Query 023836
Match_columns 276
No_of_seqs 186 out of 1287
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 13:35:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023836.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023836hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r61_A Metal-dependent hydrola 100.0 1.8E-56 6.2E-61 392.4 20.1 202 59-276 2-204 (207)
2 2b0a_A Hypothetical protein MJ 100.0 1.9E-49 6.3E-54 342.6 15.5 180 61-276 1-185 (186)
3 2ab1_A Hypothetical protein; H 61.0 14 0.00048 28.7 5.3 56 148-216 43-98 (122)
4 2fvt_A Conserved hypothetical 51.9 19 0.00064 28.5 4.7 59 146-217 45-104 (135)
5 2fi9_A Outer membrane protein; 42.9 18 0.00063 28.1 3.3 56 147-216 48-104 (128)
6 2gm2_A Conserved hypothetical 39.1 9.9 0.00034 30.0 1.1 52 151-216 49-100 (132)
7 3cpk_A Uncharacterized protein 33.5 41 0.0014 27.1 4.0 36 168-216 89-124 (150)
8 4pga_A Glutaminase-asparaginas 18.5 1.4E+02 0.0048 27.0 5.1 51 189-241 228-279 (337)
9 3iwh_A Rhodanese-like domain p 18.0 2E+02 0.0067 20.8 5.0 17 195-212 69-85 (103)
10 1agx_A Glutaminase-asparaginas 17.3 1.6E+02 0.0055 26.4 5.1 51 189-241 222-274 (331)
No 1
>1r61_A Metal-dependent hydrolase; zinc-dependent hydrolase, structural genomics, cyclase, PSI, protein structure initiative; 2.50A {Geobacillus stearothermophilus} SCOP: c.8.8.1 PDB: 3krv_A
Probab=100.00 E-value=1.8e-56 Score=392.43 Aligned_cols=202 Identities=28% Similarity=0.519 Sum_probs=180.3
Q ss_pred CceEEEcceeccCCCCcCCCCCCccceEEeeeeeccCCceeEEeEEEEcCCcccccccccccccCcCCCCccccccCccc
Q 023836 59 GGRIFDITHQVTVDLPSYDTEGGRLGQFLRLPVSMKNGSFCNISEMKFTTHTGTHVDAPGHFFDHYFDAGFDADSLDLDV 138 (276)
Q Consensus 59 ~~kiiDLS~~i~~~mP~~p~~p~~~~~~~~~~~~~~~G~~~~~~~l~~~~HtGTHvDAP~H~~~~~~~~G~~id~i~l~~ 138 (276)
++|+||||||++++||+||++|+ +.. ....++++ + +|.+.++|++|+|||+|||+||. ++|.+++++|++.
T Consensus 2 ~m~~iDLs~~i~~~~p~~pg~~~-~~~--~~~~~~~~-~-~~~~~i~~~~H~GTH~Dap~H~~----~~g~~i~~~pl~~ 72 (207)
T 1r61_A 2 AMKVYDVTAPIYEGMPVYKNKPE-KQP--KRTTITNG-Y-VTESRIDMDVHTGTHIDAPLHMV----EGGATFETIPLND 72 (207)
T ss_dssp CCCEEECCCCBCTTCCCGGGCGG-GSC--EEEEEEET-T-EEEEEEEEETTSSSEEECCGGGS----CSSCTTCCCCCTT
T ss_pred CCEEEECcCcccCCCCCCCCCCC-eEE--EEeeecCC-c-eEEeEEEECCCCchhhchHhhcC----CCCcChhhCChhH
