Query 023838
Match_columns 276
No_of_seqs 159 out of 1598
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 07:01:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023838.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023838hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02693 IAA-amino acid hydrol 100.0 4.9E-48 1.1E-52 358.5 31.4 250 26-276 33-284 (437)
2 PLN02280 IAA-amino acid hydrol 100.0 4.4E-46 9.5E-51 347.9 29.4 243 33-276 92-334 (478)
3 COG1473 AbgB Metal-dependent a 100.0 1.1E-43 2.4E-48 321.3 27.8 246 29-276 4-252 (392)
4 TIGR01891 amidohydrolases amid 100.0 5.5E-43 1.2E-47 318.5 26.5 235 41-276 2-238 (363)
5 PRK06915 acetylornithine deace 100.0 1.2E-42 2.6E-47 322.2 28.5 242 24-276 3-282 (422)
6 PRK08588 succinyl-diaminopimel 100.0 3.6E-41 7.8E-46 308.0 26.2 229 38-276 2-244 (377)
7 PRK06837 acetylornithine deace 100.0 7.4E-41 1.6E-45 310.6 28.4 246 20-276 2-287 (427)
8 PRK13004 peptidase; Reviewed 100.0 5.5E-40 1.2E-44 302.4 28.2 241 26-276 3-254 (399)
9 PRK13013 succinyl-diaminopimel 100.0 5.9E-40 1.3E-44 304.6 27.9 239 28-276 4-289 (427)
10 TIGR03526 selenium_YgeY putati 100.0 1.4E-39 3.1E-44 299.2 28.3 239 28-276 3-252 (395)
11 TIGR03320 ygeY M20/DapE family 100.0 1.7E-39 3.6E-44 298.8 27.8 240 27-276 2-252 (395)
12 PRK06133 glutamate carboxypept 100.0 3.5E-39 7.5E-44 298.0 29.5 242 21-276 20-275 (410)
13 PRK07338 hypothetical protein; 100.0 3.3E-38 7.2E-43 290.8 28.4 237 25-276 4-268 (402)
14 PRK13983 diaminopimelate amino 100.0 1.4E-38 3E-43 292.8 25.2 237 35-276 2-271 (400)
15 PRK13009 succinyl-diaminopimel 100.0 3.2E-38 7E-43 288.2 25.9 234 39-276 3-250 (375)
16 PRK07522 acetylornithine deace 100.0 2.8E-38 6.2E-43 289.5 24.8 227 38-276 4-253 (385)
17 PRK08596 acetylornithine deace 100.0 8.3E-38 1.8E-42 289.7 27.7 237 28-276 3-273 (421)
18 TIGR01246 dapE_proteo succinyl 100.0 5E-38 1.1E-42 286.5 25.2 232 41-276 2-247 (370)
19 TIGR01892 AcOrn-deacetyl acety 100.0 6.7E-38 1.4E-42 284.9 25.6 222 42-276 1-243 (364)
20 TIGR01910 DapE-ArgE acetylorni 100.0 2.5E-38 5.3E-43 289.1 22.6 227 42-276 2-253 (375)
21 PRK05111 acetylornithine deace 100.0 7E-38 1.5E-42 286.8 25.3 225 38-276 5-256 (383)
22 TIGR01900 dapE-gram_pos succin 100.0 6.2E-38 1.4E-42 286.2 23.6 225 43-276 1-252 (373)
23 TIGR01880 Ac-peptdase-euk N-ac 100.0 2.2E-37 4.7E-42 285.2 27.1 234 38-276 9-268 (400)
24 PRK07473 carboxypeptidase; Pro 100.0 3.7E-37 8.1E-42 281.3 27.4 225 37-276 10-249 (376)
25 PRK08201 hypothetical protein; 100.0 3.6E-37 7.8E-42 288.2 25.4 215 26-243 2-238 (456)
26 PRK09133 hypothetical protein; 100.0 3.9E-37 8.6E-42 289.1 24.8 233 37-276 36-339 (472)
27 PRK13007 succinyl-diaminopimel 100.0 3.2E-36 6.9E-41 272.8 25.4 223 36-276 5-238 (352)
28 PRK06446 hypothetical protein; 100.0 1.8E-36 3.9E-41 282.0 22.8 203 38-244 2-220 (436)
29 PRK07907 hypothetical protein; 100.0 4.7E-36 1E-40 280.1 25.6 244 27-276 7-314 (449)
30 PRK08737 acetylornithine deace 100.0 1.2E-35 2.5E-40 270.2 24.6 216 36-276 4-240 (364)
31 PRK07906 hypothetical protein; 100.0 1.1E-35 2.3E-40 276.1 24.1 233 40-276 1-297 (426)
32 PRK08651 succinyl-diaminopimel 100.0 1.5E-35 3.2E-40 272.4 24.7 229 34-276 2-261 (394)
33 PRK09104 hypothetical protein; 100.0 3.7E-35 8E-40 275.2 25.8 214 27-243 6-246 (464)
34 PRK00466 acetyl-lysine deacety 100.0 6.6E-35 1.4E-39 263.8 24.7 209 37-276 9-222 (346)
35 PRK08262 hypothetical protein; 100.0 1.7E-35 3.7E-40 279.0 19.9 236 33-276 39-352 (486)
36 PRK08652 acetylornithine deace 100.0 9.5E-35 2.1E-39 262.5 22.7 215 38-276 2-222 (347)
37 PRK04443 acetyl-lysine deacety 100.0 1.8E-34 3.9E-39 261.2 24.3 216 37-276 5-227 (348)
38 PRK07079 hypothetical protein; 100.0 7.9E-34 1.7E-38 266.5 25.4 248 22-276 3-325 (469)
39 TIGR01883 PepT-like peptidase 100.0 1.4E-33 3.1E-38 256.3 22.4 219 40-276 2-236 (361)
40 COG0624 ArgE Acetylornithine d 100.0 5.8E-33 1.3E-37 256.5 24.9 239 31-276 6-277 (409)
41 TIGR01886 dipeptidase dipeptid 100.0 8.6E-33 1.9E-37 259.0 24.3 230 29-265 4-336 (466)
42 PRK07205 hypothetical protein; 100.0 1.7E-32 3.7E-37 255.9 25.4 209 34-243 7-273 (444)
43 PRK07318 dipeptidase PepV; Rev 100.0 2.5E-32 5.4E-37 256.2 25.0 232 28-266 4-338 (466)
44 TIGR01902 dapE-lys-deAc N-acet 100.0 7.3E-32 1.6E-36 243.0 23.0 209 42-276 1-213 (336)
45 PRK13381 peptidase T; Provisio 100.0 4.9E-32 1.1E-36 249.9 22.2 217 39-265 2-268 (404)
46 PRK15026 aminoacyl-histidine d 100.0 1.4E-31 3E-36 251.0 25.3 219 37-276 9-262 (485)
47 KOG2275 Aminoacylase ACY1 and 100.0 1.5E-31 3.3E-36 236.5 22.7 234 37-275 24-284 (420)
48 PRK05469 peptidase T; Provisio 100.0 2.1E-31 4.6E-36 246.0 21.3 219 38-265 2-270 (408)
49 TIGR01882 peptidase-T peptidas 100.0 8.6E-32 1.9E-36 248.7 18.3 223 38-276 3-276 (410)
50 PRK12892 allantoate amidohydro 100.0 4.9E-31 1.1E-35 243.8 23.2 220 37-276 9-283 (412)
51 PRK12893 allantoate amidohydro 100.0 1.6E-30 3.4E-35 240.5 23.5 220 37-276 9-282 (412)
52 TIGR01893 aa-his-dipept aminoa 100.0 2.9E-30 6.2E-35 242.8 24.3 221 38-276 4-256 (477)
53 PRK09290 allantoate amidohydro 100.0 1.9E-30 4E-35 240.1 22.5 218 37-276 6-283 (413)
54 PRK06156 hypothetical protein; 100.0 2.7E-30 5.9E-35 245.0 23.7 206 33-243 41-334 (520)
55 TIGR01887 dipeptidaselike dipe 100.0 1.6E-29 3.5E-34 235.4 25.6 222 38-265 2-324 (447)
56 PRK12891 allantoate amidohydro 100.0 1.6E-29 3.4E-34 234.0 23.8 218 39-276 11-282 (414)
57 PRK12890 allantoate amidohydro 100.0 7.6E-29 1.6E-33 229.4 24.8 217 38-276 9-284 (414)
58 TIGR01879 hydantase amidase, h 100.0 7.9E-28 1.7E-32 221.7 22.9 205 52-276 25-275 (401)
59 PRK13799 unknown domain/N-carb 99.9 8.3E-26 1.8E-30 216.8 23.7 221 38-276 181-461 (591)
60 PRK08554 peptidase; Reviewed 99.9 6.8E-26 1.5E-30 210.7 21.7 199 39-243 2-235 (438)
61 TIGR03176 AllC allantoate amid 99.9 3.4E-25 7.5E-30 204.3 23.9 220 38-276 3-276 (406)
62 PRK13590 putative bifunctional 99.9 2.3E-25 4.9E-30 213.9 22.6 218 38-276 181-459 (591)
63 KOG2276 Metalloexopeptidases [ 99.9 1E-23 2.2E-28 185.6 18.5 214 27-243 5-252 (473)
64 COG4187 RocB Arginine degradat 99.8 5.8E-18 1.3E-22 150.8 15.7 206 37-243 7-262 (553)
65 PRK10199 alkaline phosphatase 99.7 5E-15 1.1E-19 131.9 19.5 126 43-173 40-188 (346)
66 TIGR03106 trio_M42_hydro hydro 99.6 4.9E-14 1.1E-18 126.8 15.0 130 37-167 2-223 (343)
67 PF01546 Peptidase_M20: Peptid 99.6 7E-15 1.5E-19 121.2 7.6 86 97-184 1-97 (189)
68 COG2195 PepD Di- and tripeptid 99.5 1.4E-13 3.1E-18 125.5 9.8 223 37-274 4-279 (414)
69 PRK09961 exoaminopeptidase; Pr 99.4 7.1E-12 1.5E-16 113.1 16.6 142 41-188 3-223 (344)
70 COG1363 FrvX Cellulase M and r 99.4 9.9E-12 2.2E-16 111.1 15.1 144 38-187 2-236 (355)
71 TIGR03107 glu_aminopep glutamy 99.4 2.2E-11 4.7E-16 109.8 15.7 142 42-189 2-236 (350)
72 PF07687 M20_dimer: Peptidase 99.4 2.2E-12 4.7E-17 97.4 7.7 73 203-276 2-79 (111)
73 PRK09864 putative peptidase; P 99.3 4.1E-11 8.9E-16 108.0 15.8 140 41-189 3-231 (356)
74 KOG2194 Aminopeptidases of the 98.6 5.8E-07 1.2E-11 87.6 11.4 132 38-184 57-222 (834)
75 PF04389 Peptidase_M28: Peptid 98.2 6E-06 1.3E-10 67.5 7.0 80 95-185 2-87 (179)
76 PF05343 Peptidase_M42: M42 gl 97.9 6.5E-05 1.4E-09 66.4 8.8 63 121-188 126-191 (292)
77 KOG3946 Glutaminyl cyclase [Po 96.9 0.017 3.7E-07 50.0 11.5 125 38-173 51-200 (338)
78 KOG2526 Predicted aminopeptida 96.9 0.018 3.9E-07 52.6 11.7 114 62-186 165-304 (555)
79 COG2234 Iap Predicted aminopep 96.5 0.0077 1.7E-07 56.2 7.1 65 94-175 209-275 (435)
80 KOG2195 Transferrin receptor a 96.3 0.014 3E-07 57.4 7.9 76 82-173 339-420 (702)
81 PF05450 Nicastrin: Nicastrin; 95.3 0.14 3E-06 43.9 8.9 66 94-172 1-73 (234)
82 PF00883 Peptidase_M17: Cytoso 92.6 1.7 3.8E-05 38.7 10.6 109 42-162 2-140 (311)
83 PRK00913 multifunctional amino 92.1 5.3 0.00012 37.9 13.9 122 38-163 171-310 (483)
84 cd00433 Peptidase_M17 Cytosol 92.0 9.2 0.0002 36.3 15.3 122 38-163 154-296 (468)
85 PRK05015 aminopeptidase B; Pro 87.0 20 0.00044 33.3 13.0 117 39-163 101-247 (424)
86 KOG2597 Predicted aminopeptida 84.6 13 0.00028 35.3 10.7 124 38-163 189-331 (513)
87 PTZ00412 leucyl aminopeptidase 84.2 28 0.0006 33.7 12.8 117 38-162 212-354 (569)
88 COG0260 PepB Leucyl aminopepti 81.2 37 0.0008 32.4 12.4 121 38-163 167-309 (485)
89 PF06675 DUF1177: Protein of u 67.0 14 0.0003 31.8 5.2 86 92-187 30-130 (276)
90 PRK02256 putative aminopeptida 64.4 14 0.0003 35.0 5.3 40 121-164 252-293 (462)
91 PF04977 DivIC: Septum formati 53.0 41 0.00088 22.9 5.0 41 26-74 26-68 (80)
92 KOG3566 Glycosylphosphatidylin 48.8 1.9E+02 0.0042 28.2 9.9 89 62-172 92-192 (617)
93 COG4635 HemG Flavodoxin [Energ 45.3 18 0.00039 29.0 2.2 32 47-78 4-35 (175)
94 COG3149 PulM Type II secretory 40.6 2E+02 0.0043 23.4 7.7 50 29-81 76-125 (181)
95 COG2195 PepD Di- and tripeptid 38.0 43 0.00092 31.3 3.9 69 94-168 62-139 (414)
96 PF14133 DUF4300: Domain of un 36.3 2E+02 0.0043 24.9 7.4 57 49-107 137-194 (250)
97 PF04114 Gaa1: Gaa1-like, GPI 35.1 1.3E+02 0.0029 28.8 6.9 72 81-173 3-77 (504)
98 PRK00888 ftsB cell division pr 34.7 1.3E+02 0.0027 22.3 5.3 12 62-73 65-77 (105)
99 COG4882 Predicted aminopeptida 32.3 1.5E+02 0.0032 27.3 6.2 70 83-173 180-259 (486)
100 PF06103 DUF948: Bacterial pro 31.1 1.3E+02 0.0028 21.1 4.8 13 28-40 30-42 (90)
101 PRK08055 chorismate mutase; Pr 30.3 3.1E+02 0.0066 22.5 7.4 51 25-75 26-79 (181)
102 PRK02256 putative aminopeptida 30.3 2.9E+02 0.0063 26.2 8.2 50 57-106 41-106 (462)
103 PF01221 Dynein_light: Dynein 30.0 1.2E+02 0.0025 21.4 4.4 16 56-71 34-49 (89)
104 PRK02813 putative aminopeptida 29.9 69 0.0015 30.0 4.0 20 150-169 252-275 (428)
105 PRK04330 hypothetical protein; 29.0 1.8E+02 0.004 20.8 5.0 39 36-74 10-48 (88)
106 PF01316 Arg_repressor: Argini 27.8 88 0.0019 21.3 3.2 32 39-75 5-36 (70)
107 PRK05066 arginine repressor; P 25.7 1.3E+02 0.0028 24.0 4.3 36 36-76 6-42 (156)
108 PF09940 DUF2172: Domain of un 25.3 2.6E+02 0.0056 25.8 6.5 63 89-173 125-187 (386)
109 PF11803 UXS1_N: UDP-glucurona 24.4 1.6E+02 0.0034 20.3 3.8 22 25-46 51-72 (78)
110 PRK11546 zraP zinc resistance 21.1 2.2E+02 0.0049 22.3 4.7 19 29-47 52-70 (143)
111 PF12976 DUF3860: Domain of Un 21.1 2.6E+02 0.0056 19.5 4.4 30 21-50 2-31 (92)
112 PRK04280 arginine repressor; P 20.5 1.9E+02 0.0041 22.8 4.3 33 39-76 4-36 (148)
113 cd06893 PX_SNX19 The phosphoin 20.4 1.6E+02 0.0036 22.6 3.9 27 30-56 96-122 (132)
114 PRK08097 ligB NAD-dependent DN 20.4 3.2E+02 0.0069 26.7 6.5 62 1-69 5-69 (562)
No 1
>PLN02693 IAA-amino acid hydrolase
Probab=100.00 E-value=4.9e-48 Score=358.46 Aligned_cols=250 Identities=54% Similarity=0.870 Sum_probs=220.3
Q ss_pred HHHHHHHHHh--hHHHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeeccCCceEEEEEcCCCCceEEEeeccc
Q 023838 26 TNQVMISAQQ--DKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVVLRADMD 103 (276)
Q Consensus 26 ~~~i~~~i~~--~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~D 103 (276)
+.++.+...+ ..+++++++++|+++||+|++|.++++||.++|+++|++++....++|++++++++++|+|+|+||+|
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~r~~lh~~PE~s~~E~~ta~~i~~~L~~~G~~~~~~~~~~~via~~g~~~g~~i~l~~h~D 112 (437)
T PLN02693 33 QINLLELAKSPEVFDWMVRIRRKIHENPELGYEEFETSKLIRSELDLIGIKYRYPVAITGIIGYIGTGEPPFVALRADMD 112 (437)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHCCCeeEecCCCcEEEEEECCCCCCEEEEEeecC
Confidence 3334444444 55789999999999999999999999999999999999987544679999999644569999999999
Q ss_pred cCCCcCCCCCccccccCCeeecCCccHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCccccHHHHHHcCCCCCCcEEE
Q 023838 104 ALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGGAGAFHMIKEGALGDSEAIF 183 (276)
Q Consensus 104 tVp~~~~~~w~~~~~~~g~l~g~G~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~g~~~~~~~~~~~~~d~~i 183 (276)
|||+++..+|+++|..+|++||||||+++|++++|++.|++.+..++++|.|+|++|||++.|++.++++|.+++.|+++
T Consensus 113 aVp~~e~~~~~~~p~~~G~~hacGhkg~~A~~l~Aa~~L~~~~~~~~g~V~~if~pdEE~~~Ga~~~i~~g~~~~~~~ii 192 (437)
T PLN02693 113 ALPIQEAVEWEHKSKIPGKMHACGHDGHVAMLLGAAKILQEHRHHLQGTVVLIFQPAEEGLSGAKKMREEGALKNVEAIF 192 (437)
T ss_pred CCcCCCCCCCCCCCCCCCCEECCcchHHHHHHHHHHHHHHhCcccCCceEEEEEEEcccchhhHHHHHHCCCCCCCCEEE
Confidence 99998888899999889999999999999999999999998876788999999999999668999999999887788999
Q ss_pred EEeccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHhHhhccCCCCCceEEEEEEE
Q 023838 184 GMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQSLVCLSLLLS 263 (276)
Q Consensus 184 ~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~~~i~ 263 (276)
+.|.++..+.|.+..+.|..++|..+++|+++|+++|+|.|+.|+|||..+++++.+|+++..+..++..+.++|+|.|+
T Consensus 193 g~h~~p~~~~g~~~~~~g~~~~G~~~~~i~v~Gk~aHaa~P~~G~nAI~~aa~~i~~l~~~~~~~~~~~~~~ti~vg~i~ 272 (437)
T PLN02693 193 GIHLSPRTPFGKAASRAGSFMAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPLDSKVVTVSKVN 272 (437)
T ss_pred EEecCCCCCCeeEEeccCcccccceEEEEEEEcccccCCCCCCCcCHHHHHHHHHHHHHHHhcccCCCCCCcEEEEEEEE
Confidence 98887777778776666777789999999999999999999999999999999999999986655556678899999999
Q ss_pred eeCCccccCCCCC
Q 023838 264 IYSETCELLPLKA 276 (276)
Q Consensus 264 ~g~~~~nvIP~~a 276 (276)
|| .+.|+||++|
T Consensus 273 GG-~~~NvVPd~a 284 (437)
T PLN02693 273 GG-NAFNVIPDSI 284 (437)
T ss_pred cC-CCCceECCeE
Confidence 87 7999999986
No 2
>PLN02280 IAA-amino acid hydrolase
Probab=100.00 E-value=4.4e-46 Score=347.91 Aligned_cols=243 Identities=54% Similarity=0.865 Sum_probs=217.5
Q ss_pred HHhhHHHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeeccCCceEEEEEcCCCCceEEEeeccccCCCcCCCC
Q 023838 33 AQQDKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVVLRADMDALPLQELVE 112 (276)
Q Consensus 33 i~~~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~ 112 (276)
.++..+.++++++.++++|+++++|.++++||.++|+++|+++++...++|++++++++++|+|+|+||+||||+++..+
T Consensus 92 ~~~~~~~l~~l~r~lh~~PEls~~E~~t~~~i~~~L~~~G~~~~~~~~~~~vva~~g~~~~~~I~l~gh~DaVP~~e~~~ 171 (478)
T PLN02280 92 QPDTVAWLKSVRRKIHENPELAFEEYKTSELVRSELDRMGIMYRYPLAKTGIRAWIGTGGPPFVAVRADMDALPIQEAVE 171 (478)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCCeEEecCCCCEEEEEECCCCCCEEEEEEecCCCcccCCCC
Confidence 34555678889999999999999999999999999999999988766678999999544458999999999999988788
Q ss_pred CccccccCCeeecCCccHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCccccHHHHHHcCCCCCCcEEEEEeccCCCC
Q 023838 113 WEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGGAGAFHMIKEGALGDSEAIFGMHIDVGIP 192 (276)
Q Consensus 113 w~~~~~~~g~l~g~G~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~g~~~~~~~~~~~~~d~~i~~~~~~~~p 192 (276)
|+++++++|++||||+|+++|+++++++.|++.+.+++++|.|+|++|||.|.|+++|+++|.+++.|+++++|..+.+|
T Consensus 172 w~~~p~~~G~~h~cGhd~~~A~~l~a~~~L~~~~~~~~g~V~~if~pdEE~g~Ga~~li~~g~~~~~d~~~~~h~~~~~p 251 (478)
T PLN02280 172 WEHKSKVAGKMHACGHDAHVAMLLGAAKILKSREHLLKGTVVLLFQPAEEAGNGAKRMIGDGALDDVEAIFAVHVSHEHP 251 (478)
T ss_pred CCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHhccccCCceEEEEecccccccchHHHHHHCCCCcCCCEEEEEecCCCCC
Confidence 99999999999999999999999999999988777789999999999999988999999999888889999999877788
Q ss_pred cccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHhHhhccCCCCCceEEEEEEEeeCCccccC
Q 023838 193 TGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQSLVCLSLLLSIYSETCELL 272 (276)
Q Consensus 193 ~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~~~i~~g~~~~nvI 272 (276)
++.+....+...+|..+++|+++|+++|++.|+.|+||++.+++++..++++..+..++....++|++.|+|| .++|+|
T Consensus 252 ~g~ig~~~~~~~~G~~~~~I~v~Gk~aHas~P~~G~NAI~~aa~li~~l~~l~~r~~~~~~~~tvnvg~I~GG-~~~NvI 330 (478)
T PLN02280 252 TAVIGSRPGPLLAGCGFFRAVISGKKGRAGSPHHSVDLILAASAAVISLQGIVSREANPLDSQVVSVTTMDGG-NNLDMI 330 (478)
T ss_pred CceeEecccccccceeEEEEEEECcchhcCCcccCcCHHHHHHHHHHHHHHHHhcccCCCCCcEEEEEEEEcc-CCCCEe
Confidence 8776666677778999999999999999999999999999999999999988655545556789999999987 799999
Q ss_pred CCCC
Q 023838 273 PLKA 276 (276)
Q Consensus 273 P~~a 276 (276)
||+|
T Consensus 331 Pd~~ 334 (478)
T PLN02280 331 PDTV 334 (478)
T ss_pred CCEE
Confidence 9975
No 3
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=100.00 E-value=1.1e-43 Score=321.26 Aligned_cols=246 Identities=45% Similarity=0.717 Sum_probs=227.3
Q ss_pred HHHHHHhhHHHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeeccC-CceEEEEEcCC-CCceEEEeeccccCC
Q 023838 29 VMISAQQDKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVA-KTGIVAQIGSG-SRPVVVLRADMDALP 106 (276)
Q Consensus 29 i~~~i~~~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~-~~nvia~~~~~-~~~~i~l~~H~DtVp 106 (276)
+.+.+ ..++++++++|+|+++|+++++|.++++||.++|+++|+++....+ ++++++.++++ ++|+|+|.+.||.+|
T Consensus 4 ~~~~~-~~~~~l~~~rr~lH~~PEL~f~E~~Ta~~i~~~L~~~g~~~~~~~~~~TGvva~~~~g~~g~tIalRAD~DALP 82 (392)
T COG1473 4 ILDEI-ELKDELIEWRRDLHEHPELGFEEYRTAAYIAEKLEELGFEVVEVGGGKTGVVATLKGGKPGPTIALRADMDALP 82 (392)
T ss_pred HHHHH-hhhHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHcCCeeEeccCCceEEEEEEcCCCCCCEEEEEeecccCc
Confidence 44445 6778999999999999999999999999999999999999544333 68999999865 568999999999999
Q ss_pred CcCCCCCccccccCCeeecCCccHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCccccHHHHHHcCCCCC-CcEEEEE
Q 023838 107 LQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGGAGAFHMIKEGALGD-SEAIFGM 185 (276)
Q Consensus 107 ~~~~~~w~~~~~~~g~l~g~G~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~g~~~~~~~~~~~~-~d~~i~~ 185 (276)
..+..+++|.+..+|++|+|||+++.+++|++++.|++...+++++|+|+|+|.||++.|++.|+++|.+++ +|+++.+
T Consensus 83 i~E~t~~~~~S~~~G~mHACGHD~Hta~lLgaA~~L~~~~~~~~Gtv~~ifQPAEE~~~Ga~~mi~~G~~~~~vD~v~g~ 162 (392)
T COG1473 83 IQEETGLPFASKNPGVMHACGHDGHTAILLGAALALAEHKDNLPGTVRLIFQPAEEGGGGAKAMIEDGVFDDFVDAVFGL 162 (392)
T ss_pred cccccCCCcccCCCCCcccCCchHHHHHHHHHHHHHHhhhhhCCcEEEEEecccccccccHHHHHhcCCccccccEEEEe
Confidence 989899999999999999999999999999999999998778999999999999999889999999999999 9999999
Q ss_pred eccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHhHhhccCCCCCceEEEEEEEee
Q 023838 186 HIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQSLVCLSLLLSIY 265 (276)
Q Consensus 186 ~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~~~i~~g 265 (276)
|+.|+.|.|.+..+.|....+...++|+++|+++|++.|+.++||+..++.++..|+.+..+..+|..+.+++++.+++|
T Consensus 163 H~~p~~~~g~v~~~~G~~~aa~d~~~i~~~GkggH~a~Ph~~~d~i~aa~~~v~~lq~ivsr~~~p~~~~vv~vg~~~aG 242 (392)
T COG1473 163 HPGPGLPVGTVALRPGALMAAADEFEITFKGKGGHAAAPHLGIDALVAAAQLVTALQTIVSRNVDPLDSAVVTVGKIEAG 242 (392)
T ss_pred cCCCCCCCceEEeecccceeecceEEEEEEeCCcccCCcccccCHHHHHHHHHHHHHHHHhcccCCccCeEEEEEEecCC
Confidence 99887788999889888788999999999999999999999999999999999999999988888888899999999998
Q ss_pred CCccccCCCCC
Q 023838 266 SETCELLPLKA 276 (276)
Q Consensus 266 ~~~~nvIP~~a 276 (276)
.+.|||||.|
T Consensus 243 -~a~NVIpd~A 252 (392)
T COG1473 243 -TAANVIPDSA 252 (392)
T ss_pred -CcCCcCCCee
Confidence 7899999986
No 4
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=100.00 E-value=5.5e-43 Score=318.53 Aligned_cols=235 Identities=48% Similarity=0.764 Sum_probs=203.3
Q ss_pred HHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeee-ccCCceEEEEEcCC-CCceEEEeeccccCCCcCCCCCccccc
Q 023838 41 VSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAY-PVAKTGIVAQIGSG-SRPVVVLRADMDALPLQELVEWEHKSK 118 (276)
Q Consensus 41 ~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~-~~~~~nvia~~~~~-~~~~i~l~~H~DtVp~~~~~~w~~~~~ 118 (276)
.+++++|++|||+|++|.++++||.++|+++|+++++ .....|++++++++ ++|+|+|+||+||||+++...+||.+.
T Consensus 2 ~~~~~~L~~ips~s~~E~~~a~~l~~~l~~~g~~~~~~~~~~~~vva~~~~~~~~~~i~l~gH~DtVp~~~~~~~pf~~~ 81 (363)
T TIGR01891 2 TDIRRHLHEHPELSFEEFKTSSLIAEALESLGIEVRRGVGGATGVVATIGGGKPGPVVALRADMDALPIQEQTDLPYKST 81 (363)
T ss_pred hHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCceEecCCCCcEEEEEEeCCCCCCEEEEEeccCCCCcccccCCCcccC
Confidence 5789999999999999999999999999999999876 34568999999764 468999999999999876555677766
Q ss_pred cCCeeecCCccHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCccccHHHHHHcCCCCCCcEEEEEeccCCCCcccEEe
Q 023838 119 IDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGGAGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIAS 198 (276)
Q Consensus 119 ~~g~l~g~G~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~g~~~~~~~~~~~~~d~~i~~~~~~~~p~~~~~~ 198 (276)
.||++||||++++++++++++..|++.+..++++|.|+|++|||.+.|++++++++.+++.|+++++++.+..+.+.+..
T Consensus 82 ~~g~l~g~G~~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~G~~~~~~~~~~~~~d~~i~~e~~~~~~~~~~~~ 161 (363)
T TIGR01891 82 NPGVMHACGHDLHTAILLGTAKLLKKLADLLEGTVRLIFQPAEEGGGGATKMIEDGVLDDVDAILGLHPDPSIPAGTVGL 161 (363)
T ss_pred CCCceecCcCHHHHHHHHHHHHHHHhchhhCCceEEEEEeecCcCcchHHHHHHCCCCCCcCEEEEECCCCCCCCeEEEE
Confidence 78999999999999999999999988766678999999999999988999999988777789999988766666666555
Q ss_pred eccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHhHhhccCCCCCceEEEEEEEeeCCccccCCCCC
Q 023838 199 ISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQSLVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 199 ~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~~~i~~g~~~~nvIP~~a 276 (276)
..+..++|..+++++++|+++|++.|+.|+||+..|++++.+++++..+..++....++|++.|+|| .+.|+||++|
T Consensus 162 ~~~~~~~g~~~~~i~~~G~~~Has~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~i~~i~gG-~~~nvvP~~~ 238 (363)
T TIGR01891 162 RPGTIMAAADKFEVTIHGKGAHAARPHLGRDALDAAAQLVVALQQIVSRNVDPSRPAVVTVGIIEAG-GAPNVIPDKA 238 (363)
T ss_pred CCCcceeecceEEEEEEeecccccCcccccCHHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEEcC-CCCcEECCee
Confidence 5666778999999999999999999999999999999999999987543333344678999999987 6999999975
No 5
>PRK06915 acetylornithine deacetylase; Validated
Probab=100.00 E-value=1.2e-42 Score=322.21 Aligned_cols=242 Identities=20% Similarity=0.246 Sum_probs=205.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeec--------------------cCCce
Q 023838 24 ILTNQVMISAQQDKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYP--------------------VAKTG 83 (276)
Q Consensus 24 ~~~~~i~~~i~~~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~--------------------~~~~n 83 (276)
.+++++.++++++++++++++++|++|||+|++|.++++||+++|+++|+++++. +.++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~lv~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 82 (422)
T PRK06915 3 QLKKQICDYIESHEEEAVKLLKRLIQEKSVSGDESGAQAIVIEKLRELGLDLDIWEPSFKKLKDHPYFVSPRTSFSDSPN 82 (422)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhcCCeeEEeecchhhhhcccccCCcccccCCCce
Confidence 4689999999999999999999999999999999999999999999999987531 24689
Q ss_pred EEEEEcCC-CCceEEEeeccccCCCcCCCCCc---ccc-ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEE
Q 023838 84 IVAQIGSG-SRPVVVLRADMDALPLQELVEWE---HKS-KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRI 155 (276)
Q Consensus 84 via~~~~~-~~~~i~l~~H~DtVp~~~~~~w~---~~~-~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~ 155 (276)
+++++++. ++|+|+|+||+||||+++...|+ |.+ +++|++||||+ ||++++++.|++.|++.+.+++++|.|
T Consensus 83 lia~~~g~~~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~v~~ 162 (422)
T PRK06915 83 IVATLKGSGGGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGIELKGDVIF 162 (422)
T ss_pred EEEEEcCCCCCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 99999653 46899999999999998888895 444 46999999997 789999999999999887778899999
Q ss_pred EEecCCCcc-ccHHHHHHcCCCCCCcEEEEEeccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHH
Q 023838 156 LFQPAEEGG-AGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTA 234 (276)
Q Consensus 156 ~~~~dEE~g-~g~~~~~~~~~~~~~d~~i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~ 234 (276)
+|++|||.| .|+..++..+. +.|++++ ++|++.. ...+++|..+++|+++|+++|+|.|+.|+||+..+
T Consensus 163 ~~~~dEE~g~~G~~~~~~~~~--~~d~~i~-----~ep~~~~---i~~~~~G~~~~~i~v~G~~~H~s~p~~g~nAi~~~ 232 (422)
T PRK06915 163 QSVIEEESGGAGTLAAILRGY--KADGAII-----PEPTNMK---FFPKQQGSMWFRLHVKGKAAHGGTRYEGVSAIEKS 232 (422)
T ss_pred EEecccccCCcchHHHHhcCc--CCCEEEE-----CCCCCcc---ceeecccEEEEEEEEEeeccccCCCCcCcCHHHHH
Confidence 999999976 68888888764 5788886 4566532 23568899999999999999999999999999999
Q ss_pred HHHHHHHHHhHhhc----cCCC-----CCceEEEEEEEeeCCccccCCCCC
Q 023838 235 SSVILALQQLISRE----ADPL-----QSLVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 235 ~~~i~~l~~~~~~~----~~~~-----~~~~i~~~~i~~g~~~~nvIP~~a 276 (276)
++++..|+++.... ..++ .+.++|++.|+|| ...|+||+.|
T Consensus 233 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~t~~v~~i~gG-~~~nvvP~~a 282 (422)
T PRK06915 233 MFVIDHLRKLEEKRNDRITDPLYKGIPIPIPINIGKIEGG-SWPSSVPDSV 282 (422)
T ss_pred HHHHHHHHHHHHHhccccCCCcccCCCCCceEeEEEeeCC-CCCCccCcEE
Confidence 99999999876431 1121 2468999999987 7999999975
No 6
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=3.6e-41 Score=307.96 Aligned_cols=229 Identities=21% Similarity=0.284 Sum_probs=195.6
Q ss_pred HHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeec---cCCceEEEEEcCCCCceEEEeeccccCCCcCCCCCc
Q 023838 38 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYP---VAKTGIVAQIGSGSRPVVVLRADMDALPLQELVEWE 114 (276)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~---~~~~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~w~ 114 (276)
+++++++++|+++||+|++|.++++||.++|+++|++++.. ++++|++++++++ .|+|+|++|+||||+++...|.
T Consensus 2 ~~~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~g~~-~~~il~~~H~DtVp~~~~~~w~ 80 (377)
T PRK08588 2 EEKIQILADIVKINSVNDNEIEVANYLQDLFAKHGIESKIVKVNDGRANLVAEIGSG-SPVLALSGHMDVVAAGDVDKWT 80 (377)
T ss_pred hHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCCceEEEecCCCCceEEEEeCCC-CceEEEEeeecccCCCCcccCc
Confidence 57889999999999999999999999999999999998653 3568999999544 4899999999999998777896
Q ss_pred ccc----ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHHHHcCCCCCCcEEEEEe
Q 023838 115 HKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMH 186 (276)
Q Consensus 115 ~~~----~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~~~~~~~~~~d~~i~~~ 186 (276)
++| .+||++||||+ |+++++++.|++.|++.+..++++|.|+|++|||.| .|++++++++.++++|++++.
T Consensus 81 ~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~l~~~~dEE~g~~G~~~~~~~~~~~~~d~~i~~- 159 (377)
T PRK08588 81 YDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQGQLLNGTIRLLATAGEEVGELGAKQLTEKGYADDLDALIIG- 159 (377)
T ss_pred CCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcCCCCCCcEEEEEEcccccCchhHHHHHhcCccCCCCEEEEe-
Confidence 543 56899999997 899999999999999888778999999999999987 799999999877778888763
Q ss_pred ccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHhHhhcc---CCCCCceEEEEEEE
Q 023838 187 IDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREA---DPLQSLVCLSLLLS 263 (276)
Q Consensus 187 ~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~---~~~~~~~i~~~~i~ 263 (276)
+|++.. ...+++|..+++|+++|+++|+|.|+.|.|||..+++++..++++..+.. +.++.++++++.|+
T Consensus 160 ----ep~~~~---i~~~~~G~~~~~i~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~t~~v~~i~ 232 (377)
T PRK08588 160 ----EPSGHG---IVYAHKGSMDYKVTSTGKAAHSSMPELGVNAIDPLLEFYNEQKEYFDSIKKHNPYLGGLTHVVTIIN 232 (377)
T ss_pred ----cCCCce---eEEEEEEEEEEEEEEEeechhccCCccccCHHHHHHHHHHHHHHHhhhhcccCccCCCCceeeeEEe
Confidence 344321 12357899999999999999999999999999999999999988654321 22457899999999
Q ss_pred eeCCccccCCCCC
Q 023838 264 IYSETCELLPLKA 276 (276)
Q Consensus 264 ~g~~~~nvIP~~a 276 (276)
|| ...|+||++|
T Consensus 233 gG-~~~nvip~~~ 244 (377)
T PRK08588 233 GG-EQVNSVPDEA 244 (377)
T ss_pred CC-CcCCcCCCeE
Confidence 87 7999999975
No 7
>PRK06837 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=7.4e-41 Score=310.64 Aligned_cols=246 Identities=17% Similarity=0.179 Sum_probs=206.3
Q ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeec--------------------c
Q 023838 20 AVDEILTNQVMISAQQDKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYP--------------------V 79 (276)
Q Consensus 20 ~~~~~~~~~i~~~i~~~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~--------------------~ 79 (276)
|.+..+.+++.+++++.++++++++++|++|||+|++|.++++||+++|+++|+++++. +
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~l~~li~ipS~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (427)
T PRK06837 2 MLTPDLTQRILAAVDAGFDAQVAFTQDLVRFPSTRGAEAPCQDFLARAFRERGYEVDRWSIDPDDLKSHPGAGPVEIDYS 81 (427)
T ss_pred CCchHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHCCCceEEecCCHHHhhhcccccccccccC
Confidence 45677888999999999999999999999999999999999999999999999987541 2
Q ss_pred CCceEEEEEcCC--CCceEEEeeccccCCCcCCCCCccc---c-ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCC
Q 023838 80 AKTGIVAQIGSG--SRPVVVLRADMDALPLQELVEWEHK---S-KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLK 150 (276)
Q Consensus 80 ~~~nvia~~~~~--~~~~i~l~~H~DtVp~~~~~~w~~~---~-~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~ 150 (276)
+++|+++++++. .+|+|+|+||+||||+++...|..+ + .++|++||||+ ||++++++.|++.|++.+..++
T Consensus 82 ~~~nl~a~~~g~~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~~~~ 161 (427)
T PRK06837 82 GAPNVVGTYRPAGKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAGLAPA 161 (427)
T ss_pred CCceEEEEecCCCCCCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCC
Confidence 468999999653 3689999999999999876778654 3 46899999997 8999999999999998887789
Q ss_pred ceEEEEEecCCCcc-ccHHHHHHcCCCCCCcEEEEEeccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCc
Q 023838 151 GTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTID 229 (276)
Q Consensus 151 ~~v~~~~~~dEE~g-~g~~~~~~~~~~~~~d~~i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~n 229 (276)
++|.|+|++|||.+ .|+..++..++ ..|++|+. +|++.. ...+++|..+++++++|+++|+|.|+.|+|
T Consensus 162 ~~i~~~~~~dEE~~g~g~~~~~~~~~--~~d~~iv~-----ep~~~~---i~~~~~G~~~~~i~v~G~~~Hs~~p~~g~n 231 (427)
T PRK06837 162 ARVHFQSVIEEESTGNGALSTLQRGY--RADACLIP-----EPTGEK---LVRAQVGVIWFRLRVRGAPVHVREAGTGAN 231 (427)
T ss_pred CcEEEEEEeccccCCHhHHHHHhcCc--CCCEEEEc-----CCCCCc---cccccceeEEEEEEEEeeccccCCcccCcC
Confidence 99999999999965 78888887764 47888873 444432 234578999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhcc-----CC-----CCCceEEEEEEEeeCCccccCCCCC
Q 023838 230 PILTASSVILALQQLISREA-----DP-----LQSLVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 230 Ai~~~~~~i~~l~~~~~~~~-----~~-----~~~~~i~~~~i~~g~~~~nvIP~~a 276 (276)
|+..+++++..|+++..... .+ ..+.++|++.|+|| ...|+||++|
T Consensus 232 Ai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~t~ni~~i~gG-~~~nvVP~~~ 287 (427)
T PRK06837 232 AIDAAYHLIQALRELEAEWNARKASDPHFEDVPHPINFNVGIIKGG-DWASSVPAWC 287 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCcccCCCCceeEeeeeEeCC-CCCCccCCEE
Confidence 99999999999988754211 11 13568999999987 7999999875
No 8
>PRK13004 peptidase; Reviewed
Probab=100.00 E-value=5.5e-40 Score=302.38 Aligned_cols=241 Identities=17% Similarity=0.173 Sum_probs=202.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeeccCCceEEEEEcCCCCceEEEeeccccC
Q 023838 26 TNQVMISAQQDKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVVLRADMDAL 105 (276)
Q Consensus 26 ~~~i~~~i~~~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~DtV 105 (276)
-+.+.++++++++++++++++|++|||+|++|.+++++|.++|+++|+++...+.++|+++.+++++ |+|+|++|+|||
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~lv~ips~s~~e~~~a~~l~~~l~~~G~~~~~~~~~~n~~a~~~~~~-~~i~~~~H~DtV 81 (399)
T PRK13004 3 FKLILMLAEKYKADMTRFLRDLIRIPSESGDEKRVVKRIKEEMEKVGFDKVEIDPMGNVLGYIGHGK-KLIAFDAHIDTV 81 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCcEEEEcCCCeEEEEECCCC-cEEEEEeccCcc
Confidence 3678889999999999999999999999999999999999999999998655455689999986554 899999999999
Q ss_pred CCcCCCCCcccc----ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc--ccHHHHHHcCCC
Q 023838 106 PLQELVEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG--AGAFHMIKEGAL 176 (276)
Q Consensus 106 p~~~~~~w~~~~----~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g--~g~~~~~~~~~~ 176 (276)
|+++..+|+++| ..||++||||+ |++++++++|++.|++.+..++++|.++|++|||.+ .|+++++++..+
T Consensus 82 p~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~g~~~~~~~~~~~~ 161 (399)
T PRK13004 82 GIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDLGLDDEYTLYVTGTVQEEDCDGLCWRYIIEEDKI 161 (399)
T ss_pred CCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhcCCCCCCeEEEEEEcccccCcchhHHHHHHhcCC
Confidence 998777897654 45899999988 899999999999999888778999999999999963 567888876544
Q ss_pred CCCcEEEEEeccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHhHhh--ccCCCCC
Q 023838 177 GDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISR--EADPLQS 254 (276)
Q Consensus 177 ~~~d~~i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~--~~~~~~~ 254 (276)
++|++++.+ |++. ....+++|..+++|+++|+++|++.|+.|+||+..+++++..|+++... .....+.
