
T ss_dssp HHHHHHHHTTSCSCCTTT
T ss_pred HHHHHHHHCCCCCcCchh
Confidence 9988541 334578874
No 17
>2zxj_A Transcriptional regulatory protein WALR; two-component system, YYCG, response regulator, helix-turn-H motif, DNA-binding domain; 1.87A {Staphylococcus aureus} PDB: 2d1v_A
Probab=55.84 E-value=5.1 Score=30.86 Aligned_cols=21 Identities=38% Similarity=0.654 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCC
Q 023835 121 SLDALIGRLRAAYEENGGRPE 141 (276)
Q Consensus 121 SLDALIGRLRAAfEE~GG~PE 141 (276)
+||..|.|||..+++.++.|+
T Consensus 76 ~l~v~I~rLRkKL~~~~~~~~ 96 (120)
T 2zxj_A 76 TVDVTIRRLREKIEDDPSHPE 96 (120)
T ss_dssp HHHHHHHHHHHHHCSSTTSCS
T ss_pred ChHHHHHHHHHHHhhCCCCCC
Confidence 799999999999988776653
No 18
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=52.70 E-value=6.9 Score=27.82 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=17.4
Q ss_pred chhHHHHHHHHHHHHHhCCCC
Q 023835 120 GSLDALIGRLRAAYEENGGRP 140 (276)
Q Consensus 120 GSLDALIGRLRAAfEE~GG~P 140 (276)
.+||.+|-|||..+++.++.|
T Consensus 67 ~~l~~~I~rLRkkL~~~~~~~ 87 (102)
T 3zq7_A 67 HYLRIYMGHLRQKLEQDPARP 87 (102)
T ss_dssp HHHHHHHHHHHHHHCSSTTSC
T ss_pred chHHHHHHHHHHHhhcCCCCC
Confidence 479999999999998876543
No 19
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=52.40 E-value=10 Score=29.73 Aligned_cols=15 Identities=47% Similarity=0.771 Sum_probs=11.9
Q ss_pred HHhhhCCchhhhccc
Q 023835 161 QAKARGIPYEKKKRK 175 (276)
Q Consensus 161 QAKARGi~YeKKkrk 175 (276)
+-|.-||.|-+||||
T Consensus 39 ~~KGLGIsYgRkkRr 53 (86)
T 1tac_A 39 ITKGLGISYGRKKRR 53 (86)
T ss_dssp SSTTSSSSSCCCSGG
T ss_pred ccCCCceEecccccc
Confidence 458899999987764
No 20
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=49.08 E-value=7.7 Score=28.70 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=17.1
Q ss_pred chhHHHHHHHHHHHHHhCCCC
Q 023835 120 GSLDALIGRLRAAYEENGGRP 140 (276)
Q Consensus 120 GSLDALIGRLRAAfEE~GG~P 140 (276)
.+||.+|.|||..+++.++.+
T Consensus 75 ~~l~~~I~rLRkkL~~~~~~~ 95 (120)
T 2z9m_A 75 RTVDVTIRRLREKIEDDPSHP 95 (120)
T ss_dssp HHHHHHHHHHHHHHCSSTTSC
T ss_pred chHHHHHHHHHHHhhcCCCCC
Confidence 489999999999998766543
No 21
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A*
Probab=45.90 E-value=17 Score=36.89 Aligned_cols=26 Identities=42% Similarity=0.601 Sum_probs=22.3
Q ss_pred CCCCCc-cchhHHHHHH--HHhHHHHhhh
Q 023835 140 PESNPF-GARAVRIYLR--EVRESQAKAR 165 (276)
Q Consensus 140 PEsNPF-aAraVRlYLR--eVRd~QAKAR 165 (276)
-|.||| |.|.+|+||. |+=++|.+|-
T Consensus 662 ~E~NP~LG~RG~Rl~l~~peif~~QlrAi 690 (876)
T 1vbg_A 662 SEVNPMLGFRGCRLGISYPELTEMQARAI 690 (876)
T ss_dssp CCSCGGGSSCTHHHHHHSHHHHHHHHHHH
T ss_pred cCCCCcccccccccccCChHHHHHHHHHH
Confidence 589997 7899999998 8888888773
No 22
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A
