BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023838
(276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XMB|A Chain A, X-ray Structure Of Iaa-aminoacid Hydrolase From
Arabidopsis Thaliana Gene At5g56660
pdb|2Q43|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Iaa-Aminoacid Hydrolase From Arabidopsis Thaliana Gene
At5g56660
Length = 418
Score = 279 bits (713), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 132/214 (61%), Positives = 164/214 (76%)
Query: 38 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVV 97
DW+V +RR+IHENPEL +EE TS LIR EL+ +GI Y YPVA TG++ IG+G P V
Sbjct: 28 DWMVKIRRKIHENPELGYEELETSKLIRSELELIGIKYRYPVAITGVIGYIGTGEPPFVA 87
Query: 98 LRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILF 157
LRADMDALP+QE VEWEHKSKI GKMHACGHD H TMLLGAAK++H+ + L+GTV ++F
Sbjct: 88 LRADMDALPIQEGVEWEHKSKIAGKMHACGHDGHVTMLLGAAKILHEHRHHLQGTVVLIF 147
Query: 158 QPAEEGGAGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGR 217
QPAEEG +GA M +EGAL + EAIFG+H+ IP G AS +G LA VF + G+
Sbjct: 148 QPAEEGLSGAKKMREEGALKNVEAIFGIHLSARIPFGKAASRAGSFLAGAGVFEAVITGK 207
Query: 218 GGHAAMPHSTIDPILTASSVILALQQLISREADP 251
GGHAA+P TIDP++ ASS++L+LQQL+SRE DP
Sbjct: 208 GGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDP 241
>pdb|1YSJ|A Chain A, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
pdb|1YSJ|B Chain B, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
Length = 404
Score = 190 bits (483), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 137/210 (65%), Gaps = 2/210 (0%)
Query: 40 LVSVRRQIHENPELLFEEHNTSALIRRELDKLGIP-YAYPVAKTGIVAQI-GSGSRPVVV 97
L++ RR +HE+PEL F+E T+ IRR L++ I P KTG++A+I G PV+
Sbjct: 34 LINXRRDLHEHPELSFQEVETTKKIRRWLEEEQIEILDVPQLKTGVIAEIKGREDGPVIA 93
Query: 98 LRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILF 157
+RAD+DALP+QE SK+DG HACGHD HT ++G A L++QR+ +LKGTVR +F
Sbjct: 94 IRADIDALPIQEQTNLPFASKVDGTXHACGHDFHTASIIGTAXLLNQRRAELKGTVRFIF 153
Query: 158 QPAEEGGAGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGR 217
QPAEE AGA +++ G L AIFG H +P G+I GP A+ F + ++G+
Sbjct: 154 QPAEEIAAGARKVLEAGVLNGVSAIFGXHNKPDLPVGTIGVKEGPLXASVDRFEIVIKGK 213
Query: 218 GGHAAMPHSTIDPILTASSVILALQQLISR 247
GGHA++P+++IDPI A +I LQ ++SR
Sbjct: 214 GGHASIPNNSIDPIAAAGQIISGLQSVVSR 243
>pdb|4EWT|A Chain A, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|C Chain C, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|D Chain D, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|B Chain B, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
Length = 392
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 119/231 (51%), Gaps = 9/231 (3%)
Query: 27 NQVMISAQQDKDW-LVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIV 85
NQ +I + K+ ++ +RR +H++PEL F E T+ I + V GI
Sbjct: 2 NQQLIETLKSKEGKMIEIRRYLHQHPELSFHEDETAKYIAEFYKGKDVEVETNVGPRGIK 61
Query: 86 AQIGSGSRP--VVVLRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIH 143
I SG +P + +RAD DALP+ E S+ G MHACGHD HT +L A+ +
Sbjct: 62 VTIDSG-KPGKTLAIRADFDALPITEDTGLSFASQNKGVMHACGHDAHTAYMLVLAETLA 120
Query: 144 QRKDKLKGTVRILFQPAEE---GGAGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASIS 200
+ KD G V ++ QPAEE GGA MI+ G L + + G+H+ + TG +
Sbjct: 121 EMKDSFTGKVVVIHQPAEEVPPGGAKT--MIENGVLDGVDHVLGVHVMSTMKTGKVYYRP 178
Query: 201 GPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADP 251
G + F +KV+G+GGH + PH D I+ S + ALQ ++SR P
Sbjct: 179 GYVQTGRAFFKLKVQGKGGHGSSPHMANDAIVAGSYFVTALQTVVSRRLSP 229
>pdb|3IO1|A Chain A, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
pdb|3IO1|B Chain B, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