T Consensus 162 -~~d~~i~~e-----~~~~---~i~~~~~G~~~~~v~v~G~~~Ha~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~ 232 (399)
T PRK13004 162 -KPDFVVITE-----PTDL---NIYRGQRGRMEIRVETKGVSCHGSAPERGDNAIYKMAPILNELEELNPNLKEDPFLGK 232 (399)
T ss_pred -CCCEEEEcc-----CCCC---ceEEecceEEEEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHhhccccccCCcCCC
Confidence 478888743 3332 1123577999999999999999999999999999999999999887543 1112345
Q ss_pred ceEEEEEEEeeCCccccCCCCC
Q 023838 255 LVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 255 ~~i~~~~i~~g~~~~nvIP~~a 276 (276)
.+++++.|.+|+.+.|+||++|
T Consensus 233 ~~~~v~~i~~g~~~~nvvP~~~ 254 (399)
T PRK13004 233 GTLTVSDIFSTSPSRCAVPDSC 254 (399)
T ss_pred ceEEEeeeecCCCCCCccCCEE
Confidence 7899999997756999999975
No 9
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=5.9e-40 Score=304.61 Aligned_cols=239 Identities=15% Similarity=0.139 Sum_probs=194.2
Q ss_pred HHHHHHHhhHHHHHHHHHHhhhCCCCC--C-cHHHHHHHHHHHHHhcCCCeeecc-----------CCceEEEEEcCC-C
Q 023838 28 QVMISAQQDKDWLVSVRRQIHENPELL--F-EEHNTSALIRRELDKLGIPYAYPV-----------AKTGIVAQIGSG-S 92 (276)
Q Consensus 28 ~i~~~i~~~~~~~~~~~~~l~~ips~s--~-~e~~~~~~l~~~l~~~G~~~~~~~-----------~~~nvia~~~~~-~ 92 (276)
++.++++++++++++++++|++|||++ + +|.++++||.++|+++|+++++.. .++|++++++++ +
T Consensus 4 ~~~~~~~~~~~~~~~~l~~Lv~i~S~~~~g~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~nlia~~~g~~~ 83 (427)
T PRK13013 4 RLFAAIEARRDDLVALTQDLIRIPTLNPPGRAYREICEFLAARLAPRGFEVELIRAEGAPGDSETYPRWNLVARRQGARD 83 (427)
T ss_pred HHHHHHHHhHHHHHHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHHCCCceEEEecCCCCcccccCCcceEEEEecCCCC
Confidence 477778888899999999999999986 3 568999999999999999987532 146999999653 4
Q ss_pred CceEEEeeccccCCCcCCCCCc---ccc-ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-
Q 023838 93 RPVVVLRADMDALPLQELVEWE---HKS-KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG- 164 (276)
Q Consensus 93 ~~~i~l~~H~DtVp~~~~~~w~---~~~-~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g- 164 (276)
+|+|+|+||+||||+++ .|. |.+ ++||++||||+ ||+++++++|++.|++.+.+++++|.|+|++|||.|
T Consensus 84 ~~~i~l~gH~DvVp~~~--~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~ 161 (427)
T PRK13013 84 GDCVHFNSHHDVVEVGH--GWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFAGSIEISGTADEESGG 161 (427)
T ss_pred CCEEEEEeccccCCCCC--CCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhCCCCCccEEEEEEeccccCC
Confidence 58999999999999863 474 554 46899999987 899999999999999887778899999999999986
Q ss_pred -ccHHHHHHcCCCC--CCcEEEEEeccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHH
Q 023838 165 -AGAFHMIKEGALG--DSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILAL 241 (276)
Q Consensus 165 -~g~~~~~~~~~~~--~~d~~i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l 241 (276)
.|..++++++.++ ++|++++. +|++... ...+++|..+++|+++|+++|++.|+.|+||+..+++++..|
T Consensus 162 ~~g~~~l~~~~~~~~~~~d~~i~~-----ep~~~~~--i~~~~~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~l~~l 234 (427)
T PRK13013 162 FGGVAYLAEQGRFSPDRVQHVIIP-----EPLNKDR--ICLGHRGVWWAEVETRGRIAHGSMPFLGDSAIRHMGAVLAEI 234 (427)
T ss_pred hhHHHHHHhcCCccccCCCEEEEe-----cCCCCCc--eEEeeeeEEEEEEEEEccccccCCCCcCcCHHHHHHHHHHHH
Confidence 4778888887665 56888874 3444211 223578999999999999999999999999999999999999
Q ss_pred HHhHhhcc------CC-----CCCceEEEEEEEeeCCcc----------ccCCCCC
Q 023838 242 QQLISREA------DP-----LQSLVCLSLLLSIYSETC----------ELLPLKA 276 (276)
Q Consensus 242 ~~~~~~~~------~~-----~~~~~i~~~~i~~g~~~~----------nvIP~~a 276 (276)
+++..+.. .+ ....++|++.|+|| ... |+||++|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~gG-~~~~~~~~~~~~~n~IPd~a 289 (427)
T PRK13013 235 EERLFPLLATRRTAMPVVPEGARQSTLNINSIHGG-EPEQDPDYTGLPAPCVADRC 289 (427)
T ss_pred HHHhhhhhhcccccCCCCCcccCCCceeeeEEeCC-CccccccccccccccCCceE
Confidence 87542110 01 13579999999987 455 9999975
No 10
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=100.00 E-value=1.4e-39 Score=299.19 Aligned_cols=239 Identities=17% Similarity=0.166 Sum_probs=198.7
Q ss_pred HHHHHHHhhHHHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeeccCCceEEEEEcCCCCceEEEeeccccCCC
Q 023838 28 QVMISAQQDKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVVLRADMDALPL 107 (276)
Q Consensus 28 ~i~~~i~~~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~DtVp~ 107 (276)
++.++++++++++++++++|++|||++++|.++++||.++|+++|+++...+...|+++.++.+ .|+|+|++|+||||+
T Consensus 3 ~~~~~~~~~~~~~~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~v~~~~g~~-~~~l~l~~H~DtVp~ 81 (395)
T TIGR03526 3 QIKSEAEKYRGDMIRFLRDLVAIPSESGDEGRVALRIKQEMEKLGFDKVEIDPMGNVLGYIGHG-PKLIAMDAHIDTVGI 81 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCceEEEcCCCcEEEEeCCC-CCEEEEEeeccccCC
Confidence 5788899999999999999999999999999999999999999999854334457999998533 489999999999999
Q ss_pred cCCCCCcccc----ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc--ccHHHHHHcCCCCC
Q 023838 108 QELVEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG--AGAFHMIKEGALGD 178 (276)
Q Consensus 108 ~~~~~w~~~~----~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g--~g~~~~~~~~~~~~ 178 (276)
++...|.++| ..||++||||+ ||++++++.|++.|++.+..+++++.|++++|||.+ .|+..+++++.+ +
T Consensus 82 ~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~g~~~~~~~~~~~~-~ 160 (395)
T TIGR03526 82 GDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEEDKI-K 160 (395)
T ss_pred CCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHHcCCCCCceEEEEEecccccCCcHhHHHHHhccCC-C
Confidence 8888897665 46899999994 999999999999999887667889999999999943 566777776544 4
Q ss_pred CcEEEEEeccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHhHhhc-cCC-CCCce
Q 023838 179 SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISRE-ADP-LQSLV 256 (276)
Q Consensus 179 ~d~~i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~-~~~-~~~~~ 256 (276)
.|++++ ++|++. ....+++|..+++|+++|+++|++.|+.|+||+..+++++.+|+++.... .++ ....+
T Consensus 161 ~d~~i~-----~ep~~~---~i~~g~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~ 232 (395)
T TIGR03526 161 PEFVVI-----TEPTDM---NIYRGQRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNANLVEDPFLGKGT 232 (395)
T ss_pred CCEEEe-----cCCCCc---eEEEEcceEEEEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHhhhhhcCCcccCccc
Confidence 788887 345442 12335789999999999999999999999999999999999998875422 223 34579
Q ss_pred EEEEEEEeeCCccccCCCCC
Q 023838 257 CLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 257 i~~~~i~~g~~~~nvIP~~a 276 (276)
++++.|++|+.+.|+||++|
T Consensus 233 ~~v~~i~~g~~~~nviP~~~ 252 (395)
T TIGR03526 233 LTVSEIFFSSPSRCAVADGC 252 (395)
T ss_pred eeeeeeecCCCCCCccCCeE
Confidence 99999998755899999975
No 11
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=100.00 E-value=1.7e-39 Score=298.80 Aligned_cols=240 Identities=17% Similarity=0.162 Sum_probs=197.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeeccCCceEEEEEcCCCCceEEEeeccccCC
Q 023838 27 NQVMISAQQDKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVVLRADMDALP 106 (276)
Q Consensus 27 ~~i~~~i~~~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~DtVp 106 (276)
+++.++++++++++++++++|++|||++++|.++++||.++|+++|+++...+...|+++.++. ++|+|+|++|+||||
T Consensus 2 ~~~~~~i~~~~~~~~~~~~~lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~n~~~~~g~-~~~~l~l~~H~DtVp 80 (395)
T TIGR03320 2 NQIKSEAKKYRGDMIRFLRDLVAIPSESGDEKRVAERIKEEMEKLGFDKVEIDPMGNVLGYIGH-GPKLIAMDAHIDTVG 80 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHhCCcEEEECCCCCEEEEeCC-CCcEEEEEecccccC
Confidence 3578889999999999999999999999999999999999999999985333446799999853 348999999999999
Q ss_pred CcCCCCCcccc----ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCccc--cHHHHHHcCCCC
Q 023838 107 LQELVEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGGA--GAFHMIKEGALG 177 (276)
Q Consensus 107 ~~~~~~w~~~~----~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~--g~~~~~~~~~~~ 177 (276)
+++..+|.++| +.||++||||+ |+++++++.|++.|++.+..+++++.|.+++|||.+. +.+.++++..+
T Consensus 81 ~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g~~~~~~i~~~~~~dEE~~~g~~~~~~~~~~~~- 159 (395)
T TIGR03320 81 IGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEEDGI- 159 (395)
T ss_pred CCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHHcCCCCCceEEEEecccccccCchHHHHHHHhcCC-
Confidence 98888897664 46899999996 9999999999999998876678899999999999753 34566665433
Q ss_pred CCcEEEEEeccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHhHhhc-cCC-CCCc
Q 023838 178 DSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISRE-ADP-LQSL 255 (276)
Q Consensus 178 ~~d~~i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~-~~~-~~~~ 255 (276)
.+|++++ ++|+.. ....+++|..+++|+++|+++|+|.|+.|.||+..+++++..|+++.... .++ .+..
T Consensus 160 ~~d~~iv-----~ep~~~---~i~~g~~G~~~~~v~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~ 231 (395)
T TIGR03320 160 KPEFVVI-----TEPTDM---NIYRGQRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNANLVEDPFLGKG 231 (395)
T ss_pred CCCEEEE-----cCCCcc---ceEEecceEEEEEEEEeeeccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCcccCcC
Confidence 4788887 345432 12235789999999999999999999999999999999999999875432 223 3457
Q ss_pred eEEEEEEEeeCCccccCCCCC
Q 023838 256 VCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 256 ~i~~~~i~~g~~~~nvIP~~a 276 (276)
+++++.|++|..+.|+||++|
T Consensus 232 t~~v~~i~~g~~~~NviP~~~ 252 (395)
T TIGR03320 232 TLTVSEIFFSSPSRCAVADGC 252 (395)
T ss_pred ceeeeeeecCCCCcCccCCEE
Confidence 999999998755899999975
No 12
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=100.00 E-value=3.5e-39 Score=297.96 Aligned_cols=242 Identities=19% Similarity=0.245 Sum_probs=200.3
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHhhhCCCCCCcH---HHHHHHHHHHHHhcCCCeeecc----CCceEEEEEcCCCC
Q 023838 21 VDEILTNQVMISAQQDKDWLVSVRRQIHENPELLFEE---HNTSALIRRELDKLGIPYAYPV----AKTGIVAQIGSGSR 93 (276)
Q Consensus 21 ~~~~~~~~i~~~i~~~~~~~~~~~~~l~~ips~s~~e---~~~~~~l~~~l~~~G~~~~~~~----~~~nvia~~~~~~~ 93 (276)
+.....+++.++++++++++++++++|++|||++++| .++++||+++|+++|+++++.+ .++|+++++++.+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~lia~~~g~~~ 99 (410)
T PRK06133 20 AAAAPDAELLAAAQQEQPAYLDTLKELVSIESGSGDAEGLKQVAALLAERLKALGAKVERAPTPPSAGDMVVATFKGTGK 99 (410)
T ss_pred cccchHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEEEECCCCC
Confidence 3344566799999999999999999999999999765 4899999999999999987642 35799999965445
Q ss_pred ceEEEeeccccCCCcCCCCCcccc--ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccH
Q 023838 94 PVVVLRADMDALPLQELVEWEHKS--KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGA 167 (276)
Q Consensus 94 ~~i~l~~H~DtVp~~~~~~w~~~~--~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~ 167 (276)
|+|+|+||+||||++. .|..+| .++|++||||+ |+++++++++++.|++.+..++++|.|+|++|||.| .|+
T Consensus 100 ~~ill~~H~D~Vp~~~--~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~G~ 177 (410)
T PRK06133 100 RRIMLIAHMDTVYLPG--MLAKQPFRIDGDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTLTVLFNPDEETGSPGS 177 (410)
T ss_pred ceEEEEeecCccCCCC--ccCCCCEEEECCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCcccCCccH
Confidence 8999999999999853 475444 56899999996 899999999999999887778899999999999987 699
Q ss_pred HHHHHcCCCCCCcEEEEEeccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcC-CCCCCCcHHHHHHHHHHHHHHhHh
Q 023838 168 FHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAA-MPHSTIDPILTASSVILALQQLIS 246 (276)
Q Consensus 168 ~~~~~~~~~~~~d~~i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~-~p~~g~nAi~~~~~~i~~l~~~~~ 246 (276)
++++++.. .+.|++|+.++ +.+.+.+. .+++|..+++++++|+++||| .|+.|+||+..+++++..|+++..
T Consensus 178 ~~~~~~~~-~~~d~~i~~ep--~~~~~~v~----~~~~G~~~~~v~v~G~~~Hsg~~p~~g~nAi~~~~~~i~~l~~~~~ 250 (410)
T PRK06133 178 RELIAELA-AQHDVVFSCEP--GRAKDALT----LATSGIATALLEVKGKASHAGAAPELGRNALYELAHQLLQLRDLGD 250 (410)
T ss_pred HHHHHHHh-ccCCEEEEeCC--CCCCCCEE----EeccceEEEEEEEEeeccccCCCcccCcCHHHHHHHHHHHHHhccC
Confidence 99997633 35799998653 33323332 246799999999999999986 899999999999999999987632
Q ss_pred hccCCCCCceEEEEEEEeeCCccccCCCCC
Q 023838 247 READPLQSLVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 247 ~~~~~~~~~~i~~~~i~~g~~~~nvIP~~a 276 (276)
+....+++++.|+|| .+.|+||++|
T Consensus 251 ----~~~~~t~~~~~i~gG-~~~nvIP~~~ 275 (410)
T PRK06133 251 ----PAKGTTLNWTVAKAG-TNRNVIPASA 275 (410)
T ss_pred ----CCCCeEEEeeEEECC-CCCceeCCcc
Confidence 234578999999987 7999999986
No 13
>PRK07338 hypothetical protein; Provisional
Probab=100.00 E-value=3.3e-38 Score=290.76 Aligned_cols=237 Identities=16% Similarity=0.140 Sum_probs=195.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhCCCCCCcH---HHHHHHHHHHHHhcCCCeeecc-----------------CCceE
Q 023838 25 LTNQVMISAQQDKDWLVSVRRQIHENPELLFEE---HNTSALIRRELDKLGIPYAYPV-----------------AKTGI 84 (276)
Q Consensus 25 ~~~~i~~~i~~~~~~~~~~~~~l~~ips~s~~e---~~~~~~l~~~l~~~G~~~~~~~-----------------~~~nv 84 (276)
++.++.++++++.++++++|.+|+++||+|+++ .++++||.++|+++|++++..+ ..+|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~nl 83 (402)
T PRK07338 4 EERAVLDLIDDRQAPMLEQLIAWAAINSGSRNLDGLARMAELLADAFAALPGEIELIPLPPVEVIDADGRTLEQAHGPAL 83 (402)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCCccccccccccccccCcCCeE
Confidence 567788889999999999999999999999764 6799999999999999887421 12699
Q ss_pred EEEEcCCCCceEEEeeccccCCCcCCCCCcccc---ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEe
Q 023838 85 VAQIGSGSRPVVVLRADMDALPLQELVEWEHKS---KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQ 158 (276)
Q Consensus 85 ia~~~~~~~~~i~l~~H~DtVp~~~~~~w~~~~---~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~ 158 (276)
+++++++.+++|+|+||+||||++. .||.+ ++||++||||+ ||+++++++|++.|++.+.++++++.|+|+
T Consensus 84 ~a~~~~~~~~~lll~gH~DvVp~~~---~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~~~i~~~~~ 160 (402)
T PRK07338 84 HVSVRPEAPRQVLLTGHMDTVFPAD---HPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFERSPLADKLGYDVLIN 160 (402)
T ss_pred EEEECCCCCccEEEEeecCccCCCC---CcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEEE
Confidence 9999654346899999999999853 46764 57899999997 899999999999998877777899999999
Q ss_pred cCCCcc-ccHHHHHHcCCCCCCcEEEEEeccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcC-CCCCCCcHHHHHHH
Q 023838 159 PAEEGG-AGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAA-MPHSTIDPILTASS 236 (276)
Q Consensus 159 ~dEE~g-~g~~~~~~~~~~~~~d~~i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~-~p~~g~nAi~~~~~ 236 (276)
+|||.| .|++.+++++. .+.+++++.++ ..+.+.+. .+++|..+++|+++|+++|+| .|+.|.||+..+++
T Consensus 161 ~dEE~g~~g~~~~~~~~~-~~~~~~i~~ep--~~~~~~v~----~~~kG~~~~~v~v~G~~aHs~~~p~~g~nAi~~~~~ 233 (402)
T PRK07338 161 PDEEIGSPASAPLLAELA-RGKHAALTYEP--ALPDGTLA----GARKGSGNFTIVVTGRAAHAGRAFDEGRNAIVAAAE 233 (402)
T ss_pred CCcccCChhhHHHHHHHh-ccCcEEEEecC--CCCCCcEE----eecceeEEEEEEEEeEcccCCCCcccCccHHHHHHH
Confidence 999987 68898888753 34677777543 22233332 346799999999999999999 59999999999999
Q ss_pred HHHHHHHhHhhccCCCCCceEEEEEEEeeCCccccCCCCC
Q 023838 237 VILALQQLISREADPLQSLVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 237 ~i~~l~~~~~~~~~~~~~~~i~~~~i~~g~~~~nvIP~~a 276 (276)
++.+|+++..+ ....++|++.|+|| ...|+||++|
T Consensus 234 ~i~~l~~l~~~----~~~~t~~vg~i~gG-~~~nvVP~~a 268 (402)
T PRK07338 234 LALALHALNGQ----RDGVTVNVAKIDGG-GPLNVVPDNA 268 (402)
T ss_pred HHHHHHhhhcc----CCCcEEEEEEEecC-CCCceecccc
Confidence 99999886432 23579999999987 7999999986
No 14
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=100.00 E-value=1.4e-38 Score=292.77 Aligned_cols=237 Identities=21% Similarity=0.267 Sum_probs=192.6
Q ss_pred hhHHHHHHHHHHhhhCCCCCC-----cHHHHHHHHHHHHHhcCCC-eeecc-------C--CceEEEEEcCC-CCceEEE
Q 023838 35 QDKDWLVSVRRQIHENPELLF-----EEHNTSALIRRELDKLGIP-YAYPV-------A--KTGIVAQIGSG-SRPVVVL 98 (276)
Q Consensus 35 ~~~~~~~~~~~~l~~ips~s~-----~e~~~~~~l~~~l~~~G~~-~~~~~-------~--~~nvia~~~~~-~~~~i~l 98 (276)
++++++++++++|++|||+|+ +|.++++||.++|+++|++ +++.+ + ++|+++.+++. ++++|+|
T Consensus 2 ~~~~~~~~~l~~lv~i~s~s~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~nl~~~~~g~~~~~~lll 81 (400)
T PRK13983 2 ELRDEMIELLSELIAIPAVNPDFGGEGEKEKAEYLESLLKEYGFDEVERYDAPDPRVIEGVRPNIVAKIPGGDGKRTLWI 81 (400)
T ss_pred chHHHHHHHHHHHhCcCCCCCCCCCccHHHHHHHHHHHHHHcCCceEEEEecCCcccccCCCccEEEEecCCCCCCeEEE
Confidence 456789999999999999983 4889999999999999998 76431 1 58999999654 3479999
Q ss_pred eeccccCCCcCCCCCcccc----ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc--ccHHH
Q 023838 99 RADMDALPLQELVEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG--AGAFH 169 (276)
Q Consensus 99 ~~H~DtVp~~~~~~w~~~~----~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g--~g~~~ 169 (276)
+||+||||+++...|.++| +.+|++||||+ |+++++++.|++.|++.+..++++|.|+|++|||.| .|+++
T Consensus 82 ~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~g~~~ 161 (400)
T PRK13983 82 ISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLGIRPKYNLGLAFVSDEETGSKYGIQY 161 (400)
T ss_pred EeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhCCCCCCcEEEEEEeccccCCcccHHH
Confidence 9999999998777886554 45899999996 899999999999999888789999999999999976 48999
Q ss_pred HHHc--CCCCCCcEEEEEeccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHH-hHh
Q 023838 170 MIKE--GALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQ-LIS 246 (276)
Q Consensus 170 ~~~~--~~~~~~d~~i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~-~~~ 246 (276)
+++. +.+.+.|++++. +.++|++.. ...+++|..+++|+++|+++|+|.|+.|+||+..+++++..+++ +..
T Consensus 162 ~~~~~~~~~~~~d~~i~~--~~~~~~~~~---i~~~~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~ 236 (400)
T PRK13983 162 LLKKHPELFKKDDLILVP--DAGNPDGSF---IEIAEKSILWLKFTVKGKQCHASTPENGINAHRAAADFALELDEALHE 236 (400)
T ss_pred HHhhcccccCCCCEEEEe--cCCCCCCce---eEEeecceEEEEEEEEeEccccCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9976 556667888863 345677653 22457899999999999999999999999999999999999987 432
Q ss_pred hc--cCC-C--CCceEEEEEEEeeCCccccCCCCC
Q 023838 247 RE--ADP-L--QSLVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 247 ~~--~~~-~--~~~~i~~~~i~~g~~~~nvIP~~a 276 (276)
.. .++ + ...+++++.+.+|....|+||++|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~nvvp~~~ 271 (400)
T PRK13983 237 KFNAKDPLFDPPYSTFEPTKKEANVDNINTIPGRD 271 (400)
T ss_pred hhcccccccCCCCcccccceeecCCcCCcccCCee
Confidence 11 111 1 134778888987756899999975
No 15
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=3.2e-38 Score=288.18 Aligned_cols=234 Identities=16% Similarity=0.203 Sum_probs=188.8
Q ss_pred HHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeec--cCCceEEEEEcCCCCceEEEeeccccCCCcCCCCCccc
Q 023838 39 WLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYP--VAKTGIVAQIGSGSRPVVVLRADMDALPLQELVEWEHK 116 (276)
Q Consensus 39 ~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~--~~~~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~w~~~ 116 (276)
++++++++|++|||+|++|.+++++|.++|+++|+++++. ++++|++++++. ++|+|+|++|+||||+++...|+++
T Consensus 3 ~~~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~n~~~~~g~-~~~~i~l~~H~D~Vp~g~~~~w~~~ 81 (375)
T PRK13009 3 DVLELAQDLIRRPSVTPDDAGCQDLLAERLEALGFTCERMDFGDVKNLWARRGT-EGPHLCFAGHTDVVPPGDLEAWTSP 81 (375)
T ss_pred hHHHHHHHHhCCCCCCCchhhHHHHHHHHHHHcCCeEEEeccCCCcEEEEEecC-CCCEEEEEeecccCCCCCcccCCCC
Confidence 5789999999999999999999999999999999998753 346899999843 4699999999999999877789654
Q ss_pred c----ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc--ccHHHHHHcCC--CCCCcEEEEE
Q 023838 117 S----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG--AGAFHMIKEGA--LGDSEAIFGM 185 (276)
Q Consensus 117 ~----~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g--~g~~~~~~~~~--~~~~d~~i~~ 185 (276)
| +.||++||||+ |+++++++.+++.|++.+..++++|.|+|++|||.+ .|++.+++... ..+.|++++.
T Consensus 82 Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~~~G~~~~~~~~~~~~~~~d~~i~~ 161 (375)
T PRK13009 82 PFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAHPDHKGSIAFLITSDEEGPAINGTVKVLEWLKARGEKIDYCIVG 161 (375)
T ss_pred CCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhcCCCCceEEEEEEeecccccccCHHHHHHHHHHcCcCCCEEEEc
Confidence 3 46899999987 899999999999998877778899999999999975 58988875311 1247888875
Q ss_pred eccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHhHhhcc-CCCCCceEEEEEEEe
Q 023838 186 HIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREA-DPLQSLVCLSLLLSI 264 (276)
Q Consensus 186 ~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~-~~~~~~~i~~~~i~~ 264 (276)
++....+.+. ....+++|..+++|+++|+++|++.|+.|.||+..+++++.+|+.+..++. ..+.+.+++++.|++
T Consensus 162 ep~~~~~~~~---~i~~g~~g~~~~~i~v~G~~~Ha~~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~i~~ 238 (375)
T PRK13009 162 EPTSTERLGD---VIKNGRRGSLTGKLTVKGVQGHVAYPHLADNPIHLAAPALAELAATEWDEGNEFFPPTSLQITNIDA 238 (375)
T ss_pred CCCcccCCCC---eEEEecceEEEEEEEEEecCcccCCCCcccCHHHHHHHHHHHHHhhhccCCCccCCCceEEEEEEec
Confidence 4322111111 123356799999999999999999999999999999999999987543222 234567999999998
Q ss_pred eCCccccCCCCC
Q 023838 265 YSETCELLPLKA 276 (276)
Q Consensus 265 g~~~~nvIP~~a 276 (276)
|....|+||++|
T Consensus 239 G~~~~nvip~~~ 250 (375)
T PRK13009 239 GTGATNVIPGEL 250 (375)
T ss_pred CCCCCcccCCcE
Confidence 755789999975
No 16
>PRK07522 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=2.8e-38 Score=289.50 Aligned_cols=227 Identities=19% Similarity=0.232 Sum_probs=185.6
Q ss_pred HHHHHHHHHhhhCCCCCCcH-HHHHHHHHHHHHhcCCCeeec----cCCceEEEEEcCCCCceEEEeeccccCCCcCCCC
Q 023838 38 DWLVSVRRQIHENPELLFEE-HNTSALIRRELDKLGIPYAYP----VAKTGIVAQIGSGSRPVVVLRADMDALPLQELVE 112 (276)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~e-~~~~~~l~~~l~~~G~~~~~~----~~~~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~ 112 (276)
.++++++++|++|||+|++| .++++||.++|+++|+++++. .+++|++++++++++|+|+|+||+||||+++ ..
T Consensus 4 ~~~~~~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~nv~a~~~~~~~~~ill~~H~Dtv~~~~-~~ 82 (385)
T PRK07522 4 MSSLDILERLVAFDTVSRDSNLALIEWVRDYLAAHGVESELIPDPEGDKANLFATIGPADRGGIVLSGHTDVVPVDG-QA 82 (385)
T ss_pred hhHHHHHHHHhCCCCcCCCccHHHHHHHHHHHHHcCCeEEEEecCCCCcccEEEEeCCCCCCeEEEEeecccccCCC-CC
Confidence 46899999999999999887 599999999999999998652 2358999999754468999999999999865 46
Q ss_pred Cccc---c-ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHHHHcCC--CCCCcEE
Q 023838 113 WEHK---S-KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGA--LGDSEAI 182 (276)
Q Consensus 113 w~~~---~-~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~~~~~~--~~~~d~~ 182 (276)
|.++ + .+||++||||+ ||++++++++++.|++. .++++|.|+|++|||.| .|++++++... ..+.|++
T Consensus 83 W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~i~~~~~~dEE~g~~G~~~l~~~~~~~~~~~d~~ 160 (385)
T PRK07522 83 WTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAA--PLRRPLHLAFSYDEEVGCLGVPSMIARLPERGVKPAGC 160 (385)
T ss_pred CCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhC--CCCCCEEEEEEeccccCCccHHHHHHHhhhcCCCCCEE
Confidence 8644 3 35899999996 99999999999999876 36789999999999987 89999987521 1236887
Q ss_pred EEEeccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHhHhhccC--C----C--CC
Q 023838 183 FGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREAD--P----L--QS 254 (276)
Q Consensus 183 i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~--~----~--~~ 254 (276)
+. ++|++. ....+++|..+++|+++|+++|+|.|+.|+||+..+++++..|+++..+... + + ..
T Consensus 161 i~-----~ep~~~---~~~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 232 (385)
T PRK07522 161 IV-----GEPTSM---RPVVGHKGKAAYRCTVRGRAAHSSLAPQGVNAIEYAARLIAHLRDLADRLAAPGPFDALFDPPY 232 (385)
T ss_pred EE-----ccCCCC---eeeeeecceEEEEEEEEeeccccCCCccCcCHHHHHHHHHHHHHHHHHHHhhcCCCCcCCCCCc
Confidence 76 556543 2234577999999999999999999999999999999999999987543211 1 1 13
Q ss_pred ceEEEEEEEeeCCccccCCCCC
Q 023838 255 LVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 255 ~~i~~~~i~~g~~~~nvIP~~a 276 (276)
++++++.|+|| ...|+||++|
T Consensus 233 ~t~~i~~i~gG-~~~nviP~~a 253 (385)
T PRK07522 233 STLQTGTIQGG-TALNIVPAEC 253 (385)
T ss_pred ceeEEeeeecC-ccccccCCce
Confidence 78999999986 7999999986
No 17
>PRK08596 acetylornithine deacetylase; Validated
Probab=100.00 E-value=8.3e-38 Score=289.74 Aligned_cols=237 Identities=17% Similarity=0.127 Sum_probs=194.0
Q ss_pred HHHHHHHhhHHHHHHHHHHhhhCCCCC---CcHHHHHHHHHHHHHhcCCCeeec---cCCceEEEEEcCC-C--CceEEE
Q 023838 28 QVMISAQQDKDWLVSVRRQIHENPELL---FEEHNTSALIRRELDKLGIPYAYP---VAKTGIVAQIGSG-S--RPVVVL 98 (276)
Q Consensus 28 ~i~~~i~~~~~~~~~~~~~l~~ips~s---~~e~~~~~~l~~~l~~~G~~~~~~---~~~~nvia~~~~~-~--~~~i~l 98 (276)
++.++++++++++++++++|++|||++ ++|.++++||+++|+++|+++++. ++++|+++++++. + +|+|+|
T Consensus 3 ~~~~~i~~~~~~~~~~l~~Lv~i~S~s~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~nvia~~~g~~~~~~~~lll 82 (421)
T PRK08596 3 QLLEQIELRKDELLELLKTLVRFETPAPPARNTNEAQEFIAEFLRKLGFSVDKWDVYPNDPNVVGVKKGTESDAYKSLII 82 (421)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHCCCeEEEEEccCCCceEEEEecCCCCCCCcEEEE
Confidence 466778888899999999999999998 478899999999999999998763 3578999999643 2 368999
Q ss_pred eeccccCCCcCCCCCcccc----ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHH
Q 023838 99 RADMDALPLQELVEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHM 170 (276)
Q Consensus 99 ~~H~DtVp~~~~~~w~~~~----~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~ 170 (276)
+||+||||+++...|+++| ++||++||||+ ||++++++.|+++|++.+..++++|.|+|++|||.| .|++++
T Consensus 83 ~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~G~~~~ 162 (421)
T PRK08596 83 NGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAGIELPGDLIFQSVIGEEVGEAGTLQC 162 (421)
T ss_pred eccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcCCCCCCcEEEEEEeccccCCcCHHHH
Confidence 9999999998777796553 46899999998 899999999999999988788999999999999987 799999
Q ss_pred HHcCCCCCCcEEEEEeccCCCCcccEEeeccceeeeEEEEEEEEEcc----------CCCcCCCCCCCcHHHHHHHHHHH
Q 023838 171 IKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGR----------GGHAAMPHSTIDPILTASSVILA 240 (276)
Q Consensus 171 ~~~~~~~~~d~~i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~----------~~Hs~~p~~g~nAi~~~~~~i~~ 240 (276)
++++. ..|++++.+ |++.. ..+++|...++++++|. .+|++.|+.|.||+..++++|..
T Consensus 163 ~~~~~--~~d~~i~~e-----p~~~~----~~~~~G~~~~~~~v~g~~~~~~~~~~~~~H~~~p~~G~nai~~~~~~i~~ 231 (421)
T PRK08596 163 CERGY--DADFAVVVD-----TSDLH----MQGQGGVITGWITVKSPQTFHDGTRRQMIHAGGGLFGASAIEKMMKIIQS 231 (421)
T ss_pred HhcCC--CCCEEEECC-----CCCCc----cccccceeeEEEEEEeecccccccccccccccCCccCcCHHHHHHHHHHH
Confidence 98864 478888743 33322 12456777666777665 47999999999999999999999
Q ss_pred HHHhHhh----ccCC---CCCceEEEEEEEeeCCccccCCCCC
Q 023838 241 LQQLISR----EADP---LQSLVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 241 l~~~~~~----~~~~---~~~~~i~~~~i~~g~~~~nvIP~~a 276 (276)
|+++... ...+ ...+++|++.|+|| ...|+||++|
T Consensus 232 l~~~~~~~~~~~~~~~~~~~~~t~~v~~i~gG-~~~nvvP~~~ 273 (421)
T PRK08596 232 LQELERHWAVMKSYPGFPPGTNTINPAVIEGG-RHAAFIADEC 273 (421)
T ss_pred HHHHHHHHhhcccCccCCCCCcceeeeeeeCC-CCCCccCceE
Confidence 9886421 1111 23579999999987 7999999975
No 18
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=100.00 E-value=5e-38 Score=286.53 Aligned_cols=232 Identities=17% Similarity=0.250 Sum_probs=185.4
Q ss_pred HHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeec--cCCceEEEEEcCCCCceEEEeeccccCCCcCCCCCccc--
Q 023838 41 VSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYP--VAKTGIVAQIGSGSRPVVVLRADMDALPLQELVEWEHK-- 116 (276)
Q Consensus 41 ~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~--~~~~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~w~~~-- 116 (276)
++++++|++|||+|++|.++++||+++|+++|+++++. ++++|+++.+++ ++|+|+|++|+||||+++...|.++
T Consensus 2 ~~~l~~lv~ips~s~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~~~~~~g~-~~~~i~~~~H~DtVp~~~~~~W~~~p~ 80 (370)
T TIGR01246 2 TELAKELISRPSVTPNDAGCQDIIAERLEKLGFEIEWMHFGDTKNLWATRGT-GEPVLAFAGHTDVVPAGPEEQWSSPPF 80 (370)
T ss_pred hHHHHHHhcCCCCCcchHHHHHHHHHHHHHCCCEEEEEecCCCceEEEEecC-CCcEEEEEccccccCCCCccccccCCC
Confidence 68899999999999999999999999999999998653 356799998744 4599999999999999877788644
Q ss_pred -c-ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc--ccHHHHHHcCC--CCCCcEEEEEec
Q 023838 117 -S-KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG--AGAFHMIKEGA--LGDSEAIFGMHI 187 (276)
Q Consensus 117 -~-~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g--~g~~~~~~~~~--~~~~d~~i~~~~ 187 (276)
+ .+||++||||+ |+++++++.+++.+++.+.+++++|+|+|++|||.+ .|++.+++... ...+|++++.++
T Consensus 81 ~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~~~G~~~~~~~~~~~~~~~d~~i~~ep 160 (370)
T TIGR01246 81 EPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKGSISLLITSDEEGTAIDGTKKVVETLMARDELIDYCIVGEP 160 (370)
T ss_pred CcEEECCEEEecccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeccccCCCcCHHHHHHHHHhcCCCCCEEEEcCC
Confidence 3 46899999986 799999999999888877678899999999999975 58888875311 124788887543
Q ss_pred cCCCCcccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHhHhhcc-CCCCCceEEEEEEEeeC
Q 023838 188 DVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREA-DPLQSLVCLSLLLSIYS 266 (276)
Q Consensus 188 ~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~-~~~~~~~i~~~~i~~g~ 266 (276)
....+.+.. ...+++|..+++++++|+++|++.|+.|+||+..+++++..|++...... ..+.+++++++.|++|.
T Consensus 161 ~~~~~~~~~---i~~~~~G~~~~~v~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~t~~i~~i~~g~ 237 (370)
T TIGR01246 161 SSVKKLGDV---IKNGRRGSITGNLTIKGIQGHVAYPHLANNPIHKAAPALAELTAIKWDEGNEFFPPTSLQITNIHAGT 237 (370)
T ss_pred CCcccCCce---EEEeeeEEEEEEEEEEccCcccCCcccCCCHHHHHHHHHHHHhhhhhccCCccCCCCceEeeeeecCC
Confidence 221122211 23456799999999999999999999999999999999999987532211 12456799999999874
Q ss_pred CccccCCCCC
Q 023838 267 ETCELLPLKA 276 (276)
Q Consensus 267 ~~~nvIP~~a 276 (276)
...|+||++|
T Consensus 238 ~~~nvvP~~~ 247 (370)
T TIGR01246 238 GANNVIPGEL 247 (370)
T ss_pred CCCcccCCce
Confidence 4789999975
No 19
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=100.00 E-value=6.7e-38 Score=284.87 Aligned_cols=222 Identities=21% Similarity=0.290 Sum_probs=183.7
Q ss_pred HHHHHhhhCCCCCCcH-HHHHHHHHHHHHhcCCCeeecc-----CCceEEEEEcCCCCceEEEeeccccCCCcCCCCCcc
Q 023838 42 SVRRQIHENPELLFEE-HNTSALIRRELDKLGIPYAYPV-----AKTGIVAQIGSGSRPVVVLRADMDALPLQELVEWEH 115 (276)
Q Consensus 42 ~~~~~l~~ips~s~~e-~~~~~~l~~~l~~~G~~~~~~~-----~~~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~w~~ 115 (276)
+++++|++|||+++++ .++++||.++|+++|+++++.+ .++|+++.+++.++|+|+|+||+||||+++ ..|.+
T Consensus 1 ~~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~nl~~~~~~~~~~~i~l~~H~Dtvp~~~-~~w~~ 79 (364)
T TIGR01892 1 EILTKLVAFDSTSFRPNVDLIDWAQAYLEALGFSVEVQPFPDGAEKSNLVAVIGPSGAGGLALSGHTDVVPYDD-AAWTR 79 (364)
T ss_pred ChHHHhhCcCCcCCccHHHHHHHHHHHHHHcCCeEEEEeCCCCCccccEEEEecCCCCCeEEEEcccccccCCC-CcCCC
Confidence 4688999999999865 7999999999999999987532 368999999653458999999999999875 47864
Q ss_pred cc----ccCCeeecCC---ccHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHHHHcCCCCCCcEEEEEec
Q 023838 116 KS----KIDGKMHACG---HDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMHI 187 (276)
Q Consensus 116 ~~----~~~g~l~g~G---~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~~~~~~~~~~d~~i~~~~ 187 (276)
+| +++|++|||| +|+++++++++++.|++. .++++|.|+|++|||.| .|++++++++.+ +.|++++
T Consensus 80 ~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~~EE~g~~G~~~~~~~~~~-~~d~~i~--- 153 (364)
T TIGR01892 80 DPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAE--QLKKPLHLALTADEEVGCTGAPKMIEAGAG-RPRHAII--- 153 (364)
T ss_pred CCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhc--CcCCCEEEEEEeccccCCcCHHHHHHhcCC-CCCEEEE---
Confidence 43 5689999999 599999999999999875 36889999999999987 799999988753 4788776
Q ss_pred cCCCCcccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHhHhhcc-----CCC--CCceEEEE
Q 023838 188 DVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREA-----DPL--QSLVCLSL 260 (276)
Q Consensus 188 ~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~-----~~~--~~~~i~~~ 260 (276)
++|++.... .+++|..+++|+++|+++|++.|+.|.||+..+++++.+|+++..... .++ ..+++|++
T Consensus 154 --~ep~~~~~~---~~~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ 228 (364)
T TIGR01892 154 --GEPTRLIPV---RAHKGYASAEVTVRGRSGHSSYPDSGVNAIFRAGRFLQRLVHLADTLLREDLDEGFTPPYTTLNIG 228 (364)
T ss_pred --CCCCCceeE---EeeceEEEEEEEEEcccccccCCccCcCHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCceEEEe
Confidence 566665322 346799999999999999999999999999999999999988653211 111 24799999
Q ss_pred EEEeeCCccccCCCCC
Q 023838 261 LLSIYSETCELLPLKA 276 (276)
Q Consensus 261 ~i~~g~~~~nvIP~~a 276 (276)
.|+|| ...|+||++|
T Consensus 229 ~i~gg-~~~nviP~~~ 243 (364)
T TIGR01892 229 VIQGG-KAVNIIPGAC 243 (364)
T ss_pred eeecC-CCCcccCCeE
Confidence 99987 7999999975
No 20
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=100.00 E-value=2.5e-38 Score=289.11 Aligned_cols=227 Identities=18% Similarity=0.250 Sum_probs=187.1
Q ss_pred HHHHHhhhCCC---CCCcHHHHHHHHHHHHHhcCCCeeecc---CCc----eEEEEEcCC-CCceEEEeeccccCCCcCC
Q 023838 42 SVRRQIHENPE---LLFEEHNTSALIRRELDKLGIPYAYPV---AKT----GIVAQIGSG-SRPVVVLRADMDALPLQEL 110 (276)
Q Consensus 42 ~~~~~l~~ips---~s~~e~~~~~~l~~~l~~~G~~~~~~~---~~~----nvia~~~~~-~~~~i~l~~H~DtVp~~~~ 110 (276)
+++++|++||| ++++|.++++||+++|+++|+++++.. +.. |+++.+.+. ++|+|+|++||||||+++.