Probab=44.43 E-value=27 Score=33.76 Aligned_cols=43 Identities=33% Similarity=0.556 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHhCCC---------------------CCCCCc-cchhHHHHHH--HHhHHHHhh
Q 023835 122 LDALIGRLRAAYEENGGR---------------------PESNPF-GARAVRIYLR--EVRESQAKA 164 (276)
Q Consensus 122 LDALIGRLRAAfEE~GG~---------------------PEsNPF-aAraVRlYLR--eVRd~QAKA 164 (276)
.+...--++.+++.++++ .|.||| |.|+||+||. ++=+.|.+|
T Consensus 312 ~~~q~~~~~~~~~~~~g~pv~VR~lD~g~Dk~l~~~~~~~E~NP~LG~RgiRl~l~~p~if~~QlrA 378 (572)
T 2wqd_A 312 EEEQFEAYKEVLEAMGGKRVVVRTLDIGGDKELSYLNLPEEMNPFLGYRAIRLSLAQQDIFRPQLRA 378 (572)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECCCCCTTSCCTTSCCCCCSCGGGSSCHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEECCCCCccchhhccCcccCCchhhhhhhhhcccChHHHHHHHHH
Confidence 455666677777777665 367997 7999999995 554444443
No 23
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A
Probab=42.23 E-value=24 Score=34.09 Aligned_cols=34 Identities=35% Similarity=0.553 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHhCCC---------------------CCCCCc-cchhHHHHHH
Q 023835 122 LDALIGRLRAAYEENGGR---------------------PESNPF-GARAVRIYLR 155 (276)
Q Consensus 122 LDALIGRLRAAfEE~GG~---------------------PEsNPF-aAraVRlYLR 155 (276)
.+...--++.+++.++++ .|.||| |.|+||+||.
T Consensus 310 ~~~q~~~~~~~~~~~~g~pv~VRtlD~g~Dk~l~~~~~~~E~NP~LG~RgiRl~l~ 365 (575)
T 2hwg_A 310 EEEQFAAYKAVAEACGSQAVIVRTMDIGGDKELPYMNFPKEENPFLGWRAIRIAMD 365 (575)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECCCCSSSCCCGGGCCCCCSCGGGSSCTHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCceEEEeCCCCCccchhhccCCCCCCccccchheeeccc
Confidence 455666677788877665 368998 8999999997
No 24
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=41.81 E-value=7 Score=30.61 Aligned_cols=16 Identities=50% Similarity=0.704 Sum_probs=9.8
Q ss_pred HHHhhhCCchhhhccc
Q 023835 160 SQAKARGIPYEKKKRK 175 (276)
Q Consensus 160 ~QAKARGi~YeKKkrk 175 (276)
+.-|.-||.|-+|||+
T Consensus 38 Fl~KGLGIsYgRkkRr 53 (86)
T 3mi9_C 38 FITKALGISYGRKKRR 53 (86)
T ss_dssp HHHTTSCCCSCC----
T ss_pred hcccCCcccccccccc
Confidence 3468899999877653
No 25
>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A
Probab=40.78 E-value=19 Score=36.51 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=22.2
Q ss_pred CCCCCc-cchhHHHHHH--HHhHHHHhhh
Q 023835 140 PESNPF-GARAVRIYLR--EVRESQAKAR 165 (276)
Q Consensus 140 PEsNPF-aAraVRlYLR--eVRd~QAKAR 165 (276)
-|.||| |.|.+|+||. |+=++|.+|-
T Consensus 655 ~E~NP~LG~RG~Rl~l~~peif~~QlrAi 683 (873)
T 1kbl_A 655 HEFNPMMGHRGCRLAVTYPEIAKMQTRAV 683 (873)
T ss_dssp CCSCGGGSSCTHHHHHHCHHHHHHHHHHH
T ss_pred cCCCCCcccceeccccCChHHHHHHHHHH
Confidence 589997 7899999998 8888888773
No 26