Confidence 46899999999999999999987 422 22233444 3 99999999999999999999998 7999999999999
Q ss_pred ccccEEEEEcCCC-CCCCHHHHhcCCCCCCCeEEEEEecCCccccccccCCCCCcccCHHHHHHHHHcCCceEEEecCCC
Q 023836 139 LNGPGLLVDVPRD-KNLTAEVLESLNIPKGVRRVLFRTLNTDRQLMFKKFDTSYVGFMADGAKWLVENTDIKLVGVDYLS 217 (276)
Q Consensus 139 ~~g~~vvlDv~~~-~~It~edl~~~~i~~g~diVL~rTg~~~~~~~~~~y~~~~Pgls~eaA~~L~e~~gik~VGiD~~S 217 (276)
|+|||||||+++. ..||.+||++++|++| |+|||||||++ ..+|..++||+++|+|+||+|+ +|++||+|++|
T Consensus 73 ~~g~~vviD~~~~~~~It~~dl~~~~i~~g-d~vlirTg~~~----~~~y~~~~pgls~eaa~~L~~~-~v~~vG~D~~s 146 (207)
T 1r61_A 73 LVGPCKLFDLTHVNDRITKDDIAHLDIQEG-DFVLFKTKNSF----EDAFHFEFIFVAEDAARYLADK-QIRGVGIDALG 146 (207)
T ss_dssp TEEEEEEEECTTCCSEECHHHHTTSCCCTT-CEEEEECGGGG----CCSCCTTCCEECHHHHHHHHHH-TCSEEECSSSC
T ss_pred ccceEEEEEEeCCCCccCHHHHHhccCCCC-cEEEEECCCCC----chhhcCCCcccCHHHHHHHHHC-CCCEEEEcCCc
Confidence 9999999999864 4799999999999876 99999999975 2347788999999999999997 99999999999
Q ss_pred CCCCCCChHHHHHHHhcCCcceEEcccCCCCCCCcEEEEEeccccCCCcccceeeEEEC
Q 023836 218 VAAFDDIISAHHELLRNREIIPVEGLKLDHVPAGLYSIHCLPLRMVGAEGSPVRCILIK 276 (276)
Q Consensus 218 vd~~~~~~p~H~~lL~~~gi~iiE~LnLd~L~~~~~~~~~~PLki~G~~GsPvR~vAi~ 276 (276)
+|+.+...++|+.||+ +|++|+|||+|++|++++|+|+|+|||++|++|||||+||+.
T Consensus 147 ~d~~~~~~~~H~~ll~-~gi~iiE~l~L~~L~~~~f~l~~~Plki~g~~gsPvR~vAi~ 204 (207)
T 1r61_A 147 IERAQEGHPTHKTLFS-AGVIIIEGLRLKDVPEGRYFMVAAPLKLVGTDAAPARVLLFD 204 (207)
T ss_dssp SCCSCTTCHHHHHHHH-TTCEEEESCCCTTCCSEEEEEEEEECCBTTCSEEEEEEEEEC
T ss_pred cCCCCCCCHHHHHHHH-cCCeEEEEeEhhcCCCCcEEEEEECccCCCCcccCeeEEEEe
Confidence 9987533399999996 899999999999999999999999999999999999999984
No 2
>2b0a_A Hypothetical protein MJ0783; structural genomics, PSI, protein STRU initiative; 1.45A {Methanocaldococcus jannaschii} SCOP: c.8.8.1
Probab=100.00 E-value=1.9e-49 Score=342.64 Aligned_cols=180 Identities=22% Similarity=0.319 Sum_probs=157.6
Q ss_pred eEEEcceeccCCCCcCCCCCCccceEEeeeeeccCCceeEEeEEEEcCCcccccccccccccCcCCCCccccc-cCccc-
Q 023836 61 RIFDITHQVTVDLPSYDTEGGRLGQFLRLPVSMKNGSFCNISEMKFTTHTGTHVDAPGHFFDHYFDAGFDADS-LDLDV- 138 (276)
Q Consensus 61 kiiDLS~~i~~~mP~~p~~p~~~~~~~~~~~~~~~G~~~~~~~l~~~~HtGTHvDAP~H~~~~~~~~G~~id~-i~l~~- 138 (276)
|+||||||+++ |+||++|+ +.. .. ++++ .+|.+.++|++|+|||+|||+||. +++ +|++.