T Consensus 2 ~~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ill~~H~DtVp~~~~ 81 (375)
T TIGR01910 2 ELLKDLISIPSVNPPGGNEETIANYIKDLLREFGFSTDVIEITDDRLKVLGKVVVKEPGNGNEKSLIFNGHYDVVPAGDL 81 (375)
T ss_pred hhHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCCCceEEEecCchhcccccceEEeccCCCCCCEEEEecccccccCCCh
Confidence 67899999999 888999999999999999999986531 223 356665543 3599999999999999877
Q ss_pred CCCcccc----ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHHHHcCCCCCCcEE
Q 023838 111 VEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAI 182 (276)
Q Consensus 111 ~~w~~~~----~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~~~~~~~~~~d~~ 182 (276)
.+|+++| +++|++||||+ |+++++++++++.|++.+..++++|.|+|+++||.| .|++.+++++.+++.|++
T Consensus 82 ~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~G~~~~~~~~~~~~~d~~ 161 (375)
T TIGR01910 82 ELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQSVVDEESGEAGTLYLLQRGYFKDADGV 161 (375)
T ss_pred hhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEEcCcccCchhHHHHHHcCCCCCCCEE
Confidence 7896543 46899999997 899999999999999887778999999999999987 799999998877668888
Q ss_pred EEEeccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHhHhhccC------CCCCce
Q 023838 183 FGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREAD------PLQSLV 256 (276)
Q Consensus 183 i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~------~~~~~~ 256 (276)
++. +|++... ...+++|..+++|+++|+++|+|.|+.|.||+..+++++.+|+++...... ....++
T Consensus 162 i~~-----~~~~~~~--v~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~t 234 (375)
T TIGR01910 162 LIP-----EPSGGDN--IVIGHKGSIWFKLRVKGKQAHASFPQFGVNAIMKLAKLITELNELEEHIYARNSYGFIPGPIT 234 (375)
T ss_pred EEC-----CCCCCCc--eEEEecceEEEEEEEeeeecccCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccccccCCCcc
Confidence 873 3332111 123577999999999999999999999999999999999999987643211 124689
Q ss_pred EEEEEEEeeCCccccCCCCC
Q 023838 257 CLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 257 i~~~~i~~g~~~~nvIP~~a 276 (276)
++++.|+|| ...|+||++|
T Consensus 235 ~~i~~i~gG-~~~nviP~~~ 253 (375)
T TIGR01910 235 FNPGVIKGG-DWVNSVPDYC 253 (375)
T ss_pred ccceeEECC-CCcCcCCCEE
Confidence 999999987 7999999975
No 21
>PRK05111 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=7e-38 Score=286.79 Aligned_cols=225 Identities=21% Similarity=0.250 Sum_probs=184.4
Q ss_pred HHHHHHHHHhhhCCCCCCcH-------HHHHHHHHHHHHhcCCCeeecc-----CCceEEEEEcCCCCceEEEeeccccC
Q 023838 38 DWLVSVRRQIHENPELLFEE-------HNTSALIRRELDKLGIPYAYPV-----AKTGIVAQIGSGSRPVVVLRADMDAL 105 (276)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~e-------~~~~~~l~~~l~~~G~~~~~~~-----~~~nvia~~~~~~~~~i~l~~H~DtV 105 (276)
+++++++++|++|||+|++| .++++||.++|+++|++++... +++|++++++++ .++|+|+||+|||
T Consensus 5 ~~~i~~l~~lv~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~nvia~~g~~-~~~il~~~H~Dvv 83 (383)
T PRK05111 5 PSFIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFNVEIQPVPGTRGKFNLLASLGSG-EGGLLLAGHTDTV 83 (383)
T ss_pred hHHHHHHHHHhCcCCcCCCCcccccchHHHHHHHHHHHHHCCCeEEEEecCCCCCCceEEEEeCCC-CCeEEEEeeecee
Confidence 47999999999999999865 5799999999999999876531 467999999533 3689999999999
Q ss_pred CCcCCCCCc---ccc-ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHHHHcCCCC
Q 023838 106 PLQELVEWE---HKS-KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALG 177 (276)
Q Consensus 106 p~~~~~~w~---~~~-~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~~~~~~~~ 177 (276)
|+++ ..|. |++ ++||++||||+ ||++++++.+++.|++. .++++|.|+|++|||.| .|++++++++.++
T Consensus 84 p~~~-~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~i~~~~~~~EE~g~~G~~~~~~~~~~~ 160 (383)
T PRK05111 84 PFDE-GRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLT--KLKKPLYILATADEETSMAGARAFAEATAIR 160 (383)
T ss_pred cCCC-CcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhc--CCCCCeEEEEEeccccCcccHHHHHhcCCCC
Confidence 9854 4575 443 46899999996 99999999999999864 36789999999999987 7999999886553
Q ss_pred CCcEEEEEeccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHhHhhc----cCC--
Q 023838 178 DSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISRE----ADP-- 251 (276)
Q Consensus 178 ~~d~~i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~----~~~-- 251 (276)
.|++++ ++|++.. +..+++|..+++|+++|+++|+|.|+.|.||+..+++++..++++.... ..+
T Consensus 161 -~d~~i~-----~ep~~~~---~~~~~~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~ 231 (383)
T PRK05111 161 -PDCAII-----GEPTSLK---PVRAHKGHMSEAIRITGQSGHSSDPALGVNAIELMHDVIGELLQLRDELQERYHNPAF 231 (383)
T ss_pred -CCEEEE-----cCCCCCc---eeecccceEEEEEEEEeechhccCCccCcCHHHHHHHHHHHHHHHHHHHhccCCCccC
Confidence 587776 5565532 1235789999999999999999999999999999999999998865321 112
Q ss_pred -CCCceEEEEEEEeeCCccccCCCCC
Q 023838 252 -LQSLVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 252 -~~~~~i~~~~i~~g~~~~nvIP~~a 276 (276)
...+++|++.|+|| ...|+||++|
T Consensus 232 ~~~~~t~~i~~i~gg-~~~NvVP~~~ 256 (383)
T PRK05111 232 TVPYPTLNLGHIHGG-DAPNRICGCC 256 (383)
T ss_pred CCCCCceeEeeeecC-CcCcccCCce
Confidence 13678999999987 7999999975
No 22
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=100.00 E-value=6.2e-38 Score=286.20 Aligned_cols=225 Identities=18% Similarity=0.184 Sum_probs=178.5
Q ss_pred HHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCC-eeeccCCceEEEEEcCCCCceEEEeeccccCCCcC--CCCCccc---
Q 023838 43 VRRQIHENPELLFEEHNTSALIRRELDKLGIP-YAYPVAKTGIVAQIGSGSRPVVVLRADMDALPLQE--LVEWEHK--- 116 (276)
Q Consensus 43 ~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~-~~~~~~~~nvia~~~~~~~~~i~l~~H~DtVp~~~--~~~w~~~--- 116 (276)
++++|++|||+|++|.++++||.++|+++|++ ++....+.|++++++++++|+|+|+||+||||+++ ...|.++
T Consensus 1 ll~~Lv~ipS~s~~e~~~~~~i~~~l~~~g~~~~~~~~~~~nvva~~~~~~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~ 80 (373)
T TIGR01900 1 LLQQIMDIFSPSDHEGPIADEIEAALNNLELEGLEVFRFGDNVLARTDFGKASRVILAGHIDTVPIADNFPPKWLEPGDS 80 (373)
T ss_pred ChHHHhCCCCCCchHHHHHHHHHHHHhhccccCceEEEECCEEEEecCCCCCCeEEEeCccccccCCCCChhhhccCccc
Confidence 47899999999999999999999999999653 22211245999998644468999999999999864 2457542
Q ss_pred ---------cccCCeeecCCc---cHHHHHHHHHHHHHHh--ccCCCCceEEEEEecCCCcc---ccHHHHHHcCC-CCC
Q 023838 117 ---------SKIDGKMHACGH---DVHTTMLLGAAKLIHQ--RKDKLKGTVRILFQPAEEGG---AGAFHMIKEGA-LGD 178 (276)
Q Consensus 117 ---------~~~~g~l~g~G~---kg~~a~~l~a~~~l~~--~~~~~~~~v~~~~~~dEE~g---~g~~~~~~~~~-~~~ 178 (276)
.++||++||||+ |+++++++.|++.|++ .+..++++|.|+|++|||.+ .|+..++++.. +.+
T Consensus 81 ~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~~~~~~~i~~~~~~dEE~~~~~~G~~~~~~~~~~~~~ 160 (373)
T TIGR01900 81 LIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLDGRAPETELKHDLTLIAYDCEEVAAEKNGLGHIRDAHPDWLA 160 (373)
T ss_pred ccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHhhhccccCCCCCEEEEEEecccccCCCCCHHHHHHhCccccc
Confidence 246899999998 8999999999999964 34467899999999999975 49999987632 235
Q ss_pred CcEEEEEeccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHhHhhcc--CC-CCCc
Q 023838 179 SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREA--DP-LQSL 255 (276)
Q Consensus 179 ~d~~i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~--~~-~~~~ 255 (276)
.|++++. +|++. ....+++|..+++|+++|+++|+|.|+.|.||++.+++++..|+++..... ++ ....
T Consensus 161 ~d~~iv~-----Ept~~---~i~~g~~G~~~~~i~v~G~~~H~s~p~~g~NAi~~~~~~i~~l~~l~~~~~~~~~~~~~~ 232 (373)
T TIGR01900 161 ADFAIIG-----EPTGG---GIEAGCNGNIRFDVTAHGVAAHSARAWLGDNAIHKAADIINKLAAYEAAEVNIDGLDYRE 232 (373)
T ss_pred CCEEEEE-----CCCCC---cccccceeeEEEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHHHhhcccccccCCcccc
Confidence 7888873 44442 123468899999999999999999999999999999999999988654221 11 1247
Q ss_pred eEEEEEEEeeCCccccCCCCC
Q 023838 256 VCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 256 ~i~~~~i~~g~~~~nvIP~~a 276 (276)
++|++.|+|| .+.|+||++|
T Consensus 233 t~~v~~I~GG-~~~nvVP~~a 252 (373)
T TIGR01900 233 GLNATFCEGG-KANNVIPDEA 252 (373)
T ss_pred eEEEEEEeCC-CCCcccCCeE
Confidence 8999999987 7999999975
No 23
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=100.00 E-value=2.2e-37 Score=285.20 Aligned_cols=234 Identities=17% Similarity=0.163 Sum_probs=187.9
Q ss_pred HHHHHHHHHhhhCCCCCCc--HHHHHHHHHHHHHhcCCCeeec---cCCceEEEEEcCC-C-CceEEEeeccccCCCcCC
Q 023838 38 DWLVSVRRQIHENPELLFE--EHNTSALIRRELDKLGIPYAYP---VAKTGIVAQIGSG-S-RPVVVLRADMDALPLQEL 110 (276)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~--e~~~~~~l~~~l~~~G~~~~~~---~~~~nvia~~~~~-~-~~~i~l~~H~DtVp~~~~ 110 (276)
++++++|++|++|||++++ |.++++||.++|+++|+++++. ++++|++++++++ + .|+|+|++|+||||+++
T Consensus 9 ~~~~~~l~~lv~ipS~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~g~~~l~~~~~g~~~~~~~i~l~~H~DvVp~~~- 87 (400)
T TIGR01880 9 DIAVTRFREYLRINTVQPNPDYAACVDFLIKQADELGLARKTIEFVPGKPVVVLTWPGSNPELPSILLNSHTDVVPVFR- 87 (400)
T ss_pred HHHHHHHHHHhccCccCCCccHHHHHHHHHHHHHhCCCceeEEEecCCceeEEEEEecCCCCCCeEEEEcccccCCCCc-
Confidence 6888999999999999754 6899999999999999987642 3578999999653 3 38999999999999865
Q ss_pred CCCc---ccc-c-cCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc--ccHHHHHHcCCCCCCc
Q 023838 111 VEWE---HKS-K-IDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG--AGAFHMIKEGALGDSE 180 (276)
Q Consensus 111 ~~w~---~~~-~-~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g--~g~~~~~~~~~~~~~d 180 (276)
..|. |.+ + +||++||||+ |+++++++.|++.|++.+..++++|.|+|++|||.| .|++++++++.+.+.|
T Consensus 88 ~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~~~~~~v~l~~~~dEE~g~~~G~~~~~~~~~~~~~~ 167 (400)
T TIGR01880 88 EHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASGFKFKRTIHISFVPDEEIGGHDGMEKFAKTDEFKALN 167 (400)
T ss_pred ccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcCCCCCceEEEEEeCCcccCcHhHHHHHHHhhhccCCc
Confidence 4575 444 2 5899999998 799999999999999888788999999999999986 4999999887666667
Q ss_pred EEEEEeccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHhHhhc---------cCC
Q 023838 181 AIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISRE---------ADP 251 (276)
Q Consensus 181 ~~i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~---------~~~ 251 (276)
..++++..-.+|++.. ..+.+++|..+++|+++|+++||+.|. +.||+..+++++..|+++.... ..+
T Consensus 168 ~~~~~d~g~~~~~~~~--~i~~~~kG~~~~~l~v~G~~~Hs~~~~-~~nai~~l~~~i~~l~~~~~~~~~~~~~~~~~~~ 244 (400)
T TIGR01880 168 LGFALDEGLASPDDVY--RVFYAERVPWWVVVTAPGNPGHGSKLM-ENTAMEKLEKSVESIRRFRESQFQLLQSNPDLAI 244 (400)
T ss_pred eEEEEcCCCccccccc--ceeEEeeEEEEEEEEEecCCCCCCCCC-CCCHHHHHHHHHHHHHHhhHHHHHHHhcCccccc
Confidence 7777643222344422 334578899999999999999999764 4799999999999887753210 111
Q ss_pred CCCceEEEEEEEeeCCccccCCCCC
Q 023838 252 LQSLVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 252 ~~~~~i~~~~i~~g~~~~nvIP~~a 276 (276)
...+++|++.|+|| ...|+||++|
T Consensus 245 ~~~~t~~v~~i~gG-~~~nvIP~~a 268 (400)
T TIGR01880 245 GDVTSVNLTKLKGG-VQSNVIPSEA 268 (400)
T ss_pred cccceeecceeccC-CcCCcCCCcc
Confidence 12479999999987 7999999986
No 24
>PRK07473 carboxypeptidase; Provisional
Probab=100.00 E-value=3.7e-37 Score=281.32 Aligned_cols=225 Identities=16% Similarity=0.167 Sum_probs=183.5
Q ss_pred HHHHHHHHHHhhhCCCCCCcHH---HHHHHHHHHHHhcCCCeeecc---C-CceEEEEEcCC--CCceEEEeeccccCCC
Q 023838 37 KDWLVSVRRQIHENPELLFEEH---NTSALIRRELDKLGIPYAYPV---A-KTGIVAQIGSG--SRPVVVLRADMDALPL 107 (276)
Q Consensus 37 ~~~~~~~~~~l~~ips~s~~e~---~~~~~l~~~l~~~G~~~~~~~---~-~~nvia~~~~~--~~~~i~l~~H~DtVp~ 107 (276)
++++++++++|++|||++++|. ++++|+.++|+++|++++..+ + .+|+++++++. .+|+|+|+||+||||+
T Consensus 10 ~~~~~~~l~~Lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~gH~DtV~~ 89 (376)
T PRK07473 10 SEAMLAGLRPWVECESPTWDAAAVNRMLDLAARDMAIMGATIERIPGRQGFGDCVRARFPHPRQGEPGILIAGHMDTVHP 89 (376)
T ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCeEEEEeCCCCCCCCeEEEEecCCCCCC
Confidence 5789999999999999999875 677899999999999987643 2 24899998642 3589999999999976
Q ss_pred cC-CCCCccccccCCeeecCC---ccHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHHHHcCCCCCCcEE
Q 023838 108 QE-LVEWEHKSKIDGKMHACG---HDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAI 182 (276)
Q Consensus 108 ~~-~~~w~~~~~~~g~l~g~G---~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~~~~~~~~~~d~~ 182 (276)
.. ...+||. +++|++|||| +||++++++.|+++|++.+..++++|.|+|++|||.| .|++.+++++.. +.|++
T Consensus 90 ~~~~~~~p~~-~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~~g~~~~~~~~~~-~~d~~ 167 (376)
T PRK07473 90 VGTLEKLPWR-REGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPITVLFTPDEEVGTPSTRDLIEAEAA-RNKYV 167 (376)
T ss_pred CCCccCCCeE-EECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCcccCCccHHHHHHHhhc-cCCEE
Confidence 33 2223453 5689999999 5999999999999999887667789999999999987 799999986533 47888
Q ss_pred EEEeccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcC-CCCCCCcHHHHHHHHHHHHHHhHhhccCCCCCceEEEEE
Q 023838 183 FGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAA-MPHSTIDPILTASSVILALQQLISREADPLQSLVCLSLL 261 (276)
Q Consensus 183 i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~-~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~~~ 261 (276)
|+.++ +...+.+ ..+++|..+++|+++|+++|++ .|+.|+||+..+++++.+|+++.. ...++|+|.
T Consensus 168 iv~ep--~~~~~~v----~~~~~G~~~~~v~~~G~~aHag~~p~~g~nAi~~~~~~i~~l~~~~~------~~~~~~vg~ 235 (376)
T PRK07473 168 LVPEP--GRPDNGV----VTGRYAIARFNLEATGRPSHAGATLSEGRSAIREMARQILAIDAMTT------EDCTFSVGI 235 (376)
T ss_pred EEeCC--CCCCCCE----EEECeeeEEEEEEEEeEcCCCCCCcccCcCHHHHHHHHHHHHHHhcC------CCceEeEee
Confidence 88542 2211222 2357899999999999999987 799999999999999999988642 246899999
Q ss_pred EEeeCCccccCCCCC
Q 023838 262 LSIYSETCELLPLKA 276 (276)
Q Consensus 262 i~~g~~~~nvIP~~a 276 (276)
|+|| ...|+||++|
T Consensus 236 i~gg-~~~n~VP~~~ 249 (376)
T PRK07473 236 VHGG-QWVNCVATTC 249 (376)
T ss_pred EEcC-CCCcCCCCce
Confidence 9987 6899999986
No 25
>PRK08201 hypothetical protein; Provisional
Probab=100.00 E-value=3.6e-37 Score=288.25 Aligned_cols=215 Identities=16% Similarity=0.213 Sum_probs=172.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhCCCCCC------cHHHHHHHHHHHHHhcCCC-eeec--cCCceEEEEEcCC-CCce
Q 023838 26 TNQVMISAQQDKDWLVSVRRQIHENPELLF------EEHNTSALIRRELDKLGIP-YAYP--VAKTGIVAQIGSG-SRPV 95 (276)
Q Consensus 26 ~~~i~~~i~~~~~~~~~~~~~l~~ips~s~------~e~~~~~~l~~~l~~~G~~-~~~~--~~~~nvia~~~~~-~~~~ 95 (276)
.+++.++++++.+++++++++|++|||+++ +|.++++||+++|+++|++ ++.. .+++|+++++.++ ++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~l~~LV~i~Svs~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~~~~~~~~~ 81 (456)
T PRK08201 2 MQQVEAYLRERREAHLEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLEHVEIMETAGHPIVYADWLHAPGKPT 81 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHcCCCeEEEEecCCCCEEEEEecCCCCCCE
Confidence 367888899999999999999999999985 4678999999999999997 4432 3567999988543 4689
Q ss_pred EEEeeccccCCCcCCCCCcccc----ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccH
Q 023838 96 VVLRADMDALPLQELVEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGA 167 (276)
Q Consensus 96 i~l~~H~DtVp~~~~~~w~~~~----~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~ 167 (276)
|+|+||+||||+++...|+++| ++||++||||+ ||++++++.|++.|++.+..++++|.|++++|||.| .|+
T Consensus 82 lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~ 161 (456)
T PRK08201 82 VLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKVEGTLPVNVKFCIEGEEEIGSPNL 161 (456)
T ss_pred EEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccCCccH
Confidence 9999999999997766796553 46899999986 899999999999998766667889999999999987 688
Q ss_pred HHHHHcCC-CCCCcEEEEEeccCCCCcccEEeeccceeeeEEEEEEEEEccCC--CcCCCCC-CCcHHHHHHHHHHHHHH
Q 023838 168 FHMIKEGA-LGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGG--HAAMPHS-TIDPILTASSVILALQQ 243 (276)
Q Consensus 168 ~~~~~~~~-~~~~d~~i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~--Hs~~p~~-g~nAi~~~~~~i~~l~~ 243 (276)
..++++.. .-+.|++++.++....+.. . ....+++|..+++|+++|+++ |||.|.. +.||+..+++++.+|++
T Consensus 162 ~~~l~~~~~~~~~d~~ii~e~~~~~~~~-~--~i~~g~kG~~~~~l~v~G~~~~~Hs~~~~~~~~nAi~~~~~~l~~l~~ 238 (456)
T PRK08201 162 DSFVEEEKDKLAADVVLISDTTLLGPGK-P--AICYGLRGLAALEIDVRGAKGDLHSGLYGGAVPNALHALVQLLASLHD 238 (456)
T ss_pred HHHHHhhHHhccCCEEEEeCCCcCCCCC-E--EEEEecCCeEEEEEEEEeCCCCCccccccCcCCCHHHHHHHHHHhcCC
Confidence 88886531 1136888875432111111 1 134568899999999999998 9996654 47999999999999975
No 26
>PRK09133 hypothetical protein; Provisional
Probab=100.00 E-value=3.9e-37 Score=289.09 Aligned_cols=233 Identities=17% Similarity=0.219 Sum_probs=185.7
Q ss_pred HHHHHHHHHHhhhCCCCC--CcHHHHHHHHHHHHHhcCCCee---e---ccCCceEEEEEcCC-CCceEEEeeccccCCC
Q 023838 37 KDWLVSVRRQIHENPELL--FEEHNTSALIRRELDKLGIPYA---Y---PVAKTGIVAQIGSG-SRPVVVLRADMDALPL 107 (276)
Q Consensus 37 ~~~~~~~~~~l~~ips~s--~~e~~~~~~l~~~l~~~G~~~~---~---~~~~~nvia~~~~~-~~~~i~l~~H~DtVp~ 107 (276)
++++++++++|++|||++ ++|.++++||.++|+++|++++ . .++++|+++++++. ++|+|+|+||+||||+
T Consensus 36 ~~~~~~~l~~Lv~i~S~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~nli~~~~g~~~~~~lll~~H~DtVp~ 115 (472)
T PRK09133 36 QQAARDLYKELIEINTTASTGSTTPAAEAMAARLKAAGFADADIEVTGPYPRKGNLVARLRGTDPKKPILLLAHMDVVEA 115 (472)
T ss_pred HHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHcCCCceEEEeccCCCCceeEEEEecCCCCCCcEEEEeecccCCC
Confidence 578999999999999998 6789999999999999999753 2 12468999999653 4589999999999998
Q ss_pred cCCCCCcccc----ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC-cc-ccHHHHHHcCC-CC
Q 023838 108 QELVEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEE-GG-AGAFHMIKEGA-LG 177 (276)
Q Consensus 108 ~~~~~w~~~~----~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE-~g-~g~~~~~~~~~-~~ 177 (276)
++ ..|.++| ++||++||||+ ||++++++.+++.|++.+..++++|.|+|++||| +| .|+++++++.. .-
T Consensus 116 ~~-~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~g~~G~~~l~~~~~~~~ 194 (472)
T PRK09133 116 KR-EDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREGFKPKRDIILALTGDEEGTPMNGVAWLAENHRDLI 194 (472)
T ss_pred Ch-hcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccCccchHHHHHHHHhhcc
Confidence 64 3587654 45899999987 8999999999999998877789999999999999 66 79999987632 11
Q ss_pred CCcEEEEEeccC------CCCcccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHhHhh----
Q 023838 178 DSEAIFGMHIDV------GIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISR---- 247 (276)
Q Consensus 178 ~~d~~i~~~~~~------~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~---- 247 (276)
+.|++++ +... ++|+.. ....+++|..+++|+++|+++|||.|+ +.||+..++++|.+|+++..+
T Consensus 195 ~~~~~i~-e~~~~~~~~~gept~~---~i~~g~kG~~~~~i~v~G~~~Hss~p~-~~nAi~~l~~~l~~l~~~~~~~~~~ 269 (472)
T PRK09133 195 DAEFALN-EGGGGTLDEDGKPVLL---TVQAGEKTYADFRLEVTNPGGHSSRPT-KDNAIYRLAAALSRLAAYRFPVMLN 269 (472)
T ss_pred CeEEEEE-CCCccccCCCCCceEE---EeeeecceeEEEEEEEecCCCCCCCCC-CCChHHHHHHHHHHHhhCCCCCccC
Confidence 3677766 4322 334332 234578899999999999999999996 589999999999999864110
Q ss_pred --------------------------------------ccCC----CCCceEEEEEEEeeCCccccCCCCC
Q 023838 248 --------------------------------------EADP----LQSLVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 248 --------------------------------------~~~~----~~~~~i~~~~i~~g~~~~nvIP~~a 276 (276)
..++ ...+++|++.|+|| ...|+||++|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~gG-~~~NvVP~~a 339 (472)
T PRK09133 270 DVTRAYFKQSAAIETGPLAAAMRAFAANPADEAAIALLSADPSYNAMLRTTCVATMLEGG-HAENALPQRA 339 (472)
T ss_pred CccHHHHHHHHHhCCchHHHHHHHHhcCcchHHHHHHHhcCcchhheeeeeEEeeEEecC-CcCccCCCce
Confidence 0001 13579999999997 7999999986
No 27
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=3.2e-36 Score=272.84 Aligned_cols=223 Identities=17% Similarity=0.195 Sum_probs=180.9
Q ss_pred hHHHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhc-CCCeeeccCCceEEEEEcCCCCceEEEeeccccCCCcCCCCCc
Q 023838 36 DKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKL-GIPYAYPVAKTGIVAQIGSGSRPVVVLRADMDALPLQELVEWE 114 (276)
Q Consensus 36 ~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~-G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~w~ 114 (276)
..+++++++++|++|||+|++|.++++||+++|+++ |+++.+. .+|++++++++.+++|+|+||+||||+++ .++
T Consensus 5 ~~~~~~~~l~~li~ips~s~~e~~~~~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~i~l~~H~Dtvp~~~--~~~ 80 (352)
T PRK13007 5 LAADLAELTAALVDIPSVSGDEKALADAVEAALRALPHLEVIRH--GNSVVARTDLGRPSRVVLAGHLDTVPVAD--NLP 80 (352)
T ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhCcCceEEec--CCeEEEEccCCCCCeEEEEccccccCCCC--CCC
Confidence 346899999999999999999999999999999996 8877653 47899998644447899999999999864 233
Q ss_pred cccccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc---ccHHHHHHcC-CCCCCcEEEEEec
Q 023838 115 HKSKIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG---AGAFHMIKEG-ALGDSEAIFGMHI 187 (276)
Q Consensus 115 ~~~~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g---~g~~~~~~~~-~~~~~d~~i~~~~ 187 (276)
+. .+||++||||+ |+++|+++.|++.|. +++++|.|+|++|||.+ .|++.++++. .+.++|++++.+
T Consensus 81 ~~-~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~----~~~~~i~~~~~~~EE~~~~~~G~~~~~~~~~~~~~~d~~i~~e- 154 (352)
T PRK13007 81 SR-REGDRLYGCGASDMKSGLAVMLHLAATLA----EPAHDLTLVFYDCEEVEAEANGLGRLAREHPEWLAGDFAILLE- 154 (352)
T ss_pred cc-eeCCEEEccCcccccHHHHHHHHHHHHhh----ccCCCeEEEEEecccccCCcccHHHHHHhcccccCCCEEEEec-
Confidence 32 56899999998 799999999999983 36889999999999975 4888888653 233578988854
Q ss_pred cCCCCcccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHhHhhccCC---CCCceEEEEEEEe
Q 023838 188 DVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADP---LQSLVCLSLLLSI 264 (276)
Q Consensus 188 ~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~---~~~~~i~~~~i~~ 264 (276)
|++.. ...+++|..+++|+++|+++|||.|+.|+||+..+++++.+++++..+.... ....+++++.|+|
T Consensus 155 ----p~~~~---i~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~i~g 227 (352)
T PRK13007 155 ----PTDGV---IEAGCQGTLRVTVTFHGRRAHSARSWLGENAIHKAAPVLARLAAYEPREVVVDGLTYREGLNAVRISG 227 (352)
T ss_pred ----CCCCc---eEeeccceEEEEEEEEecccccCCCccCcCHHHHHHHHHHHHHHhcccccccCCCCccceeEeEeEec
Confidence 33321 1235779999999999999999999999999999999999998865432211 1145899999998
Q ss_pred eCCccccCCCCC
Q 023838 265 YSETCELLPLKA 276 (276)
Q Consensus 265 g~~~~nvIP~~a 276 (276)
| ...|+||++|
T Consensus 228 G-~~~nviP~~a 238 (352)
T PRK13007 228 G-VAGNVIPDEC 238 (352)
T ss_pred C-CcCccCCCeE
Confidence 7 7999999976
No 28
>PRK06446 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-36 Score=281.97 Aligned_cols=203 Identities=17% Similarity=0.212 Sum_probs=163.5
Q ss_pred HHHHHHHHHhhhCCCCCCc-H--HHHHHHHHHHHHhcCCCeeecc--CCceEEEEEcCCCCceEEEeeccccCCCcCCCC
Q 023838 38 DWLVSVRRQIHENPELLFE-E--HNTSALIRRELDKLGIPYAYPV--AKTGIVAQIGSGSRPVVVLRADMDALPLQELVE 112 (276)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~-e--~~~~~~l~~~l~~~G~~~~~~~--~~~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~ 112 (276)
+++++++++|++|||++++ | .++++||.++|+++|+++++.+ +++|++++++++++|+|+|+||+||||+++...
T Consensus 2 ~~~~~~l~eLV~i~S~s~~~~~~~~~a~~l~~~l~~~G~~ve~~~~~~~~~lia~~~~~~~~~vll~gH~DvVp~~~~~~ 81 (436)
T PRK06446 2 DEELYTLIEFLKKPSISATGEGIEETANYLKDTMEKLGIKANIERTKGHPVVYGEINVGAKKTLLIYNHYDVQPVDPLSE 81 (436)
T ss_pred hhHHHHHHHHhCCCCCCCCcHhHHHHHHHHHHHHHHCCCeEEEEecCCCCEEEEEecCCCCCEEEEEecccCCCCCcccc
Confidence 4688999999999999964 3 7999999999999999986532 578999999654468999999999999977677
Q ss_pred Ccccc----ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHHHHcCC-CCCCcEEE
Q 023838 113 WEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGA-LGDSEAIF 183 (276)
Q Consensus 113 w~~~~----~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~~~~~~-~~~~d~~i 183 (276)
|.++| ++||++||||+ ||++++++.|++.+++.. .++++|.|+|++|||.| .|+++++++.. .-++|+++
T Consensus 82 W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~-~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~vi 160 (436)
T PRK06446 82 WKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDKH-KLNVNVKFLYEGEEEIGSPNLEDFIEKNKNKLKADSVI 160 (436)
T ss_pred ccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHcC-CCCCCEEEEEEcccccCCHhHHHHHHHHHHHhCCCEEE
Confidence 87553 46899999987 899999999999887654 57889999999999987 68888886521 12478877
Q ss_pred EEeccCCCCcccEEeeccceeeeEEEEEEEEEc--cCCCcCCCCCCCcHHHHHHHHHHHHHHh
Q 023838 184 GMHIDVGIPTGSIASISGPHLAATSVFNVKVEG--RGGHAAMPHSTIDPILTASSVILALQQL 244 (276)
Q Consensus 184 ~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G--~~~Hs~~p~~g~nAi~~~~~~i~~l~~~ 244 (276)
+ ++....+.+... ...+++|..+++++++| +++|||.|+.|.||+..+++++.+|++.
T Consensus 161 ~-E~~~~~~~~~~~--i~~~~kG~~~~~l~v~G~~~~~Hss~p~~g~NAi~~~~~~l~~l~~~ 220 (436)
T PRK06446 161 M-EGAGLDPKGRPQ--IVLGVKGLLYVELVLRTGTKDLHSSNAPIVRNPAWDLVKLLSTLVDG 220 (436)
T ss_pred E-CCCCccCCCCeE--EEEecCeEEEEEEEEEeCCCCCCCCCCccCCCHHHHHHHHHHhhCCC
Confidence 4 322111233212 23467899999999998 9999999999999999999999999754
No 29
>PRK07907 hypothetical protein; Provisional
Probab=100.00 E-value=4.7e-36 Score=280.14 Aligned_cols=244 Identities=15% Similarity=0.161 Sum_probs=191.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhCCCCCCc------HHHHHHHHHHHHHhcCC-Ceeec--cCCceEEEEEcCC-CCceE
Q 023838 27 NQVMISAQQDKDWLVSVRRQIHENPELLFE------EHNTSALIRRELDKLGI-PYAYP--VAKTGIVAQIGSG-SRPVV 96 (276)
Q Consensus 27 ~~i~~~i~~~~~~~~~~~~~l~~ips~s~~------e~~~~~~l~~~l~~~G~-~~~~~--~~~~nvia~~~~~-~~~~i 96 (276)
+++.++++++++++++++++|++|||+|++ |.++++||.++|+++|+ ++++. ++++|++++++++ ++|+|
T Consensus 7 ~~~~~~i~~~~~~~~~ll~~LV~ipS~s~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~nl~a~~~~~~~~~~l 86 (449)
T PRK07907 7 DDLRARVAELLPRVRADLEELVRIPSVAADPFRREEVARSAEWVADLLREAGFDDVRVVSADGAPAVIGTRPAPPGAPTV 86 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhHHHHHHHHHHHHHHcCCceEEEEecCCCCEEEEEecCCCCCCEE
Confidence 358888999999999999999999999963 67899999999999998 67653 4678999999654 36899
Q ss_pred EEeeccccCCCcCCCCCcccc----ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHH
Q 023838 97 VLRADMDALPLQELVEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAF 168 (276)
Q Consensus 97 ~l~~H~DtVp~~~~~~w~~~~----~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~ 168 (276)
+|+||+||||+++..+|.++| ++||+|||||+ ||++++++.|++.| +..++++|.|++++|||.| .|++
T Consensus 87 ll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l---~~~~~~~i~~~~~~dEE~g~~g~~ 163 (449)
T PRK07907 87 LLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL---GGDLPVGVTVFVEGEEEMGSPSLE 163 (449)
T ss_pred EEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh---ccCCCCcEEEEEEcCcccCCccHH
Confidence 999999999998777787554 45899999997 89999999999998 3356789999999999987 7999
Q ss_pred HHHHcCC-CCCCcEEEEEeccCCCCcccEEeeccceeeeEEEEEEEEE--ccCCCcCC-CCCCCcHHHHHHHHHHHHHHh
Q 023838 169 HMIKEGA-LGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVE--GRGGHAAM-PHSTIDPILTASSVILALQQL 244 (276)
Q Consensus 169 ~~~~~~~-~~~~d~~i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~--G~~~Hs~~-p~~g~nAi~~~~~~i~~l~~~ 244 (276)
++++... ..+.|++++.++... ..+... ...+++|..+++++++ |+++|||. +..+.||+..+++++.+|++.
T Consensus 164 ~~l~~~~~~~~~d~~iv~E~~~~-~~~~p~--i~~~~kG~~~~~l~v~~~G~~~Hss~~~~~~~nAi~~~~~~l~~l~~~ 240 (449)
T PRK07907 164 RLLAEHPDLLAADVIVIADSGNW-SVGVPA--LTTSLRGNADVVVTVRTLEHAVHSGQFGGAAPDALTALVRLLATLHDE 240 (449)
T ss_pred HHHHhchHhhcCCEEEEecCCcC-CCCCeE--EEEecCCcEEEEEEEEECCCCCCCccccccCCCHHHHHHHHHHhhCCC
Confidence 9987631 124688888553211 011111 2345889999999998 89999996 466889999999999999764
Q ss_pred Hhhc-------cCC---------------------------------CCCceEEEEEEEee--CCccccCCCCC
Q 023838 245 ISRE-------ADP---------------------------------LQSLVCLSLLLSIY--SETCELLPLKA 276 (276)
Q Consensus 245 ~~~~-------~~~---------------------------------~~~~~i~~~~i~~g--~~~~nvIP~~a 276 (276)
..+. ..+ ...++++++.|++| +.+.|+||++|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~~~~~g~~~nvIP~~a 314 (449)
T PRK07907 241 DGNVAVDGLDATEPWLGVDYDEERFRADAGVLDGVELIGTGSVADRLWAKPAITVIGIDAPPVAGASNALPPSA 314 (449)
T ss_pred CCCEeCCCccCCCCcccccccHHHHHHHhhhhhcccccCCChHHHHhhhcCcEEEEeeecCCCCCCCCEecCce
Confidence 2110 000 12568999999963 25889999986
No 30
>PRK08737 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=1.2e-35 Score=270.21 Aligned_cols=216 Identities=16% Similarity=0.131 Sum_probs=173.3
Q ss_pred hHHHHHHHHHHhhhCCCCC----CcHHHHHHHHHHHHHhcCCCeeecc---CCceEEEEEcCCCCceEEEeeccccCCCc
Q 023838 36 DKDWLVSVRRQIHENPELL----FEEHNTSALIRRELDKLGIPYAYPV---AKTGIVAQIGSGSRPVVVLRADMDALPLQ 108 (276)
Q Consensus 36 ~~~~~~~~~~~l~~ips~s----~~e~~~~~~l~~~l~~~G~~~~~~~---~~~nvia~~~~~~~~~i~l~~H~DtVp~~ 108 (276)
..+++++++++|++|||.+ ++|.++++||.++|+ |+++++.+ ++.|+++.. + .|+|+|+||+||||++
T Consensus 4 ~~~~~~~~l~~Lv~i~s~~~~~~~~e~~~~~~l~~~l~--g~~~~~~~~~~~~~nli~~~-g--~~~lll~gH~DtVp~~ 78 (364)
T PRK08737 4 LLESTLDHLQALVSFDTRNPPRAITTGGIFDYLRAQLP--GFQVEVIDHGAGAVSLYAVR-G--TPKYLFNVHLDTVPDS 78 (364)
T ss_pred cHHHHHHHHHHHhCCCCcCCCCCCCcHHHHHHHHHHhC--CCEEEEecCCCCceEEEEEc-C--CCeEEEEeeeCCCCCC
Confidence 3457899999999999985 357899999999997 88876542 456999864 2 3789999999999986
Q ss_pred CCCCCcccc----ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc--ccHHHHHHcCCCCCC
Q 023838 109 ELVEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG--AGAFHMIKEGALGDS 179 (276)
Q Consensus 109 ~~~~w~~~~----~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g--~g~~~~~~~~~~~~~ 179 (276)
+ .|.++| +.||++||||+ ||++++++.|+.. ++++|.|+|++|||.| .|++.+++++. +.
T Consensus 79 ~--~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~-------~~~~v~~~~~~dEE~g~~~g~~~~~~~~~--~~ 147 (364)
T PRK08737 79 P--HWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA-------GDGDAAFLFSSDEEANDPRCVAAFLARGI--PY 147 (364)
T ss_pred C--CCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc-------cCCCEEEEEEcccccCchhhHHHHHHhCC--CC
Confidence 4 586553 46899999987 8999999988763 3578999999999987 48889988764 47
Q ss_pred cEEEEEeccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcCCC-CCCCcHHHHHHHHHHHHHHhHhhc----cCCCCC
Q 023838 180 EAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMP-HSTIDPILTASSVILALQQLISRE----ADPLQS 254 (276)
Q Consensus 180 d~~i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p-~~g~nAi~~~~~~i~~l~~~~~~~----~~~~~~ 254 (276)
|++++ ++|++.. ...+++|..+++|+++|+++|+|.| +.|+|||+.+++++.++.+....+ .++...
T Consensus 148 ~~~iv-----~Ept~~~---~~~~~kG~~~~~v~v~Gk~aHas~p~~~G~NAI~~~~~~l~~~~~~~~~~~~~~~~~~~~ 219 (364)
T PRK08737 148 EAVLV-----AEPTMSE---AVLAHRGISSVLMRFAGRAGHASGKQDPSASALHQAMRWGGQALDHVESLAHARFGGLTG 219 (364)
T ss_pred CEEEE-----cCCCCce---eEEecceeEEEEEEEEeeccccCCCcccCCCHHHHHHHHHHHHHHHHHhhhhhccCCCCC
Confidence 88887 5666542 2356889999999999999999988 589999999999998876543222 122345
Q ss_pred ceEEEEEEEeeCCccccCCCCC
Q 023838 255 LVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 255 ~~i~~~~i~~g~~~~nvIP~~a 276 (276)
.++|++.|+|| .+.|+||++|
T Consensus 220 ~t~~vg~i~GG-~~~NvVP~~a 240 (364)
T PRK08737 220 LRFNIGRVEGG-IKANMIAPAA 240 (364)
T ss_pred CceEEeeEecC-CCCCcCCCce
Confidence 69999999987 7999999986
No 31
>PRK07906 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=276.08 Aligned_cols=233 Identities=15% Similarity=0.256 Sum_probs=179.8
Q ss_pred HHHHHHHhhhCCCCC------CcHHHHHHHHHHHHHhcCCCeeecc---CCceEEEEEcCC-C-CceEEEeeccccCCCc
Q 023838 40 LVSVRRQIHENPELL------FEEHNTSALIRRELDKLGIPYAYPV---AKTGIVAQIGSG-S-RPVVVLRADMDALPLQ 108 (276)
Q Consensus 40 ~~~~~~~l~~ips~s------~~e~~~~~~l~~~l~~~G~~~~~~~---~~~nvia~~~~~-~-~~~i~l~~H~DtVp~~ 108 (276)
+++++++|++|||++ .+|.++++||.++|+++|+++++.+ +++|+++++++. + .|+|+|++|+||||++
T Consensus 1 ~~~ll~~Lv~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nv~~~~~g~~~~~~~lll~~H~DtVp~~ 80 (426)
T PRK07906 1 VVDLCSELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGLEPTYLESAPGRANVVARLPGADPSRPALLVHGHLDVVPAE 80 (426)
T ss_pred ChHHHHHHhcccccCCCCCCCchHHHHHHHHHHHHHhCCCCeEEeecCCCceEEEEEEeCCCCCCCcEEEEcccccCCCC
Confidence 368899999999998 6799999999999999999987642 568999999653 3 4899999999999986
Q ss_pred CCCCCcccc----ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc--ccHHHHHHcC--CCC
Q 023838 109 ELVEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG--AGAFHMIKEG--ALG 177 (276)
Q Consensus 109 ~~~~w~~~~----~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g--~g~~~~~~~~--~~~ 177 (276)
+ ..|.++| +.||++||||+ |++++++++|++.|++.+..++++|.|+|++|||.+ .|++.++++. .+.
T Consensus 81 ~-~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~~g~~~l~~~~~~~~~ 159 (426)
T PRK07906 81 A-ADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRPPRDLVFAFVADEEAGGTYGAHWLVDNHPELFE 159 (426)
T ss_pred c-ccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEecCcccchhhhHHHHHHHHHHhcc
Confidence 4 4687654 46899999997 899999999999999888788999999999999986 4899988753 222
Q ss_pred CCcEEEEEeccC---CCCcccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHhHhhc------
Q 023838 178 DSEAIFGMHIDV---GIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISRE------ 248 (276)
Q Consensus 178 ~~d~~i~~~~~~---~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~------ 248 (276)
..++++. ++.. ..+..........+++|..+++|+++|+++|+|.|+. .||+..+++++..|++...+.
T Consensus 160 ~~~~ii~-e~~~~~~~~~~~~~~~~i~~~~kG~~~~~v~v~G~~~Hss~p~~-~nAi~~~~~~l~~l~~~~~~~~~~~~~ 237 (426)
T PRK07906 160 GVTEAIS-EVGGFSLTVPGRDRLYLIETAEKGLAWMRLTARGRAGHGSMVND-DNAVTRLAEAVARIGRHRWPLVLTPTV 237 (426)
T ss_pred chheEEE-CCCceeeccCCCccEEEEEeccceEEEEEEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHhCCCCcccCHHH
Confidence 3334432 2110 0111101122345688999999999999999999864 999999999999997532100
Q ss_pred --------------cCCC-------------------CCceEEEEEEEeeCCccccCCCCC
Q 023838 249 --------------ADPL-------------------QSLVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 249 --------------~~~~-------------------~~~~i~~~~i~~g~~~~nvIP~~a 276 (276)
.++. ..+++|++.|+|| .+.|+||++|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~t~~~~~i~gG-~~~NviP~~~ 297 (426)
T PRK07906 238 RAFLDGVAELTGLEFDPDDPDALLAKLGPAARMVGATLRNTANPTMLKAG-YKVNVIPGTA 297 (426)
T ss_pred HHHHHHhhhhcCcccCcccHHHHHHHHhhcCcchhhhhcccccceeEecc-CccccCCCce
Confidence 0000 0369999999997 6899999986
No 32
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=1.5e-35 Score=272.35 Aligned_cols=229 Identities=19% Similarity=0.200 Sum_probs=182.9
Q ss_pred HhhHHHHHHHHHHhhhCCCCC---CcHHHHHHHHHHHHHhcCCCeeecc---C--------CceEEEEEcCCCCceEEEe
Q 023838 34 QQDKDWLVSVRRQIHENPELL---FEEHNTSALIRRELDKLGIPYAYPV---A--------KTGIVAQIGSGSRPVVVLR 99 (276)
Q Consensus 34 ~~~~~~~~~~~~~l~~ips~s---~~e~~~~~~l~~~l~~~G~~~~~~~---~--------~~nvia~~~~~~~~~i~l~ 99 (276)
+.+.+++++++++|++|||+| .+|.++++||.++|+++|+++++.. + ++|+++..+.++ |+|+|+
T Consensus 2 ~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ill~ 80 (394)
T PRK08651 2 EAMMFDIVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFSTEIIEVPNEYVKKHDGPRPNLIARRGSGN-PHLHFN 80 (394)
T ss_pred chhHHHHHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHHHcCCeEEEEecCccccccccCCcceEEEEeCCCC-ceEEEE
Confidence 446789999999999999998 6788999999999999999886532 1 245777664443 999999
Q ss_pred eccccCCCcCCCCCc---ccc-ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHHH
Q 023838 100 ADMDALPLQELVEWE---HKS-KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMI 171 (276)
Q Consensus 100 ~H~DtVp~~~~~~w~---~~~-~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~~ 171 (276)
||+||||+++.. |. |.+ .++|++||||+ |+++++++++++.|++.+ +++|.|+|++|||+| .|+++++
T Consensus 81 ~HlDtvp~~~~~-~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~~~v~~~~~~~EE~g~~G~~~~~ 156 (394)
T PRK08651 81 GHYDVVPPGEGW-SVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPAG---DGNIELAIVPDEETGGTGTGYLV 156 (394)
T ss_pred eeeeeecCCCCc-cccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhcC---CCCEEEEEecCccccchhHHHHH
Confidence 999999986532 44 444 36899999997 899999999999998764 799999999999987 6999999
Q ss_pred HcCCCCCCcEEEEEeccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHhHhhccC-
Q 023838 172 KEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREAD- 250 (276)
Q Consensus 172 ~~~~~~~~d~~i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~- 250 (276)
+++.+ +.|++++.+ |++.-. ...+++|..+++|+++|+++|++.|+.|.||+..+++++.+|++...+...