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=39.84 E-value=14 Score=25.86 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=16.0
Q ss_pred chhHHHHHHHHHHHHHhC
Q 023835 120 GSLDALIGRLRAAYEENG 137 (276)
Q Consensus 120 GSLDALIGRLRAAfEE~G 137 (276)
.+||.+|-|||..+++.|
T Consensus 61 ~~l~~~I~rLRkkL~~~~ 78 (96)
T 3rjp_A 61 NVVDVYIRYLRGKIDIPG 78 (96)
T ss_dssp HHHHHHHHHHHHHHCCTT
T ss_pred chHHHHHHHHHHHhcccC
Confidence 489999999999998775
No 27
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A
Probab=38.52 E-value=26 Score=36.06 Aligned_cols=37 Identities=30% Similarity=0.461 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCCCc-cchhHHHHHH--HHhHHHHhh
Q 023835 121 SLDALIGRLRAAYEENGGRPESNPF-GARAVRIYLR--EVRESQAKA 164 (276)
Q Consensus 121 SLDALIGRLRAAfEE~GG~PEsNPF-aAraVRlYLR--eVRd~QAKA 164 (276)
+.|.++.++.. .-|.||| |.|.+|++|. |+=++|.+|
T Consensus 670 ~~dk~~~~~~~-------~~E~NPmLG~RG~Rl~l~~peif~~QlrA 709 (913)
T 1h6z_A 670 PAEKVRNRVNA-------LHELNPMLGHRGCRLGITYPEIYNMQVRA 709 (913)
T ss_dssp CHHHHHHHHHS-------SCCSSSTTSSCHHHHHHHSTTHHHHHHHH
T ss_pred CHHHHHhhhcC-------CCCCCCCCccchhccCCCChHHHHHHHHH
Confidence 46777666542 4689999 9999999996 566777765
No 28
>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=37.54 E-value=69 Score=21.79 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=35.5
Q ss_pred CCcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCC-
Q 023835 67 PPLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAYEE---NGGRPES- 142 (276)
Q Consensus 67 PPlsLs~CSgaHVleFLryLDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRAAfEE---~GG~PEs- 142 (276)
.-+.|..-+..||.+||..+-..| . .++..+...|+++|+. .|. -+.
T Consensus 40 G~~~l~~It~~~i~~~~~~l~~~~---------------------------~-~t~~~~~~~l~~i~~~Av~~~~-i~~~ 90 (106)
T 2khv_A 40 GPLSVQDVDTKLIMKVLDPIWEQK---------------------------P-ETASRLRGRIESVLDWATVRGY-REGD 90 (106)
T ss_dssp TTSBSSSCCHHHHHHHHHHHHHHC---------------------------H-HHHHHHHHHHHHHHHHHHHHTS-SCSC
T ss_pred CCccHHHcCHHHHHHHHHHHHHhC---------------------------h-HHHHHHHHHHHHHHHHHHHcCC-cCCC
Confidence 456677788999999997542111 2 5788889999999874 354 356
Q ss_pred CCcc
Q 023835 143 NPFG 146 (276)
Q Consensus 143 NPFa 146 (276)
||+.
T Consensus 91 NP~~ 94 (106)
T 2khv_A 91 NPAR 94 (106)
T ss_dssp CTTS
T ss_pred CchH
Confidence 9974
No 29
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=37.23 E-value=47 Score=22.51 Aligned_cols=49 Identities=16% Similarity=0.126 Sum_probs=34.0
Q ss_pred ccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCCCCcc
Q 023835 70 TLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAYEE---NGGRPESNPFG 146 (276)
Q Consensus 70 sLs~CSgaHVleFLryLDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRAAfEE---~GG~PEsNPFa 146 (276)
.|..-+..||.+|+.++-.. .+..++..++..||++|+- .| .-+.||+.