T Consensus 1 ~~iDLs~~i~~--p~~pg~~~-~~~--~~---~~~~-g~~~~~i~~~~H~GTHiDap~H~~---------id~~ipl~~g 62 (186)
T 2b0a_A 1 EILDLTQTLIN--FPRPGDPE-LRI--IE---KKID-GFIVSEIIMGSHLCTHIDYPKHVG---------LENRIPFKDG 62 (186)
T ss_dssp CEEECBCCCCS--CCCTTSCC-CEE--EE---EEET-TEEEEEEECCTTSSSEEECGGGGT---------CCCCCSSGGG
T ss_pred CEEEeeeEecC--CcCCCCCC-cEE--EE---ecCC-cEEEEEEEecCCcccCccchhhee---------ecccccCCCC
Confidence 58999999998 99999987 422 22 2222 389999999999999999999983 899 99999
Q ss_pred -ccccEEEEEcCCCCCCCHHHHhcCCCCCCCeEEEEEecCCccccccccCCCCCcccCHHHHHHHHHcCCceEEEecCCC
Q 023836 139 -LNGPGLLVDVPRDKNLTAEVLESLNIPKGVRRVLFRTLNTDRQLMFKKFDTSYVGFMADGAKWLVENTDIKLVGVDYLS 217 (276)
Q Consensus 139 -~~g~~vvlDv~~~~~It~edl~~~~i~~g~diVL~rTg~~~~~~~~~~y~~~~Pgls~eaA~~L~e~~gik~VGiD~~S 217 (276)
|+|||||||++ .||++ +|++| |+|||||||++++. ..+|. ++||+ +|+|+||+|+ +|++||+|++|
T Consensus 63 ~~~g~~vviD~~---~It~~-----~i~~g-d~vlirTg~~~~~~-~~~~~-~~pgl-~eaa~~L~~~-~v~~vG~D~~s 129 (186)
T 2b0a_A 63 IIKGKGYCISLD---DFPGN-----KLPAC-DILLIYTGFSKYWG-RDEYF-EKIPE-IPFLDDIIKS-NIKCVGIDACT 129 (186)
T ss_dssp CEEEEEEEEETT---TCSSC-----CCCSC-SEEEEECSGGGGTT-SGGGG-GCCCC-CTTHHHHHHS-CCCEEEESSSC
T ss_pred eEEeEEEEEEEe---ccCHH-----HCCCC-cEEEEECCchhhcC-Cchhh-cCCCH-HHHHHHHHHC-CCCEEEEcCCC
Confidence 99999999994 57766 46666 99999999987642 23465 89999 9999999997 99999999999
Q ss_pred CCCCCCChHHHHHHHhcCCcceEEccc--CCCCCCCcEEEEEeccccCCCcccceeeEEEC
Q 023836 218 VAAFDDIISAHHELLRNREIIPVEGLK--LDHVPAGLYSIHCLPLRMVGAEGSPVRCILIK 276 (276)
Q Consensus 218 vd~~~~~~p~H~~lL~~~gi~iiE~Ln--Ld~L~~~~~~~~~~PLki~G~~GsPvR~vAi~ 276 (276)
+|. +|+|+.||+ +|++++|+|+ |++|++++|+++|+|||++|++|||||+||+.