T Consensus 157 ~~~~~-~~d~~i~~~-----~~~~~~--i~~~~~G~~~~~i~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~ 228 (394)
T PRK08651 157 EEGKV-TPDYVIVGE-----PSGLDN--ICIGHRGLVWGVVKVYGKQAHASTPWLGINAFEAAAKIAERLKSSLSTIKSK 228 (394)
T ss_pred hccCC-CCCEEEEec-----CCCCCc--eEEecccEEEEEEEEEEeccccCCCccccCHHHHHHHHHHHHHHHHHhhhcc
Confidence 98655 368877643 333201 123567999999999999999999999999999999999999875432211
Q ss_pred -----C-CCCceEEEEE--EEeeCCccccCCCCC
Q 023838 251 -----P-LQSLVCLSLL--LSIYSETCELLPLKA 276 (276)
Q Consensus 251 -----~-~~~~~i~~~~--i~~g~~~~nvIP~~a 276 (276)
+ ....+++++. |+|| .+.|+||++|
T Consensus 229 ~~~~~~~~~~~~~~ig~~~i~gG-~~~nviP~~a 261 (394)
T PRK08651 229 YEYDDERGAKPTVTLGGPTVEGG-TKTNIVPGYC 261 (394)
T ss_pred ccccccccCCCceeecceeeeCC-CCCCccCCEE
Confidence 1 2356889999 9987 7999999975
No 33
>PRK09104 hypothetical protein; Validated
Probab=100.00 E-value=3.7e-35 Score=275.21 Aligned_cols=214 Identities=16% Similarity=0.191 Sum_probs=172.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhCCCCCCcH------HHHHHHHHHHHHhcCCCeeec--cCCceEEEEEcCC--CCceE
Q 023838 27 NQVMISAQQDKDWLVSVRRQIHENPELLFEE------HNTSALIRRELDKLGIPYAYP--VAKTGIVAQIGSG--SRPVV 96 (276)
Q Consensus 27 ~~i~~~i~~~~~~~~~~~~~l~~ips~s~~e------~~~~~~l~~~l~~~G~~~~~~--~~~~nvia~~~~~--~~~~i 96 (276)
.++.++++.+++++++++++|++|||+|+++ .++++||+++|+++|++++.. .+++|+++++++. .+|+|
T Consensus 6 ~~~~~~~~~~~~~~~~~L~~lv~i~Svs~~~~~~~~~~~~~~~l~~~l~~~G~~v~~~~~~~~~~l~a~~~g~~~~~~~l 85 (464)
T PRK09104 6 DPVLDHIDANLDASLERLFALLRIPSISTDPAYAADCRKAADWLVADLASLGFEASVRDTPGHPMVVAHHEGPTGDAPHV 85 (464)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHHHHHHHHHCCCeEEEEecCCCCEEEEEecCCCCCCCEE
Confidence 3588899999999999999999999999753 688999999999999998753 3568999999642 35999
Q ss_pred EEeeccccCCCcCCCCCcccc----ccCC-----eeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc
Q 023838 97 VLRADMDALPLQELVEWEHKS----KIDG-----KMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG 164 (276)
Q Consensus 97 ~l~~H~DtVp~~~~~~w~~~~----~~~g-----~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g 164 (276)
+|+||+||||+++...|.++| ..+| ++||||+ ||++++++.|++.|++.+.+++++|.|+|++|||.|
T Consensus 86 ll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g 165 (464)
T PRK09104 86 LFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAWKAVTGSLPVRVTILFEGEEESG 165 (464)
T ss_pred EEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccC
Confidence 999999999998767797654 2343 5999997 899999999999999877678899999999999987
Q ss_pred -ccHHHHHHcCC-CCCCcEEEEEeccCCCCcccEEeeccceeeeEEEEEEEEEc--cCCCcCC-CCCCCcHHHHHHHHHH
Q 023838 165 -AGAFHMIKEGA-LGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEG--RGGHAAM-PHSTIDPILTASSVIL 239 (276)
Q Consensus 165 -~g~~~~~~~~~-~~~~d~~i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G--~~~Hs~~-p~~g~nAi~~~~~~i~ 239 (276)
.|..+++.+.. ....|++|+.++....+. .. ....+++|..+++|+++| +++|||. |+.|.||+..+++++.
T Consensus 166 ~~g~~~~l~~~~~~~~~d~~iv~E~~~~~~~-~~--~i~~~~kG~~~~~l~v~g~~~~~Hss~~~~~g~nai~~~~~~l~ 242 (464)
T PRK09104 166 SPSLVPFLEANAEELKADVALVCDTGMWDRE-TP--AITTSLRGLVGEEVTITAADRDLHSGLFGGAAANPIRVLTRILA 242 (464)
T ss_pred CccHHHHHHhhHHhcCCCEEEEeCCCCCCCC-Ce--EEEeecCCeEEEEEEEEeCCCCccccccCCccCCHHHHHHHHHH
Confidence 67777776421 114688888542111011 11 123468899999999999 7899995 7889999999999999
Q ss_pred HHHH
Q 023838 240 ALQQ 243 (276)
Q Consensus 240 ~l~~ 243 (276)
+|++
T Consensus 243 ~l~~ 246 (464)
T PRK09104 243 GLHD 246 (464)
T ss_pred hccC
Confidence 9976
No 34
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=100.00 E-value=6.6e-35 Score=263.82 Aligned_cols=209 Identities=14% Similarity=0.134 Sum_probs=172.4
Q ss_pred HHHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeeccCCceEEEEEcCCCCceEEEeeccccCCCcCCCCCccc
Q 023838 37 KDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVVLRADMDALPLQELVEWEHK 116 (276)
Q Consensus 37 ~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~w~~~ 116 (276)
++++++++++|++|||++++|.++++||.++|+++|+++++.+ ..|.+. .+ .|+|+|+||+||||. | |.
T Consensus 9 ~~~~~~~l~~lv~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~~-~~~~~~--~g--~~~lll~gH~DtVp~-----~-~~ 77 (346)
T PRK00466 9 KQKAKELLLDLLSIYTPSGNETNATKFFEKISNELNLKLEILP-DSNSFI--LG--EGDILLASHVDTVPG-----Y-IE 77 (346)
T ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCeEEEec-CCCcEe--cC--CCeEEEEeccccCCC-----C-CC
Confidence 3688999999999999999999999999999999999988753 456553 22 378999999999994 2 33
Q ss_pred -cccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHHHHcCCCCCCcEEEEEeccCCC
Q 023838 117 -SKIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMHIDVGI 191 (276)
Q Consensus 117 -~~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~~~~~~~~~~d~~i~~~~~~~~ 191 (276)
..+||++||||+ ||++++++.|++.|++.+ .++.|+|++|||.| .|++++++++. +.|++++ ++
T Consensus 78 ~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~----~~i~~~~~~dEE~g~~G~~~l~~~~~--~~d~~i~-----~e 146 (346)
T PRK00466 78 PKIEGEVIYGRGAVDAKGPLISMIIAAWLLNEKG----IKVMVSGLADEESTSIGAKELVSKGF--NFKHIIV-----GE 146 (346)
T ss_pred ceeeCCEEEecCccccchHHHHHHHHHHHHHHcC----CCEEEEEEcCcccCCccHHHHHhcCC--CCCEEEE-----cC
Confidence 357899999997 899999999999998764 35899999999987 79999998863 4788887 45
Q ss_pred CcccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHhHhhccCCCCCceEEEEEEEeeCCcccc
Q 023838 192 PTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQSLVCLSLLLSIYSETCEL 271 (276)
Q Consensus 192 p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~~~i~~g~~~~nv 271 (276)
|++... ...+++|..+++|+++|+++|+|.|+ .||+..+++++.+|+++. .++..+++|++.|+|| ...|+
T Consensus 147 p~~~~~--i~~~~kG~~~~~i~v~G~~~Has~p~--~nAi~~~~~~l~~l~~~~----~~~~~~t~~~~~i~gG-~~~Nv 217 (346)
T PRK00466 147 PSNGTD--IVVEYRGSIQLDIMCEGTPEHSSSAK--SNLIVDISKKIIEVYKQP----ENYDKPSIVPTIIRAG-ESYNV 217 (346)
T ss_pred CCCCCc--eEEEeeEEEEEEEEEEeeccccCCCC--cCHHHHHHHHHHHHHhcc----ccCCCCcceeeEEecC-CcCcc
Confidence 665321 23458899999999999999999886 499999999999987642 2234678999999987 79999
Q ss_pred CCCCC
Q 023838 272 LPLKA 276 (276)
Q Consensus 272 IP~~a 276 (276)
||++|
T Consensus 218 vP~~a 222 (346)
T PRK00466 218 TPAKL 222 (346)
T ss_pred cCCce
Confidence 99986
No 35
>PRK08262 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-35 Score=279.00 Aligned_cols=236 Identities=17% Similarity=0.188 Sum_probs=181.1
Q ss_pred HHhhHHHHHHHHHHhhhCCCCCCcHH---------HHHHHHHHHHHhcCCCeeecc-CCceEEEEEcCC-CC-ceEEEee
Q 023838 33 AQQDKDWLVSVRRQIHENPELLFEEH---------NTSALIRRELDKLGIPYAYPV-AKTGIVAQIGSG-SR-PVVVLRA 100 (276)
Q Consensus 33 i~~~~~~~~~~~~~l~~ips~s~~e~---------~~~~~l~~~l~~~G~~~~~~~-~~~nvia~~~~~-~~-~~i~l~~ 100 (276)
+....+++++++++|++|||+|++|. ++++||.++|+.+|+.++... +..|+++.+.+. ++ |+|+|+|
T Consensus 39 ~~~~~~~~v~~L~~lv~i~S~s~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~~~~~~~~vv~~~~g~~~~~~~ill~g 118 (486)
T PRK08262 39 VAVDEDAAAERLSEAIRFRTISNRDRAEDDAAAFDALHAHLEESYPAVHAALEREVVGGHSLLYTWKGSDPSLKPIVLMA 118 (486)
T ss_pred CcCCHHHHHHHHHHhcccceeccCCCCcccHHHHHHHHHHHHHhChhhhceeEEEEECCccEEEEEECCCCCCCeEEEEC
Confidence 44456899999999999999998652 488999999999998765421 335788887543 33 8999999
Q ss_pred ccccCCCcCC--CCCc---ccc-ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHH
Q 023838 101 DMDALPLQEL--VEWE---HKS-KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHM 170 (276)
Q Consensus 101 H~DtVp~~~~--~~w~---~~~-~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~ 170 (276)
|+||||+++. ..|. |.+ ++||++||||+ ||++++++.|++.|++.+.+++++|.|+|++|||.| .|++++
T Consensus 119 H~DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~~~~l~~~I~llf~~dEE~g~~G~~~l 198 (486)
T PRK08262 119 HQDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLAQGFQPRRTIYLAFGHDEEVGGLGARAI 198 (486)
T ss_pred cccccCCCCCCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHHcCCCCCCeEEEEEecccccCCcCHHHH
Confidence 9999998653 4695 444 46899999994 999999999999999887778999999999999987 688888
Q ss_pred HHc----CCCCCCcEEE------EEec--cCCCCcccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHH
Q 023838 171 IKE----GALGDSEAIF------GMHI--DVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVI 238 (276)
Q Consensus 171 ~~~----~~~~~~d~~i------~~~~--~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i 238 (276)
++. +. +.|+++ +.+. ..++|++. .+.+++|..+++|+++|+++|||.|+. .||+..+++++
T Consensus 199 ~~~l~~~~~--~~~~~~~~~~~i~~~~~~~~~~p~~~----i~~~~kG~~~~~i~v~G~~~Hss~p~~-~nai~~l~~~l 271 (486)
T PRK08262 199 AELLKERGV--RLAFVLDEGGAITEGVLPGVKKPVAL----IGVAEKGYATLELTARATGGHSSMPPR-QTAIGRLARAL 271 (486)
T ss_pred HHHHHHhcC--CEEEEEeCCceecccccCCCCceEEe----eEEeeeeeEEEEEEEecCCCCCCCCCC-CCHHHHHHHHH
Confidence 753 21 234432 1111 11334432 345678999999999999999999998 99999999999
Q ss_pred HHHHHhHhh----------------c----------------------------cCCCCCceEEEEEEEeeCCccccCCC
Q 023838 239 LALQQLISR----------------E----------------------------ADPLQSLVCLSLLLSIYSETCELLPL 274 (276)
Q Consensus 239 ~~l~~~~~~----------------~----------------------------~~~~~~~~i~~~~i~~g~~~~nvIP~ 274 (276)
.+|++...+ . ..+...+++|++.|+|| ...|+||+
T Consensus 272 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~I~gG-~~~NvIP~ 350 (486)
T PRK08262 272 TRLEDNPLPMRLRGPVAEMFDTLAPEMSFAQRVVLANLWLFEPLLLRVLAKSPETAAMLRTTTAPTMLKGS-PKDNVLPQ 350 (486)
T ss_pred HHHhhCCCCCccChHHHHHHHHHHHhcCHHHHHHhhcccchhhHHHHHHhcCCccceeEEeeeeeeEEecC-CccccCCC
Confidence 999863100 0 00123579999999987 68999999
Q ss_pred CC
Q 023838 275 KA 276 (276)
Q Consensus 275 ~a 276 (276)
+|
T Consensus 351 ~a 352 (486)
T PRK08262 351 RA 352 (486)
T ss_pred cc
Confidence 86
No 36
>PRK08652 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=9.5e-35 Score=262.53 Aligned_cols=215 Identities=17% Similarity=0.111 Sum_probs=173.4
Q ss_pred HHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeeccC--CceEEEEEcCCCCceEEEeeccccCCCcCCCCCcc
Q 023838 38 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVA--KTGIVAQIGSGSRPVVVLRADMDALPLQELVEWEH 115 (276)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~--~~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~w~~ 115 (276)
+++++++++|++|||+|++|.++++||.++|+++|++++.... ..|+++ +++|+|+|+||+||||+..+ +
T Consensus 2 ~~~~~~~~~lv~ips~s~~e~~~~~~l~~~l~~~G~~v~~~~~~~~~~~~~----~~~~~i~l~~H~D~vp~~~~---~- 73 (347)
T PRK08652 2 ERAKELLKQLVKIPSPSGQEDEIALHIMEFLESLGYDVHIESDGEVINIVV----NSKAELFVEVHYDTVPVRAE---F- 73 (347)
T ss_pred hhHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCEEEEEecCceeEEEc----CCCCEEEEEccccccCCCCC---C-
Confidence 5789999999999999999999999999999999999876432 356665 23589999999999997432 1
Q ss_pred ccccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHHHHcCCCCCCcEEEEEeccCCC
Q 023838 116 KSKIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMHIDVGI 191 (276)
Q Consensus 116 ~~~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~~~~~~~~~~d~~i~~~~~~~~ 191 (276)
..+||++||||+ |+++++++.|++.|.+.. .+++|.|+|++|||.| .|+++++++. +.|++++.+
T Consensus 74 -~~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~~--~~~~v~~~~~~dEE~g~~G~~~~~~~~---~~d~~i~~e----- 142 (347)
T PRK08652 74 -FVDGVYVYGTGACDAKGGVAAILLALEELGKEF--EDLNVGIAFVSDEEEGGRGSALFAERY---RPKMAIVLE----- 142 (347)
T ss_pred -EEECCEEEeccchhhhHHHHHHHHHHHHHhhcc--cCCCEEEEEecCcccCChhHHHHHHhc---CCCEEEEec-----
Confidence 145899999987 899999999999997543 4679999999999976 7999998762 357888743
Q ss_pred CcccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHhHhhccCCCCCceEEEEEEEeeCCcccc
Q 023838 192 PTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQSLVCLSLLLSIYSETCEL 271 (276)
Q Consensus 192 p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~~~i~~g~~~~nv 271 (276)
|++. .+..+++|..+++|+++|+++|++.|+.|.||+..+++++..|+++.......+ ..+++++.|+|| ...|+
T Consensus 143 p~~~---~i~~~~~g~~~~~i~~~G~~~H~s~p~~g~nAi~~~a~~i~~l~~~~~~~~~~~-~~~~~~~~i~gg-~~~nv 217 (347)
T PRK08652 143 PTDL---KVAIAHYGNLEAYVEVKGKPSHGACPESGVNAIEKAFEMLEKLKELLKALGKYF-DPHIGIQEIIGG-SPEYS 217 (347)
T ss_pred CCCC---ceeeecccEEEEEEEEEeeecccCCCCcCcCHHHHHHHHHHHHHHHHHhhhccc-CCCCcceeeecC-CCCCc
Confidence 3322 123457899999999999999999999999999999999999988754322112 235778889987 79999
Q ss_pred CCCCC
Q 023838 272 LPLKA 276 (276)
Q Consensus 272 IP~~a 276 (276)
||++|
T Consensus 218 iP~~~ 222 (347)
T PRK08652 218 IPALC 222 (347)
T ss_pred cCCcE
Confidence 99975
No 37
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=100.00 E-value=1.8e-34 Score=261.20 Aligned_cols=216 Identities=15% Similarity=0.145 Sum_probs=174.4
Q ss_pred HHHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeeccCCceEEEEEcCCCCceEEEeeccccCCCcCCCCCccc
Q 023838 37 KDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVVLRADMDALPLQELVEWEHK 116 (276)
Q Consensus 37 ~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~w~~~ 116 (276)
.+++++++++|++|||++++|.++++|+.++|+++|++++.+ ...|++++++++ +|+|+|+||+||||... ++.
T Consensus 5 ~~~~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~-~~~n~i~~~~~~-~~~l~~~~H~DtVp~~~----p~~ 78 (348)
T PRK04443 5 ALEARELLKGLVEIPSPSGEEAAAAEFLVEFMESHGREAWVD-EAGNARGPAGDG-PPLVLLLGHIDTVPGDI----PVR 78 (348)
T ss_pred hHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHcCCEEEEc-CCCcEEEEcCCC-CCEEEEEeeccccCCCC----CcE
Confidence 367899999999999999999999999999999999998764 457999998543 48999999999999532 332
Q ss_pred cccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHHHHcCCCCCCcEEEEEeccCCCC
Q 023838 117 SKIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMHIDVGIP 192 (276)
Q Consensus 117 ~~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~~~~~~~~~~d~~i~~~~~~~~p 192 (276)
++||++||||+ ||++++++.|++.| +.+++++|.|++++|||.| .|...++.++. .+|++++ ++|
T Consensus 79 -~~~g~iyGrG~~D~Kg~~aa~l~A~~~l---~~~~~~~i~~~~~~dEE~g~~~~~~~l~~~~--~~d~~iv-----~Ep 147 (348)
T PRK04443 79 -VEDGVLWGRGSVDAKGPLAAFAAAAARL---EALVRARVSFVGAVEEEAPSSGGARLVADRE--RPDAVII-----GEP 147 (348)
T ss_pred -eeCCeEEeecccccccHHHHHHHHHHHh---cccCCCCEEEEEEcccccCChhHHHHHHhcc--CCCEEEE-----eCC
Confidence 46899999996 89999999999998 3468899999999999987 55666666553 5789887 445
Q ss_pred cccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHhHhh---ccCCCCCceEEEEEEEeeCCcc
Q 023838 193 TGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISR---EADPLQSLVCLSLLLSIYSETC 269 (276)
Q Consensus 193 ~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~---~~~~~~~~~i~~~~i~~g~~~~ 269 (276)
++... ...+++|..+++|+++|+++|||.| |.||++.+++++..|+++... ....+...++|++.|+. +.
T Consensus 148 t~~~~--i~~~~kG~~~~~l~~~G~~~Hss~~--g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~i~~---~~ 220 (348)
T PRK04443 148 SGWDG--ITLGYKGRLLVTYVATSESFHSAGP--EPNAAEDAIEWWLAVEAWFEANDGRERVFDQVTPKLVDFDS---SS 220 (348)
T ss_pred CCccc--eeeecccEEEEEEEEEeCCCccCCC--CCCHHHHHHHHHHHHHHHHhcCccccccccccceeeeEEec---CC
Confidence 54211 2346789999999999999999987 789999999999999886541 11124567889999983 56
Q ss_pred ccCCCCC
Q 023838 270 ELLPLKA 276 (276)
Q Consensus 270 nvIP~~a 276 (276)
|+||++|
T Consensus 221 n~iP~~~ 227 (348)
T PRK04443 221 DGLTVEA 227 (348)
T ss_pred CCCCceE
Confidence 9999875
No 38
>PRK07079 hypothetical protein; Provisional
Probab=100.00 E-value=7.9e-34 Score=266.52 Aligned_cols=248 Identities=13% Similarity=0.059 Sum_probs=183.2
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHhhhCCCCCCc---HHHHHHHHH----HHHHhcCCCeeec-----cCCceEEEEEc
Q 023838 22 DEILTNQVMISAQQDKDWLVSVRRQIHENPELLFE---EHNTSALIR----RELDKLGIPYAYP-----VAKTGIVAQIG 89 (276)
Q Consensus 22 ~~~~~~~i~~~i~~~~~~~~~~~~~l~~ips~s~~---e~~~~~~l~----~~l~~~G~~~~~~-----~~~~nvia~~~ 89 (276)
...+.+++.++++. +++++++++|++|||+|++ +.++++|+. ++|+++|+++++. .+++|+++.++
T Consensus 3 ~~~~~~~~~~~~~~--~~~~~~L~~LV~ipSvs~~~~~~~~~~~~l~~~~~~~l~~~G~~~~~~~~~~~~~~~~vva~~~ 80 (469)
T PRK07079 3 REAAIARAAAYFDS--GAFFADLARRVAYRTESQNPDRAPALRAYLTDEIAPALAALGFTCRIVDNPVAGGGPFLIAERI 80 (469)
T ss_pred HHHHHHHHHHhhcc--HHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCEEEEEeC
Confidence 44556677777775 5899999999999999963 456777764 5899999998753 24679999986
Q ss_pred CC-CCceEEEeeccccCCCcCCCCCc-----ccc-ccCCeeecCCc---cHHHHHHHHHHHHHHhc-cCCCCceEEEEEe
Q 023838 90 SG-SRPVVVLRADMDALPLQELVEWE-----HKS-KIDGKMHACGH---DVHTTMLLGAAKLIHQR-KDKLKGTVRILFQ 158 (276)
Q Consensus 90 ~~-~~~~i~l~~H~DtVp~~~~~~w~-----~~~-~~~g~l~g~G~---kg~~a~~l~a~~~l~~~-~~~~~~~v~~~~~ 158 (276)
++ ++|+|+|+||+||||+++ ..|. |.+ ++||++||||+ ||++++++.|++.|.+. +..++++|.|+|+
T Consensus 81 ~~~~~~~lll~gH~DvVp~~~-~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~~~~~~~~~~i~~~~~ 159 (469)
T PRK07079 81 EDDALPTVLIYGHGDVVRGYD-EQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLAARGGRLGFNVKLLIE 159 (469)
T ss_pred CCCCCCEEEEEcccCCCCCCh-HHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEE
Confidence 53 458999999999999753 4575 333 56899999987 89999999999998754 4678899999999
Q ss_pred cCCCcc-ccHHHHHHcCC-CCCCcEEEEEeccCCCCcccEEeeccceeeeEEEEEEEEEcc--CCCcCCCCCC--CcHHH
Q 023838 159 PAEEGG-AGAFHMIKEGA-LGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGR--GGHAAMPHST--IDPIL 232 (276)
Q Consensus 159 ~dEE~g-~g~~~~~~~~~-~~~~d~~i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~--~~Hs~~p~~g--~nAi~ 232 (276)
+|||+| .|+++++++.. ..+.|++|+.++....+.. . ....+++|..+++|+++|+ +.||+ ++.| .||+.
T Consensus 160 ~dEE~g~~G~~~l~~~~~~~~~~d~~iv~e~~~~~~~~-~--~i~~g~kG~~~~~v~v~G~~~~~hs~-~~~g~~~nai~ 235 (469)
T PRK07079 160 MGEEIGSPGLAEVCRQHREALAADVLIASDGPRLSAER-P--TLFLGSRGAVNFRLRVNLRDGAHHSG-NWGGLLRNPGT 235 (469)
T ss_pred CccccCCccHHHHHHHhHHhcCCCEEEEeCCCccCCCC-e--EEEEecceEEEEEEEEeeCCCCCCCC-ccccccCCHHH
Confidence 999998 79999998642 1247888885432111111 1 1234688999999999998 44666 4444 69999
Q ss_pred HHHHHHHHHHHhHhhc----------------------cC----------------------CCCCceEEEEEEEeeC--
Q 023838 233 TASSVILALQQLISRE----------------------AD----------------------PLQSLVCLSLLLSIYS-- 266 (276)
Q Consensus 233 ~~~~~i~~l~~~~~~~----------------------~~----------------------~~~~~~i~~~~i~~g~-- 266 (276)
.++++|.++.+...+. .. .+..+++|++.|+||.
T Consensus 236 ~l~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~nv~~i~gG~~~ 315 (469)
T PRK07079 236 VLAHAIASLVDARGRIQVPGLRPPPLPAAVRAALADITVGGGPGDPAIDPDWGEPGLTPAERVFGWNTLEVLAFKTGNPD 315 (469)
T ss_pred HHHHHHHHhCCCCCCEecCCccCCCCCHHHHHHHHhCCCchhhhccCcccccCCCCcCHHHHHhhCCceEEEeeecCCCC
Confidence 9999999985421000 00 0123589999999874
Q ss_pred CccccCCCCC
Q 023838 267 ETCELLPLKA 276 (276)
Q Consensus 267 ~~~nvIP~~a 276 (276)
...|+||++|
T Consensus 316 ~~~NvVP~~a 325 (469)
T PRK07079 316 APVNAIPGSA 325 (469)
T ss_pred CcceEecCce
Confidence 2589999986
No 39
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=100.00 E-value=1.4e-33 Score=256.33 Aligned_cols=219 Identities=17% Similarity=0.198 Sum_probs=176.1
Q ss_pred HHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeecc------CCceEEEEEcCC-CCceEEEeeccccCCCcCCCC
Q 023838 40 LVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPV------AKTGIVAQIGSG-SRPVVVLRADMDALPLQELVE 112 (276)
Q Consensus 40 ~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~------~~~nvia~~~~~-~~~~i~l~~H~DtVp~~~~~~ 112 (276)
+++++++|++|||++++|.++++||.++|+++|+++++.. +++|+++.+++. ++|+|+|+||+||||+++ .
T Consensus 2 ~~~~~~~l~~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~l~~H~D~V~~~~--~ 79 (361)
T TIGR01883 2 LKKYFLELIQIDSESGKEKAILTYLKKQITKLGIPVSLDEVPAEVSNDNNLIARLPGTVKFDTIFFCGHMDTVPPGA--G 79 (361)
T ss_pred hHHHHHHHeecCCCCCcHHHHHHHHHHHHHHcCCEEEEeccccccCCCceEEEEEeCCCCCCcEEEEeeccccCCCC--C
Confidence 6789999999999999999999999999999999987642 378999999654 358999999999999754 2
Q ss_pred CccccccCCeeecCCc-------cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHHHHcCCCCCCcEEEE
Q 023838 113 WEHKSKIDGKMHACGH-------DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFG 184 (276)
Q Consensus 113 w~~~~~~~g~l~g~G~-------kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~~~~~~~~~~d~~i~ 184 (276)
|. ..+++|++||||+ |+++++++.+++.|++.+ .++++|.|+|++|||.| .|++.+++.+. ..++.++
T Consensus 80 ~~-~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~-~~~~~v~~~~~~~EE~g~~G~~~~~~~~~--~~~~~~~ 155 (361)
T TIGR01883 80 PE-PVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE-TPHGTIEFIFTVKEELGLIGMRLFDESKI--TAAYGYC 155 (361)
T ss_pred CC-ceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccCchhHhHhChhhc--CcceeEE
Confidence 32 1246789999884 599999999999998765 47889999999999988 69988876532 3566666
Q ss_pred EeccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcC-CCCCCCcHHHHHHHHHHHHHHhHhhccCCCCCceEEEEEEE
Q 023838 185 MHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAA-MPHSTIDPILTASSVILALQQLISREADPLQSLVCLSLLLS 263 (276)
Q Consensus 185 ~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~-~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~~~i~ 263 (276)
.++ +.+.+.+. .+++|..+++++++|+++|++ .|+.|+||+..+++++..|+... .+ ...+++++.|+
T Consensus 156 ~~~--~~~~~~i~----~~~~g~~~~~i~~~G~~~Ha~~~p~~g~nAi~~~~~~i~~l~~~~---~~--~~~~~~i~~i~ 224 (361)
T TIGR01883 156 LDA--PGEVGNIQ----LAAPTQVKVDATIAGKDAHAGLVPEDGISAISVARMAIHAMRLGR---ID--EETTANIGSFS 224 (361)
T ss_pred EeC--CCCcceEE----ecCCceEEEEEEEEeeecCCCCCcccCcCHHHHHHHHHHhccccC---CC--Cccccccceee
Confidence 432 22223332 245799999999999999986 79999999999999999886421 11 24678999999
Q ss_pred eeCCccccCCCCC
Q 023838 264 IYSETCELLPLKA 276 (276)
Q Consensus 264 ~g~~~~nvIP~~a 276 (276)
|| ...|+||++|
T Consensus 225 gG-~~~nvVP~~~ 236 (361)
T TIGR01883 225 GG-VNTNIVQDEQ 236 (361)
T ss_pred cC-CccCccCCce
Confidence 87 7999999985
No 40
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-33 Score=256.48 Aligned_cols=239 Identities=22% Similarity=0.291 Sum_probs=184.3
Q ss_pred HHHHhhHHHHHHHHHHhhhCCCCC-CcHHHHHHHHHHHHHhcCCCeeecc-C----CceEEEEEcCCC-CceEEEeeccc
Q 023838 31 ISAQQDKDWLVSVRRQIHENPELL-FEEHNTSALIRRELDKLGIPYAYPV-A----KTGIVAQIGSGS-RPVVVLRADMD 103 (276)
Q Consensus 31 ~~i~~~~~~~~~~~~~l~~ips~s-~~e~~~~~~l~~~l~~~G~~~~~~~-~----~~nvia~~~~~~-~~~i~l~~H~D 103 (276)
......++++++++++|+++||++ ..+.++++|+.++|+++|+.++... . .+|+++++.+++ .|+|+|+||+|
T Consensus 6 ~~~~~~~~~~~~~l~~lv~~~s~s~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~n~~~~~~~~~~~~~l~l~~H~D 85 (409)
T COG0624 6 EVSLDLLDDILELLKELVRIPSVSAGEEAEAAELLAEWLEELGFEVEEDEVGPGPGRPNLVARLGGGDGGPTLLLGGHLD 85 (409)
T ss_pred HHHHHhhHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHcCCceEEeecCCCCCceEEEEEecCCCCCCeEEEecccc
Confidence 344555678889999999999999 8899999999999999999876532 2 459999997764 39999999999
Q ss_pred cCCCcCCCCCcccc----ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHHHHcCC
Q 023838 104 ALPLQELVEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGA 175 (276)
Q Consensus 104 tVp~~~~~~w~~~~----~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~~~~~~ 175 (276)
|||+++...|.++| .+||++||||+ ||++++++.|++.+.+.+..++++|.+++++|||++ .+...++.++.
T Consensus 86 vVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~~~~~~ 165 (409)
T COG0624 86 VVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAAGGELPGDVRLLFTADEESGGAGGKAYLEEGE 165 (409)
T ss_pred ccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCeEEEEEEEeccccCCcchHHHHHhcc
Confidence 99998877896543 45789999997 899999999999999987788999999999999998 67777777653
Q ss_pred ---CCCCcEEEEEeccCCC-CcccEEeeccceeeeEEEEEEEEEccCCCcCC--CCCCCc----HHHHHHHHHHHHHHhH
Q 023838 176 ---LGDSEAIFGMHIDVGI-PTGSIASISGPHLAATSVFNVKVEGRGGHAAM--PHSTID----PILTASSVILALQQLI 245 (276)
Q Consensus 176 ---~~~~d~~i~~~~~~~~-p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~--p~~g~n----Ai~~~~~~i~~l~~~~ 245 (276)
...+|+++..++ ..+ ..+..... +++|..+++++++|+++|+|. |+.+.| |+..+.+++..+.++.
T Consensus 166 ~~~~~~~d~~i~~E~-~~~~~~~~~~~~---~~kG~~~~~v~v~G~~~Has~~~p~~~~n~i~~a~~~~~~~~~~~~~~~ 241 (409)
T COG0624 166 EALGIRPDYEIVGEP-TLESEGGDIIVV---GHKGSLWLEVTVKGKAGHASTTPPDLGRNPIHAAIEALAELIEELGDLA 241 (409)
T ss_pred hhhccCCCEEEeCCC-CCcccCCCeEEE---cceeEEEEEEEEEeecccccccCCcccccHHHHHHHHHHHHHHHhcccc
Confidence 235788887442 111 12322222 578999999999999999997 999999 5555555555544332
Q ss_pred hhccCCCC-CceEEEEEEEeeCC-------ccccCCCCC
Q 023838 246 SREADPLQ-SLVCLSLLLSIYSE-------TCELLPLKA 276 (276)
Q Consensus 246 ~~~~~~~~-~~~i~~~~i~~g~~-------~~nvIP~~a 276 (276)
.+. +. +.+++++.+.++.. ..|+||++|
T Consensus 242 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~nviP~~~ 277 (409)
T COG0624 242 GEG---FDGPLGLNVGLILAGPGASVNGGDKVNVIPGEA 277 (409)
T ss_pred ccc---ccCCccccccccccCCcccccCCccCceecceE
Confidence 222 23 57788887776632 259999975
No 41
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=100.00 E-value=8.6e-33 Score=258.98 Aligned_cols=230 Identities=14% Similarity=0.097 Sum_probs=171.5
Q ss_pred HHHHHHhhHHHHHHHHHHhhhCCCCCC------------cHHHHHHHHHHHHHhcCCCeeeccCCceEEEEEc-CCCCce
Q 023838 29 VMISAQQDKDWLVSVRRQIHENPELLF------------EEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIG-SGSRPV 95 (276)
Q Consensus 29 i~~~i~~~~~~~~~~~~~l~~ips~s~------------~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~-~~~~~~ 95 (276)
+.++++++++++++++++|++|||++. ++.++++++.++|+++||+++..+ |.++.+. ++++|+
T Consensus 4 ~~~~i~~~~~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~---~~~~~~~~~~~~~~ 80 (466)
T TIGR01886 4 FKEEVEARKDALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDGFTTKNFD---NYAGHVEYGAGDER 80 (466)
T ss_pred HHHHHHHhHHHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCCCeEEEec---CCceeEEecCCCCE
Confidence 567788999999999999999999964 356789999999999999987643 3333332 233589
Q ss_pred EEEeeccccCCCcCCCCCcccc----ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccH
Q 023838 96 VVLRADMDALPLQELVEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGA 167 (276)
Q Consensus 96 i~l~~H~DtVp~~~~~~w~~~~----~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~ 167 (276)
|+|+||+||||+++ .|.++| ++||++||||+ ||++++++.|+++|++.+..++++|.|++++|||+| .|+
T Consensus 81 l~~~gH~DvVp~~~--~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~ 158 (466)
T TIGR01886 81 LGIIGHMDVVPAGE--GWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKELGLPPSKKIRFVVGTNEETGWVDM 158 (466)
T ss_pred EEEEeecccCCCCC--CCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCCCEEEEEECccccCcccH
Confidence 99999999999974 486543 46899999997 899999999999999988889999999999999998 799
Q ss_pred HHHHHcCCCCCCcEEEEEeccC----CCCcccE---------------------------------Eee-----------
Q 023838 168 FHMIKEGALGDSEAIFGMHIDV----GIPTGSI---------------------------------ASI----------- 199 (276)
Q Consensus 168 ~~~~~~~~~~~~d~~i~~~~~~----~~p~~~~---------------------------------~~~----------- 199 (276)
+++++++. ..|++++.+.+. +++.... .+.
T Consensus 159 ~~~~~~~~--~~d~~~~~d~~~~~~~ge~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~i~~~~~~~~~~~~ 236 (466)
T TIGR01886 159 DYYFKHEE--TPDFGFSPDAEFPIINGEKGNFTLELSFKGDNKGDYVLDSFKAGLAENMVPQVARAVISGPDAEALKAAY 236 (466)
T ss_pred HHHHhcCc--CCCEEEECCCCceeEEEecceEEEEEEEecCCCCceeEEEEEcCCcCCccCCeeEEEEecCCHHHHHHHH
Confidence 99998764 256654422100 1111110 000
Q ss_pred -ccceeeeEE---------EEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHH----------HHhHh---h---------
Q 023838 200 -SGPHLAATS---------VFNVKVEGRGGHAAMPHSTIDPILTASSVILAL----------QQLIS---R--------- 247 (276)
Q Consensus 200 -~~~~~~G~~---------~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l----------~~~~~---~--------- 247 (276)
....++|.. +++|+++|+++|||.|+.|+|||..|++++..+ +.+.. .
T Consensus 237 ~~~~~~kg~~~~~~~~~~~~~~i~v~G~~aH~s~P~~G~NAi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 316 (466)
T TIGR01886 237 ESFLADKASLDGSFEINDESATIVLIGKGAHGAAPQVGINSATFLALFLNQYAFAGGAKNFIHFLAEVEHEDFYGEKLGI 316 (466)
T ss_pred HHHHhhccCceEEEEEeCCEEEEEEEeeEcccCCCCCCcCHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCcccCCC
Confidence 001233332 799999999999999999999999999988873 22211 0
Q ss_pred -ccCC-CCCceEEEEEEEee
Q 023838 248 -EADP-LQSLVCLSLLLSIY 265 (276)
Q Consensus 248 -~~~~-~~~~~i~~~~i~~g 265 (276)
..++ ...+++|+|.|++|
T Consensus 317 ~~~~~~~g~~S~nvgvI~gG 336 (466)
T TIGR01886 317 AFHDELMGDLAMNAGMFDFD 336 (466)
T ss_pred cccccCcCceEEEeEEEEEe
Confidence 0122 45789999999997
No 42
>PRK07205 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-32 Score=255.88 Aligned_cols=209 Identities=16% Similarity=0.187 Sum_probs=154.6
Q ss_pred HhhHHHHHHHHHHhhhCCCCCCcH----------HHHHHHHHHHHHhcCCCeeeccCCceEEEEEcCCCCceEEEeeccc
Q 023838 34 QQDKDWLVSVRRQIHENPELLFEE----------HNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVVLRADMD 103 (276)
Q Consensus 34 ~~~~~~~~~~~~~l~~ips~s~~e----------~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~D 103 (276)
+++++++++++++|++|||+++++ .++++++.++|+++|+++++.....+++++++. ++|+|+|+||+|
T Consensus 7 ~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~-~~~~lll~gH~D 85 (444)
T PRK07205 7 EKVQDACVAAIKTLVSYPSVLNEGENGTPFGQAIQDVLEATLDLCQGLGFKTYLDPKGYYGYAEIGQ-GEELLAILCHLD 85 (444)
T ss_pred HHhHHHHHHHHHHHcccccccCCCcCCCCCchhHHHHHHHHHHHHHhCCCEEEEcCCCeEEEEEecC-CCcEEEEEEeec
Confidence 456789999999999999999754 568889999999999998765444566777643 348999999999
Q ss_pred cCCCcCCCCCcccc----ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHHHHcCC
Q 023838 104 ALPLQELVEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGA 175 (276)
Q Consensus 104 tVp~~~~~~w~~~~----~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~~~~~~ 175 (276)
|||+++...|.++| ++||++||||+ ||++++++.|++.|++.+..++++|.|+|++|||++ .|++++++...
T Consensus 86 vVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~~~~~~~~~~i~l~~~~dEE~g~~g~~~~~~~~~ 165 (444)
T PRK07205 86 VVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALLDAGVQFNKRIRFIFGTDEETLWRCMNRYNEVEE 165 (444)
T ss_pred cCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCcccHHHHHhCCC
Confidence 99998777896543 46899999997 899999999999999988888899999999999987 68888876421
Q ss_pred CC----CCcE---EEEEec------cCCCCcccEEeecc--------ce-e--------------eeE----EEEEEEEE
Q 023838 176 LG----DSEA---IFGMHI------DVGIPTGSIASISG--------PH-L--------------AAT----SVFNVKVE 215 (276)
Q Consensus 176 ~~----~~d~---~i~~~~------~~~~p~~~~~~~~~--------~~-~--------------~G~----~~~~i~~~ 215 (276)
.. ..|. ++..+- -.++|+.......+ .. + +|. .+.+++++
T Consensus 166 ~~~~~~~~~~~~~v~~~ekG~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~l~~~~~~~g~~~~~~~~~v~v~ 245 (444)
T PRK07205 166 QATMGFAPDSSFPLTYAEKGLLQAKLVGPGSDQLELEVGQAFNVVPAKASYQGPKLEAVKKELDKLGFEYVVKENEVTVL 245 (444)
T ss_pred CCCeeECCCCCCceEEEEeceEEEEEEeCCccceEEecCCcccccCceeEEEecCHHHHHHHHHhcCceEeecCcEEEEE
Confidence 10 0110 000000 00223221111111 00 1 221 23489999
Q ss_pred ccCCCcCCCCCCCcHHHHHHHHHHHHHH
Q 023838 216 GRGGHAAMPHSTIDPILTASSVILALQQ 243 (276)
Q Consensus 216 G~~~Hs~~p~~g~nAi~~~~~~i~~l~~ 243 (276)
|+++|||.|+.|.|||..+++++..+++
T Consensus 246 G~~~Hss~p~~g~nAi~~~~~~l~~l~~ 273 (444)
T PRK07205 246 GKSVHAKDAPQGINAVIRLAKALVVLEP 273 (444)
T ss_pred eEEcccCCCccCcCHHHHHHHHHHhccH
Confidence 9999999999999999999999988865
No 43
>PRK07318 dipeptidase PepV; Reviewed
Probab=100.00 E-value=2.5e-32 Score=256.16 Aligned_cols=232 Identities=15% Similarity=0.155 Sum_probs=173.5
Q ss_pred HHHHHHHhhHHHHHHHHHHhhhCCCCCCc------------HHHHHHHHHHHHHhcCCCeeeccCCceEEEEEc-CCCCc
Q 023838 28 QVMISAQQDKDWLVSVRRQIHENPELLFE------------EHNTSALIRRELDKLGIPYAYPVAKTGIVAQIG-SGSRP 94 (276)
Q Consensus 28 ~i~~~i~~~~~~~~~~~~~l~~ips~s~~------------e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~-~~~~~ 94 (276)
++.++++++++++++++++|++|||++++ +.++++||.++|+++|++++..+ |+++++. +.+.|
T Consensus 4 ~~~~~~~~~~~~~~~~l~~lv~i~S~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~G~~~~~~~---n~~~~~~~~~~~~ 80 (466)
T PRK07318 4 DWKKEVEKRKDDLIEDLQELLRINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDGFKTKNVD---NYAGHIEYGEGEE 80 (466)
T ss_pred hHHHHHHHhHHHHHHHHHHHhccCcccCCcccccCCCCCccHHHHHHHHHHHHHHCCCEEEEec---CccceEEECCCCC
Confidence 37788999999999999999999999865 56899999999999999987643 5665553 22348
Q ss_pred eEEEeeccccCCCcCCCCCcccc----ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-cc
Q 023838 95 VVVLRADMDALPLQELVEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AG 166 (276)
Q Consensus 95 ~i~l~~H~DtVp~~~~~~w~~~~----~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g 166 (276)
+|+|+||+||||+++ .|.++| ++||++||||+ ||+++++++|++.|++.+..++++|.|+|++|||.| .|
T Consensus 81 ~l~l~gH~DvVp~~~--~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~g~~~~~~i~l~~~~DEE~g~~G 158 (466)
T PRK07318 81 VLGILGHLDVVPAGD--GWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKELGLPLSKKVRFIVGTDEESGWKC 158 (466)
T ss_pred EEEEEEecCCCCCCC--CCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHHcCCCCCccEEEEEEcccccCchh
Confidence 999999999999864 586554 46899999997 899999999999999888778899999999999998 79
Q ss_pred HHHHHHcCCCCCCcEEEEE---------ec-----------------------cCCCCcccE------Eee---------
Q 023838 167 AFHMIKEGALGDSEAIFGM---------HI-----------------------DVGIPTGSI------ASI--------- 199 (276)
Q Consensus 167 ~~~~~~~~~~~~~d~~i~~---------~~-----------------------~~~~p~~~~------~~~--------- 199 (276)
++++++.... .++.+.. +. .++.+++.+ .+.