T Consensus 47 ~l~~it~~~i~~~~~~l~~~---------------------------~s~~t~~~~~~~l~~~~~~A~~~~-~i~~NP~~ 98 (116)
T 2kj5_A 47 KVEDVKPRHIDDVLKAVMKR---------------------------GAPSIANDTLRWLKRMFNYAIKRH-IIEYNPAA 98 (116)
T ss_dssp BSSSCCHHHHHHHHHHHHHH---------------------------TCHHHHHHHHHHHHHHHHHHHHTT-SCSSCGGG
T ss_pred cHhhCCHHHHHHHHHHHHHc---------------------------cChHHHHHHHHHHHHHHHHHHHcC-ccccCchh
Confidence 45566788999999875321 1345788889999999874 34 34689973
No 30
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=33.81 E-value=58 Score=22.89 Aligned_cols=49 Identities=12% Similarity=0.051 Sum_probs=33.4
Q ss_pred ccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHHh--CCCCCCCCc
Q 023835 70 TLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAYEEN--GGRPESNPF 145 (276)
Q Consensus 70 sLs~CSgaHVleFLryLDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRAAfEE~--GG~PEsNPF 145 (276)
.|..-+..||.+||..+-..| +..++..++..|+++|+-. -|.-+.||+
T Consensus 51 ~l~~It~~~i~~~l~~l~~~~---------------------------~~~t~~~~~~~L~~if~~Av~~g~i~~NP~ 101 (118)
T 2kj9_A 51 DIAELDTGDLLVPIKKIEKLG---------------------------YLEIAMRVKQYATAIMRYAVQQKMIRFNPA 101 (118)
T ss_dssp BGGGCCHHHHHHHHHHHHTTT---------------------------CHHHHHHHHHHHHHHHHHHHHTTSSSSCHH
T ss_pred CHHHCCHHHHHHHHHHHHHCC---------------------------CHHHHHHHHHHHHHHHHHHHHcCCcccCch
Confidence 466678889999987643211 2357888999999998742 233457886
No 31
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=33.09 E-value=31 Score=25.59 Aligned_cols=21 Identities=43% Similarity=0.624 Sum_probs=17.8
Q ss_pred cchhHHHHHHHHHHHHHhCCC
Q 023835 119 WGSLDALIGRLRAAYEENGGR 139 (276)
Q Consensus 119 WGSLDALIGRLRAAfEE~GG~ 139 (276)
-.+||.+|-|||..+++.+..
T Consensus 79 ~~tl~~~I~rLRkkL~~~~~~ 99 (115)
T 2k4j_A 79 NKSIDVIIGRLRSKIEKNPKQ 99 (115)
T ss_dssp HHHHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHhhcCCCC
Confidence 358999999999999987654
No 32
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=32.12 E-value=1.2e+02 Score=20.73 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCCCcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHH
Q 023835 55 WNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAYE 134 (276)
Q Consensus 55 WnTF~QyL~NhrPPlsLs~CSgaHVleFLryLDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRAAfE 134 (276)
++.|..||. -+.|..-+..||.+|+.++.+. .+-.++..++..|+++|+
T Consensus 36 ~~~i~p~~g----~~~l~~It~~~i~~~~~~l~~~---------------------------~s~~t~~~~~~~l~~i~~ 84 (112)
T 3lys_A 36 LKYLKTYMP----NVLISEITASSYQRALNKFAET---------------------------HAKASTKGFHTRVRASIQ 84 (112)
T ss_dssp HHHHHHHSS----SCBTTTCCHHHHHHHHHHHHTT---------------------------SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC----CCCHHhCCHHHHHHHHHHHHHh---------------------------ccHHHHHHHHHHHHHHHH
Confidence 344555553 3457778899999999876321 234578889999999998
Q ss_pred Hh--CCCCCCCCcc
Q 023835 135 EN--GGRPESNPFG 146 (276)
Q Consensus 135 E~--GG~PEsNPFa 146 (276)
-. -|--+.||+.
T Consensus 85 ~Av~~g~i~~NP~~ 98 (112)
T 3lys_A 85 CLIEEGRLQKDFTT 98 (112)
T ss_dssp HHHHTTSCSSCTTS
T ss_pred HHHHCCCcccCccc
Confidence 42 2334579975
No 33
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=30.62 E-value=2.2e+02 Score=23.12 Aligned_cols=70 Identities=19% Similarity=0.410 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhCCCCcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHH
Q 023835 54 DWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAY 133 (276)
Q Consensus 54 DWnTF~QyL~NhrPPlsLs~CSgaHVleFLryLDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRAAf 133 (276)
.|=++.+-|-.++. .+.+.+++++|++++|+. ||.|-..+.- -.+.| +.+=.-|+.+|
T Consensus 9 ~fi~~Lk~~LK~rG----vkV~~k~L~~Ff~~i~~~---------cPWFp~eGtL------d~~~W---~kVG~~L~~~~ 66 (124)
T 2lpy_A 9 RYVEQLKQALKTRG----VKVKYADLLKFFDFVKDT---------CPWFPQEGTI------DIKRW---RRVGDCFQDYY 66 (124)
T ss_dssp HHHHHHHHHHHTTT----CCCCHHHHHHHHHHHHHH---------CTTCTTTCCC------CSHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC----eeecHHHHHHHHHHHHHh---------CCCcCCCCcc------CHHHH---HHHHHHHHHHH
Confidence 34444443334444 346789999999999874 8877433310 12233 33445688888
Q ss_pred HHhCCCCCCCCccc
Q 023835 134 EENGGRPESNPFGA 147 (276)
Q Consensus 134 EE~GG~PEsNPFaA 147 (276)
+++| |+.-|..+
T Consensus 67 ~~~~--~~~iP~~~ 78 (124)
T 2lpy_A 67 NTFG--PEKVPVTA 78 (124)
T ss_dssp HTTC--CSSCCTHH
T ss_pred HHhC--CCcCChhH
Confidence 9988 77888764
No 34
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling Pro; NMR {Helicobacter pylori}
Probab=30.52 E-value=23 Score=25.46 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=17.1
Q ss_pred cchhHHHHHHHHHHHHHhCCC
Q 023835 119 WGSLDALIGRLRAAYEENGGR 139 (276)
Q Consensus 119 WGSLDALIGRLRAAfEE~GG~ 139 (276)
-.+||.+|.|||..+++.++.