Length = 445
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 80/154 (51%), Gaps = 9/154 (5%)
Query: 76 AYPVAKTGIVAQIGSGS-RPVVVLRADMDALPLQELVEWEHKSKID-------GKMHACG 127
A+ G+VA + +G P + R D DAL L E + H+ D G HACG
Sbjct: 91 AFEGGFAGVVATLDTGRPGPTLAFRVDXDALDLNEQHDDSHRPHRDHFASCNAGXXHACG 150
Query: 128 HDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGGAGAFHMIKEGALGDSEAIFGMHI 187
HD HT + LG A ++ Q +L G ++++FQPAEEG GA + G + D + +HI
Sbjct: 151 HDGHTAIGLGLAHVLKQYAAQLNGVIKLIFQPAEEGTRGARAXVAAGVVDDVDYFTAIHI 210
Query: 188 DVGIPTGSIASISGPHLAATSVFNVKVEGRGGHA 221
G+P G++ G + AT+ F+V+ G HA
Sbjct: 211 GTGVPAGTVV-CGGDNFXATTKFDVQFSGVAAHA 243
>pdb|3RAM|A Chain A, Crystal Structure Of Hmra
pdb|3RAM|B Chain B, Crystal Structure Of Hmra
pdb|3RAM|C Chain C, Crystal Structure Of Hmra
pdb|3RAM|D Chain D, Crystal Structure Of Hmra
Length = 394
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 65/141 (46%), Gaps = 19/141 (13%)
Query: 28 QVMISAQQDKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVA--KTGIV 85
Q++ + +K + + +IHE PEL EE S + L + +A TG +
Sbjct: 6 QILDYIETNKYSYIEISHRIHERPELGNEEIFASRTLIDRLKEHDFEIETEIAGHATGFI 65
Query: 86 AQIGSG-SRPVVVLRADMDALPLQELVEWEHKSKIDGKMHACGHD-VHTTMLLGAAKLIH 143
A SG P + A+ DALP G HACGH+ + T +LGA L
Sbjct: 66 ATYDSGLDGPAIGFLAEYDALP--------------GLGHACGHNIIGTASVLGAIGL-K 110
Query: 144 QRKDKLKGTVRILFQPAEEGG 164
Q D++ G V +L PAEEGG
Sbjct: 111 QVIDQIGGKVVVLGCPAEEGG 131
>pdb|3IC1|A Chain A, Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate
Desuccinylase From Haemophilus Influenzae
pdb|3IC1|B Chain B, Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate
Desuccinylase From Haemophilus Influenzae
pdb|3ISZ|A Chain A, Crystal Structure Of Mono-zinc Form Of
Succinyl-diaminopimelate Desuccinylase From Haemophilus
Influenzae
pdb|3ISZ|B Chain B, Crystal Structure Of Mono-zinc Form Of
Succinyl-diaminopimelate Desuccinylase From Haemophilus
Influenzae
Length = 377
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 101/227 (44%), Gaps = 20/227 (8%)
Query: 37 KDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAY-PVAKT-GIVAQIGSGSRP 94
K+ +VS+ + + P + + +I L+KLG + P T + A+ G+ S P
Sbjct: 2 KEKVVSLAQDLIRRPSISPNDEGCQQIIAERLEKLGFQIEWMPFNDTLNLWAKHGT-SEP 60
Query: 95 VVVLRADMDALPLQELVEWEH----KSKIDGKMHACGH-DVHTTM--LLGAAKLIHQRKD 147
V+ D +P + +W IDG ++ G D+ ++ ++ AA+ +
Sbjct: 61 VIAFAGHTDVVPTGDENQWSSPPFSAEIIDGMLYGRGAADMKGSLAAMIVAAEEYVKANP 120
Query: 148 KLKGTVRILFQPAEEGGA--GAFHMIKEGALGDSEAIFGMHIDVGIPTG--SIASISGPH 203
KGT+ +L EE A G H+++ D + + M VG P+ ++ +
Sbjct: 121 NHKGTIALLITSDEEATAKDGTIHVVETLMARDEKITYCM---VGEPSSAKNLGDVVKNG 177
Query: 204 LAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREAD 250
+ N+ ++G GH A PH +PI A+ L LQ+L + + D
Sbjct: 178 RRGSITGNLYIQGIQGHVAYPHLAENPIHKAA---LFLQELTTYQWD 221
>pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
pdb|1VGY|B Chain B, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
Length = 393
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 30/176 (17%)
Query: 94 PVVVLRADMDALPLQELVEWE----HKSKIDGKMHACGH-DVHTTM--LLGAAKLIHQRK 146
PVV D +P + +W+ ++ DG+++ G D T++ + A + +
Sbjct: 63 PVVCFAGHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADXKTSIACFVTACERFVAKH 122
Query: 147 DKLKGTVRILFQPAEEGGA------------GAFHMIKEGALGDSEAIFGMHIDVGIPTG 194
+G++ +L EEG A +I +G+ A+ + I G
Sbjct: 123 PNHQGSIALLITSDEEGDALDGTTKVVDVLKARDELIDYCIVGEPTAV--DKLGDXIKNG 180
Query: 195 SIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREAD 250
S+SG N+ V+G+ GH A PH I+P+ T + +L L Q + E +