T Consensus 159 ~~~l~~~~~~--~~~~~~~d~~~~vi~~E~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~ 236 (466)
T PRK07318 159 MDYYFEHEEA--PDFGFSPDAEFPIINGEKGITTFDLVHFEGENEGDYVLVSFKSGLRENMVPDSAEAVITGDDLDDLIA 236 (466)
T ss_pred HHHHHHhCCC--CCEEEEeCCCCcEEEEEeeeEEEEEEeccccCCCCceeEEEEcCccceecCcccEEEEecCCHHHHHH
Confidence 9999986421 1221111 10 011111110 000
Q ss_pred ------ccceeeeEE-----EEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHh------Hh---h------------
Q 023838 200 ------SGPHLAATS-----VFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQL------IS---R------------ 247 (276)
Q Consensus 200 ------~~~~~~G~~-----~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~------~~---~------------ 247 (276)
...+++|.. +++|+++|+++|++.|+.|.|||..|++++..|+.. .. .
T Consensus 237 ~~~~~~~~~~~kG~~~~~~~~~~i~v~G~aaH~s~p~~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
T PRK07318 237 AFEAFLAENGLKGELEEEGGKLVLTVIGKSAHGSTPEKGVNAATYLAKFLNQLNLDGDAKAFLDFAAEYLHEDTRGEKLG 316 (466)
T ss_pred HHHHHHhhcCceEEEEecCCEEEEEEEeeEcccCCCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCCcccCC
Confidence 001355654 799999999999999999999999999999998741 00 0
Q ss_pred --ccCC-CCCceEEEEEEEeeC
Q 023838 248 --EADP-LQSLVCLSLLLSIYS 266 (276)
Q Consensus 248 --~~~~-~~~~~i~~~~i~~g~ 266 (276)
..+. .+..++|+|.|++|.
T Consensus 317 ~~~~~~~~g~~t~nvg~i~gg~ 338 (466)
T PRK07318 317 IAYEDDVMGDLTMNVGVFSFDE 338 (466)
T ss_pred CcccCCCccCeEEEeeEEEEec
Confidence 0111 245799999999874
No 44
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=100.00 E-value=7.3e-32 Score=243.01 Aligned_cols=209 Identities=13% Similarity=0.107 Sum_probs=166.3
Q ss_pred HHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeeccCCceEEEEEcCCCCceEEEeeccccCCCcCCCCCccccccCC
Q 023838 42 SVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVVLRADMDALPLQELVEWEHKSKIDG 121 (276)
Q Consensus 42 ~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~w~~~~~~~g 121 (276)
+++++|++|||+|++|.++++||+++|+++|+++.. +...|+++..++ ++|+|+|+||+||||. .|+. ..+||
T Consensus 1 ~~l~~lv~i~s~s~~e~~~~~~l~~~l~~~g~~~~~-~~~~~~~~~~~~-~~~~i~~~~H~D~vp~----~~~~-~~~~g 73 (336)
T TIGR01902 1 ELLKDLLEIYSPSGKEANAAKFLEEISKDLGLKLII-DDAGNFILGKGD-GHKKILLAGHVDTVPG----YIPV-KIEGG 73 (336)
T ss_pred ChHHHHhcCCCCCcchHHHHHHHHHHHHHcCCEEEE-CCCCcEEEEeCC-CCceEEEEccccccCC----Cccc-EEeCC
Confidence 368999999999999999999999999999999854 345788887643 3599999999999995 2433 24689
Q ss_pred eeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHHHHcCCCCCCcEEEEEeccCCCCcccEE
Q 023838 122 KMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIA 197 (276)
Q Consensus 122 ~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~~~~~~~~~~d~~i~~~~~~~~p~~~~~ 197 (276)
++||||+ |+++++++.|++.|++. .++|.|++++|||.| .|+++++++.. .+++++ ++|++.-
T Consensus 74 ~i~GrG~~D~Kg~~aa~l~a~~~l~~~----~~~i~~~~~~dEE~g~~G~~~~~~~~~---~~~~ii-----~ept~~~- 140 (336)
T TIGR01902 74 LLYGRGAVDAKGPLIAMIFATWLLNEK----GIKVIVSGLVDEESSSKGAREVIDKNY---PFYVIV-----GEPSGAE- 140 (336)
T ss_pred EEEEecccCCCcHHHHHHHHHHHHHhC----CCcEEEEEEeCcccCCccHHHHHhhcC---CCEEEE-----ecCCCCc-
Confidence 9999987 89999999999999754 468999999999998 79999998743 346666 3455421
Q ss_pred eeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHhHhhccCCCCCceEEEEEEEeeCCccccCCCCC
Q 023838 198 SISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQSLVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 198 ~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~~~i~~g~~~~nvIP~~a 276 (276)
....+++|..+++++++|+++|+|.|. ||+..+.++++.|.+..... .....++++++.++|| .+.|+||++|
T Consensus 141 -~i~~~~kG~~~~~v~~~G~~~Hss~~~---~ai~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~i~gg-~~~nvIP~~a 213 (336)
T TIGR01902 141 -GITLGYKGSLQLKIMCEGTPFHSSSAG---NAAELLIDYSKKIIEVYKQP-ENYDKPSIVPTIIRFG-ESYNDTPAKL 213 (336)
T ss_pred -ceeeeeeeEEEEEEEEEecCcccCCCh---hHHHHHHHHHHHHHHHhccc-cCCCCCcceeEEEEcc-CCCcCCCceE
Confidence 123468899999999999999999885 49999999999997432221 1123457899999987 7999999975
No 45
>PRK13381 peptidase T; Provisional
Probab=100.00 E-value=4.9e-32 Score=249.91 Aligned_cols=217 Identities=13% Similarity=0.107 Sum_probs=169.2
Q ss_pred HHHHHHHHhhhCCCCCC----------cHHHHHHHHHHHHHhcCCCeeeccCCceEEEEEcCC-CC-ceEEEeeccccCC
Q 023838 39 WLVSVRRQIHENPELLF----------EEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSG-SR-PVVVLRADMDALP 106 (276)
Q Consensus 39 ~~~~~~~~l~~ips~s~----------~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~-~~-~~i~l~~H~DtVp 106 (276)
++++.|++|++|||.|+ ++.++++||.++|+++|++....++.+||++++++. ++ |+|+|+||+||||
T Consensus 2 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~nvi~~~~g~~~~~~~lll~~H~D~Vp 81 (404)
T PRK13381 2 QLTDRFFRYLKVNSQSDAASGTLPSTPGQHELAKLLADELRELGLEDIVIDEHAIVTAKLPGNTPGAPRIGFIAHLDTVD 81 (404)
T ss_pred cHHHHhHhhEEEeccCCCCCCCCcCChhHHHHHHHHHHHHHHcCCCcEEEcCCeEEEEEEecCCCCCCeEEEEEEecCCC
Confidence 35788999999999997 478899999999999999655455788999999653 44 9999999999999
Q ss_pred CcCC--CCC---ccc-------------------c-----ccCCeeecCCc-------cHHHHHHHHHHHHHHhccCCCC
Q 023838 107 LQEL--VEW---EHK-------------------S-----KIDGKMHACGH-------DVHTTMLLGAAKLIHQRKDKLK 150 (276)
Q Consensus 107 ~~~~--~~w---~~~-------------------~-----~~~g~l~g~G~-------kg~~a~~l~a~~~l~~~~~~~~ 150 (276)
++.. ..| +|+ + ..+|++||||+ |+++++++.|++.|.+.+ .++
T Consensus 82 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GrG~~~~g~DmKgg~aa~l~a~~~l~~~~-~~~ 160 (404)
T PRK13381 82 VGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSDGTSVLGADNKAAIAVVMTLLENLTENE-VEH 160 (404)
T ss_pred ccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCCCccccccccHHHHHHHHHHHHHHHhcC-CCC
Confidence 8642 111 111 1 13678999774 899999999999998774 468
Q ss_pred ceEEEEEecCCCcc-ccHHHHHHcCCCCCCcEEEEEeccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcC-CCCCCC
Q 023838 151 GTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAA-MPHSTI 228 (276)
Q Consensus 151 ~~v~~~~~~dEE~g-~g~~~~~~~~~~~~~d~~i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~-~p~~g~ 228 (276)
++|.|+|++|||.| .|+++++.++. ..|++++++. ++|+. +. .+++|..+++|+++|+++|++ .|+.|+
T Consensus 161 g~i~~~~~~dEE~g~~G~~~~~~~~~--~~d~~~~~~~--~~~~~-i~----~~~~G~~~~~v~v~Gk~aHa~~~p~~g~ 231 (404)
T PRK13381 161 GDIVVAFVPDEEIGLRGAKALDLARF--PVDFAYTIDC--CELGE-VV----YENFNAASAEITITGVTAHPMSAKGVLV 231 (404)
T ss_pred CCEEEEEEcccccccccHHHHHHhcC--CCCEEEEecC--CCcce-EE----EecCcceEEEEEEEeEecCCCCCcccCc
Confidence 89999999999988 79999987643 3788887654 44532 22 246799999999999999988 599999
Q ss_pred cHHHHHHHHHHHHHHhHhhccCCCCCceEEEEEEEee
Q 023838 229 DPILTASSVILALQQLISREADPLQSLVCLSLLLSIY 265 (276)
Q Consensus 229 nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~~~i~~g 265 (276)
|||..+++++.+|+++..+...+....+++++.|+++
T Consensus 232 NAI~~a~~~i~~l~~~~~~~~~~~~~~~i~v~~i~g~ 268 (404)
T PRK13381 232 NPILMANDFISHFPRQETPEHTEGREGYIWVNDLQGN 268 (404)
T ss_pred CHHHHHHHHHHhCCccCCCCCCCCcccEEEEEeEEeC
Confidence 9999999999999876433222223456888888763
No 46
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=100.00 E-value=1.4e-31 Score=250.97 Aligned_cols=219 Identities=18% Similarity=0.234 Sum_probs=170.8
Q ss_pred HHHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeeccCCceEEEEEcC--C--CCceEEEeeccccCCCcCC--
Q 023838 37 KDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGS--G--SRPVVVLRADMDALPLQEL-- 110 (276)
Q Consensus 37 ~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~--~--~~~~i~l~~H~DtVp~~~~-- 110 (276)
.+++++++++|++|||+|++|.++++||.++++++|++++++ ..+|+++.+++ + ..|+|+|.||+||||+++.
T Consensus 9 ~~~~~~~l~~Lv~ips~S~~e~~~~~~l~~~~~~~G~~~~~d-~~gnvi~~~~~~~g~~~~~~v~l~gH~DtV~~~~~~~ 87 (485)
T PRK15026 9 PQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKGFHVERD-QVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDT 87 (485)
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCEEEEE-ecCeEEEEEcCCCCCCCCCEEEEEeeecccCCCCCCc
Confidence 367899999999999999999999999999999999998875 45799988753 2 2589999999999998643
Q ss_pred -CCCcccc----ccCCeeecCCc------cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHHHHcCCCCC
Q 023838 111 -VEWEHKS----KIDGKMHACGH------DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGD 178 (276)
Q Consensus 111 -~~w~~~~----~~~g~l~g~G~------kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~~~~~~~~~ 178 (276)
.+|..+| ++||++||||+ |+++++++.++ .+.+. .+++|.++|++|||.| .|++.+.. .. .+
T Consensus 88 ~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l---~~~~~-~~~~i~~l~t~dEE~G~~ga~~l~~-~~-~~ 161 (485)
T PRK15026 88 VHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVL---ADENV-VHGPLEVLLTMTEEAGMDGAFGLQS-NW-LQ 161 (485)
T ss_pred cccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHH---HhCCC-CCCCEEEEEEcccccCcHhHHHhhh-cc-CC
Confidence 2575443 36889999886 46666666554 44443 4889999999999998 69998865 33 35
Q ss_pred CcEEEEEeccCCCCcccEE--eecc--------ce----eeeEEEEEEEEEc-cCCCcC-CCCCCC-cHHHHHHHHHHHH
Q 023838 179 SEAIFGMHIDVGIPTGSIA--SISG--------PH----LAATSVFNVKVEG-RGGHAA-MPHSTI-DPILTASSVILAL 241 (276)
Q Consensus 179 ~d~~i~~~~~~~~p~~~~~--~~~~--------~~----~~G~~~~~i~~~G-~~~Hs~-~p~~g~-nAi~~~~~~i~~l 241 (276)
.|++|.+++. ..+.+. ...| .. .+|...++|+++| +++||+ .|+.|+ ||+..+++++.++
T Consensus 162 ~~~~i~~e~~---~~g~l~~g~~G~~~~~~~~~~~r~~~~~g~~~~~i~v~Gl~ggHsG~~i~~g~~nAi~~la~~l~~~ 238 (485)
T PRK15026 162 ADILINTDSE---EEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGH 238 (485)
T ss_pred cCEEEEeCCC---CCCeEEEeCCCcceEEEEEEEEEEecCCCceEEEEEEECCCCcCChHHHCCCCccHHHHHHHHHHHh
Confidence 7899987642 223221 1100 01 1477899999999 999999 899999 9999999999985
Q ss_pred HHhHhhccCCCCCceEEEEEEEeeCCccccCCCCC
Q 023838 242 QQLISREADPLQSLVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 242 ~~~~~~~~~~~~~~~i~~~~i~~g~~~~nvIP~~a 276 (276)
.. .++++++.|+|| ...|+||++|
T Consensus 239 ~~----------~~~~~v~~i~GG-~~~NaIp~~a 262 (485)
T PRK15026 239 AE----------ELDLRLIDFNGG-TLRNAIPREA 262 (485)
T ss_pred Hh----------hCCeEEEEEeCC-CccCCCCCCc
Confidence 41 468899999997 7999999987
No 47
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-31 Score=236.53 Aligned_cols=234 Identities=17% Similarity=0.183 Sum_probs=185.0
Q ss_pred HHHHHHHHHHhhhCCCCCCc--HH-HHHHHHHHHHHhcCCCeee---ccCCceEEEEEcCC-C-CceEEEeeccccCCCc
Q 023838 37 KDWLVSVRRQIHENPELLFE--EH-NTSALIRRELDKLGIPYAY---PVAKTGIVAQIGSG-S-RPVVVLRADMDALPLQ 108 (276)
Q Consensus 37 ~~~~~~~~~~l~~ips~s~~--e~-~~~~~l~~~l~~~G~~~~~---~~~~~nvia~~~~~-~-~~~i~l~~H~DtVp~~ 108 (276)
+...+..+++.+|||++-.+ -. .+++|+..+.+.+|..+++ .++.++++.+|.|. + .|+|+|++|+||||+.
T Consensus 24 ~~~~v~~f~eylRi~Tv~p~~dy~~a~~~Fl~~~a~~l~l~~~~i~~~p~~~~~l~T~~GS~P~L~silL~SH~DVVP~f 103 (420)
T KOG2275|consen 24 ENISVTRFREYLRIPTVQPNPDYTIACADFLKKYAKSLGLTVQKIESEPGKYVLLYTWLGSDPELPSILLNSHTDVVPVF 103 (420)
T ss_pred cchHHHHHHHHhhccccccCCCccHHHHHHHHHHHHhcCCceeEEEecCceeEEEEEeeCCCCCccceeeeccccccCCC
Confidence 35677788899999987543 23 7899999999999998754 34578899999764 3 5999999999999995
Q ss_pred CCCCCcccc-----ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc--ccHHHHHHcCCCCC
Q 023838 109 ELVEWEHKS-----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG--AGAFHMIKEGALGD 178 (276)
Q Consensus 109 ~~~~w~~~~-----~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g--~g~~~~~~~~~~~~ 178 (276)
.+ .|.++| .++|+|||||+ |+..++++.|++.|+..+.+++++|.+.|++|||.+ .|++.+.+...+.+
T Consensus 104 ~e-~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~kp~Rti~lsfvpDEEi~G~~Gm~~fa~~~~~~~ 182 (420)
T KOG2275|consen 104 RE-KWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFKPKRTIHLSFVPDEEIGGHIGMKEFAKTEEFKK 182 (420)
T ss_pred cc-cCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCCcCceEEEEecCchhccCcchHHHHhhhhhhcc
Confidence 54 898775 36899999998 899999999999999999999999999999999987 79998887444555
Q ss_pred CcEEEEEeccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHhHhhcc-----C---
Q 023838 179 SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREA-----D--- 250 (276)
Q Consensus 179 ~d~~i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~-----~--- 250 (276)
....++++- |.++..-...++.+++|.+|++++++|.++|||.|.. ..|+.++.++++.+++...++. .
T Consensus 183 l~~~filDE--G~~se~d~~~vfyaEkg~w~~~v~~~G~~GHss~~~~-nTa~~~l~klv~~~~~fr~~q~~~l~~~p~~ 259 (420)
T KOG2275|consen 183 LNLGFILDE--GGATENDFATVFYAEKGPWWLKVTANGTPGHSSYPPP-NTAIEKLEKLVESLEEFREKQVDLLASGPKL 259 (420)
T ss_pred cceeEEecC--CCCCcccceeEEEEeeceeEEEEEecCCCCCCCCCCC-ccHHHHHHHHHHHHHHhHHHHHHHhhcCCce
Confidence 566666532 2222222245567899999999999999999997533 3688888888888887663321 1
Q ss_pred -CCCCceEEEEEEEeeCCccccCCCC
Q 023838 251 -PLQSLVCLSLLLSIYSETCELLPLK 275 (276)
Q Consensus 251 -~~~~~~i~~~~i~~g~~~~nvIP~~ 275 (276)
-...+|+|++.|+|| .+.|++|..
T Consensus 260 ~~~~vtT~Nv~~i~GG-v~~N~~P~~ 284 (420)
T KOG2275|consen 260 ALGDVTTINVGIINGG-VQSNVLPET 284 (420)
T ss_pred eccceeEEeeeeeecc-cccCcCchh
Confidence 245899999999998 799999975
No 48
>PRK05469 peptidase T; Provisional
Probab=100.00 E-value=2.1e-31 Score=245.99 Aligned_cols=219 Identities=16% Similarity=0.138 Sum_probs=167.1
Q ss_pred HHHHHHHHHhhhCCCCCCc----------HHHHHHHHHHHHHhcCCCeeeccCCceEEEEEcCC---CCceEEEeecccc
Q 023838 38 DWLVSVRRQIHENPELLFE----------EHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSG---SRPVVVLRADMDA 104 (276)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~----------e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~---~~~~i~l~~H~Dt 104 (276)
+++++.|++|++|||+|.+ |.++++||+++|+++|++....+..+|+++.+++. ++|+|+|+|||||
T Consensus 2 ~~~~~~l~~~~~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~v~~~~~g~~~~~~~~i~l~~H~D~ 81 (408)
T PRK05469 2 DKLLERFLRYVKIDTQSDENSTTVPSTEGQWDLAKLLVEELKELGLQDVTLDENGYVMATLPANVDKDVPTIGFIAHMDT 81 (408)
T ss_pred chHHHHHHhhEEeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEECCCeEEEEEecCCCCCCCCeEEEEEeccC
Confidence 4678999999999999966 88999999999999999733334567899999653 2599999999999
Q ss_pred CCCcCC---------------------CCCccccc--------cCCeeec-------CCccHHHHHHHHHHHHHHhccCC
Q 023838 105 LPLQEL---------------------VEWEHKSK--------IDGKMHA-------CGHDVHTTMLLGAAKLIHQRKDK 148 (276)
Q Consensus 105 Vp~~~~---------------------~~w~~~~~--------~~g~l~g-------~G~kg~~a~~l~a~~~l~~~~~~ 148 (276)
||+.+. ..|++.+. ..+.+|| .++|+++++++.|++.|++.+..
T Consensus 82 vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~rG~~~lg~D~Kgglaa~l~a~~~l~~~~~~ 161 (408)
T PRK05469 82 APDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTDGTTLLGADDKAGIAEIMTALEYLIAHPEI 161 (408)
T ss_pred CCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEEcCCCEeecccchHHHHHHHHHHHHHHhCCCC
Confidence 987431 23444321 1234666 44589999999999999887666
Q ss_pred CCceEEEEEecCCCccccHHHHHHcCCCCCCcEEEEEeccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcC-CCCCC
Q 023838 149 LKGTVRILFQPAEEGGAGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAA-MPHST 227 (276)
Q Consensus 149 ~~~~v~~~~~~dEE~g~g~~~~~~~~~~~~~d~~i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~-~p~~g 227 (276)
++++|.|+|++|||.|.|++.++.++. +.|+.++++ +.+.+.+.. ..+|..+++|+++|+++|++ .|+.|
T Consensus 162 ~~g~v~~~f~~dEE~g~Ga~~~~~~~~--~~~~~~~~~---~~~~g~~~~----~~~g~~~~~i~v~Gk~~Ha~~~p~~g 232 (408)
T PRK05469 162 KHGDIRVAFTPDEEIGRGADKFDVEKF--GADFAYTVD---GGPLGELEY----ENFNAASAKITIHGVNVHPGTAKGKM 232 (408)
T ss_pred CCCCEEEEEecccccCCCHHHhhhhhc--CCcEEEEec---CCCcceEEe----ccCceeEEEEEEeeecCCCCCCcccc
Confidence 789999999999998888988875432 356666654 235555433 35688899999999999987 68999
Q ss_pred CcHHHHHHHHHHHHHHhHhhccCCCCCceEEEEEEEee
Q 023838 228 IDPILTASSVILALQQLISREADPLQSLVCLSLLLSIY 265 (276)
Q Consensus 228 ~nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~~~i~~g 265 (276)
+||+..+++++..|+++..+........+++++.|+||
T Consensus 233 ~nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~g~i~gg 270 (408)
T PRK05469 233 VNALLLAADFHAMLPADETPETTEGYEGFYHLTSIKGT 270 (408)
T ss_pred cCHHHHHHHHHHhCCCCCCCCCCCCceEEEEEEEEEEc
Confidence 99999999999998875432222222356888888876
No 49
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=99.98 E-value=8.6e-32 Score=248.67 Aligned_cols=223 Identities=16% Similarity=0.178 Sum_probs=168.3
Q ss_pred HHHHHHHHHhhhCCCCCC----------cHHHHHHHHHHHHHhcCCC-eeeccCCceEEEEEcCCCC---ceEEEeeccc
Q 023838 38 DWLVSVRRQIHENPELLF----------EEHNTSALIRRELDKLGIP-YAYPVAKTGIVAQIGSGSR---PVVVLRADMD 103 (276)
Q Consensus 38 ~~~~~~~~~l~~ips~s~----------~e~~~~~~l~~~l~~~G~~-~~~~~~~~nvia~~~~~~~---~~i~l~~H~D 103 (276)
+++++.|.++++|+|+|+ .|.+++++|+++|+++|++ ++.+.+.+||++++++..+ |+|+|.+|||
T Consensus 3 ~~~~~~f~~~~~i~s~s~~~~~~~ps~~~~~~~a~~l~~~l~~lG~~~v~~d~~~gnv~~~~~~~~~~~~~~i~~~aHmD 82 (410)
T TIGR01882 3 EELLPRFLTYVKVNTRSDENSDTCPSTPGQLTFGNMLVDDLKSLGLQDAHYDEKNGYVIATIPSNTDKDVPTIGFLAHVD 82 (410)
T ss_pred hHHHHHHHhhEEEecccCCCCCCCCCCHhHHHHHHHHHHHHHHcCCceEEEcCCceEEEEEecCCCCCCCCEEEEEEecc
Confidence 578899999999999997 5558999999999999997 7765437899999966433 9999999999
Q ss_pred cCCC-cCCC------------------------CCcccc-----------ccCCeeecCCccHHHHHHHHHHHHHHhccC
Q 023838 104 ALPL-QELV------------------------EWEHKS-----------KIDGKMHACGHDVHTTMLLGAAKLIHQRKD 147 (276)
Q Consensus 104 tVp~-~~~~------------------------~w~~~~-----------~~~g~l~g~G~kg~~a~~l~a~~~l~~~~~ 147 (276)
|||. +..- .|.|++ ..++.+||+++|+++|+++.|++.|++.+.
T Consensus 83 Tv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~g~~l~G~D~KgglAa~l~A~~~L~e~~~ 162 (410)
T TIGR01882 83 TADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLITTDGTTLLGADDKAGIAEIMTAADYLINHPE 162 (410)
T ss_pred cCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEEcCCCEeecccCHHHHHHHHHHHHHHHhCCC
Confidence 9984 3220 344332 235699999999999999999999988644
Q ss_pred CCCceEEEEEecCCCccccHHHHHHcCCCCCCcEEEEEeccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcCCC-CC
Q 023838 148 KLKGTVRILFQPAEEGGAGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMP-HS 226 (276)
Q Consensus 148 ~~~~~v~~~~~~dEE~g~g~~~~~~~~~~~~~d~~i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p-~~ 226 (276)
.++++|.|+|++|||.|.|++.+..++. +.|+.+++. ++|++.+... ..|..+++|+++|+++|++.+ +.
T Consensus 163 ~~~g~I~~~ft~dEE~g~Ga~~l~~~~~--~~~~~~~i~---gep~g~i~~~----~~g~~~~~I~v~Gk~aHa~~~~~~ 233 (410)
T TIGR01882 163 IKHGTIRVAFTPDEEIGRGAHKFDVKDF--NADFAYTVD---GGPLGELEYE----TFSAAAAKITIQGNNVHPGTAKGK 233 (410)
T ss_pred CCCCCEEEEEECcccCCcCcchhhhhhc--CccEEEEeC---CCCCCeEEEc----cccceEEEEEEEEEecCcccChHH
Confidence 4689999999999999888888875542 356655543 5677765332 357899999999999999954 67
Q ss_pred CCcHHHHHHHHHHHHHHhHhhccCCCCCceEEEEEEEeeCCccccCCCCC
Q 023838 227 TIDPILTASSVILALQQLISREADPLQSLVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 227 g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~~~i~~g~~~~nvIP~~a 276 (276)
++||+..+.+++..+..... + ..++-+.+.+++| .+|.||++|
T Consensus 234 g~nAi~~a~~~~~~l~~~~~----~-~~t~~~~g~i~~g--~i~giPd~a 276 (410)
T TIGR01882 234 MINAAQIAIDLHNLLPEDDR----P-EYTEGREGFFHLL--SIDGTVEEA 276 (410)
T ss_pred HHHHHHHHHHHHHhcCCcCC----C-ccccceeEEEEEE--eEEEecCEE
Confidence 99999999988776654211 1 1122223556654 467788875
No 50
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=99.98 E-value=4.9e-31 Score=243.83 Aligned_cols=220 Identities=14% Similarity=0.149 Sum_probs=168.4
Q ss_pred HHHHHHHHHHhhhCCC---------CCCcHHHHHHHHHHHHHhcCCCeeeccCCceEEEEEcCC-CCceEEEeeccccCC
Q 023838 37 KDWLVSVRRQIHENPE---------LLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSG-SRPVVVLRADMDALP 106 (276)
Q Consensus 37 ~~~~~~~~~~l~~ips---------~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~-~~~~i~l~~H~DtVp 106 (276)
++++++.+++|++++| .+++|.++++||.++|+++|+++++. .++|+++++++. ++|+|+|+||+||||
T Consensus 9 ~~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~-~~~nl~a~~~g~~~~~~l~l~gH~DtVp 87 (412)
T PRK12892 9 GQRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAGLAVRID-GIGNVFGRLPGPGPGPALLVGSHLDSQN 87 (412)
T ss_pred HHHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcCCEEEEc-CCCcEEEEecCCCCCCeEEEEccccCCC
Confidence 4678899999999876 45678999999999999999998874 567999999753 458999999999999
Q ss_pred CcCCCCCccccccCCeeecCCccHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCc-----c-ccHHHHHHcCC-----
Q 023838 107 LQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEG-----G-AGAFHMIKEGA----- 175 (276)
Q Consensus 107 ~~~~~~w~~~~~~~g~l~g~G~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~-----g-~g~~~~~~~~~----- 175 (276)
++ |+.||++ ++++++.+++.|++.+..++++|.|++++|||+ + .|+++++.+..
T Consensus 88 ~~------------g~~dg~~---Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~ 152 (412)
T PRK12892 88 LG------------GRYDGAL---GVVAGLEAARALNEHGIATRHPLDVVAWCDEEGSRFTPGFLGSRAYAGRLDPADAL 152 (412)
T ss_pred CC------------CcccchH---HHHHHHHHHHHHHHcCCCCCCCeEEEEecCcccccccCccccHHHHHcCCCHHHHH
Confidence 74 3445653 799999999999998888999999999999998 3 48888874210
Q ss_pred -----C-------------CCCcEEEE-----------EeccCC---CCcccEEeeccceeeeEEEEEEEEEccCCCcC-
Q 023838 176 -----L-------------GDSEAIFG-----------MHIDVG---IPTGSIASISGPHLAATSVFNVKVEGRGGHAA- 222 (276)
Q Consensus 176 -----~-------------~~~d~~i~-----------~~~~~~---~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~- 222 (276)
. -..|+++. +|.+.+ +|++. ......+++|..+++|+++|+++|++
T Consensus 153 ~~~~~~~~~~~~~~~~~~g~~~d~~~~~ep~~~~~~~e~~~~~g~~~e~~~~-~~~i~~~~kG~~~~~i~v~G~~aHa~~ 231 (412)
T PRK12892 153 AARCRSDGVPLRDALAAAGLAGRPRPAADRARPKGYLEAHIEQGPVLEQAGL-PVGVVTGIVGIWQYRITVTGEAGHAGT 231 (412)
T ss_pred hCccCCCCcCHHHHHHHcCCChhhcccccccCccEEEEEEeccCHhHhhCCC-cEEEEEEeccceEEEEEEEEECCCCCC
Confidence 0 01222232 122111 12221 11234568899999999999999998
Q ss_pred CCC-CCCcHHHHHHHHHHHHHHhHhhccCCCCCceEEEEEEEeeCCccccCCCCC
Q 023838 223 MPH-STIDPILTASSVILALQQLISREADPLQSLVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 223 ~p~-~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~~~i~~g~~~~nvIP~~a 276 (276)
.|+ .|.||+..+++++.+|+++..+.. .++++++|.|++|+.+.|+||++|
T Consensus 232 ~p~~~g~nAi~~a~~~i~~l~~~~~~~~---~~~~~~vg~i~gg~~~~NvIP~~a 283 (412)
T PRK12892 232 TPMALRRDAGLAAAEMIAAIDEHFPRVC---GPAVVTVGRVALDPGSPSIIPGRV 283 (412)
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHhcC---CCcEEEEEEEEecCCCCeEECCeE
Confidence 575 578999999999999998654322 347999999998756999999975
No 51
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=99.97 E-value=1.6e-30 Score=240.46 Aligned_cols=220 Identities=17% Similarity=0.242 Sum_probs=169.5
Q ss_pred HHHHHHHHHHhhhCCCC----------CCcHHHHHHHHHHHHHhcCCCeeeccCCceEEEEEcCC-C-CceEEEeecccc
Q 023838 37 KDWLVSVRRQIHENPEL----------LFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSG-S-RPVVVLRADMDA 104 (276)
Q Consensus 37 ~~~~~~~~~~l~~ips~----------s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~-~-~~~i~l~~H~Dt 104 (276)
++++++++++|++|||. |++|.++++||.++|+++|+++++. ...|+++++++. + +|+|+|+||+||
T Consensus 9 ~~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G~~~~~~-~~~n~~a~~~g~~~~~~~l~l~~H~Dt 87 (412)
T PRK12893 9 GERLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAGLTVSVD-AIGNLFGRRAGTDPDAPPVLIGSHLDT 87 (412)
T ss_pred HHHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcCCEEEEc-CCCcEEEEeCCCCCCCCEEEEEecccC
Confidence 47899999999999964 4458999999999999999998874 467999999653 2 589999999999
Q ss_pred CCCcCCCCCccccccCCeeecCCccHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc------ccHHHHHHcCCC--
Q 023838 105 LPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG------AGAFHMIKEGAL-- 176 (276)
Q Consensus 105 Vp~~~~~~w~~~~~~~g~l~g~G~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g------~g~~~~~~~~~~-- 176 (276)
||++ |..|| |+++++++++++.|++.+..++++|.|+|++|||++ .|+.++......
T Consensus 88 Vp~~------------g~~dg---k~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~G~~~~~~~~~~~~ 152 (412)
T PRK12893 88 QPTG------------GRFDG---ALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEGARFAPAMLGSGVFTGALPLDD 152 (412)
T ss_pred CCCC------------Ccccc---hhhHHHHHHHHHHHHHcCCCCCCCeEEEEEccccccccccccccHHHHhCcCChHH
Confidence 9963 33345 468999999999999888788999999999999984 477777643110
Q ss_pred -----------------------------CCCcEEEEEeccCCC---CcccEEeeccceeeeEEEEEEEEEccCCCcC-C
Q 023838 177 -----------------------------GDSEAIFGMHIDVGI---PTGSIASISGPHLAATSVFNVKVEGRGGHAA-M 223 (276)
Q Consensus 177 -----------------------------~~~d~~i~~~~~~~~---p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~-~ 223 (276)
++.|..+.+|..++. +.+. ...+..+++|..+++|+++|+++|+| .
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~i~~~~kG~~~~~i~v~G~~aHas~~ 231 (412)
T PRK12893 153 ALARRDADGITLGEALARIGYRGTARVGRRAVDAYLELHIEQGPVLEAEGL-PIGVVTGIQGIRWLEVTVEGQAAHAGTT 231 (412)
T ss_pred HHhccCCCCCCHHHHHHHcCCCcccccccCCccEEEEEEeccCHHHHHCCC-cEEEEeeecccEEEEEEEEEECCCcCCC
Confidence 012334444432221 1110 11234568899999999999999998 5
Q ss_pred CC-CCCcHHHHHHHHHHHHHHhHhhccCCCCCceEEEEEEEeeCCccccCCCCC
Q 023838 224 PH-STIDPILTASSVILALQQLISREADPLQSLVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 224 p~-~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~~~i~~g~~~~nvIP~~a 276 (276)
|+ .|+|||..+++++.+|+++..+. . ..+++++|.|++|+...|+||++|
T Consensus 232 p~~~G~NAI~~a~~~i~~l~~~~~~~-~--~~~~~~vg~i~ggg~~~NvVP~~a 282 (412)
T PRK12893 232 PMAMRRDALVAAARIILAVERIAAAL-A--PDGVATVGRLRVEPNSRNVIPGKV 282 (412)
T ss_pred cchhccCHHHHHHHHHHHHHHHHHhc-C--CCceEEEEEEEeeCCCceEECCee
Confidence 85 79999999999999999875432 1 257899999998657999999986
No 52
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.97 E-value=2.9e-30 Score=242.80 Aligned_cols=221 Identities=16% Similarity=0.185 Sum_probs=167.7
Q ss_pred HHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeeccCCceEEEEEcCC----CCceEEEeeccccCCCcCC---
Q 023838 38 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSG----SRPVVVLRADMDALPLQEL--- 110 (276)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~----~~~~i~l~~H~DtVp~~~~--- 110 (276)
+++++++++|++|||+|++|.++++||.++|+++|++++++ ...|+++++++. +.|+|+|.||+||||++..
T Consensus 4 ~~~~~~l~~l~~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~-~~~n~~~~~~~~~g~~~~~~l~l~~HlDtV~~~~~~~~ 82 (477)
T TIGR01893 4 SRVFKYFEEISKIPRPSKNEKEVSNFIVNWAKKLGLEVKQD-EVGNVLIRKPATPGYENHPPIVLQGHMDMVCEKNEDSL 82 (477)
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHcCCeEEEe-CCCeEEEEEcCCCCCCCCCeEEEEeeccccCCCCCCCC
Confidence 57889999999999999999999999999999999998875 467999998542 2489999999999998643
Q ss_pred CCCccc---c-ccCCeeecCCc------cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHHHHcCCCCCC
Q 023838 111 VEWEHK---S-KIDGKMHACGH------DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDS 179 (276)
Q Consensus 111 ~~w~~~---~-~~~g~l~g~G~------kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~~~~~~~~~~ 179 (276)
..|..+ + .+||++||||+ |+++++++++++. .+ ..+++|.++|++|||+| .|++++..... +.
T Consensus 83 ~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~---~~-~~~~~i~~~~~~dEE~g~~Gs~~l~~~~~--~~ 156 (477)
T TIGR01893 83 HDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED---NN-LKHPPLELLFTVDEETGMDGALGLDENWL--SG 156 (477)
T ss_pred CCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc---CC-CCCCCEEEEEEeccccCchhhhhcChhhc--CC
Confidence 357544 3 46899999985 5777777776553 22 35679999999999988 79999876532 23
Q ss_pred cEEEEEeccC------CCCcccE---Eeec--cceeeeEEEEEEEEEc-cCCCcC-CCCCCC-cHHHHHHHHHHHHHHhH
Q 023838 180 EAIFGMHIDV------GIPTGSI---ASIS--GPHLAATSVFNVKVEG-RGGHAA-MPHSTI-DPILTASSVILALQQLI 245 (276)
Q Consensus 180 d~~i~~~~~~------~~p~~~~---~~~~--~~~~~G~~~~~i~~~G-~~~Hs~-~p~~g~-nAi~~~~~~i~~l~~~~ 245 (276)
++++..+... +.+.+.. .+.. ...++|..+++|+++| +++||| .|+.++ ||+..++++|..+++..
T Consensus 157 ~~~~~~d~~~~~~~~~g~~~~~~~~~~~e~~~e~~~kG~~~~~i~~~G~~~~Hsg~~p~~~r~nAi~~aa~~i~~l~~~~ 236 (477)
T TIGR01893 157 KILINIDSEEEGEFIVGCAGGRNVDITFPVKYEKFTKNEEGYQISLKGLKGGHSGADIHKGRANANKLMARVLNELKENL 236 (477)
T ss_pred cEEEEecCCCCCeEEEECCCCeeEEEEEEEEEEecCCCceEEEEEEeCcCCCcCccccCCCCcCHHHHHHHHHHhhhhcC
Confidence 5555433100 1122110 0000 1114688999999999 999998 699996 99999999999998742
Q ss_pred hhccCCCCCceEEEEEEEeeCCccccCCCCC
Q 023838 246 SREADPLQSLVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 246 ~~~~~~~~~~~i~~~~i~~g~~~~nvIP~~a 276 (276)
..+++.+.|| .+.|+||++|
T Consensus 237 ----------~~~v~~~~gg-~~~N~ip~~~ 256 (477)
T TIGR01893 237 ----------NFRLSDIKGG-SKRNAIPREA 256 (477)
T ss_pred ----------CeEEEEEeCC-CcccccCCce
Confidence 2578899987 7999999986
No 53
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=99.97 E-value=1.9e-30 Score=240.07 Aligned_cols=218 Identities=18% Similarity=0.275 Sum_probs=168.6
Q ss_pred HHHHHHHHHHhhhC-C---------CCCCcHHHHHHHHHHHHHhcCCCeeeccCCceEEEEEcCC--CCceEEEeecccc
Q 023838 37 KDWLVSVRRQIHEN-P---------ELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSG--SRPVVVLRADMDA 104 (276)
Q Consensus 37 ~~~~~~~~~~l~~i-p---------s~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~--~~~~i~l~~H~Dt 104 (276)
.+.+++++++|++| + |+|++|.++++||.++|+++|+++++. .++|+++++++. ++|+|+|+||+||
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g~~~~~~-~~~nl~a~~~g~~~~~~~l~l~gH~Dt 84 (413)
T PRK09290 6 AERLWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAGLTVRVD-AVGNLFGRLEGRDPDAPAVLTGSHLDT 84 (413)
T ss_pred HHHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcCCEEEEc-CCCcEEEEecCCCCCCCEEEEecCccC
Confidence 46788888888888 3 778889999999999999999998874 568999999653 2589999999999
Q ss_pred CCCcCCCCCccccccCCeeecCCccHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc------ccHHHHHHc-----
Q 023838 105 LPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG------AGAFHMIKE----- 173 (276)
Q Consensus 105 Vp~~~~~~w~~~~~~~g~l~g~G~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g------~g~~~~~~~----- 173 (276)
||++ |.. ++|+++|+++.|++.|++.+..++++|.|++++|||.| .|++.+++.
T Consensus 85 Vp~~------------g~~---d~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~G~~~~~~~~~~~~ 149 (413)
T PRK09290 85 VPNG------------GRF---DGPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEGSRFGPAMLGSRVFTGALTPED 149 (413)
T ss_pred CCCC------------CCc---CCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCccccccCccccHHHHHcccCHHH
Confidence 9973 222 33678999999999999888778999999999999983 477766532
Q ss_pred -------------------CCCCCCcEEEEE-------------eccC---CCCcccEEeeccceeeeEEEEEEEEEccC
Q 023838 174 -------------------GALGDSEAIFGM-------------HIDV---GIPTGSIASISGPHLAATSVFNVKVEGRG 218 (276)
Q Consensus 174 -------------------~~~~~~d~~i~~-------------~~~~---~~p~~~~~~~~~~~~~G~~~~~i~~~G~~ 218 (276)
+ + +.|++++. |.+. .+|++. ...+..+++|..+++|+++|++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~-~-~~d~~i~~~~ept~~~~~~~~~~~~~~~~e~~~~-~~~i~~~~kG~~~~~i~v~Gk~ 226 (413)
T PRK09290 150 ALALRDADGVSFAEALAAIG-Y-DGDEAVGAARARRDIKAFVELHIEQGPVLEAEGL-PIGVVTGIVGQRRYRVTFTGEA 226 (413)
T ss_pred HHhccCCCCCCHHHHHHHcC-C-ChhhccccccCCCCccEEEEEEeccCHHHHHCCC-cEEEEeeeeccEEEEEEEEEEC
Confidence 2 2 34555532 1100 022221 1123456889999999999999
Q ss_pred CCcC-CC-CCCCcHHHHHHHHHHHHHHhHhhccCCCCCceEEEEEEEeeCCccccCCCCC
Q 023838 219 GHAA-MP-HSTIDPILTASSVILALQQLISREADPLQSLVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 219 ~Hs~-~p-~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~~~i~~g~~~~nvIP~~a 276 (276)
+|++ .| +.|+|||..+++++.+|+++..+. ..+.+++++.|++|+.+.|+||++|
T Consensus 227 aHas~~P~~~g~NAI~~~~~~i~~l~~l~~~~---~~~~~~~~g~i~~g~~~~NvIP~~a 283 (413)
T PRK09290 227 NHAGTTPMALRRDALLAAAEIILAVERIAAAH---GPDLVATVGRLEVKPNSVNVIPGEV 283 (413)
T ss_pred CCCCCCCchhccCHHHHHHHHHHHHHHHHHhc---CCCeEEEEEEEEEcCCCCeEECCEE
Confidence 9998 68 578999999999999998875432 1257899999997656999999975
No 54
>PRK06156 hypothetical protein; Provisional
Probab=99.97 E-value=2.7e-30 Score=245.04 Aligned_cols=206 Identities=13% Similarity=0.164 Sum_probs=154.3
Q ss_pred HHhhHHHHHHHHHHhhhCCCCCC-----cH----HHHHHHHHHHHHhcCCCeeeccCCceEE-EEEcCCCCceEEEeecc
Q 023838 33 AQQDKDWLVSVRRQIHENPELLF-----EE----HNTSALIRRELDKLGIPYAYPVAKTGIV-AQIGSGSRPVVVLRADM 102 (276)
Q Consensus 33 i~~~~~~~~~~~~~l~~ips~s~-----~e----~~~~~~l~~~l~~~G~~~~~~~~~~nvi-a~~~~~~~~~i~l~~H~ 102 (276)
.+++.+++++++++|++|||++. +| ..+++||.++|+++|++++.. ..+++ +++++...|+|+|+||+
T Consensus 41 ~~~~~~~~~~~l~~lv~i~S~~~~~~~~~e~~~~~~~~~~l~~~l~~~G~~~~~~--~~~v~~~~~~g~~~~~l~l~gH~ 118 (520)
T PRK06156 41 RLKYGAAAIESLRELVAFPTVRVEGVPQHENPEFIGFKKLLKSLARDFGLDYRNV--DNRVLEIGLGGSGSDKVGILTHA 118 (520)
T ss_pred hhhhHHHHHHHHHHhcCcCcccCCCCCccCCccHHHHHHHHHHHHHHCCCeEEec--CCeEEEEEecCCCCCeEEEEEec
Confidence 45667899999999999999874 23 356899999999999998643 22344 67765445899999999
Q ss_pred ccCCCcCCCCCcc-----cc----ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHH
Q 023838 103 DALPLQELVEWEH-----KS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFH 169 (276)
Q Consensus 103 DtVp~~~~~~w~~-----~~----~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~ 169 (276)
||||++. ..|.+ +| ++||++||||+ |+++++++.|++.|.+.+.+++++|.|+|++|||.| .|+++
T Consensus 119 DvVp~~~-~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~ 197 (520)
T PRK06156 119 DVVPANP-ELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMKAIKDSGLPLARRIELLVYTTEETDGDPLKY 197 (520)
T ss_pred CccCCCC-ccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHHHHHHcCCCCCceEEEEEecccccCchhHHH
Confidence 9999864 46876 54 35899999987 899999999999998888778899999999999987 79999
Q ss_pred HHHcCCCCCCcEEEEEecc----CCCCcc-----------------------------------cEEeec----------
Q 023838 170 MIKEGALGDSEAIFGMHID----VGIPTG-----------------------------------SIASIS---------- 200 (276)
Q Consensus 170 ~~~~~~~~~~d~~i~~~~~----~~~p~~-----------------------------------~~~~~~---------- 200 (276)
++.++.. .++.++++.+ .++|+. ...+..