T Consensus 67 ~~~l~~~I~rLRkkL~~~~~~ 87 (109)
T 2hqn_A 67 PNVIEVAINQIRQKMDKPLGI 87 (109)
T ss_dssp TTHHHHHHHHHHHHTTTTSCC
T ss_pred cchHHHHHHHHHHHhccccCC
Confidence 358999999999999876443
No 35
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=30.32 E-value=71 Score=25.81 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhCCCCcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHH
Q 023835 54 DWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAY 133 (276)
Q Consensus 54 DWnTF~QyL~NhrPPlsLs~CSgaHVleFLryLDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRAAf 133 (276)
.++.|..||.+ +.|..-+..||.+|+.++-..| +..++...+..|+++|
T Consensus 103 ~~~~~~~~~g~----~~l~~it~~~i~~~~~~l~~~~---------------------------~~~t~~~~~~~l~~~~ 151 (356)
T 1z1b_A 103 KIKAIRRGLPD----APLEDITTKEIAAMLNGYIDEG---------------------------KAASAKLIRSTLSDAF 151 (356)
T ss_dssp HHHHHHHHSCS----CBGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC----CcHHHCCHHHHHHHHHHHHHcc---------------------------cHHHHHHHHHHHHHHH
Confidence 34445555542 4466678889999998764321 2357888899999998
Q ss_pred HHh--CCCCCCCCcc
Q 023835 134 EEN--GGRPESNPFG 146 (276)
Q Consensus 134 EE~--GG~PEsNPFa 146 (276)
+-. -+.-+.||+.
T Consensus 152 ~~a~~~~~i~~np~~ 166 (356)
T 1z1b_A 152 REAIAEGHITTNHVA 166 (356)
T ss_dssp HHHHHTTSCSSCTTT
T ss_pred HHHHHcCCcccChHh
Confidence 853 1334578874
No 36
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=30.21 E-value=21 Score=25.63 Aligned_cols=20 Identities=40% Similarity=0.526 Sum_probs=16.9
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 023835 120 GSLDALIGRLRAAYEENGGR 139 (276)
Q Consensus 120 GSLDALIGRLRAAfEE~GG~ 139 (276)
.+||.+|.|||..+++.|..
T Consensus 70 ~~l~~~I~rLRkkL~~~~~~ 89 (110)
T 1opc_A 70 RSIDVQISRLRRMVEEDPAH 89 (110)
T ss_dssp SCHHHHHHHHHHHHCSCTTS
T ss_pred chHHHHHHHHHHHhhcCCCC
Confidence 58999999999999876643
No 37
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=28.55 E-value=38 Score=31.37 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=30.8
Q ss_pred cchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhc
Q 023835 75 SGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAW 119 (276)
Q Consensus 75 SgaHVleFLryLDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAW 119 (276)
.++.|-+||..+.-.+.+.|-.....--.....|.||+|.+|++-
T Consensus 108 ~~~~V~~~l~~l~~~~d~~v~~~~~~~~~~~~~p~~~~~tl~~~l 152 (458)
T 3qfs_A 108 DSALVNQLGKILGADLDVVMSLNNLDEESNKKHPFPCPTSYRTAL 152 (458)
T ss_dssp CHHHHHHHHHHHTCCTTCEEEEEESSTTCSCCCSSSSSEEHHHHH
T ss_pred CHHHHHHHHHHhCcCCCceEEecCCCcccccCCCCCCCeeHHHHH
Confidence 356788999988877878777654322223345788999888764
No 38
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=28.45 E-value=12 Score=30.84 Aligned_cols=35 Identities=31% Similarity=0.515 Sum_probs=16.1
Q ss_pred CceeeeecCCCCCCCCCCCCCCCCchh----hhcchhHHHHHHHHH
Q 023835 90 GKTKVHISGCPYFGHPNPPAPCACPLK----QAWGSLDALIGRLRA 131 (276)
Q Consensus 90 GKTKVH~~~C~ffG~p~ppapC~CPLR----QAWGSLDALIGRLRA 131 (276)
++-..|...|.|. ||.||.. .--|+++.|..-|+.