Sbjct: 181 RRGSLSG---------NLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGN 227
>pdb|1FNO|A Chain A, Peptidase T (Tripeptidase)
Length = 417
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 151 GTVRILFQPAEEGGAGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVF 210
G +++ F P EE G GA H D EA FG + G + + + A SV
Sbjct: 163 GDIKVAFTPDEEVGKGAKHF-------DVEA-FGAQWAYTVDGGGVGELEFENFNAASV- 213
Query: 211 NVKVEGRGGH 220
N+K+ G H
Sbjct: 214 NIKIVGNNVH 223
>pdb|4EH1|A Chain A, Crystal Structure Of The Flavohem-Like-FadNAD BINDING
DOMAIN OF Nitric Oxide Dioxygenase From Vibrio Cholerae
O1 Biovar El Tor
pdb|4EH1|B Chain B, Crystal Structure Of The Flavohem-Like-FadNAD BINDING
DOMAIN OF Nitric Oxide Dioxygenase From Vibrio Cholerae
O1 Biovar El Tor
Length = 243
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 23/129 (17%)
Query: 93 RPVVVLRADMDALPLQELVEWEHKSKIDG--KMHACGHDVHTTMLLGAAKLIHQR----- 145
RPVV++ A + A P+Q ++ K G ++AC T A+LI Q+
Sbjct: 115 RPVVLISAGVGATPMQAILHTLAKQNKSGVTYLYACNSAKEHTFAQETAQLIAQQGWMQQ 174
Query: 146 --------KDKLKGTVRI--LFQPAEEGGAGAFHMIKEGALGDSEAIFGMHIDVGIPTGS 195
D L+G +++ L P E+G F++ G +G + + + +G+
Sbjct: 175 VWYRDESADDVLQGEMQLAELILPIEDGD---FYLC--GPIGFMQYVVKQLLALGVDKAR 229
Query: 196 I-ASISGPH 203
I + GPH
Sbjct: 230 IHYEVFGPH 238
>pdb|1VIX|A Chain A, Crystal Structure Of A Putative Peptidase T
pdb|1VIX|B Chain B, Crystal Structure Of A Putative Peptidase T
Length = 420
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 144 QRKDKLKGTVRILFQPAEEGGAGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPH 203
Q+K G +R+ F P EE G GA H D +A F + G + + +
Sbjct: 158 QQKKIPHGDIRVAFTPDEEVGKGAKHF-------DVDA-FDARWAYTVDGGGVGELEFEN 209
Query: 204 LAATSVFNVKVEGRGGH 220
A SV N+K+ G H
Sbjct: 210 FNAASV-NIKIVGNNVH 225
>pdb|2VUN|A Chain A, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|B Chain B, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|C Chain C, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|D Chain D, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
Length = 386
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 84 IVAQIGSGSRPVVVLRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIH 143
IV ++G G+ ++ DA P+ VEW HK +MH G + + + A +I
Sbjct: 161 IVGEVGLGT-----IKNPEDAAPM---VEWAHKHGFKVQMHTGGTSIPGSSTVTADDVIK 212
Query: 144 QRKD 147
+ D
Sbjct: 213 TKPD 216
>pdb|3BQI|A Chain A, Structure Of A Chondroitin Sulphate Binding Dbl3x From A
Var2csa Encoded Pfemp1 Protein
pdb|3BQK|A Chain A, Structure Of A Chondroitin Sulphate Binding Dbl3x From A
Var2csa Encoded Pfemp1 Protein In Complex With Sulphate
pdb|3BQL|A Chain A, Structure Of A Chondroitin Sulphate Binding Dbl3x Domain
From A Var2csa Encoded Pfemp1 Protein
Length = 360
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 43 VRRQIHENPELLFEEHNTSALIRRELDKLG 72
++ IH+ ELL+E H+T I + DK G
Sbjct: 83 IKNAIHKETELLYEYHDTGTAIISKNDKKG 112
>pdb|3CML|A Chain A, Crystal Structure Of The Dbl3x Domain Of The Plasmodium
Falcipurum Var2csa Protein
pdb|3CPZ|A Chain A, Crystal Structure Of Var2csa Dbl3x Domain In The Presence
Of Dodecasaccharide Of Csa
Length = 362
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 43 VRRQIHENPELLFEEHNTSALIRRELDKLG 72
++ IH+ ELL+E H+T I + DK G
Sbjct: 82 IKNAIHKETELLYEYHDTGTAIISKNDKKG 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,894,080
Number of Sequences: 62578
Number of extensions: 270380
Number of successful extensions: 722
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 708
Number of HSP's gapped (non-prelim): 18
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)