T Consensus 130 ~d~----~p~H~~ll~-~gi~iiE~l~~nL~~l~~~~f~l~~~Plki~g~~gsP~R~vAi~ 185 (186)
T 2b0a_A 130 IGG----FEEHKRLLS-NNILIIENLNENLKNLVGKSFYFLGLPLKIFDIDASPIRCIAIL 185 (186)
T ss_dssp SSS----HHHHHHHHH-TTCEEEECBCGGGGGGBTCEEEEEEEECSCCSCSEEEEEEEEEE
T ss_pred CCC----cHHHHHHHH-CCcEEEEehhhhHhhCCCCcEEEEEECcccCCCcccCeEEEEEc
Confidence 997 999999996 8999999995 99999999999999999999999999999983
No 3
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=61.00 E-value=14 Score=28.67 Aligned_cols=56 Identities=9% Similarity=0.150 Sum_probs=40.3
Q ss_pred cCCCCCCCHHHHhcCCCCCCCeEEEEEecCCccccccccCCCCCcccCHHHHHHHHHcCCceEEEecCC
Q 023836 148 VPRDKNLTAEVLESLNIPKGVRRVLFRTLNTDRQLMFKKFDTSYVGFMADGAKWLVENTDIKLVGVDYL 216 (276)
Q Consensus 148 v~~~~~It~edl~~~~i~~g~diVL~rTg~~~~~~~~~~y~~~~Pgls~eaA~~L~e~~gik~VGiD~~ 216 (276)
+++-..|+.++++.+- .+..|+|+|-||-..+ +-++++..++|.++ ||.+--.||.
T Consensus 43 ~~~~~~l~~~~l~~ll-~~~~evliiGtG~~~~-----------~~~~~~~~~~l~~~-gI~ve~m~T~ 98 (122)
T 2ab1_A 43 TEHSPGVQPADVKEVV-EKGVQTLVIGRGMSEA-----------LKVPSSTVEYLKKH-GIDVRVLQTE 98 (122)
T ss_dssp CCSSSCCCHHHHHHHH-TTCCSEEEEEECSSCC-----------SCCCHHHHHHHHHT-TCEEEEECHH
T ss_pred cCChhHCCHHHHHHHh-hCCCCEEEECCCCCCc-----------cCCCHHHHHHHHHc-CCEEEEeCHH
Confidence 3345579999998752 2335999999996432 13579999999997 9887777664
No 4
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=51.85 E-value=19 Score=28.48 Aligned_cols=59 Identities=10% Similarity=0.017 Sum_probs=41.4
Q ss_pred EEcCCCCCCCHHHHhcC-CCCCCCeEEEEEecCCccccccccCCCCCcccCHHHHHHHHHcCCceEEEecCCC
Q 023836 146 VDVPRDKNLTAEVLESL-NIPKGVRRVLFRTLNTDRQLMFKKFDTSYVGFMADGAKWLVENTDIKLVGVDYLS 217 (276)
Q Consensus 146 lDv~~~~~It~edl~~~-~i~~g~diVL~rTg~~~~~~~~~~y~~~~Pgls~eaA~~L~e~~gik~VGiD~~S 217 (276)
.++.+...|+.++++.+ ...+..|+|+|-||-..+ + ++++..++|.++ ||.+--.||.+
T Consensus 45 W~~~~~~~l~~e~l~~l~~~~p~pevliiGTG~~~~----------~--l~p~l~~~l~~~-GI~vE~M~T~a 104 (135)
T 2fvt_A 45 WDVTKPEQIDRYSLQRVFDNANAIDTLIVGTGADVW----------I--APRQLREALRGV-NVVLDTMQTGP 104 (135)
T ss_dssp ESCCSTTCCCTTTTHHHHHTTTSCSEEEEECTTSCC----------C--CCHHHHHHHHTT-TCEEEEECHHH
T ss_pred cCCCCcccCCHHHHHHHHhcCCCCCEEEEcCCCCCC----------c--CCHHHHHHHHHc-CCEEEEeCHHH
Confidence 34445568888888764 222235899999995432 2 579999999997 98877777653
No 5
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=42.90 E-value=18 Score=28.13 Aligned_cols=56 Identities=14% Similarity=-0.021 Sum_probs=40.1
Q ss_pred EcCCCCCCCHHHHhcC-CCCCCCeEEEEEecCCccccccccCCCCCcccCHHHHHHHHHcCCceEEEecCC
Q 023836 147 DVPRDKNLTAEVLESL-NIPKGVRRVLFRTLNTDRQLMFKKFDTSYVGFMADGAKWLVENTDIKLVGVDYL 216 (276)
Q Consensus 147 Dv~~~~~It~edl~~~-~i~~g~diVL~rTg~~~~~~~~~~y~~~~Pgls~eaA~~L~e~~gik~VGiD~~ 216 (276)
++.+ ..|+.++++.+ ...+..|+|+|-||-..+ -++++..++|.++ ||.+--.||.