T Consensus 23 ~~~~~He~~C~f~-------p~~Cp~~g~~C~~~G~~~~l~~H~~~ 61 (193)
T 2a25_A 23 TEKADHEELCEFR-------PYSCPCPGASCKWQGSLDAVMPHLMH 61 (193)
T ss_dssp --------------------CEECCCC--CCCCEECSTTHHHHHHH
T ss_pred ccccchhhcCCCC-------CccCCCCCCCCcCCCCHHHHHHHHHH
Confidence 3456899999775 6777763 223899999999985
No 39
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=26.47 E-value=28 Score=25.60 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCCC
Q 023835 122 LDALIGRLRAAYEENGGRPESN 143 (276)
Q Consensus 122 LDALIGRLRAAfEE~GG~PEsN 143 (276)
-|-=|+||++...+||.-||-|
T Consensus 37 ~eQEieRL~~LLkqHgl~~e~~ 58 (58)
T 3a2a_A 37 KEQEIERLNKLLRQHGLLGEVN 58 (58)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHcCCcccCC
Confidence 4667999999999999888755
No 40
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=26.35 E-value=34 Score=24.48 Aligned_cols=20 Identities=40% Similarity=0.453 Sum_probs=16.9
Q ss_pred cchhHHHHHHHHHHHHHhCC
Q 023835 119 WGSLDALIGRLRAAYEENGG 138 (276)
Q Consensus 119 WGSLDALIGRLRAAfEE~GG 138 (276)
-.+||.+|.|||..+++.|.
T Consensus 69 ~~~l~~~I~rLRkkL~~~~~ 88 (106)
T 1gxq_A 69 DRTVDVHIRRLRKALEPGGH 88 (106)
T ss_dssp THHHHHHHHHHHHHHGGGTG
T ss_pred cccHHHHHHHHHHHhcccCC
Confidence 35899999999999987653
No 41
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=25.95 E-value=28 Score=26.00 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCCccccc------ccchhHhHHhhhhcccCcee
Q 023835 55 WNTFLQYLKNHKPPLTLAR------CSGAHVIEFLKYLDQFGKTK 93 (276)
Q Consensus 55 WnTF~QyL~NhrPPlsLs~------CSgaHVleFLryLDqfGKTK 93 (276)
++.+.+|+..+ ++++++. -|-+-.+-+|.|+|+.|-|+
T Consensus 68 ~~~l~~~~~~~-~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~Tr 111 (121)
T 2pjp_A 68 ANMIRDLDQEC-GSTCAADFRDRLGVGRKLAIQILEYFDRIGFTR 111 (121)
T ss_dssp HHHHHHHHHHH-SSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHC-CCccHHHHHHHHCCcHHHHHHHHHHHhhcCCeE
Confidence 55666676666 6676654 56677888999999999986
No 42
>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753}
Probab=25.79 E-value=73 Score=21.03 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=20.8
Q ss_pred hcchhHHHHHHHHHHHHHh--CCCCCCCCcc
Q 023835 118 AWGSLDALIGRLRAAYEEN--GGRPESNPFG 146 (276)
Q Consensus 118 AWGSLDALIGRLRAAfEE~--GG~PEsNPFa 146 (276)
+..++..++..||++|+-. -|--+.||+.