T Consensus 198 ~~~~~~~--~~~~~~~D~~~~~~~~E~~~~~~~i~~~~~~~~~~~~~l~~~~gG~~~n~ip~~a~~~~~~~~~~~~~~~~ 275 (520)
T PRK06156 198 YLERYTP--PDYNITLDAEYPVVTAEKGWGTIMATFPKRAADGKGAEIVAMTGGAFANQIPQTAVATLSGGDPAALAAAL 275 (520)
T ss_pred HHHhcCC--CCeEEeeCCCCceEEEecceEEEEEEecCcCCCCCceeEEEEEcCCcCCCCCCccEEEEecCCHHHHHHHH
Confidence 9887532 3443322100 011110 000000
Q ss_pred -------cceeeeEE---------EEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHH
Q 023838 201 -------GPHLAATS---------VFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQ 243 (276)
Q Consensus 201 -------~~~~~G~~---------~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~ 243 (276)
..+++|.. +++|+++|+++|+|.|+.|.|||..+++++..|++
T Consensus 276 ~~~~~~~~~~~~g~~~~~~~~~~~~~~I~v~Gk~aHsS~P~~G~NAI~~aa~ii~~L~~ 334 (520)
T PRK06156 276 QAAAAAQVKRHGGGFSIDFKRDGKDVTITVTGKSAHSSTPESGVNPVTRLALFLQSLDG 334 (520)
T ss_pred HHHHHHHHhhcccCceEEEEEcCCeEEEEEEeEECCCCCCCCCccHHHHHHHHHHhccc
Confidence 00122333 89999999999999999999999999999999976
No 55
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=99.97 E-value=1.6e-29 Score=235.43 Aligned_cols=222 Identities=15% Similarity=0.138 Sum_probs=161.3
Q ss_pred HHHHHHHHHhhhCCCCCCc------------HHHHHHHHHHHHHhcCCCeeeccCCceEEE--EEcCCCCceEEEeeccc
Q 023838 38 DWLVSVRRQIHENPELLFE------------EHNTSALIRRELDKLGIPYAYPVAKTGIVA--QIGSGSRPVVVLRADMD 103 (276)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~------------e~~~~~~l~~~l~~~G~~~~~~~~~~nvia--~~~~~~~~~i~l~~H~D 103 (276)
+++++++++|++|||++.+ +.++++|+.++|+++|+++++. .|+.+ .++ +..|+|+|+||+|
T Consensus 2 ~~~i~ll~~Lv~ipS~s~~~~p~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~---~~~~~~~~~~-~~~~~l~l~gH~D 77 (447)
T TIGR01887 2 DEILEDLKELIRIDSVEDLEEAKEGAPFGEGPKKALDKFLELAKRDGFTTENV---DNYAGYAEYG-QGEEYLGILGHLD 77 (447)
T ss_pred hHHHHHHHHhcCcCcCCCCCCCCCCCCcchhHHHHHHHHHHHHHHcCceEEEe---cCceEEEEeC-CCCCeEEEEeecC
Confidence 4789999999999999832 4689999999999999998753 23333 333 2348999999999
Q ss_pred cCCCcCCCCCcccc----ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHHHHcCC
Q 023838 104 ALPLQELVEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGA 175 (276)
Q Consensus 104 tVp~~~~~~w~~~~----~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~~~~~~ 175 (276)
|||+++ .|.++| +++|++||||+ ||++++++.|++.|++.+.+++++|.|+|++|||.| .|+++++++..
T Consensus 78 ~Vp~~~--~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~ 155 (447)
T TIGR01887 78 VVPAGD--GWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKELGLKLKKKIRFIFGTDEETGWACIDYYFEHEE 155 (447)
T ss_pred CCCCCC--CCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCcHhHHHHHHhcC
Confidence 999865 585543 45899999987 899999999999999888778999999999999998 68888887632
Q ss_pred CC----CCcE---EEEEec----------------------cCCCCcccEE--eeccceee-------------------
Q 023838 176 LG----DSEA---IFGMHI----------------------DVGIPTGSIA--SISGPHLA------------------- 205 (276)
Q Consensus 176 ~~----~~d~---~i~~~~----------------------~~~~p~~~~~--~~~~~~~~------------------- 205 (276)
.. ..|. +++.+. ..++|++.+. ......++
T Consensus 156 ~~~~~~~~d~~~~~~~~e~g~~~~~~~v~g~~~~~~~i~~~~~Ge~tn~~p~~a~~~v~~~~~~~~~~~~~~~~~~~~~~ 235 (447)
T TIGR01887 156 APDIGFTPDAEFPIIYGEKGIVTLEISFKDDTEGDVVLESFKAGEAFNMVPDHATAVISGKELLEVEKEKFVFFIAKELE 235 (447)
T ss_pred CCCEEEeCCCCcceEEEecCeEEEEEEeccCCCCceeEEEEeCCCcCCccCcceEEEEeccchhHHHHHHHHHhhhcCcc
Confidence 11 0121 221111 1234444320 00011122
Q ss_pred eEE-----EEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHH--HhHhhc--------------------c-CC-CCCce
Q 023838 206 ATS-----VFNVKVEGRGGHAAMPHSTIDPILTASSVILALQ--QLISRE--------------------A-DP-LQSLV 256 (276)
Q Consensus 206 G~~-----~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~--~~~~~~--------------------~-~~-~~~~~ 256 (276)
|.. +++|+++|+++|||.|+.|.|||+.+++++..++ +...+. . ++ .+.++
T Consensus 236 g~~~~~~~~~~i~v~G~~aHss~p~~G~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t 315 (447)
T TIGR01887 236 GSFEVNDGTATITLEGKSAHGSAPEKGINAATYLALFLAQLNLAGGAKAFLQFLAEYLHEDHYGEKLGIDFHDDVSGDLT 315 (447)
T ss_pred eEEEecCCEEEEEEEeeecccCCCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCccccCCCcccCCCcCCcE
Confidence 555 7999999999999999999999999999999986 221110 0 11 24678
Q ss_pred EEEEEEEee
Q 023838 257 CLSLLLSIY 265 (276)
Q Consensus 257 i~~~~i~~g 265 (276)
+|+|.|++|
T Consensus 316 ~nvg~I~~g 324 (447)
T TIGR01887 316 MNVGVIDYE 324 (447)
T ss_pred EEEEEEEEe
Confidence 999999987
No 56
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=99.97 E-value=1.6e-29 Score=233.96 Aligned_cols=218 Identities=16% Similarity=0.141 Sum_probs=167.4
Q ss_pred HHHHHHHHhhhCC----------CCCCcHHHHHHHHHHHHHhcCCCeeeccCCceEEEEEcCC-C-CceEEEeeccccCC
Q 023838 39 WLVSVRRQIHENP----------ELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSG-S-RPVVVLRADMDALP 106 (276)
Q Consensus 39 ~~~~~~~~l~~ip----------s~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~-~-~~~i~l~~H~DtVp 106 (276)
++++.+..|-++- +.+++|.++++||.++|+++|++++++ ...|+++++++. + +|+|+|+||+||||
T Consensus 11 ~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~l~~~G~~v~~~-~~gNl~a~~~g~~~~~~~l~~~~H~DtVp 89 (414)
T PRK12891 11 RLWASLERMAQIGATPKGGVCRLALTDGDREARDLFVAWARDAGCTVRVD-AMGNLFARRAGRDPDAAPVMTGSHADSQP 89 (414)
T ss_pred HHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEEC-CCCCEEEEecCCCCCCCeEEEEecccCCC
Confidence 5666666666652 234578999999999999999999875 567999999664 2 59999999999999
Q ss_pred CcCCCCCccccccCCeeecCCccHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc------ccHHHH----------
Q 023838 107 LQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG------AGAFHM---------- 170 (276)
Q Consensus 107 ~~~~~~w~~~~~~~g~l~g~G~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g------~g~~~~---------- 170 (276)
++ | ..++|+++++++.|++.|++.+.+++++|.|++++|||++ .|+..+
T Consensus 90 ~g------------g---~~D~k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE~~~f~~~~~Gs~~~~g~~~~~~~~ 154 (414)
T PRK12891 90 TG------------G---RYDGIYGVLGGLEVVRALNDAGIETERPVDVVIWTNEEGSRFAPSMVGSGVFFGVYPLEYLL 154 (414)
T ss_pred CC------------c---cccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEecccccCcCCcccccHHHHhCCCCHHHHH
Confidence 74 2 1367899999999999999998889999999999999985 366533
Q ss_pred --------------HHcCCC-------CCCcEEEEEeccCC---CCcccEEeeccceeeeEEEEEEEEEccCCCcC-CCC
Q 023838 171 --------------IKEGAL-------GDSEAIFGMHIDVG---IPTGSIASISGPHLAATSVFNVKVEGRGGHAA-MPH 225 (276)
Q Consensus 171 --------------~~~~~~-------~~~d~~i~~~~~~~---~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~-~p~ 225 (276)
.+.|+. ++.++.+.+|.+++ ++.+. ...+.++++|..+++|+++|+++|+| .|+
T Consensus 155 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~e~h~e~g~vle~~~~-~~~iv~~~kG~~~~~v~v~Gk~aHa~~~P~ 233 (414)
T PRK12891 155 SRRDDTGRTLGEHLARIGYAGAEPVGGYPVHAAYELHIEQGAILERAGK-TIGVVTAGQGQRWYEVTLTGVDAHAGTTPM 233 (414)
T ss_pred hccCCCCCCHHHHHHHCCCCcccccccCCCCEEEEEEeCCCHHHHHCCC-cEEEEeeccCcEEEEEEEEeECCCCCCCCc
Confidence 344431 12345566666554 12231 11233568899999999999999998 686
Q ss_pred -CCCcHHHHHHHHHHHHHHhHhhccCCCCCceEEEEEEEeeCCccccCCCCC
Q 023838 226 -STIDPILTASSVILALQQLISREADPLQSLVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 226 -~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~~~i~~g~~~~nvIP~~a 276 (276)
.|+|||..+++++..|+++..+. ..+.++|+|.|+||+.+.|+||++|
T Consensus 234 ~~g~nAI~~aa~~i~~l~~~~~~~---~~~~t~~vg~I~gG~~~~NvVP~~~ 282 (414)
T PRK12891 234 AFRRDALVGAARMIAFLDALGRRD---APDARATVGMIDARPNSRNTVPGEC 282 (414)
T ss_pred ccccCHHHHHHHHHHHHHHHHHhc---CCCeEEEEEEEEeeCCCcceECCeE
Confidence 58999999999999999876532 1357999999999746899999975
No 57
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=99.97 E-value=7.6e-29 Score=229.41 Aligned_cols=217 Identities=18% Similarity=0.233 Sum_probs=162.9
Q ss_pred HHHHHHHHHhhhCC---------CCCCcHHHHHHHHHHHHHhcCCCeeeccCCceEEEEEcCC--CCceEEEeeccccCC
Q 023838 38 DWLVSVRRQIHENP---------ELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSG--SRPVVVLRADMDALP 106 (276)
Q Consensus 38 ~~~~~~~~~l~~ip---------s~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~--~~~~i~l~~H~DtVp 106 (276)
+++++.+.+|.+|| |.+++|.++++||.++|+++|+++++. .+.|+++++++. ++|+|+|+||+||||
T Consensus 9 ~~~~~~~~~~~~i~~~~~~~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~-~~~nlia~~~g~~~~~~~l~~~~H~DtVp 87 (414)
T PRK12890 9 ERLLARLEELAAIGRDGPGWTRLALSDEERAARALLAAWMRAAGLEVRRD-AAGNLFGRLPGRDPDLPPLMTGSHLDTVP 87 (414)
T ss_pred HHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEEc-CCCcEEEEeCCCCCCCCEEEEeCcccCCC
Confidence 45666666676655 778899999999999999999999875 467999999754 358999999999999
Q ss_pred CcCCCCCccccccCCeeecCCccHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc------ccHHHHHHc-------
Q 023838 107 LQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG------AGAFHMIKE------- 173 (276)
Q Consensus 107 ~~~~~~w~~~~~~~g~l~g~G~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g------~g~~~~~~~------- 173 (276)
++ |. .++|+++++++.+++.|++.+..++++|.|++++|||++ .|++.+.+.
T Consensus 88 ~~------------g~---~D~~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~G~~~~~~~~~~~~~~ 152 (414)
T PRK12890 88 NG------------GR---YDGILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVRFGPSMIGSRALAGTLDVEAVL 152 (414)
T ss_pred CC------------CC---cCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEecccccccCCccccHHHHHcccChHHHH
Confidence 73 22 355778999999999999888778999999999999973 466554332
Q ss_pred -----------------CCCCCCcEEE-------------EEeccCCC---CcccEEeeccceeeeEEEEEEEEEccCCC
Q 023838 174 -----------------GALGDSEAIF-------------GMHIDVGI---PTGSIASISGPHLAATSVFNVKVEGRGGH 220 (276)
Q Consensus 174 -----------------~~~~~~d~~i-------------~~~~~~~~---p~~~~~~~~~~~~~G~~~~~i~~~G~~~H 220 (276)
|. ..|.+. .+|.+.+. +.+. ......+++|..+++|+++|+++|
T Consensus 153 ~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~ep~~~~~~~~~h~~~g~~~~~~~~-~~~i~~~~kG~~~~~i~v~Gk~aH 229 (414)
T PRK12890 153 ATRDDDGTTLAEALRRIGG--DPDALPGALRPPGAVAAFLELHIEQGPVLEAEGL-PIGVVTAIQGIRRQAVTVEGEANH 229 (414)
T ss_pred hccCCCCCCHHHHHHHcCC--ChhhccccccCCCCccEEEEEeeCcCHHHHhCCC-ceEEEEeecCcEEEEEEEEEECCC
Confidence 21 122212 22221110 0111 112234688999999999999999
Q ss_pred cC-CCCC-CCcHHHHHHHHHHHHHHhHhhccCCCCCceEEEEEEEeeCCccccCCCCC
Q 023838 221 AA-MPHS-TIDPILTASSVILALQQLISREADPLQSLVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 221 s~-~p~~-g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~~~i~~g~~~~nvIP~~a 276 (276)
+| .|+. +.|||..+++++.+|+++..+.. .+.++++|.|++|+.+.|+||++|
T Consensus 230 as~~P~~~g~nAI~~~~~~i~~l~~~~~~~~---~~~~~~~g~i~~gg~~~NvIP~~a 284 (414)
T PRK12890 230 AGTTPMDLRRDALVAAAELVTAMERRARALL---HDLVATVGRLDVEPNAINVVPGRV 284 (414)
T ss_pred CCcCChhhccCHHHHHHHHHHHHHHHHHhcC---CCeEEEEEEEEECCCCceEECCeE
Confidence 98 5865 47999999999999998764322 467899999998657999999976
No 58
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=99.96 E-value=7.9e-28 Score=221.73 Aligned_cols=205 Identities=18% Similarity=0.245 Sum_probs=157.2
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCeeeccCCceEEEEEcCC-C-CceEEEeeccccCCCcCCCCCccccccCCeeecCCcc
Q 023838 52 ELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSG-S-RPVVVLRADMDALPLQELVEWEHKSKIDGKMHACGHD 129 (276)
Q Consensus 52 s~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~-~-~~~i~l~~H~DtVp~~~~~~w~~~~~~~g~l~g~G~k 129 (276)
|+|++|.++++||+++|+++|++++.+ ...|+++++++. + +|.|+|+||+||||.+ |+.+|+
T Consensus 25 ~~~~~e~~~~~~l~~~~~~~G~~~~~~-~~~nl~a~~~g~~~~~~~l~~~~H~DtV~~g------------g~~dg~--- 88 (401)
T TIGR01879 25 ALSPEDREAQDLFKKRMRAAGLEVRFD-EVGNLIGRKEGTEPPLEVVLSGSHIDTVVNG------------GNFDGQ--- 88 (401)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEe-cCCcEEEEecCCCCCCCEEEEecccccCCCC------------CccCCH---
Confidence 346789999999999999999998865 568999999754 3 4899999999999963 444554
Q ss_pred HHHHHHHHHHHHHHhccCCCCceEEEEEecCCCc-----c-ccHHHHHHcC-------------C----------C----
Q 023838 130 VHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEG-----G-AGAFHMIKEG-------------A----------L---- 176 (276)
Q Consensus 130 g~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~-----g-~g~~~~~~~~-------------~----------~---- 176 (276)
.++++++.+++.|++.+.+++++|.|++++|||+ + .|++.+.... . .
T Consensus 89 ~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~~~~Gs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~ 168 (401)
T TIGR01879 89 LGVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFPYGMWGSRNMVGLANPEDVRNICDAKGISFAEAMKACGPDLPN 168 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCcccccccHHHHhcccchhHHHhCcCCCCCCHHHHHHHcCCCccc
Confidence 3689999999999999888999999999999996 3 5787775321 0 0
Q ss_pred ------CCCcEEEEEeccCCCC---cccEEeeccceeeeEEEEEEEEEccCCCcCC-CC-CCCcHHHHHHHHHHHHHHhH
Q 023838 177 ------GDSEAIFGMHIDVGIP---TGSIASISGPHLAATSVFNVKVEGRGGHAAM-PH-STIDPILTASSVILALQQLI 245 (276)
Q Consensus 177 ------~~~d~~i~~~~~~~~p---~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~-p~-~g~nAi~~~~~~i~~l~~~~ 245 (276)
.+.++.+.+|++++.- .|. ...+..+++|..+++|+++|+++|++. |+ .+.||+..+++++.+|+++.
T Consensus 169 ~~~~~~~~~~~~~e~Hieqg~~l~~~g~-~~~v~~~~~G~~~~~i~v~G~~aHa~~~p~~~g~nAi~~aa~~i~~l~~l~ 247 (401)
T TIGR01879 169 QPLRPRGDIKAYVELHIEQGPVLESNGQ-PIGVVNAIAGQRWYKVTLNGESNHAGTTPMSLRRDPLVAASRIIHQVEEKA 247 (401)
T ss_pred ccccccccccEEEEEEEcCCcChhhCCC-eEEEEEEecCcEEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHH
Confidence 0123345555554421 121 122345688999999999999999984 54 57899999999999999876
Q ss_pred hhccCCCCCceEEEEEEEeeCCccccCCCCC
Q 023838 246 SREADPLQSLVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 246 ~~~~~~~~~~~i~~~~i~~g~~~~nvIP~~a 276 (276)
.+. ..+.+.++|.|++|+.+.|+||++|
T Consensus 248 ~~~---~~~~~~~vg~i~~g~~~~NvVP~~a 275 (401)
T TIGR01879 248 KRM---GDPTVGTVGKVEARPNGVNVIPGKV 275 (401)
T ss_pred Hhc---CCCeEEEEEEEEecCCceEEECCEE
Confidence 542 1245789999998656899999975
No 59
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=99.95 E-value=8.3e-26 Score=216.80 Aligned_cols=221 Identities=16% Similarity=0.202 Sum_probs=169.9
Q ss_pred HHHHHHHHHhhhCCCC-------------CCcHHHHHHHHHHHHHhcCCC-eeeccCCceEEEEEcCC--CCceEEEeec
Q 023838 38 DWLVSVRRQIHENPEL-------------LFEEHNTSALIRRELDKLGIP-YAYPVAKTGIVAQIGSG--SRPVVVLRAD 101 (276)
Q Consensus 38 ~~~~~~~~~l~~ips~-------------s~~e~~~~~~l~~~l~~~G~~-~~~~~~~~nvia~~~~~--~~~~i~l~~H 101 (276)
+++++.+..|.+|+.+ |..+.++++|+.++|+++|++ ++.+ ..+|+++++++. +.|+|++.+|
T Consensus 181 ~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~Gl~~v~~D-~~gNv~~~~~g~~~~~p~v~~gSH 259 (591)
T PRK13799 181 ADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAGFDEVEID-AVGNVVGRYKAADDDAKTLITGSH 259 (591)
T ss_pred HHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCCeEeEC-CCCCEEEEcCCCCCCCCeEEEecc
Confidence 4677788888888632 123578999999999999998 8875 568999999764 3699999999
Q ss_pred cccCCCcCCCCCccccccCCeeecCCccHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCc-----c-ccHHHHH----
Q 023838 102 MDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEG-----G-AGAFHMI---- 171 (276)
Q Consensus 102 ~DtVp~~~~~~w~~~~~~~g~l~g~G~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~-----g-~g~~~~~---- 171 (276)
+||||. +|+.+|+ .|+++++.+++.|++.+..++++|.|+...+||+ + .|++.+.
T Consensus 260 lDTV~~------------gG~~DG~---~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~~EEg~rF~~~~~GS~~~~G~~~ 324 (591)
T PRK13799 260 YDTVRN------------GGKYDGR---EGIFLAIACVKELHEQGERLPFHFEVIAFAEEEGQRFKATFLGSGALIGDFN 324 (591)
T ss_pred ccccCC------------CCccccH---HHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCccCCCccccchHHHhCCCh
Confidence 999985 3777887 4799999999999999999999999999999997 2 4555554
Q ss_pred ----H----cCC----------C------------CCCcEEEEEeccCCCCccc--EEeeccceeeeEEEEEEEEEccCC
Q 023838 172 ----K----EGA----------L------------GDSEAIFGMHIDVGIPTGS--IASISGPHLAATSVFNVKVEGRGG 219 (276)
Q Consensus 172 ----~----~~~----------~------------~~~d~~i~~~~~~~~p~~~--~~~~~~~~~~G~~~~~i~~~G~~~ 219 (276)
+ +|. + .++++.+.+|+++|.-... ..+.+.++++|..+++|+++|+++
T Consensus 325 ~~~~~~~d~~G~~~~~~l~~~g~~~~~~~~~~~~~~~~~a~~ElHIEQgp~Le~~~~~igvV~g~~G~~~~~Itv~Gkaa 404 (591)
T PRK13799 325 MELLDIKDADGISLREAIQHAGHCIDAIPKIARDPADVLGFIEVHIEQGPVLLELDIPLGIVTSIAGSARYICEFIGMAS 404 (591)
T ss_pred HHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEEeCCCHHHHHCCCcEEEEeeeccceEEEEEEEEECC
Confidence 1 121 0 1455778888877621110 111223467899999999999999
Q ss_pred CcCC-CC-CCCcHHHHHHHHHHHHHHhHhhccCCCCCceEEEEEEEeeCCccccCCCCC
Q 023838 220 HAAM-PH-STIDPILTASSVILALQQLISREADPLQSLVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 220 Hs~~-p~-~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~~~i~~g~~~~nvIP~~a 276 (276)
|+|. |. .+.||+..+++++..++++..+. +....++++|.|++++++.|+||++|
T Consensus 405 Hag~~Pm~~r~dAi~aaa~ii~~l~~~~~~~--~~~~~v~tVG~I~~~~ga~NvIP~~a 461 (591)
T PRK13799 405 HAGTTPMDMRKDAAAAAAEIALYIEKRAAQD--QHASLVATMGQLNVPSGSTNVIPGRC 461 (591)
T ss_pred CCCCCChhhchhHHHHHHHHHHHHHHHHHhc--CCCCcEEEEEEEEecCCCCceECCEE
Confidence 9994 64 47899999999999999876542 22346889999997545899999975
No 60
>PRK08554 peptidase; Reviewed
Probab=99.94 E-value=6.8e-26 Score=210.73 Aligned_cols=199 Identities=20% Similarity=0.236 Sum_probs=139.9
Q ss_pred HHHHHHHHhhhCCCCCCc------HHHHHHHHHHHHHhcCCCeeecc--CCceEEEEEcCCCCceEEEeeccccCCCcCC
Q 023838 39 WLVSVRRQIHENPELLFE------EHNTSALIRRELDKLGIPYAYPV--AKTGIVAQIGSGSRPVVVLRADMDALPLQEL 110 (276)
Q Consensus 39 ~~~~~~~~l~~ips~s~~------e~~~~~~l~~~l~~~G~~~~~~~--~~~nvia~~~~~~~~~i~l~~H~DtVp~~~~ 110 (276)
++++++++|++|||.+.. +.++++|+.++|+++|+++++.+ +++|+++.++.+ .|+|+|+||+||||+++
T Consensus 2 ~~~~~l~~LV~i~S~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~l~~~~~~~-~~~l~l~gH~DtVp~~~- 79 (438)
T PRK08554 2 DVLELLSSLVSFETVNDPSKGIKPSKECPKFIKDTLESWGIESELIEKDGYYAVYGEIGEG-KPKLLFMAHFDVVPVNP- 79 (438)
T ss_pred hHHHHHHHHhCCCCCCCcccCcchHHHHHHHHHHHHHHCCCeEEEEecCCceEEEEEeCCC-CCEEEEEeccccCCCCc-
Confidence 578899999999997643 58899999999999999986532 457999998533 48899999999999864
Q ss_pred CCCc---ccc-ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHHHHcC--CCCCCc
Q 023838 111 VEWE---HKS-KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEG--ALGDSE 180 (276)
Q Consensus 111 ~~w~---~~~-~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~~~~~--~~~~~d 180 (276)
..|. |.+ ++||++||||+ ||++++++.|++.|++. .++++|.|+|++|||.| .+..++++.. ...+.|
T Consensus 80 ~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~--~~~~~i~l~~~~dEE~g~~~~~~~~~~~~~~~~~~~ 157 (438)
T PRK08554 80 EEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKE--PLNGKVIFAFTGDEEIGGAMAMHIAEKLREEGKLPK 157 (438)
T ss_pred cccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccCccccHHHHHHHHhcCCCCC
Confidence 3475 443 46899999995 99999999999999764 36789999999999987 3444655431 112478
Q ss_pred EEEEEeccCCCCcccEEeeccce-----------eeeE---EEEEEEEEccC-CCcCCCCCCCc--HHHHHHHHHHHHHH
Q 023838 181 AIFGMHIDVGIPTGSIASISGPH-----------LAAT---SVFNVKVEGRG-GHAAMPHSTID--PILTASSVILALQQ 243 (276)
Q Consensus 181 ~~i~~~~~~~~p~~~~~~~~~~~-----------~~G~---~~~~i~~~G~~-~Hs~~p~~g~n--Ai~~~~~~i~~l~~ 243 (276)
++|+.++....+. +..+.|.. ..|. .++.+++.|.+ +|++.|..|.| |+..+++++.++..
T Consensus 158 ~~iv~Ept~~~~~--~~~~kg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Ha~~~~~g~~~~~i~~~~~~~~~~~~ 235 (438)
T PRK08554 158 YMINADGIGMKPI--IRRRKGFGVTIRVPSEKVKVKGKLREQTFEIRTPVVETRHAAYFLPGVDTHPLIAASHFLRESNV 235 (438)
T ss_pred EEEEeCCCCCcch--hhcCCceEEEEEecccccccccceeeeeeceeecccCccccccccCCcCchHHHHHHHHHhhcCc
Confidence 8888543221110 00010000 0122 35555566665 99998777665 57778777766653
No 61
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=99.94 E-value=3.4e-25 Score=204.29 Aligned_cols=220 Identities=13% Similarity=0.140 Sum_probs=165.2
Q ss_pred HHHHHHHHHhhhC-CCC---------CCcHHHHHHHHHHHHHhcCCCeeeccCCceEEEEEcCC--CCceEEEeeccccC
Q 023838 38 DWLVSVRRQIHEN-PEL---------LFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSG--SRPVVVLRADMDAL 105 (276)
Q Consensus 38 ~~~~~~~~~l~~i-ps~---------s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~--~~~~i~l~~H~DtV 105 (276)
+++++.+.+|-+| ..+ |.++.++++|+.++|+++|++++.+ ..+|+++++++. +.|+|++.+|+|||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~g~~R~~~s~~~~~a~~~~~~~~~~~Gl~v~~D-~~gN~~~~~~g~~~~~~~i~~gsHlDtv 81 (406)
T TIGR03176 3 KHFRQAIEELSSFGADPAGGMTRLLYSPEWLAAQQQFKKRMAESGLETRFD-DVGNLYGRLVGTEFPEETILTGSHIDTV 81 (406)
T ss_pred HHHHHHHHHHhccCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCEEEEc-CCCcEEEEecCCCCCCCeEEEeccccCC
Confidence 4566667777666 222 2357899999999999999998775 568999999764 35999999999999
Q ss_pred CCcCCCCCccccccCCeeecCCccHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc------ccHHHHHH-------
Q 023838 106 PLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG------AGAFHMIK------- 172 (276)
Q Consensus 106 p~~~~~~w~~~~~~~g~l~g~G~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g------~g~~~~~~------- 172 (276)
|.+ |+..| ..|+++.+++++.|++.+..++++|.+++..+||++ .|++.+..
T Consensus 82 ~~g------------G~~dg---~~Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~EEg~rf~~~~~Gs~~~~g~~~~~~~ 146 (406)
T TIGR03176 82 VNG------------GNLDG---QFGALAAWLAVDYLKEKYGAPLRTVEVLSMAEEEGSRFPYVFWGSKNIFGLAKPEDV 146 (406)
T ss_pred CCC------------CccCc---hhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccCccCCcccccHHHHhCCCCHHHH
Confidence 963 22222 246999999999999998899999999999999973 35555541
Q ss_pred -----------------cCC--------CCCCcEEEEEeccCCCCcc--cEEeeccceeeeEEEEEEEEEccCCCcCCCC
Q 023838 173 -----------------EGA--------LGDSEAIFGMHIDVGIPTG--SIASISGPHLAATSVFNVKVEGRGGHAAMPH 225 (276)
Q Consensus 173 -----------------~~~--------~~~~d~~i~~~~~~~~p~~--~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~ 225 (276)
.|+ ..++++.+.+|.++|.-.. ...+-..++++|..+++|+++|+++|+|.|.
T Consensus 147 ~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~elHieqG~~Le~~g~~igiv~~~~G~~~~~v~v~GkaaHag~~p 226 (406)
T TIGR03176 147 RTIEDAKGIKFVDAMHACGFDLRKAPTVRDDIKAFVELHIEQGCVLESEGQSIGVVNAIVGQRRYTVNLKGEANHAGTTP 226 (406)
T ss_pred HhCcCCCCCCHHHHHHHcCCCcccccccccccceEEEEEECCCcchHHCCCeEEEEeecccceEEEEEEEEECCCCCCCC
Confidence 111 0145678888987653221 1112223567899999999999999999654
Q ss_pred C--CCcHHHHHHHHHHHHHHhHhhccCCCCCceEEEEEEEeeCCccccCCCCC
Q 023838 226 S--TIDPILTASSVILALQQLISREADPLQSLVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 226 ~--g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~~~i~~g~~~~nvIP~~a 276 (276)
. +.||+..+++++..++++..+. ..+.++|+|.|++|+++.|+||++|
T Consensus 227 ~~~r~dAi~aaa~~i~~l~~~~~~~---~~~~~~tvG~I~~gg~~~NvIP~~a 276 (406)
T TIGR03176 227 MSYRRDTVYAFSRICTQSIERAKEI---GDPLVLTFGKVEPVPNTVNVVPGET 276 (406)
T ss_pred cccccCHHHHHHHHHHHHHHHHHhc---CCCcEEEEEEEEEcCCceEEECCeE
Confidence 4 3799999999999998865431 2356899999996557999999975
No 62
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=99.94 E-value=2.3e-25 Score=213.94 Aligned_cols=218 Identities=12% Similarity=0.121 Sum_probs=164.8
Q ss_pred HHHHHHHHHhhhCCCCC-------------CcHHHHHHHHHHHHHhcCC-CeeeccCCceEEEEEcCC-C-CceEEEeec
Q 023838 38 DWLVSVRRQIHENPELL-------------FEEHNTSALIRRELDKLGI-PYAYPVAKTGIVAQIGSG-S-RPVVVLRAD 101 (276)
Q Consensus 38 ~~~~~~~~~l~~ips~s-------------~~e~~~~~~l~~~l~~~G~-~~~~~~~~~nvia~~~~~-~-~~~i~l~~H 101 (276)
+++++.+..|-+|+.++ ..+.++++||.++|+++|+ +++.+ ..+|+++++++. + .|+|++.+|
T Consensus 181 ~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~Gl~~v~~D-~~GNl~~~~~g~~~~~~~v~~gsH 259 (591)
T PRK13590 181 NDVWDWAERLAAHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCGFDEVHID-AVGNVVGRYKGSTPQAKRLLTGSH 259 (591)
T ss_pred HHHHHHHHHHhcccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcCCCeeeEC-CCCCEEEEecCCCCCCCeEEEecc
Confidence 46677788888876532 2457899999999999999 77764 568999999763 3 489999999
Q ss_pred cccCCCcCCCCCccccccCCeeecCCccHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc------ccHHH------
Q 023838 102 MDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG------AGAFH------ 169 (276)
Q Consensus 102 ~DtVp~~~~~~w~~~~~~~g~l~g~G~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g------~g~~~------ 169 (276)
+||||.+ |+.+|+ +|+++++.+++.|++.+..++++|.|++++|||++ .|++.
T Consensus 260 lDTV~~g------------G~~DG~---~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~~EEg~rF~~~~~GS~~~~G~~~ 324 (591)
T PRK13590 260 YDTVRNG------------GKYDGR---LGIFVPMACVRELHRQGRRLPFGLEVVGFAEEEGQRYKATFLGSGALIGDFD 324 (591)
T ss_pred cccCCCC------------CCcccH---HHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCccccCCccccchHHHhCCCh
Confidence 9999963 555555 58999999999999998888899999999999972 35553
Q ss_pred --HHH---------------cCC-----------CCCCcEEEEEeccCCCC---cccEEeeccceeeeEEEEEEEEEccC
Q 023838 170 --MIK---------------EGA-----------LGDSEAIFGMHIDVGIP---TGSIASISGPHLAATSVFNVKVEGRG 218 (276)
Q Consensus 170 --~~~---------------~~~-----------~~~~d~~i~~~~~~~~p---~~~~~~~~~~~~~G~~~~~i~~~G~~ 218 (276)
+++ .|+ .+++.+.+.+|.+++.- .+. .....++++|..+++|+++|++
T Consensus 325 ~~~~~~~d~~g~~~~~al~~~g~~~~~~~~~~~~~~~~~a~~ElHiEqg~~Le~~~~-~~gvV~~~~G~~~~~v~v~Gka 403 (591)
T PRK13590 325 PAWLDQKDADGITMREAMQHAGLCIDDIPKLRRDPARYLGFVEVHIEQGPVLNELDL-PLGIVTSINGSVRYVGEMIGMA 403 (591)
T ss_pred HHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEEeCCCHHHHHCCC-ceEEEeeeeccEEEEEEEEeEC
Confidence 222 111 01355677888877621 110 1122346789999999999999
Q ss_pred CCcC-CCCC-CCcHHHHHHHHHHHHHHhHhhccCCCCCceEEEEEEEeeCCccccCCCCC
Q 023838 219 GHAA-MPHS-TIDPILTASSVILALQQLISREADPLQSLVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 219 ~Hs~-~p~~-g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~~~i~~g~~~~nvIP~~a 276 (276)
+|+| .|.. +.||+..+++++..++++... ...++.++|.|++++++.|+||++|
T Consensus 404 aHag~~P~~~r~dAi~aaa~~i~~l~~~~~~----~~~~v~tVG~i~~~Gg~~NVIP~~a 459 (591)
T PRK13590 404 SHAGTTPMDRRRDAAAAVAELALYVEQRAAQ----DGDSVGTVGMLEVPGGSINVVPGRC 459 (591)
T ss_pred CCCCCCCchhcccHHHHHHHHHHHHHHHHhc----CCCcEEEEEEEEECCCCCceECCEE
Confidence 9999 4655 579999999999999886432 2345789999986335999999975
No 63
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.92 E-value=1e-23 Score=185.59 Aligned_cols=214 Identities=20% Similarity=0.240 Sum_probs=167.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhCCCCCCcH------HHHHHHHHHHHHhcCCCeeec-------------cCCceEEEE
Q 023838 27 NQVMISAQQDKDWLVSVRRQIHENPELLFEE------HNTSALIRRELDKLGIPYAYP-------------VAKTGIVAQ 87 (276)
Q Consensus 27 ~~i~~~i~~~~~~~~~~~~~l~~ips~s~~e------~~~~~~l~~~l~~~G~~~~~~-------------~~~~nvia~ 87 (276)
.++.++++.+++++++.|++.++|+|+|... .++++|++++|+++|-+++.. +..+.+.++
T Consensus 5 ~~~fq~id~~~de~~~~L~e~v~iqsvs~dp~~r~~v~rm~~~~~~~l~~lG~~~~l~dlg~q~~~~g~~v~lPpvvl~~ 84 (473)
T KOG2276|consen 5 TKVFQSIDLNKDEFINTLREAVAIQSVSADPTKRLEVRRMADWLRDYLTKLGAPLELVDLGYQSLPDGQIVPLPPVVLGV 84 (473)
T ss_pred HHHHHHhhccHHHHHHHHHHHhcccccccCccccHHHHHHHHHHHHHHHHhCCceeeeecccCCCCCCcccccChhhhhc
Confidence 5688899999999999999999999998642 678999999999999766531 124567777
Q ss_pred EcCCC-CceEEEeeccccCCCcCCCCCcccc----ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEec
Q 023838 88 IGSGS-RPVVVLRADMDALPLQELVEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQP 159 (276)
Q Consensus 88 ~~~~~-~~~i~l~~H~DtVp~~~~~~w~~~~----~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~ 159 (276)
++..+ +++++++||+||+|+..+++|.++| +.+|+++|||+ ||++++.+.+++++.+.+.+++-+|.|+|.+
T Consensus 85 ~Gsdp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~~lpvnv~f~~Eg 164 (473)
T KOG2276|consen 85 LGSDPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLGIDLPVNVVFVFEG 164 (473)
T ss_pred ccCCCCcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHhCccccceEEEEEEe
Confidence 76653 6999999999999998889998775 57899999998 7999999999999999999999999999999
Q ss_pred CCCcc-ccHHHHHH---cCCCCCCcEEEEEeccCCCCcccEEeeccceeeeEEEEEEEEEc--cCCCcCCC-CCCCcHHH
Q 023838 160 AEEGG-AGAFHMIK---EGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEG--RGGHAAMP-HSTIDPIL 232 (276)
Q Consensus 160 dEE~g-~g~~~~~~---~~~~~~~d~~i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G--~~~Hs~~p-~~g~nAi~ 232 (276)
-||.| .|-..+++ +.++.++|++... +....|.-.-....+.+|...+.|+|+| +-.|||.. ..-.-|+.
T Consensus 165 mEEsgS~~L~~l~~~~kD~~~~~vD~vciS---dnyWlg~kkPcltyGlRG~~yf~i~v~g~~~DlHSGvfGG~~hE~m~ 241 (473)
T KOG2276|consen 165 MEESGSEGLDELIEKEKDKFFKDVDFVCIS---DNYWLGTKKPCLTYGLRGVIYFQIEVEGPSKDLHSGVFGGVVHEAMN 241 (473)
T ss_pred chhccCccHHHHHHHHhhhhhccCCEEEee---CceeccCCCcccccccccceeEEEEEeecccccccccccchhHHHHH
Confidence 99998 56666664 3556789987753 2333443222233456689999999999 67899943 22235666
Q ss_pred HHHHHHHHHHH
Q 023838 233 TASSVILALQQ 243 (276)
Q Consensus 233 ~~~~~i~~l~~ 243 (276)
.+..++..|.+
T Consensus 242 dL~~~ms~Lv~ 252 (473)
T KOG2276|consen 242 DLVLVMSSLVD 252 (473)
T ss_pred HHHHHHHHhcC
Confidence 66666666644
No 64
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=99.78 E-value=5.8e-18 Score=150.77 Aligned_cols=206 Identities=16% Similarity=0.153 Sum_probs=157.1
Q ss_pred HHHHHHHHHHhhhCCCCCC--cHHHHHHHHHHHHHhcCCCeee-----------cc-CCceEEEEEcCC-CCceEEEeec
Q 023838 37 KDWLVSVRRQIHENPELLF--EEHNTSALIRRELDKLGIPYAY-----------PV-AKTGIVAQIGSG-SRPVVVLRAD 101 (276)
Q Consensus 37 ~~~~~~~~~~l~~ips~s~--~e~~~~~~l~~~l~~~G~~~~~-----------~~-~~~nvia~~~~~-~~~~i~l~~H 101 (276)
++++.+++..|++.||+++ .|...+++|...|+++.+.-+. ++ ++.||+|-++++ ++++|++.||
T Consensus 7 ~e~v~~lt~~LV~~~SvtgT~GE~a~ad~l~~vL~~~pYFqehped~~~~pi~nDpygR~nv~AlVrg~~~k~tvvl~gH 86 (553)
T COG4187 7 SERVRALTLSLVSWPSVTGTPGEGAFADRLLGVLGELPYFQEHPEDLWLQPIHNDPYGRRNVFALVRGGTSKRTVVLHGH 86 (553)
T ss_pred HHHHHHHHHHHeeccccCCCcccccHHHHHHHHHhcCchhhhChHhhcccCCCCCccccceeEEEEecCCCCceEEEeec
Confidence 5889999999999999987 5788999999999998764332 11 678999999764 5699999999
Q ss_pred cccCCCcCCCCC---cccc----------------------ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceE
Q 023838 102 MDALPLQELVEW---EHKS----------------------KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTV 153 (276)
Q Consensus 102 ~DtVp~~~~~~w---~~~~----------------------~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v 153 (276)
+|||...+.... .|+| ..+++++|||+ |+|+|+.+++++.+.+. ...+|||
T Consensus 87 ~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DMKsGlav~la~L~~fa~~-~~~~GNl 165 (553)
T COG4187 87 FDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALDMKSGLAVHLACLEEFAAR-TDRQGNL 165 (553)
T ss_pred cceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhhhhhhHHHHHHHHHHhhC-CCCCCcE
Confidence 999998654322 2332 23679999987 89999999999998876 5689999
Q ss_pred EEEEecCCCcc-ccHHHHHHc--CCC--CCCcEEEEEeccCCCC--cccEEeeccceeeeEEEEEEEEEccCCCcCCCCC
Q 023838 154 RILFQPAEEGG-AGAFHMIKE--GAL--GDSEAIFGMHIDVGIP--TGSIASISGPHLAATSVFNVKVEGRGGHAAMPHS 226 (276)
Q Consensus 154 ~~~~~~dEE~g-~g~~~~~~~--~~~--~~~d~~i~~~~~~~~p--~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~~p~~ 226 (276)
.|+.++|||.- .|++..+.. ++. .+.+...+++.+...| .|.-+....++..|.+-.-.-|.|...|.|.|..