T Consensus 48 ~~~~-~~l~~~~l~~l~~~~p~pevliiGtG~~~~------------~l~p~~~~~l~~~-GI~vE~m~T~ 104 (128)
T 2fi9_A 48 DMTG-PVPTQEDISRVLEESDQIEVLLIGTGVELL------------RLPEELRVLLWEK-RISSDTMSTG 104 (128)
T ss_dssp CCSS-SSCCTGGGHHHHHTGGGCSEEEEECTTSCC------------CCCHHHHHHHHHT-TCEEEEECHH
T ss_pred CCCc-CCCCHHHHHHHHhcCCCCCEEEECCCCCCC------------CCCHHHHHHHHHc-CCEEEEeCHH
Confidence 4445 78899998765 222224899999996422 2578999999997 9987777764
No 6
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=39.13 E-value=9.9 Score=29.96 Aligned_cols=52 Identities=12% Similarity=-0.014 Sum_probs=37.3
Q ss_pred CCCCCHHHHhcCCCCCCCeEEEEEecCCccccccccCCCCCcccCHHHHHHHHHcCCceEEEecCC
Q 023836 151 DKNLTAEVLESLNIPKGVRRVLFRTLNTDRQLMFKKFDTSYVGFMADGAKWLVENTDIKLVGVDYL 216 (276)
Q Consensus 151 ~~~It~edl~~~~i~~g~diVL~rTg~~~~~~~~~~y~~~~Pgls~eaA~~L~e~~gik~VGiD~~ 216 (276)
...|+.++++.+-..+ .|+|+|-||-..+ -++++..++|.++ ||.+--.||.
T Consensus 49 ~~~l~~e~l~~ll~~~-pevliiGTG~~~~------------~l~p~~~~~l~~~-GI~vE~m~T~ 100 (132)
T 2gm2_A 49 LGQLQPAHMDAVLALN-PAVILLGTGERQQ------------FPSTDVLAACLTR-GIGLEAMTNA 100 (132)
T ss_dssp GGGCCTTTSHHHHHHC-CSEEEEECTTSCC------------CCCHHHHHHHHHH-TCEEEEECHH
T ss_pred cccCCHHHHHHHHhcC-CCEEEECCCCCCC------------cCCHHHHHHHHHc-CCEEEEeCHH
Confidence 4567887776542222 4899999995432 2579999999997 9887777764
No 7
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=33.47 E-value=41 Score=27.11 Aligned_cols=36 Identities=11% Similarity=0.039 Sum_probs=28.0
Q ss_pred CeEEEEEecCCccccccccCCCCCcccCHHHHHHHHHcCCceEEEecCC
Q 023836 168 VRRVLFRTLNTDRQLMFKKFDTSYVGFMADGAKWLVENTDIKLVGVDYL 216 (276)
Q Consensus 168 ~diVL~rTg~~~~~~~~~~y~~~~Pgls~eaA~~L~e~~gik~VGiD~~ 216 (276)
.|+|+|-||-..+ -++++..++|.++ ||.+--.||.