T Consensus 62 s~~t~~~~~~~l~~~~~~A~~~~~i~~NP~~ 92 (108)
T 2kob_A 62 AKNTLKAIRNTASQIFRLAIENRAIDFNPAD 92 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSSSSCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcccCccc
Confidence 4467888999999998742 2334689984
No 43
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=25.69 E-value=15 Score=32.88 Aligned_cols=35 Identities=31% Similarity=0.445 Sum_probs=0.0
Q ss_pred hCCCCCCCCccchhHHHHHHHHhHHHHhhhCCch-----hhhcccCCCc
Q 023835 136 NGGRPESNPFGARAVRIYLREVRESQAKARGIPY-----EKKKRKRPVV 179 (276)
Q Consensus 136 ~GG~PEsNPFaAraVRlYLReVRd~QAKARGi~Y-----eKKkrkr~~~ 179 (276)
+.+.++.+| -|=.-|.=.+ | -||.| +||+|+|..+
T Consensus 308 ~~~~~~~~~-------~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 347 (358)
T 2pk2_A 308 NTGGQEARP-------NYHCQLCFLR-S-LGIDYLDASLRKKNKQRLKA 347 (358)
T ss_dssp -------------------------------------------------
T ss_pred cCCCCCCcc-------ceecHHHhcc-c-cceeeecccccccccccCCC
No 44
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=25.31 E-value=49 Score=22.95 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=17.5
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCCCC
Q 023835 119 WGSLDALIGRLRAAYEENGGRPESNP 144 (276)
Q Consensus 119 WGSLDALIGRLRAAfEE~GG~PEsNP 144 (276)
-|.=..||-||..+.++.|+.++.-|
T Consensus 25 ~G~KadLieRL~~~~~~~~~~~~~~p 50 (51)
T 1h1j_S 25 GGLKNELVQRLIKDDEESKGESEVSP 50 (51)
T ss_dssp CSSHHHHHHHHHHHHHHSCC------
T ss_pred CCcHHHHHHHHHHHHHhccCCcccCC
Confidence 36667999999999999998877665
No 45
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=24.32 E-value=32 Score=25.74 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=16.9
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 023835 120 GSLDALIGRLRAAYEENGGR 139 (276)
Q Consensus 120 GSLDALIGRLRAAfEE~GG~ 139 (276)
.+||.+|-|||..+++.|..
T Consensus 82 ~tl~~~I~rLRkkL~~~~~~ 101 (121)
T 2hwv_A 82 RTVDVTVRRLREKIEDSPSH 101 (121)
T ss_dssp HHHHHHHHHHHHHHCSSTTS
T ss_pred cHHHHHHHHHHHHHhhcCCC
Confidence 58999999999999876643
No 46
>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A
Probab=24.32 E-value=32 Score=25.30 Aligned_cols=21 Identities=24% Similarity=0.811 Sum_probs=16.8
Q ss_pred eeeecCCCCCCCCCCCCCCCC
Q 023835 93 KVHISGCPYFGHPNPPAPCAC 113 (276)
Q Consensus 93 KVH~~~C~ffG~p~ppapC~C 113 (276)
.+=..+|.|||.|..-..|.-
T Consensus 14 ~lC~ngCGFfGnpaT~nlCSk 34 (62)
T 2kzy_A 14 MLCSTGCGFYGNPRTNGMCSV 34 (62)
T ss_dssp CBCTTCCSSBCCTTTTSCCHH
T ss_pred cchhhCCCCcCChhhcCcCHH
Confidence 345689999999998888863
No 47
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=23.94 E-value=51 Score=31.34 Aligned_cols=46 Identities=17% Similarity=0.168 Sum_probs=31.1
Q ss_pred cchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcc
Q 023835 75 SGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWG 120 (276)
Q Consensus 75 SgaHVleFLryLDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWG 120 (276)
.++.|-+||..+.-.+.+.|......--.....|.||+|.||++.-
T Consensus 268 ~~~~V~~~l~~l~l~~d~~v~~~~~~~~~~~~~~~p~~~tl~~~l~ 313 (618)
T 3qe2_A 268 DSALVNQLGKILGADLDVVMSLNNLDEESNKKHPFPCPTSYRTALT 313 (618)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEEESCTTCSCCSSSSSSEEHHHHHH
T ss_pred CHHHHHHHHHHhCcCCCceEEEecCCccccCCCCCCCceEHHHhhh
Confidence 3567888998887777787776543222233457789999888643
No 48
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=23.56 E-value=51 Score=24.95 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=19.4
Q ss_pred chhHHHHHHHHhHHHHhhhCCch
Q 023835 147 ARAVRIYLREVRESQAKARGIPY 169 (276)
Q Consensus 147 AraVRlYLReVRd~QAKARGi~Y 169 (276)
..++---|+..|...|+.+|||-
T Consensus 14 d~~l~~~L~~wR~~~A~~~~vP~ 36 (103)
T 2e1f_A 14 QIVLYGKLVEARQKHANKMDVPP 36 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC
Confidence 35677789999999999999984
No 49
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.98 E-value=45 Score=25.83 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=18.9
Q ss_pred CCCcccccccchhHhHHhhh
Q 023835 66 KPPLTLARCSGAHVIEFLKY 85 (276)
Q Consensus 66 rPPlsLs~CSgaHVleFLry 85 (276)
.||..|+.=|-.+|.+|||+
T Consensus 10 ~pP~dLs~lSv~EVs~~Lr~ 29 (84)
T 2dkz_A 10 QPPADLSGLSIEEVSKSLRF 29 (84)
T ss_dssp CCCSCCSSCCHHHHHHHGGG
T ss_pred CCchhhhhcCHHHHHHHHHH
Confidence 69999999999999999987
No 50
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=21.62 E-value=43 Score=22.94 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=14.9
Q ss_pred CCCCcccccccchhHhHHhhhhcc
Q 023835 65 HKPPLTLARCSGAHVIEFLKYLDQ 88 (276)
Q Consensus 65 hrPPlsLs~CSgaHVleFLryLDq 88 (276)
..|+..|..=--++|++||+.+..