T Consensus 166 Lf~a~pdEE~~s~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~~~dGd~~ryvYtGtiGKLLp~f~vvG~etHvG~~f~ 245 (553)
T COG4187 166 LFMAVPDEEVESRGMREARPALPGLKKKFDLEYTAAINLDVTSDQGDGDQGRYVYTGTIGKLLPFFFVVGCETHVGYPFE 245 (553)
T ss_pred EEEeccchhhhcccHHHHHHHHHHHHHhhCceEEEEeccccccCCCCCccceEEEeccchhhcceeEEEeeccccCCccc
Confidence 99999999976 677766532 111 1344444444332222 2322233445666888888999999999999999
Q ss_pred CCcHHHHHHHHHHHHHH
Q 023838 227 TIDPILTASSVILALQQ 243 (276)
Q Consensus 227 g~nAi~~~~~~i~~l~~ 243 (276)
|+||-..+++++++|+-
T Consensus 246 Gvnan~maSei~~~le~ 262 (553)
T COG4187 246 GVNANFMASEITRRLEL 262 (553)
T ss_pred CCCHHHHHHHHHHHhhc
Confidence 99999999999999864
No 65
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.68 E-value=5e-15 Score=131.88 Aligned_cols=126 Identities=14% Similarity=0.191 Sum_probs=97.1
Q ss_pred HHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeec-----------c--------CCceEEEEEcCCCCceEEEeeccc
Q 023838 43 VRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYP-----------V--------AKTGIVAQIGSGSRPVVVLRADMD 103 (276)
Q Consensus 43 ~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~-----------~--------~~~nvia~~~~~~~~~i~l~~H~D 103 (276)
+...+-..++.|..|.++++||+++|+++|++++.. . ...||++.+++...+.|++.||+|
T Consensus 40 ia~~~~gR~~gS~~E~~aA~yL~~~f~~lG~~v~~q~f~~~~~~~~~~g~~~~~~~~g~nVIa~~~G~~~~~Ill~AH~D 119 (346)
T PRK10199 40 IATFFPGRMTGSPAEMLSADYLRQQFQQMGYQSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKAPQQIIIMAHLD 119 (346)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHHCCCceEeeeccccceeecccccccccCCccceEEEEECCCCCCeEEEEEEcC
Confidence 333444556667789999999999999999987531 1 125799999775458999999999
Q ss_pred cCCCcCCCCCccccccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHHHHc
Q 023838 104 ALPLQELVEWEHKSKIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKE 173 (276)
Q Consensus 104 tVp~~~~~~w~~~~~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~~~~ 173 (276)
||++.....|.+.. +| ++++|+ ++++++++.+++.|++.+ ++.+|.|+++++||.| .|+++++++
T Consensus 120 TV~p~~~~~~~~~~--~g-~~~~GA~DnasGvA~lLe~ar~l~~~~--~~~~I~fv~~~~EE~Gl~GS~~~~~~ 188 (346)
T PRK10199 120 TYAPQSDADVDANL--GG-LTLQGMDDNAAGLGVMLELAERLKNVP--TEYGIRFVATSGEEEGKLGAENLLKR 188 (346)
T ss_pred cCCCCCCCccccCC--CC-cccCCccccHHHHHHHHHHHHHHhhCC--CCCcEEEEEECCcccCcHHHHHHHHh
Confidence 99864433444321 22 566776 699999999999998653 6789999999999999 899999986
No 66
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=99.58 E-value=4.9e-14 Score=126.82 Aligned_cols=130 Identities=23% Similarity=0.285 Sum_probs=104.9
Q ss_pred HHHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeeccCCceEEEEEcCC-CCceEEEeeccccCCC--------
Q 023838 37 KDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSG-SRPVVVLRADMDALPL-------- 107 (276)
Q Consensus 37 ~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~-~~~~i~l~~H~DtVp~-------- 107 (276)
.+.+.+++++|+++||+|+.|.++++++.++|+++|++++.+ ..+|+++.+++. ++|+|+|.||+|+|..
T Consensus 2 ~~~~~~lLk~Lv~~~s~SG~E~~V~~~l~~~l~~~g~ev~~D-~~Gnlia~~~g~~~~~~v~l~aHmDevG~~V~~I~~~ 80 (343)
T TIGR03106 2 TDYLTETLLALLAIPSPTGFTDAVVRYVAERLEDLGIEYELT-RRGAIRATLPGREATPARAVVTHLDTLGAMVRELKDN 80 (343)
T ss_pred hHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCeEEEC-CCeEEEEEECCCCCCCeEEEEEeeccccceeeEECCC
Confidence 356889999999999999999999999999999999998864 689999988653 4589999999999953
Q ss_pred --------c-----------------CC-------C-----------------CCc------------------------
Q 023838 108 --------Q-----------------EL-------V-----------------EWE------------------------ 114 (276)
Q Consensus 108 --------~-----------------~~-------~-----------------~w~------------------------ 114 (276)
| +. . .|.
T Consensus 81 G~l~~~~iGG~~~~~l~g~~v~i~t~~g~~~Gvi~~~~~~~H~~~~~~~~~~~~~~~~~l~iDiG~~s~ee~~~lGV~~G 160 (343)
T TIGR03106 81 GRLELVPIGHWSARFAEGARVTIFTDSGEFRGTILPLKASGHAFNEEIDSQPTGWDHVEVRVDARASCRADLVRLGISVG 160 (343)
T ss_pred CeEEEEecCCCcccceeCCEEEEEeCCCeEEEEECCCCCCCccCChHHccCCCCCcccEEEEECCcCCHHHHHHcCCCCC
Confidence 1 00 0 111
Q ss_pred ----ccc----ccCCeeecCCc--cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCccccH
Q 023838 115 ----HKS----KIDGKMHACGH--DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGGAGA 167 (276)
Q Consensus 115 ----~~~----~~~g~l~g~G~--kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~g~ 167 (276)
|.+ ..+|+++||+. |+++++++.+++.|++.+..++.+|.++|+++||.|.|+
T Consensus 161 d~v~~~~~~~~~~~~~i~gr~~D~K~G~a~~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG~ga 223 (343)
T TIGR03106 161 DFVAFDPQPEFLANGFIVSRHLDDKAGVAALLAALKAIVEHKVPLPVDVHPLFTITEEVGSGA 223 (343)
T ss_pred CEEEECCccEEecCCEEEEEecccHHhHHHHHHHHHHHHhcCCCCCceEEEEEECCcccCccc
Confidence 000 12468888764 899999999999999877678899999999999999774
No 67
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=99.56 E-value=7e-15 Score=121.24 Aligned_cols=86 Identities=33% Similarity=0.516 Sum_probs=71.1
Q ss_pred EEeeccccCCCcCCCCCcccc----ccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-c-cH
Q 023838 97 VLRADMDALPLQELVEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-A-GA 167 (276)
Q Consensus 97 ~l~~H~DtVp~~~~~~w~~~~----~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~-g~ 167 (276)
+|++|+|||| . ...|+++| .++|++||||+ |+++++++.+++.|++.+.+++++|.|+|+++||.| . |+
T Consensus 1 ll~~H~Dtv~-~-~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~ 78 (189)
T PF01546_consen 1 LLYAHMDTVP-G-PEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGA 78 (189)
T ss_dssp EEEEES-BCS-T-GGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHH
T ss_pred CccccccccC-C-cCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhccccccccccccccccccCCCcchh
Confidence 6899999999 4 67887664 56899999997 799999999999999888899999999999999998 4 99
Q ss_pred HHHHHcCC--CCCCcEEEE
Q 023838 168 FHMIKEGA--LGDSEAIFG 184 (276)
Q Consensus 168 ~~~~~~~~--~~~~d~~i~ 184 (276)
+++++++. ..++|+++.
T Consensus 79 ~~l~~~~~~~~~~~~~~~~ 97 (189)
T PF01546_consen 79 KHLLEEGAFFGLHPDYVII 97 (189)
T ss_dssp HHHHHHCEEEEEEESEEEE
T ss_pred hhhhhhccccccccccccc
Confidence 99998842 113555554
No 68
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=99.48 E-value=1.4e-13 Score=125.50 Aligned_cols=223 Identities=16% Similarity=0.160 Sum_probs=161.8
Q ss_pred HHHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCee-ec-------cCCc---eEEEEEcCC-C-CceEEEeeccc
Q 023838 37 KDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYA-YP-------VAKT---GIVAQIGSG-S-RPVVVLRADMD 103 (276)
Q Consensus 37 ~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~-~~-------~~~~---nvia~~~~~-~-~~~i~l~~H~D 103 (276)
.+++++.+.++++||+.|++|.+++.++.++++.+|+.++ .. +... -+.+.+++. + -|++-|.+|+|
T Consensus 4 ~~~l~~~F~~~~kI~~~S~~e~~~~p~~~~~~k~~~~~v~dE~~~i~~~~~a~~~~~~~~~~L~a~~d~V~~i~~~sh~D 83 (414)
T COG2195 4 MERLLDRFLELVKIPTQSKHEKAVAPSTVGQAKLLGLLVEDELGNIGLKKPATAGENYVPAVLQAHLDMVPEIGFISHHD 83 (414)
T ss_pred hHHHHHHHHHHeeCCCCCCCccccccccHHHHHHcCchhhhhhccccccccccCCCCeeeEEeecccccccccccccccc
Confidence 5789999999999999999999999999999999999883 21 1112 244556543 2 48899999999
Q ss_pred cCCCcC----CCCC---------------------ccccc-----------cCC-eeecCCccHHHHHHHHHHHHHHhcc
Q 023838 104 ALPLQE----LVEW---------------------EHKSK-----------IDG-KMHACGHDVHTTMLLGAAKLIHQRK 146 (276)
Q Consensus 104 tVp~~~----~~~w---------------------~~~~~-----------~~g-~l~g~G~kg~~a~~l~a~~~l~~~~ 146 (276)
|+|..- ...| ...|. -+| -+-|.++|++++.++.++..+.+..
T Consensus 84 t~~d~~~~~v~~~~l~~~~Gad~i~~~~~~a~L~~~~~P~~~~~t~~~ei~~dGa~LLgaD~kAGia~i~~al~~~~~~~ 163 (414)
T COG2195 84 TVPDPIGPNVNPQILKATLGADNIGLAIGLAVLSPEHFPLEVLLTGDEEITTDGATLLGADDKAGIAEIMTALSVLREKH 163 (414)
T ss_pred ccccccccccCCceeeeccCcchhhhhhHHhhcCcccCCceeeeecceEEeccCccccCCcchhHHHHHHHHHHHHhhcC
Confidence 996210 1112 01110 122 2335555799999999999998653
Q ss_pred -CCCCceEEEEEecCCCcc-ccHHHHHHcCCCCCCcEEEEEeccCCCCcccEEeeccceeeeEEEEEEEEEccCCCcC-C
Q 023838 147 -DKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAA-M 223 (276)
Q Consensus 147 -~~~~~~v~~~~~~dEE~g-~g~~~~~~~~~~~~~d~~i~~~~~~~~p~~~~~~~~~~~~~G~~~~~i~~~G~~~Hs~-~ 223 (276)
..++++|.+.|+++||.| .|++.+.-.. + .+++.+.++ |.+.|.+... ..+...+++++.|+.+|++ .
T Consensus 164 ~~i~h~~i~~g~s~~Ee~g~rg~~~~~~a~-f-~a~~ay~iD---Gg~~g~i~~e----a~~~~~~~~~~~g~~~h~~~a 234 (414)
T COG2195 164 PEIPHGGIRGGFSPDEEIGGRGAANKDVAR-F-LADFAYTLD---GGPVGEIPRE----AFNAAAVRATIVGPNVHPGSA 234 (414)
T ss_pred ccccccCeEEEecchHHhhhhhhhhccHHh-h-hcceeEecC---CCccCeeeee----ccchheeeeeeeccCcCccch
Confidence 558999999999999998 8988877653 2 367777664 5566766543 2366789999999999998 6
Q ss_pred CCCCCcHHHHHHHHHHHHHHhHhhccCCCCCceEEEEEEEeeCCccccCCC
Q 023838 224 PHSTIDPILTASSVILALQQLISREADPLQSLVCLSLLLSIYSETCELLPL 274 (276)
Q Consensus 224 p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~~~i~~g~~~~nvIP~ 274 (276)
+...+||+..+.+++..+..... ...++.+.|..+.+ +..|.|.+
T Consensus 235 ~~~~i~a~~~a~e~~~~~~~~~~-----~e~t~~~~Gv~~~~-~~~~~V~~ 279 (414)
T COG2195 235 KGKMINALLLAAEFILELPLEEV-----PELTEGPEGVYHLG-DSTNSVEE 279 (414)
T ss_pred HHHHhhHHHhhhhhhhcCCcccc-----cccccccceEEecc-ccccchhh
Confidence 88889999998888887754211 13566778888876 68887764
No 69
>PRK09961 exoaminopeptidase; Provisional
Probab=99.42 E-value=7.1e-12 Score=113.10 Aligned_cols=142 Identities=14% Similarity=0.224 Sum_probs=107.2
Q ss_pred HHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeeccCCceEEEEEcCCCCceEEEeeccccCCCc-----CC-----
Q 023838 41 VSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVVLRADMDALPLQ-----EL----- 110 (276)
Q Consensus 41 ~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~DtVp~~-----~~----- 110 (276)
++++++|+++||+|+.|.++++++.++|+++|.+++. +..+|+++.+++.++|+|+|.||+|+|+.= +.
T Consensus 3 ~~~L~~L~~~~s~sG~E~~v~~~i~~~l~~~~~~v~~-D~~Gnvi~~~~g~~~~~v~l~aHmDevg~~V~~I~~~G~l~~ 81 (344)
T PRK09961 3 LSLLKALSEADAIASSEQEVRQILLEEADRLQKEVRF-DGLGSVLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDV 81 (344)
T ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHhhCCEEEE-CCCCCEEEEEcCCCCCEEEEEeccceeceEEEEECCCceEEE
Confidence 3679999999999999999999999999999998876 478999998865445899999999999631 00
Q ss_pred ---CCCc-------------------------------cc---------c-----------------------ccCCeee
Q 023838 111 ---VEWE-------------------------------HK---------S-----------------------KIDGKMH 124 (276)
Q Consensus 111 ---~~w~-------------------------------~~---------~-----------------------~~~g~l~ 124 (276)
.+|. ++ + ..++++.
T Consensus 82 ~~vGG~~~~~~~~~~v~i~~~~g~~i~Gvi~~~~~~~~~~~l~iDiG~~s~ee~~~~GI~~Gd~v~~~~~~~~~~~~~i~ 161 (344)
T PRK09961 82 LPVGNVRMAARQLQPVRITTREECKIPGLLNGDRQGNDVSAMRVDIGARSYDEVMQAGIRPGDRVTFDTTFQVLPHQRVM 161 (344)
T ss_pred EeCCCccccccCCCEEEEEeCCCCEeeEEEChhhcCCCHHHEEEEcCCCCHHHHHhcCCCCCCEEEEcceeEEecCCEEE
Confidence 0111 00 0 0123444
Q ss_pred cCC--ccHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHHHHcCCCCCCcEEEEEecc
Q 023838 125 ACG--HDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMHID 188 (276)
Q Consensus 125 g~G--~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~~~~~~~~~~d~~i~~~~~ 188 (276)
|+. .+.++++++.+++.+++. +++.+|+++|+..||.| .|++..... + ++|++|+++..
T Consensus 162 gkalDnR~g~~~lle~l~~l~~~--~~~~~v~~~~tvqEEvG~rGa~~aa~~--i-~pd~~I~vDv~ 223 (344)
T PRK09961 162 GKAFDDRLGCYLLVTLLRELHDA--ELPAEVWLVASSSEEVGLRGGQTATRA--V-SPDVAIVLDTA 223 (344)
T ss_pred EeechhhHhHHHHHHHHHHhhhc--CCCceEEEEEEcccccchHHHHHHHhc--c-CCCEEEEEecc
Confidence 443 257899999999988754 47899999999999999 788777554 2 47899988754
No 70
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=99.39 E-value=9.9e-12 Score=111.12 Aligned_cols=144 Identities=19% Similarity=0.295 Sum_probs=108.7
Q ss_pred HHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeeccCCceEEEEEcCCCC-ceEEEeeccccCCCc-----C--
Q 023838 38 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSR-PVVVLRADMDALPLQ-----E-- 109 (276)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~-~~i~l~~H~DtVp~~-----~-- 109 (276)
+++++++++|+.+|++||.|.++.+|++++|++++.+++++ ..+|+++++++.++ |.|++.+|||.|-.= +
T Consensus 2 ~~~~~~LkeL~~~~gpsG~E~eVr~~~~~el~~~~~ev~~D-~lGnlia~~~g~~g~~~imi~AHmDEiG~mV~~I~~~G 80 (355)
T COG1363 2 EELLELLKELLEAPGPSGYEEEVRDVLKEELEPLGDEVEVD-RLGNLIAKKGGKNGPPKVMIAAHMDEIGFMVKEIEDDG 80 (355)
T ss_pred hHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHhCCceEEc-CCCcEEEEecCCCCCccEEEEeecceeeeeEEEECCCc
Confidence 46889999999999999999999999999999999998764 67999999987433 669999999999321 0
Q ss_pred ------CCCCccc------------------------c------------------------------------------
Q 023838 110 ------LVEWEHK------------------------S------------------------------------------ 117 (276)
Q Consensus 110 ------~~~w~~~------------------------~------------------------------------------ 117 (276)
-.+|... |
T Consensus 81 ~Lr~~~IGG~~~~~~~gq~v~i~t~~g~~i~GvIg~~p~H~~~~~~~~~~~~~~~el~iDiga~skeea~~lGI~vGd~v 160 (355)
T COG1363 81 FLRFVPIGGWDPQVLEGQRVTIHTDKGKKIRGVIGSKPPHLLKEEAERKKPPEWDELFIDIGASSKEEAEELGIRVGDFV 160 (355)
T ss_pred eEEEEEcCCcChhhccCcEEEEEeCCCcEEeeeEcccCccccCccccccCCCchhhEEEECCcCCHHHHHhcCCCCCCEE
Confidence 0122100 0
Q ss_pred --------ccCCeeec--CCccHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHHHHcCCCCCCcEEEEEe
Q 023838 118 --------KIDGKMHA--CGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMH 186 (276)
Q Consensus 118 --------~~~g~l~g--~G~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~~~~~~~~~~d~~i~~~ 186 (276)
..++++-+ .+.+.++++++.+++.| + +.+++.+++++|++.||.| .|++....+ . +.|.+|.++
T Consensus 161 ~~~~~~~~l~~~~i~skalDdR~gva~lle~lk~l-~-~~~~~~~vy~v~tvqEEVGlrGA~~~a~~--i-~pd~aiavd 235 (355)
T COG1363 161 VFDPRFRELANGRVVSKALDDRAGVAALLELLKEL-K-GIELPADVYFVASVQEEVGLRGAKTSAFR--I-KPDIAIAVD 235 (355)
T ss_pred EEcCceEEecCCcEEeeeccchHhHHHHHHHHHHh-c-cCCCCceEEEEEecchhhccchhhccccc--c-CCCEEEEEe
Confidence 00122222 23368899999999999 4 6789999999999999999 677666543 2 477888776
Q ss_pred c
Q 023838 187 I 187 (276)
Q Consensus 187 ~ 187 (276)
.
T Consensus 236 ~ 236 (355)
T COG1363 236 V 236 (355)
T ss_pred c
Confidence 4
No 71
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=99.37 E-value=2.2e-11 Score=109.82 Aligned_cols=142 Identities=18% Similarity=0.197 Sum_probs=106.5
Q ss_pred HHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeeccCCceEEEEEcCC--CCceEEEeeccccCCCc-----C-----
Q 023838 42 SVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSG--SRPVVVLRADMDALPLQ-----E----- 109 (276)
Q Consensus 42 ~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~--~~~~i~l~~H~DtVp~~-----~----- 109 (276)
+++++|+++|++|+.|.+++++++++|++++.+++++ ..+|+++.+++. .+|+|+|.+|+|+|+.- +
T Consensus 2 ~~L~~L~~~~gpSG~E~~v~~~i~~~l~~~~~~v~~D-~~GNvia~~~g~~~~~~~vml~AHmDeVGf~V~~I~~~G~l~ 80 (350)
T TIGR03107 2 NKIKEVTELQGTSGFEHPIRDYLRQDITPLVDQVETD-GLGGIFGIKESQVENAPRVMVAAHMDEVGFMVSQIKPDGTFR 80 (350)
T ss_pred hHHHHHHhCCCCCCCcHHHHHHHHHHHHhhCCEEEEC-CCCCEEEEecCCCCCCCEEEEEecccEeCEEEEEECCCceEE
Confidence 5689999999999999999999999999999887764 678999988653 35899999999999421 0
Q ss_pred ---CCCCc------------------------------------------cc---------c------------------
Q 023838 110 ---LVEWE------------------------------------------HK---------S------------------ 117 (276)
Q Consensus 110 ---~~~w~------------------------------------------~~---------~------------------ 117 (276)
-.+|. ++ +
T Consensus 81 ~~~vGG~~~~~l~gq~V~i~t~~g~~i~GViG~~~~Hl~~~~~~~~~~~~~~~l~IDiGa~skee~~~~GI~vGd~v~~~ 160 (350)
T TIGR03107 81 VVELGGWNPLVVSSQRFTLFTRKGKKYPVISGSVPPHLLRGSSGGPQLPAVSDILFDGGFTNKDEAWSFGVRPGDVIVPQ 160 (350)
T ss_pred EEeCCCccccccCCcEEEEEeCCCCEEEEEEeCCcccccChhhcccccCChhhEEEEeCCCCHHHHHhcCCCCCCEEEEC
Confidence 00111 00 0
Q ss_pred -----c-cCCeeecCC--ccHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHHHHcCCCCCCcEEEEEecc
Q 023838 118 -----K-IDGKMHACG--HDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMHID 188 (276)
Q Consensus 118 -----~-~~g~l~g~G--~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~~~~~~~~~~d~~i~~~~~ 188 (276)
. .++++.|+. .+.++++++.+++.|++. +++.++.++|++.||.| +|++..... . ++|.+|+++..
T Consensus 161 ~~~~~~~~~~~i~~kalDdR~g~a~l~e~l~~l~~~--~~~~~l~~~~tvqEEvG~rGA~~aa~~--i-~pD~aI~vDv~ 235 (350)
T TIGR03107 161 TETILTANGKNVISKAWDNRYGVLMILELLESLKDQ--ELPNTLIAGANVQEEVGLRGAHVSTTK--F-NPDIFFAVDCS 235 (350)
T ss_pred CCeEEEcCCCEEEEeccccHHHHHHHHHHHHHhhhc--CCCceEEEEEEChhhcCchhhhhHHhh--C-CCCEEEEEecC
Confidence 0 012344433 358899999999999754 47899999999999999 888876544 2 57899998754
Q ss_pred C
Q 023838 189 V 189 (276)
Q Consensus 189 ~ 189 (276)
+
T Consensus 236 ~ 236 (350)
T TIGR03107 236 P 236 (350)
T ss_pred C
Confidence 3
No 72
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=99.36 E-value=2.2e-12 Score=97.35 Aligned_cols=73 Identities=18% Similarity=0.145 Sum_probs=64.9
Q ss_pred eeeeEEEEEEEEEccCCCcCCCCCCCcHHHHHHHHHHHHHHhHhhcc-----CCCCCceEEEEEEEeeCCccccCCCCC
Q 023838 203 HLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREA-----DPLQSLVCLSLLLSIYSETCELLPLKA 276 (276)
Q Consensus 203 ~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~-----~~~~~~~i~~~~i~~g~~~~nvIP~~a 276 (276)
+++|..+++|+++|+++|+|.|+.|+||+..+++++..|+++..+.. ......+++++.|++| ...|+||++|
T Consensus 2 g~~G~~~~~i~~~G~~~H~s~~~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~gG-~~~n~ip~~a 79 (111)
T PF07687_consen 2 GHRGVIWFRITITGKSGHSSRPEKGVNAIEAAARFLNALEELEFEWAFRPEEFFPGPPTLNIGSIEGG-TAPNVIPDEA 79 (111)
T ss_dssp EEEEEEEEEEEEESBSEETTSGGGSBCHHHHHHHHHHHHHHTTCHBTSTHHHCTCTSEEEEEEEEEEE-SSTTEESSEE
T ss_pred cCCCEEEEEEEEEeeccCCCCccCccCHHHHHHHHHHHHHHhhcccccccccccccccceeEeecccC-CcCCEECCEE
Confidence 47799999999999999999999999999999999999998765432 3467899999999998 6999999975
No 73
>PRK09864 putative peptidase; Provisional
Probab=99.34 E-value=4.1e-11 Score=107.95 Aligned_cols=140 Identities=16% Similarity=0.188 Sum_probs=104.6
Q ss_pred HHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeeccCCceEEEEEcCCCCceEEEeeccccCCCc-----C------
Q 023838 41 VSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVVLRADMDALPLQ-----E------ 109 (276)
Q Consensus 41 ~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~DtVp~~-----~------ 109 (276)
++++++|+++|++||.|.++++++.++|++++.++..+ ..+|+++.. +..+|+|+|.||+|+|+.- +
T Consensus 3 ~~~L~~L~~~~g~SG~E~~v~~~l~~~l~~~~dev~~D-~~GNli~~~-g~~~~kvml~AHmDevG~mV~~I~~~G~l~~ 80 (356)
T PRK09864 3 IELLQQLCEASAVSGDEQEVRDILINTLEPCVNEITFD-GLGSFVARK-GNKGPKVAVVGHMDEVGFMVTHIDESGFLRF 80 (356)
T ss_pred HHHHHHHHcCCCCCCchHHHHHHHHHHHHHhCCEEEEC-CCCCEEEEe-CCCCcEEEEEecccccCEEEEEECCCCeEEE
Confidence 46799999999999999999999999999999987764 678999986 3334799999999999521 0
Q ss_pred --CCCCc------------------cc--------------------------------c--------------------
Q 023838 110 --LVEWE------------------HK--------------------------------S-------------------- 117 (276)
Q Consensus 110 --~~~w~------------------~~--------------------------------~-------------------- 117 (276)
-.+|. +. +
T Consensus 81 ~~lGG~~~~~l~~q~V~i~t~~g~~v~GVig~~~~H~~~~~~~~k~~~~~~l~IDiGa~s~ee~~~~GV~vGD~v~~~~~ 160 (356)
T PRK09864 81 TTIGGWWNQSMLNHRVTIRTHKGVKIPGVIGSVAPHALTEKQKQQPLSFDEMFIDIGANSREEVEKRGVEIGDFISPEAN 160 (356)
T ss_pred EeCCCcCccccCCCEEEEEeCCCCEEEEEEeCCccccCChhHcccCCChhHEEEEeCCCCHHHHHhcCCCCCCEEEECCC
Confidence 01121 00 0
Q ss_pred ---ccCCeeecCC--ccHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHHHHcCCCCCCcEEEEEeccC
Q 023838 118 ---KIDGKMHACG--HDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMHIDV 189 (276)
Q Consensus 118 ---~~~g~l~g~G--~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~~~~~~~~~~d~~i~~~~~~ 189 (276)
..++++.|+. .+.++++++.+++.|++ ++.+++++|++.||.| +||+..... . ++|.+|+++..+
T Consensus 161 ~~~l~~~~i~~kalDnR~g~~~lle~l~~l~~----~~~~vy~v~TvQEEvGlrGA~~aa~~--i-~PDiaIavDvt~ 231 (356)
T PRK09864 161 FACWGEDKVVGKALDNRIGCAMMAELLQTVNN----PEITLYGVGSVEEEVGLRGAQTSAEH--I-KPDVVIVLDTAV 231 (356)
T ss_pred cEEEcCCEEEEEeCccHHHHHHHHHHHHHhhc----CCCeEEEEEEcchhcchHHHHHHHhc--C-CCCEEEEEeccc
Confidence 0012333332 35789999999988854 7899999999999999 888887654 2 478999887543
No 74
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.56 E-value=5.8e-07 Score=87.58 Aligned_cols=132 Identities=20% Similarity=0.308 Sum_probs=90.8
Q ss_pred HHHHHHHHHhhhC-CCC--CC-cHHHHHHHHHHHHHhcCC-------Ceeec-----------------cCCceEEEEEc
Q 023838 38 DWLVSVRRQIHEN-PEL--LF-EEHNTSALIRRELDKLGI-------PYAYP-----------------VAKTGIVAQIG 89 (276)
Q Consensus 38 ~~~~~~~~~l~~i-ps~--s~-~e~~~~~~l~~~l~~~G~-------~~~~~-----------------~~~~nvia~~~ 89 (276)
++.++.+.++.++ |.+ |. +|..+.+|+.+++.+..= +.+.+ .+-.|++.+++
T Consensus 57 ~rA~~~l~~ls~~G~~~~gS~~ne~~a~~~il~e~~~i~~~~~~~~~~~Evd~q~~sg~~~~~~~~~~Y~~i~NIvVki~ 136 (834)
T KOG2194|consen 57 ARALKDLLSLSAAGPHPVGSDNNEMHASSFILKEVNKIRKGSQSDLYDMEVDLQSASGSFILEGMTLVYQNISNIVVKIS 136 (834)
T ss_pred HHHHHHHHHHHhcCCcccCchhhHHHHHHHHHHHHHHHHhhhhcchhhheeceeeccceeeehhhhheeeeeeeEEEecC
Confidence 4555666666665 444 43 456788888888765421 11111 12358999985
Q ss_pred CC--C-CceEEEeeccccCCCcCCCCCccccccCCeeecCCcc-HHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-
Q 023838 90 SG--S-RPVVVLRADMDALPLQELVEWEHKSKIDGKMHACGHD-VHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG- 164 (276)
Q Consensus 90 ~~--~-~~~i~l~~H~DtVp~~~~~~w~~~~~~~g~l~g~G~k-g~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g- 164 (276)
++ . +-.|++++|+|+||.+ +|.|.+ .++|++|++++.+.+.+..+..+|+|+|...||.+
T Consensus 137 ~k~~~~~~~lLlnaHfDSvpt~---------------~gAtDDg~~va~mLe~lRv~s~~~~~l~~~vVFLfNgaEE~~L 201 (834)
T KOG2194|consen 137 PKNGNDKNALLLNAHFDSVPTG---------------PGATDDGSGVASMLEALRVLSKSDKLLTHSVVFLFNGAEESGL 201 (834)
T ss_pred CCCCCccceeeeeccccccCCC---------------CCCCcchhHHHHHHHHHHHhhcCCCcccccEEEEecCcccchh
Confidence 43 2 3489999999999964 233333 46899999999999988888999999999999998
Q ss_pred ccHHHHHHcCCC-CCCcEEEE
Q 023838 165 AGAFHMIKEGAL-GDSEAIFG 184 (276)
Q Consensus 165 ~g~~~~~~~~~~-~~~d~~i~ 184 (276)
.|+..++.+..+ ..+.+++-
T Consensus 202 ~gsH~FItQH~w~~~~ka~IN 222 (834)
T KOG2194|consen 202 LGSHAFITQHPWSKNIKAVIN 222 (834)
T ss_pred hhcccceecChhhhhhheEEe
Confidence 788888864333 33445553
No 75
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=98.16 E-value=6e-06 Score=67.51 Aligned_cols=80 Identities=24% Similarity=0.369 Sum_probs=57.0
Q ss_pred eEEEeeccccCCCcCCCCCccccccCCeeecCCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHH
Q 023838 95 VVVLRADMDALPLQELVEWEHKSKIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHM 170 (276)
Q Consensus 95 ~i~l~~H~DtVp~~~~~~w~~~~~~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~ 170 (276)
.|++.+|+|+++. ... + -++.|+ -.+++++|++++.|++.+.+++++|+|+|...||.| .|++++
T Consensus 2 ~ivi~aH~Ds~~~-~~~---------~-~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl~GS~~~ 70 (179)
T PF04389_consen 2 YIVIGAHYDSVGG-DAD---------G-SWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVFFDGEEQGLLGSRAF 70 (179)
T ss_dssp EEEEEEE--BESC-CC----------T-CSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGTSHHHHHH
T ss_pred EEEEEeecCCCCC-cCC---------C-cccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEEecccccCccchHHH
Confidence 6899999999982 211 1 134454 378999999999999977778899999999999998 899999
Q ss_pred HHcC--CCCCCcEEEEE
Q 023838 171 IKEG--ALGDSEAIFGM 185 (276)
Q Consensus 171 ~~~~--~~~~~d~~i~~ 185 (276)
+++. ..+++.++|.+
T Consensus 71 ~~~~~~~~~~~~~~inl 87 (179)
T PF04389_consen 71 VEHDHEELDNIAAVINL 87 (179)
T ss_dssp HHHHHCHHHHEEEEEEE
T ss_pred HHhhhcccccceeEEec
Confidence 9631 12235555554
No 76
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=97.89 E-value=6.5e-05 Score=66.42 Aligned_cols=63 Identities=17% Similarity=0.281 Sum_probs=48.2
Q ss_pred CeeecCCc--cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHHHHcCCCCCCcEEEEEecc
Q 023838 121 GKMHACGH--DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMHID 188 (276)
Q Consensus 121 g~l~g~G~--kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~~~~~~~~~~d~~i~~~~~ 188 (276)
+++.|+.. ..++++++.+++.|++.+ ++.+++++|++.||.| .|+.....+ . ++|.+|+++..
T Consensus 126 ~~i~gkalDdR~g~~~lle~l~~l~~~~--~~~~v~~v~tvqEEvG~rGA~~aa~~--i-~PD~ai~vD~~ 191 (292)
T PF05343_consen 126 GRIVGKALDDRAGCAVLLELLRELKEKE--LDVDVYFVFTVQEEVGLRGAKTAAFR--I-KPDIAIAVDVT 191 (292)
T ss_dssp TEEEETTHHHHHHHHHHHHHHHHHTTSS---SSEEEEEEESSCTTTSHHHHHHHHH--H--CSEEEEEEEE
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHhhcC--CCceEEEEEEeeeeecCcceeecccc--c-CCCEEEEEeee
Confidence 44666654 488999999999998753 5699999999999999 788887665 2 47888887643
No 77
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.017 Score=49.98 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=86.8
Q ss_pred HHHHHHHHHhhhCCCCC--CcHHHHHHHHHHHHHhcCCCeeecc----------CCceEEEEEcCCCCceEEEeeccccC
Q 023838 38 DWLVSVRRQIHENPELL--FEEHNTSALIRRELDKLGIPYAYPV----------AKTGIVAQIGSGSRPVVVLRADMDAL 105 (276)
Q Consensus 38 ~~~~~~~~~l~~ips~s--~~e~~~~~~l~~~l~~~G~~~~~~~----------~~~nvia~~~~~~~~~i~l~~H~DtV 105 (276)
.++.+.++-+. +|.+. .+-.++.+||.+.|+++|+.++.+. .-.|+++++......-+++.+|||+=
T Consensus 51 ~~~~~~L~p~l-v~Rvpgs~g~~~vr~~i~~~l~~l~w~ve~~~f~~~tp~g~~~f~nii~tl~~~A~r~lVlachydsk 129 (338)
T KOG3946|consen 51 NRLWENLLPIL-VPRVPGSPGSRQVRRFIIQHLRNLGWAVETDAFTDNTPLGTRNFNNLIATLDPNASRYLVLACHYDSK 129 (338)
T ss_pred HHHHHhhhhhh-ccccCCCCccHHHHHHHHHHHHhcCceeeeccccccCcceeeeeeeEEEecCCCcchheeeecccccc
Confidence 45555555443 34433 3457899999999999999887531 13589999965544788999999987
Q ss_pred CCcCCCCCccccccCCeeecCCccHHHHHHHHHHHHHHhc----cCCCCceEEEEEecCCCc----c-----ccHHHHHH
Q 023838 106 PLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQR----KDKLKGTVRILFQPAEEG----G-----AGAFHMIK 172 (276)
Q Consensus 106 p~~~~~~w~~~~~~~g~l~g~G~kg~~a~~l~a~~~l~~~----~~~~~~~v~~~~~~dEE~----g-----~g~~~~~~ 172 (276)
-... |.| +-+.|....+|+++..+++|.+. .....-.+.++|-.+||. | .|++++.+
T Consensus 130 ~~p~---~~~-------vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGEEAf~eW~p~DSlYGsRhLA~ 199 (338)
T KOG3946|consen 130 IFPG---GMF-------VGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGEEAFEEWGPEDSLYGSRHLAA 199 (338)
T ss_pred cCCC---cce-------EeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccHHHHhhcCCccccchHHHHHH
Confidence 5321 111 23455667899999999887643 223557899999999994 2 48888876
Q ss_pred c
Q 023838 173 E 173 (276)
Q Consensus 173 ~ 173 (276)
.
T Consensus 200 ~ 200 (338)
T KOG3946|consen 200 K 200 (338)
T ss_pred H
Confidence 4
No 78
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=96.88 E-value=0.018 Score=52.59 Aligned_cols=114 Identities=12% Similarity=0.129 Sum_probs=74.7
Q ss_pred HHHHHHHHhcCCCeeec---------cCCceEEEEEc-CC-------CCceEEEeeccccCCCcCCCCCccccccCCeee
Q 023838 62 ALIRRELDKLGIPYAYP---------VAKTGIVAQIG-SG-------SRPVVVLRADMDALPLQELVEWEHKSKIDGKMH 124 (276)
Q Consensus 62 ~~l~~~l~~~G~~~~~~---------~~~~nvia~~~-~~-------~~~~i~l~~H~DtVp~~~~~~w~~~~~~~g~l~ 124 (276)
+.+..-+...||..... ....|+.+++. +- ..|+|++.+||||..... +.--
T Consensus 165 ~~ll~Tasangy~iv~sg~sp~a~~s~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap-----------~lsv 233 (555)
T KOG2526|consen 165 QHLLQTASANGYSIVSSGQSPEAPPSYKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAP-----------GLSV 233 (555)
T ss_pred HHHHhhhccCcEEEEecCCCcccCCCCccceEEeecccccccccccccCCeEEEEEeccccccCC-----------CCCC
Confidence 44555555667765432 12468999885 21 239999999999997532 1112
Q ss_pred cCCcc-HHHHHHHHHHHHHHhcc----CCCCceEEEEEecCCCcc-ccHHHHHHc---CCCCCCcEEEEEe
Q 023838 125 ACGHD-VHTTMLLGAAKLIHQRK----DKLKGTVRILFQPAEEGG-AGAFHMIKE---GALGDSEAIFGMH 186 (276)
Q Consensus 125 g~G~k-g~~a~~l~a~~~l~~~~----~~~~~~v~~~~~~dEE~g-~g~~~~~~~---~~~~~~d~~i~~~ 186 (276)
|.+++ .|+.++|..++.+.+.. ...++++.|+.+.+---. .|+++.++- .+.+.+|+++|++
T Consensus 234 gADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~lt~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLd 304 (555)
T KOG2526|consen 234 GADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFILTAAGKLNYQGTKKWLEFDDADLQKNVDFAICLD 304 (555)
T ss_pred CCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEEEccCccccccchhhhhhcchHHHHhcccEEEEhh
Confidence 33333 45778899988877643 235899999999886544 788887752 2223589999875
No 79
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=96.49 E-value=0.0077 Score=56.23 Aligned_cols=65 Identities=26% Similarity=0.324 Sum_probs=49.5
Q ss_pred ceEEEeeccccCCCcCCCCCccccccCCeeecCCc-cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-ccHHHHH
Q 023838 94 PVVVLRADMDALPLQELVEWEHKSKIDGKMHACGH-DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMI 171 (276)
Q Consensus 94 ~~i~l~~H~DtVp~~~~~~w~~~~~~~g~l~g~G~-kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g-~g~~~~~ 171 (276)
+.+++.+|+|.+|.+ +|... -.|+++++++++.|++.. ++.+|.|++...||.| .|+.+++
T Consensus 209 ~~~~~~a~~~s~~~~---------------~GA~DNasGva~llEiAr~l~~~~--p~~~v~f~~~~aEE~Gl~GS~~~~ 271 (435)
T COG2234 209 SLGLLGAHIDSVPTG---------------PGADDNASGVAALLELARVLKGNP--PKRTVRFVAFGAEESGLLGSEAYV 271 (435)
T ss_pred ceeeecccccCCcCC---------------CCcccccHHHHHHHHHHHHHhcCC--CCceEEEEEecchhhcccccHHHH
Confidence 556666666665532 12211 257999999999999775 8899999999999998 8999999
Q ss_pred HcCC
Q 023838 172 KEGA 175 (276)
Q Consensus 172 ~~~~ 175 (276)
.+..
T Consensus 272 ~~~~ 275 (435)
T COG2234 272 KRLS 275 (435)
T ss_pred hcCC
Confidence 8754
No 80
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=96.33 E-value=0.014 Score=57.37 Aligned_cols=76 Identities=24% Similarity=0.285 Sum_probs=58.2
Q ss_pred ceEEEEEcCC--CCceEEEeeccccCCCcCCCCCccccccCCeeecCCccHHHHHHHHHHHHH---HhccCCCCceEEEE
Q 023838 82 TGIVAQIGSG--SRPVVVLRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLI---HQRKDKLKGTVRIL 156 (276)
Q Consensus 82 ~nvia~~~~~--~~~~i~l~~H~DtVp~~~~~~w~~~~~~~g~l~g~G~kg~~a~~l~a~~~l---~~~~~~~~~~v~~~ 156 (276)
.|+++++.|. ++.-|++.+|.|..-.+ +-+...|.+.++..++.+ ++.+.+++++|+|+
T Consensus 339 ~NIig~I~Gs~epD~~ViigahrDSw~~G----------------a~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~ 402 (702)
T KOG2195|consen 339 QNIIGKIEGSEEPDRYVIIGAHRDSWTFG----------------AIDPNSGTALLLEIARALSKLKKRGWRPRRTILFA 402 (702)
T ss_pred eeEEEEEecCcCCCeEEEEeccccccccC----------------CcCCCccHHHHHHHHHHHHHHHHcCCCccceEEEE
Confidence 6999999773 67899999999987632 112234577777776664 45678899999999
Q ss_pred EecCCCcc-ccHHHHHHc
Q 023838 157 FQPAEEGG-AGAFHMIKE 173 (276)
Q Consensus 157 ~~~dEE~g-~g~~~~~~~ 173 (276)
....||.| -|+..++++
T Consensus 403 sWdAeEfGliGStE~~E~ 420 (702)
T KOG2195|consen 403 SWDAEEFGLLGSTEWAEE 420 (702)
T ss_pred EccchhccccccHHHHHH
Confidence 99999998 788887764
No 81
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=95.27 E-value=0.14 Score=43.87 Aligned_cols=66 Identities=21% Similarity=0.285 Sum_probs=51.4
Q ss_pred ceEEEeeccccCCCcCCCCCccccccCCeeecCCc---cHHHHHHHHHHHHHHhc---cCCCCceEEEEEecCCCcc-cc
Q 023838 94 PVVVLRADMDALPLQELVEWEHKSKIDGKMHACGH---DVHTTMLLGAAKLIHQR---KDKLKGTVRILFQPAEEGG-AG 166 (276)
Q Consensus 94 ~~i~l~~H~DtVp~~~~~~w~~~~~~~g~l~g~G~---kg~~a~~l~a~~~l~~~---~~~~~~~v~~~~~~dEE~g-~g 166 (276)
|.|+..+.||+.-.-. +. +.|+ -.++.++|+++++|.+. ...++++|.|+|..+|..+ .|
T Consensus 1 ~iIlv~armDs~s~F~-----------~~--s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiG 67 (234)
T PF05450_consen 1 PIILVVARMDSFSFFH-----------DL--SPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIG 67 (234)
T ss_pred CEEEEEecccchhccc-----------CC--CCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccc
Confidence 5789999999986421 22 3344 37889999999999866 2357899999999999999 78
Q ss_pred HHHHHH
Q 023838 167 AFHMIK 172 (276)
Q Consensus 167 ~~~~~~ 172 (276)
+..|+.
T Consensus 68 S~R~vy 73 (234)
T PF05450_consen 68 SSRFVY 73 (234)
T ss_pred hHHHHH
Confidence 988874
No 82
>PF00883 Peptidase_M17: Cytosol aminopeptidase family, catalytic domain; InterPro: IPR000819 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The 2 zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3KZW_L 3KQX_C 3KQZ_L 3KR4_I 3KR5_J 3T8W_C 3H8F_D 3H8G_A 3H8E_B 3IJ3_A ....