T Consensus 89 pEvliiGTG~~~~------------~l~p~~~~~L~~~-GIgvE~M~T~ 124 (150)
T 3cpk_A 89 PEVLLVGTGRRQH------------LLGPEQVRPLLAM-GVGVEAMDTQ 124 (150)
T ss_dssp CSEEEEECTTSCC------------CCCHHHHHHHHTT-TCEEEEECHH
T ss_pred CCEEEEcCCCCCC------------CCCHHHHHHHHHc-CCEEEEeCHH
Confidence 5899999996432 2578999999997 9887777764
No 8
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A {Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A* 3pga_1
Probab=18.53 E-value=1.4e+02 Score=26.97 Aligned_cols=51 Identities=16% Similarity=0.103 Sum_probs=38.9
Q ss_pred CCCcccCHHHHHHHHHcCCceEEEecCCCCCCCC-CChHHHHHHHhcCCcceEE
Q 023836 189 TSYVGFMADGAKWLVENTDIKLVGVDYLSVAAFD-DIISAHHELLRNREIIPVE 241 (276)
Q Consensus 189 ~~~Pgls~eaA~~L~e~~gik~VGiD~~Svd~~~-~~~p~H~~lL~~~gi~iiE 241 (276)
.-|||++.+..+.+.+. +++.+-+.+....... ...+.=+.+.+ +||+++=
T Consensus 228 ~~~pG~~~~~l~~~~~~-g~~GiVle~~G~Gn~p~~~~~~l~~a~~-~Gi~VV~ 279 (337)
T 4pga_A 228 YSYGNVTDTAYKALAQN-GAKALIHAGTGNGSVSSRVVPALQQLRK-NGTQIIR 279 (337)
T ss_dssp ECCTTCCSHHHHHHHHT-TCSEEEEEEBTTTBCCTTTHHHHHHHHH-TTCEEEE
T ss_pred EECCCCCHHHHHHHHhc-CCCEEEEEEeCCCCCCHHHHHHHHHHHH-CCCEEEE
Confidence 46899999999999996 8999888888776543 34455555665 7888874
No 9
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=17.95 E-value=2e+02 Score=20.75 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=13.4
Q ss_pred CHHHHHHHHHcCCceEEE
Q 023836 195 MADGAKWLVENTDIKLVG 212 (276)
Q Consensus 195 s~eaA~~L~e~~gik~VG 212 (276)
|..+|++|.+. |.+.+-
T Consensus 69 S~~aa~~L~~~-G~~~~~ 85 (103)
T 3iwh_A 69 SAKVVEYLEAN-GIDAVN 85 (103)
T ss_dssp HHHHHHHHHTT-TCEEEE
T ss_pred HHHHHHHHHHc-CCCEEE
Confidence 57889999987 887663
No 10
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A {Acinetobacter glutaminasificans} SCOP: c.88.1.1
Probab=17.27 E-value=1.6e+02 Score=26.40 Aligned_cols=51 Identities=10% Similarity=0.078 Sum_probs=37.3
Q ss_pred CCCcccCHHHHHHHHHcCCceEEEecCCCCCCCCCC-hHHHHHHH-hcCCcceEE
Q 023836 189 TSYVGFMADGAKWLVENTDIKLVGVDYLSVAAFDDI-ISAHHELL-RNREIIPVE 241 (276)
Q Consensus 189 ~~~Pgls~eaA~~L~e~~gik~VGiD~~Svd~~~~~-~p~H~~lL-~~~gi~iiE 241 (276)
.-|||++.+..+.+.+. +++.+-+.+......... .+.=+.+. + +||+++=
T Consensus 222 ~~~pG~~~~~l~~~~~~-g~~GiVle~~G~Gn~p~~~~~~l~~a~~~-~gi~VV~ 274 (331)
T 1agx_A 222 YGSDNMMPDAYQAFAKA-GVKAIIHAGTGNGSMANYLVPEVRKLHDE-QGLQIVR 274 (331)
T ss_dssp ECCSSCCTHHHHHHHTT-TCSEEEEEEBTTTBCCTTHHHHHHHHHHT-TCCEEEE
T ss_pred EeCCCCCHHHHHHHHhC-CCCEEEEeeECCCCCCHHHHHHHHHHHHc-CCCEEEE
Confidence 45899999999999986 899888888877665433 34334343 4 7888763
Done!