T Consensus 75 ~Mp~~~Ls~~ei~~l~~yl~~~~~ 98 (110)
T 2l4d_A 75 AMPNMRLGDAEVSALISYLEEETA 98 (110)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHccc
Confidence 678776654445566677766543
No 51
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.77 E-value=59 Score=24.15 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=13.2
Q ss_pred CCCcccccccchhHhHHhhh
Q 023835 66 KPPLTLARCSGAHVIEFLKY 85 (276)
Q Consensus 66 rPPlsLs~CSgaHVleFLry 85 (276)
.....+..=+..+|.+||..
T Consensus 22 ~~~~~v~~Ws~~~V~~WL~~ 41 (103)
T 2e8o_A 22 ELHPDYKTWGPEQVCSFLRR 41 (103)
T ss_dssp CCCSCGGGCHHHHHHHHHHH
T ss_pred ccccChhhCCHHHHHHHHHH
Confidence 34455555667888888865
No 52
>4a8e_A XER A, probable tyrosine recombinase XERC-like; cell cycle, chromosome dimer resolution, PAB0255; 2.99A {Pyrococcus abyssi}
Probab=20.60 E-value=1.3e+02 Score=23.24 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHHhCCCCcccccccchhHhHHhhhhcccCceeeeecCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHH
Q 023835 52 RRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHISGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRA 131 (276)
Q Consensus 52 RRDWnTF~QyL~NhrPPlsLs~CSgaHVleFLryLDqfGKTKVH~~~C~ffG~p~ppapC~CPLRQAWGSLDALIGRLRA 131 (276)
++.|+.|..| +...+..||.+|+.++-+.| .+..++...+..|++
T Consensus 34 ~~~l~~~~~~---------~~~i~~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~l~~ 78 (292)
T 4a8e_A 34 TYYISKFFEE---------GHSPTARDALRFLAKLKRKG--------------------------YSTRSLNLVIQALKA 78 (292)
T ss_dssp HHHHHHHHHH---------TCCSSHHHHHHHHHHHHHHC--------------------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------HhcCCHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHH
Confidence 4456666666 66778999999999875322 234678888888999
Q ss_pred HHHHhC
Q 023835 132 AYEENG 137 (276)
Q Consensus 132 AfEE~G 137 (276)
+|+...
T Consensus 79 ~~~~a~ 84 (292)
T 4a8e_A 79 YFKFEG 84 (292)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 888653
No 53
>3q9v_A DNA-binding response regulator; response regulator protein, DNA binding protein; 1.60A {Deinococcus radiodurans}
Probab=20.47 E-value=67 Score=24.59 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=17.0
Q ss_pred chhHHHHHHHHHHHHHhCC
Q 023835 120 GSLDALIGRLRAAYEENGG 138 (276)
Q Consensus 120 GSLDALIGRLRAAfEE~GG 138 (276)
.+||.+|.|||..+++.|.
T Consensus 99 ~~l~~~I~rLRkkL~~~~~ 117 (133)
T 3q9v_A 99 NVVDVHMANLRAKLRDLDG 117 (133)
T ss_dssp CHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhccCC
Confidence 4899999999999998765
Done!