Probab=92.58 E-value=1.7 Score=38.68 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=68.0
Q ss_pred HHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeecc--------------------CCc-eEEEEEcCC---CCceEE
Q 023838 42 SVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPV--------------------AKT-GIVAQIGSG---SRPVVV 97 (276)
Q Consensus 42 ~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~--------------------~~~-nvia~~~~~---~~~~i~ 97 (276)
.+.|+|++-|.---.....++++++.++++|++++..+ ..+ -++.+|.+. ..++|+
T Consensus 2 n~aRdL~n~P~n~~~P~~~a~~~~~~~~~~~v~v~v~~~~~l~~~gmg~llaVg~gS~~~P~lv~l~Y~g~~~~~~~~i~ 81 (311)
T PF00883_consen 2 NLARDLVNTPPNILTPETFAEYAKELAKKYGVKVEVLDEKELEKLGMGGLLAVGRGSRHPPRLVVLEYKGNGGKSKKPIA 81 (311)
T ss_dssp HHHHHHHHS-TTTSSHHHHHHHHHHHHHHCTEEEEEEEHHHHHHTT-HHHHHHHTTSSS--EEEEEEEETSTSTTSEEEE
T ss_pred hHHHhhhCCChhhcCHHHHHHHHHHHHhhcCCEEEEEeHHHHHHcCCccEeeecccCCCCCEEEEEEECCCCCCCCccEE
Confidence 56789999987666778899999999999998876521 112 234444332 235666
Q ss_pred EeeccccCCCcCCCCCcccc-----ccCCeeec-CCccHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q 023838 98 LRADMDALPLQELVEWEHKS-----KIDGKMHA-CGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEE 162 (276)
Q Consensus 98 l~~H~DtVp~~~~~~w~~~~-----~~~g~l~g-~G~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE 162 (276)
|.|- +-.|+. +..+.+.+ +..++|.|+.+++++++.+.+ ++-+|..+...-|-
T Consensus 82 LVGK----------GiTFDtGG~~lKp~~~M~~Mk~DM~GAAaV~ga~~aia~lk--~~vnV~~~l~~~EN 140 (311)
T PF00883_consen 82 LVGK----------GITFDTGGLSLKPSGGMEGMKYDMGGAAAVLGAMRAIAKLK--LPVNVVAVLPLAEN 140 (311)
T ss_dssp EEEE----------EEEEEE-TTSSSCSTTGGGGGGGGHHHHHHHHHHHHHHHCT---SSEEEEEEEEEEE
T ss_pred EEcc----------eEEEecCCccCCCCcchhhcccCcchHHHHHHHHHHHHHcC--CCceEEEEEEcccc
Confidence 6543 112221 11122222 222589999999999999875 66888888877665
No 83
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=92.11 E-value=5.3 Score=37.94 Aligned_cols=122 Identities=11% Similarity=0.055 Sum_probs=75.7
Q ss_pred HHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeecc-------CCceEEEEEcCC-CCceEEEeeccc----cC
Q 023838 38 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPV-------AKTGIVAQIGSG-SRPVVVLRADMD----AL 105 (276)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~-------~~~nvia~~~~~-~~~~i~l~~H~D----tV 105 (276)
.+-+.+.|+|++-|+---.....++++++.++++|++++..+ +.+.+++.=.+. ..|.++...+.- .+
T Consensus 171 a~~~~~aRdL~n~P~n~~tP~~~a~~a~~~~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~~prli~l~Y~g~~~~i~ 250 (483)
T PRK00913 171 AEGVNLARDLVNEPPNILTPAYLAERAKELAKEYGLEVEVLDEKEMEKLGMGALLAVGQGSANPPRLIVLEYKGGKKPIA 250 (483)
T ss_pred HHHHHHHHHhhCCChhhcCHHHHHHHHHHHHHhcCCEEEEEeHHHHHhCCCCcEEEEeccCCCCCeEEEEEECCCCCeEE
Confidence 456788999999987556677889999999999999887532 233444443333 236665555431 11
Q ss_pred CCcCCCCCcccc----cc-CCeeec-CCccHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCc
Q 023838 106 PLQELVEWEHKS----KI-DGKMHA-CGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEG 163 (276)
Q Consensus 106 p~~~~~~w~~~~----~~-~g~l~g-~G~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~ 163 (276)
-+|. +-.|++ .+ ...+++ +...+|.|+.+++++++.+.+ ++-+|+.+...-|-.
T Consensus 251 LVGK--GITFDsGG~slKp~~~M~~MK~DM~GAAaVlga~~aia~lk--l~vnV~~v~~l~ENm 310 (483)
T PRK00913 251 LVGK--GLTFDSGGISLKPAAGMDEMKYDMGGAAAVLGTMRALAELK--LPVNVVGVVAACENM 310 (483)
T ss_pred EEcC--ceEecCCCccCCCCcChhhcccccHhHHHHHHHHHHHHHcC--CCceEEEEEEeeccC
Confidence 1111 122331 11 111221 111489999999999998875 678888888877763
No 84
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=91.98 E-value=9.2 Score=36.27 Aligned_cols=122 Identities=16% Similarity=0.091 Sum_probs=76.3
Q ss_pred HHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeecc-------CCceEEEEEcCC-CCceEEEeeccccCCCcC
Q 023838 38 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPV-------AKTGIVAQIGSG-SRPVVVLRADMDALPLQE 109 (276)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~-------~~~nvia~~~~~-~~~~i~l~~H~DtVp~~~ 109 (276)
.+-+.+.|+|++-|+--......++++++.+++.|++++..+ +.+.+++.=.+. ..|.++...+...-+...
T Consensus 154 a~~~~~aRdL~n~P~n~~tP~~~a~~a~~l~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~~p~lv~l~Y~g~~~~~~ 233 (468)
T cd00433 154 AEGVNLARDLVNTPANDLTPTYLAEEAKELAKELGVKVEVLDEKELEELGMGALLAVGKGSEEPPRLIVLEYKGKGASKK 233 (468)
T ss_pred HHHHHHHHHhhcCCcccCCHHHHHHHHHHHHHhcCCEEEEEcHHHHHhCCCCceeeecccCCCCCEEEEEEECCCCCCCC
Confidence 466788999999987656677899999999999999887632 233444442333 346666555543221000
Q ss_pred -----CCCCccccccCCe-e-ecC---Cc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCc
Q 023838 110 -----LVEWEHKSKIDGK-M-HAC---GH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEG 163 (276)
Q Consensus 110 -----~~~w~~~~~~~g~-l-~g~---G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~ 163 (276)
..+-.|++ +|. | -+. +| .+|.|+.+++++++.+.+ ++-+|+.+...-|-.
T Consensus 234 ~i~LVGKGiTFDs--GG~slKp~~~M~~Mk~DM~GAAaVlga~~aia~l~--~~vnV~~i~~~~EN~ 296 (468)
T cd00433 234 PIALVGKGITFDT--GGLSLKPAAGMDGMKYDMGGAAAVLGAMKAIAELK--LPVNVVGVLPLAENM 296 (468)
T ss_pred cEEEEcCceEecC--CCccccCccChhhccccchhHHHHHHHHHHHHHcC--CCceEEEEEEeeecC
Confidence 00112321 121 1 012 23 489999999999999875 688888888877763
No 85
>PRK05015 aminopeptidase B; Provisional
Probab=86.97 E-value=20 Score=33.34 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=68.2
Q ss_pred HHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhc---CCCeeecc-------CCceEEEEEcCCCC-ceEEEeeccccCCC
Q 023838 39 WLVSVRRQIHENPELLFEEHNTSALIRRELDKL---GIPYAYPV-------AKTGIVAQIGSGSR-PVVVLRADMDALPL 107 (276)
Q Consensus 39 ~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~---G~~~~~~~-------~~~nvia~~~~~~~-~~i~l~~H~DtVp~ 107 (276)
+.+.+.|+|++-|+---.....++...++++++ +++++..+ +...+++.=++... |.++-. +|. |.
T Consensus 101 ~~~~~aRdLvn~P~n~ltP~~lA~~a~~~~~~~~~~~v~v~Vl~~~~L~~~gmggilaVgrGS~~pP~lv~L-~Y~--~~ 177 (424)
T PRK05015 101 KIIDWVRDTINAPAEELGPEQLAQRAADLICSVAGDAVSYRIIKGEDLREQGYMGIHTVGRGSERPPVLLAL-DYN--PT 177 (424)
T ss_pred HHHHHHHHHhcCCcccCCHHHHHHHHHHHHHhhccCceEEEEeeHHHHHHCCCCceeeeeccCCCCCEEEEE-Eec--CC
Confidence 457888999999875555567777777777776 46665421 23344444233323 444433 332 32
Q ss_pred cCCCCCc-----------cccccCCe-ee-c---CCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCc
Q 023838 108 QELVEWE-----------HKSKIDGK-MH-A---CGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEG 163 (276)
Q Consensus 108 ~~~~~w~-----------~~~~~~g~-l~-g---~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~ 163 (276)
++. +.+ |+ .+|. |- + .+| .+|.|+.++++.++.+.+ ++.+|..++...|-.
T Consensus 178 g~~-~~~v~~aLVGKGITFD--SGG~sLKps~~M~~MK~DMgGAAaV~ga~~~a~~~~--l~~nV~~il~~aENm 247 (424)
T PRK05015 178 GDP-DAPVYACLVGKGITFD--SGGYSIKPSAGMDSMKSDMGGAATVTGALALAITRG--LNKRVKLFLCCAENL 247 (424)
T ss_pred CCC-CCCeeEEEecCceEec--CCCccCCCCcCHHHhhcchhHHHHHHHHHHHHHhcC--CCceEEEEEEecccC
Confidence 221 122 22 1121 10 1 123 388999999998777664 788999998887764
No 86
>KOG2597 consensus Predicted aminopeptidase of the M17 family [General function prediction only]
Probab=84.64 E-value=13 Score=35.33 Aligned_cols=124 Identities=13% Similarity=0.062 Sum_probs=76.4
Q ss_pred HHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeecc------CCceEEEEE-cCC-CCceEEEeeccccCCCcC
Q 023838 38 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPV------AKTGIVAQI-GSG-SRPVVVLRADMDALPLQE 109 (276)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~------~~~nvia~~-~~~-~~~~i~l~~H~DtVp~~~ 109 (276)
.+-+.+.++|..-|.--......++++.+.+...|+.++..+ -.-|.+... ++. ..|.++...|.++=|...
T Consensus 189 ~~~~~lar~l~d~PaN~Mtp~~fae~a~~~~~~~~v~v~V~~~~~i~~~~~~~~l~V~k~s~~pP~ll~lsY~g~~~~~~ 268 (513)
T KOG2597|consen 189 AAAQNLARRLGDTPANRMTPTQFAEEAVDVLCPLGVTVEVRDEEWIEEQGMNSFLAVAKASCEPPRLLELSYKGTSGADK 268 (513)
T ss_pred HHHHHHHHHhccCChhhcCHHHHHHHHHHhhcccCceEEEechHHHhhccccceeeeccccCCCCEEEEEEEcCCCCCcc
Confidence 455667788877775444567789999999999998765421 122333333 333 347777787777654321
Q ss_pred CC-----CCcccc-----ccCCeeec-CCccHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCc
Q 023838 110 LV-----EWEHKS-----KIDGKMHA-CGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEG 163 (276)
Q Consensus 110 ~~-----~w~~~~-----~~~g~l~g-~G~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~ 163 (276)
.- +-.|+. +..+.+.+ |+.++|.|+.+++++++.+.+ ++-++.+++.--|-.
T Consensus 269 ~i~lvGKGvtfDsGGl~iK~~~~M~~mr~dm~GAA~v~~~~~a~~~l~--~~in~~~v~plcENm 331 (513)
T KOG2597|consen 269 TILLVGKGVTFDSGGLSIKPKTGMDGMRRDMGGAAVVLGAFRAAAQLS--LPINVHAVLPLCENM 331 (513)
T ss_pred eEEEEecceEEecCccccccCCChhhhhhhccccHHHHHHHHHHHhcC--CCCceEEEEeeeccC
Confidence 11 112221 11122222 334688999999999988775 558888888877764
No 87
>PTZ00412 leucyl aminopeptidase; Provisional
Probab=84.17 E-value=28 Score=33.66 Aligned_cols=117 Identities=15% Similarity=0.039 Sum_probs=71.1
Q ss_pred HHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCee-ecc-------CCceEEEEEcCCC-CceEEEeeccccCCCc
Q 023838 38 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYA-YPV-------AKTGIVAQIGSGS-RPVVVLRADMDALPLQ 108 (276)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~-~~~-------~~~nvia~~~~~~-~~~i~l~~H~DtVp~~ 108 (276)
.+-+.+.|+|++-|+--......++.+++.+.+.|++++ ..+ +.+.+++.=.+.. .|.++...|. |..
T Consensus 212 a~~vn~ARdLvn~P~N~ltP~~~Ae~a~~~~~~~g~~v~~Vl~~~~l~~~gmg~llaVgkGS~~pPrli~L~Y~---g~~ 288 (569)
T PTZ00412 212 GHCVNEARNLGNLREDEGVPQFYAEWIKKELAPLGIKVRKVLRGEQLEGAGLNLMYNVGKGSRHEPYLVVFEYI---GNP 288 (569)
T ss_pred HHHHHHHHHhccCChhhcCHHHHHHHHHHHHhhcCCEEEEEEcHHHHHHCCCcceeeeeccCCCCCEEEEEEeC---CCC
Confidence 456778999999887555566788888888888899885 321 2334444433332 3555544442 211
Q ss_pred CCCCCc---------cccccCCe-ee-c---CCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q 023838 109 ELVEWE---------HKSKIDGK-MH-A---CGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEE 162 (276)
Q Consensus 109 ~~~~w~---------~~~~~~g~-l~-g---~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE 162 (276)
+ ...+ |++ +|. |- + .+| .+|.|+.+++++++.+.+ ++-+|+.++..-|-
T Consensus 289 ~-~~~~iaLVGKGITFDS--GGisLKP~~~M~~MK~DMgGAAaVlga~~AiA~Lk--lpvnVv~iiplaEN 354 (569)
T PTZ00412 289 R-SSAATALVGKGVTFDC--GGLNIKPYGSMETMHSDMMGAATVMCTLKAIAKLQ--LPVNVVAAVGLAEN 354 (569)
T ss_pred C-CCCcEEEEcCceEEcC--CCCCCCCccChhhhhccchhHHHHHHHHHHHHHcC--CCeEEEEEEEhhhc
Confidence 1 1112 321 121 00 1 122 489999999999998764 67888888777776
No 88
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=81.17 E-value=37 Score=32.36 Aligned_cols=121 Identities=17% Similarity=0.128 Sum_probs=67.0
Q ss_pred HHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcC-CCeeecc-------CCceEEEEEcCC-CCceEEEe---eccc-c
Q 023838 38 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLG-IPYAYPV-------AKTGIVAQIGSG-SRPVVVLR---ADMD-A 104 (276)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G-~~~~~~~-------~~~nvia~~~~~-~~~~i~l~---~H~D-t 104 (276)
-+-+.+.|+|++.|.---...+.++. .+.|++.+ ++++..+ +.+.+++.=.+. ..|+++-. ++=+ -
T Consensus 167 ~~~v~~aRdLvN~P~n~l~P~~la~~-a~~la~~~~v~veVl~~~~l~~~gmg~llaVg~GS~~~Prlivl~y~g~~~~~ 245 (485)
T COG0260 167 AEGVNLARDLVNTPANILTPEELAER-AELLAKLGGVKVEVLDEKDLEKLGMGALLAVGKGSARPPRLIVLEYNGKGKAK 245 (485)
T ss_pred HHHHHHHHHHhhCCcccCCHHHHHHH-HHHHhhcCCceEEEecHHHHHHcCCceeeeeccCCCCCCeEEEEEcCCCCCCC
Confidence 45678899999999765556667777 66776665 6666531 233344332222 23444322 1111 1
Q ss_pred CCCc-CCCCCccccccCCe-e-ec---CCc---cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCc
Q 023838 105 LPLQ-ELVEWEHKSKIDGK-M-HA---CGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEG 163 (276)
Q Consensus 105 Vp~~-~~~~w~~~~~~~g~-l-~g---~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~ 163 (276)
.|.. =..+-.|++ +|. | -+ .+| .||.|+.++++.++.+.+ ++-+|+.+...-|-.
T Consensus 246 ~~iaLVGKGitFDs--GGisiKp~~~M~~MK~DMgGAAaV~g~~~a~a~l~--l~vnv~~vl~~~ENm 309 (485)
T COG0260 246 KPIALVGKGITFDS--GGISIKPAAGMDTMKYDMGGAAAVLGAMRALAELK--LPVNVVGVLPAVENM 309 (485)
T ss_pred ceEEEEcCceeecC--CCcccCCccchhhhhcccchHHHHHHHHHHHHHcC--CCceEEEEEeeeccC
Confidence 1100 001122321 121 0 01 233 389999999999998875 678888888777763
No 89
>PF06675 DUF1177: Protein of unknown function (DUF1177); InterPro: IPR009561 This family consists of several hypothetical archaeal and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=67.03 E-value=14 Score=31.75 Aligned_cols=86 Identities=19% Similarity=0.194 Sum_probs=54.6
Q ss_pred CCceEEEeeccccCCCcCCCCCccccccCCeeecCCccHHHHHHHHHHHHH--HhccCCCCceEEEEEecCCC--c----
Q 023838 92 SRPVVVLRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLI--HQRKDKLKGTVRILFQPAEE--G---- 163 (276)
Q Consensus 92 ~~~~i~l~~H~DtVp~~~~~~w~~~~~~~g~l~g~G~kg~~a~~l~a~~~l--~~~~~~~~~~v~~~~~~dEE--~---- 163 (276)
..|++-+.|-+=-+....+ -...-.+++|.++++..|++.+ ++.+..++++|++.-.-.-- .
T Consensus 30 ~aptlGIiGRLGgigARP~----------~iGlVSDaDGAi~ala~a~KL~~M~~kGd~L~GDVii~ThIcp~Apt~PH~ 99 (276)
T PF06675_consen 30 SAPTLGIIGRLGGIGARPE----------RIGLVSDADGAIAALAAALKLLDMQAKGDVLPGDVIITTHICPDAPTRPHD 99 (276)
T ss_pred CCCeeEEEeeccccccccc----------ceeeeecCchHHHHHHHHHHHHHHHHcCCccCCcEEEEEecCCCCCCCCCC
Confidence 4589988877766654211 0112245567788887777764 46688899999997544333 1
Q ss_pred -----c--ccHHHHHHcCCCCCCcEEEEEec
Q 023838 164 -----G--AGAFHMIKEGALGDSEAIFGMHI 187 (276)
Q Consensus 164 -----g--~g~~~~~~~~~~~~~d~~i~~~~ 187 (276)
+ -+...+.++..-+.+|++++.+.
T Consensus 100 PvpFM~sPv~~~~~n~~EV~p~mdAILSiDT 130 (276)
T PF06675_consen 100 PVPFMGSPVDMATMNRHEVDPEMDAILSIDT 130 (276)
T ss_pred CcccccCccCHHHHHHhhcCcccceEEEEec
Confidence 1 35566666655567999998753
No 90
>PRK02256 putative aminopeptidase 1; Provisional
Probab=64.39 E-value=14 Score=34.98 Aligned_cols=40 Identities=25% Similarity=0.207 Sum_probs=26.6
Q ss_pred CeeecCCc--cHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc
Q 023838 121 GKMHACGH--DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG 164 (276)
Q Consensus 121 g~l~g~G~--kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g 164 (276)
..+.|.+- ..++.+++.++..+. .++..++++++..||.|
T Consensus 252 efI~s~rLDNr~~~~~~leal~~~~----~~~~~~~~~~~dqEEVG 293 (462)
T PRK02256 252 SLIGAYGQDDRVCAYTSLEALLELE----NPEKTAVVLLVDKEEIG 293 (462)
T ss_pred ceeeccccccHHHHHHHHHHHHhcc----cCCCeEEEEEEcccccC
Confidence 45555443 355666666665432 35679999999999988
No 91
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=53.02 E-value=41 Score=22.86 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhC-CCCCCcHHHHHHHHHHHHH-hcCCC
Q 023838 26 TNQVMISAQQDKDWLVSVRRQIHEN-PELLFEEHNTSALIRRELD-KLGIP 74 (276)
Q Consensus 26 ~~~i~~~i~~~~~~~~~~~~~l~~i-ps~s~~e~~~~~~l~~~l~-~~G~~ 74 (276)
.+++.+.+++.+.+..++-.++-.. .+ -+++.+..+ ++|+.
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l~~~--------~~~ie~~AR~~lgm~ 68 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERLKND--------PDYIEKVAREKLGMV 68 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHcCCc
Confidence 3445555555555555555554443 22 267777777 67764
No 92
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=48.79 E-value=1.9e+02 Score=28.16 Aligned_cols=89 Identities=11% Similarity=0.161 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCCeeecc---------CCceEEEEEcCC---CCceEEEeeccccCCCcCCCCCccccccCCeeecCCcc
Q 023838 62 ALIRRELDKLGIPYAYPV---------AKTGIVAQIGSG---SRPVVVLRADMDALPLQELVEWEHKSKIDGKMHACGHD 129 (276)
Q Consensus 62 ~~l~~~l~~~G~~~~~~~---------~~~nvia~~~~~---~~~~i~l~~H~DtVp~~~~~~w~~~~~~~g~l~g~G~k 129 (276)
.++...+++.|.+..... ++.|+++.+.+. ....++|. ||-+.. -|- ..
T Consensus 92 ~~~~~~~q~FGl~t~~~n~~~~P~e~y~G~NvyGilRAPRgdgtEsivl~-----vP~~~~-------------~~~-~~ 152 (617)
T KOG3566|consen 92 AWAEVSMQEFGLETHTQNYSNGPFEEYSGENVYGILRAPRGDGTESIVLV-----VPYGRS-------------SGS-NS 152 (617)
T ss_pred hHHHHHHHHhCccccccCccCCchhhcCCceEEEEEecCCCCCcceEEEE-----EecccC-------------CCc-ch
Confidence 346677777788765421 257999998542 23777774 552111 011 13
Q ss_pred HHHHHHHHHHHHHHhccCCCCceEEEEEecCCCccccHHHHHH
Q 023838 130 VHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGGAGAFHMIK 172 (276)
Q Consensus 130 g~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~g~~~~~~ 172 (276)
++++.+++.++.+++. .-...+|+++++-++-- |....++
T Consensus 153 ~~v~l~lsla~~f~r~-~yWsKDII~v~~d~~~~--g~~AwLe 192 (617)
T KOG3566|consen 153 ASVALLLSLADYFSRW-VYWSKDIIFVFTDGPAL--GLDAWLE 192 (617)
T ss_pred hHHHHHHHHHHHhcCC-eeecccEEEEEeCCccc--cHHHHHH
Confidence 4577777777776643 34688999999977433 4444443
No 93
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=45.26 E-value=18 Score=29.05 Aligned_cols=32 Identities=13% Similarity=0.037 Sum_probs=27.1
Q ss_pred hhhCCCCCCcHHHHHHHHHHHHHhcCCCeeec
Q 023838 47 IHENPELLFEEHNTSALIRRELDKLGIPYAYP 78 (276)
Q Consensus 47 l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~ 78 (276)
|+-..+-.|+..+++++|...|++.|+++...
T Consensus 4 LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~ 35 (175)
T COG4635 4 LILYSTRDGQTRKIAEYIASHLRESGIQVDIQ 35 (175)
T ss_pred EEEEecCCCcHHHHHHHHHHHhhhcCCeeeee
Confidence 44556677899999999999999999998764
No 94
>COG3149 PulM Type II secretory pathway, component PulM [Intracellular trafficking and secretion]
Probab=40.55 E-value=2e+02 Score=23.37 Aligned_cols=50 Identities=10% Similarity=0.036 Sum_probs=29.6
Q ss_pred HHHHHHhhHHHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCeeeccCC
Q 023838 29 VMISAQQDKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAK 81 (276)
Q Consensus 29 i~~~i~~~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~ 81 (276)
..++++..-+++.++.. .-..|.+++ ....+.|.+-++..|+++++.+.+
T Consensus 76 ~~a~v~~~a~dv~alra-~a~~~t~s~--~~l~~~It~S~~~~gl~~~Rl~~~ 125 (181)
T COG3149 76 LLAYVQQQAPDVRALRA-AAPQATPSP--AALQGVITASARQHGLSVERLDNR 125 (181)
T ss_pred HHHHHHhhhhHHHHHHh-cCCCCCCCc--HHHHHHHHHHHHhcCceEEEecCC
Confidence 33444444444443332 111244444 578899999999999999876443
No 95
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=37.96 E-value=43 Score=31.29 Aligned_cols=69 Identities=20% Similarity=0.228 Sum_probs=40.5
Q ss_pred ceEEEeeccccCCC-cCCCCCcccc------ccCCeee-cCCccHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCcc-
Q 023838 94 PVVVLRADMDALPL-QELVEWEHKS------KIDGKMH-ACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG- 164 (276)
Q Consensus 94 ~~i~l~~H~DtVp~-~~~~~w~~~~------~~~g~l~-g~G~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g- 164 (276)
..+.|-||+|.||. +...+..+.+ +++.++- ..|++. +++.+..+ .| ....+++...++++||++
T Consensus 62 ~~~~L~a~~d~V~~i~~~sh~Dt~~d~~~~~v~~~~l~~~~Gad~-i~~~~~~a-~L----~~~~~P~~~~~t~~~ei~~ 135 (414)
T COG2195 62 VPAVLQAHLDMVPEIGFISHHDTVPDPIGPNVNPQILKATLGADN-IGLAIGLA-VL----SPEHFPLEVLLTGDEEITT 135 (414)
T ss_pred eeEEeeccccccccccccccccccccccccccCCceeeeccCcch-hhhhhHHh-hc----CcccCCceeeeecceEEec
Confidence 67889999999994 4444444432 2344554 456433 32222222 11 124789999999999976
Q ss_pred ccHH
Q 023838 165 AGAF 168 (276)
Q Consensus 165 ~g~~ 168 (276)
.|+.
T Consensus 136 dGa~ 139 (414)
T COG2195 136 DGAT 139 (414)
T ss_pred cCcc
Confidence 3443
No 96
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=36.32 E-value=2e+02 Score=24.92 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=40.5
Q ss_pred hCCCCCC-cHHHHHHHHHHHHHhcCCCeeeccCCceEEEEEcCCCCceEEEeeccccCCC
Q 023838 49 ENPELLF-EEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVVLRADMDALPL 107 (276)
Q Consensus 49 ~ips~s~-~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~DtVp~ 107 (276)
+||+-.- +...-++.+++.+++.|+.. .+.+..+|..+-..+....+|.||.=+.-+
T Consensus 137 ~i~t~~t~D~~~h~~~i~k~wk~rgi~F--~~~k~slISV~~h~~d~~~lFvGH~GVLv~ 194 (250)
T PF14133_consen 137 RIPTENTKDIKVHAEKIQKYWKERGIKF--NNDKASLISVFLHDPDDNSLFVGHTGVLVP 194 (250)
T ss_pred cCCccccCCHHHHHHHHHHHHHHcCcee--CCCceEEEEEEEEcCCCCeEEeeeEEEEEE
Confidence 5776543 44567888999999999988 234555666553235578999999888754
No 97
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=35.12 E-value=1.3e+02 Score=28.84 Aligned_cols=72 Identities=14% Similarity=0.173 Sum_probs=48.6
Q ss_pred CceEEEEEcCC---CCceEEEeeccccCCCcCCCCCccccccCCeeecCCccHHHHHHHHHHHHHHhccCCCCceEEEEE
Q 023838 81 KTGIVAQIGSG---SRPVVVLRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILF 157 (276)
Q Consensus 81 ~~nvia~~~~~---~~~~i~l~~H~DtVp~~~~~~w~~~~~~~g~l~g~G~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~ 157 (276)
+.|+++.+... +...+++...++... +. -..++++.+++.++.+++.. -...+|+|++
T Consensus 3 G~nvy~i~rapR~d~tEaivl~~~~~~~~--------------~~----~n~~~v~l~lal~~~~~~~~-~wsKDii~l~ 63 (504)
T PF04114_consen 3 GTNVYGILRAPRGDGTEAIVLVVPWRDSD--------------GE----YNAGGVALALALARYFRRQS-YWSKDIIFLF 63 (504)
T ss_pred ceEEEEEEecCCCCCceeEEEEEecCCCC--------------cc----cchhhHHHHHHHHHHhhhch-hhhccEEEEe
Confidence 57899988532 247888876655432 11 11345899999999998764 3689999999
Q ss_pred ecCCCccccHHHHHHc
Q 023838 158 QPAEEGGAGAFHMIKE 173 (276)
Q Consensus 158 ~~dEE~g~g~~~~~~~ 173 (276)
+.+|.. |.+..+++
T Consensus 64 ~~~~~~--g~~awl~~ 77 (504)
T PF04114_consen 64 TDDELA--GMQAWLEA 77 (504)
T ss_pred cCCcch--HHHHHHHH
Confidence 876654 56666543
No 98
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=34.72 E-value=1.3e+02 Score=22.25 Aligned_cols=12 Identities=25% Similarity=0.457 Sum_probs=8.8
Q ss_pred HHHHHHHHh-cCC
Q 023838 62 ALIRRELDK-LGI 73 (276)
Q Consensus 62 ~~l~~~l~~-~G~ 73 (276)
+|+++..++ +|+
T Consensus 65 dyiEe~AR~~Lg~ 77 (105)
T PRK00888 65 EAIEERARNELGM 77 (105)
T ss_pred HHHHHHHHHHcCC
Confidence 788888875 565
No 99
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=32.27 E-value=1.5e+02 Score=27.30 Aligned_cols=70 Identities=23% Similarity=0.269 Sum_probs=39.8
Q ss_pred eEEEEEcCCCCceEEEeeccccCCCcCCCCCccccccCCeeecCCccHHHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q 023838 83 GIVAQIGSGSRPVVVLRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEE 162 (276)
Q Consensus 83 nvia~~~~~~~~~i~l~~H~DtVp~~~~~~w~~~~~~~g~l~g~G~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE 162 (276)
|+|+. .++..+.+++.+|.|+=..|. ++.-.|++.++.++..|...+ ....++..+.||
T Consensus 180 ~~Ia~-~~~en~vv~i~AH~DHW~~G~----------------tDN~lg~~~AV~~~~~lr~~~----~~~~lv~FtAEE 238 (486)
T COG4882 180 NVIAV-DGGENGVVLIGAHLDHWYTGF----------------TDNILGVAQAVETAGRLRGRG----LAAGLVVFTAEE 238 (486)
T ss_pred EEEEe-cCCCCCceEEeechhhhhhcc----------------cchhhhHHHHHHHHHHHhhcC----cceeEEEEeccc
Confidence 44443 223347888888988776532 222234777777777776443 233444445566
Q ss_pred cc----------ccHHHHHHc
Q 023838 163 GG----------AGAFHMIKE 173 (276)
Q Consensus 163 ~g----------~g~~~~~~~ 173 (276)
.| .|++.++++
T Consensus 239 ~g~p~~~sfyWa~GSr~~lk~ 259 (486)
T COG4882 239 HGMPGMASFYWAAGSRGLLKE 259 (486)
T ss_pred cCCCCCcceeecccchHHHhh
Confidence 43 277777765
No 100
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=31.14 E-value=1.3e+02 Score=21.13 Aligned_cols=13 Identities=8% Similarity=0.046 Sum_probs=5.2
Q ss_pred HHHHHHHhhHHHH
Q 023838 28 QVMISAQQDKDWL 40 (276)
Q Consensus 28 ~i~~~i~~~~~~~ 40 (276)
++.+.+++..+++
T Consensus 30 ~~~~ti~~l~~~~ 42 (90)
T PF06103_consen 30 EVNKTIDTLQEQV 42 (90)
T ss_pred HHHHHHHHHHHhH
Confidence 3444444433333
No 101
>PRK08055 chorismate mutase; Provisional
Probab=30.32 E-value=3.1e+02 Score=22.49 Aligned_cols=51 Identities=12% Similarity=0.046 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhCCCCC---CcHHHHHHHHHHHHHhcCCCe
Q 023838 25 LTNQVMISAQQDKDWLVSVRRQIHENPELL---FEEHNTSALIRRELDKLGIPY 75 (276)
Q Consensus 25 ~~~~i~~~i~~~~~~~~~~~~~l~~ips~s---~~e~~~~~~l~~~l~~~G~~~ 75 (276)
...++.+.+.++..-+.+.-..=-....+= ..|.++.+-+.+..++.|++.
T Consensus 26 ~~~~Lv~Li~eRl~la~~VA~~K~~~~~PI~Dp~RE~~VL~~v~~~A~~~GLdp 79 (181)
T PRK08055 26 SLGALATLINERLSYMKDVAGYKAEHHLPIEDLTQEQKVLAEAEEEAASNGLDP 79 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHhhhCCCCH
Confidence 445566677766554444433332222221 357788888888888888764
No 102
>PRK02256 putative aminopeptidase 1; Provisional
Probab=30.27 E-value=2.9e+02 Score=26.25 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhcCCCe--eec-----------cCCceEEEEE-cCCC-C-ceEEEeeccccCC
Q 023838 57 EHNTSALIRRELDKLGIPY--AYP-----------VAKTGIVAQI-GSGS-R-PVVVLRADMDALP 106 (276)
Q Consensus 57 e~~~~~~l~~~l~~~G~~~--~~~-----------~~~~nvia~~-~~~~-~-~~i~l~~H~DtVp 106 (276)
+..+.+++++.|++.||.- +.. .+...++|-. +..+ + .--+..+|.|.-.
T Consensus 41 p~Hav~~~~~~L~~~GF~el~e~~~l~~g~kyy~~r~~ssliAf~ig~~~~~~g~~iv~aHtDsP~ 106 (462)
T PRK02256 41 EREAVKEIIELAEEKGFINLEEIIGLKPGDKVYAVNRGKSVALAVIGKEPLEEGLNIIGAHIDSPR 106 (462)
T ss_pred HHHHHHHHHHHHHHcCCeecccccccCCCCEEEEEcCCCEEEEEEeCCCCCCCceEEEEEecCCCC
Confidence 4678999999999999953 111 0122455443 3322 2 3457899999864
No 103
>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....
Probab=30.02 E-value=1.2e+02 Score=21.44 Aligned_cols=16 Identities=38% Similarity=0.665 Sum_probs=13.8
Q ss_pred cHHHHHHHHHHHHHhc
Q 023838 56 EEHNTSALIRRELDKL 71 (276)
Q Consensus 56 ~e~~~~~~l~~~l~~~ 71 (276)
++.+++++|++.|.+.
T Consensus 34 ~~~eiA~~iK~~lD~~ 49 (89)
T PF01221_consen 34 DEKEIAEFIKQELDKK 49 (89)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcc
Confidence 5688999999999875
No 104
>PRK02813 putative aminopeptidase 2; Provisional
Probab=29.94 E-value=69 Score=30.04 Aligned_cols=20 Identities=35% Similarity=0.197 Sum_probs=16.8
Q ss_pred CceEEEEEecCCCcc-c---cHHH
Q 023838 150 KGTVRILFQPAEEGG-A---GAFH 169 (276)
Q Consensus 150 ~~~v~~~~~~dEE~g-~---g~~~ 169 (276)
+..++++++..||.| . |+..
T Consensus 252 ~~~~~~~~~d~EEVGs~~~~GA~s 275 (428)
T PRK02813 252 DATNVLAAFDHEEVGSATKQGADS 275 (428)
T ss_pred CCeEEEEEEecCccCCCCCcccCc
Confidence 679999999999988 4 7764
No 105
>PRK04330 hypothetical protein; Provisional
Probab=28.97 E-value=1.8e+02 Score=20.77 Aligned_cols=39 Identities=5% Similarity=-0.045 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCC
Q 023838 36 DKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIP 74 (276)
Q Consensus 36 ~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~ 74 (276)
..++++++|.++++-.+++.+-+++++-..+.|.+-+..
T Consensus 10 ~ik~~~~~L~~I~~D~sVPRNIRraa~ea~~~L~~e~~~ 48 (88)
T PRK04330 10 KIKQAIQMLEEIINDTSVPRNIRRAATEAKEILLNEEES 48 (88)
T ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhCcCcc
Confidence 346788889999999999999999999999988876653
No 106
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=27.83 E-value=88 Score=21.29 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=13.0
Q ss_pred HHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCe
Q 023838 39 WLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPY 75 (276)
Q Consensus 39 ~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~ 75 (276)
.-.+.+++|++-..++.+ +-|.+.|++.|+.+
T Consensus 5 ~R~~~I~~li~~~~i~sQ-----~eL~~~L~~~Gi~v 36 (70)
T PF01316_consen 5 KRQELIKELISEHEISSQ-----EELVELLEEEGIEV 36 (70)
T ss_dssp HHHHHHHHHHHHS---SH-----HHHHHHHHHTT-T-
T ss_pred HHHHHHHHHHHHCCcCCH-----HHHHHHHHHcCCCc
Confidence 334445555544444332 33555555556654
No 107
>PRK05066 arginine repressor; Provisional
Probab=25.67 E-value=1.3e+02 Score=24.03 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCC-ee
Q 023838 36 DKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIP-YA 76 (276)
Q Consensus 36 ~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~-~~ 76 (276)
.+.+..+.+++|++..+++-+ +-|.+.|++.|+. ++
T Consensus 6 ~k~~r~~~I~~iI~~~~I~tQ-----eeL~~~L~~~Gi~~vT 42 (156)
T PRK05066 6 KQEELVKAFKALLKEEKFGSQ-----GEIVTALQEQGFDNIN 42 (156)
T ss_pred hHHHHHHHHHHHHhhCCCCCH-----HHHHHHHHHCCCCeec
Confidence 345667777888877666544 5577888888998 64
No 108
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=25.30 E-value=2.6e+02 Score=25.83 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=36.7
Q ss_pred cCCCCceEEEeeccccCCCcCCCCCccccccCCeeecCCccHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCccccHH
Q 023838 89 GSGSRPVVVLRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGGAGAF 168 (276)
Q Consensus 89 ~~~~~~~i~l~~H~DtVp~~~~~~w~~~~~~~g~l~g~G~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~g~~ 168 (276)
+|...+.|+|.+|+.+=-- +-+-=+|.+.+..+++.|++.. .+.+..|+|.|+ --|+.
T Consensus 125 pG~s~~EillsthiCHPsm-----------------ANdnLSG~~v~~~La~~L~~~~--~rytYRflf~Pe---TIGsI 182 (386)
T PF09940_consen 125 PGESDEEILLSTHICHPSM-----------------ANDNLSGPAVLTFLAKWLKQLP--NRYTYRFLFVPE---TIGSI 182 (386)
T ss_dssp --SSS-EEEEEEE----S------------------TTTTHHHHHHHHHHHHHHTTS----SSEEEEEEE-T---THHHH
T ss_pred cCCCCCeEEEEEeccCccc-----------------ccccccHHHHHHHHHHHHhcCC--cCceEEEEEccc---cHHHH
Confidence 5655699999999876432 1122256888888899888764 449999999985 23566
Q ss_pred HHHHc
Q 023838 169 HMIKE 173 (276)
Q Consensus 169 ~~~~~ 173 (276)
.++.+
T Consensus 183 ~yLsk 187 (386)
T PF09940_consen 183 TYLSK 187 (386)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 109
>PF11803 UXS1_N: UDP-glucuronate decarboxylase N-terminal; InterPro: IPR021761 The N terminus of the UDP-glucuronate decarboxylases may be involved in localisation to the perinuclear Golgi membrane. ; GO: 0048040 UDP-glucuronate decarboxylase activity
Probab=24.35 E-value=1.6e+02 Score=20.34 Aligned_cols=22 Identities=0% Similarity=0.130 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHH
Q 023838 25 LTNQVMISAQQDKDWLVSVRRQ 46 (276)
Q Consensus 25 ~~~~i~~~i~~~~~~~~~~~~~ 46 (276)
+++++.+.+...++++.++=..
T Consensus 51 ie~kiee~v~plreki~dle~S 72 (78)
T PF11803_consen 51 IEQKIEEAVAPLREKIRDLEKS 72 (78)
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 5566666666666666555433
No 110
>PRK11546 zraP zinc resistance protein; Provisional
Probab=21.12 E-value=2.2e+02 Score=22.34 Aligned_cols=19 Identities=11% Similarity=-0.067 Sum_probs=7.8
Q ss_pred HHHHHHhhHHHHHHHHHHh
Q 023838 29 VMISAQQDKDWLVSVRRQI 47 (276)
Q Consensus 29 i~~~i~~~~~~~~~~~~~l 47 (276)
+.+..++..++..+++++|
T Consensus 52 ~q~I~~~f~~~t~~LRqqL 70 (143)
T PRK11546 52 WQKIHNDFYAQTSALRQQL 70 (143)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333
No 111
>PF12976 DUF3860: Domain of Unknown Function with PDB structure (DUF3860); InterPro: IPR024619 This protein family includes hypothetical protein (JCVI_PEP_1096688149193) whose crystal structure has been solved PDB:2OD5. The hypothetical protein is from an environmental metagenome (unidentified marine microbe).
Probab=21.06 E-value=2.6e+02 Score=19.47 Aligned_cols=30 Identities=3% Similarity=-0.020 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHhhhC
Q 023838 21 VDEILTNQVMISAQQDKDWLVSVRRQIHEN 50 (276)
Q Consensus 21 ~~~~~~~~i~~~i~~~~~~~~~~~~~l~~i 50 (276)
-.+.+++.|.+|+.+.....++++..+-+.
T Consensus 2 ~s~~LR~~Ir~~L~ER~~NT~EI~~~~~~~ 31 (92)
T PF12976_consen 2 DSQNLRDLIRNYLSERPRNTIEISAWLASQ 31 (92)
T ss_pred chhHHHHHHHHHHhcCcccHHHHHHHHHhc
Confidence 345667777777777665666666555544
No 112
>PRK04280 arginine repressor; Provisional
Probab=20.49 E-value=1.9e+02 Score=22.79 Aligned_cols=33 Identities=18% Similarity=0.077 Sum_probs=22.3
Q ss_pred HHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHhcCCCee
Q 023838 39 WLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYA 76 (276)
Q Consensus 39 ~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~ 76 (276)
+=.+.+++|++-..++.+ +-|.+.|++.|++++
T Consensus 4 ~R~~~I~~iI~~~~I~tQ-----eeL~~~L~~~Gi~vT 36 (148)
T PRK04280 4 QRHIKIREIITNNEIETQ-----DELVDRLREEGFNVT 36 (148)
T ss_pred HHHHHHHHHHHhCCCCCH-----HHHHHHHHHcCCCee
Confidence 344566677766656544 557788888899875
No 113
>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found
Probab=20.45 E-value=1.6e+02 Score=22.60 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=21.3
Q ss_pred HHHHHhhHHHHHHHHHHhhhCCCCCCc
Q 023838 30 MISAQQDKDWLVSVRRQIHENPELLFE 56 (276)
Q Consensus 30 ~~~i~~~~~~~~~~~~~l~~ips~s~~ 56 (276)
.+++++++..+.++++.|+++|.....
T Consensus 96 ~~fie~Rr~~Le~fL~~l~~~p~l~~s 122 (132)
T cd06893 96 KDKIEARRGLLETFLRQLCSIPEISNS 122 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHhhhcC
Confidence 357888888888899999888886544
No 114
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed
Probab=20.39 E-value=3.2e+02 Score=26.75 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=30.8
Q ss_pred ChHHHHHHHhhhccccc-ccchhHHHHHHHHHHHHhhHHHHHHHHHHh--hhCCCCCCcHHHHHHHHHHHHH
Q 023838 1 MAIAFLLLLLPITYLTT-TTAVDEILTNQVMISAQQDKDWLVSVRRQI--HENPELLFEEHNTSALIRRELD 69 (276)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~i~~~~~~~~~~~~~l--~~ips~s~~e~~~~~~l~~~l~ 69 (276)
||+++-++|-..++-.+ -+|++..+++++. +..+++.+.-... ...|.+|..|. |.|.++|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----~L~~~l~~~~~~YY~~~~p~IsD~eY---D~L~~eL~ 69 (562)
T PRK08097 5 MALLISLLLWSSSAWAVCPDWSPARAQEEIA----ALQQQLAQWDDAYWRQGKSEVDDEVY---DQLRARLT 69 (562)
T ss_pred HHHHHHHHHhcccccccCCCCCHHHHHHHHH----HHHHHHHHHHHHHHhCCCCCCChHHH---HHHHHHHH
Confidence 45555555544444333 3445555666543 3344444444432 25677777665 34444444
Done!