BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023836
         (276 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1R61|A Chain A, The Structure Of Predicted Metal-Dependent Hydrolase From
           Bacillus Stearothermophilus
 pdb|1R61|B Chain B, The Structure Of Predicted Metal-Dependent Hydrolase From
           Bacillus Stearothermophilus
 pdb|3KRV|A Chain A, The Structure Of Potential Metal-Dependent Hydrolase With
           Cyclase Activity
 pdb|3KRV|B Chain B, The Structure Of Potential Metal-Dependent Hydrolase With
           Cyclase Activity
          Length = 207

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 105/215 (48%), Gaps = 17/215 (7%)

Query: 61  RIFDITHQVTVDLPSYDTEGGRLGQFLRLPVSMKNGSFCNISEMKFTTHTGTHVDAPGHF 120
           +++D+T  +   +P Y  +  +  +      ++ NG +   S +    HTGTH+DAP H 
Sbjct: 4   KVYDVTAPIYEGMPVYKNKPEKQPK----RTTITNG-YVTESRIDMDVHTGTHIDAPLHM 58

Query: 121 FDHYFDAGFDADSLDLDVLNGPGLLVDVPR-DKNLTAEVLESLNIPKGVRRVLFRTLNTD 179
            +     G   +++ L+ L GP  L D+   +  +T + +  L+I +G   VLF+T N+ 
Sbjct: 59  VE----GGATFETIPLNDLVGPCKLFDLTHVNDRITKDDIAHLDIQEG-DFVLFKTKNS- 112

Query: 180 RQLMFKKFDTSYVGFMADGAKWLVENTDIKLVGVDYLSVAAFDDIISAHHELLRNREIIP 239
                  F   ++    D A++L +   I+ VG+D L +    +    H  L     II 
Sbjct: 113 ---FEDAFHFEFIFVAEDAARYLADKQ-IRGVGIDALGIERAQEGHPTHKTLFSAGVII- 167

Query: 240 VEGLKLDHVPAGLYSIHCLPLRMVGAEGSPVRCIL 274
           +EGL+L  VP G Y +   PL++VG + +P R +L
Sbjct: 168 IEGLRLKDVPEGRYFMVAAPLKLVGTDAAPARVLL 202


>pdb|4J0N|A Chain A, Crystal Structure Of A Manganese Dependent Isatin
           Hydrolase
 pdb|4J0N|B Chain B, Crystal Structure Of A Manganese Dependent Isatin
           Hydrolase
          Length = 263

 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 22/203 (10%)

Query: 94  KNGSFCNISEMKFTTHTGTHVDAPGHFFDHY-FDAGFDADSLDLDVLNGPGLLVDVPRDK 152
            +G F   + M    H+GTH DAP H+     +  GF  D+LD+  L  P  ++D  ++ 
Sbjct: 58  SDGPFFAWNWMVLGEHSGTHFDAPHHWITGKDYSDGF-TDTLDVQRLIAPVNVIDCSKES 116

Query: 153 N------LTAEVLESLNIPKGV----RRVLFRTLNTDR---QLMFKKFDTS---YVGFMA 196
                  LTA+++++     G       V+ RT    R   +  F   D +     G   
Sbjct: 117 AADPDFLLTADLIKAWEAEHGEIGAGEWVVMRTDWDKRAGDEAAFLNADETGPHSPGPTP 176

Query: 197 DGAKWLVENTDI----KLVGVDYLSVAAFDDIISAHHELLRNREIIPVEGLKLDHVPAGL 252
           D  ++L+    +    + +G D       +    AH+ L R+          LD +PA  
Sbjct: 177 DAIEYLLSKKIVGWGSQCIGTDAGQAGGMEPPFPAHNLLHRDNCFGLASLANLDKLPAKG 236

Query: 253 YSIHCLPLRMVGAEGSPVRCILI 275
             +   PL++    GSP+R + +
Sbjct: 237 AILIAAPLKIERGTGSPIRALAL 259


>pdb|2B0A|A Chain A, Crystal Structure Of Protein Mj0783 From Methanococcus
           Jannaschii
          Length = 186

 Score = 37.7 bits (86), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 34/181 (18%)

Query: 101 ISEMKFTTHTGTHVDAPGHFFDHYFDAGFDADSLDLD-VLNGPGLLV---DVPRDKNLTA 156
           +SE+   +H  TH+D P H        G +      D ++ G G  +   D P +K    
Sbjct: 32  VSEIIMGSHLCTHIDYPKH-------VGLENRIPFKDGIIKGKGYCISLDDFPGNKLPAC 84

Query: 157 EVLESLNIPKGVRRVLFRTLNTDRQLMFKKFDTSYVGFMADGAKWLVENTDIKLVGVDYL 216
           ++L    I  G  +         R   F+K     + F+ D  K     ++IK VG+D  
Sbjct: 85  DILL---IYTGFSKYW------GRDEYFEKIPE--IPFLDDIIK-----SNIKCVGIDAC 128

Query: 217 SVAAFDDIISAHHELLRNREIIPVEGLK--LDHVPAGLYSIHCLPLRMVGAEGSPVRCIL 274
           ++  F++    H  LL N  I+ +E L   L ++    +    LPL++   + SP+RCI 
Sbjct: 129 TIGGFEE----HKRLLSNN-ILIIENLNENLKNLVGKSFYFLGLPLKIFDIDASPIRCIA 183

Query: 275 I 275
           I
Sbjct: 184 I 184


>pdb|2F2F|C Chain C, Crystal Structure Of Cytolethal Distending Toxin (Cdt)
          From Actinobacillus Actinomycetemcomitans
 pdb|2F2F|F Chain F, Crystal Structure Of Cytolethal Distending Toxin (Cdt)
          From Actinobacillus Actinomycetemcomitans
          Length = 186

 Score = 29.3 bits (64), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 11/87 (12%)

Query: 10 QFLLPFVIFTLLALTVAANDEAYPTT------TTAPDCSLSEELLIKPVRREVYGGGRIF 63
          ++LL F++  +L LT  A     PTT      +  P  SL   L  +P++ + Y      
Sbjct: 3  KYLLSFLLSMILTLTSHAESNPDPTTYPDVELSPPPRISLRSLLTAQPIKNDHYDSHNYL 62

Query: 64 DITHQVTVDLPSYDTE----GGRLGQF 86
            TH   +D    + E    GG L QF
Sbjct: 63 S-THWELIDYKGKEYEKLRDGGTLVQF 88


>pdb|1JMO|A Chain A, Crystal Structure Of The Heparin Cofactor Ii-S195a
           Thrombin Complex
          Length = 480

 Score = 28.1 bits (61), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 126 DAGFDADSLDLDVLNGPGLLVDVPRDKNLTAEVLESLNIPKGVRRVLFRTLNTDRQLMFK 185
           D   D D L L+ + G  +L+ VP  K    + LE+   P+ V R      N  R+++  
Sbjct: 318 DQELDCDILQLEYVGGISMLIVVPH-KMSGMKTLEAQLTPRVVERWQKSMTNRTREVLLP 376

Query: 186 KF 187
           KF
Sbjct: 377 KF 378


>pdb|1JMJ|A Chain A, Crystal Structure Of Native Heparin Cofactor Ii
 pdb|1JMJ|B Chain B, Crystal Structure Of Native Heparin Cofactor Ii
          Length = 480

 Score = 27.7 bits (60), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 126 DAGFDADSLDLDVLNGPGLLVDVPRDKNLTAEVLESLNIPKGVRRVLFRTLNTDRQLMFK 185
           D   D D L L+ + G  +L+ VP  K    + LE+   P+ V R      N  R+++  
Sbjct: 318 DQELDCDILQLEYVGGISMLIVVPH-KMSGMKTLEAQLTPRVVERWQKSMTNRTREVLLP 376

Query: 186 KF 187
           KF
Sbjct: 377 KF 378


>pdb|3G40|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of A
           Prokaryotic Cation Chloride Cotransporter
          Length = 294

 Score = 27.7 bits (60), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 146 VDVPRDKNLTAEVLESLNIPKGVRRVLFRTLNTDRQLMFKKFDTSYVGFMADG--AKWLV 203
           V+ PR+   T + L  +  PKG  ++L    NTD++ +  +  +   GF  +G  + W +
Sbjct: 27  VEDPRELMGTFDFLRDITYPKGSVKLLGLAGNTDKENLLSQLPSISEGFQEEGVFSSWTI 86

Query: 204 ENT 206
            +T
Sbjct: 87  IDT 89


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.142    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,819,323
Number of Sequences: 62578
Number of extensions: 394211
Number of successful extensions: 690
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 684
Number of HSP's gapped (non-prelim): 11
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)